The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-8848706" ], "output_participant_list": [ "R-ALL-8848709" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8848658", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8848658" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-8848706", "participant_name": "substrate protein for calpains [cytosol]", "crossref": [ { "id": "36080", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-8848709", "participant_name": "calpain-cleaved protein [cytosol]", "crossref": [ { "id": "15841", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BHV7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 678, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BHV7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BHV7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BHV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BHV7" }, { "id": "PS50203", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50203" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calpain catalytic", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 319, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287BHV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BHV7" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 580, "end_pos": 615, "start_aa": "Trp", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 189, "end_pos": 191 }, { "start_pos": 317, "end_pos": 319 }, { "start_pos": 565, "end_pos": 567 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BI14-1", "uniprot_ac": "A0A287BI14", "uniprot_id": "A0A287BI14_PIG", "mass": { "chemical_mass": 67440.0, "monoisotopic_mass": 67440.0 }, "refseq": {}, "gene_names": [ { "name": "SPMIP4", "type": "recommended", "evidence": [ { "id": "A0A287BI14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BI14" } ] }, { "name": "C18H7orf31", "type": "synonym", "evidence": [ { "id": "A0A287BI14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BI14" } ] } ], "protein_names": [ { "name": "Sperm microtubule inner protein 4", "type": "synonym", "evidence": [ { "id": "A0A287BI14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BI14/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BI14", "url": "https://www.uniprot.org/uniprotkb/A0A287BI14" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPMIP4", "url": "https://www.uniprot.org/uniprotkb/A0A287BI14", "locus": { "chromosome": "18", "start_pos": 47160344, "end_pos": 47117601, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033313", "url": "https://www.ensembl.org/id/ENSSSCG00000033313" } ] } } ], "crossref": [ { "id": "A0A287BI14", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BI14", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033313", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033313", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027886", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027886", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DFPKCVE", "url": "https://omabrowser.org/oma/group/DFPKCVE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BI14", "url": "https://www.orthodb.org/?gene=A0A287BI14", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31393", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31393", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31393:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31393:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15093", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15093", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BI14", "url": "https://www.uniprot.org/uniprotkb/A0A287BI14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BI14-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BI14-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVIHGRPYRCRELEGADILSNTFYSNELHTPLQTVVRPTASENRYQELRESLQACRLPWGAEREYGGMIPISGPEEHRPRCEPPLVMGPRHQHYGFGGETWPRKLPVEQFYYLSQNKKSDVYGNDSLMPKPPNSAVGEICSLYPIEHPYHTHISRGAIFPTFTSPKDVYTGVKARTQQPFPPTVPTKAYDTVVLKTRGNPYRYELLDFPTDSKKKALVWPGQGVYYDFPKCLEKNKPVFYPKPPKTFAPNTSFNSWDPSNSLKEANIQRNLERSHWITSYDHDFTGLGPMNPLELDDYHEKEVAELTGQMGFDPKPQEKFHSALKPTRPLEGRIARLIQNRRPLEPMVQQRPPSCPDCTPRVLCTFHTFVPSSTEMMALSDNMPAGVMLKNQEIEDKIKEEQSLLSTCALPSCYPTKDLANTYDVKPLPKITDTKKTEDLYWRQLSLKPQPTSYCTPEYYIPYEHLNQYDMCQNPVSLSKPDILQNKPDSEAFHLEHFLSRPEQMCLNMENDEETRPLLDWIPRAGMAKPHTDLLKLKTSFSKSGAQKRFHKSILDDQKDLRDKVHSGKKHQFYGHNSYYFYN", "length": 584, "header": "tr|A0A287BI14-1|A0A287BI14_PIG Isoform 1 of Sperm microtubule inner protein 4 OS=Sus scrofa OX=9823 GN=SPMIP4 PE=4 SV=1 CANONICAL=A0A287BI14-1" }, "isoforms": [ { "isoform_ac": "A0A287BI14-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BI14/entry#A0A287BI14-1", "sequence": { "sequence": "MEVIHGRPYRCRELEGADILSNTFYSNELHTPLQTVVRPTASENRYQELRESLQACRLPWGAEREYGGMIPISGPEEHRPRCEPPLVMGPRHQHYGFGGETWPRKLPVEQFYYLSQNKKSDVYGNDSLMPKPPNSAVGEICSLYPIEHPYHTHISRGAIFPTFTSPKDVYTGVKARTQQPFPPTVPTKAYDTVVLKTRGNPYRYELLDFPTDSKKKALVWPGQGVYYDFPKCLEKNKPVFYPKPPKTFAPNTSFNSWDPSNSLKEANIQRNLERSHWITSYDHDFTGLGPMNPLELDDYHEKEVAELTGQMGFDPKPQEKFHSALKPTRPLEGRIARLIQNRRPLEPMVQQRPPSCPDCTPRVLCTFHTFVPSSTEMMALSDNMPAGVMLKNQEIEDKIKEEQSLLSTCALPSCYPTKDLANTYDVKPLPKITDTKKTEDLYWRQLSLKPQPTSYCTPEYYIPYEHLNQYDMCQNPVSLSKPDILQNKPDSEAFHLEHFLSRPEQMCLNMENDEETRPLLDWIPRAGMAKPHTDLLKLKTSFSKSGAQKRFHKSILDDQKDLRDKVHSGKKHQFYGHNSYYFYN", "length": 584, "header": "tr|A0A287BI14-1|A0A287BI14_PIG Isoform 1 of Sperm microtubule inner protein 4 OS=Sus scrofa OX=9823 GN=SPMIP4 PE=4 SV=1 CANONICAL=A0A287BI14-1" }, "locus": { "chromosome": "18", "start_pos": 47159960, "end_pos": 47118543, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039573.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039573.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056004.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056004.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 40, "start_aa": "Thr", "end_pos": 40, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr40", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BI14", "url": "https://www.uniprot.org/uniprotkb/A0A287BI14" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "E1B9R1-1", "protein_name": "Sperm-associated microtubule inner protein 4", "gene_name": "SPMIP4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEVIHGQPYCCRELEGADILSDTFYSNELHTPLETATRPTASEDRYQKFRQSLQRCRLPWGAEREYGGMIPISLPEEHRPKCEPPRVMGKGHQHYGFGGEIWPRKLPIEQFYYLSQNKKSDIYGNDSLLPKPPNSTVGEICSPYPIEHPYHTHISRGAMFPTFTSPKDLYTGIKARTQQPFPPTVPTKPYDTTVLKTRGNPYRYELLDFPMDSKKKALVWPGQRVYFDLPKCVEKNKPVFYPKPPKTFAPNTSLNSWDPITSLKEVNIQRNLEKSHWITSYNHDFTGLGPMNPLELDDYHEKEVAELTGQIGFDPEPQEKVHPALKPTRPLEGRIARLIQNQRPLEAILEQRPSSCPDCTPRVLCTFHTFVPSSTEMMALSDNIPADVTHKNQEIEEKIKEEQSLLSTYALPSCYPTKDLANTYDIKPFPKITDTKKTEDLYWRQLSLKPQLIPYCNPDHYIPYEHLNQYNVYQNPVSLSKPGILQSKPDLKTFDFEHFLSKPEQLTLNMEDDEETKPILGWIPRAGVAKPQTDLLELKNAFSKTGAQKRFHKSVLEDYKDLRDKEHLGKKHQFYGHNSYYFYN", "length": 584 }, "evidence": [ { "id": "A0A287BI14", "url": "https://omabrowser.org/oma/group/A0A287BI14/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3H2K1-1", "protein_name": "Uncharacterized protein C7orf31 homolog", "gene_name": "CUNH7orf31", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEVIHGRPYCCRELEGADILSNTFYSNELHTPLETTTRQTASDDRYQELRDSLPQCRLPWGAEREYGGIIPVALPEEHRPKCEPPCVMSKGHQHYGFGGEIWPKKLPIEQFYYLTQNKKSNVYGNDSLLPKPPNSTVGEICSSYPIEHPYHTHTSRGAMFPTFTSPKDLYTGVKARTQQPFPPTMPTKTYDTTVLKTRGNPYRYELLDYPTDSKKKALTWPGQGVYYDFPKCVEKNKPIFYPKPPKTFAPNSSLNPWDAVGSAKEANIQRNLERSHWITSYTHDFTGLGPMSPLELDDYHEKEVADLTGQIGFDPQPQEKFHSSLKPSRPLEGRIARLLQNQRPLEATVQQGPPSCPDCTPRVLCAFHTFIPSSTEMMAMNDNILPGITHKNQDIEEKIKEEQGLMSTYTLPSCYPSKDLTNLYDLKPFSKITDTKKTDDLYWRQLGVKPLPISYSKSNHCIDYEPLKSAFRDSYTMCQSPARLSKSNILQSKTVMDDLNLDSFLSKPEYLDIDMESNDETRPILGWISGAGVSKPQTNLLDLRNSFSKSMAQKRLHNSIQEEQKDLRDKIQRGMRHQFYGHNAHYFYN", "length": 589 }, "evidence": [ { "id": "A0A287BI14", "url": "https://omabrowser.org/oma/group/A0A287BI14/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6AYM0-1", "protein_name": "Sperm-associated microtubule inner protein 4", "gene_name": "Spmip4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVIHGRPYCCRELEGADILSNTFYSNGLHTPYETTIRPTASEDRYQELRQALPQCRLRWGADREYGGMLPVSLPEEHRPKCEPPRLMSKGHQHYGFGGEIWPKKLPIEQYYYLTQNKKSDLYGNDSLLPKPPNSTVGEICSSYPIEHPYHTHISRGAMFPAFTSPKDLYTGVKARTQQPFPPTLPTKTYDSTILKTRGNPYRYELLDLPTDSKKKALTWPGQSVYYDFPKCVEKNKPVFYPKPPKTFAPNSSVTPWDTMTSAKDANIQRNLERSHWLTSYTHDFTGLGPMSPLELDDYREKELAELTGQIGFDPQPQEKFHPSLKPPRPLDGRIARLIQNQRPLEATVQIPPSCPDCTPRVLCAFHTFIPSSAEMMAMNDHLLSGLTHKNQNIEDKIKEEQRLLSTYALPSSYESKDMGSLFDLHSLPKITDTKKSDDLYWRQLDVKPLPIARSKSNHYIDYEPHKSTYRDPYAMCLNPVRLSKSNILQNKTDMADLTFDNYLRKPEFLGTDIESSDETRPLLNWISRAGVPKHHTNFRDFKNSFSRSMAHKRLHNSIQEEQKDLRDKLQCGMRHQFYGHNSHYFYN", "length": 588 }, "evidence": [ { "id": "A0A287BI14", "url": "https://omabrowser.org/oma/group/A0A287BI14/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8N865-1", "protein_name": "Sperm-associated microtubule inner protein 4", "gene_name": "SPMIP4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEVIHGRPYCCRELEGADILSNTFYSNELHNPLQTVTRPTASEDRYQELRESLQQCRLPWGAEREYGGIIPISLPEDHRPKYEPPRVMGKGHQHYGFGGETWPRKLPVEQFYYLTQNKKSDVYGNDSLIPKPPNSTVGEICLPYPIEHPYHTHICRGAMFPTFTSPEDLYTGIKARTQQPFPPTVPTKAYDSTVLKTRGNPYRYELIDIPMDSKKKALTWPGQGVYYDFPRGVEKNKPVFYPKPPKTFAPNTSLNSWDPICSAKEANIQRNLERSHWLTSYTHDFTGLGPMDPLELDDYHEKMVAELTRKIGFDPEPQEKFHPVFKPPRPLEGRIARLIQNRRSLEAIVQQRPRSCPDCTPRVLCNFHTFVPSSKEMVALSDNIPAGVTHKNQDIEEKIIEEQSLLSTYELPSCYPTKDLTSIYDIKPFPKITDTKKTEDLYWRQQSLKTQPTPYCKPDHWIHYENLKSPLRDQYNMCPDPVSLSKPSVLQNKQDTEAFTLEHFLSKPEEELFLNMENNEETRPVLGWIPRAGVTKPQTNLLELKNSFSKTGAQKRFHKSILEDHKDLRDNEHSGMKHQFYGHNSYYFYN", "length": 590 }, "evidence": [ { "id": "A0A287BI14", "url": "https://omabrowser.org/oma/group/A0A287BI14/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D5Y0-1", "protein_name": "Sperm-associated microtubule inner protein 4", "gene_name": "Spmip4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVIHGRPHCCRNLEGADILSNTFYSNGLHTPYETTIRPTASQARYQELREALPQCRLRWGADREYGGVLPVSLPEEHRPKCEPPRLMSKGHQHYGFGGEIWPKKLPIEQYYYMTQNKKSDVYGNDSLLPKPPNSAVKEICSPYPIEHPYHTHISRGSVFPTFTSPKDLYTGIKARTQQPFPPTVPTKACDTTILKTRGNPYRYELLDFPMDSKKKALTWPGQGVYYDFPKFVEKNKPVFYPKPPKTFAPNSSVNPWDTMSSAKDANIQRNLERSHWLTSYAHDFTGLGPMSPLELDDYHEKELAELTGQIGFDPQPQEKFHPALKTPRPLDGRIARLTQNQRPLEATVQIPPPCPDCTPRVLCAFHTFIPTSAEIMAMNNNLLSGITHKNQDVEEKIKEEQGLMSTCPLPTCYESKDLTSLYDVQSFPKITDTKKTDDLYWRQLEMKPLPISCSKSNHYIDYEPLKSAYRDPYAMCPNPVRLSKSNILQNKTDTADFTFDNFLSKPEFLGMNMESNEETRPLLDWIPRAGVPKHHSNLRNLRNTFSKSMAQKRLHNSIQEEQKDLRDKLQCGMRHQFFGYNGHHFYN", "length": 588 }, "evidence": [ { "id": "A0A287BI14", "url": "https://omabrowser.org/oma/group/A0A287BI14/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A287BI14", "url": "https://www.uniprot.org/uniprotkb/A0A287BI14" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 251, "end_pos": 253, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BI14-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 584, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BI14-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BI14" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { 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"mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BI29", "url": "https://www.uniprot.org/uniprotkb/A0A287BI29" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "METTL24", "url": "https://www.uniprot.org/uniprotkb/A0A287BI29", "locus": { "chromosome": "1", "start_pos": 76245825, "end_pos": 76367780, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004402", "url": "https://www.ensembl.org/id/ENSSSCG00000004402" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004402", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004402", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100736631", "url": "https://www.ncbi.nlm.nih.gov/gene/100736631", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025714", "url": 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13383", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13383", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003480348", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480348", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BI29", "url": "https://www.uniprot.org/uniprotkb/A0A287BI29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BI29-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BI29-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAWQRPPRRGCGSLQRCLLGAALLLGLRLCAELRRASLRPPASSAPPGRAPRPPRPHLPPAPGLQRGASWRQVTYVRSGRRAPPGGGGSGTPKPCCAPHGSPRRKGPRWHIDLQPWAGPARSLDEEALRFLRYISTIQIACDHMSTDSLATDSSPTKKPWSVCLDDRFGLAHQIHSKQCRLYSLGLGSDDTRFEVGMANDGCEVHRFDPSVKSAHVLENERLWYHRLSINWRDPHPAVAAQKPYSSTRKLRTILNEFGHHKIDILKADLESAEWKVLENLILEDVLEQIGQLIFEIHLHWPGFEVSGSDSSVVRFWYSLLKELELQDFRLFHSYKDLSKPQIFLRKNIFNASSCYTLSWVNTRWK", "length": 365, "header": "tr|A0A287BI29-1|A0A287BI29_PIG Isoform 1 of Methyltransferase like 24 OS=Sus scrofa OX=9823 GN=METTL24 PE=4 SV=1 CANONICAL=A0A287BI29-1" }, "isoforms": [ { "isoform_ac": "A0A287BI29-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BI29/entry#A0A287BI29-1", "sequence": { "sequence": "MAWQRPPRRGCGSLQRCLLGAALLLGLRLCAELRRASLRPPASSAPPGRAPRPPRPHLPPAPGLQRGASWRQVTYVRSGRRAPPGGGGSGTPKPCCAPHGSPRRKGPRWHIDLQPWAGPARSLDEEALRFLRYISTIQIACDHMSTDSLATDSSPTKKPWSVCLDDRFGLAHQIHSKQCRLYSLGLGSDDTRFEVGMANDGCEVHRFDPSVKSAHVLENERLWYHRLSINWRDPHPAVAAQKPYSSTRKLRTILNEFGHHKIDILKADLESAEWKVLENLILEDVLEQIGQLIFEIHLHWPGFEVSGSDSSVVRFWYSLLKELELQDFRLFHSYKDLSKPQIFLRKNIFNASSCYTLSWVNTRWK", "length": 365, "header": "tr|A0A287BI29-1|A0A287BI29_PIG Isoform 1 of Methyltransferase like 24 OS=Sus scrofa OX=9823 GN=METTL24 PE=4 SV=1 CANONICAL=A0A287BI29-1" }, "locus": { "chromosome": "1", "start_pos": 76367719, "end_pos": 76250758, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043886.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043886.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056020.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056020.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BI29", "url": "https://www.uniprot.org/uniprotkb/A0A287BI29" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100736631", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736631", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QGJ7-1", "protein_name": "Methyltransferase-like protein 24", "gene_name": "Mettl24", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MATARPPGRGSGALPLWLLGAALLLGLRLCMELHRPGSGSPGRHDPPGPPRPHLLSPPDPPRGARRRQVTYVRSGRRALPRGGGTTTLEPSCCTPGGLPSRKGPRWHIELQPWAGPAQSLDEEALRFLSYISTTQIACDHMGTDSLATDSSPATKPWLVCLDDRFGLAHQIRSKQCRLYSLGLGSDDTHFEVSMANDGCEVHRFDPSVKSAHVLESQHLWHHRLSIDWRDPHPAVAAQKSHSNTRKLGSILNEFGHHKIDILKADLESAEWKVLENLILEDVLEQIGQLVFEIHLHWPGFEVSGSESSVVRFWYSLLKELEQKDFRLFHTYKDLSKPQLFLKKDIFNASSCYTLSWVNTRWK", "length": 362 }, "evidence": [ { "id": "A0A287BI29", "url": "https://omabrowser.org/oma/group/A0A287BI29/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0YU23-1", "protein_name": "Methyltransferase like 24", "gene_name": "METTL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPKERPLWRRAAFRLCVLSAALLLCLQLAMRRSWCPEEKLRLPAVAASGRAVPQPRGTAAAPGRRRVTYVRSGRRGGRPGCCPPGRKTVRWHIELQPWASPTPSLNYEALRFLKYISTSQISCEHMNVSSLRGNSEATKRPWSVCLDERFSLIHRLRNKQCRLYSLGLGSDDNQFEISMANSGCEVHRFDPSIKSAHIQEGQHLWYHRLSVDWRDPNPAIATHKLHSNTKKLGTILNEFGHQKIDVLKADVESAEWKILENLILEDVVEQIGQLVFEVHIHWPGFEVSGNDSTVVRYWYSLLRELELKDFRLFHTYKDLLKPQMLLKKEAFNASSCYRLSWVNTRWK", "length": 347 }, "evidence": [ { "id": "A0A287BI29", "url": "https://omabrowser.org/oma/group/A0A287BI29/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1B869-1", "protein_name": "Methyltransferase like 24", "gene_name": "METTL24", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MARERLPGRGCCALRRCLLAAALLLGLRLCAELQRAGPQPPALSPPPGQAPRPPGSHLQPAPGQLRGASRRQVTYVRSGRRAPAGGSRSGTPEPGCCALRGRPRLKGPRWQIDLQPWAGPARSLDEEALRFLRYISTIQIECDHMSTDSLATDSSPTKKPWPVCLDDRFGLVHQIRNKQCRLYSLGLGSDDTHFEVGMASNGCEVHRFDPSVKSAHVLESERLWFHRLSIDWRDPHPAVAAQKPYGNTRKLGAILNEFGHHKIDVLKADLESAEWKVLENLILEDVLEQIGQLIFEIHLHWPGFEVSGSDSSVVRFWYSLLKELELQDFRLFHSYKDLSKPQLFLKKDIFNASSCYTLGWVNTRWK", "length": 366 }, "evidence": [ { "id": "A0A287BI29", "url": "https://omabrowser.org/oma/group/A0A287BI29/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5BK01-1", "protein_name": "Probable methyltransferase-like protein 24", "gene_name": "Mettl24", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTAKPPGRGCGALPRWLLGAALLLGLRLCMELRHAGSGPPGRRDLRGPPRTHLLPAPGPLRGTRRRQVTYVRSGRRALPRGGVSTTPPEPSCCAQLGLPSRKGPRWHIELQPWAGPSRSLDEEASRFLNYIGTTQIACDRMGTNSVATDSGPALKPWLVCLDDRFGLAHQIRTKQCRLYSLGLGSDDTHFEVSMANGGCEVHRFDPSVRSAHVLQSQRLWHHRLSIDWRDPHPAVAAQKPYSNTRKLGSILNEFGHHKIDVLKADLESAEWKVLENLILEDVLEQIGQLIFEIHLHWPGFEVSGSESSVVRFWYSLLKELERKDFRLFHTYKDLSKPQLFLKKDIFNASSCYTLSWVNTRWR", "length": 363 }, "evidence": [ { "id": "A0A287BI29", "url": "https://omabrowser.org/oma/group/A0A287BI29/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JXM2-1", "protein_name": "Probable methyltransferase-like protein 24", "gene_name": "METTL24", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARERPPGRGCGVLRRCLLGAVLLFGLRLCAELRRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCAPRGRPRRKGPRWHIDLQPWAGSAQSLDEEAWRFLRYISTTQIACNHMNTDSLATDSSPTHKPWSVCLDDRFNLAHQIRNKQCRLYSLGLGSDDTHFEVSMANNGCEVHRFDPSVKSAHILESQHLWYHRLSIDWRDPHPAVAAQKPHSNTRKLGSILNEFGHHKIDVLKADLESAEWKVLENLILEDVLEQIGQLIFEIHLHWPGFEVSGSDSSVVRFWYSLLKELEQKDFRLFHSYKDLSKPQLFLKKDIFNASSCYTLSWVNTRWK", "length": 366 }, "evidence": [ { "id": "A0A287BI29", "url": "https://omabrowser.org/oma/group/A0A287BI29/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CCB5-1", "protein_name": "Probable methyltransferase-like protein 24", "gene_name": "Mettl24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATVKPPGRGCGALPRWLLGAALLLGLRLCMELRHAGSGPPGRGDSPGPPRTHLLSAPGSPRGARRRQVTYVRSGRRVLPRGGGSTTSPEPSCCAQGGLLRRKGSRWHIELQPWAGPSRSLDEEASRFLSYISTTQIACDHMGTDSLATDSSPAPKPWLVCLDDRFGLAHQIRSKRCRLYSLGLGSDDTHFEVSMANGGCEVHRFDPSVKSAHVLERQGLWHHRLSIDWRDPHPAVAAQKPHGNTRKLGSILNEFGHHKIDVLKADLESAEWKVLENLILEDVLEQIGQLVFEIHLHWPGFEVSGSESGVVRFWYSLLKELERKHFRLFHTYKDLTKPQLFLKKDLFNASSCYTLSWVNTKWR", "length": 363 }, "evidence": [ { "id": "A0A287BI29", "url": "https://omabrowser.org/oma/group/A0A287BI29/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "methyltransferase activity", "id": "GO:0008168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008168", "evidence": [ { "database": "UniProtKB", "id": "A0A287BI29", "url": "https://www.uniprot.org/uniprotkb/A0A287BI29" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "methylation", "id": "GO:0032259", 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"categories": [ "Protein Classification" ] }, { "id": "PTHR24271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271:SF47", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271:SF47", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1592389", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1592389", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BI78", "url": "https://www.uniprot.org/uniprotkb/A0A287BI78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BI78-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BI78-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1KZC8", "url": "https://www.uniprot.org/uniprotkb/A0A8D1KZC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1KZC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1KZC8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LSM8", "url": "https://www.uniprot.org/uniprotkb/I3LSM8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LSM8-1", "url": "https://www.uniprot.org/uniprotkb/I3LSM8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWFLVLRLALSLAGTGAAPPIQSRIIGGRECEKDSHPWQVAIYHYSSFQCGGVLVDPKWVLTAAHCKNDNYQVWLGRHNLFENEDTAQFFGVTADFPHPGFNLSLLKNHTKADGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCQASGWGSIEPGPDDFEFPDEIQCVELTLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLICNGMWQGITSWGHTPCGSANKPSIYTKLIFYLDWINDTITENP", "length": 263, "header": "tr|A0A287BI78-1|A0A287BI78_PIG Isoform 1 of tissue kallikrein OS=Sus scrofa OX=9823 GN=KLK1 PE=3 SV=1 CANONICAL=A0A287BI78-1" }, "isoforms": [ { "isoform_ac": "A0A287BI78-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BI78/entry#A0A287BI78-1", "sequence": { "sequence": "MWFLVLRLALSLAGTGAAPPIQSRIIGGRECEKDSHPWQVAIYHYSSFQCGGVLVDPKWVLTAAHCKNDNYQVWLGRHNLFENEDTAQFFGVTADFPHPGFNLSLLKNHTKADGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCQASGWGSIEPGPDDFEFPDEIQCVELTLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLICNGMWQGITSWGHTPCGSANKPSIYTKLIFYLDWINDTITENP", "length": 263, "header": "tr|A0A287BI78-1|A0A287BI78_PIG Isoform 1 of tissue kallikrein OS=Sus scrofa OX=9823 GN=KLK1 PE=3 SV=1 CANONICAL=A0A287BI78-1" }, "locus": { "chromosome": "6", "start_pos": 55576398, "end_pos": 55570684, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052328.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052328.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055845.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055845.1" } ] } }, { "isoform_ac": "A0A8D1KZC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BI78/entry#A0A8D1KZC8-1", "sequence": { "sequence": "LWSCVPLPPSHRAAPPIQSRIIGGRECEKDSHPWQVAIYHYSSFQCGGVLVDPKWVLTAAHCKNDNYQVWLGRHNLFENEDTAQFFGVTADFPHPGFNLSLLKNHTKADGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCQASGWGSIEPGPDDFEFPDEIQCVELTLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLICNGMWQGITSWGHTPCGSANKPSIYTKLIFYLDWINDTITENP", "length": 259, "header": "tr|A0A8D1KZC8-1|A0A287BI78_PIG Computationally mapped isoform of tissue kallikrein OS=Sus scrofa OX=9823 GN=KLK1 PE=3 SV=1 CANONICAL=A0A287BI78-1" }, "locus": { "chromosome": "6", "start_pos": 55574188, "end_pos": 55570684, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068867.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068867.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069078.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069078.1" } ] } }, { "isoform_ac": "I3LSM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BI78/entry#I3LSM8-1", "sequence": { "sequence": "APPIQSRIIGGRECEKDSHPWQVAIYHYSSFQCGGVLVDPKWVLTAAHCKNDNYQVWLGRHNLFENEDTAQFFGVTADFPHPGFNLSLLKNHTKADGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCQASGWGSIEPGPDDFEFPDEIQCVELTLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLICNGMWQGITSWGHTPCGSANKPSIYTKLIFYLDWINDTITENP", "length": 246, "header": "tr|I3LSM8-1|A0A287BI78_PIG Computationally mapped isoform of tissue kallikrein OS=Sus scrofa OX=9823 GN=KLK1 PE=3 SV=2 CANONICAL=A0A287BI78-1" }, "locus": { "chromosome": "6", "start_pos": 55574064, "end_pos": 55570684, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025379.3", "url": "https://www.ensembl.org/id/ENSSSCT00000025379.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027121.2", "url": "https://www.ensembl.org/id/ENSSSCP00000027121.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LSM8", "url": "https://www.uniprot.org/uniprotkb/I3LSM8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1592389", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1592389", "resource": "Reactome", "description": "Activation of Matrix Metalloproteinases" } ], "orthologs": [ { "uniprot_canonical_ac": "P06870-1", "protein_name": "Kallikrein-1", "gene_name": "KLK1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWFLVLCLALSLGGTGAAPPIQSRIVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCISDNYQLWLGRHNLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPLMCDGVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIAENS", "length": 262 }, "evidence": [ { "id": "A0A287BI78", "url": "https://omabrowser.org/oma/group/A0A287BI78/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P15947-1", "protein_name": "Kallikrein-1", "gene_name": "Klk1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFLILFLALSLGGIDAAPPVQSRIVGGFNCEKNSQPWQVAVYRFTKYQCGGILLNANWVLTAAHCHNDKYQVWLGKNNFLEDEPSAQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLKKPADITDVVKPIDLPTEEPKLGSTCLASGWGSITPVKYEYPDELQCVNLKLLPNEDCAKAHIEKVTDDMLCAGDMDGGKDTCAGDSGGPLICDGVLQGITSWGPSPCGKPNVPGIYTRVLNFNTWIRETMAEND", "length": 261 }, "evidence": [ { "id": "A0A287BI78", "url": "https://omabrowser.org/oma/group/A0A287BI78/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P36374-1", "protein_name": "Prostatic glandular kallikrein-6", "gene_name": "Klk6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWLLILFLILSLGWNDAAPPGQSRIIGGFNCEKNSQPWQVAVYHFNEPQCGGVLIHPSWVITAAHCYSVNYQVWLGRNNLLEDEPFAQHRLVSQSFPHPGFNLDIIKNHTRKPGNDYSNDLMLLHLKTPADITDGVKVIDLPTEEPKVGSTCLTSGWGSITPLKWEFPDDLQCVNIHLLSNEKCIKAYNDEVTDVMLCAGEMDGGKDICKGDSGGPLICDGVLQGITSWGSMPCGEPNKPSVYTKLIKFTSWMKKVMKENP", "length": 261 }, "evidence": [ { "id": "A0A287BI78", "url": 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"" }, { "name": "secretory granule", "id": "GO:0030141", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030141", "evidence": [ { "database": "UniProtKB", "id": "A0A287BI78", "url": "https://www.uniprot.org/uniprotkb/A0A287BI78" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of systemic arterial blood pressure", "id": "GO:0003073", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003073", "evidence": [ { "database": "UniProtKB", "id": "A0A287BI78", "url": "https://www.uniprot.org/uniprotkb/A0A287BI78" } ], "pmid": "" }, { "name": "zymogen activation", "id": "GO:0031638", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031638", "evidence": [ { "database": "UniProtKB", "id": "A0A287BI78", "url": "https://www.uniprot.org/uniprotkb/A0A287BI78" } ], "pmid": "" }, { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A287BI78", "url": "https://www.uniprot.org/uniprotkb/A0A287BI78" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 108, "end_pos": 110, "annotation": "n_glycosylation_sequon" }, { "start_pos": 256, "end_pos": 258, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-1592398", "name": "Activation of proMMP8", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "extracellular region", "input_participant_list": [ "R-SSC-1604708" ], "output_participant_list": [ "R-SSC-1442475" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1592398", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1592398" } ] }, { "id": "R-SSC-1604722", "name": "Activation of proMMP9 by proteases", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. 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"uniprot_ac": "A0A287BIE2", "uniprot_id": "A0A287BIE2_PIG", "mass": { "chemical_mass": 16613.0, "monoisotopic_mass": 16613.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287BIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BIE2", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE2", "locus": {} } ], "crossref": [ { "id": "A0A287BIE2", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BIE2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000034352", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034352", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004038", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004038", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PF01248", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01248", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BIE2", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPLYPDAAGKGDEPNKRPPVLRAGVNTVTTLVENKKLVVFLPALCGKMGVSYCIIKGKARLGWLVHRKTCTTVAFTQVNSEAKGALAKLVEAIRTNYNDRYDEIWHHWGGNVLGPKSVARIAKLERRRPKNWPPNWPGCNFFIQSSKT", "length": 149, "header": "tr|A0A287BIE2-1|A0A287BIE2_PIG Isoform 1 of Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287BIE2-1" }, "isoforms": [ { "isoform_ac": "A0A287BIE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE2/entry#A0A287BIE2-1", "sequence": { "sequence": "MAPLYPDAAGKGDEPNKRPPVLRAGVNTVTTLVENKKLVVFLPALCGKMGVSYCIIKGKARLGWLVHRKTCTTVAFTQVNSEAKGALAKLVEAIRTNYNDRYDEIWHHWGGNVLGPKSVARIAKLERRRPKNWPPNWPGCNFFIQSSKT", "length": 149, "header": "tr|A0A287BIE2-1|A0A287BIE2_PIG Isoform 1 of Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287BIE2-1" }, "locus": { "chromosome": "1", "start_pos": 121190717, "end_pos": 121189762, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045108.2", "url": "https://www.ensembl.org/id/ENSSSCT00000045108.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056132.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056132.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BIE2", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BIE2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 149, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BIE2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BIE2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE2" }, { "id": "PF01248", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01248" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ribosomal protein eL8/eL30/eS12/Gadd45", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 83, "start_aa": "Glu", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"https://www.uniprot.org/uniprotkb/A0A287BIE7" } ] } ], "protein_names": [ { "name": "Cilia and flagella associated protein 65", "type": "synonym", "evidence": [ { "id": "A0A287BIE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BIE7", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CFAP65", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7", "locus": { "chromosome": "15", "start_pos": 121026245, "end_pos": 121062738, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016203", "url": "https://www.ensembl.org/id/ENSSSCG00000016203" } ] } } ], "crossref": [ { "id": "A0A287BIE7", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BIE7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016203", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016203", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008962", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008962", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052614", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052614", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056305", "database": "InterPro", "categories": [ "Protein 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"length": 1856, "header": "tr|A0A287BIE7-1|A0A287BIE7_PIG Isoform 1 of Cilia and flagella associated protein 65 OS=Sus scrofa OX=9823 GN=CFAP65 PE=4 SV=3 CANONICAL=A0A287BIE7-1" }, "isoforms": [ { "isoform_ac": "A0A287BIE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7/entry#A0A287BIE7-1", "sequence": { "sequence": "MADGVAQGRLQGQSFGESSWKTIPVTSEEVTRNACLSPSLSRPPPGVSSAVIHYLLEVGRSLPILWVFASHPAFFSLPTKQPASSVDTKLCLLKKQEKMKKRVIWGIEVAEELQWKGWELGKEITKNLVLKNLSWKIQKIKYRPPKTKFFFTVIPQPIFLSPGITLSLPIIFRPLEKKEYMDQLWFEKAEGMFRVDLRATLPRHNLICPPSLQLPMCAMGDTAEAWFCLDNVGDLTTFFTWESPSPFQVLPNTGLLEPGQACQIKVTFQPLMAVIYDVQATCWYGEGSKQKSSIQLRAKCAQLLVSIKQKRPEDQEAEGFQKVLHFGSVAVGCTTERQIKLYNPSAVSASFRIEMAPDTLAKDQAFWCPVAHGVVLPGEKKCVSVFFHPETLDIRTMDYLSIMPSGGASQTLLKLVGFCRGPDVSLQYHCIDFSWVNLGERSEQTLWIENKSDCTAHFQFAIDCQESVFSIRPAFGTLVGKARITLHCTFQPTHPIIYFRRVACLIHHQDPLFLDLIGTCHSDSTKPAILRPQHLAWYRTHLARGLTLYPPDILGIMLREKKLEQDKNGALMIPIEQDLEDVPALQYPLIPPMTEYFFDGTNDMAIFPPPVSLEPVEVDFGACPRPEDPNPVPLCLMNHTNGKITVAWTRRSDCPFWVTPNTCDVPPLKSMAMRLHFQPPHPNCLYALELEGFAVYKVLRSYNNIEEDCTVCPSWCLTLRARGHSYGATLEHHIPQYSLHVPKLFPAVSPGEPSYRSLLLINKGSMLLTFNLAPQSSPDISLRPSSGLVAPGAHQIFLICTYPKGNSWRQHVFYLQFNLCPQYLQEVSMQSREEPLQLKLDTSKSIFFKPTWVGCSSTSLFTFRNPTRLPLEFEWRVSQQLRKMLAVQPARGIIQPNESLTMTWTFSPLEETKYLFRVGIWVWEAGLPPNTKPPTTTHYMLRLVGLGITGSLSAKEKELDFGNILVNSKQSRTLVLLNDGDCTLYYRLFLEQCSPEAVDNGPLALQLDRTEGSMPPRSQDTICLIACPKFRSQYSWTISYSLLSHRGTWKQELCRVSLMAVYPILSILDICSMGSAQGITRKHLWRLFSLDLLNSYLERDPTPWELTYEVPTRHSTSQTPPVFTPLKLNFNFGAAPIDAPPSVVLLALKNSGLVPLDWTFLFPSDQQINLELWAEQAEFNCTELHQMRVQDNCIFSISPKAGSLSPGQEQMVEFKYRFHLFVGTDRLPVLFKVSHGREILLNFIGVTVELGQKYVHFTSTSHQFIPVSIGDTLPPRQIYELYNGGSVPVTYEIQTNILSEVQEKNFDHPIFCCLNPKGEIQPGTTAQVLWIFSPIEAKTYTVDVPIHILGWNSAIIRFQGVGYDPHVMGDTAPFHNISSGDNSSIHSRLMVPGQSVFLSQSHISLGNIPVQSKCSRLLFLNNISKNDTVVFVWQLKPPESGEVRVLSPLGQPALFGGISFSLFQLGNQIFLVCRQHFPREGFGRGRGWELGRTKGTPIVIHASPFPKTLPPIKNQEYLNRPTSWNLKIPKEETHWPCPQPPSPGMLYLGLTARAHATDYFLANFFSDFPRHFLHRPNPCLSVRTFSSSLPPRGLLEDKIFHEAVDQNLVEQMPYFCQFWNEQSAKFTVQKSNLHLMPDPSLSSNSSEDKEEEEEEQEEEEEEEEEEEMEEETDEEEETGKEKLEEEEVEEKEVEEKEEKLPWMDIKPEPQPTSHESLKWQWQQQLKVLLPAFANLQEALLENMIQNILVEASRGEVVLTSRPRVIALPPLSVPRLGRPGQRPQGGEGAQVPDTPPLPPPPRPRWSSGPKAQAGAGRGVRGAPPPLSQYLPRANGRPDRCVCVCVCVCVCVCVCVCV", "length": 1856, "header": "tr|A0A287BIE7-1|A0A287BIE7_PIG Isoform 1 of Cilia and flagella associated protein 65 OS=Sus scrofa OX=9823 GN=CFAP65 PE=4 SV=3 CANONICAL=A0A287BIE7-1" }, "locus": { "chromosome": "15", "start_pos": 121062637, "end_pos": 121026248, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047044.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047044.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056137.3", "url": "https://www.ensembl.org/id/ENSSSCP00000056137.3" } ] } }, { "isoform_ac": "F1SRW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7/entry#F1SRW7-1", "sequence": { "sequence": "GGVRRKRWHLSRTVSEGVEWPMGSVDTKLCLLKKQEKMKKRVIWGIEVAEELQWKGWELGKEITKNLVLKNLSWKIQKIKYRPPKTKFFFTVIPQPIFLSPGITLSLPIIFRPLEKKEYMDQLWFEKAEGMFRVDLRATLPRHNLICPPSLQLPMCAMGDTAEAWFCLDNVGDLTTFFTWESPSPFQVLPNTGLLEPGQACQIKVTFQPLMAVIYDVQATCWYGEGSKQKSSIQLRAKCAQLLVSIKQKRPEDQEAEGFQKVLHFGSVAVGCTTERQIKLYNPSAVSASFRIEMAPDTLAKDQAFWCPVAHGVVLPGEKKCVSVFFHPETLDIRTMDYLSIMPSGGASQTLLKLVGFCRGPDVSLQYHCIDFSWVNLGERSEQTLWIENKSDCTAHFQFAIDCQESVFSIRPAFGTLVGKARITLHCTFQPTHPIIYFRRVACLIHHQDPLFLDLIGTCHSDSTKPAILRPQHLAWYRTHLARGLTLYPPDILGIMLREKKLEQDKNGALMIPIEQDLEDVPALQYPLIPPMTEYFFDGTNDMAIFPPPVSLEPVEVDFGACPRPEDPNPVPLCLMNHTNGKITVAWTRRSDCPFWVTPNTCDVPPLKSMAMRLHFQPPHPNCLYALELEGFAVYKVLRSYNNIEEDCTVCPSWCLTLRARGHSYGATLEHHIPQYSLHVPKLFPAVSPGEPSYRSLLLINKGSMLLTFNLAPQSSPDISLRPSSGLVAPGAHQIFLICTYPKGNSWRQHVFYLQFNLCPQYLQEVSMQSREEPLQLKLDTSKSIFFKPTWVGCSSTSLFTFRNPTRLPLEFEWRVSQQLRKMLAVQPARGIIQPNESLTMTWTFSPLEETKYLFRVGIWVWEAGLPPNTKPPTTTHYMLRLVGLGITGSLSAKEKELDFGNILVNSKQSRTLVLLNDGDCTLYYRLFLEQCRPSGLHWRPSLPLTPLGMPPRSQDTICLIACPKFRSQYSWTISYSLLSHRDNKVGEKQELCRVSLMAVYPILSILDICSMGSAQGITRKHLWRLFSLDLLNSYLERDPTPWELTYEVPTRHSTSQTPPVFTPLKLNFNFGAAPIDAPPSVVLLALKNSGLVPLDWTFLFPSDQQINLELWAEQAEFNCTELHQMRVQDNCIFSISPKAGSLSPGQEQMVEFKYRFHLFVGTDRLPVLFKVSHGREILLNFIGVTVELGQKYVHFTSTSHQFIPVSIGDTLPPRQIYELYNGGSVPVTYEIQTNILSEVQEKNFDHPIFCCLNPKGEIQPGTTAQVLWIFSPIEAKTYTVDVPIHILGWNSAIIRFQGVGYDPHVMGDTAPFHNISSGDNSSIHSRLMVPGQSVFLSQSHISLGNIPVQSKCSRLLFLNNISKNDTVVFVWQLKPPESGEVSVSPIKGKVAPEETIPFVVTLKASVHASFYSIDLVCKVYRQELLKQYHKELQEWKDEKARQEVEFTITDRKVKRQAYCTACEPVRKYKTLPPIKNQEYLNRPTSWNLKIPKEETHWPCPQPPSPGMLYLGLTARAHATDYFLANFFSDFPRHFLHRELPKRKCPRKESEADEDSLEMWALVSKQEKQLLVDCLTTIIRGLLEDKIFHEAVDQNLVEQMPYFCQFWNEQSAKFTVQKSNLHLMPDPSLSSNSSEDSRDKEKEEGKRRLRKKEGGEEEKDEEEEEEEEQEEEEEEEEEEEMEEETDEEEETGKEKLEEEEVEEKEVEEKEEKLPAFANLQEALLENMIQNILVEASRGEVVLTSRPRVIALPPLSVPRLGDIWCCSRGAQVPDTPPLPPPPRPRWSSGPKAQAGAGRGVRGAPPPLSQYLPRANGRPDRCVCVCVCVCVCVCVCVCV", "length": 1837, "header": "tr|F1SRW7-1|A0A287BIE7_PIG Computationally mapped isoform of Cilia and flagella associated protein 65 OS=Sus scrofa OX=9823 GN=CFAP65 PE=4 SV=4 CANONICAL=A0A287BIE7-1" }, "locus": { "chromosome": "15", "start_pos": 121062738, "end_pos": 121026248, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017644.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017644.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017166.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017166.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRW7", "url": "https://www.uniprot.org/uniprotkb/F1SRW7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "axonemal central apparatus", "id": "GO:1990716", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990716", "evidence": [ { "database": "UniProtKB", "id": "A0A287BIE7", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287BIE7", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7" } ], "pmid": "" }, { "name": "acrosomal vesicle", "id": "GO:0001669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001669", "evidence": [ { "database": "UniProtKB", "id": "A0A287BIE7", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7" } ], "pmid": "" }, { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "A0A287BIE7", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7" } ], "pmid": "" }, { "name": "sperm midpiece", "id": "GO:0097225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097225", "evidence": [ { "database": "UniProtKB", "id": "A0A287BIE7", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7" } ], "pmid": "" }, { "name": "motile cilium", "id": "GO:0031514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031514", "evidence": [ { "database": "UniProtKB", "id": "A0A287BIE7", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "acrosome assembly", "id": "GO:0001675", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001675", "evidence": [ { "database": "UniProtKB", "id": "A0A287BIE7", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7" } ], "pmid": "" }, { "name": "sperm axoneme assembly", "id": "GO:0007288", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007288", "evidence": [ { "database": "UniProtKB", "id": "A0A287BIE7", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7" } ], "pmid": "" }, { "name": "sperm mitochondrial sheath assembly", "id": "GO:0120317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120317", "evidence": [ { "database": "UniProtKB", "id": "A0A287BIE7", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1180, "end_pos": 1182, "annotation": "n_glycosylation_sequon" }, { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1376, "end_pos": 1378, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1382, "end_pos": 1384, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1422, "end_pos": 1424, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1426, "end_pos": 1428, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1644, "end_pos": 1646, "annotation": "n_glycosylation_sequon" }, { "start_pos": 450, "end_pos": 452, "annotation": "n_glycosylation_sequon" }, { "start_pos": 638, "end_pos": 640, "annotation": "n_glycosylation_sequon" }, { "start_pos": 897, "end_pos": 899, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BIE7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1856, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BIE7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BIE7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BIE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7" }, { "id": "PF25248", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25248" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CFAP65 eight Ig-like", "eco_id": "ECO_0000259", "start_pos": 950, "end_pos": 1048, "start_aa": "Gly", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287BIE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7" }, { "id": "PF24507", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24507" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CFAP65 fourth Ig-like", "eco_id": "ECO_0000259", "start_pos": 430, "end_pos": 523, "start_aa": "Cys", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287BIE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7" }, { "id": "PF25249", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25249" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CFAP65 seventh Ig-like", "eco_id": "ECO_0000259", "start_pos": 843, "end_pos": 914, "start_aa": "Ser", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287BIE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BIE7" }, { "id": "PF24291", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24291" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CFAP65 tenth Ig-like", "eco_id": "ECO_0000259", "start_pos": 1249, "end_pos": 1366, "start_aa": "Glu", "end_aa": "His", "glycosite_overlap": "" }, { 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"length": 1069, "header": "tr|A0A5G2QWX0-1|A0A287BII2_PIG Computationally mapped isoform of HEAT repeat-containing protein 6 OS=Sus scrofa OX=9823 GN=HEATR6 PE=4 SV=1 CANONICAL=A0A287BII2-1" }, "locus": { "chromosome": "12", "start_pos": 39347149, "end_pos": 39307468, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072787.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072787.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066434.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066434.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWX0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWX0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 613, "end_pos": 615, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" }, { "start_pos": 823, "end_pos": 825, "annotation": "n_glycosylation_sequon" }, { "start_pos": 882, "end_pos": 884, "annotation": 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"MAHGSVTFRDVAIDFSQEEWEFLDAAQRDLYRDVMWENYSNFISLGPSISKPDVITLLDEGKEPWMVVREGTRRHHPDLESRYRTNTLSPEKDIYEIYSFQWEIMERIKSYSLQDSIFRNDWECKSKIEEQKDPQEEYFGQVKITSEKVTSYKRLNLLAEYQRIRNGEKLYECKECRKTFIRRSTLSQHLRIHTGEKPYKCKECGQAFRQRAHLIRHHKLHTGEKPYECKECGKAFTVLQELTQHQRLHTGEKPYECKECGKAFRVHQQLARHQRIHTGEKPYECKACGKTFRQCTHLTRHQRLHTSEKLYECKECGKAFVCGPDLRIHQKIHFGEKPYECKECGKAFRICQQLTVHQSIHTGEKPYECKECGKTFRLRQQLVRHQRIHTREKPYECMECWKTFSSYSQLISHQSIHIGERPYECEECGKAFRLLSQLTQHQSIHTGEKPYECKECRKPFRLLSQLTQHQSIHTGEKPYECKECGKAFRLYSFLTQHQRIHTGEKPYKCKECKKAFRQHSHLTQHQKIHNGI", "length": 532, "header": "tr|A0A287BIS9-1|A0A287BIS9_PIG Isoform 1 of ZFP14 zinc finger protein OS=Sus scrofa OX=9823 GN=ZFP14 PE=3 SV=2 CANONICAL=A0A287BIS9-1" }, "locus": { "chromosome": "6", "start_pos": 46013056, "end_pos": 45994556, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052379.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052379.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056273.2", "url": 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"https://www.uniprot.org/uniprotkb/A0A287BJ27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJ27-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ27-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "CWGPPNAAKLVALNVYLQAHVEHHRSHHVDVGEVHTQPPGQVEEGEQRAREPLAEGAVGAGPNPQPHGS", "length": 69, "header": "tr|A0A287BJ27-1|A0A287BJ27_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287BJ27-1" }, "isoforms": [ { "isoform_ac": "A0A287BJ27-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ27/entry#A0A287BJ27-1", "sequence": { "sequence": "CWGPPNAAKLVALNVYLQAHVEHHRSHHVDVGEVHTQPPGQVEEGEQRAREPLAEGAVGAGPNPQPHGS", "length": 69, "header": "tr|A0A287BJ27-1|A0A287BJ27_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287BJ27-1" }, "locus": { "chromosome": "X", "start_pos": 110760321, "end_pos": 110759003, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055311.2", "url": "https://www.ensembl.org/id/ENSSSCT00000055311.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056156.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056156.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ27", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ27" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BJ27-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 69, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BJ27-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BJ27" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BJ35-1", "uniprot_ac": "A0A287BJ35", "uniprot_id": "A0A287BJ35_PIG", "mass": { "chemical_mass": 104733.0, "monoisotopic_mass": 104733.0 }, "refseq": { "ac": "XP_020921312", "name": "protocadherin-20", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921312" }, "gene_names": [ { "name": "PCDH20", "type": "recommended", "evidence": [ { "id": "A0A287BJ35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ35" } ] }, { "name": "PCDH20", "type": "synonym", "evidence": [ { "id": "XP_020921312", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921312" } ] } ], "protein_names": [ { "name": "Protocadherin-20", "type": "recommended", "evidence": [ { "id": "A0A287BJ35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ35/entry#names_and_taxonomy" } ] }, { "name": "protocadherin-20", "type": "synonym", "evidence": [ { "id": "XP_020921312", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921312" } ] } ], "function": [ { "annotation": "Potential calcium-dependent cell-adhesion protein.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ35", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ35#function" }, { "database": "UniProtKB", "id": "ARBA00037723", "url": "https://www.uniprot.org/uniprotkb/ARBA00037723#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ35", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ35" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PCDH20", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ35", "locus": { "chromosome": "11", "start_pos": 34384511, "end_pos": 34389730, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031955", "url": "https://www.ensembl.org/id/ENSSSCG00000031955" } ] } } ], "crossref": [ { "id": "ENSSSCG00000031955", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031955", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110255824", "url": "https://www.ncbi.nlm.nih.gov/gene/110255824", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255824", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255824", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IEHPAMD", "url": "https://omabrowser.org/oma/group/IEHPAMD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BJ35", "url": "https://www.orthodb.org/?gene=A0A287BJ35", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24028", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24028", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24028:SF260", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24028:SF260", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020921312", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921312", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BJ35", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJ35-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRGGGDVRSSRALAVSWSPATWHPRLDMGHPSRPRSSTSHRNLPHLLLFFLFVGPFNCLASYSRATELLYSLNEGLPAGVLIGSLAEDLRLVPRAGKQDPKSQLPEHSGAAEQNLPLSFSLASQGLSGQYVTLDNRSGELHTSAQEIDREALCLEGGGGAAWGGSISISSSPSADSCLLLLDVLVLPQEYFRFVKVKIAIRDVNDNAPQFPVSQISVWVPENAPVNTRLAIEHPATDPDIGTNGVQTYRLLDYHRMFTLDVEENENGERTPYLIVMGLLDRETQDQYVSIIIAEDGGSPPLLGSATLTIGISDINDNCPLFTDSQINVTVYGNATVGTPIAAVQAVDRDLGNNAEITYSYSQKVPQASKDLFHLDETTGVIKLFSKIGGSVLQTHKLTILANGPGCIPAVITALVTIIKVIFRPPEIVPRYIANEIDGIVYLKELEPVNTPIAFFTIRDPEGKYKVNCYLDGEGPFRLSPYKPYSNEYLLETTKTMDYELQQFYEIAVVAWNSEGFHVKKTIKVQLLDDNDNAPIFLQPLVELTIEENNAPNAFLAKLDATDADSGERGQVSYFLGPDAPAYFSLDSVTGILTVSTQLDREEKEKYRYTVRAVDSGKPPKESVATVAITVLDKNDNSPRFINKDFSFFVPENFPGYGEIGVISVTDADAGQNGWVALSVVNQSDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGEPPLSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLKKEPEINIEEKEPQISIEPTHRRFESVSCMPTLVALSVISLGSITLVTGMGIYICLRRGKKHHREEENLEVQIPLKGKIDLHMRERKPMDISNI", "length": 952, "header": "tr|A0A287BJ35-1|A0A287BJ35_PIG Isoform 1 of Protocadherin-20 OS=Sus scrofa OX=9823 GN=PCDH20 PE=4 SV=1 CANONICAL=A0A287BJ35-1" }, "isoforms": [ { "isoform_ac": "A0A287BJ35-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ35/entry#A0A287BJ35-1", "sequence": { "sequence": "MRGGGDVRSSRALAVSWSPATWHPRLDMGHPSRPRSSTSHRNLPHLLLFFLFVGPFNCLASYSRATELLYSLNEGLPAGVLIGSLAEDLRLVPRAGKQDPKSQLPEHSGAAEQNLPLSFSLASQGLSGQYVTLDNRSGELHTSAQEIDREALCLEGGGGAAWGGSISISSSPSADSCLLLLDVLVLPQEYFRFVKVKIAIRDVNDNAPQFPVSQISVWVPENAPVNTRLAIEHPATDPDIGTNGVQTYRLLDYHRMFTLDVEENENGERTPYLIVMGLLDRETQDQYVSIIIAEDGGSPPLLGSATLTIGISDINDNCPLFTDSQINVTVYGNATVGTPIAAVQAVDRDLGNNAEITYSYSQKVPQASKDLFHLDETTGVIKLFSKIGGSVLQTHKLTILANGPGCIPAVITALVTIIKVIFRPPEIVPRYIANEIDGIVYLKELEPVNTPIAFFTIRDPEGKYKVNCYLDGEGPFRLSPYKPYSNEYLLETTKTMDYELQQFYEIAVVAWNSEGFHVKKTIKVQLLDDNDNAPIFLQPLVELTIEENNAPNAFLAKLDATDADSGERGQVSYFLGPDAPAYFSLDSVTGILTVSTQLDREEKEKYRYTVRAVDSGKPPKESVATVAITVLDKNDNSPRFINKDFSFFVPENFPGYGEIGVISVTDADAGQNGWVALSVVNQSDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGEPPLSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLKKEPEINIEEKEPQISIEPTHRRFESVSCMPTLVALSVISLGSITLVTGMGIYICLRRGKKHHREEENLEVQIPLKGKIDLHMRERKPMDISNI", "length": 952, "header": "tr|A0A287BJ35-1|A0A287BJ35_PIG Isoform 1 of Protocadherin-20 OS=Sus scrofa OX=9823 GN=PCDH20 PE=4 SV=1 CANONICAL=A0A287BJ35-1" }, "locus": { "chromosome": "11", "start_pos": 34389726, "end_pos": 34385854, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051972.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051972.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056540.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056540.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ35", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ35" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110255824", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255824", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4ADD1-1", "protein_name": "Protocadherin-20", "gene_name": "Pcdh20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRGQGNARSSLVQAVSLRPATWHPCLDMGHLHRPSSRTSHRNLPHVVLLFLFVGPFNCLASYSRATELLYSLNEGLPAGVLIGSLAEDLRLLPRASGRQSQQLLHPERTAAEGNPPLSFSLASGGLSGQYVTLDNRSGELHTSAQEIDREALCLDGGGGAAWGGSTSIASSPSSDSCLLLLDVLVLPQEYFRFVKVKIAIRDINDNAPQFPISEISVWVPENSPVNTRLAIEHPAVDPDVGINGVQTYRLLDYHGMFTLDVEENENGERTPYLIVMGALDRETQDQYVSIIIAEDGGSPPLLGSATLTIGISDINDNCPLFIDSQINVTVYGNATVGTPVTTVQAVDRDLGTNAQITYSYSQKVPQESKELFHLDEVTGVVKLSSKIGGNVLQTHKLTILANGPGCIPAVITALVSIIKVVFRPPEIVPRYIANEMDGVVYLKELEPVNTPIAFFTIRDPEGKYKINCYLEGEGPFRLAPYKPYNNEYLLETTKPMDYELQPFYEIAVVAWNSEGFHDKRIIKVQLLDDNDNAPVFLQPLIELTIEENNAPNAFLTKLYATDADSGEMGRVSYFLGPDAPSYFSLDSVTGILTVSTQLDREEKEKYRYTVRAVDCGKPPRESVATVALTVLDKNDNSPRFINKDFSFFVPENFPGYGEIGVISVTDADAGRNGWVALSVMNQSDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGEPALSSTTKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPEINIEEKEPQISIKPTHRKVESMSCMPTLVALSVISLASITLVTGMGIYICLRKGKKHHREDDNLEVQIPLKGRIDLCMRERKPMDISNI", "length": 952 }, "evidence": [ { "id": "A0A287BJ35", "url": "https://omabrowser.org/oma/group/A0A287BJ35/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E7F9B5-1", "protein_name": "Protocadherin-20", "gene_name": "pcdh20", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MWNTKRRICLHSTGELWGLFILLLYSIPFSCSSNFSHLIYKIKEGLPKGTLIGAISADLTLDLSVNPSRSFSLEQMTTSEHYVNLNSTTGELFTSAIEIDRESLCAESHEGQGCAIFLDVLILPQQYFQLVKIKIIIEDINDNSPHFPMDEIRLSVPENAPVNARFAVEQSAVDPDIGIHSVQTYWLNNDYGVFTLDVEENEGGELTPFLILTESLDREARAEYVTEIIAEDGGSPPRFGNATLRIIISDVNDNCPKFRESQVKVTLYGNATKGMQLARLQAYDPDEGANALITYTFSERVSQESKSLFHLDTTTGVLKLAGKINNNSAKLYKINILANGAGCIPDVAMVSVHVIKQLSGPPTVVPRYIAFEKDGVVSLSESEPPFSPIAFFTIKNTEAQQKLECFLESAGPFRIVPYQGLKNEYLLETTDVLDYELQQDYEIVIVVRNSHGLAVNTVVKVHVLDVNDNAPVFKQSFVEIAVEENNPPNTFLAQLQASDADSESRGQVYYQLGADAPTIFNIDSYTGVLTVSTSLDREEKETYRFMVRALDRGTPKKESIATVIITVQDRNDNSPRFINKDFTFFVPENFPGFGEIGVLTVTDADAGENGWVALSILNGSDIFVIDTGRGALRAKTPLDREQQGTYYVWIEAIDGGEPALSCVTMVTVLLLDVNDNPPTVLFPQSNQSFMLVLPSTVPGTSITEVYAVDRDTGMNAVIAYSIIKRTDGEPGSFDIDPYTGNITLRKALNSRGLYSLWVKVRDHGQPELYSTVLVNLFVNETVSNETLIQSLLPRVVDLDHGEAPPVKEGREGERVPNMCNEYKVILLALTATCMGLFLTVVSLVTYICCKKRKTKKKRQGTETLKLNHEMVEKNLLEISNI", "length": 881 }, "evidence": [ { "id": "A0A287BJ35", "url": "https://omabrowser.org/oma/group/A0A287BJ35/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1NY34-1", "protein_name": "Protocadherin-20", "gene_name": "PCDH20", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGWRGAKDVFHMERGVGEAVFEGLLGGRHLLLFLLFVGPFNCFASYSRATELFYSLNEGLPAGVLIGSLARDLRLPTAGGQRPAAPQPPLSFTLASRGLGGQYVHLDNRSGELHTSALEIDREALCMESGGSTVPGEGDTVSLSSSSSSPDSCLLLLDVLVLPQEYFRLVKVKIAIRDVNDNAPRFPVPHIHLSVPENAPVNTRLAIEHPALDPDVGTNGVQTYRLRDNYGVFTLDVEENESGERTPYLIVMGALDRETREEYVTVIIAEDGGTPPLVGSATLTIGISDINDNCPQFSDTQLNITLYGNSSLGTHVATVHAVDLDLGSNAQITYSYSQKVPQPSRDLFHLDESTGVITLSSKVDGNTPRLHRLIILGNGPGCIPAVITVLVTIIKVMMRPPEVVPRFIANEMEGVVYLKELEPINTPIAFFTIKDPDEKYKVNCYLDGDGPFRLSPYKPYNNEYLLETTKPLDYETQQLYEISVVAWNSEGFNVNKVIKIQVLDDNDNSPIFSQQLIELSIEENNVPNAFLTKLHATDADSGERGEVSYFLGPDAPSYFSLDKTTGVLTVATQLDREEKEKYRYTVKAVDSGFPPRESIATVTITVLDKNDNSPRFINKDFSFFVPENFPGFGEIGVISVTDADAGQNGWVALSVLNGSDIFVIDTGKGVLRAKVSLDREQQSSYVLWIEAVDGGDPALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPITEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEESLMQNDYGLYRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPDINIEEKQPQISVEPTHKKMESASCMPTLVALSIISLGSITLVTGMGIYICLRKGKKHHRADENLEVQIPLNGRINLHMLEKKPVEISNI", "length": 928 }, "evidence": [ { "id": "A0A287BJ35", "url": "https://omabrowser.org/oma/group/A0A287BJ35/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3X6Y5-1", "protein_name": "Protocadherin-20", "gene_name": "PCDH20", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGGGDACGSQAGAVSWSRATWRPRPDMGSLSRPSSSASHGNLPHLLLFFLFVGPFNCLASYSRATEILYSLNEGLPAGVLIGSLAEDLRLLPGAGGQDLLSQSPQHSVAERNPPLSFSLASQGLSGQYVTLDNRSGELHTSAQEIDREALCLEGGGGIAWGSSISISSSPSADSCLLLLDVLVLPQEYFRFVKVKIAIRDINDNAPRFPISQISVWVPENAPVNTRLAIEHPAVDPDMGTNGVQTYRLLDYHRMFTLDVEENENGERTPYLIVMGLLDRETQDQYVSVIIAEDGGSPPLIGSATLTIGISDINDNCPLFTDSQINITVYGNATVGTPIAAVQAVDRDLGNNAQITYSYSQKVPQASKDLFHLNENTGVIKLFSKIGGSVLQTHKLTILANGPGCIPAVITALVTIIKVIFRPPEIVPRYIANQIDGIIYLKELEPVNTPIAFFTIRDPEGKYKVNCYLDSEGPFRLLPYKPYSNEYLLETTKPMDYELQQFYEIAIVAWNSEGFQVKKMIKVQLLDDNDNAPVFLQPLVELTIEENNAPNAFLTKLDATDADSGERGQVSYFLGPDAPSYFSLDSVTGILTVSTQLDREEKEKYRYTVRAVDSGKPPQESVATVVITVLDKNDNSPRFINKDFSFFVPENFPGYGEIGVISVTDADTGQNGWVALSVVNQSDIFVIDTGKGLLRAKVSLDREQQSSYTLWVEAVDGGTPPLSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSLVTEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIENLLRKEPEISIEEKEPQISIEPTHRKAESVSCMPTLVALSVISLSSITFLTGMGICICLRREKKHHREDENLEVQTPLKGKIDLHMRERKPMDISNI", "length": 951 }, "evidence": [ { "id": "A0A287BJ35", "url": "https://omabrowser.org/oma/group/A0A287BJ35/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BIZ0-1", "protein_name": "Protocadherin-20", "gene_name": "Pcdh20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRGRGNARSLLVQAVSLRPATWHPCLDMGHLHRPSSRTSHRNLPHVFLLFLFVGPFNCLASYSRATELLYSLNEGLPAGVLIGSLAEDLRLLPRASGRQNQQLLHPERTASEGNPPLSFSLASGGLSGQYVTLNNRSGELHTSAQEIDREALCLDGGGGAAWAGSTSIASSPSSDSCLLLLDVLVLPQEYFRFVKVKIAIRDINDNAPQFPISEISVWVPENSPVNTRLAIEHPAVDPDVGINGVQTYRLLDYHGMFTLDVEENENGERTPYLIVMGALDRETQDQYVSIIIAEDGGSPPLLGSATLTIGISDINDNCPLFIDSQINVTVYGNATVGTPVATVQAVDRDLGTNAQITYSYSQKVPQETKDLFHLDEVTGVIKLSSKIGGSVLQTHKLTILANGPGCIPAVITALVSIIKVVFRPPEIVPRYIANEVDGVVYLKELEPVNTPIAFFTIRDPEGKYKINCFLDGEGPFRLAPYKPYNNEYLLETTKPMDYEVQSFYEIAVVAWNSEGFHVKRIIKVQLLDDNDNAPVFLQPLIELTIEENNAPNAFLTKLYATDADSGEMGRVSYFLGPDAPSYFSLDSVTGILTVSTQLDREEKEKYRYTVRAVDCGTPPRESVATVALTVLDKNDNSPRFINKDFSFFVPENFPGYGEIGVISVTDADAGRNGWVALSVMNQSDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGEPALSSTTKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPEINIEEKEPQISIEPTHRKVESMSCMPTLVALSVISLGSITLVTGMGIYICLRKGKKHHREDDNLEVQIPLKGKIDLCMRERKPVDISNI", "length": 952 }, "evidence": [ { "id": "A0A287BJ35", "url": "https://omabrowser.org/oma/group/A0A287BJ35/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N6Y1-1", "protein_name": "Protocadherin-20", "gene_name": "PCDH20", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRGRGNARSSQALGVSWCPATWHPRLDMGRLHRPRSSTSYRNLPHLFLFFLFVGPFSCLGSYSRATELLYSLNEGLPAGVLIGSLAEDLRLLPRSAGRPDPQSQLPERTGAEWNPPLSFSLASRGLSGQYVTLDNRSGELHTSAQEIDREALCVEGGGGTAWSGSVSISSSPSDSCLLLLDVLVLPQEYFRFVKVKIAIRDINDNAPQFPVSQISVWVPENAPVNTRLAIEHPAVDPDVGINGVQTYRLLDYHGMFTLDVEENENGERTPYLIVMGALDRETQDQYVSIIIAEDGGSPPLLGSATLTIGISDINDNCPLFTDSQINVTVYGNATVGTPIAAVQAVDKDLGTNAQITYSYSQKVPQASKDLFHLDENTGVIKLFSKIGGSVLESHKLTILANGPGCIPAVITALVSIIKVIFRPPEIVPRYIANEIDGVVYLKELEPVNTPIAFFTIRDPEGKYKVNCYLDGEGPFRLSPYKPYNNEYLLETTKPMDYELQQFYEVAVVAWNSEGFHVKRVIKVQLLDDNDNAPIFLQPLIELTIEENNSPNAFLTKLYATDADSEERGQVSYFLGPDAPSYFSLDSVTGILTVSTQLDREEKEKYRYTVRAVDCGKPPRESVATVALTVLDKNDNSPRFINKDFSFFVPENFPGYGEIGVISVTDADAGRNGWVALSVVNQSDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGEPALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPEINIEEKEPQISIEPTHRKVESVSCMPTLVALSVISLGSITLVTGMGIYICLRKGEKHPREDENLEVQIPLKGKIDLHMRERKPMDISNI", "length": 951 }, "evidence": [ { "id": "A0A287BJ35", "url": "https://omabrowser.org/oma/group/A0A287BJ35/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ35", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ35" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ35", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ35" } ], "pmid": "" }, { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ35", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ35" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ35", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ35" } ], "pmid": "" }, { "name": "cell adhesion molecule binding", "id": "GO:0050839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050839", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ35", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ35" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 327, "end_pos": 329, "annotation": "n_glycosylation_sequon" }, { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" }, { "start_pos": 681, "end_pos": 683, "annotation": "n_glycosylation_sequon" }, { "start_pos": 749, "end_pos": 751, "annotation": "n_glycosylation_sequon" }, { "start_pos": 804, "end_pos": 806, "annotation": "n_glycosylation_sequon" }, { "start_pos": 845, "end_pos": 847, "annotation": "n_glycosylation_sequon" }, { "start_pos": 850, "end_pos": 852, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BJ35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ35" }, { "id": "PS50268", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50268" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cadherin", "eco_id": "ECO_0000259", "start_pos": 64, "end_pos": 210, "start_aa": "Arg", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 }, { "start_pos": 327, "end_pos": 329 }, { "start_pos": 333, "end_pos": 335 }, { "start_pos": 681, "end_pos": 683 }, { "start_pos": 749, "end_pos": 751 }, { "start_pos": 804, "end_pos": 806 }, { "start_pos": 845, "end_pos": 847 }, { "start_pos": 850, "end_pos": 852 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BJ40-1", "uniprot_ac": "A0A287BJ40", "uniprot_id": "A0A287BJ40_PIG", "mass": { "chemical_mass": 46554.0, "monoisotopic_mass": 46554.0 }, "refseq": {}, "gene_names": [ { "name": "SCRN2", "type": "recommended", "evidence": [ { "id": "A0A287BJ40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ40" } ] } ], "protein_names": [ { "name": "Secernin-2", "type": "recommended", "evidence": [ { "id": "A0A287BJ40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ40/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ40", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ40" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SCRN2", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ40", "locus": { "chromosome": "12", "start_pos": 24090687, "end_pos": 24095130, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017521", "url": "https://www.ensembl.org/id/ENSSSCG00000017521" } ] } } ], "crossref": [ { "id": "A0A287BJ40", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BJ40", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017521", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017521", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519333", "url": "https://www.ncbi.nlm.nih.gov/gene/100519333", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519333", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519333", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QAQGWWG", "url": "https://omabrowser.org/oma/group/QAQGWWG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RWI8", "url": "https://www.orthodb.org/?gene=F1RWI8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12994", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12994", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12994:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12994:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03577", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03577", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BJ40", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJ40-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKI6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKI6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWI8", "url": "https://www.uniprot.org/uniprotkb/F1RWI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWI8-1", "url": "https://www.uniprot.org/uniprotkb/F1RWI8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASWSPDTPCSCDCFVSVPPASAIPAVIFAKNSDRPRDEVQEVVFVPAGTHAPGSRLQCTYIEVEQVPKTHAVILSRPSWLWGAEMGANEHGVCIGNEAVWTKEPVGEGEALLGMDLLRLALERGSSAQEALHVITGLLERYGQGGSCREDPTPFCYHNTFLLADRTEAWVLETAGRLWAAQRIQAGARNISNQLSIGTDLSAEHPKLRPHARAQGWWDGQGAFDFAQAFSLTQQPVRMEAAKARFQAGRLLLQQKQGAITAEVMMGILRDKASGICMDSGGFRTTASMVSLLPRDPTQPCVHFLTATPDPARSVFKPFIFGVGAAQAPLVLSPTFGAQDPVQTLPRFQTRVDRRHTLYCRHQVALGLMESEQDRGQQLRQKQQDLEQEGLEAVRGLLAGEWAPRPQELGGLFQAFVEKESQAYA", "length": 425, "header": "tr|A0A287BJ40-1|A0A287BJ40_PIG Isoform 1 of Secernin-2 OS=Sus scrofa OX=9823 GN=SCRN2 PE=1 SV=1 CANONICAL=A0A287BJ40-1" }, "isoforms": [ { "isoform_ac": "A0A287BJ40-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ40/entry#A0A287BJ40-1", "sequence": { "sequence": "MASWSPDTPCSCDCFVSVPPASAIPAVIFAKNSDRPRDEVQEVVFVPAGTHAPGSRLQCTYIEVEQVPKTHAVILSRPSWLWGAEMGANEHGVCIGNEAVWTKEPVGEGEALLGMDLLRLALERGSSAQEALHVITGLLERYGQGGSCREDPTPFCYHNTFLLADRTEAWVLETAGRLWAAQRIQAGARNISNQLSIGTDLSAEHPKLRPHARAQGWWDGQGAFDFAQAFSLTQQPVRMEAAKARFQAGRLLLQQKQGAITAEVMMGILRDKASGICMDSGGFRTTASMVSLLPRDPTQPCVHFLTATPDPARSVFKPFIFGVGAAQAPLVLSPTFGAQDPVQTLPRFQTRVDRRHTLYCRHQVALGLMESEQDRGQQLRQKQQDLEQEGLEAVRGLLAGEWAPRPQELGGLFQAFVEKESQAYA", "length": 425, "header": "tr|A0A287BJ40-1|A0A287BJ40_PIG Isoform 1 of Secernin-2 OS=Sus scrofa OX=9823 GN=SCRN2 PE=1 SV=1 CANONICAL=A0A287BJ40-1" }, "locus": { "chromosome": "12", "start_pos": 24094651, "end_pos": 24090841, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059823.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059823.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056624.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056624.2" } ] } }, { "isoform_ac": "A0A5G2QKI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ40/entry#A0A5G2QKI6-1", "sequence": { "sequence": "MASWSPDTPCSCDCFVSVPPASAIPAVIFAKNSDRPRDEVQEVVFVPAGTHAPGSRLQCTYIEVEQVPKTHAVILSRPSWLWGAEMGANEHGVCIGNEAVWTKEPVGEGEALLGMDLLRLALERGSSAQEALHVITGLLERYGQGGSCREDPTPFCYHNTFLLADRTEAWVLETAGRLWAAQRIQAGARNISNQLSIGTDLSAEHPKLRPHARAQGWWDGQGAFDFAQAFSLTQQPVRMEAAKARFQAGRLLLQQKQGAITAEVMMGILRDKASGICMDSGGFRTTASMVSLLPRDPTQPCVHFLTATPDPARSVFKPFIFGVGAAQAPLVLSPTFGAQDPVQTLPRFQTRVDRRHTLYCRHQVALGLMESEQVTPREWGLPSPTPIRFWEGEQTRELGRGASPLRVSCSCLCEMAATPLPLIWGGSLSPGLIATFPWAGSGPAAQAEAAGSGAGRPGGCAGAAGWGVGPTPPGAGRPLPGLCGEGEPSLCLSQAPPGLGQGAAAWA", "length": 507, "header": "tr|A0A5G2QKI6-1|A0A287BJ40_PIG Computationally mapped isoform of Secernin-2 OS=Sus scrofa OX=9823 GN=SCRN2 PE=1 SV=2 CANONICAL=A0A287BJ40-1" }, "locus": { "chromosome": "12", "start_pos": 24094651, "end_pos": 24090794, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088717.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088717.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065339.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065339.2" } ] } }, { "isoform_ac": "F1RWI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ40/entry#F1RWI8-1", "sequence": { "sequence": "MALRTKLEILEGERMASWSPDTPCSCDCFVSVPPASAIPAVIFAKNSDRPRDEVQEVVFVPAGTHAPGSRLQCTYIEVEQVPKTHAVILSRPSWLWGAEMGANEHGVCIGNEAVWTKEPVGEGEALLGMDLLRLALERGSSAQEALHVITGLLERYGQGGSCREDPTPFCYHNTFLLADRTEAWVLETAGRLWAAQRIQAGARNISNQLSIGTDLSAEHPKLRPHARAQGWWDGQGAFDFAQAFSLTQQPVRMEAAKARFQAGRLLLQQKQGAITAEVMMGILRDKASGICMDSGGFRTTASMVSLLPRDPTQPCVHFLTATPDPARSVFKPFIFGVGAAQAPLVLSPTFGAQDPVQTLPRFQTRVDRRHTLYCRHQVALGLMESEQDRGQQLRQKQQDLEQEGLEAVRGLLAGEWAPRPQELGGLFQAFVEKESQAYA", "length": 439, "header": "tr|F1RWI8-1|A0A287BJ40_PIG Computationally mapped isoform of Secernin-2 OS=Sus scrofa OX=9823 GN=SCRN2 PE=1 SV=2 CANONICAL=A0A287BJ40-1" }, "locus": { "chromosome": "12", "start_pos": 24095076, "end_pos": 24090841, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019075.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019075.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018569.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018569.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKI6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKI6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519333", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519333", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZU99-1", "protein_name": "Secernin-2", "gene_name": "SCRN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGHDPAPSCCDCFVALPPHTAAPAVVFGKNADRPRHEVQEIAYIPSAVHRPGDKVQCTYIEIEQAERTHAVVLSRPAWLWGAEMGANEHGVCVGNEGVWTREPVGEGEALLGMDLVRLGLERGGSAREALEVITALLEQHGQGGSCKEEPIPFVYHNTFLLADRHEAWVLETAGRYWAAQQIREGSRNISNQLSIGTDITAEHPGLRQRAQSQGWWSGVGQFSFAEVFSLAQQPPRMEAAKSRYRAGKELLQQHAGRITAETFMAILRDKDSGICVDSEGFRTAGSMVSVLPQDPALPCVHFFTATPDPSRSVFKPFVFVPGLKPAPQVSSPTFSDDPAKKVPRFQSTVDRRHELYCRHQAALELMEKDQERGQELLQTLRDLEKQGLEAVNALLAGNVAPKPEELAELFFDCVDAEMKFYK", "length": 423 }, "evidence": [ { "id": "A0A287BJ40", "url": "https://omabrowser.org/oma/group/A0A287BJ40/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5TYS5-1", "protein_name": "Secernin-2", "gene_name": "scrn2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAEPPRSCDCFVSLPPGSKEDYVIFGKNSDRPRDEVQEVVYFPASSHPPASTVECTYISIPQVEHTNAVVLSRPAWLWGAEMGANEHGVCVGNEAVWTKEPVNPEEALLGMDLVRLGLERGDSARAALNVITALLEQFGQGGACRETSEPFSYHNTFLLVDRQEAWVLETAGKLWAAQKVTEGVKNISNQLTIDFEISAEHPDLRSVAQAQGWWSGEGDFSFTAVFSPDHPPARMEMAKQRYRGGTALLQQHNGSVTAEVMMSILRDKASGICMDSEGFRTTGSMVSILPRNPNMPCVHFLTATPDPSRSVFKPFIFSESVRPVSMVMSPQYGPGDPVRTLPRFQHQVDRKHELYKAHQMANTSSDAGVSLQDTMRYLESQCLEEIEAMLRGEVQGQELGDLFFDCVDAEIKFYQ", "length": 415 }, "evidence": [ { "id": "A0A287BJ40", "url": "https://omabrowser.org/oma/group/A0A287BJ40/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6AYR8-1", "protein_name": "Secernin-2", "gene_name": "Scrn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASSSPDAPCSCDCFVSVPPASAIPAVIFAKNSDRPRDEVQEVVFIPAGTHTPGSRLQCTYIEVEQVWKTHAVILSRPSWLWGAEMGANELGVCIGNEAVWTKEPVGEGEALLGMDLLRLALERSSTAQAAVHVIAGLLDRYGQGGSCREDPEPFCYHNTFLLADRTEAWVLETAGRLWAAQRIQGGARNISNQLSIGTDISAEHPELRSHAKAQGWWSGQGVFDFAEVFSLTQQPVRMEAAKARFRAGCEMLQRQQGSITAEVMMDILRNKESGICMDSGGFRTTASMVSVLPQDPTKPCVHFLTATPDPSRSVFKPFIFEVGVSQPPQVLSPTFGAQDPVRILPRFQTQVDRRHSLYRGHQAALGLMDEQEQAQLRQEQQSLEQEGLEALRGLLTGEQTPAPQELGSLFQAFVEREHQVYA", "length": 423 }, "evidence": [ { "id": "A0A287BJ40", "url": "https://omabrowser.org/oma/group/A0A287BJ40/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8VCA8-1", "protein_name": "Secernin-2", "gene_name": "Scrn2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSSPDAPCSCDCFVSVPPASAIPAVIFAKNSDRPRDEVQEVVFIPAGTHVPGSRLQCTYIEVEQVGKTHAVILSRPSWLWGAEMGANELGVCIGNEAVWTKEPVGQGEALLGMDLLRLALERSSTAQEAVHVIAGLLDRYGQGGSCREDPEPFCYHNTFLLADRTEAWVLETAGSLWAAQRIQGGARNISNQLSIGTDISAEHPELRSHAKAQGWWTGQGLFDFAEVFSLTQQPVRMEAAKARFRAGCEMLQRHQGNITAEVMMGILRDKESGICMDSGGFRTTASMVSVLPQDPTKPCVHFLTATPDPSRSVFKPFIFEVGVSQSPQVLSPTFGAQDPVRILPRFQTRVDRRHSLYRGHQAALGLMEDEQEQAQQLRKKQQRLEQEGLEALRGLLTGEQTPPAQGLGSLFQAFVEREEQAYA", "length": 425 }, "evidence": [ { "id": "A0A287BJ40", "url": "https://omabrowser.org/oma/group/A0A287BJ40/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96FV2-1", "protein_name": "Secernin-2", "gene_name": "SCRN2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASSSPDSPCSCDCFVSVPPASAIPAVIFAKNSDRPRDEVQEVVFVPAGTHTPGSRLQCTYIEVEQVSKTHAVILSRPSWLWGAEMGANEHGVCIGNEAVWTKEPVGEGEALLGMDLLRLALERSSSAQEALHVITGLLEHYGQGGNCLEDAAPFSYHSTFLLADRTEAWVLETAGRLWAAQRIQEGARNISNQLSIGTDISAQHPELRTHAQAKGWWDGQGAFDFAQIFSLTQQPVRMEAAKARFQAGRELLRQRQGGITAEVMMGILRDKESGICMDSGGFRTTASMVSVLPQDPTQPCVHFLTATPDPSRSVFKPFIFGMGVAQAPQVLSPTFGAQDPVRTLPRFQTQVDRRHTLYRGHQAALGLMERDQDRGQQLQQKQQDLEQEGLEATQGLLAGEWAPPLWELGSLFQAFVKRESQAYA", "length": 425 }, "evidence": [ { "id": "A0A287BJ40", "url": "https://omabrowser.org/oma/group/A0A287BJ40/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ40", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ40" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "dipeptidase activity", "id": "GO:0016805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016805", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ40", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ40" } ], "pmid": "" }, { "name": "cysteine-type exopeptidase activity", "id": "GO:0070004", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070004", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ40", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ40" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ40", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ40" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 190, "end_pos": 192, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJY8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPVLLPLLLLLGPAVPKETQTGPYTLSFLYTGLSRPGKGFPSFQAMAYLNDQPFFRYESDGRKAEPLGPWSQVEGMEDWEKESELQKAREDIFMATLRDIMDYYKDREGSHTFQGRFGCELRNDQRQAAFWRYAYDGRDFIEFNKEIPAWVALDPAAVNTKLKWEAEAVYVQRAKAYLEEECPGMLRRYLEHGRGHLDQQALPPCRSPATWPQDRTGPSSAWPMTSTQEESVCAGLALVEHKRLSLGETFFPVEMALTSPGWWWGSPSGQSPSLVPRGAQQPGPAPHCPLGRAARTEGGRQHWDSGPVGALAVGQEPCELWQCQPRRAARPRGPGVDSQKSASTGHHHC", "length": 350, "header": "tr|A0A287BJ64-1|A0A287BJ64_PIG Isoform 1 of Alpha-2-glycoprotein 1, zinc-binding OS=Sus scrofa OX=9823 GN=AZGP1 PE=1 SV=1 CANONICAL=A0A287BJ64-1" }, "isoforms": [ { "isoform_ac": "A0A287BJ64-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ64/entry#A0A287BJ64-1", "sequence": { "sequence": "MAPVLLPLLLLLGPAVPKETQTGPYTLSFLYTGLSRPGKGFPSFQAMAYLNDQPFFRYESDGRKAEPLGPWSQVEGMEDWEKESELQKAREDIFMATLRDIMDYYKDREGSHTFQGRFGCELRNDQRQAAFWRYAYDGRDFIEFNKEIPAWVALDPAAVNTKLKWEAEAVYVQRAKAYLEEECPGMLRRYLEHGRGHLDQQALPPCRSPATWPQDRTGPSSAWPMTSTQEESVCAGLALVEHKRLSLGETFFPVEMALTSPGWWWGSPSGQSPSLVPRGAQQPGPAPHCPLGRAARTEGGRQHWDSGPVGALAVGQEPCELWQCQPRRAARPRGPGVDSQKSASTGHHHC", "length": 350, "header": "tr|A0A287BJ64-1|A0A287BJ64_PIG Isoform 1 of Alpha-2-glycoprotein 1, zinc-binding OS=Sus scrofa OX=9823 GN=AZGP1 PE=1 SV=1 CANONICAL=A0A287BJ64-1" }, "locus": { "chromosome": "3", "start_pos": 7874772, "end_pos": 7867694, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050499.2", "url": "https://www.ensembl.org/id/ENSSSCT00000050499.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056197.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056197.1" } ] } }, { "isoform_ac": "A0A8W4FJY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ64/entry#A0A8W4FJY8-1", "sequence": { "sequence": "GICPHLPLIKLPLPASLPKWPYTLSFLYTGLSRPGKGFPSFQAMAYLNDQPFFRYESDGRKAEPLGPWSQVEGMEDWEKESELQKAREDIFMATLRDIMDYYKDREGSHTFQGRFGCELRNDQRQAAFWRYAYDGRDFIEFNKEIPAWVALDPAAVNTKLKWEAEAVYVQRAKAYLEEECPGMLRRYLEHGRGHLDQQALPPCRSPATWPQDRTGPSSAWPMTSTQEESVCAGLALVEHKRLSLGETFFPVEMALTSPGWWWGSPSGQSPSLVPRGAQQPGPAPHCPLGRAARTEGGRQHWDSGPVGALAVGQEPCELWQCQPRRAARPRGPGVDSQKSASTGHHHC", "length": 347, "header": "tr|A0A8W4FJY8-1|A0A287BJ64_PIG Computationally mapped isoform of Alpha-2-glycoprotein 1, zinc-binding OS=Sus scrofa OX=9823 GN=AZGP1 PE=1 SV=1 CANONICAL=A0A287BJ64-1" }, "locus": { "chromosome": "3", "start_pos": 7874772, "end_pos": 7869184, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106721.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106721.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079776.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079776.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FJY8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJY8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5223345", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5223345", "resource": "Reactome", "description": "Miscellaneous transport and binding events" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "antigen processing and presentation of endogenous peptide antigen via MHC class Ib", "id": "GO:0002476", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002476", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ64", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ64" } ], "pmid": "" }, { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ64", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ64" } ], "pmid": "" }, { "name": "antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent", "id": "GO:0002486", "url": 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} ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BJ64-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 350, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BJ64-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BJ64" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BJ64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ64" }, { "id": "PF00129", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00129" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MHC class I-like antigen recognition-like", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 197, "start_aa": "Pro", "end_aa": "His", 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BJ78-1", "uniprot_ac": "A0A287BJ78", "uniprot_id": "A0A287BJ78_PIG", "mass": { "chemical_mass": 212140.0, "monoisotopic_mass": 212140.0 }, "refseq": { "ac": "XP_005670925", "name": "protein PRR14L isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670925" }, "gene_names": [ { "name": "PRR14L", "type": "recommended", "evidence": [ { "id": "A0A287BJ78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ78" } ] }, { "name": "PRR14L", "type": "synonym", "evidence": [ { "id": "XP_005670925", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670925" } ] } ], "protein_names": [ { "name": "Proline rich 14 like", "type": "synonym", "evidence": [ { "id": "A0A287BJ78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ78/entry#names_and_taxonomy" } ] }, { "name": "protein PRR14L isoform X4", "type": "synonym", "evidence": [ { "id": "XP_005670925", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670925" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ78", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ78" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PRR14L", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ78", "locus": 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"MQASQELLCTDLPEGCLRSKEGNVQISTGTLLKSTEEVQGMKVSGPKMNNSEGHNNSHVSKGLSDGCSSCPEADKIMTSAEISLEPLNFVDPGLMEATPTEKECEELKTCPSWLPLLPGNIAISTVDHGKEELCRLNLVCEADDNHQQNLGHHNERYSSVHGSPKTTKSVVILEPLEENPEVSHFTSSLSGPESRTESSDKCDLEGDSLPKGSAEKTDKSCFNGDDQSKNVASREENEQPLSPRSEREELFLVNAKQLEEDASSHCLGKKETVNFPKGNIHDNCCPLGSVHKDSSNSLMPNSFTEATEVMSKKNDLKMTLDIHGSLANQEDQGGTFSNMSHPGTGPEESHSSSLIQIEEPEHTATAEPHVLREKIYSKDCHSISTQRNLEGSTQSNEASHNGFQIERKSPMSLTPEDQMSSTNEVSKPEKDIALSPPSLECDNRSESEMALRNSQDDSSQLDKQSTAWEVNELLCTKMGSECLLNQVFLNSPNHTKLPTDKEMPVAVSKGCQQSQRAPLEDCADVTAGTQTIPGKTKMKDISPPGDQTCGTSSNNSTLNGIPGSLERKSKTADSRATNLSSRLLSNENEAVGLPQEGSAVECQSAQSQALSSCLCVRKHVPDEMCSAYVLESSTALVGVENLLTTMYENVFQYSDHHPQGKEGSVPHKVSCTLLEGEPDGGGTKGSLPGSKTRNEMTAGMLNSEASNKTIPTIQPSEKGLEEKEQDIPKEAMFCKHNISDWAIQEPNQPSNIPSPEKLLDQFPTLRFSNVKIMNPTADTLEQKADGALDCQGNPHRPDECRGEDSPARETLGRDQRETVTEPTREGSHPQKDLPVSPGSNSCVSGGIAKKGALKRIPGCEASTDGMVDVFPPVCSNKPPEGILDATASSTLTGGARRDGPMSCEPSRSPLPQTGELTTMVMEMINQDSDHQEATSSTAESFNAEKSCEEKVCRSLKDCDLEVCPDSCDHEVESVADHEPNVRMLRGVNVSLNYTLGEQQVKEASLTETQGMIEGSRLEINAECGKENTTGLCSEELLPSHCPDENSVPLGSLKFTKIIMPLHLSSFQEKQTFMHGEETDSKNLFKPKDGEMLCEKVKDYTVLHEMKEGAPGDRSNPGNPAISVKGLPLTVATEVEVKGEDTGHQRGPWGHLPVEEESVIRQSGHGEDGREVSQPHLTSLGMPGDTQEQQSQEALDYREEEQMHQEKAHPTLELCTAANALSHEVPRKSQPEGCGDEPSTLREVALAEPATGNTTARLWKSRDLMEESLCHPFKKDVESCTGPCLRGVPLKAHDPTSAGCQGLQGAFGDTSRRKGALLVKKQPHRTCKKISYREQVSVGRKISKIRSSAFLKSSSETISTKAHRSLSSCTTPVPTPPGPETAPARSLVSPIPKPMALPDQSPGALNVRKPTKESALLSKLSVLASRLALATGTQKPRSRWCSSDLLPVAKSYKRLRYKRLLDGFSHSTTQLSPCLAVSGWDKRPNSTPLTLYSLEAIKMSFTDLSDKMPTLLFGSEIFPVSFHVKPGSQHGTEPPRAFPEHCAPARLTLGEAPRCPPQPPKWTFSFFLAHGCPGVATFKEDTGLHSQAGAQPPAPLQDHRATAIVQTRAGCSILGLHTLLALCSPGCYRIWTKKRSCSSHMPTMQRLFMTQFTQGLKGLRSPASIADKVFCSLPYSVGRVLSLWSQHGPSAYPLEVSVLHPTHSKLQPSLGTTSSHTMLPYVPLPGLEAAYSTGSSHMRLEPPFPALVPKSCLVTDPAVSQLLLSASEFPVPGFDELDGVTPSCPRPQSSPPEQKEAEPEKRPKKVSQIRIRKTIPKPDPNLTPMGLPRPKRLKKKEFSLEEIYTNKNYKSPPANRCLETIFEEPKERNGTLISISQQKRKRVLEFQDFTVPRKRRARGKVKVAGSFTRAQKAALQSRELDALLLQKLMELETFFAKEEEQEQSSGC", "length": 1946, "header": "tr|A0A287BJ78-1|A0A287BJ78_PIG Isoform 1 of Proline rich 14 like OS=Sus scrofa OX=9823 GN=PRR14L PE=4 SV=2 CANONICAL=A0A287BJ78-1" }, "locus": { "chromosome": "14", "start_pos": 48391177, "end_pos": 48356295, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037841.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037841.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056212.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056212.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1374, "start_aa": "Thr", "end_pos": 1374, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1374", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ78", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ78" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1027, "end_pos": 1029, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1252, "end_pos": 1254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1484, "end_pos": 1486, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1820, "end_pos": 1822, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1868, "end_pos": 1870, "annotation": "n_glycosylation_sequon" }, { "start_pos": 338, "end_pos": 340, "annotation": "n_glycosylation_sequon" }, { "start_pos": 443, "end_pos": 445, "annotation": "n_glycosylation_sequon" }, { "start_pos": 493, "end_pos": 495, "annotation": "n_glycosylation_sequon" }, { "start_pos": 49, "end_pos": 51, "annotation": "n_glycosylation_sequon" }, { "start_pos": 554, "end_pos": 556, "annotation": "n_glycosylation_sequon" }, { "start_pos": 555, "end_pos": 557, "annotation": "n_glycosylation_sequon" }, { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" }, { "start_pos": 578, "end_pos": 580, "annotation": "n_glycosylation_sequon" }, { "start_pos": 707, "end_pos": 709, "annotation": "n_glycosylation_sequon" }, { "start_pos": 737, "end_pos": 739, "annotation": "n_glycosylation_sequon" }, { "start_pos": 988, "end_pos": 990, "annotation": "n_glycosylation_sequon" }, { "start_pos": 992, "end_pos": 994, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BJ78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ78" }, { "id": "PF15386", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15386" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tantalus-like", "eco_id": "ECO_0000259", "start_pos": 1821, "end_pos": 1878, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1374 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1027, "end_pos": 1029 }, { "start_pos": 1252, "end_pos": 1254 }, { "start_pos": 1484, "end_pos": 1486 }, { "start_pos": 1820, "end_pos": 1822 }, { "start_pos": 1868, "end_pos": 1870 }, { "start_pos": 338, "end_pos": 340 }, { "start_pos": 443, "end_pos": 445 }, { "start_pos": 493, "end_pos": 495 }, { "start_pos": 49, "end_pos": 51 }, { "start_pos": 554, "end_pos": 556 }, { "start_pos": 555, "end_pos": 557 }, { "start_pos": 55, "end_pos": 57 }, { "start_pos": 578, "end_pos": 580 }, { "start_pos": 707, "end_pos": 709 }, { "start_pos": 737, "end_pos": 739 }, { "start_pos": 988, "end_pos": 990 }, { "start_pos": 992, "end_pos": 994 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"A0A287BJ85", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BJ85", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030637", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030637", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR030385", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030385", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040070", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RTHFPGP", "url": "https://omabrowser.org/oma/group/RTHFPGP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR19364", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19364", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19364:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19364:SF2", "database": "PANTHER", 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"MGVITENERRVQDERLKSETRVGRLGKKKVECFLTQVLSPCFLAMPSPRGDVTVLFLGPPGSGKSALIAALCDKDVETIEIPDKRPDSGLPSLRAAGPGLFLGELSCPPAAPGPWAAEANVLVLVLLGPEGNGEPLAPALGEAARAALARGTPLLAVRNLGPGESQNEAQARDQTAALLDSAGLGAAALFVLPTDCRSSEGSEELERLRTALRSQAEALQRLLPPAQDGFEVLGAAELEAVREAFETGGLEAALSWVRAGLERLGSARLDLAVAGRADMGLVLNVLLGLDTDDPGAVPASVPESPTSYPAPERPNVVLWTVPLGSMGTAAVPHPTHYDAVILVTPGAPTEKDWAQVRPLVLPDTPLVCVRTDGKGEDPESLGEEEKTEKPRGESLENAGGGGGKNARSEGRETPGTGSQKAGCGEGSSSESLQPIAVGATKAGSGDSERTAPVSPEDEAWEVLEEAPPPVFPLRPGGLPGLCEWLRRALPPAQAGALLLALPPASPQAARTKAAALRAGAWRPALLASLAAAAAPVPGLGWACDVALLRGQLRSGGERWGSNPRRWHVGSEPWASRPGSYPSGRASPVP", "length": 589, "header": "tr|A0A287BJ85-1|A0A287BJ85_PIG Isoform 1 of Immunity related GTPase Q OS=Sus scrofa OX=9823 GN=IRGQ PE=1 SV=1 CANONICAL=A0A287BJ85-1" }, "isoforms": [ { "isoform_ac": "A0A287BJ85-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ85/entry#A0A287BJ85-1", "sequence": { "sequence": "MGVITENERRVQDERLKSETRVGRLGKKKVECFLTQVLSPCFLAMPSPRGDVTVLFLGPPGSGKSALIAALCDKDVETIEIPDKRPDSGLPSLRAAGPGLFLGELSCPPAAPGPWAAEANVLVLVLLGPEGNGEPLAPALGEAARAALARGTPLLAVRNLGPGESQNEAQARDQTAALLDSAGLGAAALFVLPTDCRSSEGSEELERLRTALRSQAEALQRLLPPAQDGFEVLGAAELEAVREAFETGGLEAALSWVRAGLERLGSARLDLAVAGRADMGLVLNVLLGLDTDDPGAVPASVPESPTSYPAPERPNVVLWTVPLGSMGTAAVPHPTHYDAVILVTPGAPTEKDWAQVRPLVLPDTPLVCVRTDGKGEDPESLGEEEKTEKPRGESLENAGGGGGKNARSEGRETPGTGSQKAGCGEGSSSESLQPIAVGATKAGSGDSERTAPVSPEDEAWEVLEEAPPPVFPLRPGGLPGLCEWLRRALPPAQAGALLLALPPASPQAARTKAAALRAGAWRPALLASLAAAAAPVPGLGWACDVALLRGQLRSGGERWGSNPRRWHVGSEPWASRPGSYPSGRASPVP", "length": 589, "header": "tr|A0A287BJ85-1|A0A287BJ85_PIG Isoform 1 of Immunity related GTPase Q OS=Sus scrofa OX=9823 GN=IRGQ PE=1 SV=1 CANONICAL=A0A287BJ85-1" }, "locus": { "chromosome": "6", "start_pos": 50441626, "end_pos": 50437993, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063978.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063978.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056130.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056130.1" } ] } }, { "isoform_ac": "A0A5G2RAK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ85/entry#A0A5G2RAK1-1", "sequence": { "sequence": "MPSPRGDVTVLFLGPPGSGKSALIAALCDKDVETIEIPDKRPDSGLPSLRAAGPGLFLGELSCPPAAPGPWAAEANVLVLVLLGPEGNGEPLAPALGEAARAALARGTPLLAVRNLGPGESQNEAQARDQTAALLDSAGLGAAALFVLPTDCRSSEGSEELERLRTALRSQAEALQRLLPPAQDGFEVLGAAELEAVREAFETGGLEAALSWVRAGLERLGSARLDLAVAGRADMGLVLNVLLGLDTDDPGAVPASVPESPTSYPAPERPNVVLWTVPLGSMGTAAVPHPTHYDAVILVTPGAPTEKDWAQVRPLVLPDTPLVCVRTDGKGEDPESLGEEEKTEKPRGESLENAGGGGGKNARSEGRETPGTGSQKAGCGEGSSSESLQPIAVGATKAGSGDSERTAPVSPEDEAWEVLEEAPPPVFPLRPGGLPGLCEWLRRALPPAQAGALLLALPPASPQAARTKAAALRAGAWRPALLASLAAAAAPVPGLGWACDVALLRGQLRSGGERWGSNPRRWHVGSEPWASRPGSYPSGRASPVP", "length": 545, "header": "tr|A0A5G2RAK1-1|A0A287BJ85_PIG Computationally mapped isoform of Immunity related GTPase Q OS=Sus scrofa OX=9823 GN=IRGQ PE=1 SV=1 CANONICAL=A0A287BJ85-1" }, "locus": { "chromosome": "6", "start_pos": 50441494, "end_pos": 50437993, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081807.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081807.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074052.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074052.1" } ] } }, { "isoform_ac": "I3LDI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ85/entry#I3LDI3-1", "sequence": { "sequence": "MTSAMPSPRGDVTVLFLGPPGSGKSALIAALCDKDVETIEIPDKRPDSGLPSLRAAGPGLFLGELSCPPAAPGPWAAEANVLVLVLLGPEGNGEPLAPALGEAARAALARGTPLLAVRNLGPGESQNEAQARDQTAALLDSAGLGAAALFVLPTDCRSSEGSEELERLRTALRSQAEALQRLLPPAQDGFEVLGAAELEAVREAFETGGLEAALSWVRAGLERLGSARLDLAVAGRADMGLVLNVLLGLDTDDPGAVPASVPESPTSYPAPERPNVVLWTVPLGSMGTAAVPHPTHYDAVILVTPGAPTEKDWAQVRPLVLPDTPLVCVRTDGKGEDPESLGEEEKTEKPRGESLENAGGGGGKNARSEGRETPGTGSQKAGCGEGSSSESLQPIAVGATKAGSGDSERTAPVSPEDEAWEVLEEAPPPVFPLRPGGLPGLCEWLRRALPPAQAGALLLALPPASPQAARTKAAALRAGAWRPALLASLAAAAAPVPGLGWACDVALLRGQLRSGGERWGSNPRRWHVGSEPWASRPGSYPSGRASPVP", "length": 549, "header": "tr|I3LDI3-1|A0A287BJ85_PIG Computationally mapped isoform of Immunity related GTPase Q OS=Sus scrofa OX=9823 GN=IRGQ PE=1 SV=2 CANONICAL=A0A287BJ85-1" }, "locus": { "chromosome": "6", "start_pos": 50441959, "end_pos": 50437993, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032158.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032158.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022114.2", "url": "https://www.ensembl.org/id/ENSSSCP00000022114.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 344, "start_aa": "Thr", "end_pos": 344, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr344", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LDI3", "url": "https://www.uniprot.org/uniprotkb/I3LDI3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MAH9-1", "protein_name": "Immunity related GTPase Q", "gene_name": "IRGQ", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTSAMPPPRGDVTVLFLGPPGSGKSALIAALCDRDVETVEIPDGRPDSGLPSLRAAGPGLFLGELSCPPAEPGPWAAEANVLVLVLPGPEGNEEPLAPALGEAARAALARGTPLLAVRNLRPEESQNEAQARDQTAALLDSAGLGAAALFVPRTDCLSTDGCEELERLRAALRSQAEALQRLLPPAQDGFEVLGAAELEAVREAFETGGLEAALSWVRAGLERLGSARLDLAVAGRADVGLVLNVLLGLDPEDPGAVPAAAPAGPTPYPTPERPNVVLWSVPLSSADTTVAPYPTTHYDALILVTPGAPTEKDWAQVRPLVLPDTPLVCVRTDGEGEDPESLEEEEKAEKSGSESLENADGEGFENARSDGKENRGPGLQKGGSGEGSEEAGTESLQPVGVSTKKSGSGDSERAAALSPEDETWEVLEEAPPPVFPLQPAGLPGLCEWLRRALPAAQAGALLLALPPASSRAARTKAAALRAGAWRPALLASLAAAAAPVPGLGWACDVALLRGQLAEWRRALGLEPAALARRERALGLAPGELAKRTRFPGPVTRAEVEARLGSWAGEGTAGGAALGALSFLWPAGGAAATGGLGYRAAHGVLLQALDEMCADAEAVLAPQVPAQ", "length": 626 }, "evidence": [ { "id": "A0A287BJ85", "url": "https://omabrowser.org/oma/group/A0A287BJ85/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8I5ZUT2-1", "protein_name": "Immunity-related GTPase Q", "gene_name": "Irgq", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPLPQGDVTALFLGPPGSGKSALIAALCGKNVDAVEIPDGRPDSGVPSLRAAAPGLFLGELSCPPAAPGPWAAEANLLVLVLPGSEGSEEPLTPALGEAARAALARGTPLLAVRNLRPGDSQNAAQARDETAALLDSAGLGAAPLFVLPADCSSSDGCEELERLQVVLRTQAEALQRLLPPAQDGFEVLGAAELEAVREAFETGGLEAALSWVRAGLERLGSARVDLAVAGTTNVGLVLDMLLGLEPGDAGAAPASAPTEPTPYPAPERPNVVLWTVPLGPTATSPAVTPHPTHYDALILVTPGAPTEENWAQVRSLVSPDAPLVGVRTDGQGEDPPEVLEEEKAGNARDGNSGDARSEGKKPGIGDSGCSAVRSPEDEQWEVLEEAPPPVFPLRPGGLPGLGTWLQRALPTAQAGALLLALPPASPRAARRKAAALRAGAWRPALLASLAAAAAPVPGLGWACDVALLRGQLAEWRRALGIEPAAVARRERALGLAPGVLATRTRFPGPVTRAEVEARLGSWAGEGTAGGAALGALSFLWPAGGAAATGGLGYRAAHGVLLQALDEMLADAEAVLGPPEHNQ", "length": 583 }, "evidence": [ { "id": "A0A287BJ85", "url": "https://omabrowser.org/oma/group/A0A287BJ85/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8VIM9-1", "protein_name": "Immunity-related GTPase family Q protein", "gene_name": "Irgq", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPLPQGDVTALFLGPPGSGKSALIAALCGKNVDTVEIPDGRQDSGVPSLRAAAPGLFLGELSCPPAAPGPWAAEANLLVLVLPGSEGSEEPLTPALGEAARAALARGTPLLAVRNLRPGDSQNAAKARDETAALLNSAGLGAAPLFVPPADCSSSDRCEELERLQVVLRTQAEALQRLLPPAQDGFEVLGAAELEAVREAFETGGLEAALSWVRAGLERLGSARLDLAVAGTTNVGLVLDMLLGLDPGDPGAAPASAPTGPTPYPAPERPNVVLWTVPLGPTATSPAVTPHPTHYDALILVTPGAPTEENWAQVRSLVSPDAPLVGVRTDGQGEDPPEVLEEEKAQNASDGNSGDARSEGKKAGIGDSGCTAARSPEDELWEVLEEAPPPVFPMRPGGLPGLGTWLQHALPTAQAGALLLALPPASPRAARRKAAALRAGAWRPALLASLAAAAAPVPGLGWACDVALLRGQLAEWRRALGLEPAAVARRERALGLAPGVLATRTRFPGPVTRAEVEARLGSWAGEGTAGGAALSALSFLWPTGGAAATGGLGYRAAHGVLLQALDEMLADAEAVLGPPEPNQ", "length": 583 }, "evidence": [ { "id": "A0A287BJ85", "url": "https://omabrowser.org/oma/group/A0A287BJ85/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WZA9-1", "protein_name": "Immunity-related GTPase family Q protein", "gene_name": "IRGQ", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPPPQGDVTALFLGPPGLGKSALIAALCDKDVETLEAPEGRPDSGVPSLRAAGPGLFLGELSCPPAAPGPWAAEANVLVLVLPGPEGNGEPLAPALGEAALAALARGTPLLAVRNLRPGDSQTAAQARDQTAALLNSAGLGAADLFVLPANCGSSDGCEELERLRAALQSQAEALRRLLPPAQDGFEVLGAAELEAVREAFETGGLEAALSWVRSGLERLGSARLDLAVAGKADVGLVVDMLLGLDPGDPGAAPASVPTAPTPFPAPERPNVVLWTVPLGHTGTATTAAAASHPTHYDALILVTPGAPTEKDWAQVQALLLPDAPLVCVRTDGEGEDPECLGEGKMENPKGESLKNAGGGGLENALSKGREKCSAGSQKAGSGEGPGKAGSEGLQQVVGMKKSGGGDSERAAALSPEDETWEVLEEAPPPVFPLRPGGLPGLCEWLRRALPPAQAGALLLALPPASPSAARTKAAALRAGAWRPALLASLAAAAAPLPGLGWACDVALLRGQLAEWRRGLGLEPTALARRERALGLASGELAARAHFPGPVTRAEVEARLGAWAGEGTAGGAALGALSFLWPAGGAAATGGLGYRAAHGVLLQALDEMRADAEAVLAPPEPAQ", "length": 623 }, "evidence": [ { "id": "A0A287BJ85", "url": "https://omabrowser.org/oma/group/A0A287BJ85/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ85", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ85" } ], "pmid": "" }, { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ85", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ85" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ85", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ85" } ], "pmid": "" }, { "name": "autophagosome", "id": "GO:0005776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005776", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ85", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ85" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of autophagy", "id": "GO:0010508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010508", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ85", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ85" } ], "pmid": "" }, { "name": "substrate localization to autophagosome", "id": "GO:0061753", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061753", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ85", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ85" } ], "pmid": "" }, { "name": "protein quality control for misfolded or incompletely synthesized proteins", "id": "GO:0006515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006515", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ85", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ85" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], 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}, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 344 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": 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"Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BJJ5", "url": "https://www.uniprot.org/uniprotkb/A0A287BJJ5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM154", "url": "https://www.uniprot.org/uniprotkb/A0A287BJJ5", "locus": { "chromosome": "8", "start_pos": 76397771, "end_pos": 76355135, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009012", "url": "https://www.ensembl.org/id/ENSSSCG00000009012" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009012", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009012", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100627594", "url": "https://www.ncbi.nlm.nih.gov/gene/100627594", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627594", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627594", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BJJ5", "url": "https://www.orthodb.org/?gene=A0A287BJJ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36526", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36526", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36526:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36526:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15102", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15102", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003482470", "url": 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"MLRSADPQAPGAALVVALVIASLPTSQEQDDMEQPEHSAEIPLEVESQDEGTVTPSAFAAVTTETLPANISFPLIEEDGAQAEFMLMVLVPSILLALLLLSVVFLVIHRKRKRNKREPSSQGSHSALQTNELASENVKVPIFEEDTPSVMEIEMEELDKWMNSMNRNADYEGLPTLEEEKEPNHNSPSDNES", "length": 192, "header": "tr|A0A287BJJ5-1|A0A287BJJ5_PIG Isoform 1 of Transmembrane protein 154 OS=Sus scrofa OX=9823 GN=TMEM154 PE=4 SV=1 CANONICAL=A0A287BJJ5-1" }, "locus": { "chromosome": "8", "start_pos": 76395050, "end_pos": 76355180, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039460.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039460.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056544.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056544.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJJ5", "url": "https://www.uniprot.org/uniprotkb/A0A287BJJ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627594", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627594", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 190, "end_pos": 192, "annotation": "n_glycosylation_sequon" 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"https://www.ncbi.nlm.nih.gov/protein/XP_005659232" }, "gene_names": [ { "name": "NHSL1", "type": "recommended", "evidence": [ { "id": "A0A287BJM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BJM9" } ] }, { "name": "NHSL1", "type": "synonym", "evidence": [ { "id": "XP_005659232", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659232" } ] } ], "protein_names": [ { "name": "NHS like 1", "type": "synonym", "evidence": [ { "id": "A0A287BJM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BJM9/entry#names_and_taxonomy" } ] }, { "name": "NHS-like protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005659232", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659232" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": 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"Protein" ] } ], "sequence": { "sequence": 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"url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 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9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BJT4", "url": "https://www.uniprot.org/uniprotkb/A0A287BJT4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TLDC2", "url": "https://www.uniprot.org/uniprotkb/A0A287BJT4", "locus": { "chromosome": "17", "start_pos": 40120399, "end_pos": 40109210, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031690", "url": "https://www.ensembl.org/id/ENSSSCG00000031690" } ] } } ], "crossref": [ { "id": "ENSSSCG00000031690", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031690", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100158114", "url": "https://www.ncbi.nlm.nih.gov/gene/100158114", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006571", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006571", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100158114", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158114", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HYGLWCD", "url": "https://omabrowser.org/oma/group/HYGLWCD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BJT4", "url": "https://www.orthodb.org/?gene=A0A287BJT4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23354", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23354", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23354:SF65", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23354:SF65", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07534", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07534", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001928123", "url": 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"MKGLRWRYTRLPSQAENALSEEEGEEEEDEGDTVPAPAPAPEDPVEPQLAEASQVLGASEIRQLSLHLPPRVTGHSWSLAFCTSRNGFSLRSLYRQMEGHNGPVLLVLRDHDGQMFGAFSSSAIRLSKNFYGTGETFLFTFSPQLKVFKWTGSNSFFVKGDLDLLMIGCGSGHFGLWLDGDLYHGGSHPCATFNNEVLARQEQFCIKELEAWVLS", "length": 215, "header": "tr|A0A287BJT4-1|A0A287BJT4_PIG Isoform 1 of TBC/LysM-associated domain containing 2 OS=Sus scrofa OX=9823 GN=TLDC2 PE=4 SV=1 CANONICAL=A0A287BJT4-1" }, "locus": { "chromosome": "17", "start_pos": 40117070, "end_pos": 40109286, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051399.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051399.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056787.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056787.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJT4", "url": "https://www.uniprot.org/uniprotkb/A0A287BJT4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100158114", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158114", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LX94-1", "protein_name": "TLD domain-containing protein 2 isoform X1", "gene_name": "Tldc2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKGRRWRYTQLPTQVEDTLSGEEGEKEEEEEEEEAVPVPQEPVEPQLTEASQVLGVSEIKQLSLHLPARVTGHPWSLVFCTSRDGFSLRRLYRQMEGHSGPTLLLLKDQDGQMFGAFSSSAIRLSKGFYGTGETFLFSFSPQLKVFKWTGSNSFFVKGDLDSLMMGSGSGQFGLWLDGDLYHGGSYPCATFNNEVLARQEQFCIEELEAWALS", "length": 213 }, "evidence": [ { "id": "A0A287BJT4", "url": "https://omabrowser.org/oma/group/A0A287BJT4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0PJX2-1", "protein_name": "TLD domain-containing protein 2", "gene_name": "TLDC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRGLRWRYTRLPSQVEDTLSGEEGNEEEEEEEAAPDPAAAPEDPTVPQLTEASQVLSASEIRQLSFHFPPRVTGHPWSLVFCTSRDGFSLQSLYRRMEGCSGPVLLVLRDQDGQIFGAFSSSAIRLSKGFYGTGETFLFSFSPQLKVFKWTGSNSFFVKGDLDSLMMGSGSGRFGLWLDGDLFRGGSSPCPTFNNEVLARQEQFCIQELEAWLLS", "length": 215 }, "evidence": [ { "id": "A0A287BJT4", "url": "https://omabrowser.org/oma/group/A0A287BJT4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A2ACG1-1", "protein_name": "TLD domain-containing protein 2", "gene_name": "Tldc2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDTLSGEEGEEEEEEEPAPAPAPQDPVEPQLTEASQVLGASEIKQLSLHLPPRVTGHPWSLVFCTSRDGFSLRRLYRQMEGHSGPVLLLLRDQDGQMFGAFSSSAIRLSKGFYGTGETFLFSFSPQLKVFKWTGHNSFFVKGDLDSLMMGSGSGQFGLWLDGDLYHGGSYPCATFNNEVLARREQFCIKELEAWVLS", "length": 198 }, "evidence": [ { "id": "A0A287BJT4", "url": "https://omabrowser.org/oma/group/A0A287BJT4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3ZQ38-1", "protein_name": "TBC/LysM-associated domain containing 2", "gene_name": "Tldc2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKGRQWRYTQLPTEMEDTLSGEEGEEEEEEEPAPAPQDPVEPQLTEASQVLGASEIKQLSLHLPPRVTGHPWNLIFCTSRDGFSLQRLYRQMEGHSGPVLLLLRDQDGQMFGAFSSSALRLSKGFYGTGETFLFSFSPQLKVFKWTGHNSFFVKGDLDSLMMGSGSGQFGLWLDGDLYHGGSYPCATFNNEVLARREQFCIRELEAWALS", "length": 210 }, "evidence": [ { "id": "A0A287BJT4", "url": "https://omabrowser.org/oma/group/A0A287BJT4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q0IID2-1", "protein_name": "TLD domain-containing protein 2", "gene_name": "TLDC2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKSLRWRYTRLPSQVEDALSGEEDKEEEEEKEEETTPAPTPVPEHPMVPQLAGASQVLGASEMSQLSLHLPPRVTGYSWSLAFCTSRDGFSLQSLYRQMEGHSGPVLLVLRDQDGQMFGAFSSSALRLSKGFYGTGETFLFSFSPQLKVFKWTGSNSFFVKGDLDSLMMGCGSGRFGLWLDGDLYRGGSHPCATFNNEVLARQEQFCISELEAWVLS", "length": 217 }, "evidence": [ { "id": "A0A287BJT4", "url": "https://omabrowser.org/oma/group/A0A287BJT4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { 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"IPR043541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46129", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46129", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46129:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46129:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020919539", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919539", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BJW0", "url": "https://www.uniprot.org/uniprotkb/A0A287BJW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJW0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF52", "url": "https://www.uniprot.org/uniprotkb/F1SF52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF52-1", "url": "https://www.uniprot.org/uniprotkb/F1SF52-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAIEGGERTCGVHELICIRKVSPEAVGFLSAVGVFIILMLLLFLYINKKFCFENVGGFPDLGSGYGPRKNSQDKIYNSYMDRDEHGSSSESEDEALGKYHEALSRTHHSMLPLADSRQKNCPWETRQKYSPLSAEYDGYSSEASVDEGNCIQRMRRTPPLDELQPPPYQDDSGSPHLSCTPSELGDSKCEFSHCSNSPRCSYNKCPSEGSAGHEIESFRNKGYEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAKYGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSSCQSLDHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPHTYVKLTLLNSMGQEMSKCKTSIRRGQPNPVYKETFVFQVALFQLSDVTLILSVYNKRSMKRKEMIGWISLGLNSSGEEELNHWTEMKESKGQQVCRWHALLES", "length": 555, "header": "tr|A0A287BJW0-1|A0A287BJW0_PIG Isoform 1 of Synaptotagmin 14 OS=Sus scrofa OX=9823 GN=SYT14 PE=3 SV=3 CANONICAL=A0A287BJW0-1" }, "isoforms": [ { "isoform_ac": "A0A287BJW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJW0/entry#A0A287BJW0-1", "sequence": { "sequence": "MAIEGGERTCGVHELICIRKVSPEAVGFLSAVGVFIILMLLLFLYINKKFCFENVGGFPDLGSGYGPRKNSQDKIYNSYMDRDEHGSSSESEDEALGKYHEALSRTHHSMLPLADSRQKNCPWETRQKYSPLSAEYDGYSSEASVDEGNCIQRMRRTPPLDELQPPPYQDDSGSPHLSCTPSELGDSKCEFSHCSNSPRCSYNKCPSEGSAGHEIESFRNKGYEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAKYGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSSCQSLDHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPHTYVKLTLLNSMGQEMSKCKTSIRRGQPNPVYKETFVFQVALFQLSDVTLILSVYNKRSMKRKEMIGWISLGLNSSGEEELNHWTEMKESKGQQVCRWHALLES", "length": 555, "header": "tr|A0A287BJW0-1|A0A287BJW0_PIG Isoform 1 of Synaptotagmin 14 OS=Sus scrofa OX=9823 GN=SYT14 PE=3 SV=3 CANONICAL=A0A287BJW0-1" }, "locus": { "chromosome": "9", "start_pos": 133040787, "end_pos": 132821266, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046885.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046885.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056674.3", "url": "https://www.ensembl.org/id/ENSSSCP00000056674.3" } ] } }, { "isoform_ac": "F1SF52-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJW0/entry#F1SF52-1", "sequence": { "sequence": "MAFFRNFQQNLPSVSSLVDTISNAVEDLTAAVGDVGCALTGSVAEQVTGMISGFRPEEGGSAAAGAVDASRQGSATLPEVYENTNCQKAQLNLEHRADQINCYNTSFSQKQDHGMNEGVFKHSNNRQQMVSKYQGTHDASDSPLKGGMSGIEPSRGAASACQELESTDRCKKNRLGISSHGKHGLKEVRYQETKNCLKKAEKHTSSKGSRENECSGNECSPKEILESTGHAQKAIRKEDIHPAPSANSKAKLRGKVKEQINPTKYCRVKGDIKANKNEAISAKKGTVKSKDEKYSKLMPEKDNSYMDRDEHGSSSESEDEALGKYHEALSRTHHSMLPLADSRQKNCPWETRQKYSPLSAEYDGYSSEASVDEGNCIQRMRRTPPLDELQPPPYQDDSGSPHLSCTPSELGDSKCEFSHCSNSPRCSYNKCPSEGSAGHEIESFRNKGYEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAKYGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSSCQSLDHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPHGLFCCLKHLIGGQVYIIRDTYVKLTLLNSMGQEMSKCKTSIRRGQPNPVYKETFVFQVALFQLSDVTLILSVYNKRSMKRKEMIGWISLGLNSSGEEELNHWTEMKESKGQQVCRWHALLES", "length": 800, "header": "tr|F1SF52-1|A0A287BJW0_PIG Computationally mapped isoform of Synaptotagmin 14 OS=Sus scrofa OX=9823 GN=SYT14 PE=3 SV=5 CANONICAL=A0A287BJW0-1" }, "locus": { "chromosome": "9", "start_pos": 132963889, "end_pos": 132821266, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017004.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017004.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016550.5", "url": "https://www.ensembl.org/id/ENSSSCP00000016550.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen 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"categories": [ "Protein Classification" ] }, { "id": "PTHR46435:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46435:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00632", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00632", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BJY5", "url": "https://www.uniprot.org/uniprotkb/A0A287BJY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJM5", "url": "https://www.uniprot.org/uniprotkb/F1RJM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJM5-1", "url": "https://www.uniprot.org/uniprotkb/F1RJM5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LKD5", "url": "https://www.uniprot.org/uniprotkb/I3LKD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LKD5-1", "url": "https://www.uniprot.org/uniprotkb/I3LKD5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSSAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEILTFETKNPTELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGDEETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGCHIPHKQKENAAAALVALACARGSLKTFVHTVHLLQKQTDLGSLPVADVLYRLLLLEGGPGSPSCLLGGKHIVSWGYEDMLPAPDSNTGSSSESKDADLGRCLTADGLYLYTTNSVGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAFGNGSLLHRPVSFDNKPHSLFQVIDQNTLQVCQMVPMPANHLPVGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELVVENGVFVANPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPIYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFTSRADLIDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKEEAITTNEVINQLLHHVGAMCIHQLNLLATNPNLPITSVLGKQHPIEAHHLSSICDIMEKAMVNGDTCIIRCILVVFQVVFKFFFSPQTERNRDIIRRSGLLLWQLLMAPRDQICPEIQKEVCLAISSGLNILYPGETEINNLLKLVLTEGERNSGLSQLRDVILTNLAEQLQNNRFGSEEDDHYRLNDELLHYILKIVVRESCILITKCQTVSKDDFQKLLSTVPAASSCLRYLMAVQNHLLSNTILIKPDENDDSDNSLQGETLKVQELKVSILALATQILTGCDEVLEMLQQVTTALINSDIPDREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLTMADALMPQLVQLVLYTSQTALLLKTQCPVFAEVGCSPCGASDQKGRLFPDERMLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGARCLYLRFDSRCSSQYDYDKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKVEGDTVTFSFEMRSGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFLVDLALGLSVLACSMLRILYNGPEITKEEEACQELLRSKLLQRCQWQVEANGVISPALTPSPSPLPLTIEEDREFTYPSDVLVPPVGNYFDLPRIRLPPGIMIKLREISGRARPQFRPSIKEVIQPDVMEEMVVSCVIKHLNLVDALQSLINFQYQEEHAEEYDLLCKIMGETFKKLNAMERQLQSVAELEQKWQSEVDDAIQGKLENNMPFFYDYHFNENKMKELELLCSMKEVSFDGNDLENMVLSLREKFLQEVNSLIQKPSHPLAKTKTLVKSLMNRAELLLHVTIAAQSGLTRSISGTPAETPACKSASETKVISHAVRQPVFLRSMSAPSDLEMIGNEDLEFTRANQRRRHVTSHRSSSFTLLQSLAIEDSRDKPTYSVLLGQLFAFIGTNPDQAVSSSSFLLAAQTRWRRGNTRKQALVHMRELLTAAVRVGGVTHLVGPVTMVLQGGPRIEELTCGGMVEQVQEAFGETMTSVVSLCARYPIACANSIGLLCTIPYTRSEEKCLVRSGLVQLMDRLCSLSSQTESSSSEKQTKKQKVATMAWAAFQVLANRCVEWEKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLNDLSRSHIGKAILSQPACVSKLLSLLLDQRPSPKLVLIILQLCRAALPLMSVEDCGNVELPPWSYSVPSLNSEQEDPSDPASKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNSLKGDKDPGEESEAVDGKLSIFIHKREDQSSHEVLQPLLSSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEAAAALRKATKWAQSGLIVSVGPPVESISPETVSGLSTGDKKKTAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPESNAAQIWTTTAEKVLSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGISGSIGVVASINEQEGIATVRFPPIDCRKTSQASDTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIHTSLPATGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEVQCERLRMLYRDCARPPPPPLQADRRQPKEITWSPSRVFPPVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWEIEIVSYGDTDDDTGPIVSFGFATEAEKRDGAWTNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERTEGTPPPPGQPAKGRVYFTYCGQRLSPYLEDVSGGMWPVVHIQKKNTKTRANFGSRPFAYAEGQAHRNAADLCTDLAEEISANFEALPFAMASDSDNDAGTSIASDPGTHGPPCRIAAVATAQQQYDSDTSCHYKVELSYENFITSGPDPHPPPIADDESDDDDDDDIPQEDHYALLVKAWETKVFPTIRRRFRNEAERKSGLDQIKGALQLGMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGLTVVTRSPDSNNVASSTVGTALPKFAIRGMLKTFGLHGVVLDVDSVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTNLQIHRELLRCEAALARLYCRMALLNIFAPKLPHLFTRLFHIPAIRDITLEHLQLLSNQLLAPPLPDGTISSSSILLAQSLQHCIHSQNCSATDLFYQGSSQTVREWLNVAITRTLHQGEESLLELTKQICSFLQTAPEQFPSEEFPISESKVNMDVNFPGAAFVVVSCKESQSGFRKDSSLYKAPWARVLVYGLGHKVKRNGQLNLIEAVCYPRDASPANTGLTPPPTTNQYPSVILSTDKVHIKLGVSPPPGAVLVLHSLPLEFPLAMAFAEQLLSWRSEDGEGRAEDEPDTIPTSVLLQVVELLGNFLWTTDMAACVKELVFHLLAELLRTVHGLEQRKHPAGLSSSIALQLNPCLAMLMALQSELHKLYDEETQSWVSGSACGSSGAAAATDQGRFSTYFHALMEGCLAVAEVTLPTNMSVTTSGVTSATAPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSGKRQSSRSVESDPAVLSIGGSKPEDMLWFHRALTLLIILRHLTRKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEGIVRGAIRKACNAHGGVFKDEIYIPLQDEDPKKPKDKAEGGDGKAEAEKTLGFPNTDSLEVSTSSSLTPAMSISASASTSQASICSSQGISQTVSDLSAEPLPSGLELPIPAGLLEPHVVSSQESLDISLCSTGSLGSLGSLGEPLDNAETASVLDMGSMYTVTSLDNQPLAARPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPGLEDYFNDKSIKGEKLVPGAREVLTEIFKSCAHSEQMLSLTPAKPIKVSDIYLSKEQINSQTPGNLLHLFFTNVRPPKKVLEDQLTQILRKYGVPKPKFDKSKYSKAGKEQHPGKVVSTKRPITKPPAKDKAVLNSVSRTALSEKKPTVKPKSPEKSKPDEKDPEKSPTKKQEVPEEKYLTLEGFHKFVIDRAKQDIRSVWRAILSCGYDLHFERCACIDVRHAHKASRKWTLEMDVALVQYINRLCRHLAITPARLHPHEVYLDPADAADPRVACLLNMPIESLRLRFALLQSLNTTLETFFLPLVELRQTPMYTHSIAALLQEAKGLIFYDTKVTVMNRVLNATVQRTADHAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGDPTYAFNIRFTGEEVHGTSGSFRHFLWQVCKELQSSSLSLLLLCPSSAVNKNKVRHQAPAAAASVPPAPPAVSSLGAVARQVHGLVSLVLHQPSWSGQGLPLQWFPPACHGSREPGTHVPGASRGTGGSAHACLHFQGKYILTPSPITYGEEQLLHFLGQLLGIAIRADVPLPLDLLPSFWKTLVGEPLDPDQDLQEADILTYNYVKKFESINDEIELEALCAEIASQHLATESPDGPNKPCCRFTYLTMTGEEVELCSRGRHIPVAWENKDIYAATIRSLRLRELQNVECVTAVRAGLGSIIPLQLLTTLSPLEMELRTCGLPYINLEFLKAHTMYQVGLMETDQHIEFFWGALEMFAQEELCKFIKFACNQERIPFTCPCKDGGPDTAHVPPYPMKIAPPDGTAGSPDSRYIRVETCMFMIKLPQYSSLEIMLEKLRCAIHYREDPLSG", "length": 4502, "header": "tr|A0A287BJY5-1|A0A287BJY5_PIG Isoform 1 of HECT domain E3 ubiquitin protein ligase 4 OS=Sus scrofa OX=9823 GN=HECTD4 PE=1 SV=2 CANONICAL=A0A287BJY5-1" }, "isoforms": [ { "isoform_ac": "A0A287BJY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJY5/entry#A0A287BJY5-1", "sequence": { "sequence": "MGSSAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEILTFETKNPTELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGDEETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGCHIPHKQKENAAAALVALACARGSLKTFVHTVHLLQKQTDLGSLPVADVLYRLLLLEGGPGSPSCLLGGKHIVSWGYEDMLPAPDSNTGSSSESKDADLGRCLTADGLYLYTTNSVGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAFGNGSLLHRPVSFDNKPHSLFQVIDQNTLQVCQMVPMPANHLPVGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELVVENGVFVANPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPIYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFTSRADLIDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKEEAITTNEVINQLLHHVGAMCIHQLNLLATNPNLPITSVLGKQHPIEAHHLSSICDIMEKAMVNGDTCIIRCILVVFQVVFKFFFSPQTERNRDIIRRSGLLLWQLLMAPRDQICPEIQKEVCLAISSGLNILYPGETEINNLLKLVLTEGERNSGLSQLRDVILTNLAEQLQNNRFGSEEDDHYRLNDELLHYILKIVVRESCILITKCQTVSKDDFQKLLSTVPAASSCLRYLMAVQNHLLSNTILIKPDENDDSDNSLQGETLKVQELKVSILALATQILTGCDEVLEMLQQVTTALINSDIPDREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLTMADALMPQLVQLVLYTSQTALLLKTQCPVFAEVGCSPCGASDQKGRLFPDERMLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGARCLYLRFDSRCSSQYDYDKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKVEGDTVTFSFEMRSGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFLVDLALGLSVLACSMLRILYNGPEITKEEEACQELLRSKLLQRCQWQVEANGVISPALTPSPSPLPLTIEEDREFTYPSDVLVPPVGNYFDLPRIRLPPGIMIKLREISGRARPQFRPSIKEVIQPDVMEEMVVSCVIKHLNLVDALQSLINFQYQEEHAEEYDLLCKIMGETFKKLNAMERQLQSVAELEQKWQSEVDDAIQGKLENNMPFFYDYHFNENKMKELELLCSMKEVSFDGNDLENMVLSLREKFLQEVNSLIQKPSHPLAKTKTLVKSLMNRAELLLHVTIAAQSGLTRSISGTPAETPACKSASETKVISHAVRQPVFLRSMSAPSDLEMIGNEDLEFTRANQRRRHVTSHRSSSFTLLQSLAIEDSRDKPTYSVLLGQLFAFIGTNPDQAVSSSSFLLAAQTRWRRGNTRKQALVHMRELLTAAVRVGGVTHLVGPVTMVLQGGPRIEELTCGGMVEQVQEAFGETMTSVVSLCARYPIACANSIGLLCTIPYTRSEEKCLVRSGLVQLMDRLCSLSSQTESSSSEKQTKKQKVATMAWAAFQVLANRCVEWEKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLNDLSRSHIGKAILSQPACVSKLLSLLLDQRPSPKLVLIILQLCRAALPLMSVEDCGNVELPPWSYSVPSLNSEQEDPSDPASKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNSLKGDKDPGEESEAVDGKLSIFIHKREDQSSHEVLQPLLSSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEAAAALRKATKWAQSGLIVSVGPPVESISPETVSGLSTGDKKKTAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPESNAAQIWTTTAEKVLSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGISGSIGVVASINEQEGIATVRFPPIDCRKTSQASDTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIHTSLPATGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEVQCERLRMLYRDCARPPPPPLQADRRQPKEITWSPSRVFPPVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWEIEIVSYGDTDDDTGPIVSFGFATEAEKRDGAWTNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERTEGTPPPPGQPAKGRVYFTYCGQRLSPYLEDVSGGMWPVVHIQKKNTKTRANFGSRPFAYAEGQAHRNAADLCTDLAEEISANFEALPFAMASDSDNDAGTSIASDPGTHGPPCRIAAVATAQQQYDSDTSCHYKVELSYENFITSGPDPHPPPIADDESDDDDDDDIPQEDHYALLVKAWETKVFPTIRRRFRNEAERKSGLDQIKGALQLGMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGLTVVTRSPDSNNVASSTVGTALPKFAIRGMLKTFGLHGVVLDVDSVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTNLQIHRELLRCEAALARLYCRMALLNIFAPKLPHLFTRLFHIPAIRDITLEHLQLLSNQLLAPPLPDGTISSSSILLAQSLQHCIHSQNCSATDLFYQGSSQTVREWLNVAITRTLHQGEESLLELTKQICSFLQTAPEQFPSEEFPISESKVNMDVNFPGAAFVVVSCKESQSGFRKDSSLYKAPWARVLVYGLGHKVKRNGQLNLIEAVCYPRDASPANTGLTPPPTTNQYPSVILSTDKVHIKLGVSPPPGAVLVLHSLPLEFPLAMAFAEQLLSWRSEDGEGRAEDEPDTIPTSVLLQVVELLGNFLWTTDMAACVKELVFHLLAELLRTVHGLEQRKHPAGLSSSIALQLNPCLAMLMALQSELHKLYDEETQSWVSGSACGSSGAAAATDQGRFSTYFHALMEGCLAVAEVTLPTNMSVTTSGVTSATAPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSGKRQSSRSVESDPAVLSIGGSKPEDMLWFHRALTLLIILRHLTRKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEGIVRGAIRKACNAHGGVFKDEIYIPLQDEDPKKPKDKAEGGDGKAEAEKTLGFPNTDSLEVSTSSSLTPAMSISASASTSQASICSSQGISQTVSDLSAEPLPSGLELPIPAGLLEPHVVSSQESLDISLCSTGSLGSLGSLGEPLDNAETASVLDMGSMYTVTSLDNQPLAARPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPGLEDYFNDKSIKGEKLVPGAREVLTEIFKSCAHSEQMLSLTPAKPIKVSDIYLSKEQINSQTPGNLLHLFFTNVRPPKKVLEDQLTQILRKYGVPKPKFDKSKYSKAGKEQHPGKVVSTKRPITKPPAKDKAVLNSVSRTALSEKKPTVKPKSPEKSKPDEKDPEKSPTKKQEVPEEKYLTLEGFHKFVIDRAKQDIRSVWRAILSCGYDLHFERCACIDVRHAHKASRKWTLEMDVALVQYINRLCRHLAITPARLHPHEVYLDPADAADPRVACLLNMPIESLRLRFALLQSLNTTLETFFLPLVELRQTPMYTHSIAALLQEAKGLIFYDTKVTVMNRVLNATVQRTADHAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGDPTYAFNIRFTGEEVHGTSGSFRHFLWQVCKELQSSSLSLLLLCPSSAVNKNKVRHQAPAAAASVPPAPPAVSSLGAVARQVHGLVSLVLHQPSWSGQGLPLQWFPPACHGSREPGTHVPGASRGTGGSAHACLHFQGKYILTPSPITYGEEQLLHFLGQLLGIAIRADVPLPLDLLPSFWKTLVGEPLDPDQDLQEADILTYNYVKKFESINDEIELEALCAEIASQHLATESPDGPNKPCCRFTYLTMTGEEVELCSRGRHIPVAWENKDIYAATIRSLRLRELQNVECVTAVRAGLGSIIPLQLLTTLSPLEMELRTCGLPYINLEFLKAHTMYQVGLMETDQHIEFFWGALEMFAQEELCKFIKFACNQERIPFTCPCKDGGPDTAHVPPYPMKIAPPDGTAGSPDSRYIRVETCMFMIKLPQYSSLEIMLEKLRCAIHYREDPLSG", "length": 4502, "header": "tr|A0A287BJY5-1|A0A287BJY5_PIG Isoform 1 of HECT domain E3 ubiquitin protein ligase 4 OS=Sus scrofa OX=9823 GN=HECTD4 PE=1 SV=2 CANONICAL=A0A287BJY5-1" }, "locus": { "chromosome": "14", "start_pos": 39535689, "end_pos": 39326991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048879.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048879.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056908.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056908.2" } ] } }, { "isoform_ac": "F1RJM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJY5/entry#F1RJM5-1", "sequence": { "sequence": "MGSSAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEILTFETKNPTELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGDEETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGCHIPHKQKENAAAALVALACARGSLKTFVHTVHLLQKQTDLGSLPVADVLYRLLLLEGGPGSPSCLLGGKHIVSWGYEDMLPAPDSNTGSSSESKDADLGRCLTADGLYLYTTNSVGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAFGNGSLLHRPVSFDNKPHSLFQVIDQNTLQVCQMVPMPANHLPVGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELVVENGVFVANPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPIYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFTSRADLIDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKEEAITTNEVINQLLHHVGAMCIHQLNLLATNPNLPITSVLGKQHPIEAHHLSSICDIMEKAMVNGDTCIIRCILVVFQVVFKFFFSPQTERNRDIIRRSGLLLWQLLMAPRDQICPEIQKEVCLAISSGLNILYPGETEINNLLKLVLTEGERNSGLSQLRDVILTNLAEQLQNNRFGSEEDDHYRLNDELLHYILKIVVRESCILITKCQTVSKDDFQKLLSTVPELKVSILALATQILTGCDEVLEMLQQVTTALINSDIPDREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLTMADALMPQLVQLVLYTSQTALLLKTQCPVFAEVGCSPCGASDQKGRLFPDERMLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGARCLYLRFDSRCSSQYDYDKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKVEGDTVTFSFEMRSGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFLVDLALGLSVLACSMLRILYNGPEITKEEEACQELLRSKLLQRCQWQVEANGVISPALTPSPSPLPLTIEEDREFTYPSDVLVPPVGNYFDLPRIRLPPGIMIKLREISGRARPQFRPSIKEVIQPDVMEEMVVSCVIKHLNLVDALQSLINFQYQEEHAEEYDLLCKIMGETFKKLNAMERQLQSVAELEQKWQSEVDDAIQGKLENNMPFFYDYHFNENKMKELELLCSMKEVSFDGNDLENMVLSLREKFLQEVNSLIQKPSHPLAKTKTLVKSLMNRAELLLHVTIAAQSGLTRSISGTPAETPACKSASETKVISHAVRQPVFLRSMSAPSDLEMIGNEDLEFTRANQRRRHVTSHRSSSFTLLQSLAIEDSRDKPTYSVLLGQLFAFIGTNPDQAVSSSSFLLAAQTRWRRGNTRKQALVHMRELLTAAVRVGGVTHLVGPVTMVLQGGPRIEELTCGGMVEQVQEAFGETMTSVVSLCARYPIACANSIGLLCTIPYTRSEEKCLVRSGLVQLMDRLCSLSSQTESSSSEKQTKKQKVATMAWAAFQVLANRCVEWEKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLNDLSRSHIGKAILSQPACVSKLLSLLLDQRPSPKLVLIILQLCRAALPLMSVEDCGNVELPPWSYSVPSLNSEQEDPSDPASKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNSLKGDKDPGEESEAVDGKLSIFIHKREDQSSHEVLQPLLSSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEAAAALRKATKWAQSGLIVSVGPPVESISPETVSGLSTGDKKKTAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPESNAAQIWTTTAEKVLSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGISGSIGVVASINEQEGIATVRFPPIDCRKTSQASDTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIHTSLPATGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEVQCERLRMLYRDCARPPPPPLQADRRQPKEITWSPSRVFPPVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWEIEIVSYGDTDDDTGPIVSFGFATEAEKRDGAWTNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERTEGTPPPPGQPAKGRVYFTYCGQRLSPYLEDVSGGMWPVVHIQKKNTKTRANFGSRPFAYAEGQAHRNAADLCTDLAEEISANFEALPFAMASDSDNDAGTSIASDPGTHGPPCRIAAVATAQQQYDSDTSCHYKVELSYENFITSGPDPHPPPIADDESDDDDDDDIPQEDHYALLVKAWETKVFPTIRRRFRNEAERKSGLDQIKGALQLGMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGLTVVTRSPDSNNVASSTVGTALPKFAIRGMLKTFGLHGVVLDVDSVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTNLQIHRELLRCEAALARLYCRMALLNIFAPKLPHLFTRLFHIPAIRDITLEHLQLLSNQLLAPPLPDGTISSSSILLAQSLQHCIHSQNCSATDLFYQGSSQTVREWLNVAITRTLHQGEESLLELTKQICSFLQTAPEQFPSEEFPISESKVNMDVNFPGAAFVVVSCKESQSGFRKDSSLYKAPWARVLVYGLGHKVKRNGQLNLIEAVCYPRDASPANTGLTPPPTTNQYPSVILSTDKVHIKLGVSPPPGAVLVLHSLPLEFPLAMAFAEQLLSWRSEDGEGRAEDEPDTIPTSVLLQVVELLGNFLWTTDMAACVKELVFHLLAELLRTVHGLEQRKHPAGLSSSIALQLNPCLAMLMALQSELHKLYDEETQSWVSGSACGSSGAAAATDQGRFSTYFHALMEGCLAVAEVTLPTNMSVTTSGVTSATAPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSGKRQSSRSVESDPAVLSIGGSKPEDMLWFHRALTLLIILRHLTRKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEGIVRGAIRKACNAHGGVFKDEIYIPLQDEDPKKPKDKAEGGDGKAEAEKTLGFPNTDSLEVSTSSSLTPAMSISASASTSQASICSSQGISQTVSDLSAEPLPSGLELPIPAGLLEPHVVSSQESLDISLCSTGSLGSLGSLGEPLDNAETASVLDMGSMYTVTSLDNQPLAARPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPGLEDYFNDKSIKGEKLVPGAREVLTEIFKSCAHSEQMLSLTPAKPIKVSDIYLSKEQINSQTPGNLLHLFFTNVRPPKKVLEDQLTQILRKYGVPKPKFDKSKYSKAGKEQHPGKVVSTKRPITKPPAKDKAVLNSVSRTALSEKKPTVKPKSPEKSKPDEKDPEKSPTKKQEVPEEKYLTLEGFHKFVIDRAKQDIRSVWRAILSCGYDLHFERCACIDVRHAHKASRKWTLEMDVALVQYINRLCRHLAITPARLHPHEVYLDPADAADPRVACLLNMPIESLRLRFALLQSLNTTLETFFLPLVELRQTPMYTHSIAALLQEAKGLIFYDTKVTVMNRVLNATVQRTADHAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGDPTYAFNIRFTGEEVHGTSGSFRHFLWQVCKELQSSSLSLLLLCPSSAVNKNKGKYILTPSPITYGEEQLLHFLGQLLGIAIRADVPLPLDLLPSFWKTLVGEPLDPDQDLQEADILTYNYVKKFESINDEIELEALCAEIASQHLATESPDGPNKPCCRFTYLTMTGEEVELCSRGRHIPVAWENKDIYAATIRSLRLRELQNVECVTAVRAGLGSIIPLQLLTTLSPLEMELRTCGLPYINLEFLKAHTMYQVGLMETDQHIEFFWGALEMFAQEELCKFIKFACNQERIPFTCPCKDGGPDTAHVPPYPMKIAPPDGTAGSPDSRYIRVETCMFMIKLPQYSSLEIMLEKLRCAIHYREDPLSG", "length": 4375, "header": "tr|F1RJM5-1|A0A287BJY5_PIG Computationally mapped isoform of HECT domain E3 ubiquitin protein ligase 4 OS=Sus scrofa OX=9823 GN=HECTD4 PE=1 SV=4 CANONICAL=A0A287BJY5-1" }, "locus": { "chromosome": "14", "start_pos": 39535689, "end_pos": 39326991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010835.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010835.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010552.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010552.4" } ] } }, { "isoform_ac": "I3LKD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJY5/entry#I3LKD5-1", "sequence": { "sequence": "MGSSAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEILTFETKNPTELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGDEETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGCHIPHKQKENAAAALVALACARGSLKTFVHTVHLLQKQTDLGSLPVADVLYRLLLLEGGPGSPSCLLGGKHIVSWGYEDMLPAPDSNTGSSSESKDADLGRCLTADGLYLYTTNSVGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAFGNGSLLHRPVSFDNKPHSLFQVIDQNTLQVCQMVPMPANHLPVGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELVVENGVFVANPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPIYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFTSRADLIDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKEEAITTNEVINQLLHHVGAMCIHQLNLLATNPNLPITSVLGKQHPIEAHHLSSICDIMEKAMVNGDTCIIRCILVVFQVVFKFFFSPQTERNRDIIRRSGLLLWQLLMAPRDQICPEIQKEVCLAISSGLNILYPGETEINNLLKLVLTEGERNSGLSQLRDVILTNLAEQLQNNRFGSEEDDHYRLNDELLHYILKIVVRESCILITKCQTVSKDDFQKLLSTVPAASSCLRYLMAVQNHLLSNTILIKPDENDDSDNSLQGETLKELKVSILALATQILTGCDEVLEMLQQVTTALINSDIPDREQRLKGLEQVTKATMLGHLLPVLLTSLMHPNLQTLTMADALMPQLVQLVLYTSQTALLLKTQCPVFAEVGCSPCGASDQKGRLFPDERMLEEKEEPGFLTGLKIPAPWAAGKTVETVHPVRDNYKFKETVHIPGARCLYLRFDSRCSSQYDYDKLVIYAGPNTNSRKVAEYGGNTLGYGSRSVLGTGWPKDLVKVEGDTVTFSFEMRSGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFLVDLALGLSVLACSMLRILYNGPEITKEEEACQELLRSKLLQRCQWQVEANGVISPALTPSPSPLPLTIEEDREFTYPSDVLVPPVGNYFDLPRIRLPPGIMIKLREISGRARPQFRPSIKEVIQPDVMEEMVVSCVIKHLNLVDALQSLINFQYQEEHAEEYDLLCKIMGETFKKLNAMERQLQSVAELEQKWQSEVDDAIQGKLENNMPFFYDYHFNENKMKELELLCSMKEVSFDGNDLENMVLSLREKFLQEVNSLIQKPSHPLAKTKTLVKSLMNRAELLLHVTIAAQSGLTRSISGTPAETPACKSASETKVISHAVRQPVFLRSMSAPSDLEMIGNEDLEFTRANQRRRHVTSHRSSSFTLLQSLAIEDSRDKPTYSVLLGQLFAFIGTNPDQAVSSSSFLLAAQTRWRRGNTRKQALVHMRELLTAAVRVGGVTHLVGPVTMVLQGGPRIEELTCGGMVEQVQEAFGETMTSVVSLCARYPIACANSIGLLCTIPYTRSEEKCLVRSGLVQLMDRLCSLSSQTESSSSEKQTKKQKVATMAWAAFQVLANRCVEWEKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLNDLSRSHIGKAILSQPACVSKLLSLLLDQRPSPKLVLIILQLCRAALPLMSVEDCGNVELPPWSYSVPSLNSEQEDPSDPASKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNSLKGDKDPGEESEAVDGKLSIFIHKREDQSSHEVLQPLLSSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEAAAALRKATKWAQSGLIVSVGPPVESISPETVSGLSTGDKKKTAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPESNAAQIWTTTAEKVLSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGISGSIGVVASINEQEGIATVRFPPIDCRKTSQASDTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIHTSLPATGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEVQCERLRMLYRDCARPPPPPLQADRRQPKEITWSPSRVFPPVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWEIEIVSYGDTDDDTGPIVSFGFATEAEKRDGAWTNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERTEGTPPPPGQPAKGRVYFTYCGQRLSPYLEDVSGGMWPVVHIQKKNTKTRANFGSRPFAYAEGQAHRNAADLCTDLAEEISANFEALPFAMASDSDNDAGTSIASDPGTHGPPCRIAAVATAQQQYDSDTSCHYKVELSYENFITSGPDPHPPPIADDESDDDDDDDIPQEDHYALLVKAWETKVFPTIRRRFRNEAERKSGLDQIKGALQLGMVDIARQTVEFLYEENGGIPRDLYLPTIEDIKDEANKFTIDKVRKGLTVVTRSPDSNNVASSTVGTALPKFAIRGMLKTFGLHGVVLDVDSVNELVQVETYLRSEGVLVRYWYPIDMLERPPAGYRRTATNGLVTLDNTNLQIHRELLRCEAALARLYCRMALLNIFAPKLPHLFTRLFHIPAIRDITLEHLQLLSNQLLAPPLPDGTISSSSILLAQSLQHCIHSQNCSATDLFYQGSSQTVREWLNVAITRTLHQGEESLLELTKQICSFLQTAPEQFPSEEFPISESKVNMDVNFPGAAFVVVSCKESQSGFRKDSSLYKAPWARVLVYGLGHKVKRNGQLNLIEAVCYPRDASPANTGLTPPPTTNQYPSVILSTDKVHIKLGNFLWTTDMAACVKELVFHLLAELLRTVHGLEQRKHPAGLSSSIALQLNPCLAMLMALQSELHKLYDEETQSWVSGSACGSSGAAAATDQGRFSTYFHALMEGCLAVAEVTLPTNMSVTTSGVTSATAPNLSDSSSSSSSSPGQTPQSPSLLSKRKKVKMKREKASSSGKRQSSRSVESDPAVLSIGGSKPEDMLWFHRALTLLIILRHLTRKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEGIVRGAIRKACNAHGGVFKDEIYIPLQDEDPKKPKDKAEGGDGKAEAEKTLGFPNTDSLEVSTSSSLTPAMSISASASTSQASICSSQGISQTVSDLSAEPLPSGLELPIPAGLLEPHVVSSQESLDISLCSTGSLGSLGSLGEPLDNAETASVLDMGSMYTVTSLDNQPLAARPIKGFAVVEIRSRAKIEKIRASLFNNNDLIGLSSLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPGLEDYFNDKSIKGEKLVPGAREVLTEIFKSCAHSEQMLSLTPAKPIKVSDIYLSKEQINSQTPGNLLHLFFTNVRPPKKVLEDQLTQILRKYGVPKPKFDKSKYSKAGKEQHPGKVVSTKRPITKPPAKDKAVLNSVSRTALSEKKPTVKPKSPEKSKPDEKDPEKSPTKKQEVPEEKYLTLEGFHKFVIDRAKQDIRSVWRAILSCGYDLHFERCACIDVRHAHKASRKWTLEMDVALVQYINRLCRHLAITPARLHPHEVYLDPADAADPRVACLLNMPIESLRLRFALLQSLNTTLETFFLPLVELRQTPMYTHSIAALLQEAKGLIFYDTKVTVMNRVLNATVQRTADHAAPEITLDPLEIVGGEIRASENSYFCQAARQLASVPSSQLCVKLASGGDPTYAFNIRFTGEEVHGTSGSFRHFLWQVCKELQSSSLSLLLLCPSSAVNKNKGKYILTPSPITYGEEQLLHFLGQLLGIAIRADVPLPLDLLPSFWKTLVGEPLDPDQDLQEADILTYNYVKKFESINDEIELEALCAEIASQHLATESPDGPNKPCCRFTYLTMTGEEVELCSRGRHIPVAWENKDIYAATIRSLRLRELQNVECVTAVRAGLGSIIPLQLLTTLSPLEMELRTCGLPYINLEFLKAHTMYQVGLMETDQHIEFFWGALEMFAQEELCKFIKFACNQERIPFTCPCKDGGPDTAHVPPYPMKIAPPDGTAGSPDSRYIRVETCMFMIKLPQYSSLEIMLEKLRCAIHYREDPLSG", "length": 4356, "header": "tr|I3LKD5-1|A0A287BJY5_PIG Computationally mapped isoform of HECT domain E3 ubiquitin protein ligase 4 OS=Sus scrofa OX=9823 GN=HECTD4 PE=1 SV=3 CANONICAL=A0A287BJY5-1" }, "locus": { "chromosome": "14", "start_pos": 39535689, "end_pos": 39326991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023139.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023139.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024549.3", "url": "https://www.ensembl.org/id/ENSSSCP00000024549.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1499, "start_aa": "Thr", "end_pos": 1499, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1499", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3903, "start_aa": "Thr", "end_pos": 3903, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3903", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LKD5", "url": "https://www.uniprot.org/uniprotkb/I3LKD5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "glucose homeostasis", "id": "GO:0042593", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042593", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJY5", "url": "https://www.uniprot.org/uniprotkb/A0A287BJY5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-protein transferase activity", "id": "GO:0004842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004842", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJY5", "url": "https://www.uniprot.org/uniprotkb/A0A287BJY5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 166, "end_pos": 168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2134, "end_pos": 2136, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2470, "end_pos": 2472, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2939, "end_pos": 2941, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3272, "end_pos": 3274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3287, "end_pos": 3289, "annotation": "n_glycosylation_sequon" }, { "start_pos": 361, "end_pos": 363, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3640, "end_pos": 3642, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3946, "end_pos": 3948, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3994, "end_pos": 3996, "annotation": "n_glycosylation_sequon" }, { "start_pos": 511, "end_pos": 513, "annotation": "n_glycosylation_sequon" }, { "start_pos": 571, "end_pos": 573, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BJY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BJY5" }, { "id": "PS50237", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50237" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HECT", "eco_id": "ECO_0000259", "start_pos": 4188, "end_pos": 4502, "start_aa": "Gln", "end_aa": "Gly", "glycosite_overlap": "" } ], 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"exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BK01-1", "uniprot_ac": "A0A287BK01", "uniprot_id": "A0A287BK01_PIG", "mass": { "chemical_mass": 33359.0, "monoisotopic_mass": 33359.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "MARVEL domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A287BK01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BK01/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BK01", "url": "https://www.uniprot.org/uniprotkb/A0A287BK01" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287BK01", "locus": {} } ], "crossref": [ { "id": "A0A287BK01", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BK01", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035306", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035306", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR17068", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17068", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17068:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17068:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01284", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01284", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BK01", "url": "https://www.uniprot.org/uniprotkb/A0A287BK01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BK01-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BK01-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN27", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN27" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q7Z398-1", "protein_name": "Zinc finger protein 550", "gene_name": "ZNF550", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287BKH0-1" }, "locus": { "chromosome": "AEMK02000408.1", "start_pos": 989869, "end_pos": 989244, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050046.2", "url": "https://www.ensembl.org/id/ENSSSCT00000050046.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056663.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056663.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKH0", "url": "https://www.uniprot.org/uniprotkb/A0A287BKH0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BKH0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 130, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BKH0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BKH0" } ], "lectin_list": [], "domain_list": [], 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BKJ2-1", "uniprot_ac": "A0A287BKJ2", "uniprot_id": "A0A287BKJ2_PIG", "mass": { "chemical_mass": 36740.0, "monoisotopic_mass": 36740.0 }, "refseq": { "ac": "XP_020933611", "name": "fibrinogen-like protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933611" }, "gene_names": [ { "name": "FGL1", "type": "recommended", "evidence": [ { "id": "A0A287BKJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2" } ] }, { "name": "FGL1", "type": "synonym", "evidence": [ { "id": "XP_020933611", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933611" } ] } ], "protein_names": [ { "name": "Fibrinogen-like protein 1", "type": "recommended", "evidence": [ { "id": "A0A287BKJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2/entry#names_and_taxonomy" } ] }, { "name": "fibrinogen-like protein 1", "type": "synonym", "evidence": [ { "id": "XP_020933611", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933611" } ] } ], "function": [ { "annotation": "Immune suppressive molecule that inhibits antigen-specific T-cell activation by acting as a ligand of LAG3. LAG3-binding initiates a signaling that inhibits the T-cell receptor (TCR) in the immunological synapse, preventing T-cell activation. Binds LAG3 independently from MHC class II (MHC-II). Secreted by, and promotes growth of, hepatocytes.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2#function" }, { "database": "UniProtKB", "id": "ARBA00094376", "url": "https://www.uniprot.org/uniprotkb/ARBA00094376#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FGL1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2", "locus": { "chromosome": "17", "start_pos": 5547126, "end_pos": 5576790, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035335", "url": "https://www.ensembl.org/id/ENSSSCG00000035335" } ] } } ], "crossref": [ { "id": "ENSSSCG00000035335", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035335", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00087", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00087", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516651", "url": "https://www.ncbi.nlm.nih.gov/gene/100516651", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014716", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014716", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020837", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020837", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036056", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036056", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037579", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037579", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516651", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516651", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ASHQGIK", "url": "https://omabrowser.org/oma/group/ASHQGIK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BKJ2", "url": "https://www.orthodb.org/?gene=A0A287BKJ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47221", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47221", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47221:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47221:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00147", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00147", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020933611", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933611", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BKJ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKMAKTFSFILLTTALVMVRESWALEEDCLREQARLRAQVHLLETRVKQQKVKILQLLQEKEIQFLDKGEENSVIDLGGKRQYADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSDGGGWTVIQRRSDGSENFNRNWNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYEGNCAKEDLSGWWFNRCHSANLNGLYHSGPYTAKTDNGIVWHTWHGWWYSLKSVVMKIRPNDFIPNIV", "length": 316, "header": "tr|A0A287BKJ2-1|A0A287BKJ2_PIG Isoform 1 of Fibrinogen-like protein 1 OS=Sus scrofa OX=9823 GN=FGL1 PE=4 SV=1 CANONICAL=A0A287BKJ2-1" }, "isoforms": [ { "isoform_ac": "A0A287BKJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2/entry#A0A287BKJ2-1", "sequence": { "sequence": "MGKMAKTFSFILLTTALVMVRESWALEEDCLREQARLRAQVHLLETRVKQQKVKILQLLQEKEIQFLDKGEENSVIDLGGKRQYADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSDGGGWTVIQRRSDGSENFNRNWNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYEGNCAKEDLSGWWFNRCHSANLNGLYHSGPYTAKTDNGIVWHTWHGWWYSLKSVVMKIRPNDFIPNIV", "length": 316, "header": "tr|A0A287BKJ2-1|A0A287BKJ2_PIG Isoform 1 of Fibrinogen-like protein 1 OS=Sus scrofa OX=9823 GN=FGL1 PE=4 SV=1 CANONICAL=A0A287BKJ2-1" }, "locus": { "chromosome": "17", "start_pos": 5566547, "end_pos": 5549645, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037614.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037614.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036591.3", "url": "https://www.ensembl.org/id/ENSSSCP00000036591.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516651", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516651", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BY61-1", "protein_name": "Fibrinogen-like protein 1", "gene_name": "FGL1A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKILIVIDFLLAASLTSATRSSDLQNCFQEQIQLQAQVRLLEHRVKQQQLKIIQLLEKKEIQYRDRGDENSVIDLGGKRQYSDCAEIYNDGHKKSGFYKMKPTQSPNEFLAFCDMSEGGGWTVFQRRSDGSQDFNRDWTDYEEGFGNFVLTNGEYWLGNKNLHYLTNQGNYTLRIDLSDFEGERRYAQYTRFGVADEEHSYQMSCGEYSGTAGDSLTGGFHPEVKWWADHCGMKFSTRDRDNDNYEGNCAEEEKAGWWFNRCHSANLNGLYYKGPYTAKTDNGVVWYTWHGWWYSLKSVVMKVRPAHFKPNIV", "length": 313 }, "evidence": [ { "id": "A0A287BKJ2", "url": "https://omabrowser.org/oma/group/A0A287BKJ2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3GZB4-1", "protein_name": "Fibrinogen-like protein 1", "gene_name": "Fgl1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGKIRSFVLVTIALIMSRESWALENVNCLREQERLRAQVHQLETRVKQQQAMIAQLMHEKEVQFLDKGPEDNFIDLGGKRQYADCSEIYNDGFKQSGFYKIKPLQSQASFSVYCDMSDGGGWTVIQRRSDGSENFSRGWNDYENGFGNFVRSNGEYWLGNKNLNLLTMQGDYTLKIDLTDFEKNSRFAQYKHFKVGEKKSFYELNIGEYSGTAGDSLSGTFHPEVQWWASHQRMKFSTWDRDNDNYNGNCAEEEQSGWWFNRCHSANLNGVYYQGPYTAETDNGVVWYTWHGWWYSLKSVVMKIRPNDFIPNII", "length": 314 }, "evidence": [ { "id": "A0A287BKJ2", "url": "https://omabrowser.org/oma/group/A0A287BKJ2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q08830-1", "protein_name": "Fibrinogen-like protein 1", "gene_name": "FGL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKVFSFILVTTALTMGREISALEDCAQEQMRLRAQVRLLETRVKQQQVKIKQLLQENEVQFLDKGDENTVIDLGSKRQYADCSEIFNDGYKLSGFYKIKPLQSPAEFSVYCDMSDGGGWTVIQRRSDGSENFNRGWKDYENGFGNFVQKHGEYWLGNKNLHFLTTQEDYTLKIDLADFEKNSRYAQYKNFKVGDEKNFYELNIGEYSGTAGDSLAGNFHPEVQWWASHQRMKFSTWDRDHDNYEGNCAEEDQSGWWFNRCHSANLNGVYYSGPYTAKTDNGIVWYTWHGWWYSLKSVVMKIRPNDFIPNVI", "length": 312 }, "evidence": [ { "id": "A0A287BKJ2", "url": "https://omabrowser.org/oma/group/A0A287BKJ2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3SZZ7-1", "protein_name": "Fibrinogen-like protein 1", "gene_name": "FGL1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAKMFSFILVTTALVMGRGSSALENCLQEQARLRAQVYLLETRVKQQQVKISQLLHEKQVQLLDKGEENSVIDLGGKRQYADCSEIFNDGYKQSGFYKIKPLQSPAEFSVYCDMSDGGGWTVIQRRSDGSENFNRDWSDYENGFGNFVQKNGEYWLGNRNLHLLTTQGDYTLKIDLADFEKNSRYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSLTGNFHPEVQWWASHQRMKFSTWDRDNDNYEGNCAKEDQSGWWFNRCHSANLNGFYHKGPYTAKTDNGIVWHTWHGWWYSLKSVVMKIRPNDFIPNIV", "length": 312 }, "evidence": [ { "id": "A0A287BKJ2", "url": "https://omabrowser.org/oma/group/A0A287BKJ2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5M8C6-1", "protein_name": "Fibrinogen-like protein 1", "gene_name": "Fgl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIRSFVLITVALILGKESWVLGDENCLQEQVRLRAQVRQLETRVKQQQVVIAQLLHEKEVQFLDRGQEDSFIDLGGKRHYADCSEIYNDGFKHSGFYKIKPLQSLAEFSVYCDMSDGGGWTVIQRRSDGSENFNRGWNDYENGFGNFVQSNGEYWLGNKNINLLTMQGDYTLKIDLTDFEKNSRFAQYEKFKVGDEKSFYELNIGEYSGTAGDSLSGTFHPEVQWWASHQTMKFSTRDRDNDNYNGNCAEEEQSGWWFNRCHSANLNGVYYQGPYRAETDNGVVWYTWRGWWYSLKSVVMKIRPSDFIPNIV", "length": 314 }, "evidence": [ { "id": "A0A287BKJ2", "url": "https://omabrowser.org/oma/group/A0A287BKJ2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q71KU9-1", "protein_name": "Fibrinogen-like protein 1", "gene_name": "Fgl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGKIYSFVLVAIALMMGREGWALESESCLREQVRLRAQVHQLETRVKQQQTMIAQLLHEKEVQFLDKGSENSFIDLGGKRQYADCSEIYNDGFKQSGFYKIKPLQSLAEFSVYCDMSDGGGWTVIQRRSDGSENFNRGWNDYENGFGNFVQNNGEYWLGNKNINLLTIQGDYTLKIDLTDFEKNSSFAQYQSFKVGDKKSFYELNIGEYSGTAGDSLSGTFHPEVQWWASHQRMKFSTWDRDNDNYQGNCAEEEQSGWWFNRCHSANLNGVYYRGSYRAETDNGVVWYTWHGWWYSLKSVVMKIRPSDFIPNII", "length": 314 }, "evidence": [ { "id": "A0A287BKJ2", "url": "https://omabrowser.org/oma/group/A0A287BKJ2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "hepatocyte proliferation", "id": "GO:0072574", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072574", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2" } ], "pmid": "" }, { "name": "blood coagulation", "id": "GO:0007596", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007596", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2" } ], "pmid": "" }, { "name": "regulation of immune response", "id": "GO:0050776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050776", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2" } ], "pmid": "" }, { "name": "adaptive immune response", "id": "GO:0002250", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002250", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2" } ], "pmid": "" }, { "name": "negative regulation of T cell receptor signaling pathway", "id": "GO:0050860", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050860", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2" } ], "pmid": "" }, { "name": "negative regulation of T cell activation", "id": "GO:0050868", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050868", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "receptor ligand activity", "id": "GO:0048018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048018", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BKJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ2" }, { "id": "PS51406", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51406" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibrinogen C-terminal", "eco_id": "ECO_0000259", "start_pos": 78, "end_pos": 310, "start_aa": "Leu", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BKJ3-1", "uniprot_ac": "A0A287BKJ3", "uniprot_id": "A0A287BKJ3_PIG", "mass": { "chemical_mass": 38853.0, "monoisotopic_mass": 38853.0 }, "refseq": {}, "gene_names": [ { "name": "PABPC4L", "type": "recommended", "evidence": [ { "id": "A0A287BKJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3" } ] } ], "protein_names": [ { "name": "Poly(A) binding protein cytoplasmic 4 like", "type": "synonym", "evidence": [ { "id": "A0A287BKJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PABPC4L", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3", "locus": { "chromosome": "8", "start_pos": 92235514, "end_pos": 92234403, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009067", "url": "https://www.ensembl.org/id/ENSSSCG00000009067" } ] } } ], "crossref": [ { "id": "A0A287BKJ3", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BKJ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009067", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009067", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12378", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12378", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12380", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12380", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12381", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12381", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003954", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003954", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034364", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034364", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CQGVKLY", "url": "https://omabrowser.org/oma/group/CQGVKLY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24012", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24012", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVMSDDQGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGRSKGFGLICFSSPEEATKAMTEMNGRILGSKPLNIALAQKP", "length": 341, "header": "tr|A0A287BKJ3-1|A0A287BKJ3_PIG Isoform 1 of Poly(A) binding protein cytoplasmic 4 like OS=Sus scrofa OX=9823 GN=PABPC4L PE=3 SV=1 CANONICAL=A0A287BKJ3-1" }, "isoforms": [ { "isoform_ac": "A0A287BKJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3/entry#A0A287BKJ3-1", "sequence": { "sequence": "MNIAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVMSDDQGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGRSKGFGLICFSSPEEATKAMTEMNGRILGSKPLNIALAQKP", "length": 341, "header": "tr|A0A287BKJ3-1|A0A287BKJ3_PIG Isoform 1 of Poly(A) binding protein cytoplasmic 4 like OS=Sus scrofa OX=9823 GN=PABPC4L PE=3 SV=1 CANONICAL=A0A287BKJ3-1" }, "locus": { "chromosome": "8", "start_pos": 92235511, "end_pos": 92234403, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009932.3", "url": "https://www.ensembl.org/id/ENSSSCT00000009932.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057118.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057118.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LT98-1", "protein_name": "Polyadenylate-binding protein 5", "gene_name": "PABPC4L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNIAAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCQGAKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGRSKGFGLICFSSAEEATKAMTEMNGRILGSKPLNIALAQKP", "length": 370 }, "evidence": [ { "id": "A0A287BKJ3", "url": "https://omabrowser.org/oma/group/A0A287BKJ3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G5E8X2-1", "protein_name": "Polyadenylate-binding protein 5", "gene_name": "Pabpc4l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSLEAKYRAASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQKALVTMNFDVIKGKSIRLMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIMSSKVMTDGEGSKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALGQKH", "length": 370 }, "evidence": [ { "id": "A0A287BKJ3", "url": "https://omabrowser.org/oma/group/A0A287BKJ3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O04319-1", "protein_name": "Polyadenylate-binding protein 6", "gene_name": "PAB6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MALVKTETQALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPRQYTQAPSAPSPAQPVLSYVSSSYGCFQPFQVGTSYYYMGNQVPQMSGHQNITTYVPAGKVPLKERRSMHLVYKHPAYPVAKRGAKQTLVFKGEVNRNLEAATCSKATTSEENRKEERRLTLSGKLSPEVKVEESGKQLQ", "length": 537 }, "evidence": [ { "id": "A0A287BKJ3", "url": "https://omabrowser.org/oma/group/A0A287BKJ3/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0CB38-1", "protein_name": "Polyadenylate-binding protein 4-like", "gene_name": "PABPC4L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQRH", "length": 370 }, "evidence": [ { "id": "A0A287BKJ3", "url": "https://omabrowser.org/oma/group/A0A287BKJ3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3" } ], "pmid": "" }, { "name": "poly(A) binding", "id": "GO:0008143", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008143", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3" } ], "pmid": "" }, { "name": "poly(U) RNA binding", "id": "GO:0008266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008266", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BKJ3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 341, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BKJ3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BKJ3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BKJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ3" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 88, "start_aa": "Ala", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BKJ7-1", "uniprot_ac": "A0A287BKJ7", "uniprot_id": "A0A287BKJ7_PIG", "mass": { "chemical_mass": 70700.0, "monoisotopic_mass": 70700.0 }, "refseq": { "ac": "XP_020957500", "name": "FERM domain-containing protein 6 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957500" }, "gene_names": [ { "name": "FRMD6", "type": "recommended", "evidence": [ { "id": "A0A287BKJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ7" } ] }, { "name": "FRMD6", "type": "synonym", "evidence": [ { "id": "XP_020957500", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957500" } ] } ], "protein_names": [ { "name": "FERM domain-containing protein 6", "type": "recommended", "evidence": [ { "id": "A0A287BKJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ7/entry#names_and_taxonomy" } ] }, { "name": "FERM domain-containing protein 6 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020957500", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957500" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FRMD6", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ7", "locus": { "chromosome": "1", "start_pos": 181416840, "end_pos": 181338525, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005027", "url": "https://www.ensembl.org/id/ENSSSCG00000005027" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005027", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005027", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13185", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13185", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14473", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14473", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17198", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17198", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157790", "url": "https://www.ncbi.nlm.nih.gov/gene/100157790", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019749", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019749", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035963", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035963", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047145", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047145", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QPILRHI", "url": "https://omabrowser.org/oma/group/QPILRHI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BKJ7", "url": "https://www.orthodb.org/?gene=A0A287BKJ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13429", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13429", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13429:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13429:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09379", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09379", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09380", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09380", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020957500", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957500", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BKJ7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFF5", "url": "https://www.uniprot.org/uniprotkb/F1SFF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFF5-1", "url": "https://www.uniprot.org/uniprotkb/F1SFF5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNKLNFHNNRVMQDRRSVCIFLPNDKSLNIIINVKILCHQLLVQVCDLLRLKDCHLFGLSVIQNNEHVYMELSQKLYKYCPKEWKKEASKGIDQFGPPMIIHFRVQYYVENGRLISDRAARFYYYWHLRKQVLHSQCVLREEAYFLLAAFALQADLGNFKRNEHHGKYFEPEAYFPSWVVSKRGKDYILKHIPNMHKDQFALTASEAHLKYIKEAVRLDDVAVHYYRLYKDKREIEASLTLGLTMRGIQIFQNLGEEKQLLYDFPWTNVGKLVFVGKKFEILPDGLPSARKLIYYTGCPSRSRHLLQLLSNSHRLYMNLQPILRHIRKLEENEEKKQYRESYISDNLDLDMDQLEKRSRASGSSAGSMKHKRLSRHSTASHSSSHTSGIEADTKPRDTGPEDTYPGSAIHRKLKTCSSMTSHGSSHTSGVESGGKDRLEEDSQDDEIEMLVDDPRDLEQMNEESLEVSPDMCIYITEDMLLSRKLNGHSGLIVKELGSSTSSSSETVVKLRGQSADSLPQTICRKPKTSTDRHSLSLDDIRLYQKDFLRIAGLCQDAAQSYTFGCGHELDEEGLYCSSCLAQQCVNIQDAFPVKRTSKYFSLDLTHDEVPEFVV", "length": 614, "header": "tr|A0A287BKJ7-1|A0A287BKJ7_PIG Isoform 1 of FERM domain-containing protein 6 OS=Sus scrofa OX=9823 GN=FRMD6 PE=4 SV=2 CANONICAL=A0A287BKJ7-1" }, "isoforms": [ { "isoform_ac": "A0A287BKJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ7/entry#A0A287BKJ7-1", "sequence": { "sequence": "MNKLNFHNNRVMQDRRSVCIFLPNDKSLNIIINVKILCHQLLVQVCDLLRLKDCHLFGLSVIQNNEHVYMELSQKLYKYCPKEWKKEASKGIDQFGPPMIIHFRVQYYVENGRLISDRAARFYYYWHLRKQVLHSQCVLREEAYFLLAAFALQADLGNFKRNEHHGKYFEPEAYFPSWVVSKRGKDYILKHIPNMHKDQFALTASEAHLKYIKEAVRLDDVAVHYYRLYKDKREIEASLTLGLTMRGIQIFQNLGEEKQLLYDFPWTNVGKLVFVGKKFEILPDGLPSARKLIYYTGCPSRSRHLLQLLSNSHRLYMNLQPILRHIRKLEENEEKKQYRESYISDNLDLDMDQLEKRSRASGSSAGSMKHKRLSRHSTASHSSSHTSGIEADTKPRDTGPEDTYPGSAIHRKLKTCSSMTSHGSSHTSGVESGGKDRLEEDSQDDEIEMLVDDPRDLEQMNEESLEVSPDMCIYITEDMLLSRKLNGHSGLIVKELGSSTSSSSETVVKLRGQSADSLPQTICRKPKTSTDRHSLSLDDIRLYQKDFLRIAGLCQDAAQSYTFGCGHELDEEGLYCSSCLAQQCVNIQDAFPVKRTSKYFSLDLTHDEVPEFVV", "length": 614, "header": "tr|A0A287BKJ7-1|A0A287BKJ7_PIG Isoform 1 of FERM domain-containing protein 6 OS=Sus scrofa OX=9823 GN=FRMD6 PE=4 SV=2 CANONICAL=A0A287BKJ7-1" }, "locus": { "chromosome": "1", "start_pos": 181414143, "end_pos": 181374827, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066327.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066327.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056688.3", "url": "https://www.ensembl.org/id/ENSSSCP00000056688.3" } ] } }, { "isoform_ac": "F1SFF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ7/entry#F1SFF5-1", "sequence": { "sequence": "MNKLNFHNNRVMQDRRSVCIFLPNDKSLNIIINVKILCHQLLVQVCDLLRLKDCHLFGLSVIQNNEHVYMELSQKLYKYCPKEWKKEASKGIDQFGPPMIIHFRVQYYVENGRLISDRAARFYYYWHLRKQVLHSQCVLREEAYFLLAAFALQADLGNFKRNEHHGKYFEPEAYFPSWVVSKRGKDYILKHIPNMHKDQFALTASEAHLKYIKEAVRLDDVAVHYYRLYKDKREIEASLTLGLTMRGIQIFQNLGEEKQLLYDFPWTNVGKLVFVGKKFEILPDGLPSARKLIYYTGCPSRSRHLLQLLSNSHRLYMNLQPILRHIRKLEENEEKKQYRESYISDNLDLDMDQLEKRSRASGSSAGSMKHKRLSRHSTASHSSSHTSGIEADTKPRDTGPEDTYPGSAIHRKLKTCSSMTSHGSSHTSGVESGGKDRLEEDSQDDEIEMLVDDPRDLEQMNEESLEVSPDMCIYITEDMLLSRKLNGHSGLIVKELGSSTSSSSETVVKLRGQSADSLPQTICRKPKTSTDRHSLSLDDIRLYQKDFLRIAGLCQDAAQSYTFGCGHELDEEGLYCSSCLAQHKYFSLDLTHDEVPEFVV", "length": 600, "header": "tr|F1SFF5-1|A0A287BKJ7_PIG Computationally mapped isoform of FERM domain-containing protein 6 OS=Sus scrofa OX=9823 GN=FRMD6 PE=4 SV=3 CANONICAL=A0A287BKJ7-1" }, "locus": { "chromosome": "1", "start_pos": 181414143, "end_pos": 181374827, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005543.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005543.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005405.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005405.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFF5", "url": "https://www.uniprot.org/uniprotkb/F1SFF5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZHJ1-1", "protein_name": "FERM domain containing 6", "gene_name": "FRMD6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGTHVWSPWETKARIPAGGNTWGHGRGGRRCPWFVPRTRVCFPQVKILCHELLVQVCDLLRLKDCHLFGLSVIQNNEHVYMDLAQKLYKYCPKEWKKEASKVSGEVLHGEMTALRPPLSPAQGIDQFGPPMIIHFRVQYYVENGRLISDRTARYYYYWHLRKQVLHSQCVLREEAYFLLTAFALQADLGDFKRNKHYGKYFEPEAYFPAWVVAKRGRDYILKHIPNMHKDQFALTASEAHLKYIKEAVRLDDVAVHYYRLYKDKREVDASLTLGLTTRGIQIFQNLDEEKQLLYDFPWTNVGKLVFVGKKFEILPDGLPSARKLIYYTGCPLRSRHLLQLLSSSHRLYMNLQPVLRQVRRLEENEEKKQYRESYISDTLDLDMDQLEKRSRASGSSAGSIRHKRLSRHSTTSHSSSHTSGIEADPKPRDMGPEDAGVHRKLKTCSSMTSHGSSHTSGVESGGKERLEEDLQDDEIEMLVDDPRELERAGELALEVSPDMCVYITEDMLLSRKFNGHSGLIVKELSSSTSSSSETVVKLRGQSTDSLPQTACRKPKTSTDRHSLSLDDIRLYQKDFLQLADLCQDTAQSFTFGCSHGLGDDGLYCNGCLARQCLNIQEGFPAKRTSKYFSLDLTHDEVPEFVV", "length": 642 }, "evidence": [ { "id": "A0A287BKJ7", "url": "https://omabrowser.org/oma/group/A0A287BKJ7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7KA19-1", "protein_name": "FERM domain-containing protein 6", "gene_name": "Frmd6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNKLTFHNNRVMQDRRSVCIFLPNDESLNIIINVKILCHQLLVQVCDLLRLKDCHLFGLSVIQNNEHVYMELSQKLYKYCPKEWKKEASKVRQYEVTWGIDQFGPPMIIHFRVQYYVENGKLISDRVARYYYYWHLKKQVLHSQCVLREEAYFLLAAFALQADLGNFKRNKHRGKYFEPEAYFPAWVVSKRGKEYILKHIPNMHKDQFALTASEAHLKYIKEAVRLDDVAIHYYRLYKDKREVEASLTLGLTMRGIQIFQNLEEEKQLLYDFPWTNVGKLVFVGKKFEILPDGLPSARKLVYYTGCPTRSRHLLQLLSNSHRLYMNLQPVLRHLRKLEENEEKKQYRESYISDNLDLDMDQLEKRSRASGSSAGSVKHKRLSRHSTASHSSSHTSGIEADTKPRDPGPEDSCSGSAMHRKLKTCSSMTSHGSSHTSGVESGGKERLEEDSQDDGNFRCCSFSHVGPVELESEIEMLVDDPTDLEPMTEEVSPDVCIYITEDMLLSRKLNGHSGLIVKEISSSTSSSSETVVKLRGQSTDSLPQTICRKPKTSTDRHSLSLDDIRLYQKDFLRIAGLCQDTAQSYTFGCGHELDEDGLYCNSCLAQQCVNIQDAFPVKRTSKYFSLDLTHDEVPEFVV", "length": 637 }, "evidence": [ { "id": "A0A287BKJ7", "url": "https://omabrowser.org/oma/group/A0A287BKJ7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8C0V9-1", "protein_name": "FERM domain-containing protein 6", "gene_name": "Frmd6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNKLTFHNNKAMQDRRRVCIFLPNDKSVSIIINVKILCHQLLVQVCDLLRLKDSHLFGLSVIQNNEHVYMELSQKLYKYCPKEWKKEASKVRQYEVTWGIDQFGPPMIIHFRVQYYVENGKLISDRIARYYYYWHLRKQVLHSQCVLREEAYFLLAAFALQADLGNFKRKLHHGDYFEPEAYFPAWVVSKRGKDYILKHIPNMHKDQFALTASEAYLKYIKEAVRLDDVAIHYYRLYKDKREAEGSLTLGLTMRGIQIFQNLEEEKQLLYDFPWTNVGKLVFVGKKFEILPDGLPSARKLVYYTGCPTRSRHLLQLLSNSHRLYMNLQPVLRHLRKQEENEEKKQYRESYISDNLDLDMDPLEKRSRASGSSAGSVKHKRLSRHSTASHSSSHTSGIEADTKPRDPGPEDSCSGSAMHRKLKTCSSMTSHGSSHTSGVESGGKDRLEEDSQDEEIEMLVDDPRDLEPMPEESLEVSPEMCIYITEDMLLSRKLNGHSGLIVKEIGSSTSSSSETVVRLRGQSTDSLPQTICRKPKTSTDRHSLSLDDIRLYQKDFLRIAGLCQDTAQSYTFGCGHELDESGLYCNSCLAQQCVNIQDAFPVKRASKYFSLDLTHDEVPEFVV", "length": 622 }, "evidence": [ { "id": "A0A287BKJ7", "url": "https://omabrowser.org/oma/group/A0A287BKJ7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96NE9-1", "protein_name": "FERM domain-containing protein 6", "gene_name": "FRMD6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNKLNFHNNRVMQDRRSVCIFLPNDESLNIIINVKILCHQLLVQVCDLLRLKDCHLFGLSVIQNNEHVYMELSQKLYKYCPKEWKKEASKVRQYEVTWGIDQFGPPMIIHFRVQYYVENGRLISDRAARYYYYWHLRKQVLHSQCVLREEAYFLLAAFALQADLGNFKRNKHYGKYFEPEAYFPSWVVSKRGKDYILKHIPNMHKDQFALTASEAHLKYIKEAVRLDDVAVHYYRLYKDKREIEASLTLGLTMRGIQIFQNLDEEKQLLYDFPWTNVGKLVFVGKKFEILPDGLPSARKLIYYTGCPMRSRHLLQLLSNSHRLYMNLQPVLRHIRKLEENEEKKQYRESYISDNLDLDMDQLEKRSRASGSSAGSMKHKRLSRHSTASHSSSHTSGIEADTKPRDTGPEDSYSSSAIHRKLKTCSSMTSHGSSHTSGVESGGKDRLEEDLQDDEIEMLVDDPRDLEQMNEESLEVSPDMCIYITEDMLMSRKLNGHSGLIVKEIGSSTSSSSETVVKLRGQSTDSLPQTICRKPKTSTDRHSLSLDDIRLYQKDFLRIAGLCQDTAQSYTFGCGHELDEEGLYCNSCLAQQCINIQDAFPVKRTSKYFSLDLTHDEVPEFVV", "length": 622 }, "evidence": [ { "id": "A0A287BKJ7", "url": "https://omabrowser.org/oma/group/A0A287BKJ7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ7" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ7" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of hippo signaling", "id": "GO:0035332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035332", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein sequestering activity", "id": "GO:0140311", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140311", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKJ7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BKJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKJ7" }, { "id": "PS50057", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50057" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FERM", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 320, "start_aa": "Arg", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BKK7-1", "uniprot_ac": "A0A287BKK7", "uniprot_id": "A0A287BKK7_PIG", "mass": { "chemical_mass": 33110.0, "monoisotopic_mass": 33110.0 }, "refseq": { "ac": "XP_020922131", "name": "coiled-coil domain-containing protein 137", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922131" }, "gene_names": [ { "name": "CCDC137", "type": "recommended", "evidence": [ { "id": "A0A287BKK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKK7" } ] }, { "name": "CCDC137", "type": "synonym", "evidence": [ { "id": "XP_020922131", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922131" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 137", "type": "synonym", "evidence": [ { "id": "A0A287BKK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKK7/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 137", "type": "synonym", "evidence": [ { "id": "XP_020922131", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922131" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BKK7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKK7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC137", "url": "https://www.uniprot.org/uniprotkb/A0A287BKK7", "locus": { "chromosome": "12", "start_pos": 1226691, "end_pos": 1232738, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000034716", "url": "https://www.ensembl.org/id/ENSSSCG00000034716" } ] } } ], "crossref": [ { "id": "A0A287BKK7", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BKK7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000034716", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034716", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100626340", "url": "https://www.ncbi.nlm.nih.gov/gene/100626340", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100626340", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626340", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HHGVRDP", "url": "https://omabrowser.org/oma/group/HHGVRDP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BKK7", "url": "https://www.orthodb.org/?gene=A0A287BKK7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21838", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21838", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21838:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21838:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28348", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28348", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020922131", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922131", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BKK7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGVGSRAAAPAGTAGPGRPGRPRGRRQRQPGKQRSAPQPGLHSKEKKKVNCKPKNRDEQEIPFRLREIMRSRQEMKNPISNKKRKKEAQVAFRRTLEKEAKGVESDIAVPKFKQRKWESDGAYVRRMEQEAQHVLFLSKNQASRQPEAQAAPRKEKSERKKAFQKRRLEKVRRRREEAAAERLEQELLRDTVEFGEVALQPPELTAKPRTSGSGGQPGKKPLMLKMLLSSGGVSQPPATSLARRRIVQEERERAVQAYRALKKLQQQQRLGTQSPRPPRPEPGKKPQTRV", "length": 291, "header": "tr|A0A287BKK7-1|A0A287BKK7_PIG Isoform 1 of Coiled-coil domain containing 137 OS=Sus scrofa OX=9823 GN=CCDC137 PE=4 SV=1 CANONICAL=A0A287BKK7-1" }, "isoforms": [ { "isoform_ac": "A0A287BKK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKK7/entry#A0A287BKK7-1", "sequence": { "sequence": "MAGVGSRAAAPAGTAGPGRPGRPRGRRQRQPGKQRSAPQPGLHSKEKKKVNCKPKNRDEQEIPFRLREIMRSRQEMKNPISNKKRKKEAQVAFRRTLEKEAKGVESDIAVPKFKQRKWESDGAYVRRMEQEAQHVLFLSKNQASRQPEAQAAPRKEKSERKKAFQKRRLEKVRRRREEAAAERLEQELLRDTVEFGEVALQPPELTAKPRTSGSGGQPGKKPLMLKMLLSSGGVSQPPATSLARRRIVQEERERAVQAYRALKKLQQQQRLGTQSPRPPRPEPGKKPQTRV", "length": 291, "header": "tr|A0A287BKK7-1|A0A287BKK7_PIG Isoform 1 of Coiled-coil domain containing 137 OS=Sus scrofa OX=9823 GN=CCDC137 PE=4 SV=1 CANONICAL=A0A287BKK7-1" }, "locus": { "chromosome": "12", "start_pos": 1232688, "end_pos": 1227697, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062261.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062261.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057037.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057037.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKK7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKK7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100626340", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626340", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q17QR4-1", "protein_name": "Coiled-coil domain-containing protein 137", "gene_name": "CCDC137", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGLRRGAAAVAPAGTAGFGRPGRPQGRRQQELGKQRAAPRPGPRSKEKKKVNCKPKNQDEQEIPFRLREIMRSRQEMKNPISNKKRKKEAQAAFSKTLEKEAKGVEPDIAIPKFKQRKWESDRAYVRRMEQEAQHVLFLSKNQANRQPEVQAAPKKEKSERKKAFQKRRLDKARQRREEKAAERLEQELLQDTVKFGEVVLQPPELTAKPRMSVSRDQPGKKSLMLKKLLSPGSVSQPLTTSLARQRIVAEERERAVNAYRALKRLQQQRQETQSPQPPHLPPGKKPEMQL", "length": 292 }, "evidence": [ { "id": "A0A287BKK7", "url": "https://omabrowser.org/oma/group/A0A287BKK7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PK04-1", "protein_name": "Coiled-coil domain-containing protein 137", "gene_name": "CCDC137", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGAGRGAAVSRVQAGPGSPRRARGRQQVQPLGKQRPAPWPGLRSKEKKKVNCKPKNQDEQEIPFRLREIMRSRQEMKNPISNKKRKKAAQVTFRKTLEKEAKGEEPDIAVPKFKQRKGESDGAYIHRMQQEAQHVLFLSKNQAIRQPEVQAAPKEKSEQKKAKKAFQKRRLDKVRRKKEEKAADRLEQELLRDTVKFGEVVLQPPELTARPQRSVSKDQPGRRSQMLRMLLSPGGVSQPLTASLARQRIVEEERERAVQAYRALKQRQQQLHGERPHLTSRKKPEPQL", "length": 289 }, "evidence": [ { "id": "A0A287BKK7", "url": "https://omabrowser.org/oma/group/A0A287BKK7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R0K4-1", "protein_name": "Coiled-coil domain-containing protein 137", "gene_name": "Ccdc137", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARPGNIALVTARSAGLRGSGQPQGRRQQQAQGQQRSASLPGQRSKEKKKVNCKPKNQDEQEIPFRLREIMRSRQEMKKTLSNKKRKKEAQVAFKKTLEKEAKGEEPDIAVPKFKQRKGESDVAYVQRMEQEAQHVLFLSKNQAPRQPEVQAAPKKEKSERKKAFQKRRLEKAQRKREARAVDRLEQELLKDTVKFGEVVLQPPELTVQPRRSTSRDAPGKKSLMLKKMLLGPGGGSPAPATSLARQRILGEERERAVQAYRALKKLHRQEMTPAQPPGSSFQRQGHACL", "length": 290 }, "evidence": [ { "id": "A0A287BKK7", "url": "https://omabrowser.org/oma/group/A0A287BKK7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKK7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKK7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKK7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKK7" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKK7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKK7" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKK7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKK7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BKK7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 291, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BKK7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BKK7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BKL0-1", "uniprot_ac": "A0A287BKL0", "uniprot_id": "A0A287BKL0_PIG", "mass": { "chemical_mass": 84413.0, "monoisotopic_mass": 84413.0 }, "refseq": { "ac": "XP_020929670", "name": "TBC1 domain family member 12 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929670" }, "gene_names": [ { "name": "TBC1D12", "type": "recommended", "evidence": [ { "id": "A0A287BKL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL0" } ] }, { "name": "TBC1D12", "type": "synonym", "evidence": [ { "id": "XP_020929670", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929670" } ] } ], "protein_names": [ { "name": "TBC1 domain family member 12 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020929670", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929670" } ] }, { "name": "TBC1 domain family member 12", "type": "synonym", "evidence": [ { "id": "A0A287BKL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BKL0", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TBC1D12", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL0", "locus": { "chromosome": "14", "start_pos": 105920886, "end_pos": 105829858, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010485", "url": "https://www.ensembl.org/id/ENSSSCG00000010485" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010485", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010485", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153334", "url": "https://www.ncbi.nlm.nih.gov/gene/100153334", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GQSARDH", "url": "https://omabrowser.org/oma/group/GQSARDH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BKL0", "url": "https://www.orthodb.org/?gene=A0A287BKL0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020929670", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929670", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BKL0", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGPEDVGACPGRNPKLLPVPAPEPAGLDGKMIRATGGFGGGVDAVEPPEEEEEKETPPPPRQLLRRYLTGAGGQLEPGLCYCPLPACQPRAPPPFSAPLSDACPPYAGSKHRSSEMADACAARHEGMTNGDSGFLPGQDCRDLASAGGREPRHSCLRLEGPGDVGADGEGNQSDWAAPLEDPLRSCCLAAADTEKTEGTGSGSGGRRASDGSGSEDVERPGAGSRSPEEGASAVSTAERTSGGADAEPRLRFSDVHLNSRNTFEVSRLQSARDHLPSAVPRVPSPAAEQGPAGTSARARRSGGFADFFARNLFPKRAKELKSVVHSAPGWKLFGKVPPRENLQKTSKIIQQEYEARTGRTCKPPPQCSRRKNFEFEPLSTTALILEDRPSNLPAKSMEEALRHRQEYDEMVAEAKKREIKEAHKRKKIMKERFKQEENIASAMVIWINEILPNWEVMRSTRRVRELWWQGLPPSVRGKVWSLAVGNELNITPELYEIFLSRAKERWKSFSETSSENDIEGVSVADREASLELIKLDISRTFPSLYIFQKGGPYHDVLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLEEADAFIAFANLLNKPCQLAFFRVDHSMMLKYFATFEVFFEENLSKLFLHFKSYSLTPDIYLIDWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTGLGILRLYEDILLKMDFIHIAQFLTKLPEDITSEKLFSCIAAIQMQNSTKKWTQVFASVMKDIKEGDKNNSPALKS", "length": 762, "header": "tr|A0A287BKL0-1|A0A287BKL0_PIG Isoform 1 of TBC1 domain family member 12 OS=Sus scrofa OX=9823 GN=TBC1D12 PE=4 SV=1 CANONICAL=A0A287BKL0-1" }, "isoforms": [ { "isoform_ac": "A0A287BKL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL0/entry#A0A287BKL0-1", "sequence": { "sequence": "MVGPEDVGACPGRNPKLLPVPAPEPAGLDGKMIRATGGFGGGVDAVEPPEEEEEKETPPPPRQLLRRYLTGAGGQLEPGLCYCPLPACQPRAPPPFSAPLSDACPPYAGSKHRSSEMADACAARHEGMTNGDSGFLPGQDCRDLASAGGREPRHSCLRLEGPGDVGADGEGNQSDWAAPLEDPLRSCCLAAADTEKTEGTGSGSGGRRASDGSGSEDVERPGAGSRSPEEGASAVSTAERTSGGADAEPRLRFSDVHLNSRNTFEVSRLQSARDHLPSAVPRVPSPAAEQGPAGTSARARRSGGFADFFARNLFPKRAKELKSVVHSAPGWKLFGKVPPRENLQKTSKIIQQEYEARTGRTCKPPPQCSRRKNFEFEPLSTTALILEDRPSNLPAKSMEEALRHRQEYDEMVAEAKKREIKEAHKRKKIMKERFKQEENIASAMVIWINEILPNWEVMRSTRRVRELWWQGLPPSVRGKVWSLAVGNELNITPELYEIFLSRAKERWKSFSETSSENDIEGVSVADREASLELIKLDISRTFPSLYIFQKGGPYHDVLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLEEADAFIAFANLLNKPCQLAFFRVDHSMMLKYFATFEVFFEENLSKLFLHFKSYSLTPDIYLIDWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTGLGILRLYEDILLKMDFIHIAQFLTKLPEDITSEKLFSCIAAIQMQNSTKKWTQVFASVMKDIKEGDKNNSPALKS", "length": 762, "header": "tr|A0A287BKL0-1|A0A287BKL0_PIG Isoform 1 of TBC1 domain family member 12 OS=Sus scrofa OX=9823 GN=TBC1D12 PE=4 SV=1 CANONICAL=A0A287BKL0-1" }, "locus": { "chromosome": "14", "start_pos": 105918246, "end_pos": 105829958, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058672.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058672.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057138.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057138.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKL0", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "M0R7T9-1", "protein_name": "TBC1 domain family member 12", "gene_name": "Tbc1d12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMGPEDAGACSGRNAELLPVPGPMGQDGKTVPATGGFSGGAVAAEPPGEAGEEEAPPPRQLLQRYLAAAAGPLQPGLGGVEAEAAAVPAARGSGMTNGDSGFLLLQDRRGPEEARRRRTCGRPCLAEPADEGVDGAGGLDDWAAPLEDPLRSCCLAAGDTDDPDPTATTSAGRDVGSAESSLGLPDARFGSRNTFEVSRRQSAGDLLPSAGQSAPLPAAEQGPGGTTVRARRSGGFADFFARNLFPKRTKELKSVVHSAPGWKLFGKVPPRENLQKTSKIIQQEYEARTGRTCKVPPQSSRRKNFEFEPLSTTALILEDRPSNLPAKSVEEALRHRQEYDEMVAEAKKREIKEAHKRKRIMKERFKQEESIASAMVIWINEILPNWEVMRSTRRVRELWWQGLPPSVRGKVWSLAVGNELNITPELYEIFLSRAKERWKSFSESSSDSDMEGLSVADREASLELIKLDISRTFPSLYIFQKGGPYHDVLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLEEADAFIAFANLLNRPCQLAFFRVDHSMMLKYFATFEVFFEENLSKLFLHFKSYNLTPDIYLIDWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTGLGILRLYEDILLQMDFIHIAQFLTKLPEDITSEKLFSCIAAIQMQNSTKKWTQVFASVTKDIKEGDKNNSPALKS", "length": 693 }, "evidence": [ { "id": "A0A287BKL0", "url": "https://omabrowser.org/oma/group/A0A287BKL0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O60347-1", "protein_name": "TBC1 domain family member 12", "gene_name": "TBC1D12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVGPEDAGACSGRNPKLLPVPAPDPVGQDRKVIRATGGFGGGVGAVEPPEEADEEEEADEEEETPPRQLLQRYLAAAGEQLEPGLCYCPLPAGQAGAPPPSAAPRSDACLLGSGSKHRGAEVADGRAPRHEGMTNGDSGFLPGRDCRDLEEARGLARAGGRESRRRRPYGRLRLEGPGDEDADGAGSPSDWASPLEDPLRSCCLVAADAQEPEGAGSDSGDSPASSCSSSEDSEQRGVGAGGPEEGAPPATSAERTNGGAEPRLGFSDIHFNSRNTFQVSRGQSARDHLPPAGPPVPLPAAEQGPAGASARARRSGGFADFFTRNLFPKRTKELKSVVHSAPGWKLFGKVPPRENLQKTSKIIQQEYEARTGRTCKPPPQSSRRKNFEFEPLSTTALILEDRPSNLPAKSVEEALRHRQEYDEMVAEAKKREIKEAHKRKRIMKERFKQEENIASAMVIWINEILPNWEVMRSTRRVRELWWQGLPPSVRGKVWSLAVGNELNITPELYEIFLSRAKERWKSFSETSSENDTEGVSVADREASLELIKLDISRTFPSLYIFQKGGPYHDVLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLEEADAFIAFANLLNKPCQLAFFRVDHSMMLKYFATFEVFFEENLSKLFLHFKSYSLTPDIYLIDWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTGLGILRLYEDILLQMDFIHIAQFLTKLPEDITSEKLFSCIAAIQMQNSTKKWTQVFASVMKDIKEGDKNSSPALKS", "length": 775 }, "evidence": [ { "id": "A0A287BKL0", "url": "https://omabrowser.org/oma/group/A0A287BKL0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6A039-1", "protein_name": "TBC1 domain family member 12", "gene_name": "Tbc1d12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMGPEDAGACSGRNAELLPVPGPMGQDGKTVPATSGFSGGAVAAEPPEEAGEEEAPPPRQLLQRYLAAAAGPLKPGLGGAEAEEAAAAAVPAARGSGMTNGDSGFLLRQDRRGPEEARRRRTCGRPCLLEPADEGVDGAGGLDDWAAPLEDPLRSCCLAAGDTDDPDPAAATPAGRAVESAEPSLGLPDARFGSRNTFEVSRRQSAGDLLPSAGPSAPLPAAEQGPGGTTARARRSGGFADFFARNLFPKRTKELKSVVHSAPGWKLFGKVPPRENLQKTSKIIQQEYEARTGRTCKAAPQSSRRKSFALEPLSTTALILEDRPPNLPAKSVEEALRHRQEYDEMVAEAKKREIKEAHKRKRIMKERFKQEESIASAMVIWINEILPNWEVMRSTRRVRELWWQGLPPSVRGKVWSLAVGNELNITPELYEIFLSRAKERWKSFSESSSENDTEGLSVADREASLELIKLDISRTFPSLYIFQKGGPYHDVLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLEEADAFIAFANLLNKPCQLAFFRVDHSMMLKYFATFEVFFEENLSKLFLHFKSYNLTPDIYLIDWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTGLGILRLYEDILLQMDFIHIAQFLTKLPEDITSEKLFSCIAAIQMQNSTKKWTQVFASVAKDIKEGDKNTSPALKS", "length": 696 }, "evidence": [ { "id": "A0A287BKL0", "url": "https://omabrowser.org/oma/group/A0A287BKL0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKL0", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL0" } ], "pmid": "" }, { "name": "enzyme binding", "id": "GO:0019899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019899", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKL0", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "recycling endosome", "id": "GO:0055037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055037", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKL0", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL0" } ], "pmid": "" }, { "name": "autophagosome", "id": "GO:0005776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005776", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKL0", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKL0", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL0" } ], "pmid": "" }, { "name": "regulation of autophagosome assembly", "id": "GO:2000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000785", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKL0", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 490, "end_pos": 492, "annotation": "n_glycosylation_sequon" }, { "start_pos": 632, "end_pos": 634, "annotation": "n_glycosylation_sequon" }, { "start_pos": 733, "end_pos": 735, "annotation": "n_glycosylation_sequon" }, { "start_pos": 755, "end_pos": 757, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BKL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL0" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 471, "end_pos": 679, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 172, "end_pos": 174 }, { "start_pos": 490, "end_pos": 492 }, { "start_pos": 632, "end_pos": 634 }, { "start_pos": 733, "end_pos": 735 }, { "start_pos": 755, "end_pos": 757 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BKL4-1", "uniprot_ac": "A0A287BKL4", "uniprot_id": "A0A287BKL4_PIG", "mass": { "chemical_mass": 162030.0, "monoisotopic_mass": 162030.0 }, "refseq": { "ac": "XP_020951192", "name": "myomesin-3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951192" }, "gene_names": [ { "name": "MYOM3", "type": "recommended", "evidence": [ { "id": "A0A287BKL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL4" } ] }, { "name": "MYOM3", "type": "synonym", "evidence": [ { "id": "XP_020951192", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951192" } ] } ], "protein_names": [ { "name": "Myomesin-3", "type": "recommended", "evidence": [ { "id": "A0A287BKL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL4/entry#names_and_taxonomy" } ] }, { "name": "Myomesin family member 3", "type": "synonym", "evidence": [ { "id": "A0A287BKL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL4/entry#names_and_taxonomy" } ] }, { "name": "myomesin-3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020951192", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951192" } ] } ], "function": [ { "annotation": "May link the intermediate filament cytoskeleton to the M-disk of the myofibrils in striated muscle.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKL4", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL4#function" }, { "database": "UniProtKB", "id": "ARBA00053644", "url": "https://www.uniprot.org/uniprotkb/ARBA00053644#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BKL4", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYOM3", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL4", "locus": { "chromosome": "6", "start_pos": 81803877, "end_pos": 81860046, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036534", "url": "https://www.ensembl.org/id/ENSSSCG00000036534" } ] } } ], "crossref": [ { "id": "ENSSSCG00000036534", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036534", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102166275", "url": "https://www.ncbi.nlm.nih.gov/gene/102166275", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060200", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060200", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102166275", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102166275", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BKL4", "url": "https://www.orthodb.org/?gene=A0A287BKL4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13817", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13817", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13817:SF89", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13817:SF89", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28321", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28321", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020951192", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951192", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BKL4", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTLPHSPGGVGEPRPPQTVQVHRLEHRQEEEQKEERQHSLHMGSSTRRHTFRSSEEEYQFSAADYALAAALALTASSETSWEAQLRRQTSTVELEERGQKRVGFDNEWERTEVAFLRTQWLLRQRRDRKALRRRTEDKVQKAKELRELCSGRGPWFWIPLRSHAVWEHSTVLLTCTVQASPPPQVTWYKNDIRIDPRLFPAGKYRITNNYGLLTLGIRRCTIEDAATYTVMVKNAYGQASSFAKVLVRTYLGKDAGFDSEIFKRLMMGPSVEFTSVLKPVFAREKESFSLCCLFSEDVLDAEQNIQWFQDGRLLRSSGRRQTLYGDRQATLKVSCAYKEDEGLYTIQVPSPFGPREQSAYVFVRDAAAEKPGAPGSPLNVQCLNVNRDCLILTWTPPSDTRGNPITGYSIELCQGESEQWVPCHQAPGGTCRCPIQGLIEGQSYRFRVRAISRAGSSVPSKASEPVVMGDREEALRKTEIPFDLGKTITVSTDDFEEAVTIPSPPTDVHASEIRDAYVVLAWEEPKPRGRAPLTYFLEKSVIGSGTWEAISSETPVKSRRFALLDLEKGKSYVFRVRAVNQYGMSDPSEPSEPIALKGKPATLPPPAQVQAFRDTQTSVSLTWEPVKDSAELLGYYIYSRAAGSSEWQTVNNKPIQGNKFTVPGLRTGKEYEFCIRSVSEAGVGESSAPTEPIRVKQALATPSAPYDFILLNCGKNDMVIGWKPPKRRGGCKILGYFLDQHDSEELDWHAVNQQPVPTQFCKVSSLQEGHFYEFRARAANLAGVGELSAPSSLFECKEWTMPQPGPPYDVQVFEVRATSLMLKWEAPLYKGAGPVTGYLVSFQEEGSEQWKPVTPHPISGTHLRVSDLQPGKTYVFQVQAVNSAGPGQPSMPTDPVLLEDRPDAREIEVGVDDEGFIYMAFEAPEAPDSAEFQWSKDYKGPPDPQRVKVEEEVNKSKIILKDPGPEDLGTYSVVVTDADEEISASHTLTQEELDKLKKLSHEIRNPVIKLISGWNVDILERGEVRLWLEVEKLSPAAELHLIFNDKEIFSSPNRKINFVREKGLVEVIIQNLTEDDKGSYTAQLQDGKAKNQITLALVDDEFDKLLRKADAKRRDWKRKQGPYFEEPLQWKVTEDCQVLLTCKVTNTKKETRFQWFFQKREFPAGQYDPQTGAGLVCIEELSKEDKGVYRAEVSDDRGEDDTILDLTGEALDDIFTELGRIGALSATPLKIQGTEEGIRIFSRVKYYNVKYMKTTWFHKEKRLESGDRVRAGTTLDEIWLHILDPKDSDKGKYTLEIAAGKEVRQLSTDLSGQAFEDAMAEHQRLKALAIIEKNRAKVVRGLPDVATIMEDKTLCLTCVVSGDPAPEISWLKNDQPVTFLDRYHMEVRGSEVTITIERVNSEDSGRYGVFVKNKYGSETGQVTISVFKHGEEDKVLKM", "length": 1438, "header": "tr|A0A287BKL4-1|A0A287BKL4_PIG Isoform 1 of Myomesin-3 OS=Sus scrofa OX=9823 GN=MYOM3 PE=4 SV=2 CANONICAL=A0A287BKL4-1" }, "isoforms": [ { "isoform_ac": "A0A287BKL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKL4/entry#A0A287BKL4-1", "sequence": { "sequence": 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"https://www.reactome.org/PathwayBrowser/#R-SSC-9840309", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "17929", "url": "https://www.rhea-db.org/rhea/17929", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "43312", "url": "https://www.rhea-db.org/rhea/43312", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46340", "url": "https://www.rhea-db.org/rhea/46340", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "47904", "url": "https://www.rhea-db.org/rhea/47904", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "47916", "url": "https://www.rhea-db.org/rhea/47916", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BKW7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKW7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGAMGAAEPLRSVLWVKQQRCAVSLDPARALLRWWRSPGPGAGDPGADACSVPVSEIITVEETDVNGKQYSSGKWQKMERPYAFTVHRVRRARRHRWRWAQVTFWCADEQVHQLWLQTLRELLEKLTSRPKHLLVFVNPGGKGHGRRVYERKVAPLFALASITAEIIVTERANHAKESLYELNIDKYDGIVCVGGDGMFSEVLHGLVGRTQRDAGVDQNHPRAALVPSPLRIGIIPAGSTDCVCYSTVGTNDAETSALHIILGDSLSMDVSSVHHGGTLLRYFVSLLGYGFYGDLIKDSEKKRWMGLVRYDFSGLKTFLSHHCYEGTVSFLPAQHAVGSPRDRKPCRAGCFVCRQSRQQLEEEQKRSLYGLESTEEVEEWKVICGQFLAINATNMSCACPRSPRGLSPAAHLGDGSSDLILIRKCSRFNFLRFLVRHTNQGDQFDFTFVEVYRVKKFQFVSKTAGDEDSSVEGRGKKRFGQLCSDHPPCSCAASSSSWNCDGEVLNSSAVEVRVHCQLVRLFARGIEEPPRREWHS", "length": 536, "header": "tr|A0A287BKW7-1|A0A287BKW7_PIG Isoform 1 of Ceramide kinase OS=Sus scrofa OX=9823 GN=CERK PE=4 SV=3 CANONICAL=A0A287BKW7-1" }, "isoforms": [ { "isoform_ac": "A0A287BKW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKW7/entry#A0A287BKW7-1", "sequence": { "sequence": "MGAMGAAEPLRSVLWVKQQRCAVSLDPARALLRWWRSPGPGAGDPGADACSVPVSEIITVEETDVNGKQYSSGKWQKMERPYAFTVHRVRRARRHRWRWAQVTFWCADEQVHQLWLQTLRELLEKLTSRPKHLLVFVNPGGKGHGRRVYERKVAPLFALASITAEIIVTERANHAKESLYELNIDKYDGIVCVGGDGMFSEVLHGLVGRTQRDAGVDQNHPRAALVPSPLRIGIIPAGSTDCVCYSTVGTNDAETSALHIILGDSLSMDVSSVHHGGTLLRYFVSLLGYGFYGDLIKDSEKKRWMGLVRYDFSGLKTFLSHHCYEGTVSFLPAQHAVGSPRDRKPCRAGCFVCRQSRQQLEEEQKRSLYGLESTEEVEEWKVICGQFLAINATNMSCACPRSPRGLSPAAHLGDGSSDLILIRKCSRFNFLRFLVRHTNQGDQFDFTFVEVYRVKKFQFVSKTAGDEDSSVEGRGKKRFGQLCSDHPPCSCAASSSSWNCDGEVLNSSAVEVRVHCQLVRLFARGIEEPPRREWHS", "length": 536, "header": "tr|A0A287BKW7-1|A0A287BKW7_PIG Isoform 1 of Ceramide kinase OS=Sus scrofa OX=9823 GN=CERK PE=4 SV=3 CANONICAL=A0A287BKW7-1" }, "locus": { "chromosome": "5", "start_pos": 2867758, "end_pos": 2818897, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036935.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036935.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056718.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056718.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKW7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKW7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9840309", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840309", "resource": "Reactome", "description": "Glycosphingolipid biosynthesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "magnesium ion binding", "id": "GO:0000287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000287", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKW7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKW7" } ], "pmid": "" }, { "name": "ceramide kinase activity", "id": "GO:0001729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001729", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKW7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKW7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKW7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKW7" } ], "pmid": "" }, { "name": "cytoplasmic side of trans-Golgi network membrane", "id": "GO:0160281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160281", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKW7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKW7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "ceramide metabolic process", "id": "GO:0006672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006672", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKW7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKW7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 391, "end_pos": 393, "annotation": "n_glycosylation_sequon" }, { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" }, { "start_pos": 506, "end_pos": 508, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17929", "name": "", "equation": "an N-acylsphing-4-enine + ATP = an N-acylsphing-4-enine 1-phosphate + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17929", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17929" } ] }, { "id": "43312", "name": "", "equation": "N-(hexanoyl)sphing-4-enine + ATP = N-hexanoylsphing-4-enine 1-phosphate + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "43312", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/43312" } ] }, { "id": "46340", "name": "", "equation": "N-hexadecanoylsphing-4-enine + ATP = N-(hexadecanoyl)-sphing-4-enine-1-phosphate + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46340", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46340" } ] }, { "id": "47904", "name": "", "equation": "N-(acetyl)-sphing-4-enine + ATP = N-(acetyl)-sphing-4-enine-1-phosphate + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "47904", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/47904" } ] }, { "id": "47916", "name": "", "equation": "N-hexanoyl-(4R)-hydroxysphinganine + ATP = N-hexanoyl-(4R)-hydroxysphinganine-1-phosphate + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "47916", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/47916" } ] }, { "id": "R-SSC-1638845", "name": "CERK phosphorylates CERA to form C1P", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [ "R-ALL-429807" ], "output_participant_list": [ "R-ALL-1638840" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1638845", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1638845" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-1638840", "participant_name": "C1P [plasma membrane]", "crossref": [ { "id": "C02960", "database": "COMPOUND", "url": "" }, { "id": "16197", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-429807", "participant_name": "CERA [plasma membrane]", "crossref": [ { "id": "83273", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BKW7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 536, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": 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"table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BL56-1", "uniprot_ac": "A0A287BL56", "uniprot_id": "A0A287BL56_PIG", "mass": { "chemical_mass": 23686.0, "monoisotopic_mass": 23686.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Pseudouridine 5'-phosphatase", "type": "synonym", "evidence": [ { "id": "A0A287BL56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BL56/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BL56", "url": "https://www.uniprot.org/uniprotkb/A0A287BL56" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287BL56", "locus": {} } ], "crossref": [ { "id": "A0A287BL56", 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"Other" ] }, { "id": "54816", "url": "https://www.rhea-db.org/rhea/54816", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BLG6", "url": "https://www.uniprot.org/uniprotkb/A0A287BLG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLG6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKL0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGIRVTKVDWQRLRNGAAHHTQEYPCPELVVRRGQKFTFTLELNKSLEYTETLIFTVETGPQASEALRTKAVFQTSELTVDDSWTAVKEAQTENATTVSLTSPPDAVIGRYQLSARVSSRRKHNDRKLGEFVLLFNPWCPEDDVFLASEEERQEYVLNDSGIIFRGVEKHIRAQGWNFGQFEEDILHICLSILDRSPSHQDDPATDVSRRHDPIYVTRAVSAMVNSNNDRGVVQGQWKGKYGGGTSPLQWRGSVAILHKWFKGRFKPVKYGQCWVFAGVMCTVLRCLGIATRIVSNFNSAHDTDRNLSVDKYVDSFGRTLEDLTEDSMWNFHVWNESWFARQDLGSSYNGWQVLDATPQEESEGVFRCGPASVTAIREGDVHLAHDGPFVFAEVNADYITWLWNEDESRERVYSDTKKIGRCISTKAVGSDSRVDITSLYKYPEGSRKERQVYSKAVKKLFGVDASGRRARVRRAGGRGLRCDELLKPATKPSIAGKFKVLEPPLLGHDLRLALCLANLTSRSQRVHVNLSGATILYTRRPVAEILHESHAVKLGPEEEKKIPVEISYSQYKEDLTEDKKILLAALCLVTKGEKLLVEKDITLEDVISIKVLGPAVVGVAVAVEVMVVNPLLEKVEDCVLMVEGSGLLQGQLSISVPSLEPQERASVQFSITPSKSGSRQLQVDLVSPRFPDIKGFVIIHVATAK", "length": 706, "header": "tr|A0A287BLG6-1|A0A287BLG6_PIG Isoform 1 of protein-glutamine gamma-glutamyltransferase OS=Sus scrofa OX=9823 GN=TGM6 PE=3 SV=2 CANONICAL=A0A287BLG6-1" }, "isoforms": [ { "isoform_ac": "A0A287BLG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLG6/entry#A0A287BLG6-1", "sequence": { "sequence": "MAGIRVTKVDWQRLRNGAAHHTQEYPCPELVVRRGQKFTFTLELNKSLEYTETLIFTVETGPQASEALRTKAVFQTSELTVDDSWTAVKEAQTENATTVSLTSPPDAVIGRYQLSARVSSRRKHNDRKLGEFVLLFNPWCPEDDVFLASEEERQEYVLNDSGIIFRGVEKHIRAQGWNFGQFEEDILHICLSILDRSPSHQDDPATDVSRRHDPIYVTRAVSAMVNSNNDRGVVQGQWKGKYGGGTSPLQWRGSVAILHKWFKGRFKPVKYGQCWVFAGVMCTVLRCLGIATRIVSNFNSAHDTDRNLSVDKYVDSFGRTLEDLTEDSMWNFHVWNESWFARQDLGSSYNGWQVLDATPQEESEGVFRCGPASVTAIREGDVHLAHDGPFVFAEVNADYITWLWNEDESRERVYSDTKKIGRCISTKAVGSDSRVDITSLYKYPEGSRKERQVYSKAVKKLFGVDASGRRARVRRAGGRGLRCDELLKPATKPSIAGKFKVLEPPLLGHDLRLALCLANLTSRSQRVHVNLSGATILYTRRPVAEILHESHAVKLGPEEEKKIPVEISYSQYKEDLTEDKKILLAALCLVTKGEKLLVEKDITLEDVISIKVLGPAVVGVAVAVEVMVVNPLLEKVEDCVLMVEGSGLLQGQLSISVPSLEPQERASVQFSITPSKSGSRQLQVDLVSPRFPDIKGFVIIHVATAK", "length": 706, "header": "tr|A0A287BLG6-1|A0A287BLG6_PIG Isoform 1 of protein-glutamine gamma-glutamyltransferase OS=Sus scrofa OX=9823 GN=TGM6 PE=3 SV=2 CANONICAL=A0A287BLG6-1" }, "locus": { "chromosome": "17", "start_pos": 33155069, "end_pos": 33108572, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042396.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042396.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057010.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057010.2" } ] } }, { "isoform_ac": "A0A5G2QKL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLG6/entry#A0A5G2QKL0-1", "sequence": { "sequence": "MAGIRVTKVDWQRLRNGAAHHTQEYPCPELVVRRGQKFTFTLELNKSLEYTETLIFTVETGPQASEALRTKAVFQTSELTVDDSWTAVKEAQTENATTVSLTSPPDAVIGRYQLSARVSSRRKHNDRKLGEFVLLFNPWCPEDDVFLASEEERQEYVLNDSGIIFRGVEKHIRAQGWNFGQFEEDILHICLSILDRSPSHQDDPATDVSRRHDPIYVTRAVSAMVNSNNDRGVVQGQWKGKYGGGTSPLQWRGSVAILHKWFKGRFKPVKYGQCWVFAGVMCTVLRCLGIATRIVSNFNSAHDTDRNLSVDKYVDSFGRTLEDLTEDSMWNFHVWNESWFARQDLGSSYNGWQVLDATPQEESEGVFRCGPASVTAIREGDVHLAHDGPFVFAEVNADYITWLWNEDESRERVYSDTKKIGRCISTKAVGSDSRVDITSLYKYPEGSRKERQVYSKAVKKLFGVDASGRRARVRRAGGRGLRCDELLKPATKPSIAGKFKVLEPPLLGHDLRLALCLANLTSRSQRVHVNLSGATILYTRRPVAEILHESHAVKLGPEEEKKIPVEISYSQYKEDLTEDKKILLAALCLVTKGEKLLVEKDITLEDVISIKCAQPGAPGESLRSVQ", "length": 626, "header": "tr|A0A5G2QKL0-1|A0A287BLG6_PIG Computationally mapped isoform of protein-glutamine gamma-glutamyltransferase OS=Sus scrofa OX=9823 GN=TGM6 PE=3 SV=1 CANONICAL=A0A287BLG6-1" }, "locus": { "chromosome": "17", "start_pos": 33155069, "end_pos": 33108678, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073061.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073061.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065369.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065369.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 218, "start_aa": "Thr", "end_pos": 218, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr218", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKL0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287BLG6", "url": "https://www.uniprot.org/uniprotkb/A0A287BLG6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A287BLG6", "url": "https://www.uniprot.org/uniprotkb/A0A287BLG6" } ], "pmid": "" }, { "name": "protein-glutamine gamma-glutamyltransferase activity", "id": "GO:0003810", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003810", "evidence": [ { "database": "UniProtKB", "id": "A0A287BLG6", "url": "https://www.uniprot.org/uniprotkb/A0A287BLG6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "peptide cross-linking", "id": "GO:0018149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0018149", "evidence": [ { "database": "UniProtKB", "id": "A0A287BLG6", "url": "https://www.uniprot.org/uniprotkb/A0A287BLG6" } ], "pmid": "" } ] } ] }, 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"ENSSSCT00000049154.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049154.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057309.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057309.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 106, "start_aa": "Thr", "end_pos": 106, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr106", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", 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"MTVEKLYKLSVDIRKIRRLKGWVLLEDETYVEEIADILQQLGANQTAVASILERCPEAIICSPTAINTQRELWQLVCKNKEELVKLIEQFPESFFTVKDQENQKLNVQFFQELGLKNVVISRFLTTASNIFHNPLEKNKQMIKILQESYLNLGGSEANMKVWLLKLLSQNPFILLKSSAAIKETLEFLQEQGFTNFEILQLLSKLKGFLFQLCPRSIQNSMSFTENAFKCTDHDLKQLVLKCPALLYYSVAVLEERIQGLLKEGISITQIRETPMVLELTPQIVQYRIRKLNSLGYRVKDGHLAHLNGTKKEFEENFGKIQAKKGRPLFNPVAPLDVEE", "length": 339, "header": "tr|A0A287BLN2-1|A0A287BLN2_PIG Isoform 1 of Mitochondrial transcription termination factor 2 OS=Sus scrofa OX=9823 GN=MTERF2 PE=3 SV=1 CANONICAL=A0A287BLN2-1" }, "locus": { "chromosome": "5", "start_pos": 13375409, "end_pos": 13374393, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068358.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068358.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063973.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063973.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BLN2", "url": "https://www.uniprot.org/uniprotkb/A0A287BLN2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "F1MI83-1", "protein_name": "Mitochondrial transcription termination factor 2", "gene_name": "MTERF2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLSKLLMRSQPCRLCSFRKRLSAPKYRPFLAFFTCTTDSQSKKENKKTVEKLFKLSVDIRKIRRLKGWVLLEDETYVEEIANILQQLGASETAVASILERCPEAIICSPTAVNTQRELWQLVCKNEEKLVKLIEQFPESFFTVKDQENRKLNIQFFQELGLKNVVISRFLTTASNIFHNPIEKNKQVIKILQESYLNLGGSEANMKVWLLKLLSQNPFILLNSSAAIKETLEFFQKQGFTNFEILQLLSKLKGFLFQLCPRSIQNSMSFSKNAFKSTDHDLKQLVLKCPALLYYSVPVLEERIQGLLKEGISIAQIRETPMVLELTPQIVQYRIRKLNSLGYGIKDGHLANINGTKKEFEANFGKIQAKKGRPLFNPVAPLNVEE", "length": 385 }, "evidence": [ { "id": "A0A287BLN2", "url": "https://omabrowser.org/oma/group/A0A287BLN2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q49AM1-1", "protein_name": "Transcription termination factor 2, mitochondrial", "gene_name": "MTERF2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLWKLLLRSQSCRLCSFRKMRSPPKYRPFLACFTYTTDKQSSKENTRTVEKLYKCSVDIRKIRRLKGWVLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEELIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMVRILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVPVLEERMQGLLREGISIAQIRETPMVLELTPQIVQYRIRKLNSSGYRIKDGHLANLNGSKKEFEANFGKIQAKKVRPLFNPVAPLNVEE", "length": 385 }, "evidence": [ { "id": "A0A287BLN2", "url": "https://omabrowser.org/oma/group/A0A287BLN2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5XIE2-1", "protein_name": "Transcription termination factor 2, mitochondrial", "gene_name": "Mterf2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSWRLLTGYQLCRLRLFRKPQPALKIRPSSVCVTYGTDCQSNKENKRTVETLRACSVDIGKICRLKGWVLLEEETYAEEIANILKELGANQTVIASILERCPEAIVCSPAAVNTKRKLWQMVCKTKTELIQLIEQFPESFFAVKDQENQKLNVQFFQELGLKNVVITRFLTTASSIFHNPVENNKQMIGVLLESYLNLGGSEANAKVWLLKLLSQNPFIVLSSPTAVGEVLKFLQGQGFTDSEVLQLLSKLKGFLFQLQPGSIQNSISFTKTTFECTDHDLRQLVVKCPALLYYPAPVLEERIQALLKEGISVAQIRASPMVLELTPQIIQYRIRKLNSLGYGIKDGHLASLNGTKKEFEANFSKMQAKQGRPLFNPVASLKVEE", "length": 385 }, "evidence": [ { "id": "A0A287BLN2", "url": "https://omabrowser.org/oma/group/A0A287BLN2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BKY8-1", "protein_name": "Transcription termination factor 2, mitochondrial", "gene_name": "Mterf2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPWRLPTGHQLCRLCLLRKPRPALKIKPSSACVTYGTDSQSDKENKRTVEKLSACSVDIRKIRRLKGWVLLEEETYVEEIANILKELGANKTVIASILERCPEAIICSPAAVNTKRKLWQMVCKNEAELVQLIEQFPESFFTVKNQENQKLNVQFFQELGLRNVVISRFLTTASSIFHNPVENNKQMIGVLQESYLNLGGSEANAKVWLLKLLSQNPFIVLHSPRAVGETLKCLQGQGFTDSEVLQLLSKLKGFLFQLQPGSIQNSISFTKTTFECTDYDLRQLVVKCPALLCYPASVLEERIQALLKEGISIAQIRESPMVLELTPQIIQYRIRKLNSLGYGIKDGHLASLNGTKKEFEANFSKMQAKQGRPLFNPVASLKVEE", "length": 385 }, "evidence": [ { "id": "A0A287BLN2", "url": "https://omabrowser.org/oma/group/A0A287BLN2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "termination of mitochondrial transcription", "id": "GO:0006393", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006393", "evidence": [ { "database": "UniProtKB", "id": "A0A287BLN2", "url": "https://www.uniprot.org/uniprotkb/A0A287BLN2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287BLN2", "url": "https://www.uniprot.org/uniprotkb/A0A287BLN2" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A287BLN2", "url": "https://www.uniprot.org/uniprotkb/A0A287BLN2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "A0A287BLN2", "url": "https://www.uniprot.org/uniprotkb/A0A287BLN2" } ], "pmid": "" }, { "name": "mitochondrial nucleoid", "id": "GO:0042645", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042645", "evidence": [ { "database": "UniProtKB", "id": "A0A287BLN2", "url": "https://www.uniprot.org/uniprotkb/A0A287BLN2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 307, "end_pos": 309, "annotation": "n_glycosylation_sequon" }, { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 307, "end_pos": 309 }, { "start_pos": 44, "end_pos": 46 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"length": 1760, "header": "tr|A0A287BLT9-1|A0A287BLT9_PIG Isoform 1 of FERM and PDZ domain containing 3 OS=Sus scrofa OX=9823 GN=FRMPD3 PE=4 SV=1 CANONICAL=A0A287BLT9-1" }, "locus": { "chromosome": "X", "start_pos": 88051099, "end_pos": 87981121, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061469.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061469.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057034.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057034.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1196, "start_aa": "Thr", "end_pos": 1196, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1196", "evidence": [ { "id": 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"id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620237", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620237", "resource": "KEGG Pathway" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1690, "end_pos": 1692, "annotation": "n_glycosylation_sequon" }, { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" }, { "start_pos": 676, "end_pos": 678, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" }, { "start_pos": 775, "end_pos": 777, "annotation": "n_glycosylation_sequon" }, { "start_pos": 794, "end_pos": 796, "annotation": "n_glycosylation_sequon" }, { "start_pos": 890, "end_pos": 892, "annotation": 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"id": "A0A287BLW3", "url": "https://www.uniprot.org/uniprotkb/A0A287BLW3#function" }, { "database": "UniProtKB", "id": "ARBA00056468", "url": "https://www.uniprot.org/uniprotkb/ARBA00056468#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BLW3", "url": "https://www.uniprot.org/uniprotkb/A0A287BLW3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CARD10", "url": "https://www.uniprot.org/uniprotkb/A0A287BLW3", "locus": { "chromosome": "5", "start_pos": 10316720, "end_pos": 10284139, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025260", "url": "https://www.ensembl.org/id/ENSSSCG00000025260" } ] } } ], "crossref": [ { "id": "A0A287BLW3", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BLW3", "database": "AlphaFoldDB", 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}, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057074.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057074.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 33, "start_aa": "Thr", "end_pos": 33, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr33", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu 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76987552, "end_pos": 76987196, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058333.1", "url": "https://www.ensembl.org/id/ENSSSCT00000058333.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057458.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057458.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM12", "url": "https://www.uniprot.org/uniprotkb/A0A287BM12" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "rRNA binding", "id": "GO:0019843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019843", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM12", "url": "https://www.uniprot.org/uniprotkb/A0A287BM12" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM12", "url": "https://www.uniprot.org/uniprotkb/A0A287BM12" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cytoplasmic 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"AF-A0A287BM12-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 119, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BM12-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BM12" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BM12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BM12" }, { "id": "PF00347", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00347" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Large ribosomal subunit protein uL6 alpha-beta", "eco_id": "ECO_0000259", "start_pos": 13, "end_pos": 86, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], 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"table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BM17-1", "uniprot_ac": "A0A287BM17", "uniprot_id": "A0A287BM17_PIG", "mass": { "chemical_mass": 46893.0, "monoisotopic_mass": 46893.0 }, "refseq": { "ac": "XP_020939229", "name": "protein ABHD8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939229" }, "gene_names": [ { "name": "ABHD8", "type": "recommended", "evidence": [ { "id": "A0A287BM17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BM17" } ] }, { "name": "ABHD8", "type": "synonym", "evidence": [ { "id": "XP_020939229", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939229" } ] } ], "protein_names": [ { "name": "Protein ABHD8", "type": 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Promotes NLRP3 degradation through the chaperone-mediated autophagy (CMA) pathway, hence attenuating inflammasome activation and IL1B secretion. Acts by recruiting palmitoyltransferase ZDHHC12 to NLRP3, facilitating NLRP3 palmitoylation and subsequent degradation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM17", "url": "https://www.uniprot.org/uniprotkb/A0A287BM17#function" }, { "database": "UniProtKB", "id": "ARBA00093370", "url": "https://www.uniprot.org/uniprotkb/ARBA00093370#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BM17", "url": "https://www.uniprot.org/uniprotkb/A0A287BM17" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ABHD8", "url": "https://www.uniprot.org/uniprotkb/A0A287BM17", "locus": { "chromosome": "2", "start_pos": 60388983, "end_pos": 60380705, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031877", "url": "https://www.ensembl.org/id/ENSSSCG00000031877" } ] } } ], "crossref": [ { "id": "ENSSSCG00000031877", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031877", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110259326", "url": "https://www.ncbi.nlm.nih.gov/gene/110259326", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000639", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000639", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110259326", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259326", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VHCQRRI", "url": "https://omabrowser.org/oma/group/VHCQRRI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BM17", "url": "https://www.orthodb.org/?gene=A0A287BM17", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR42886", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42886", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42886:SF83", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42886:SF83", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020939229", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939229", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BM17", "url": "https://www.uniprot.org/uniprotkb/A0A287BM17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BM17-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BM17-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLTGVTDGIFCCLLGAPPNAVGPLESVESSDGYTFVEVKPGRVLRVKHAGPAPAPTPSPPLSDTAQGDQTGLVRCQRRITVYRNGRLLVENLGRAPRADLLHGQNGSGEPPAALEVELADPAGSDGRSGTGSAGSGSGGRRRRARRPKRTIHIDCEKRITSCKGAQADVVLFFIHGVGGSLAIWKEQLDFFVRLGYEVVAPDLAGHGASSAPQVAAAYTFYALAEDMRAIFKRYAKKRNVLIGHSYGVSFCTFLAHEYPDLVHKVIMINGGGPTALEPSFCSIFNMPTCVLHCLSPCLAWSFLKAGFARQGAKEKQLLKEGNAFNVSSFVLRAMMSGQYWPEGDEVYHAELTVPVLLVHGMHDKFVPVEEDQRMAEILLLAFLKLIDEGSHMVMLECPETVNTLLHEFLLWEPEPSPKALPEPLPAPLEEKK", "length": 432, "header": "tr|A0A287BM17-1|A0A287BM17_PIG Isoform 1 of Protein ABHD8 OS=Sus scrofa OX=9823 GN=ABHD8 PE=3 SV=1 CANONICAL=A0A287BM17-1" }, "isoforms": [ { "isoform_ac": "A0A287BM17-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BM17/entry#A0A287BM17-1", "sequence": { "sequence": "MLTGVTDGIFCCLLGAPPNAVGPLESVESSDGYTFVEVKPGRVLRVKHAGPAPAPTPSPPLSDTAQGDQTGLVRCQRRITVYRNGRLLVENLGRAPRADLLHGQNGSGEPPAALEVELADPAGSDGRSGTGSAGSGSGGRRRRARRPKRTIHIDCEKRITSCKGAQADVVLFFIHGVGGSLAIWKEQLDFFVRLGYEVVAPDLAGHGASSAPQVAAAYTFYALAEDMRAIFKRYAKKRNVLIGHSYGVSFCTFLAHEYPDLVHKVIMINGGGPTALEPSFCSIFNMPTCVLHCLSPCLAWSFLKAGFARQGAKEKQLLKEGNAFNVSSFVLRAMMSGQYWPEGDEVYHAELTVPVLLVHGMHDKFVPVEEDQRMAEILLLAFLKLIDEGSHMVMLECPETVNTLLHEFLLWEPEPSPKALPEPLPAPLEEKK", "length": 432, "header": "tr|A0A287BM17-1|A0A287BM17_PIG Isoform 1 of Protein ABHD8 OS=Sus scrofa OX=9823 GN=ABHD8 PE=3 SV=1 CANONICAL=A0A287BM17-1" }, "locus": { "chromosome": "2", "start_pos": 60388453, "end_pos": 60382062, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043193.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043193.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057463.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057463.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 274, "start_aa": "Thr", "end_pos": 274, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr274", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 56, "start_aa": "Thr", "end_pos": 56, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr56", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM17", "url": "https://www.uniprot.org/uniprotkb/A0A287BM17" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110259326", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259326", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AIY3-1", "protein_name": "Protein ABHD8", "gene_name": "Abhd8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMSLKLDSVLTREGQRTGKGKGHTMLTGVTDGFFCCLLGTPPNAVRPLESVESSDGYTFVEVKPGRVLRVKHACPAPIPSPPPPPPEDNPGVKTGLVRCQRRITVYRNGRLVVENLGRAPRADLQGRSGSGDPPGSLEVELAEPAGGDTRATPGSGRRRRPRRPKRTIHIDCEQRITSCKGAQADVVLFFIHGVGGSLAIWKEQLDFFVRLGYEVVAPDLAGHGASSAPQVAAAYTFYALAEDMRAIFTRYAKKRNVLIGHSYGVSFCTFLAHEYPDLVHKVIMINGGGPTALEPSLCSIFNMPTCVLHCLSPCLAWSFLKAGFARQGAKEKQLLKEGNAFNVSSFVLRAMMSGQYWPEGDEVYHAELTVPVLLVHGMHDKFVPVEEDQRMAEILLLAFLKLIEEGSHMVMLECPETVNTLLHEFLLWEPEPEAEPKLEPKSKPQPLQLQSDPAPGEEK", "length": 459 }, "evidence": [ { "id": "A0A287BM17", "url": "https://omabrowser.org/oma/group/A0A287BM17/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V1AL80-1", "protein_name": "Protein ABHD8", "gene_name": "ABHD8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLNSITEGFLCCLMGKTTNAVGPLDSVESSNGYSFLEVKPGRILRVRHSAPSRPPAEPAEEPGAAERGTVHCKRKITLYRNGQLVIENLGDAVRSEILHCSNSTAEPSSTVELELSELAGQAPAQGSAGTPGCSTPGCGARDAAGGKRRKRKPKKVINIDCKKQITSCKGTHGDVVLFFIHGVGGSLDIWKEQLDFFTKLGYEVVAPDLAGHGCSSAPQIAAAYTFYALAEDMRAVFKRYAKKRNILIGHSYGVSFCTFLAHEYPDLVHKVIMINGGGPTALEPSLCSIFNMPTCVLHCLSPCLAWSFLKAGFARQGAKEKQLLKEGNAFNVSSFVLRAMMSGQYWPEGDEVYHAELAVPVLLVHGMHDKFVPVEEDQRMAEILLIAFLKVIDEGSHMVMMECPETVNTLLHEFVLWEPETPAGDGQGEKK", "length": 431 }, "evidence": [ { "id": "A0A287BM17", "url": "https://omabrowser.org/oma/group/A0A287BM17/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q17QP1-1", "protein_name": "Protein ABHD8", "gene_name": "ABHD8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLTGVTDGIFCCLLGAPPNAVGPLESVESSDGYTFVEVKPGRVLRVKHAGPAPAPTPPPPLSDAAQGDQSGLVRCQRRITVYRNGRLLVENLGRAPRADLLHGQNGSGEPPAALEVELADPAGSDGRSVPGSAGSGSGGRRRRARRPKRTIHIDCEKRITSCKGAQADVVLFFIHGVGGSLAIWKEQLDFFVRLGYEVVAPDLAGHGASSAPQVAAAYTFYALAEDMRAIFKRYAKKRNVLIGHSYGVSFCTFLAHEYPDLVHKVIMINGGGPTALEPSLCSVFNMPTCVLHCLSPCLAWSFLKAGFARQGAKEKQLLKEGNAFNVSSFVLRAMMSGQYWPEGDEVYHAELTVPVLLVHGMHDKFVPVEEDQRMAEILLLAFLKLIDEGSHMVMLECPETVNTLLHEFLLWEPEPSPKALPEPLPAPPEEKK", "length": 432 }, "evidence": [ { "id": "A0A287BM17", "url": "https://omabrowser.org/oma/group/A0A287BM17/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8R0P8-1", "protein_name": "Protein ABHD8", "gene_name": "Abhd8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSEHTMLTGVTDGFFCCLLGTPPNAVRPLESVESSDGYTFVEVKPGRVLRVKHAGPAPIPTPPPPPPEDDPGVKTGLVRCQRRITVYRNGRLVVENLGRAPRADLQGRSGSGDPPAALEVELAEPAGGDTRANPGSGRRRRPRRPKRTIHIDCEQRITSCKGAQADVVLFFIHGVGGSLAIWKEQLDFFVRLGYEVVAPDLAGHGASSAPQVAAAYTFYALAEDMRAIFTRYAKKRNVLIGHSYGVSFCTFLAHEYPDLVHKVIMINGGGPTALEPSLCSIFNMPTCVLHCLSPCLAWSFLKAGFARQGAKEKQLLKEGNAFNVSSFVLRAMMSGQYWPEGDEVYHAELTVPVLLVHGMHDKFVPVEEDQRMAEILLLAFLKLIEEGSHMVMLECPETVNTLLHEFLLWEPEPEAEPKLEPKPKPQLLQPEPAPGEEK", "length": 439 }, "evidence": [ { "id": "A0A287BM17", "url": "https://omabrowser.org/oma/group/A0A287BM17/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96I13-1", "protein_name": "Protein ABHD8", "gene_name": "ABHD8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLTGVTDGIFCCLLGTPPNAVGPLESVESSDGYTFVEVKPGRVLRVKHAGPAPAAAPPPPSSASSDAAQGDLSGLVRCQRRITVYRNGRLLVENLGRAPRADLLHGQNGSGEPPAALEVELADPAGSDGRLAPGSAGSGSGSGSGGRRRRARRPKRTIHIDCEKRITSCKGAQADVVLFFIHGVGGSLAIWKEQLDFFVRLGYEVVAPDLAGHGASSAPQVAAAYTFYALAEDMRAIFKRYAKKRNVLIGHSYGVSFCTFLAHEYPDLVHKVIMINGGGPTALEPSFCSIFNMPTCVLHCLSPCLAWSFLKAGFARQGAKEKQLLKEGNAFNVSSFVLRAMMSGQYWPEGDEVYHAELTVPVLLVHGMHDKFVPVEEDQRMAEILLLAFLKLIDEGSHMVMLECPETVNTLLHEFLLWEPEPSPKALPEPLPAPPEDKK", "length": 439 }, "evidence": [ { "id": "A0A287BM17", "url": "https://omabrowser.org/oma/group/A0A287BM17/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM17", "url": "https://www.uniprot.org/uniprotkb/A0A287BM17" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "phosphatidic acid biosynthetic process", "id": "GO:0006654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006654", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM17", "url": "https://www.uniprot.org/uniprotkb/A0A287BM17" } ], "pmid": "" }, { "name": "lipid homeostasis", "id": "GO:0055088", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055088", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM17", "url": "https://www.uniprot.org/uniprotkb/A0A287BM17" } ], "pmid": "" }, { "name": "negative regulation of NLRP3 inflammasome complex assembly", "id": "GO:1900226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900226", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM17", "url": "https://www.uniprot.org/uniprotkb/A0A287BM17" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "lysophosphatidic acid acyltransferase activity", "id": "GO:0042171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042171", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM17", "url": "https://www.uniprot.org/uniprotkb/A0A287BM17" } ], "pmid": "" }, { "name": "carboxylic ester hydrolase activity", "id": "GO:0052689", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052689", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM17", "url": "https://www.uniprot.org/uniprotkb/A0A287BM17" } ], "pmid": "" }, { "name": "phospholipase activity", "id": "GO:0004620", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004620", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM17", "url": "https://www.uniprot.org/uniprotkb/A0A287BM17" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" }, { "start_pos": 325, "end_pos": 327, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], 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"name": "MFAP3", "type": "synonym", "evidence": [ { "id": "XP_003134174", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134174" } ] } ], "protein_names": [ { "name": "Microfibril-associated glycoprotein 3", "type": "recommended", "evidence": [ { "id": "A0A287BM27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BM27/entry#names_and_taxonomy" } ] }, { "name": "microfibril-associated glycoprotein 3", "type": "synonym", "evidence": [ { "id": "XP_003134174", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134174" } ] } ], "function": [ { "annotation": "Component of the elastin-associated microfibrils.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM27", "url": "https://www.uniprot.org/uniprotkb/A0A287BM27#function" }, { "database": "UniProtKB", "id": "ARBA00049640", "url": "https://www.uniprot.org/uniprotkb/ARBA00049640#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BM27", "url": "https://www.uniprot.org/uniprotkb/A0A287BM27" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MFAP3", "url": "https://www.uniprot.org/uniprotkb/A0A287BM27", "locus": { "chromosome": "16", "start_pos": 69099975, "end_pos": 69121447, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000034706", "url": "https://www.ensembl.org/id/ENSSSCG00000034706" } ] } } ], "crossref": [ { "id": "ENSSSCG00000034706", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034706", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00096", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00096", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100526255", "url": "https://www.ncbi.nlm.nih.gov/gene/100526255", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100526255", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526255", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KPHCCLF", "url": "https://omabrowser.org/oma/group/KPHCCLF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BM27", "url": "https://www.orthodb.org/?gene=A0A287BM27", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14340", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14340", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14340:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14340:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134174", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134174", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BM27", "url": "https://www.uniprot.org/uniprotkb/A0A287BM27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BM27-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BM27-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKPHCCLFTLVVTVTVPAAFALEDVGFNQMTPLGVNHSSFNASFLPSFEFSTDSHSGDDVIIAREGSSVSIECLLTVDHYEDVYWYNSKGQQLDDRDRGGKWLVSDNFLNITKVAFADRGLYTCFITSPIRASYSVTLRVIFTSGDMSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDPDDMGERIKERPALNAQDGIYVINTEMGRSSSPGGDSDDGSLSEQGQEIAVQVSVHPQSETKSIDTDSQDSSHFSPPDDTGSAGSNSSYKDGAYENCQL", "length": 362, "header": "tr|A0A287BM27-1|A0A287BM27_PIG Isoform 1 of Microfibril-associated glycoprotein 3 OS=Sus scrofa OX=9823 GN=MFAP3 PE=4 SV=1 CANONICAL=A0A287BM27-1" }, "isoforms": [ { "isoform_ac": "A0A287BM27-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BM27/entry#A0A287BM27-1", "sequence": { "sequence": "MKPHCCLFTLVVTVTVPAAFALEDVGFNQMTPLGVNHSSFNASFLPSFEFSTDSHSGDDVIIAREGSSVSIECLLTVDHYEDVYWYNSKGQQLDDRDRGGKWLVSDNFLNITKVAFADRGLYTCFITSPIRASYSVTLRVIFTSGDMSVYYMIVCLIAFTITLILNVTRLCMMSSHLRKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLILNCRAFVEEMFEAVRVDDPDDMGERIKERPALNAQDGIYVINTEMGRSSSPGGDSDDGSLSEQGQEIAVQVSVHPQSETKSIDTDSQDSSHFSPPDDTGSAGSNSSYKDGAYENCQL", "length": 362, "header": "tr|A0A287BM27-1|A0A287BM27_PIG Isoform 1 of Microfibril-associated glycoprotein 3 OS=Sus scrofa OX=9823 GN=MFAP3 PE=4 SV=1 CANONICAL=A0A287BM27-1" }, "locus": { "chromosome": "16", "start_pos": 69108683, "end_pos": 69103281, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061307.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061307.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056344.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056344.1" } ] } } ], 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reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM93", "url": "https://www.uniprot.org/uniprotkb/A0A287BM93" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of chemokine-mediated signaling pathway", "id": "GO:0070100", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070100", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM93", "url": "https://www.uniprot.org/uniprotkb/A0A287BM93" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM93", "url": "https://www.uniprot.org/uniprotkb/A0A287BM93" } ], "pmid": "" }, { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM93", "url": "https://www.uniprot.org/uniprotkb/A0A287BM93" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM93", "url": "https://www.uniprot.org/uniprotkb/A0A287BM93" } ], "pmid": "" }, { "name": "U2-type spliceosomal complex", "id": "GO:0005684", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005684", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM93", "url": "https://www.uniprot.org/uniprotkb/A0A287BM93" } ], "pmid": "" }, { "name": "U2-type precatalytic spliceosome", "id": "GO:0071005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071005", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM93", "url": "https://www.uniprot.org/uniprotkb/A0A287BM93" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM93", "url": "https://www.uniprot.org/uniprotkb/A0A287BM93" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM93", "url": "https://www.uniprot.org/uniprotkb/A0A287BM93" } ], "pmid": "" }, { "name": "ubiquitin-protein transferase activity", "id": "GO:0004842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004842", "evidence": [ { "database": "UniProtKB", "id": "A0A287BM93", "url": "https://www.uniprot.org/uniprotkb/A0A287BM93" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BM93-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 350, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BM93-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BM93" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BM93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BM93" }, { "id": "PS50103", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50103" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C3H1-type", "eco_id": "ECO_0000259", "start_pos": 194, "end_pos": 214, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287BM93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BM93" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 252, "end_pos": 290, "start_aa": "Cys", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], 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"table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BMA8-1", "uniprot_ac": "A0A287BMA8", "uniprot_id": "A0A287BMA8_PIG", "mass": { "chemical_mass": 72555.0, "monoisotopic_mass": 72555.0 }, "refseq": { "ac": "XP_001927648", "name": "WD repeat-containing protein 46 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927648" }, "gene_names": [ { "name": "WDR46", "type": "recommended", "evidence": [ { "id": "A0A287BMA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BMA8" } ] }, { "name": "WDR46", "type": "synonym", "evidence": [ { "id": "XP_001927648", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927648" } ] } ], "protein_names": [ { "name": "WD repeat-containing protein 46", "type": "recommended", "evidence": [ { "id": "A0A287BMA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BMA8/entry#names_and_taxonomy" } ] }, { "name": "WD repeat-containing protein 46 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_001927648", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927648" } ] } ], "function": [ { "annotation": "Scaffold component of the nucleolar structure. Required for localization of DDX21 and NCL to the granular compartment of the nucleolus. Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BMA8", "url": "https://www.uniprot.org/uniprotkb/A0A287BMA8#function" }, { "database": "UniProtKB", "id": "ARBA00059061", "url": "https://www.uniprot.org/uniprotkb/ARBA00059061#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BMA8", "url": "https://www.uniprot.org/uniprotkb/A0A287BMA8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WDR46", "url": "https://www.uniprot.org/uniprotkb/A0A287BMA8", "locus": { "chromosome": "7", "start_pos": 29645130, "end_pos": 29653579, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001504", "url": "https://www.ensembl.org/id/ENSSSCG00000001504" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001504", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001504", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154206", "url": "https://www.ncbi.nlm.nih.gov/gene/100154206", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012952", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012952", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154206", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154206", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EFLPYHW", "url": "https://omabrowser.org/oma/group/EFLPYHW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BMA8", "url": "https://www.orthodb.org/?gene=A0A287BMA8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14085", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14085", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14085:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14085:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08149", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08149", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001927648", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927648", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BMA8", "url": "https://www.uniprot.org/uniprotkb/A0A287BMA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BMA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BMA8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPRGLRTWGGADWMRAGRLPGVFNPTVGQLRGVCTCVAVRVGLMETAPKPGSDVPPKKDRLQAKRKKPRRYWEEETAPTAAGASPGPPRKQKKNREARPQKPKNAPIQKKSRFPKKPQVPKKSQEWRSPGPQRSLSGAQDPFAGPAPVPVEVVRKFRRIDKSKKLPRSKSKAQSRLDAAEAEEEEISVKAARSELLLAEEPGFLEGEDGEDTARIRQADIAEAVDIASAAKHFDLNLRQFGPYRLNYSRTGRHLALGGRRGHVAALDWVTKKLMCEINVMEAVRDIRFLHSEALLAVAQNRWLHIYDNQGIELHCVRRCDRITRLEFLPFHFLLATASETGFLTYLDVSVGKIVAALNARAGRLDVMTQNPYNAIVHLGHSNGTVSLWSPAVKEPLAKILCHRGGVRAVAVDPTGTHMATSGLDHQLKIFDLRGTFQPLSARTLPQGAGHLAFSQRGLLAAGLGDVVNVWAGPGGAGAPCLERPYLTHRLTGHVHGLQFCPFEDVLGVGHSGGVTSMLAPGAAEPNFDGLESNPYRSRKQRQEWEVKALLEKVPAELICLDPRALAEVDVVSLEQEKKERIERLGYDPEAKAPFQPKPKQKGRSSTASLVKRKKKVMDEEHRDKVRQSLKQQQQQKQEKAKPTGARPSALDRFVR", "length": 656, "header": "tr|A0A287BMA8-1|A0A287BMA8_PIG Isoform 1 of WD repeat-containing protein 46 OS=Sus scrofa OX=9823 GN=WDR46 PE=4 SV=2 CANONICAL=A0A287BMA8-1" }, "isoforms": [ { "isoform_ac": "A0A287BMA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BMA8/entry#A0A287BMA8-1", "sequence": { "sequence": "MAPRGLRTWGGADWMRAGRLPGVFNPTVGQLRGVCTCVAVRVGLMETAPKPGSDVPPKKDRLQAKRKKPRRYWEEETAPTAAGASPGPPRKQKKNREARPQKPKNAPIQKKSRFPKKPQVPKKSQEWRSPGPQRSLSGAQDPFAGPAPVPVEVVRKFRRIDKSKKLPRSKSKAQSRLDAAEAEEEEISVKAARSELLLAEEPGFLEGEDGEDTARIRQADIAEAVDIASAAKHFDLNLRQFGPYRLNYSRTGRHLALGGRRGHVAALDWVTKKLMCEINVMEAVRDIRFLHSEALLAVAQNRWLHIYDNQGIELHCVRRCDRITRLEFLPFHFLLATASETGFLTYLDVSVGKIVAALNARAGRLDVMTQNPYNAIVHLGHSNGTVSLWSPAVKEPLAKILCHRGGVRAVAVDPTGTHMATSGLDHQLKIFDLRGTFQPLSARTLPQGAGHLAFSQRGLLAAGLGDVVNVWAGPGGAGAPCLERPYLTHRLTGHVHGLQFCPFEDVLGVGHSGGVTSMLAPGAAEPNFDGLESNPYRSRKQRQEWEVKALLEKVPAELICLDPRALAEVDVVSLEQEKKERIERLGYDPEAKAPFQPKPKQKGRSSTASLVKRKKKVMDEEHRDKVRQSLKQQQQQKQEKAKPTGARPSALDRFVR", "length": 656, "header": "tr|A0A287BMA8-1|A0A287BMA8_PIG Isoform 1 of WD repeat-containing protein 46 OS=Sus scrofa OX=9823 GN=WDR46 PE=4 SV=2 CANONICAL=A0A287BMA8-1" }, "locus": { "chromosome": "7", "start_pos": 29653380, "end_pos": 29645307, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038333.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038333.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057553.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057553.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BMA8", "url": "https://www.uniprot.org/uniprotkb/A0A287BMA8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154206", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154206", "resource": "KEGG Pathway" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" } ], "orthologs": [ { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METAPKPGKDVPPKKDKLQTKRKKPRRYWEEETVPTTAGASPGPPRNKKNRELRPQRPKNAYILKKSRISKKPQVPKKPREWKNPESQRGLSGTQDPFPGPAPVPVEVVQKFCRIDKSRKLPHSKAKTRSRLEVAEAEEEETSIKAARSELLLAEEPGFLEGEDGEDTAKICQADIVEAVDIASAAKHFDLNLRQFGPYRLNYSRTGRHLAFGGRRGHVAALDWVTKKLMCEINVMEAVRDIRFLHSEALLAVAQNRWLHIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATASETGFLTYLDVSVGKIVAALNARAGRLDVMSQNPYNAVIHLGHSNGTVSLWSPAMKEPLAKILCHRGGVRAVAVDSTGTYMATSGLDHQLKIFDLRGTYQPLSTRTLPHGAGHLAFSQRGLLVAGMGDVVNIWAGQGKASPPSLEQPYLTHRLSGPVHGLQFCPFEDVLGVGHTGGITSMLVPGAGEPNFDGLESNPYRSRKQRQEWEVKALLEKVPAELICLDPRALAEVDVISLEQGKKEQIERLGYDPQAKAPFQPKPKQKGRSSTASLVKRKRKVMDEEHRDKVRQSLQQQHHKEAKAKPTGARPSALDRFVR", "length": 610 }, "evidence": [ { "id": "A0A287BMA8", "url": "https://omabrowser.org/oma/group/A0A287BMA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P40055-1", "protein_name": "U3 small nucleolar RNA-associated protein 7", "gene_name": "UTP7", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MGHKKNGHRRQIKERENQNKFERSTYTNNAKNNHTQTKDKKLRAGLKKIDEQYKKAVSSAAATDYLLPESNGYLEPENELEKTFKVQQSEIKSSVDVSTANKALDLSLKEFGPYHIKYAKNGTHLLITGRKGHVASMDWRKGQLRAELFLNETCHSATYLQNEQYFAVAQKKYTFIYDHEGTELHRLKQHIEARHLDFLPYHYLLVTAGETGWLKYHDVSTGQLVSELRTKAGPTMAMAQNPWNAVMHLGHSNGTVSLWSPSMPEPLVKLLSARGPVNSIAIDRSGYYMATTGADRSMKIWDIRNFKQLHSVESLPTPGTNVSISDTGLLALSRGPHVTLWKDALKLSGDSKPCFGSMGGNPHRNTPYMSHLFAGNKVENLGFVPFEDLLGVGHQTGITNLIVPGAGEANYDALELNPFETKKQRQEQEVRTLLNKLPADTITLDPNSIGSVDKRSSTIRLNAKDLAQTTMDANNKAKTNSDIPDVKPDVKGKNSGLRSFLRKKTQNVIDERKLRVQKQLDKEKNIRKRNHQIKQGLISEDHKDVIEEALSRFG", "length": 554 }, "evidence": [ { "id": "A0A287BMA8", "url": "https://omabrowser.org/oma/group/A0A287BMA8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q9LPP3-1", "protein_name": "Transducin/WD40 repeat-like superfamily protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEISSEDNNLMEKVLPPVEQESDVELETKVKKYLRGEGANLETLKDKKLKTQLASREKLYGKSAKAAAKIEKWLLPAEAGYLETEGLEKTWRVKQTDIANEVDILSSRNQYDIVLPDFGPYKLDFTASGRHMLAGGRKGHLALLDMMNMSLIKEIQVRETVRDVAFLHNDQFFAAAQKKYAYIYGRDGTELHCLKERGPVARLRFLKNHFLLASVNMSGQLHYQDVTHGGMVASIRTGKGRTDVMEVNPYNSVVGLGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATSGKERKIKIWDLRKFEEVQTIHSFHAKTLSFSQKGLLAAGTGSFVQILGDSSGGSSHNYTRYMNHSMVKGYQIEKVMFRPYEDVIGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLDPSKIGAMRPSRRKEKPSRGEIEAEKEVAIEAAKSTELKNKTKGRNKPSKRTKKKKEMVENAKRTFPEQEHNTAIKKRRIVEDAAAELPTSLKRFARKN", "length": 536 }, "evidence": [ { "id": "A0A287BMA8", "url": "https://omabrowser.org/oma/group/A0A287BMA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9W3K3-1", "protein_name": "BING4 C-terminal domain-containing protein", "gene_name": "Dmel\\CG2260", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTKVTPKGRPKAKTPYKRYFDGQKDTETGDGDLKHVKVFSKNRQNFTGDFISMINKTKKPRPQKAPAKPTKEELEARPKKNPIPKEILDKYSRGEQVQPKGVKTRHFKEQQTRKEVYLEYATEQAARTELLLQETAGQLQADEGETTAEFRQSQIAENVDIQSSAKHFNLNMEFGPYRMRYTKNGRHLLLGGKRGHVAAFDWVTKRLHCEFNAMESVEDVQWLHVPTMYAVAQKSWVYFYDKKGTELHCIKRLNRVNRLDFLPYHFLLAAGNSAGYASWLDVSIGELVGNFNTGLGDIRMLRHNPRNGVLCIGGGRGVVSMWSPKVREPLAKLLCHSTAMSALAVEPKGQYLVTAGLDRAVKVWDIRMLVHDKPLTHFQLRLPANELDVSQRGMLALSQGTYLETYSDLLSGGGSGDGTRLPYIRQRCDAFVHGLRFCPYEDVLGVSTAKGFQSLLVPGSGEPNFDAMEDNPYETSKQRREHEVHALLEKIPPELITLDPQEITGVDAPTLQEKIDAKRKLFHLKAPRINMKSRHKMKGRGGTAKAARNKQIVKDAKRKEFIAEVREAKKNVIKQHTADEVGAKGKAKTKAPRSVLDRFKPKPPKKQKT", "length": 609 }, "evidence": [ { "id": "A0A287BMA8", "url": "https://omabrowser.org/oma/group/A0A287BMA8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Z0H1-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "Wdr46", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METAPKPGRGVPPKRDKPQAKRKKPRRYWEEETTPAAVATSPGPPRKKARTGESRPPRSKSAHIAQKSRFSKKPPISKTAPDWKKPQRTLSGAQDPFPGPVPAPLEEARKFCRIDKSKTLPHSKPKTQSKLEKAEAQEEEASVRAARAELLLAEEPGFLVGEDGEDTAKILQTDIVEAVDIASAAKHFDLNLRQFGPYRLNYSRTGRHLALGGRRGHVAALDWVTKKLMCEINVMEAVRDIHFLHSEALLAVAQNRWLYIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATTSETGFLTYLDVSVGKIVTALNVRAGRLSVMAQNPYNAVIHLGHSNGTVSLWSPAVKEPLAKILCHRGGVRAVAVDSTGTYMATSGLDHQLKIFDLRGTFQPLSSRTLPQGAGHLAFSQRGLLVAGMGDVVNIWAGQGKASPPSLEQPYLTHRLSGHVHGLQFCPFEDVLGVGHSGGFTSMLVPGAAEPNFDGLENNPYRSRKQRQEWEVKALLEKVPAELICLNPRALAEVDVVTLEQQKKERIERLGYDPDAKAAFQPKAKQKGRSSTASLVKRKKKVMDQEHRDKVRQSLEQQQQKKKQDMAMPPGARPSALDRFVRRAREGGLQVDP", "length": 622 }, "evidence": [ { "id": "A0A287BMA8", "url": "https://omabrowser.org/oma/group/A0A287BMA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A287BMA8", "url": "https://www.uniprot.org/uniprotkb/A0A287BMA8" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "A0A287BMA8", "url": "https://www.uniprot.org/uniprotkb/A0A287BMA8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000462", "evidence": [ { "database": "UniProtKB", "id": "A0A287BMA8", "url": "https://www.uniprot.org/uniprotkb/A0A287BMA8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 247, "end_pos": 249, "annotation": "n_glycosylation_sequon" }, { "start_pos": 383, "end_pos": 385, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BMB1-1", "uniprot_ac": "A0A287BMB1", "uniprot_id": "A0A287BMB1_PIG", "mass": { "chemical_mass": 42575.0, "monoisotopic_mass": 42575.0 }, "refseq": {}, "gene_names": [ { "name": "ERICH1", "type": "recommended", "evidence": [ { "id": "A0A287BMB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BMB1" } ] } ], "protein_names": [ { "name": "Glutamate rich 1", "type": "synonym", "evidence": [ { "id": "A0A287BMB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BMB1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BMB1", "url": "https://www.uniprot.org/uniprotkb/A0A287BMB1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ERICH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BMB1", "locus": { "chromosome": "15", "start_pos": 32540893, "end_pos": 32592779, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028195", "url": "https://www.ensembl.org/id/ENSSSCG00000028195" } ] } } ], "crossref": [ { "id": "A0A287BMB1", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BMB1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028195", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028195", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22444", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22444", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22444:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22444:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28319", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28319", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BMB1", "url": "https://www.uniprot.org/uniprotkb/A0A287BMB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BMB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BMB1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAQRRHVFVGKVLKKLYPDVPHGQEKKAPVTPASKNPLEKVAPERLKGGSIRPVSGSDTQVRPARRLYTVSLPPEGWAPPPEPPSFSSPEGSSSSEDTADQDLCEQPKRRRIRKHKSKKKLKNPNIHVEQAELEKQQSLLQEKLQPRHTDGPMISKNKKRKLKKKQQIKRKKAAGLLTGASGVNFMYQPEENSSGQDDMRGSGGEDAPDTEEDGALGTEEDRAPDAEEEERAALEATDAEKERGAEKEGVTDAGEEDIKNTNEKANSILNFLKSTQEIYFFDGASRDSDSAVLMETTEELFQHLESHSMSSSDVFILDHMKTLLLLRDTERLKRALEVFPEHCSLPPDYARVISAFFNYWITHILPLEPSGGFPTGSADPSA", "length": 383, "header": "tr|A0A287BMB1-1|A0A287BMB1_PIG Isoform 1 of Glutamate rich 1 OS=Sus scrofa OX=9823 GN=ERICH1 PE=4 SV=3 CANONICAL=A0A287BMB1-1" }, "isoforms": [ { "isoform_ac": "A0A287BMB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BMB1/entry#A0A287BMB1-1", "sequence": { "sequence": "MAAQRRHVFVGKVLKKLYPDVPHGQEKKAPVTPASKNPLEKVAPERLKGGSIRPVSGSDTQVRPARRLYTVSLPPEGWAPPPEPPSFSSPEGSSSSEDTADQDLCEQPKRRRIRKHKSKKKLKNPNIHVEQAELEKQQSLLQEKLQPRHTDGPMISKNKKRKLKKKQQIKRKKAAGLLTGASGVNFMYQPEENSSGQDDMRGSGGEDAPDTEEDGALGTEEDRAPDAEEEERAALEATDAEKERGAEKEGVTDAGEEDIKNTNEKANSILNFLKSTQEIYFFDGASRDSDSAVLMETTEELFQHLESHSMSSSDVFILDHMKTLLLLRDTERLKRALEVFPEHCSLPPDYARVISAFFNYWITHILPLEPSGGFPTGSADPSA", "length": 383, "header": "tr|A0A287BMB1-1|A0A287BMB1_PIG Isoform 1 of Glutamate rich 1 OS=Sus scrofa OX=9823 GN=ERICH1 PE=4 SV=3 CANONICAL=A0A287BMB1-1" }, "locus": { "chromosome": "15", "start_pos": 32592742, "end_pos": 32541485, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046863.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046863.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057205.3", "url": "https://www.ensembl.org/id/ENSSSCP00000057205.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 32, "start_aa": "Thr", "end_pos": 32, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr32", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith 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CANONICAL=A0A287BME6-1" }, "locus": { "chromosome": "17", "start_pos": 36697981, "end_pos": 36690021, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056408.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056408.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057240.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057240.2" } ] } }, { "isoform_ac": "F1S506-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BME6/entry#F1S506-1", "sequence": { "sequence": "MFQLWKLVFLCGLLTGTSASLLEDLENDLSDAEDKLQPVIDKGLETVEPVLQKLKAELESLQESESWQEAKQKVQEAENLLDKVLSKIFQITEKATGLKISNLHILDAKVKLMADGKGISLNLPITANVSLTLPLLGQVVDLDLNLDLLTSVTIETDAKTGVSTVTLGECASDPASISLTLLDRRRALVNRAVNSVIKVLRKVVSLVVQKEVCPMIQKLVENLGVSLFKNIIDSLPKA", "length": 238, "header": "tr|F1S506-1|A0A287BME6_PIG Computationally mapped isoform of BPI fold containing family A member 2 OS=Sus scrofa OX=9823 GN=BPIFA2 PE=3 SV=1 CANONICAL=A0A287BME6-1" }, "locus": { "chromosome": "17", "start_pos": 36699818, "end_pos": 36690021, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007943.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007943.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007730.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007730.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S506", "url": "https://www.uniprot.org/uniprotkb/F1S506" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6803157", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6803157", "resource": "Reactome", "description": "Antimicrobial peptides" } ], "orthologs": [ { "uniprot_canonical_ac": "F6RMF1-1", "protein_name": "Lipid-binding serum glycoprotein N-terminal domain-containing protein", "gene_name": "LOC112441508", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVQLWKLVLLCGLLAGTSESLLDIRGNDVLRRLISGLERGLGTFDSTIEIIFQNLKTELESRCLNDVVEETQQTENSLEGLISRIFQVVNRLTGVRIRNVQVPDITFEATSENSANVSIPITADVTVSLPLLGEIVKLDLNVDLQTSVSIETDAETGDSRVVVGECPNNPESISLTVLHRRPGLLNDVVDFGVNLVRQLVSSVVQHELCPRIRELLESLDTECIKKLIGEPQVTTQQEI", "length": 239 }, "evidence": [ { "id": "A0A287BME6", "url": 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CANONICAL=A0A287BN31-1" }, "isoforms": [ { "isoform_ac": "A0A287BN31-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN31/entry#A0A287BN31-1", "sequence": { "sequence": "GIQSFPTVWLKAPSQTSSLHITFWCYAKVQLVPPTPAEIPTAIQSLNKSQYAQTGSFKQLTVKEALLNGLLTTEVLMWFSAGEITGKNGIVGYDV", "length": 95, "header": "tr|A0A287BN31-1|A0A287BN31_PIG Isoform 1 of ATP synthase subunit OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287BN31-1" }, "locus": { "chromosome": "6", "start_pos": 88973664, "end_pos": 88972837, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061241.2", "url": "https://www.ensembl.org/id/ENSSSCT00000061241.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057916.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057916.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", 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Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BN31", "url": "https://www.uniprot.org/uniprotkb/A0A287BN31" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial membrane", "id": "GO:0031966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031966", "evidence": [ { "database": "UniProtKB", "id": "A0A287BN31", "url": "https://www.uniprot.org/uniprotkb/A0A287BN31" } ], "pmid": "" }, { "name": "proton-transporting ATP synthase complex", "id": "GO:0045259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045259", "evidence": [ { "database": "UniProtKB", "id": "A0A287BN31", "url": "https://www.uniprot.org/uniprotkb/A0A287BN31" } ], "pmid": "" } ] }, { "name": "Molecular Function", 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"MDRNYATSGFADPPPPPPAPPAAPASAAAQPPAPAWAYEPRAAAAAASSSCSSGSSPSLKASLSYEEGHPSHSETDLLQRQNFAASHQLPGYATTPQPTGLSGIFDTSVNNASTNTKESSVTNFLSAVESRAAQAASSGTTLLPQFRAPSWQTGMHSSAATELFVTGPLPTTGTLPPSALSAYQHPTTFSNRNFATTSPLVLQDSTFNTTSNGILNPHDPLLQIKTSQGTVPTALAFERLGSSAISNCIPPQSSTYRSAQESAPHLLQPQFSLLPSALGGAQQTPQAYGSTLFTNSTASIERALLRECSVIKHHQRPSGTQSIQAQLTGSQHSLHSYLSNASVVNFQETSRQSSLSCSPVGDSTQVSNGGLQQKTSQVSVELAQSYSSAIPSSGYPPSTTKVKSCSTKQPLTSTKTPKPQSIIPPVQTLSYSKPLHNQSSVISGQAQIYSTAQLPSLLSVSQSQNYGLAQPHTVPSIVHSQVYRSSKVEKLPPLYKTLTFSGSSQTITSENPTLSYSNQQEVLSSVTNENYPAQTRDLSSVSQAQSYSSGHSQGLSPVSQSQVSYSSQSQVLSVVSPSESYASGQSLTLTAPSLSYSSASQAQNMPDSSPTQNYISMHSSQNAQTQGSSSPQSQKFLPAVQSSPFASSIHCQTLQNNIPSPDPKSYAERKLDSNVYGSSKQEGDFPMQELQVLQPQVSLESSTQRLSDGEINVQESAYKVSKADDRYSQSIIRSNSHLEDQVVGIALQGSKKEESLVGSVTQVNQQIGQVSNAATLDIKKTTNLMQTPQIRLNTKDLNQQHSLIQKVHEAKAQEQHDQIINTSSQIQIPNHALGHGHQASLPNTQVLLDSACDLQILQQSILQAGLGQVKATLQVQRVQSPQQIVHPFLQMDGHVIQSNGDPSQQQIHPQNSEIMKMDLSESTKPLQQHLATKGHFSETNQHDSKNHFVSLGSICFPEAMLLSDERNILSNVDDILAATAAACGVTPSDFTKSTSNETIPAVEDGDSKSHFQQSLDVGHVTSDFNSIAATVGKPPNINDISLNGNQVTVNLSPVPTLQSKMTLDQQHIETPGQSKPSKLTSPVIGPGHEAQEQSSGPFKKQSATSHESEEDSEVPVDSTLNNRNQEFVSSSRSISGESATSESEFTLGGEDSGVSVTPTRSTLALLAMAQPGEPVSVKVEEENQDLIHFNLQKKKTKGKGQTKEEDNSNQKPLKRPAQGKRQNPRGTDIYLPYTPPSSESCHDGYQHQEKMRQKIKEVEEKQPEVKTGFIASFLDFLKSGPKQQFSTLAVRMPNRTRRPGTQIVRTFCPPPLPKTASVTPAPLVSETGGHSPSEKVDNELKNPEHLSSLSSDEEDPGVCSQDVYKSSSTTLTTLGATSDRKKKAVSEALQVATTSPAANTTGTATTSSTTVGAAKQESLYSTSSTVNSLENINSAEPPNPIELDGLPSDQYAKGQDTVAIEGFTDEENTESGGEGQYRERDEFVVKIEDIETFKEALKTGKEPPAIWKVQKALLQKFVPEIRDGQREFAATNSYLGYFGDAKNKYKRIYVKFIENTNKKEYVRVCSKKPRNKPSQTLRTVQTKPSSSSKTSDPPTPKTTTTKAPSIKPKVKQLKVKAEPPPKKRKKWKEEFSSSQSDSSPEIHSSSSDDEEFNPPAPFVTRFLNTRAMKETFKSYMELLVSIALDPDTMQALEKSNDELLLPHMKKIDSMLNDNRKRLLLNLHLDQSFKNALESFPELTIITRDSKAKSGGSAISKIKMNGKTYNKKTLRTSKTSTKSAQEFAVDPEKIQLYSLYHSLHHYKYHVYLICKDEISSVQKKNEDLGQEEIVQLCMKNH", "length": 1836, "header": "tr|A0A5G2QGQ0-1|A0A287BN43_PIG Computationally mapped isoform of Glutamine and serine rich 1 OS=Sus scrofa OX=9823 GN=QSER1 PE=4 SV=1 CANONICAL=A0A287BN43-1" }, "locus": { "chromosome": "2", "start_pos": 28043164, "end_pos": 27958814, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082695.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082695.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063484.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063484.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1319, "start_aa": "Thr", "end_pos": 1319, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1319", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 171, "start_aa": "Thr", "end_pos": 171, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr171", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 986, "start_aa": "Thr", "end_pos": 986, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr986", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGQ0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGQ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1050, "end_pos": 1052, "annotation": "n_glycosylation_sequon" }, { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1294, "end_pos": 1296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1397, "end_pos": 1399, "annotation": "n_glycosylation_sequon" }, { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" }, { "start_pos": 295, "end_pos": 297, "annotation": "n_glycosylation_sequon" }, { "start_pos": 340, "end_pos": 342, "annotation": "n_glycosylation_sequon" }, { "start_pos": 437, "end_pos": 439, "annotation": "n_glycosylation_sequon" }, { "start_pos": 821, "end_pos": 823, "annotation": "n_glycosylation_sequon" }, { "start_pos": 996, 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15726", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15726", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020948280", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948280", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BN44", "url": "https://www.uniprot.org/uniprotkb/A0A287BN44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN44-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN44-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDGLLEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRAMRGALDEQASHIQVLSDDVCANQRAIVSMCRIMTTAPRQGGLGVVGGKGSFPGAPQERETPSLGIGDSGLLGRDPEDEEDDDEEEKEMPSSATPTSHCERPESPCAGHLGGDGPLVEPLDLPDITLLQLEAEASL", "length": 195, "header": "tr|A0A287BN44-1|A0A287BN44_PIG Isoform 1 of Coiled-coil domain containing 184 OS=Sus scrofa OX=9823 GN=CCDC184 PE=4 SV=1 CANONICAL=A0A287BN44-1" }, "isoforms": [ { "isoform_ac": "A0A287BN44-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN44/entry#A0A287BN44-1", "sequence": { "sequence": "MEDGLLEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRAMRGALDEQASHIQVLSDDVCANQRAIVSMCRIMTTAPRQGGLGVVGGKGSFPGAPQERETPSLGIGDSGLLGRDPEDEEDDDEEEKEMPSSATPTSHCERPESPCAGHLGGDGPLVEPLDLPDITLLQLEAEASL", "length": 195, "header": "tr|A0A287BN44-1|A0A287BN44_PIG Isoform 1 of Coiled-coil domain containing 184 OS=Sus scrofa OX=9823 GN=CCDC184 PE=4 SV=1 CANONICAL=A0A287BN44-1" }, "locus": { "chromosome": "5", "start_pos": 78562284, "end_pos": 78561700, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040975.2", "url": "https://www.ensembl.org/id/ENSSSCT00000040975.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057501.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057501.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 153, "start_aa": "Thr", "end_pos": 153, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr153", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BN44", "url": "https://www.uniprot.org/uniprotkb/A0A287BN44" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110260777", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260777", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3IDJ6-1", "protein_name": "Coiled-coil domain-containing protein 184", "gene_name": "Ccdc184", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEDSLLEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRAMRGALDEQASHIQVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVAAGKGSFPSVPHEPETPSIGIGDGGLLGRDPEEEEDEEEEKAMPSPATPTSHRERSESPCAGLLGEDGPLVEPLDLPDITLLQLEGEVSL", "length": 194 }, "evidence": [ { "id": "A0A287BN44", "url": "https://omabrowser.org/oma/group/A0A287BN44/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q0VC19-1", "protein_name": "Coiled-coil domain-containing protein 184", "gene_name": "CCDC184", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEEGLLEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRAMRGALDEQASHIQVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVVGNKGNFPGARRDPETPSPGIGDSGLLGRDPEDEEDDDEEEKEMPSSATPTSHCELPESPCAGLLGGDGPLVEPLDLPDITLLQLEGEASL", "length": 195 }, "evidence": [ { "id": "A0A287BN44", "url": "https://omabrowser.org/oma/group/A0A287BN44/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4V8F1-1", "protein_name": "Coiled-coil domain-containing protein 184", "gene_name": "Ccdc184", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDSLLEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRAMRGALDEQASHIQVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVAGGKGSFPSVPHEPETPSPGIGDSGLLGRDPDEEDEEEEEEKETASPATPTSHCERSESPGLLGENGPLVEPLDLPDITLLQLEGEASL", "length": 193 }, "evidence": [ { "id": "A0A287BN44", "url": "https://omabrowser.org/oma/group/A0A287BN44/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q52MB2-1", "protein_name": "Coiled-coil domain-containing protein 184", "gene_name": "CCDC184", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDGLLEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRAMRGALDEQASHIQVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVVGGKGSFQSDPQEPETPSPGIGDSGLLGRDPEDEEEEEEEKEMPSPATPSSHCERPESPCAGLLGGDGPLVEPLDMPDITLLQLEGEASL", "length": 194 }, "evidence": [ { "id": "A0A287BN44", "url": "https://omabrowser.org/oma/group/A0A287BN44/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BMK5-1", "protein_name": "Coiled-coil domain-containing protein 184", "gene_name": "Ccdc184", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSLLEIMTKDGGDMPAPLEVSTVPAVGDVISGEYNGGMKELMEHLKAQLQALFEDVRAMRGALDEQASHIQVLSDDVCANQRAIVSMCQIMTTAPRQGGLGVAGGKGSFPSVPHEPETPSPGIEDSGLLGRDPDEDEDEEEKETPNPATPTSHCELSESPGLLGEDGPLVEPPDLPDITLLQLEGEASL", "length": 191 }, "evidence": [ { "id": "A0A287BN44", "url": "https://omabrowser.org/oma/group/A0A287BN44/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287BN44", "url": "https://www.uniprot.org/uniprotkb/A0A287BN44" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 153 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BN52-1", "uniprot_ac": "A0A287BN52", "uniprot_id": "A0A287BN52_PIG", "mass": { "chemical_mass": 50969.0, "monoisotopic_mass": 50969.0 }, "refseq": {}, "gene_names": [ { "name": "CASP16", "type": "recommended", "evidence": [ { "id": "A0A287BN52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BN52" } ] } ], "protein_names": [ { "name": "Caspase 16", "type": "synonym", "evidence": [ { "id": "A0A287BN52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BN52/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": 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"IPR011600", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011600", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015917", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015917", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627836", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627836", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BN52", "url": "https://www.orthodb.org/?gene=A0A287BN52", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22576", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22576", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22576:SF41", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22576:SF41", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00656", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00656", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BN52", "url": "https://www.uniprot.org/uniprotkb/A0A287BN52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN52-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN52-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFLVAGTLRAASQMADARESLGRKGKYRVQGPRVALTLSSPEVSASTVAILEGVFRTLGFTSCQRREASAQGFRGELARFREQLDAHRGPVGCVLVALVAPREQLRQAQQLVWELSRCEALWGRPKVFLLLSGAPAAAPEPGTFLTELGELCGRCPRQPLLQLLAEVFCRTAEESPGATYCPVLRSSLRGALCLGDEELWGPEPEASPCAQYDLSGARAALLLAVIQDRPGALRDVEALGDLCQALGFETTLKMDPTAQVFQEEVARFREQLDTRRGPVSCALVALMAHGGPKGQLLGADGQEVQPEVLVQELSCCGALGGRPKIFLVQACRGGHRDAGVGPTALPWFWRWLRAPPAIHSRADVLQIYADVQGSLSRDPTAGRSNPADLLTVYAAAEGCVAYRDERGSDFIQTLVEVLRADPGRDLLELMTEVNRQVCELDVLGPDCEERRKACLEICSSLRRRLCLQA", "length": 470, "header": "tr|A0A287BN52-1|A0A287BN52_PIG Isoform 1 of Caspase 16 OS=Sus scrofa OX=9823 GN=CASP16 PE=3 SV=2 CANONICAL=A0A287BN52-1" }, "isoforms": [ { "isoform_ac": "A0A287BN52-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN52/entry#A0A287BN52-1", "sequence": { "sequence": "MAFLVAGTLRAASQMADARESLGRKGKYRVQGPRVALTLSSPEVSASTVAILEGVFRTLGFTSCQRREASAQGFRGELARFREQLDAHRGPVGCVLVALVAPREQLRQAQQLVWELSRCEALWGRPKVFLLLSGAPAAAPEPGTFLTELGELCGRCPRQPLLQLLAEVFCRTAEESPGATYCPVLRSSLRGALCLGDEELWGPEPEASPCAQYDLSGARAALLLAVIQDRPGALRDVEALGDLCQALGFETTLKMDPTAQVFQEEVARFREQLDTRRGPVSCALVALMAHGGPKGQLLGADGQEVQPEVLVQELSCCGALGGRPKIFLVQACRGGHRDAGVGPTALPWFWRWLRAPPAIHSRADVLQIYADVQGSLSRDPTAGRSNPADLLTVYAAAEGCVAYRDERGSDFIQTLVEVLRADPGRDLLELMTEVNRQVCELDVLGPDCEERRKACLEICSSLRRRLCLQA", "length": 470, "header": "tr|A0A287BN52-1|A0A287BN52_PIG Isoform 1 of Caspase 16 OS=Sus scrofa OX=9823 GN=CASP16 PE=3 SV=2 CANONICAL=A0A287BN52-1" }, "locus": { "chromosome": "3", "start_pos": 39072541, "end_pos": 39067337, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061477.2", "url": "https://www.ensembl.org/id/ENSSSCT00000061477.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058049.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058049.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 344, "start_aa": "Thr", "end_pos": 344, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr344", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BN52", "url": "https://www.uniprot.org/uniprotkb/A0A287BN52" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627836", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627836", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A287BN52", "url": "https://www.uniprot.org/uniprotkb/A0A287BN52" } ], 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"MFSRRSHGDVKKSTQKVLDPKKDVLTRLKHLRALLDNVDASDLKQFFETNYSQIYFIFYENFITLENSLKLKGNNKSQREELDSILFLFEKILQFLPERIFFRWHYQSIGSTLKKLLHTGNSIKIRCEGIRLFLLWLQALQTNCAEEQVLIFACLVPGFPAIMSSRGPCTLETLLSPSPGVADAKVYPEEITPLVPAMSGEKIAEDQTCFFLQLLLKYMVIQAASLEWKHKENQETGFKFLFTLFRKYYLPHLFPSFTKLTNIYKPVLDVPHLRPKPVYITTTRDNENIYSTKIPYMAARVVFIKWIVTFFLEKKYLSTAQNTKNGVDVLPKIIQTVGGGAAVQDRAPELDSGAAEPDRSHSNSSTLSDRRLSSSSLCSVEEEHRAVYEMVQRILLSTRGYVNFVNEVFRQAFLLPSCDIAVTRKVVQVYRKWILQEKPVFMEEPDIKEVAQEDAEKLGFSETDAKETSSESSGHKRSSSWGRTYSFTSAVSRGCVTEEENQNVKAGAQAMLQVFLTNAANVFLLEPCAEVPMLLKEQVDACKAVLIIFRRMIMELTMNKKTWEQMLQILLRITEAVMQKPKDKQVKDLFAQSLAGLLFRTLMVAWIRANLCVPISRELWDDFLGVLSSRTEWEELINEWASIMDSLTAVLARTVYGVEMTNLPLDKLSEQKEKKQRGKGCVPDSQKGTTVGRSFSLSWRSHPEMTEPMRFRSATTSGAPGVEKARNIVRQKATEVEECPQQESAPAAEPGAQAADEQQRMVRSSSSPDVTEPLGADAPPGQNVGDTQSVSSSEPRPVQESKGHTKKEHEGITISVRRSSSPAELDLKDDLPQTQGKCRERQKSDSVGSDTGLGYGTDTELSLSPWQTYEEDPDLNTPTDAVTDSDARHWLQLSPTDASHVTDSSECLADDCSIIAGGTLTGWHPDSAAVLWRRVLGILGDVNNIQSPKIHARVFGYLYELWYKLAKIRDNLAISLDNQSSPSPPALIPPLRMFASWLFKATTLPNEYKEGKLQAYKLICAMMTRRQDVLPNSDFLVHFYLVMHLGLTSEDQDILNTIVRHCPPRFFSLGLPGFSMLMGDFITAAARVLSADMLAAPRSEALTILGSLVCFPNTYREVPLLQSLPDVTEVVTGTDDVKHYLISILLKNATEEPNEHARCIAICSLGVWICEELAQCMSHPQLKEAVNVIGVTLKFPNKVVAQVACDVLQLLVSYWEKLQIFEPSLPRKIAEILVATIAFLLPSAEYSSVETDKKLIVSLLLCLLDWCMALPLNALLHPVATAALEEQASSRAPLLDYVYRVLHCCVCGSSTYTQQSHYTLTLADLSSTDYDPFLPLANVKSSEPAQHHSSAELGNLLTVEEERRRRSLELIPLTARMVMAHLVNHLGHFPLCGGPAALHSLVSENHDNAHADAAELSPEVFRSPNLQLFVFNDSTLISCLQTPAQGPADGSPAGALSDVRVIVRDISGKYSWDGKVLYGPLAGCPAPQGRCPSSLVSGWPRPPSGPQKDLSQTDEGEDVLDKLLENIGHTSPECLLPSQLNLNEPSPPPCGMSRDQEKEIIQAILRQSAQEDAYVQRCHSDPALRVASQEQPFPVEPRGAFYFCRLLLDDLGMNSWDRRKNFHLLKKNSKLLRELKHLDSRQCRETHKIAVFYIAEGQEDKCSILSNERGSQAYEDFVAGLGWEVDLSTHCGFMGGLQRNGTTGQTAPYYATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHSRDYRRGIIPTAFGDVSIIIYPMKNHMFFIAITKKPEVPFFGPLFDGAIVSGKLLPSLICATCINASRAVKCLIPLYQSFYEERALYLEAIIQNHREVMTFEDFAAQVFSPSPSYSVTGTD", "length": 1873, "header": "tr|A0A287BN99-1|A0A287BN99_PIG Isoform 1 of Ral GTPase activating protein catalytic subunit alpha 2 OS=Sus scrofa OX=9823 GN=RALGAPA2 PE=4 SV=1 CANONICAL=A0A287BN99-1" }, "isoforms": [ { "isoform_ac": "A0A287BN99-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN99/entry#A0A287BN99-1", "sequence": { "sequence": "MFSRRSHGDVKKSTQKVLDPKKDVLTRLKHLRALLDNVDASDLKQFFETNYSQIYFIFYENFITLENSLKLKGNNKSQREELDSILFLFEKILQFLPERIFFRWHYQSIGSTLKKLLHTGNSIKIRCEGIRLFLLWLQALQTNCAEEQVLIFACLVPGFPAIMSSRGPCTLETLLSPSPGVADAKVYPEEITPLVPAMSGEKIAEDQTCFFLQLLLKYMVIQAASLEWKHKENQETGFKFLFTLFRKYYLPHLFPSFTKLTNIYKPVLDVPHLRPKPVYITTTRDNENIYSTKIPYMAARVVFIKWIVTFFLEKKYLSTAQNTKNGVDVLPKIIQTVGGGAAVQDRAPELDSGAAEPDRSHSNSSTLSDRRLSSSSLCSVEEEHRAVYEMVQRILLSTRGYVNFVNEVFRQAFLLPSCDIAVTRKVVQVYRKWILQEKPVFMEEPDIKEVAQEDAEKLGFSETDAKETSSESSGHKRSSSWGRTYSFTSAVSRGCVTEEENQNVKAGAQAMLQVFLTNAANVFLLEPCAEVPMLLKEQVDACKAVLIIFRRMIMELTMNKKTWEQMLQILLRITEAVMQKPKDKQVKDLFAQSLAGLLFRTLMVAWIRANLCVPISRELWDDFLGVLSSRTEWEELINEWASIMDSLTAVLARTVYGVEMTNLPLDKLSEQKEKKQRGKGCVPDSQKGTTVGRSFSLSWRSHPEMTEPMRFRSATTSGAPGVEKARNIVRQKATEVEECPQQESAPAAEPGAQAADEQQRMVRSSSSPDVTEPLGADAPPGQNVGDTQSVSSSEPRPVQESKGHTKKEHEGITISVRRSSSPAELDLKDDLPQTQGKCRERQKSDSVGSDTGLGYGTDTELSLSPWQTYEEDPDLNTPTDAVTDSDARHWLQLSPTDASHVTDSSECLADDCSIIAGGTLTGWHPDSAAVLWRRVLGILGDVNNIQSPKIHARVFGYLYELWYKLAKIRDNLAISLDNQSSPSPPALIPPLRMFASWLFKATTLPNEYKEGKLQAYKLICAMMTRRQDVLPNSDFLVHFYLVMHLGLTSEDQDILNTIVRHCPPRFFSLGLPGFSMLMGDFITAAARVLSADMLAAPRSEALTILGSLVCFPNTYREVPLLQSLPDVTEVVTGTDDVKHYLISILLKNATEEPNEHARCIAICSLGVWICEELAQCMSHPQLKEAVNVIGVTLKFPNKVVAQVACDVLQLLVSYWEKLQIFEPSLPRKIAEILVATIAFLLPSAEYSSVETDKKLIVSLLLCLLDWCMALPLNALLHPVATAALEEQASSRAPLLDYVYRVLHCCVCGSSTYTQQSHYTLTLADLSSTDYDPFLPLANVKSSEPAQHHSSAELGNLLTVEEERRRRSLELIPLTARMVMAHLVNHLGHFPLCGGPAALHSLVSENHDNAHADAAELSPEVFRSPNLQLFVFNDSTLISCLQTPAQGPADGSPAGALSDVRVIVRDISGKYSWDGKVLYGPLAGCPAPQGRCPSSLVSGWPRPPSGPQKDLSQTDEGEDVLDKLLENIGHTSPECLLPSQLNLNEPSPPPCGMSRDQEKEIIQAILRQSAQEDAYVQRCHSDPALRVASQEQPFPVEPRGAFYFCRLLLDDLGMNSWDRRKNFHLLKKNSKLLRELKHLDSRQCRETHKIAVFYIAEGQEDKCSILSNERGSQAYEDFVAGLGWEVDLSTHCGFMGGLQRNGTTGQTAPYYATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHSRDYRRGIIPTAFGDVSIIIYPMKNHMFFIAITKKPEVPFFGPLFDGAIVSGKLLPSLICATCINASRAVKCLIPLYQSFYEERALYLEAIIQNHREVMTFEDFAAQVFSPSPSYSVTGTD", "length": 1873, "header": "tr|A0A287BN99-1|A0A287BN99_PIG Isoform 1 of Ral GTPase activating protein catalytic subunit alpha 2 OS=Sus scrofa OX=9823 GN=RALGAPA2 PE=4 SV=1 CANONICAL=A0A287BN99-1" }, "locus": { "chromosome": "17", "start_pos": 28679100, "end_pos": 28414051, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057736.2", "url": "https://www.ensembl.org/id/ENSSSCT00000057736.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057637.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057637.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BN99", "url": "https://www.uniprot.org/uniprotkb/A0A287BN99" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A2R8QI48-1", "protein_name": "Ral GTPase-activating protein subunit alpha-2 isoform X1", "gene_name": "ralgapa2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFTRRVYGDVKKSTQKVLDPKKDVFTRLKHLRALLDIIDRNELKAFFETNCSQIYFIFYENFITLESNLKQKGNKSQREELDSILFIFEKILQLLPEKINSRWQYHSIGSILKKLLHTGNSFKIRCEGMRLFLLWLQALQNHCAEEQLLIFACLIPGFPAVPSSRGPCTLDTIIYNPFSNPPDAKIVPEEITPLVPAVPGEKVADDHTCSVLQIVLKVIVLQASSLDWKNKENQDTGFRFLFSLFKKYYLPHLFPTFSKHTNLYKPQLDLPIHRPKPLYVPVTRNNESTYCTRDQYLAPRVAFITWLVNFFLEKKYVNSTTSNSKNGGEVLPKLIQTVTAGSISQEKSTDLEPNGPVEQEKNHSNSSTLSDRRGSNSSLCSIEEEHRGVYDMVQAILLSTRDNVNFVNEVFHQAFLLPSCEASATRKVIKVYRKWILQEKPAFMAEPETTNQEEDTEEEQLVTETDNAHIQALETHGHKRSSSWGRTYSFSSAISRGCLTEELNLEVKAGIQSALQVFLTNSANVFLLEPCQDVPKLLENQLEVCRAVLSVYRHIIMEQNMNRQTWEQLLQVLLRITEAVMKRPQENQKKDTFAHSLASILFKTIFVAWVRANLTVFISRELWDELLAVLSSLSHWEELVFEWASIMDSLTAVLARHVYGLDLHNLPLDKLSEQKEKKQRGRGVMADSHKVSEAGRSFSLSWKNSGDQVGAQEPMRFRSATTTGTPAVEKARNNVRQKAKRSQSISNCVHLCEALPATKSVPMLLHTVSSFLPGISHNSHCSHRLSDVEECQLSECEMGDGDSPLPRSSSTSDITQQINDTFTGQRKDESMDLVRSSVSESSSAGTRESDAPVILIERSNSPADLDYPAEGAPAFLKMKLREKSESVSSETSNGYLNEAEVGLLSWHTLEEEPDSPSTQDVSMSMSVTADTVSQRSLLLSHTEALAGSPHFPPVSPALLVPHGCCEGPQLLEDAMNMPQHLDSSEFLADDISIIAGGSLTGWHADSAFVLWRRILGILGDVNSIRCARIHAKVFSYLYELWHKLAKIRDNLGIRVDSDTAMVKPLFIPPLRMLASWLFKATMLPSEFKAGKLQAYKLICEMMTKHQDVLPNSDFLVHLYHVMHKGFTSDDQDVLNTMIRWCSPRFFFLGLPGFTMLVGDFITAAARILNTDSFEAPRVEAQAVLGSLVCFPNLYQQIPSLQSVPGSEDILVGKEDMKDYLVNILLKTARSETCEGARCVAICGLGLWVCEELRQTETHHQVKDAINVLGVTLKFGNKVVANVACDIFQLLISHWQHLQRLEPSLPKRIIEIFVATVAFLLPSAEHSTVEADKKLMVSLLLCLLDWCMSVPLSILLEPITMPVLDDPTSQKAPLLDYIYRVLHTCVSGSNLHTQQSHYLLSLADLSTDYEPFLMLGNVKSFEPPAIHNAMGDFGNLLTVAEEKKRRSMELIPLTARMVMTHLVNHLGHHPLSGGPALLNSLISENHDNPYVESSELSSEVFKSPNLQLFVFNDSTLISYLQIPSDNSNTAPLSANPRDHSSEVRIIIRDISGKYSWDSGVLFRTLDGTGVTSSDSREQSSHEAARLEKRSSVRFSKCSSELDVEDGVDVLDQLLEDLGHSSPECLPEPQLRLTQPPSPPMGMNLEIEGLIMEAVHRQSKQEEEELMRRQIEDPSVRAERQKEPTHQEPKSPFYLCRLLLNDLGMNSWDRRKSFHLLKKNSKLLRELKNLDSRQCRETHKIAVFYIGEGQEDKYSILSNTQGSQVYEDFVSGLGWEVNLATHCGFMGGLQRNGSTGSTAPYYATSNVEVIFHVSTRMPSDSDDSITKKLRHLGNDEVHIVWSEHTRDYRRGIIPTDFGDVLVIIYPMKNHMFFVQIMKKPQVPFFGPLFDGAIVTGELLPSLVRATCINASRAVKSRLPLYQSFYEERALYLEAIIQNHKENMTFEDFAAQVFSPSPSYWPSGGAGSLSCSTSADLSVSVMTNDSGDQVSPTIPRATKNRVSGKLRRSASAISKSSN", "length": 2015 }, "evidence": [ { "id": "A0A287BN99", "url": "https://omabrowser.org/oma/group/A0A287BN99/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8C2N4S5-1", "protein_name": "Ral GTPase-activating protein subunit alpha-2 isoform X5", "gene_name": "Ralgapa2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFSRRSHGDVKKSTQKVLDPKKDVLTRLKHLRALLDNVDASDLKQFFETNYSQIYFIFYENFITLENSLKLKGNNKSQREELDSILFLFEKILQFLPERIFFRWHYQSIGSTLKKLLHTGNSIKIRCEGIRLFLLWLQALQTNCAEEQVLIFACLVPGFPAVLSSRGPCTLETLINPSPSVVDAKIYPEEITPLLPAISGEKIAEDQTCFFLQILLKYMVIQAASLEWKNKENQDTGFKFLFTLFRKYYLPHLFPSFTKLTNIYKPVLEIPHLRPKPVYVTITRDNETIYSTKIPYMAARVVFIKWIVTFFLEKKYLTATQNTKNGVDVLPKIIQTVGGGAAQEKVPGLDGDGSTEQDKSHSNSSTLSDRRLSNSSLCSIEEEHRTVYEMVQQILLSTRGYVNFVNEVFRQAFLLPSCEISVTRKVVQVYRKWILQNKPVFMEEPDKKDVAQEDADKLGISETDSKEASSESSGHKRSSSWGRTYSFTSAMSRGCVTEEDNTNVKAGAQAMLQVFLTNAANVFLLEPCAEVPMLLREQVDACKAVLIIFRRMIMELTMNQKTWEQMLQILLRITEAVMQKPKDKHVKDLFAQSLAGLLFRTLIVAWIRANLCVYISRELWDDFLGVLSSLTEWEELITEWSNIMDSLTAVLARTVYGVEMTNLPLDKLSEQKEKKQRGKGCVLDSQKGTSVGRSFSLSWRSHPDVTEPMRFRSATTSGAPGVEKARNIVRQKATEVEELQQAESTLAADSEYLVVGQQQVPRSSSTSDITEPFCSDSSQGYSPMLPQPAFYMASGDLNSGPYACTAGTLPLSHLPSPGQKVENSQNLSSSESKSVQESKGHVKREHEGITILVRRSSSPAELDLKDDLQQTQGRCRERQKSESTGSDTAVGSSNETELPMSQWQTCDEDPELSTPTDAVPDSDARHWLQLSPTDASNLTDSRECLADDCSIIAGGNLTGWHPDSAAVLWRRVLGILGDVNNIQSPKIHARVFGYLYKLWHKLAKIRDNLAVSLDNQSSPSPPLLIPPLRMFASWLFKATTLPNEYKEGKLQAYKLICAMMTRRQDVLPNSDFLVHFYLVMHLGLTSEDQDVLNTIIRNCSPRFFSLGLPGFSMLVGDFITAAARVLSADMLLVPRSEALTILGSLVCFPNTYRKIPLLQSVPEMSEVITGTEDVKHYLINILLKNATEEPNECARCIAICSLGVWICEELTQCASHPQVKDAINVIGVTLKFPNKIVAQVACDVLQLLVSYWEKLQMFETALPRKMAEILVATIAFLLPSAEYSSVETDKKFIVSLLLCLLDWCMALPVNALLHPVSTAVLEELHPPRAPLLDYIYRVLHCCVCGSSTYTQQSHYTLTLADLSSTDYDPFLPLANVRNSEPVQYHSSADLGNLLTVEEEKKRRSVELIPLTARMVMAHLVNHLGHYPLSGGPAVLHSLVSENHDNAHVEGAELSSEVFRSPNLQLFVFNDSTLISYLQTPAEGPDGGTSGGSLSDVRVIVRDISGKYSWDGKVLYGPLEGRLTPSGRNPSFQISGWHQHMCGPQKDLSHSEEGDDALDKLLESIGHTSPECLLPSQLNLNEPSPPPCGMNCDQEKEIIEVILRQSIQEDEYVQRCNSNSAVKVTSQGQPSPVEPRGPFYFCRLLLDDLGMNSWDRRKNFHLLKKNSKLLRELKNLDSRQCRETHKIAVFYIAEGQEDKCSILANERGSQAYEDFVAGLGWEVDLSTHCGFMGGLQRNGSTGQTAPYYATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHSRDYRRGIIPTAFGDVSIIIYPMKNHMFFITITKKPEVPFFGPLFDGAIVSGKLLPSLICATCINASRAVKCLIPLYQSFYEERALYLEAIIQNHREVMTFEDFAAQVFSPSPSYSLSGTD", "length": 1910 }, "evidence": [ { "id": "A0A287BN99", "url": "https://omabrowser.org/oma/group/A0A287BN99/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A3KGS3-1", "protein_name": "Ral GTPase-activating protein subunit alpha-2", "gene_name": "Ralgapa2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRRSHGDVKKSTQKVLDPKKDVLTRLKHLRALLDNVDASDLKQFFETNYSQIYFIFYENFITLENSLKLKGNNKSQREELDSILFLFEKILQFLPERIFFRWHYQSIGSTLKKLLHTGNSIKIRCEGIRLFLLWLQALQTNCAEEQVLIFACLVPGFPAVLSSRGPCTLETLINPSPSIVDAKIYPEEITPLLPAISGEKIAEDQTCFFLQILLKYMVIQAASLEWKNKENQDTGFKFLFTLFRKYYLPHLFPSFTKLTNIYKPVLEIPHLRPKPVYVTVTRDNETIYSTKIPYMAARVVFIKWIVTFFLEKKYLTATQNTKNGVDVLPKIIQTVGGGAIQEKVPELDGAGSTEQDKSHSNSSTLSDRRLSNSSLCSIEEEHRTVYEMVQRILLSTRGYVNFVNEVFRQAFLLPSCEISVTRKVVQVYRKWILQNKPVFMEEPDKKDVAQEDADKLGLSETDSKEASSESSGHKRSSSWGRTYSFTSAMSRGCVTEEDNTNVKAGAQAMLQVFLTNAANVFLLEPCAEVPMLLREQVDASKAVLIIFRRMIMELTMNQKTWEQMLQILLRITEAVMQKPKDKHVKDLFAQSLAGLLFRTLIVAWIRANLCVYISRELWDDFLRVLSSLTEWEELITEWSNIMDSLTAVLARTVYGVEMTNLPLDKLSEQKEKKQRGKGCILEPQKGTAVGRSFSLSWRSHPDVTEPMRFRSATTSGAPGVEKARNTVRQKATEVEEFQQAESTAAADCDYLVVGQQQVPRSSSTSDITERLYSDSSQGQKVEHSQNLSSSEPKSVQESKGHVTHEHEGITMLVRRSSSPAELELKDDLQQAHGRCRQRQTSESTGSDTVVGYSNEAELPVSPWQACEEDPDLSTPTDAVADSDARHWLQLSPTDASNLTDSRECLADDCSIIAGGNLTGWHPDSAAVLWRRVLGILGDVNNIQSPKIHAKVFGYLYELWYKLAKIRDNLAISLDNQSSPSPPLLIPPLRMFASWLFKATTLPNEYKEGKLQAYKLICAMMTRRQDVLPNSDFLVHFYLVMHLGLTSEDQDVLNTIIKNCSPRFFSLGLPGFSMLVGDFITAAARVLSTDMLAAPRSEALTLLGSLVCFPNTYQEIPLLQSVPEVSDVVTGAEDVKHYLINILLKNATEEPNECARCIAICSLGVWICEELAQSASHPQVKDAINVIGVTLKFPNKIVAQVACDVLQLLVSYWEKLQMFETALPRKMAEILVATIAFLLPSAEYSSVETDKKFIVSLLLCLLDWCMALPVSALLHPVSTAVLEELHPSRAPLLDYIYRVLHCCVCGSSTYTQQSHYTLTLADLSSTDYDPFLPLANVRNSEPIQYHSSADLGNLLTVEEEKKRRSVELIPLTARMVMAHLVNHLGHYPLSGGPAVLHSLVSENHDNAHVEGTELSSEVFRSPNLQLFVFNDSTLISYLQTPAEGPAGGTSGGSLSDVRVIVRDISGKYSWDGKVLYGPLEGRLAPNGRNPSFQISGWHHHTCGPQKDLFNGEEGDDVLDKLLENIGHTSPECLLPSQLNLNEPSPTPCAMNWDQEKAIMEVILRQSAQEDEYVQRCNSDSSVTVTSQGQPSPVEPRGPFYFCRLLLDDLGMNSWDRRKNFHLLKKNSKLLRELKNLDSRQCRETHKIAVFYIAEGQEDKCSILANERGSQAYEDFVAGLGWEVDLSTHCGFMGGLQRNGSTGQTAPYYATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHSRDYRRGIIPTAFGDVSIIIYPMKNHMFFITITKKPEVPFFGPLFDGAIVSGKLLPSLICATCINASRAVKCLIPLYQSFYEERALYLEAIIQNHREVMTFEDFAAQVFSPSPSYSVSGTD", "length": 1872 }, "evidence": [ { "id": "A0A287BN99", "url": "https://omabrowser.org/oma/group/A0A287BN99/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P86411-1", "protein_name": "Ral GTPase-activating protein subunit alpha-2", "gene_name": "Ralgapa2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSRRSHGDVKKSTQKVLDPKKDVLTRLKHLRALLDNVDASDLKQFFETNYSQIYFIFYENFITLENSLKLKGNNKSQREELDSILFLFEKILQFLPERIFFRWHYQSIGSTLKKLLHTGNSIKIRCEGIRLFLLWLQALQTNCAEEQVLIFACLVPGFPAVLSSRGPCTLETLINPSPSVVDAKIYPEEITPLLPAVSGEKIAEDQTCFFLQILLKYMVIQAASLEWKNKENQDTGFKFLFTLFRKYYLPHLFPSFTKLTNIYKPVLEIPHLRPKPLYVTVTRDNETIYSTKIPYMAARVVFIKWIVTFFLEKKYLTATQNTKNGVDVLPKIIQTVGGGAIQEKVPELDGAGATEQDKSHSNSSTLSDRRLSNSSLCSIEEEHRTVYEMVQRILLSTRGYVNFVNEVFRQAFLLPSCEISITRKVVQVYRKWILQNKPVFMEEPDKKDVAEEDADKLGLSETDSKEVSSESSGHKRSSSWGRTYSFTSAMSRGCVTEEDNTNVKAGAQAMLQVFLTNAANVFLLEPCVEVPMLLREQVDACKAVLIIFRRMIMELTMNQKTWEQMLQILLRITEAVMQKPKDKLVQDSFARSLAGLLFRTLIVAWIRANLCVYISRELWDDFLRVLSSLTEWEELITEWSNIMDSLTAVLARTVYGVEMTNLPLDKLSEQKEKKQRGKGCVLEPQKGTAVGRSFSLSWRSHPDVTEPMRFRSATTSGAPGVEKARNTVRQKATEVEEFQQAESTAAADCDYLVVGQQPVPRSSSTSDITERLYSDSSQGQKVENSQNLSSSEPKSVQESKGHVTHEHEGVTILVRRSSSPAELDLKEESQQTHGRCRERQKSESTGSDMAVGYSNEAELPVSPWQTCEEDPELSTPTDAVADSDARHWLQLSPTDASNLTESRECLADDCSIIAGGNLTGWHPDSAAVLWRRVLGILGDVNNIQSPKIHAKVFSYLYELWYKLAKIRDNLAISLDNQSSPSPPLLIPPLRMFASWLFKATTLPNEYKEGKLQAYKLICAMMTRRQDVLPNSDFLVHFYLVMHLGLTSEDQDVLNTIIKNCSPRFFSLGLPGFSMLVGDFITAAARVLSTDMLAAPRSEALTLLGSLVCFPNTYQEIPLLQSVPEVSDVVTGAEDVKHYLINILLKNATEEPNECARCIAICSLGVWICEELAQCASHPQVKDAINVIGVTLKFPNKIVAQVACDVLQLLVSYWEKLQMFETALPRKMAEILVATIAFLLPSAEYSSVETDKKFIVSLLLCLLDWCMALPVSALLHPVSTAVIEELHPSRAPLLDYIYRVLHCCVCGSSTYTQQSHYTLTLADLSSTDYDPFLPLANVRNSEPVQYHSSADLGNLLTVEEEKKRRSVELIPLTARMVMAHLVNHLGHYPLSGGPAVLHSLVSENHDNAHVEGTELSSEVFRSPNLQLFVFNDSTLISYLQTPAEGPAGGTSGGSLSDVRVIVRDISGKYSWDGKVLYGPLEGRLAPSGRNPSFQISGWHHHTCGPQSNLFHGEEGDDVLDKLLENIGHTSPECLLPSQLNLNEPSPTPSAMNCDQEKEIIEVILRQSTQEDEYVQRCHSNSAVKVTSQGQPSPVEPRGPFYFCRLLLDDLGMNSWDRRKNFHLLKKNSKLLRELKNLDSRQCRETHKIAVFYIAEGQEDKCSILANERGSQAYEDFVAGLGWEVDLSTHCGFMGGLQRNGSTGQTAPYYATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHSRDYRRGIIPTAFGDVSIIIYPMKNHMFFITITKKPEVPFFGPLFDGAIVSGKLLPSLICATCINASRAVKCLIPLYQSFYEERALYLEAIIQNHREVMTFEDFAAQVFSPSPSYSLSGTD", "length": 1872 }, "evidence": [ { "id": "A0A287BN99", "url": "https://omabrowser.org/oma/group/A0A287BN99/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2PPJ7-1", "protein_name": "Ral GTPase-activating protein subunit alpha-2", "gene_name": "RALGAPA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"url": "https://alphafold.ebi.ac.uk/entry/A0A287BNC3", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BNC3", "url": "https://www.uniprot.org/uniprotkb/A0A287BNC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BNC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BNC3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDTGNLSVVSEFVLLGLCQSWAMQVLLLLIFFMLYLIIVSGNITIMILIIIDTHLHSPMYFLLANLSFVDMWLSSENKTISFGDCVCQILFVHFVGGGEMMLLVVMAYDCYVAICKPLHYSIIMNLQKCLGLVAISWTIGFVHALSQMVMIRQLPFCDPREMDSFFCDILLVIKLACIDSCSLGILMNADSGVLAMTCFILLLISYIYILFTVRQGSKTGASRALSTCTAHITVVVFFFGPCIFIYVWPLSITLVDKFLAVFYSVITPLLNPAIYTLRNKEIKNAMKRFRSYYLHSKENI", "length": 300, "header": "tr|A0A287BNC3-1|A0A287BNC3_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=A0A287BNC3-1" }, "isoforms": [ { "isoform_ac": "A0A287BNC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BNC3/entry#A0A287BNC3-1", "sequence": { "sequence": "MDTGNLSVVSEFVLLGLCQSWAMQVLLLLIFFMLYLIIVSGNITIMILIIIDTHLHSPMYFLLANLSFVDMWLSSENKTISFGDCVCQILFVHFVGGGEMMLLVVMAYDCYVAICKPLHYSIIMNLQKCLGLVAISWTIGFVHALSQMVMIRQLPFCDPREMDSFFCDILLVIKLACIDSCSLGILMNADSGVLAMTCFILLLISYIYILFTVRQGSKTGASRALSTCTAHITVVVFFFGPCIFIYVWPLSITLVDKFLAVFYSVITPLLNPAIYTLRNKEIKNAMKRFRSYYLHSKENI", "length": 300, "header": "tr|A0A287BNC3-1|A0A287BNC3_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=A0A287BNC3-1" }, "locus": { "chromosome": "AEMK02000661.1", "start_pos": 369740, "end_pos": 368806, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048206.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048206.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057662.3", "url": "https://www.ensembl.org/id/ENSSSCP00000057662.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BNC3", "url": "https://www.uniprot.org/uniprotkb/A0A287BNC3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G 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"https://www.uniprot.org/uniprotkb/A0A287BP14" } ] } ], "protein_names": [ { "name": "Meiosis initiator", "type": "synonym", "evidence": [ { "id": "A0A287BP14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BP14/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BP14", "url": "https://www.uniprot.org/uniprotkb/A0A287BP14" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MEIOSIN", "url": "https://www.uniprot.org/uniprotkb/A0A287BP14", "locus": { "chromosome": "6", "start_pos": 52095099, "end_pos": 52079224, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039916", "url": "https://www.ensembl.org/id/ENSSSCG00000039916" } ] } } ], "crossref": [ { "id": "A0A287BP14", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BP14", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039916", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039916", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21977", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21977", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR009071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47658", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47658", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47658:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47658:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00505", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00505", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BP14", "url": "https://www.uniprot.org/uniprotkb/A0A287BP14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BP14-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BP14-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "KLGLGTSDAKFHFGCPNQNQLLSPNRKQRKNHTSKLQELALLLPMALKTGTKKLTKKEILLHVLNYIQFLQKSIDVAKALLELHTTAGKGGLGGDGLLGPEQRGASPEPPSGDRQAPSPVSPCHSAVPERQTRAQNPRRCLALDKPKKQATPSPDRKGGNVAGTTTLPRCADSRSHPKAASSPSQGDRKGGRSGLTLLEVAENSVHCDGGCLSSAFCAPQPASQLTQGTLTHPKGTARPGSRSDSTSCRQKLVFYDPSEEVDKESPDADPWLPAWSPEGCPHGSPLALGPPQIDNWSLTGHPSEILGLRPSLFSSPGKLLPEQILEDGPEDLTYLDPASSPSACGLQGPEKVGTCPLCQSSFSLDHCYLSLSENSRALSSPSSEATDTDTDSDTDSERRPQEVRETAIRQVPRVRPTLTSLSPTQGAEADREGPPSSSNEDEDGDYTWTPTRRATALPAAGRKARKGRAGRGPVRPKESKKAPCPPQTKKKCVNGFIMFCRMNRKQYIRACPGTASTAATKELAQLWRVMTLQERRPYCIKARRFSRQHNRIVKQDSSSSEDEDWETPKPFYQLLAEKARCSPAPAPPLPPHHV", "length": 594, "header": "tr|A0A287BP14-1|A0A287BP14_PIG Isoform 1 of Meiosis initiator OS=Sus scrofa OX=9823 GN=MEIOSIN PE=4 SV=3 CANONICAL=A0A287BP14-1" }, "isoforms": [ { "isoform_ac": "A0A287BP14-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BP14/entry#A0A287BP14-1", "sequence": { "sequence": "KLGLGTSDAKFHFGCPNQNQLLSPNRKQRKNHTSKLQELALLLPMALKTGTKKLTKKEILLHVLNYIQFLQKSIDVAKALLELHTTAGKGGLGGDGLLGPEQRGASPEPPSGDRQAPSPVSPCHSAVPERQTRAQNPRRCLALDKPKKQATPSPDRKGGNVAGTTTLPRCADSRSHPKAASSPSQGDRKGGRSGLTLLEVAENSVHCDGGCLSSAFCAPQPASQLTQGTLTHPKGTARPGSRSDSTSCRQKLVFYDPSEEVDKESPDADPWLPAWSPEGCPHGSPLALGPPQIDNWSLTGHPSEILGLRPSLFSSPGKLLPEQILEDGPEDLTYLDPASSPSACGLQGPEKVGTCPLCQSSFSLDHCYLSLSENSRALSSPSSEATDTDTDSDTDSERRPQEVRETAIRQVPRVRPTLTSLSPTQGAEADREGPPSSSNEDEDGDYTWTPTRRATALPAAGRKARKGRAGRGPVRPKESKKAPCPPQTKKKCVNGFIMFCRMNRKQYIRACPGTASTAATKELAQLWRVMTLQERRPYCIKARRFSRQHNRIVKQDSSSSEDEDWETPKPFYQLLAEKARCSPAPAPPLPPHHV", "length": 594, "header": "tr|A0A287BP14-1|A0A287BP14_PIG Isoform 1 of Meiosis initiator OS=Sus scrofa OX=9823 GN=MEIOSIN PE=4 SV=3 CANONICAL=A0A287BP14-1" }, "locus": { "chromosome": "6", "start_pos": 52094660, "end_pos": 52079224, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053298.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053298.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058164.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058164.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BP14", "url": "https://www.uniprot.org/uniprotkb/A0A287BP14" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A287BP14", "url": "https://www.uniprot.org/uniprotkb/A0A287BP14" } ], "pmid": "" }, { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "A0A287BP14", "url": "https://www.uniprot.org/uniprotkb/A0A287BP14" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287BP14", "url": "https://www.uniprot.org/uniprotkb/A0A287BP14" } ], "pmid": "" } ] 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"https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00030", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110259383", "url": "https://www.ncbi.nlm.nih.gov/gene/110259383", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043549", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043549", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110259383", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259383", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DKHCDAR", "url": "https://omabrowser.org/oma/group/DKHCDAR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BPK3", "url": "https://www.orthodb.org/?gene=A0A287BPK3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46291", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46291", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46291:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46291:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020939969", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939969", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BPK3", "url": "https://www.uniprot.org/uniprotkb/A0A287BPK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BPK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BPK3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKTNMWFLERLRGSGENGATGGEGGDKAAKGPLYSNVLTPDKIPDFFIPPKLPASPAEPEGQAELGPSTSEQNLASAPPRRGPRSPRLPAKLAAESKSLLKAATRHVIQIESAEDWPAEEAATNADPQAQGAMSLPSVPKAQTSYGFTTLAESPHTRRKESLFHSEHGALAQVGSPGTRRRRGTAKGNGGDGAPREASGALMSPGRCVSGGESDTASSAESSPFGSPLLSRSVSLLKGFAQDSQAKVSQLKHSVGRHGSLSADDSTPDTSPGTRRRFPRRAAPEPGPEPSPTPRAEHAVRMGVRGSVRLLAEYEAAQARLRVRLLAAEGLYDRLCDARSINCCVGLCLVPGKLQKQRSTIVKNSRHPVFNEDFFFDGLGPASVPKLALRIKVVNKGSSLKRDTLLGEKELPLTSLLPFL", "length": 420, "header": "tr|A0A287BPK3-1|A0A287BPK3_PIG Isoform 1 of C2 calcium-dependent domain-containing protein 4C OS=Sus scrofa OX=9823 GN=C2CD4C PE=3 SV=1 CANONICAL=A0A287BPK3-1" }, "isoforms": [ { "isoform_ac": "A0A287BPK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BPK3/entry#A0A287BPK3-1", "sequence": { "sequence": "MKKTNMWFLERLRGSGENGATGGEGGDKAAKGPLYSNVLTPDKIPDFFIPPKLPASPAEPEGQAELGPSTSEQNLASAPPRRGPRSPRLPAKLAAESKSLLKAATRHVIQIESAEDWPAEEAATNADPQAQGAMSLPSVPKAQTSYGFTTLAESPHTRRKESLFHSEHGALAQVGSPGTRRRRGTAKGNGGDGAPREASGALMSPGRCVSGGESDTASSAESSPFGSPLLSRSVSLLKGFAQDSQAKVSQLKHSVGRHGSLSADDSTPDTSPGTRRRFPRRAAPEPGPEPSPTPRAEHAVRMGVRGSVRLLAEYEAAQARLRVRLLAAEGLYDRLCDARSINCCVGLCLVPGKLQKQRSTIVKNSRHPVFNEDFFFDGLGPASVPKLALRIKVVNKGSSLKRDTLLGEKELPLTSLLPFL", "length": 420, "header": "tr|A0A287BPK3-1|A0A287BPK3_PIG Isoform 1 of C2 calcium-dependent domain-containing protein 4C OS=Sus scrofa OX=9823 GN=C2CD4C PE=3 SV=1 CANONICAL=A0A287BPK3-1" }, "locus": { "chromosome": "2", "start_pos": 77850785, "end_pos": 77849526, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096402.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096402.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079779.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079779.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 293, "start_aa": "Thr", "end_pos": 293, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr293", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BPK3", "url": "https://www.uniprot.org/uniprotkb/A0A287BPK3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110259383", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259383", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1ADJ4-1", "protein_name": "C2 calcium dependent domain containing 4C", "gene_name": "C2CD4C", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MWLLERLRGMAENSGARGSGPDDSPRGSRYSNVLTPDKIPDFFIPPKLSAAPAEPEGTEPTAPPILGPSVSEQDLTDRKTPRSPRPPSRPRAKASGRHIIQIESAEDWTAEGGFGTNVDPQAQTAMSLPYVPKAQTSYGFATLVESPHTRRKESLFHSEHSSLCPSPATSPSAQRRAKLNGESRAQAPSDLGAALMHPGRYFSGGESDTCSSAESSPFGSPLLSRSVSLLKIFSQESQSKVIKLKHSVARNSSLSTDDSSADTSPSAQRRSRSAPAGGQPAAGTELPQGRPREHSLRLSRGGRLRLTADYDPSNARLRVQLICAEDLYDALVDVRGIHCCVSLCLNPGKLQKQRSTIIKNSRNPVFNEDFFFDGLGPSHVRKLSLKLKVVNKGSSLKRDTLLGEKELPLSALL", "length": 413 }, "evidence": [ { "id": "A0A287BPK3", "url": "https://omabrowser.org/oma/group/A0A287BPK3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3N2V3-1", "protein_name": "C2 calcium-dependent domain-containing protein 4C", "gene_name": "C2CD4C", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKKTNMWFLERFRGSGENGAAGGEGGDKAAKGPLYSNVLTPDKIPDFFIPPKLPAGPAEPEAQAELGPSTSEQNLASAAPRRAPRSPRLPAKLAAESKSLLKAATRHVIQIESAEDWPAEETATNADPQAQGAMSLPSVPKAQTSYGFATLAESPHTRRKESLFHSEHGALAQVGSPGTRRRRGGVKANGGDGGPREAGGTLMSPGRCVSGGESDTGSSAESSPFGSPLLSRSVSLLKGFAQDSQAKVSQLKHSVGRHGSLSADDSTPDTSPGARRRLHRRATPEPGPESGPASRAEHAVRMGPRGSVHLLAEYEAAQARLRVRLLAAEGLYDRMCDARSINCCVGLCLVPGKLQKQRSTIVKNSRHPVFNEDFFFDGLGPASVRKLALRIKVVNKGSSLKRDTLLGEKELPLTSLLPFL", "length": 420 }, "evidence": [ { "id": "A0A287BPK3", "url": "https://omabrowser.org/oma/group/A0A287BPK3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5HZI2-1", "protein_name": "C2 calcium-dependent domain-containing protein 4C", "gene_name": "C2cd4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"MGSRIFLLLCFIGLSHEAKEKIVNGTECVPHSQPWQVGLFEGTHLRCGGVLIDPRWVLTAAHCSGSRYWVRLGEHSLSWLDFTEQIRRSGLSVTHPGYQGALKSHDHDLRLLRLGTPVLQTRSVRPLPLPTSCAAAGTECHISGWGTTNQPWSAFPDRLQCLNLSIVSEGTCRAVFPGRITDNMVCAGGSAGEDACQVDSGGPLVCGGVLQGLVSWGAVGPCGQDGIPGVYTKICKYVDWIRMVIGNN", "length": 248, "header": "tr|A0A287BPZ6-1|A0A287BPZ6_PIG Isoform 1 of tissue kallikrein OS=Sus scrofa OX=9823 GN=KLK12 PE=3 SV=1 CANONICAL=A0A287BPZ6-1" }, "locus": { "chromosome": "6", "start_pos": 55692274, "end_pos": 55687241, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061036.2", "url": "https://www.ensembl.org/id/ENSSSCT00000061036.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058505.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058505.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BPZ6", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110261031", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261031", "resource": "KEGG Pathway" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MKR5-1", "protein_name": "Kallikrein-12", "gene_name": "LOC100752058", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MRPSTLLLLCVVGLSQADREKIFNGVECVKNSQPWQVGLFRGKYLRCGGVLVDRQWILTAAHCSGKYVVRLGEHSLTKLDWTEQLRLTTFSMTHPSYQGAHQNHEHDLRLLRLSRPVHLTHAVRPLALPAFCAPMGTKCHISGWGITNKPWDPFPDRLQCLDLSIVSNNTCQAVFPGRVTENMVCAGGEAGKDACQGDSGGPLVCGGVLQGLVSWGSVGPCGQKGIPGVYTKICKYVPWIRTVIRNN", "length": 247 }, "evidence": [ { "id": "A0A287BPZ6", "url": "https://omabrowser.org/oma/group/A0A287BPZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZD22-1", "protein_name": "Kallikrein related-peptidase 12", "gene_name": "Klk12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLNILLLLCVVGLSQADREKIYNGVECVKNSQPWQVGLFHGKYLRCGGVLVDRKWVLTAAHCSGKYMVRLGEHSLSKLDLTEQLRLTTFSITHPSYHGAYQNHEHDLRLLRLNRPISLTYAVRPVALPSSCAPTGAKCHISGWGTTNKPWDPFPDRLQCLDLSIVSNETCRAVFPGRVTENMLCAGGEAGKDACQGDSGGPLVCGGVLQGLVSWGSVGPCGQKGIPGVYTKVCKYTDWIRVVIRNN", "length": 247 }, "evidence": [ { "id": "A0A287BPZ6", "url": "https://omabrowser.org/oma/group/A0A287BPZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9UKR0-1", "protein_name": "Kallikrein-12", "gene_name": "KLK12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGLSIFLLLCVLGLSQAATPKIFNGTECGRNSQPWQVGLFEGTSLRCGGVLIDHRWVLTAAHCSGSRYWVRLGEHSLSQLDWTEQIRHSGFSVTHPGYLGASTSHEHDLRLLRLRLPVRVTSSVQPLPLPNDCATAGTECHVSGWGITNHPRNPFPDLLQCLNLSIVSHATCHGVYPGRITSNMVCAGGVPGQDACQGDSGGPLVCGGVLQGLVSWGSVGPCGQDGIPGVYTYICKYVDWIRMIMRNN", "length": 248 }, "evidence": [ { "id": "A0A287BPZ6", "url": "https://omabrowser.org/oma/group/A0A287BPZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "A0A287BPZ6", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A287BPZ6", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ6" } ], "pmid": "" }, { "name": "secretory granule", "id": "GO:0030141", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030141", "evidence": [ { "database": "UniProtKB", "id": "A0A287BPZ6", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A287BPZ6", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ6" } ], "pmid": "" }, { "name": "protein maturation", "id": "GO:0051604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051604", "evidence": [ { "database": "UniProtKB", "id": "A0A287BPZ6", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 24, "end_pos": 26, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-8850786", "name": "SPINK6 binds KLK12", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "extracellular region", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8850786", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8850786" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BPZ6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 248, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BPZ6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BPZ6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BPZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ6" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 246, "start_aa": "Ile", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 24, "end_pos": 26 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BPZ9-1", "uniprot_ac": "A0A287BPZ9", "uniprot_id": "A0A287BPZ9_PIG", "mass": { "chemical_mass": 16476.0, "monoisotopic_mass": 16476.0 }, "refseq": { "ac": "XP_020922132", "name": "oxidoreductase-like domain-containing protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922132" }, "gene_names": [ { "name": "OXLD1", "type": "recommended", "evidence": [ { "id": "A0A287BPZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ9" } ] }, { "name": "OXLD1", "type": "synonym", "evidence": [ { "id": "XP_020922132", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922132" } ] } ], "protein_names": [ { "name": "Oxidoreductase like domain containing 1", "type": "synonym", "evidence": [ { "id": "A0A287BPZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ9/entry#names_and_taxonomy" } ] }, { "name": "oxidoreductase-like domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "XP_020922132", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922132" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BPZ9", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OXLD1", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ9", "locus": { "chromosome": "12", "start_pos": 1234375, "end_pos": 1232872, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033788", "url": "https://www.ensembl.org/id/ENSSSCG00000033788" } ] } } ], "crossref": [ { "id": "ENSSSCG00000033788", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033788", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110255942", "url": "https://www.ncbi.nlm.nih.gov/gene/110255942", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019180", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019180", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255942", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255942", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RKFGKDH", "url": "https://omabrowser.org/oma/group/RKFGKDH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BPZ9", "url": "https://www.orthodb.org/?gene=A0A287BPZ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21193", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21193", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21193:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21193:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09791", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09791", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020922132", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922132", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BPZ9", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BPZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLRSVAGGCWVAAAARSRVLLSSWDRCQRLPGDSSILHRTRGFGGHRGFGKDHEEVETRAGATDPGQPKSSLPGGRPSESPYPPPPELQPPTNCCMSGCPNCVWVEYADALLRHYQDGGQRALAALEEHVADETLKAFLRVEIQLRLKSGG", "length": 152, "header": "tr|A0A287BPZ9-1|A0A287BPZ9_PIG Isoform 1 of Oxidoreductase like domain containing 1 OS=Sus scrofa OX=9823 GN=OXLD1 PE=4 SV=1 CANONICAL=A0A287BPZ9-1" }, "isoforms": [ { "isoform_ac": "A0A287BPZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ9/entry#A0A287BPZ9-1", "sequence": { "sequence": "MLLRSVAGGCWVAAAARSRVLLSSWDRCQRLPGDSSILHRTRGFGGHRGFGKDHEEVETRAGATDPGQPKSSLPGGRPSESPYPPPPELQPPTNCCMSGCPNCVWVEYADALLRHYQDGGQRALAALEEHVADETLKAFLRVEIQLRLKSGG", "length": 152, "header": "tr|A0A287BPZ9-1|A0A287BPZ9_PIG Isoform 1 of Oxidoreductase like domain containing 1 OS=Sus scrofa OX=9823 GN=OXLD1 PE=4 SV=1 CANONICAL=A0A287BPZ9-1" }, "locus": { "chromosome": "12", "start_pos": 1234222, "end_pos": 1232894, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041870.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041870.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058254.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058254.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu 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"database": "Ensembl Peptide", "id": "ENSSSCP00000060720.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060720.1" } ] } }, { "isoform_ac": "A0A5G2R194-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ14/entry#A0A5G2R194-1", "sequence": { "sequence": "MPKGGRKGGHKGRARQYTSPEEIDAQLQAEKQKARVARF", "length": 39, "header": "tr|A0A5G2R194-1|A0A287BQ14_PIG Computationally mapped isoform of PDGFA associated protein 1 OS=Sus scrofa OX=9823 GN=PDAP1 PE=1 SV=1 CANONICAL=A0A287BQ14-1" }, "locus": { "chromosome": "3", "start_pos": 6355120, "end_pos": 6349346, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075128.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075128.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070130.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070130.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR13", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR13" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287BQ14", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ14" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287BQ14", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ14" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BQ14-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 181, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BQ14-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BQ14" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BQ14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ14" }, { "id": "PF10252", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10252" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Casein kinase substrate phosphoprotein PP28", "eco_id": "ECO_0000259", "start_pos": 85, "end_pos": 162, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BQ24-1", "uniprot_ac": "A0A287BQ24", "uniprot_id": "A0A287BQ24_PIG", "mass": { "chemical_mass": 179813.0, "monoisotopic_mass": 179813.0 }, "refseq": { "ac": "XP_020935852", "name": "uncharacterized protein KIAA1210 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935852" }, "gene_names": [ { "name": "KIAA1210", "type": "synonym", "evidence": [ { "id": "XP_020935852", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935852" } ] } ], "protein_names": [ { "name": "KIAA1210", "type": "synonym", "evidence": [ { "id": "A0A287BQ24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ24/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein KIAA1210 homolog", "type": "synonym", "evidence": [ { "id": "XP_020935852", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935852" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BQ24", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ24" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ24", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000040820", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040820", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518589", "url": "https://www.ncbi.nlm.nih.gov/gene/100518589", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026713", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026713", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518589", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518589", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KFQPQMS", "url": "https://omabrowser.org/oma/group/KFQPQMS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BQ24", "url": "https://www.orthodb.org/?gene=A0A287BQ24", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47743", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47743", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47743:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47743:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_020935852", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935852", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BQ24", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQ24-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ24-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPSRQGAKSVAGSLGGTMAGFYVCLKTPHDFTMAESLSEVSSSMEVLEPSDEGKKKSKFKAFKSFFGKKKKKEPEDAQGERELKPSFSSGNINISSLKQVLESQHIKPRAKSSMGNKSLSYDSIFMVEPELQRSASKICPFLEIQRGRSLQRSLVFRTLPRAGTGSMHGAVFGAGPQYASRSGVWVAGSKITEIPPLHPRQPSISPPLIRSDTISKDLEEISVDDESPKSPQKKVSSHKILTLKKAKPEQEEPSLLVSEKEKSPTKSKEADQKKPKKDNAGPSSQEQSNKTEVYEQKTTDQTAHTDAAGSQGFPLPAAHRRRHGGKGSSTSATSECGSKGRSFKQSSRALGLGDGTGSPPADKTSQDYPFWNLPLEKQDMEQPTPPQTESTTPQEPLAGKDDLGRRNAGTDFKARKASASEPTHEDMEEFPASGPSPCHEDRASGAKKAEARAALLPVVESPLTTQDVIFSVAVEDQVFMDSSHSQSEEEEDASSFDLKSVQFKMKSAQDTYKEKSPRNVLQAFPASTAATAGALAEGGVSAERLPPRSLSQSLGKPKAEAVASDSESTSEAGSGSEQHLAPGYSFQPPKKVKNEQDVFPESKSSAGELSSPKQQRVPRYASRSLGKPRAKAVWSDSESALEVGGGAEQQQAPTHPFQPLRKSKGGQGVVAGSSLVVQRSRSDEQLSPRCASQALREPEDEASTGSNSYIERYNSAGDRSSSEEDLPPTHPSQALGRPKDQKDVSSVSKTGPDVWGVSVEQMPPRNPSQTWVRPQFEQQAGAGPESTAEEWGISIVPLPPRVTSKRLTKPKVESPISSGPEITTSMELPPPRHPSQPQKKPLGEQEISAGPEGTAAEGGISAEPLLPRYHSQPLMRPLAQQQVSAGPESAVAEGSLSREPLPLQVLVQPLTCPIAEQNVFSHLEGVAAEKAILLETLLPKYSPQSLTDPQVQELLPEDTAMEEGMFAQLLPPRCPSQLSVRPKFWPQTVPLDSVSAAAEWSSPGEPMSPRYTSQQPWVSPIFEQQASARPESAANEWGNAMEPVSPCVTSQPLARPIVKQPISAGPEGVAIEGGASPELLPPKPSRSTVKHRVHQMSSFESAAVEVGISGKPPPPKYPAQVVKKANVQEMSSPLESAAAEEGIAQKLVLPGQSFVKFMAQQVFSESPATEEGIYVDPLSTNQPSKSVLRPKAEHQVSSGWESGSIEGDLSLKQVPTPSPVESLERPEGLQEVCSHSGSAPVTWSSSKEPLPPRHLAQALGKPQYQQDIASVSEEWKSSKEQLPGRRPVPAKDEAESQPQTFSAGPGSAPVELGSSEEHLPPRHPFQALADLEHKQQAYSSSTSTATEGTVFERSSSCWSLPRAPASPNKSKKHSQSFEDLVKTVPTPATKPVKVAVAPAWQTPTAGATYSNEEVLESGDQSTSHSNSSTNGAEVENLFGIRLRKTCSSQESEKQDFAKLPSPSSGPVSSSTEREQHIKKRASKGLLGTAQNLPAVSSSAERPQRRPKSESVAKKQPAHRTPGKAPGRQSDFATSEPSWMTTVKQRQGSSQANLPTKEPKTKSRDGAKAETKEPKHGRAGLANENKPRRTLTSDVNRQEKMARMKPLKTIKTGFEDEKIVHVPSVEEETRKCSTLPAVLQQPVEPAEPVWFSLAKKKAKAWSHIAEIMQ", "length": 1669, "header": "tr|A0A287BQ24-1|A0A287BQ24_PIG Isoform 1 of KIAA1210 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A287BQ24-1" }, "isoforms": [ { "isoform_ac": "A0A287BQ24-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ24/entry#A0A287BQ24-1", "sequence": { "sequence": "MLPSRQGAKSVAGSLGGTMAGFYVCLKTPHDFTMAESLSEVSSSMEVLEPSDEGKKKSKFKAFKSFFGKKKKKEPEDAQGERELKPSFSSGNINISSLKQVLESQHIKPRAKSSMGNKSLSYDSIFMVEPELQRSASKICPFLEIQRGRSLQRSLVFRTLPRAGTGSMHGAVFGAGPQYASRSGVWVAGSKITEIPPLHPRQPSISPPLIRSDTISKDLEEISVDDESPKSPQKKVSSHKILTLKKAKPEQEEPSLLVSEKEKSPTKSKEADQKKPKKDNAGPSSQEQSNKTEVYEQKTTDQTAHTDAAGSQGFPLPAAHRRRHGGKGSSTSATSECGSKGRSFKQSSRALGLGDGTGSPPADKTSQDYPFWNLPLEKQDMEQPTPPQTESTTPQEPLAGKDDLGRRNAGTDFKARKASASEPTHEDMEEFPASGPSPCHEDRASGAKKAEARAALLPVVESPLTTQDVIFSVAVEDQVFMDSSHSQSEEEEDASSFDLKSVQFKMKSAQDTYKEKSPRNVLQAFPASTAATAGALAEGGVSAERLPPRSLSQSLGKPKAEAVASDSESTSEAGSGSEQHLAPGYSFQPPKKVKNEQDVFPESKSSAGELSSPKQQRVPRYASRSLGKPRAKAVWSDSESALEVGGGAEQQQAPTHPFQPLRKSKGGQGVVAGSSLVVQRSRSDEQLSPRCASQALREPEDEASTGSNSYIERYNSAGDRSSSEEDLPPTHPSQALGRPKDQKDVSSVSKTGPDVWGVSVEQMPPRNPSQTWVRPQFEQQAGAGPESTAEEWGISIVPLPPRVTSKRLTKPKVESPISSGPEITTSMELPPPRHPSQPQKKPLGEQEISAGPEGTAAEGGISAEPLLPRYHSQPLMRPLAQQQVSAGPESAVAEGSLSREPLPLQVLVQPLTCPIAEQNVFSHLEGVAAEKAILLETLLPKYSPQSLTDPQVQELLPEDTAMEEGMFAQLLPPRCPSQLSVRPKFWPQTVPLDSVSAAAEWSSPGEPMSPRYTSQQPWVSPIFEQQASARPESAANEWGNAMEPVSPCVTSQPLARPIVKQPISAGPEGVAIEGGASPELLPPKPSRSTVKHRVHQMSSFESAAVEVGISGKPPPPKYPAQVVKKANVQEMSSPLESAAAEEGIAQKLVLPGQSFVKFMAQQVFSESPATEEGIYVDPLSTNQPSKSVLRPKAEHQVSSGWESGSIEGDLSLKQVPTPSPVESLERPEGLQEVCSHSGSAPVTWSSSKEPLPPRHLAQALGKPQYQQDIASVSEEWKSSKEQLPGRRPVPAKDEAESQPQTFSAGPGSAPVELGSSEEHLPPRHPFQALADLEHKQQAYSSSTSTATEGTVFERSSSCWSLPRAPASPNKSKKHSQSFEDLVKTVPTPATKPVKVAVAPAWQTPTAGATYSNEEVLESGDQSTSHSNSSTNGAEVENLFGIRLRKTCSSQESEKQDFAKLPSPSSGPVSSSTEREQHIKKRASKGLLGTAQNLPAVSSSAERPQRRPKSESVAKKQPAHRTPGKAPGRQSDFATSEPSWMTTVKQRQGSSQANLPTKEPKTKSRDGAKAETKEPKHGRAGLANENKPRRTLTSDVNRQEKMARMKPLKTIKTGFEDEKIVHVPSVEEETRKCSTLPAVLQQPVEPAEPVWFSLAKKKAKAWSHIAEIMQ", "length": 1669, "header": "tr|A0A287BQ24-1|A0A287BQ24_PIG Isoform 1 of KIAA1210 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A287BQ24-1" }, "locus": { "chromosome": "X", "start_pos": 97650493, "end_pos": 97583269, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061255.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061255.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058207.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058207.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1387, "start_aa": "Thr", "end_pos": 1387, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1387", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BQ24", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ24" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518589", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518589", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E9Q0C6-1", "protein_name": "Acrosomal protein KIAA1210", "gene_name": "Kiaa1210", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEGFEASGEEGKKKSKFKAFKNFFSKKKKKEPEEIPEVAVLKPRFSSSSVSGSSLQPALEKQVMESKPKSGMGVKSISHDSVFCLDPEPEKGAGKLHSSPAPHRSKSLKIKSQRSQRLSISPLIRSEKVCEELEKFFASDRTTTTFRRRSSQCSSTPRMSSELSLDPETSESSTQQFSGFSTPATSQGCLDSSAAKSKIALNPRKQKKRKSTSTPVKVKQEEQLQSVPAKEKTTTKTKEAEQGEQKVDSTELSSQEQSSKTETQDTAVDKTPSTDPALRLNPRRRRRRAKNEWEILERGLLKSTQRYSLNTKAESSANKEIAGKEHSFLKLLLEKKDIGQPTTTEAEVTTVQKMPSDKGDVERELADIDVEAQKEPAPQPTSTDVAESMISGPSPHCEDKKKKDKVGVLPWIKKSTSQKEVTVLRKEEVQVHVHPSRVCGEGEEASCPELQRVQPQMKVSLESTTYHKEKHPRSGLPVPSTSISSATAEDDVSPKMNLPLPLRRRPNTGETSSDSKSTSEYESSSEMQLSPAHSFKPTRKPKDDAGAGTADDEEDGDDEKEEKDNDDDDEENVFLKSENVDVEVSKMEKQQALRYSSKLLGKPKAREASAKLESSSEDERSCEEMTSAHSSQSLEEFEECSESRGFIRGSISEERPATRCHSQALQELEEKEVSTESSSYIEKYESSEDLSSSEQEQQVPPVSKSSLKQWSAPAKPVHPIQTAQQQPPAMVNISGGPKKSGEPLSPTQTVKSRLRSQSECQVLAEPEGVVAADWDILMQPPPRPRLEQEVSAGPELTVFEKSIAVQPSGYPPQPSVKPSIKKEISLGAESAPLESPPPQHHFQPLLKPFVKQQVSAFERVISMDPKLPTQFQPRMKPQGKQSFSSTPESTAFEGSTSVDHMTLTLSQPMLQPYQEVPLESETVAAKMISTGQLHSKYSAHPLSSHQSQPVPESTSAEGEELLPSQPSVTPKFQPLMTQGSIPSAWAIPIYSPAPRMDSKPLMGSAIALESKPSRYSLQPWQSTPFEQVSVTPDHDPAAAAASWSPPIDPPTSRIPSQPLMRLAVKQPTCTELASVSVSQSSSLERLSSRFPFQPRADPEHYGAEEGVATLRRSRRHHSQSPVRSEFKEEVSSGSRRAFGERSISVGKMPPKYALQPWLCPEFQQQAKEGDVLRKAWLSGHPSQTISKHKVEKTPLPPKCPSPFLTRSKVQEISSRLESVIAQESSKKPQRGRPPSKSFVNFMAQQVFSESAPSKVVLHPKPVARGRRRPSRSLLKPKLDDYAFLYNWDNEPKEDTTLQNLPMKQPFQLSRKPEEPQEVLPFSEGAPVKWNTSARGISQALGKLSVSVSLPNEWKSSEGQLPSTQPSQAFDVAKLQSPVLPVDSANVPVKWRISEGHQPPQSFFVDYQPQVSVDSASAAAKGASCWPMLKDSASTTNVKYSQGYKDFTKSTPTSVIKPATFTSAPAQKPMVSMGTYFKDEVPKCCDETGTSSLLPTSKADVENVFGVRLRSTSQKIGMKNPDPCKPFVLISAAARKEQANKGDLQGSVGGSKQSRPAFSFEKKQGNWPRYEGTLKKSEVFRPPVAFYDQKMLHPRTRERLTRRSLSLPPTLPQREEPEWFSVAKKKAQAWSQIANIMQ", "length": 1637 }, "evidence": [ { "id": "A0A287BQ24", "url": "https://omabrowser.org/oma/group/A0A287BQ24/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1M9V4-1", "protein_name": "KIAA1210 homolog", "gene_name": "Kiaa1210", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAESLSEVSSSMEGLEVTEEGKKKSKFKAFKSFFGKKKKKEPEEVSEGTMLKPRFSSSSVSVSSLQPVLEMQVMEPMPKSGMGAKAISHDSVFCADPEPEKALDKPHSSPEPQRSRSLKRSPISRTLPRVSGSSALGGLSGSGDHYSSSSGAWASSSKFTEIQSLRSRRLSISPLIIRSEKVSQDLENLFASDRTPNSSRRRSSHDSTSRKSFSELSSDPELSQSSESSSQQPSGFSTPATSQGCLDSSAAKYKIALNPRKQKKKTSFSSVKGKQEEQLYSVPSKEKTTTKIKQVEQKEQRLDNTGLSSQEQSYKTETQETTIDETLSNDAALSYSILGLHPRRRRRRAKNEWGIIERGLLKSTQGYSSLNAKAESSAKQEVAGGEHSFLQLLQEKKGTGQPTTTEAEITSLQEMPSDKGDVEMEKSEIDVEAERALQSTSTDVAESAISGPPSCYEIVSSEGKKKKDKSAVLPWIRRSPSQEEAQVHMHPSQVCEEEEEASSPDLQRFQSQMELSLESITYHKEKHLRSGLRSFSASVSSATAEDDSSIQTTPLPLRRWPNTGEISSDSKSTSEYESSSEMQPSPAESFQPTLKPKYAATGTAADDDDDYDDDNDYDDDDDKEDEDDEDEEANEEEDDDDVFLKSENVDVELSKMEQQQPLGYSSQPLGNPKAPEAPSELESSSEDERACEEMTSAHSSQSLEEFEECSESRSFTRGSISEEQSAPRCRSPSLQEELEEKELSTESSSYVEKYHSSEDLSSSEEEQQEVSPVSKSSLKQWSAPAKSVRPIHTSPPVVSSTTPQQPPIMVNISVGPSKPVEPLLPSHTAKSWLSPQSEHQVFSEPEGTASDWDIFMQPVSPRKALKGYYVEQNVSSSSDIVTMEEGASMEEVHLRHHSQPQTRPRLEQEVSAGPELIIFEESIDAQPSGYPPQSSVRPSIKKDISLGAESAAFEGSTSLESSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPHSQPILKPYIQQQVSAFERSVSMDPKLPTQFQPWMQPQGKQSFSSSPENTGFEGSTSVEHMTLTLSQPMSQPCQEVPLESETVAAKMMSMGQLHPKYSAQPLPSHQSQPVSESTSVEGAILVELLPPQPSVKPKFQPPMTQDPVSPSIQWSSHMEPTSAKHVFQTQANPKFKQLPVSSNSPEAQGSMSVQLVSTRCPPQPWLTPTFEQISVPPGSVPAAWAIPIYSPAPSMPSQPLIGSVVKQPAARGPMNTSVQQILTVEPKPSRYSLQSWQSTPLEQVSVPPDHAAASWSIPIDPPAPRIPSQPLMGSVFKQPTSTELVNVSVSQSSSRELLPSRFPVQPRADPEHYVPEEGVTTLRRPRRQHSQPSVISEIKEEVSSGSLRASREQSISMETIPSKYAPQPWLGPEFEQQASSLENVAKEENVLTEAWLSGHPSESIIKHKVEKTPSGFESTSVEGGMPWRPVPPTCPTPLSIRSKVQETSCRLDSATAQDSSKKSQNIRSSSQSFVKFMAQQVFSDSATSEMDTYAKPVTARGRSRPSRSLLKPKLDEHVFLYNWDDDEPKKDTKSKNLPTKPPFQSSRRPEEPQEVLALSEGVPGKWNTSVRDVSQSPGKPEYKQNVSVSASFPDEWKRSEGQLPSTQPSQAFDVAELQPPILSADSANVPVEWRIPEGHQPPGQPPQSYLITDYQQQGYGSSPNAAAEGAIPEKNIACWAMLKGPASTKNVNYGQGYRDLTKSTSTSGTKPAKLASAPAQKAFVSMGAYFKEELPQYCDVSGNPSLIPTTKGDVENVFGVRLRKISQKIGMENPDPCESFAPVSPVVSKEQADKGALQDSERGPEKSSTTFNLEEKQGNRPKYESIWKKPAVYRPPDKTSSWKADISMEPTWIAMVKQRQRGFGSHFPKKSRARSEIRAETKEPRYETKYDPEMELLSKESESVTDVTAKMTFLSTISRHEMPQSRQFIKSVAFDDQTMLQPYTRERETRRSSSLPPRFIQPQEPEWFLMAKKKAQAWSQMADLMQ", "length": 2055 }, "evidence": [ { "id": "A0A287BQ24", "url": "https://omabrowser.org/oma/group/A0A287BQ24/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ULL0-1", "protein_name": "Acrosomal protein KIAA1210", "gene_name": "KIAA1210", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRAGWTPRGFSAFHASLLPGRHPYLAHLGPRDRGARIGSRAYSQGCCSCLWLTYKGKKEGSTKGELGPAAVTDLEIPSYSRGFLPCTPRFPTTWCRGPGCFCGTAVIAGNLGDLARIVGPSHHASQLLLLQEQDSGNHPTMAESLSEISDSLDVLEAGDEGKKKCKFKALKSFFVKKKEKEAEDTQEEEMLELSLSSSNINISSLQPVRENQPTKARAKSSMGSKALSHDSIFMLGPEPERSASKMFPSMDPQRGRPQQRSHISRTLPKPRSKVPGVVSGAMSGAVLQNVPTSAVWVAGPKITENPPSRRRRLSIIPPVIQPEIISKNLVEISLDDESPKNPQKKALPHKSLTATQSFSELSSGPDCSQSLTAFATLASTSSTQLPIGFSTPATTQGCLDSSAARHKMTLNPRKQKKNLQVIIRGLPVWFSHFQGILEGSLQCVTQTLETPNLDEPLPVEPKEEEPNLPLVSEEEKSITKPKEINEKKLGMDSADSSSQKQNNKTEMYDKKTTDQAPNTDASRSQGYPMSAAYGRRWRRKGASVSGLSGCEFKGRSLKQSSEGYGLGDRAGSSPTNKTARNVPFSHLSLEKDNMEQPTTSQPETTTPQGLLSDKDDMGRRNAGIDFGSRKASAAQPIPENMDNSMVSDPQPYHEDAASGAEKTEARASLSLMVESLSTTQEEAILSVAAEAQVFMNPSHIQLEDQEAFSFDLQKAQSKMESAQDVQTICKEKPSGNVHQTFTASVLGMTSTTAKGDVYAKTLPPRSLFQSSRKPDAEEVSSDSENIPEEGDGSEELAHGHSSQSLGKFEDEQEVFSESKSFVEDLSSSEEELDLRCLSQALEEPEDAEVFTESSSYVEKYNTSDDCSSSEEDLPLRHPAQALGKPKNQQEVSSASNNTPEEQNDFMQQLPSRCPSQPIMNPTVQQQVPTSSVGTSIKQSDSVEPIPPRHPFQPWVNPKVEQEVSSSPKSMAVEESISMKPLPPKLLCQPLMNPKVQQNMFSGSEDIAVERVISVEPLLPRYSPQSLTDPQIRQISESTAVEEGTYVEPLPPRCLSQPSERPKFLDSMSTSAEWSSPVAPTPSKYTSPPWVTPKFEELYQLSAHPESTTVEEDISKEQLLPRHLSQLTVGNKVQQLSSNFERAAIEADISGSPLPPQYATQFLKRSKVQEMTSRLEKMAVEGTSNKSPIPRRPTQSFVKFMAQQIFSESSALKRGSDVAPLPPNLPSKSLSKPEVKHQVFSDSGSANPKGGISSKMLPMKHPLQSLGRPEDPQKVFSYSERAPGKCSSFKEQLSPRQLSQALRKPEYEQKVSPVSASSPKEWRNSKKQLPPKHSSQASDRSKFQPQMSSKGPVNVPVKQSSGEKHLPSSSPFQQQVHSSSVNAAARRSVFESNSDNWFLGRDEAFAIKTKKFSQGSKNPIKSIPAPATKPGKFTIAPVRQTSTSGGIYSKKEDLESGDGNNNQHANLSNQDDVEKLFGVRLKRAPPSQKYKSEKQDNFTQLASVPSGPISSSVGRGHKIRSTSQGLLDAAGNLTKISYVADKQQSRPKSESMAKKQPACKTPGKPAGQQSDYAVSEPVWITMAKQKQKSFKAHISVKELKTKSNAGADAETKEPKYEGAGSANENQPKKMFTSSVHKQEKTAQMKPPKPTKSVGFEAQKILQVPAMEKETKRSSTLPAKFQNPVEPIEPVWFSLARKKAKAWSHMAEITQ", "length": 1709 }, "evidence": [ { "id": "A0A287BQ24", "url": "https://omabrowser.org/oma/group/A0A287BQ24/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1369, "end_pos": 1371, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1427, "end_pos": 1429, "annotation": "n_glycosylation_sequon" }, { "start_pos": 290, "end_pos": 292, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1387 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 117, "end_pos": 119 }, { "start_pos": 1369, "end_pos": 1371 }, { "start_pos": 1427, "end_pos": 1429 }, { "start_pos": 290, "end_pos": 292 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BQ31-1", "uniprot_ac": "A0A287BQ31", "uniprot_id": "A0A287BQ31_PIG", "mass": { "chemical_mass": 20185.0, "monoisotopic_mass": 20185.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A287BQ31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ31/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BQ31", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ31" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ31", "locus": {} } ], "crossref": [ { "id": "A0A287BQ31", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BQ31", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000045541", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045541", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05769", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05769", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003597", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003597", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050380", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050380", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23411", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23411", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07654", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07654", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-198933", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-202424", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202424", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-202427", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202427", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-202430", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202430", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-202433", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202433", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-389948", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-389948", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BQ31", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQ31-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "DLQQVRPPKVAVFEPSEAEISRTQKATLVCLATGFYPDHVELSWWVNGKQVQSGVSTDLQPYREDPSRNDSSYCLSSRLRVTAAFWHNPRNHFRCQVQFYGLTEDDEWEYNWTKPITQNISAEAWGKADCGFSSASYQQGVLSATLLYEILLGKATLYAVLVSALVLMATVRRRAGGGSD", "length": 180, "header": "tr|A0A287BQ31-1|A0A287BQ31_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287BQ31-1" }, "isoforms": [ { "isoform_ac": "A0A287BQ31-1", "url": 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"MAAVYSGISLKLKSKTTSWEDKLKLAHFAWISHQCVLPNKEQVLLDWARQSLVAFYKKKLELKEDIVERLWIYIDNILHSRKLQDLLKNGKTINLQISLIKILNERAAEFSLSGSQRNIGAVLSCCQGILSTPALAVIYTARQELVVDLLSQLCWSACRQPEAAMIPQLFEVIHLTLGHYLSIQQQQVNPRRAFGEVTGHLLQPCLVLRHLLLGGTWTQAGQGQLRPALGRDVRNQIEAMLRGGVFQPELLSSYKEELLEQQQSDTKMGAMKNLLTPMGTVTAGLVDPGYCEPALHAAVVASSVALLYKLFIDALPRLFGCLRVSQLQEKQIKVLSASDWTTELLVLEQLLNSVASNNIYNIAADKIRHGEAQFHFYRHLAELLINHSQAPVPAWFRCLRVLMSLNHLILEPDLDDLLASAWVDAEVMECRTKKAQEVLVHTLFQTYARLRQAPRLFQELLGVMCRPAAEALRQPMLAVGPCTALRECLLELPPSQVLDTWDLVLERFQALVLPHLRGDADMAWKSLSLSSLLHCVMVHARVLDSSAPLPVVRRLQRTMEGMLQDLVKPLLDLLQEPQCSAPELWCQKVSDSALLLAHTWAQVDTVLGLSCSHYHAAAEPSSLPSLLPGVESQCWKKVEEFTVQFKSLGRYCFEQLHLQKMKKTLMQMSFQSAEALHALRQDAAYILDSGRASLTLGTAASWDGQVGTVSALTYPVAHWHLVVSNLPILISYLCPDDVRYVASILLRTLPVSKAQEDLAEEEADLTLGKISQAVLHSPLFPEMQSLHSAFFLCLAARCSSVLRSSAQENPTLLRQQLPWLFEEDHVVVAPWEDRFSKVVSEGAELRGEIAHNLLSLVRGDLCIQLEGEQLERLLGLLEVVSSLQLDSLSPPDHMHCFLLLLSTAVTTLGSSCPSSLALRFLVTCYQLLGYLQRGKSAQSALRTMYVSDVFEVTLTSLFRGSRRLLVDMDDPSWLEFLQVIGTFLEHLLQMLIQRKLSPGLNFGKIIAFLSRDDLCTEATSGKQGESQNPLGQQLLLVSLTRLCQVLGPLVREQRQHDEALEALPELLQQAVLQTGAVLQLCVAGRAQGRRLPSTIIASVSALLEADVAQRSTCSGAEVPRVTDGMLLPNSALYQTVYSQILSELPALAGDTLSLQAAVQFLTLFSLAPELHPKKESVFTSVFHSVRKVLADPTIPVQVVEDIEPHLGALFTQMLDVGTTEDFRLALQHILQGLDVSNTWKADQQVVLSAVTLIKLLLSCTLSGEKAGLFWRACPQMITALTLQTREACQEQPAALVVVGPVLDVLAGLLRQGEGAIGNPHHVSLAFGILLTVPLDHLKPPEYGRIFPRVHNVLFSVLQCHPKVMLKAIPSFLNCFNRLVFSVIHEGRQKDKGGPDDLPVVLECARLVQRMYSHVAARAEEFRVFSPFMVAQYVTEVQKVTLYPSVKGLLQEGIYLVLDLCLERDIQFLRVSLQPGVRDVFKELYGDYVKYHKAKHEGEKRYTV", "length": 1503, "header": "tr|A0A287BQ67-1|A0A287BQ67_PIG Isoform 1 of URB2 ribosome biosis homolog OS=Sus scrofa OX=9823 GN=URB2 PE=4 SV=2 CANONICAL=A0A287BQ67-1" }, "isoforms": [ { "isoform_ac": "A0A287BQ67-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ67/entry#A0A287BQ67-1", "sequence": { "sequence": "MAAVYSGISLKLKSKTTSWEDKLKLAHFAWISHQCVLPNKEQVLLDWARQSLVAFYKKKLELKEDIVERLWIYIDNILHSRKLQDLLKNGKTINLQISLIKILNERAAEFSLSGSQRNIGAVLSCCQGILSTPALAVIYTARQELVVDLLSQLCWSACRQPEAAMIPQLFEVIHLTLGHYLSIQQQQVNPRRAFGEVTGHLLQPCLVLRHLLLGGTWTQAGQGQLRPALGRDVRNQIEAMLRGGVFQPELLSSYKEELLEQQQSDTKMGAMKNLLTPMGTVTAGLVDPGYCEPALHAAVVASSVALLYKLFIDALPRLFGCLRVSQLQEKQIKVLSASDWTTELLVLEQLLNSVASNNIYNIAADKIRHGEAQFHFYRHLAELLINHSQAPVPAWFRCLRVLMSLNHLILEPDLDDLLASAWVDAEVMECRTKKAQEVLVHTLFQTYARLRQAPRLFQELLGVMCRPAAEALRQPMLAVGPCTALRECLLELPPSQVLDTWDLVLERFQALVLPHLRGDADMAWKSLSLSSLLHCVMVHARVLDSSAPLPVVRRLQRTMEGMLQDLVKPLLDLLQEPQCSAPELWCQKVSDSALLLAHTWAQVDTVLGLSCSHYHAAAEPSSLPSLLPGVESQCWKKVEEFTVQFKSLGRYCFEQLHLQKMKKTLMQMSFQSAEALHALRQDAAYILDSGRASLTLGTAASWDGQVGTVSALTYPVAHWHLVVSNLPILISYLCPDDVRYVASILLRTLPVSKAQEDLAEEEADLTLGKISQAVLHSPLFPEMQSLHSAFFLCLAARCSSVLRSSAQENPTLLRQQLPWLFEEDHVVVAPWEDRFSKVVSEGAELRGEIAHNLLSLVRGDLCIQLEGEQLERLLGLLEVVSSLQLDSLSPPDHMHCFLLLLSTAVTTLGSSCPSSLALRFLVTCYQLLGYLQRGKSAQSALRTMYVSDVFEVTLTSLFRGSRRLLVDMDDPSWLEFLQVIGTFLEHLLQMLIQRKLSPGLNFGKIIAFLSRDDLCTEATSGKQGESQNPLGQQLLLVSLTRLCQVLGPLVREQRQHDEALEALPELLQQAVLQTGAVLQLCVAGRAQGRRLPSTIIASVSALLEADVAQRSTCSGAEVPRVTDGMLLPNSALYQTVYSQILSELPALAGDTLSLQAAVQFLTLFSLAPELHPKKESVFTSVFHSVRKVLADPTIPVQVVEDIEPHLGALFTQMLDVGTTEDFRLALQHILQGLDVSNTWKADQQVVLSAVTLIKLLLSCTLSGEKAGLFWRACPQMITALTLQTREACQEQPAALVVVGPVLDVLAGLLRQGEGAIGNPHHVSLAFGILLTVPLDHLKPPEYGRIFPRVHNVLFSVLQCHPKVMLKAIPSFLNCFNRLVFSVIHEGRQKDKGGPDDLPVVLECARLVQRMYSHVAARAEEFRVFSPFMVAQYVTEVQKVTLYPSVKGLLQEGIYLVLDLCLERDIQFLRVSLQPGVRDVFKELYGDYVKYHKAKHEGEKRYTV", "length": 1503, "header": "tr|A0A287BQ67-1|A0A287BQ67_PIG Isoform 1 of URB2 ribosome biosis homolog OS=Sus scrofa OX=9823 GN=URB2 PE=4 SV=2 CANONICAL=A0A287BQ67-1" }, "locus": { "chromosome": "14", "start_pos": 60252905, "end_pos": 60229506, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056597.2", "url": "https://www.ensembl.org/id/ENSSSCT00000056597.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058253.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058253.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BQ67", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ67" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A287BQ67", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ67" } ], "pmid": "" }, { "name": "midbody", "id": "GO:0030496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030496", "evidence": [ { "database": "UniProtKB", "id": "A0A287BQ67", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ67" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "ribosome biogenesis", "id": "GO:0042254", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042254", "evidence": [ { "database": "UniProtKB", "id": "A0A287BQ67", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ67" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 386, "end_pos": 388, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BQ67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ67" }, { "id": "PF10441", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10441" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nucleolar 27S pre-rRNA processing Urb2/Npa2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 1301, "end_pos": 1495, "start_aa": "Val", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 386, "end_pos": 388 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BQ70-1", "uniprot_ac": "A0A287BQ70", "uniprot_id": "A0A287BQ70_PIG", "mass": { "chemical_mass": 44712.0, "monoisotopic_mass": 44712.0 }, "refseq": { "ac": "XP_020954667", "name": "F-box only protein 22", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954667" }, "gene_names": [ { "name": "FBXO22", "type": "recommended", "evidence": [ { "id": "A0A287BQ70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ70" } ] }, { "name": "FBXO22", "type": "synonym", "evidence": [ { "id": "XP_020954667", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954667" } ] } ], "protein_names": [ { "name": "F-box only protein 22", "type": "synonym", "evidence": [ { "id": "XP_020954667", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954667" } ] }, { "name": "F-box protein 22", "type": "synonym", "evidence": [ { "id": "A0A287BQ70", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ70/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BQ70", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ70" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBXO22", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ70", "locus": { "chromosome": "7", "start_pos": 56186317, "end_pos": 56146880, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000061790", "url": "https://www.ensembl.org/id/ENSSSCG00000061790" } ] } } ], "crossref": [ { "id": "ENSSSCG00000027457", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027457", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22097", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22097", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154262", "url": "https://www.ncbi.nlm.nih.gov/gene/100154262", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154262", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154262", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BQ70", "url": "https://www.orthodb.org/?gene=A0A287BQ70", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14939", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14939", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14939:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14939:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10442", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10442", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020954667", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954667", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BQ70", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQ70-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RM42", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RM42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RM42-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RM42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERVSGGCDRRGSSSADPRSTFVLSNLAEVVERVLTFLPAKALLRVAGVCRLWRECVRRVLRTHQSVTWISTGSGDAGLLEEHCLVRVVTEELENVHILPRTVLYMADSETFISLEECRGHKRARKRTTMEAAFALEKLFPKQCQILGIVTPGIVVTPMGSSSSRPQEIEIGESGFALLFPQIEGIKIQPFHFIKDPKKLTLERQQLTEVGLLDNPELRVVLVFGYNCCKAGASNYLQRVVSTFSDMNVILAGGQVDNLASLTSEKNPLDIDATGVVGLSFSGHRIQSATVLLNEDVNDEKTAEAAMQRLKAANIPEQNTIGFMFACVGRGFQYYRAKGNVEADAFRKFFPRVPLFGFFGNGEIGCDRIVTGNFILKKCNKVKDDDLFHSYTTIMALIHLGSSK", "length": 404, "header": "tr|A0A287BQ70-1|A0A287BQ70_PIG Isoform 1 of F-box protein 22 OS=Sus scrofa OX=9823 GN=FBXO22 PE=4 SV=1 CANONICAL=A0A287BQ70-1" }, "isoforms": [ { "isoform_ac": "A0A287BQ70-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ70/entry#A0A287BQ70-1", "sequence": { "sequence": 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May bind to specific miRNA hairpins.", "evidence": [ { "database": "UniProtKB", "id": "A0A480LAI1", "url": "https://www.uniprot.org/uniprotkb/A0A480LAI1#function" }, { "database": "UniProtKB", "id": "ARBA00093437", "url": "https://www.uniprot.org/uniprotkb/ARBA00093437#function" }, { "database": "UniProtKB", "id": "K7GNC8", "url": "https://www.uniprot.org/uniprotkb/K7GNC8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480LAI1", "url": "https://www.uniprot.org/uniprotkb/A0A480LAI1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RBM10", "url": "https://www.uniprot.org/uniprotkb/A0A480LAI1", "locus": { "chromosome": "X", "start_pos": 41803653, "end_pos": 41773232, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012271", "url": "https://www.ensembl.org/id/ENSSSCG00000012271" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012271", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012271", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12753", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12753", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12754", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12754", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16167", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16167", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525622", "url": "https://www.ncbi.nlm.nih.gov/gene/100525622", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001876", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001876", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035618", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035618", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13948", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13948", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13948:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13948:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00641", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00641", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01585", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01585", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17780", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17780", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-72163", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72203", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72203", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9770562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020936032", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936032", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480LAI1", "url": "https://www.uniprot.org/uniprotkb/A0A480LAI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480LAI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480LAI1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GNC8", "url": "https://www.uniprot.org/uniprotkb/K7GNC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GNC8-1", "url": "https://www.uniprot.org/uniprotkb/K7GNC8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEYERRGGRGDRTGRYGAADRSQDDGGENRSRDHDYRDMDYRSYPREYGGQEGKHDYDDSSEEQSAEIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGARLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRINAASVASTAIAAAQWAISQASQGGEGAWATPEEPPVDYSYYQQDEGYGGSQGTESSLYAHGYLKGAKGPGITGTKGDPSGAGPEASLEPGADSVSLQAFSRAQPGATPGVYQQSAAEASGGQGAATNSQSYTIMSPAVLKSELQSPTHPSSSLPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGGMSAASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ", "length": 854, "header": "tr|A0A480LAI1-1|A0A480LAI1_PIG Isoform 1 of RNA-binding protein 10 OS=Sus scrofa OX=9823 GN=RBM10 PE=1 SV=1 CANONICAL=A0A480LAI1-1" }, "isoforms": [ { "isoform_ac": "A0A480LAI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480LAI1/entry#A0A480LAI1-1", "sequence": { "sequence": "MEYERRGGRGDRTGRYGAADRSQDDGGENRSRDHDYRDMDYRSYPREYGGQEGKHDYDDSSEEQSAEIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGARLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRINAASVASTAIAAAQWAISQASQGGEGAWATPEEPPVDYSYYQQDEGYGGSQGTESSLYAHGYLKGAKGPGITGTKGDPSGAGPEASLEPGADSVSLQAFSRAQPGATPGVYQQSAAEASGGQGAATNSQSYTIMSPAVLKSELQSPTHPSSSLPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGGMSAASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ", "length": 854, "header": "tr|A0A480LAI1-1|A0A480LAI1_PIG Isoform 1 of RNA-binding protein 10 OS=Sus scrofa OX=9823 GN=RBM10 PE=1 SV=1 CANONICAL=A0A480LAI1-1" }, "locus": { "chromosome": "X", "start_pos": 41803431, "end_pos": 41776322, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013419.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013419.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013059.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013059.4" } ] } }, { "isoform_ac": "K7GNC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480LAI1/entry#K7GNC8-1", "sequence": { "sequence": "MEYERRGGRGDRTGRYGAADRSQDDGGENRSRDHDYRDMDYRSYPREYGGQEGKHDYDDSSEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEDEEEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGARLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRINAASVASTAIAAAQWAISQASQGGEGAWATPEEPPVDYSYYQQDEGYGGSQGTESSLYAHGYLKGAKGPGITGTKGDPSGAGPEASLEPGADSVSLQAFSRAQPGATPGVYQQSAAEASGGQGAATNSQSYTIMSPAVLKSELQSPTHPSSSLPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGGMSAASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ", "length": 931, "header": "tr|K7GNC8-1|A0A480LAI1_PIG Computationally mapped isoform of RNA-binding protein 10 OS=Sus scrofa OX=9823 GN=RBM10 PE=1 SV=3 CANONICAL=A0A480LAI1-1" }, "locus": { "chromosome": "X", "start_pos": 41803431, "end_pos": 41776322, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036244.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036244.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029380.3", "url": "https://www.ensembl.org/id/ENSSSCP00000029380.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 427, "start_aa": "Thr", "end_pos": 427, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr427", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "K7GNC8", "url": "https://www.uniprot.org/uniprotkb/K7GNC8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-72163", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "resource": "Reactome", "description": "mRNA Splicing - Major Pathway" }, { "id": "R-SSC-72203", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72203", "resource": "Reactome", "description": "Processing of Capped Intron-Containing Pre-mRNA" }, { "id": "R-SSC-9770562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "resource": "Reactome", "description": "mRNA Polyadenylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A480LAI1", "url": "https://www.uniprot.org/uniprotkb/A0A480LAI1" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A480LAI1", "url": "https://www.uniprot.org/uniprotkb/A0A480LAI1" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A480LAI1", "url": "https://www.uniprot.org/uniprotkb/A0A480LAI1" } ], "pmid": "" }, { "name": "miRNA binding", "id": "GO:0035198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035198", "evidence": [ { "database": "UniProtKB", "id": "A0A480LAI1", "url": "https://www.uniprot.org/uniprotkb/A0A480LAI1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480LAI1", "url": "https://www.uniprot.org/uniprotkb/A0A480LAI1" } ], "pmid": "" }, { "name": "nuclear speck", 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"https://www.uniprot.org/uniprotkb/A0A287BS98" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS98", "url": "https://www.uniprot.org/uniprotkb/A0A287BS98" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS98", "url": "https://www.uniprot.org/uniprotkb/A0A287BS98" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS98", "url": "https://www.uniprot.org/uniprotkb/A0A287BS98" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS98", "url": "https://www.uniprot.org/uniprotkb/A0A287BS98" } ], "pmid": "" }, { "name": "nucleotide-activated protein kinase complex", "id": "GO:0031588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031588", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS98", "url": "https://www.uniprot.org/uniprotkb/A0A287BS98" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "regulation of glycolytic process", "id": "GO:0006110", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006110", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS98", "url": "https://www.uniprot.org/uniprotkb/A0A287BS98" } ], "pmid": "" }, { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS98", "url": "https://www.uniprot.org/uniprotkb/A0A287BS98" } ], "pmid": "" }, { "name": "glycogen metabolic process", "id": "GO:0005977", "url": 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gluconeogenesis", "id": "GO:0045722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045722", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS98", "url": "https://www.uniprot.org/uniprotkb/A0A287BS98" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" }, { "start_pos": 360, "end_pos": 362, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BS98-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 566, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BS98-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BS98" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BS98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BS98" }, { "id": "PS51371", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51371" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CBS", "eco_id": "ECO_0000259", "start_pos": 272, "end_pos": 332, "start_aa": "Pro", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 26, "end_pos": 28 }, { "start_pos": 360, "end_pos": 362 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"monoisotopic_mass": 38417.0 }, "refseq": {}, "gene_names": [ { "name": "CCNY", "type": "recommended", "evidence": [ { "id": "A0A287BRS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BRS3" } ] } ], "protein_names": [ { "name": "Cyclin Y", "type": "synonym", "evidence": [ { "id": "A0A287BRS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BRS3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BRS3", "url": "https://www.uniprot.org/uniprotkb/A0A287BRS3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCNY", "url": "https://www.uniprot.org/uniprotkb/A0A287BRS3", "locus": { "chromosome": "10", "start_pos": 58086872, "end_pos": 57929244, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011107", "url": "https://www.ensembl.org/id/ENSSSCG00000011107" } ] } } ], "crossref": [ { "id": "A0A287BRS3", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BRS3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011107", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011107", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20540", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20540", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR006671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012399", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012399", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14248", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14248", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00134", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00134", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZKM2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZKM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZKM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZKM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRS3", "url": "https://www.uniprot.org/uniprotkb/A0A287BRS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMB6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMB6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLM6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLM6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUR3", "url": "https://www.uniprot.org/uniprotkb/F1RUR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUR3-1", "url": "https://www.uniprot.org/uniprotkb/F1RUR3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNTASCCVSSSPKLRRNAHSRLESCRPDADLSREDTGCNLQHISDRENIDDLNMEFNPSDHPRASTIFLSKSQTDVREKRKSLFINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDIFDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEIQERPPGAITALREDSGSVTLFRGCTGSCVIHSS", "length": 337, "header": "tr|A0A287BRS3-1|A0A287BRS3_PIG Isoform 1 of Cyclin Y OS=Sus scrofa OX=9823 GN=CCNY PE=1 SV=1 CANONICAL=A0A287BRS3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZKM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRS3/entry#A0A286ZKM2-1", "sequence": { "sequence": "MGNTASCCVSSSPKLRRNAHSRLESCRPDADLSREDTGCNLQHISDRENIDGKAGGRAGVSRIPPAPRAAGPRAPHPAPRPAAVALGRSPRAGRGLRPGGPAGAGSRPGSGRLSGRASRLPSCAPKDLNMEFNPSDHPRASTIFLSKSQTDVREKRKSLFINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDIFDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRPTRKRSASADNLTLPRWSPAILS", "length": 416, "header": "tr|A0A286ZKM2-1|A0A287BRS3_PIG Computationally mapped isoform of Cyclin Y OS=Sus scrofa OX=9823 GN=CCNY PE=1 SV=1 CANONICAL=A0A287BRS3-1" }, "locus": { "chromosome": "10", "start_pos": 58054884, "end_pos": 57929601, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047984.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047984.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032005.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032005.2" } ] } }, { "isoform_ac": "A0A287BRS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRS3/entry#A0A287BRS3-1", "sequence": { "sequence": "MGNTASCCVSSSPKLRRNAHSRLESCRPDADLSREDTGCNLQHISDRENIDDLNMEFNPSDHPRASTIFLSKSQTDVREKRKSLFINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDIFDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEIQERPPGAITALREDSGSVTLFRGCTGSCVIHSS", "length": 337, "header": "tr|A0A287BRS3-1|A0A287BRS3_PIG Isoform 1 of Cyclin Y OS=Sus scrofa OX=9823 GN=CCNY PE=1 SV=1 CANONICAL=A0A287BRS3-1" }, "locus": { "chromosome": "10", "start_pos": 58086869, "end_pos": 57929601, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047162.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047162.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059133.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059133.1" } ] } }, { "isoform_ac": "A0A5G2QAJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRS3/entry#A0A5G2QAJ7-1", "sequence": { "sequence": "MGNTASCCVSSSPKLRRNAHSRLESCRPDADLSREDTGCNLQHISDRENIDGKAGGRAGVSRIPPAPRAAGPRAPHPAPRPAAVALGRSPRAGRGLRPGGPAGAGSRPGSGRLSGRASRLPSCAPKDLNMEFNPSDHPRASTIFLSKSQTDARKYSSCSTIFLDDSTVSQPNLKYTIKWDPDGRMLLDIFDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEVRGASAPGAGAFLRSVFIE", "length": 367, "header": "tr|A0A5G2QAJ7-1|A0A287BRS3_PIG Computationally mapped isoform of Cyclin Y OS=Sus scrofa OX=9823 GN=CCNY PE=1 SV=2 CANONICAL=A0A287BRS3-1" }, "locus": { "chromosome": "10", "start_pos": 58051277, "end_pos": 57929601, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075391.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075391.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061417.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061417.2" } ] } }, { "isoform_ac": "A0A5G2QMB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRS3/entry#A0A5G2QMB6-1", "sequence": { "sequence": "MGNTASCCVSSSPKLRRNAHSRLESCRPDADLSREDTGCNLQHISDRENIDDLNMEFNPSDHPRASTIFLSKSQTDVREKRKSLFINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDIFDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEVRGASAPGAGALWCLSSAPRRFLPLCRCQTGTGVLGPIGATSHF", "length": 347, "header": "tr|A0A5G2QMB6-1|A0A287BRS3_PIG Computationally mapped isoform of Cyclin Y OS=Sus scrofa OX=9823 GN=CCNY PE=1 SV=1 CANONICAL=A0A287BRS3-1" }, "locus": { "chromosome": "10", "start_pos": 58051245, "end_pos": 57929601, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083721.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083721.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065753.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065753.1" } ] } }, { "isoform_ac": "A0A8W4FLM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRS3/entry#A0A8W4FLM6-1", "sequence": { "sequence": "MGNTASCCVSSSPKLRRNAHSRLESCRPDADLSREDTGCNLQHISDRENIDDLNMEFNPSDHPRASTIFLSKSQTDARKYSSCSTIFLDDSTVSQPNLKYTIKWDPDGRMLLDIFDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEVRGASAPGAGALWCLSSAPRRFLPLCRCQTGTGVLGPIGATSHF", "length": 317, "header": "tr|A0A8W4FLM6-1|A0A287BRS3_PIG Computationally mapped isoform of Cyclin Y OS=Sus scrofa OX=9823 GN=CCNY PE=1 SV=1 CANONICAL=A0A287BRS3-1" }, "locus": { "chromosome": "10", "start_pos": 58051245, "end_pos": 57929601, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103316.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103316.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080244.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080244.1" } ] } }, { "isoform_ac": "F1RUR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRS3/entry#F1RUR3-1", "sequence": { "sequence": "MGNTASCCVSSSPKLRRNAHSRLESCRPDADLSREDTGCNLQHISDRENIDVREKRKSLFINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDIFDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRPTRKRSASADNLTLPRWSPAILS", "length": 316, "header": "tr|F1RUR3-1|A0A287BRS3_PIG Computationally mapped isoform of Cyclin Y OS=Sus scrofa OX=9823 GN=CCNY PE=1 SV=4 CANONICAL=A0A287BRS3-1" }, "locus": { "chromosome": "10", "start_pos": 58054884, "end_pos": 57929601, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012155.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012155.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011845.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011845.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAJ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRS3", "url": "https://www.uniprot.org/uniprotkb/A0A287BRS3" } ], "pmid": "" }, { "name": "cyclin-dependent protein serine/threonine kinase activator activity", "id": "GO:0061575", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061575", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRS3", "url": "https://www.uniprot.org/uniprotkb/A0A287BRS3" } ], "pmid": "" }, { "name": "cyclin-dependent protein serine/threonine kinase regulator activity", "id": "GO:0016538", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016538", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRS3", "url": "https://www.uniprot.org/uniprotkb/A0A287BRS3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": 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D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXT4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXT4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SI91", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SI91" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BRM8-1", "uniprot_ac": "A0A287BRM8", "uniprot_id": "A0A287BRM8_PIG", "mass": { "chemical_mass": 108226.0, "monoisotopic_mass": 108226.0 }, "refseq": {}, "gene_names": [ { "name": "GRIP1", "type": "recommended", "evidence": [ { "id": "A0A287BRM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BRM8" } ] } ], "protein_names": [ { "name": "Glutamate receptor interacting protein 1", "type": "synonym", "evidence": [ { "id": "A0A287BRM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BRM8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BRM8", "url": "https://www.uniprot.org/uniprotkb/A0A287BRM8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GRIP1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRM8", "locus": { "chromosome": "5", "start_pos": 30697040, "end_pos": 31020901, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000478", "url": "https://www.ensembl.org/id/ENSSSCG00000000478" } ] } } ], "crossref": [ { "id": "A0A287BRM8", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BRM8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000478", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000478", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06681", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06681", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06682", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06682", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06683", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06683", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06684", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06684", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06685", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06685", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06686", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06686", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06687", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06687", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041489", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041489", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46227", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46227", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46227:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46227:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17820", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17820", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-416993", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416993", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZJZ0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZJZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZJZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZJZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRM8", "url": "https://www.uniprot.org/uniprotkb/A0A287BRM8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRM8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXX1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXX1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH70", "url": "https://www.uniprot.org/uniprotkb/F1SH70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH70-1", "url": "https://www.uniprot.org/uniprotkb/F1SH70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GMX8", "url": "https://www.uniprot.org/uniprotkb/K7GMX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GMX8-1", "url": "https://www.uniprot.org/uniprotkb/K7GMX8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSVQGSGVIFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMDSVATASGPLLVEVAKTPGASLGVALTTSMCCNKQVIVIDKIKSASIADRCGALHVGDHILSIDGTSMEYCTLAEATQFLANTTDQVKLEILPHHQTRLALKGPDHAALVSSSFSPTSMSAYSLSSLNMGTLPRSLYSTSPRGTMMRRRLKKKDFKSSLSLASSTVGLAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVLAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHNVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDNCSMEDAVQILQQCEDLVKLKIRKDEDNSDEQESSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQSASSPKKFPVSSHLSDLGDVEEDPSPAQKPGKLTDMYPSTVPSVDSAVDSWDGSGIDASYGNQGTGFQASGYNFNTYDWRSPKQRGSLSPVTKPRSQTYPDVGLSNEDWDRSTVSGFAGAPDSTEAEQEENFWSQALEDLETCGQSGILRELEATIMSGSTMSLNHEAPTPRSQLGRQASFQERSSSRPHYSQTTRSNTLPSDVGRKSVTLRKMKQEIKEIMSPTPVELHKVTLYKGSEMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNPLASQKSTEQTLPGGEWSEQNSAFFQQPSHGGNLEIREPTNTL", "length": 1005, "header": "tr|A0A287BRM8-1|A0A287BRM8_PIG Isoform 1 of Glutamate receptor interacting protein 1 OS=Sus scrofa OX=9823 GN=GRIP1 PE=1 SV=3 CANONICAL=A0A287BRM8-1" }, "isoforms": [ { "isoform_ac": "A0A286ZJZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRM8/entry#A0A286ZJZ0-1", "sequence": { "sequence": "MEINQTLHCTFADESPYTKSASQTKPPDGALAVRRQSIPEEFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSVQGSGVIFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMDSVATASGPLLVEVAKTPGASLGVALTTSMCCNKQVIVIDKIKSASIADRCGALHVGDHILSIDGTSMEYCTLAEATQFLANTTDQVKLEILPHHQTRLALKGPDHVRIQRSDRQLTWDSWASNHCSLHTYHHYNTYHPDHCRAPALTFPKAPPPNSPPALVSSSFSPTSMSAYSLSSLNMGTLPRSLYSTSPRGTMMRRRLKKKDFKSSLSLASSTVGLAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVLAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHNVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDNCSMEDAVQILQQCEDLVKLKIRKDEDNSDEQESSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQSASSPKKFPVSSHLSDLGDVEEDPSPAQKPGKLTDMYPSTVPSVDSAVDSWDGSGIDASYGNQGRLISMGLGSSKGDKVSAGDGTGFQASGYNFNTYDWRSPKQRGSLSPVTKPRSQTYPDVGLSNEDWDRSTVSGSFAGAPDSTEAEQEENFWSQALEDLETCGQSGILRELEEKADRRVSLRNMTLLATIMSGSTMSLNHEAPTPRSQLGRQASFQERSSSRPHYSQTTRSNTLPSDVGRKSVTLRKMKQEIKEIMSPTPVELHKVTLYKGSEMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNPLASQKSTEQTLPGGEWSEQNSAFFQQPSHGGNLEIREPTNTL", "length": 1143, "header": "tr|A0A286ZJZ0-1|A0A287BRM8_PIG Computationally mapped isoform of Glutamate receptor interacting protein 1 OS=Sus scrofa OX=9823 GN=GRIP1 PE=1 SV=2 CANONICAL=A0A287BRM8-1" }, "locus": { "chromosome": "5", "start_pos": 30926004, "end_pos": 30698589, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062302.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062302.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031880.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031880.2" } ] } }, { "isoform_ac": "A0A287BRM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRM8/entry#A0A287BRM8-1", "sequence": { "sequence": "MKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSVQGSGVIFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMDSVATASGPLLVEVAKTPGASLGVALTTSMCCNKQVIVIDKIKSASIADRCGALHVGDHILSIDGTSMEYCTLAEATQFLANTTDQVKLEILPHHQTRLALKGPDHAALVSSSFSPTSMSAYSLSSLNMGTLPRSLYSTSPRGTMMRRRLKKKDFKSSLSLASSTVGLAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVLAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHNVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDNCSMEDAVQILQQCEDLVKLKIRKDEDNSDEQESSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQSASSPKKFPVSSHLSDLGDVEEDPSPAQKPGKLTDMYPSTVPSVDSAVDSWDGSGIDASYGNQGTGFQASGYNFNTYDWRSPKQRGSLSPVTKPRSQTYPDVGLSNEDWDRSTVSGFAGAPDSTEAEQEENFWSQALEDLETCGQSGILRELEATIMSGSTMSLNHEAPTPRSQLGRQASFQERSSSRPHYSQTTRSNTLPSDVGRKSVTLRKMKQEIKEIMSPTPVELHKVTLYKGSEMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNPLASQKSTEQTLPGGEWSEQNSAFFQQPSHGGNLEIREPTNTL", "length": 1005, "header": "tr|A0A287BRM8-1|A0A287BRM8_PIG Isoform 1 of Glutamate receptor interacting protein 1 OS=Sus scrofa OX=9823 GN=GRIP1 PE=1 SV=3 CANONICAL=A0A287BRM8-1" }, "locus": { "chromosome": "5", "start_pos": 30880464, "end_pos": 30698589, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064279.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064279.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059298.3", "url": "https://www.ensembl.org/id/ENSSSCP00000059298.3" } ] } }, { "isoform_ac": "A0A5G2QXX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRM8/entry#A0A5G2QXX1-1", "sequence": { "sequence": "MDIAAHFEKAMAKSVKKHHSSTPESTVPASLILNSIAFNIDGSIQYKKKPYSSASEALEAYIDDFHLNCELPDINDTKVNLDQSPLEFLAKLNSDESPYTKSASQTKPPDGALAVRRQSIPEEFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSVQGSGVIFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMDSVATASGPLLVEVAKTPGASLGVALTTSMCCNKQVIVIDKIKSASIADRCGALHVGDHILSIDGTSMEYCTLAEATQFLANTTDQVKLEILPHHQTRLALKGPDHVRIQRSDRQLTWDSWASNHCSLHTYHHYNTYHPDHCRAPALTFPKAPPPNSPPALVSSSFSPTSMSAYSLSSLNMGTLPRSLYSTSPRGTMMRRRLKKKDFKSSLSLASSTVGLAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVLAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHNVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDNCSMEDAVQILQQCEDLVKLKIRKDEDNSDEQESSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQSASSPKKFPVSSHLSDLGDVEEDPSPAQKPGKLTDMYPSTVPSVDSAVDSWDGSGIDASYGNQGRLISMGLGSSKGDKVSAGDGTGFQASGYNFNTYDWRSPKQRGSLSPVTKPRSQTYPDVGLSNEDWDRSTVSGSFAGAPDSTEAEQEENFWSQALEDLETCGQSGILRELEATIMSGSTMSLNHEAPTPRSQLGRQASFQERSSSRPHYSQTTRSNTLPSDVGRKSVTLRKMKQEIKEIMSPTPVELHKVTLYKGSEMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNPLASQKSTEQTLPGGEWSEQNSAFFQQPSHGGNLEIREPTNTL", "length": 1210, "header": "tr|A0A5G2QXX1-1|A0A287BRM8_PIG Computationally mapped isoform of Glutamate receptor interacting protein 1 OS=Sus scrofa OX=9823 GN=GRIP1 PE=1 SV=1 CANONICAL=A0A287BRM8-1" }, "locus": { "chromosome": "5", "start_pos": 30979763, "end_pos": 30698589, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075831.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075831.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063052.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063052.1" } ] } }, { "isoform_ac": "F1SH70-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRM8/entry#F1SH70-1", "sequence": { "sequence": "MQVQSLALLSGLKIQSNAFLLTEEFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSVQGSGVIFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMDSVATASGPLLVEVAKTPGASLGVALTTSMCCNKQVIVIDKIKSASIADRCGALHVGDHILSIDGTSMEYCTLAEATQFLANTTDQVKLEILPHHQTRLALKGPDHAALVSSSFSPTSMSAYSLSSLNMGTLPRSLYSTSPRGTMMRRRLKKKDFKSSLSLASSTVGLAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVLAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHNVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDNCSMEDAVQILQQCEDLVKLKIRKDEDNSDEQESSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQSASSPKKFPVSSHLSDLGDVEEDPSPAQKPGKLTDMYPSTVPSVDSAVDSWDGSGIDASYGNQGTGFQASGYNFNTYDWRSPKQRGSLSPVTKPRSQTYPDVGLSNEDWDRSTVSGFAGAPDSTEAEQEENFWSQALEDLETCGQSGILRELEATIMSGSTMSLNHEAPTPRSQLGRQASFQERSSSRPHYSQTTRSNTLPSDVGRKSVTLRKMKQEIKEIMSPTPVELHKVTLYKGSEMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNPLASQKSTEQTLPGGEWSEQNSAFFQQPSHGGNLEIREPTNTL", "length": 1038, "header": "tr|F1SH70-1|A0A287BRM8_PIG Computationally mapped isoform of Glutamate receptor interacting protein 1 OS=Sus scrofa OX=9823 GN=GRIP1 PE=1 SV=4 CANONICAL=A0A287BRM8-1" }, "locus": { "chromosome": "5", "start_pos": 30881194, "end_pos": 30698589, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000516.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000516.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000508.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000508.4" } ] } }, { "isoform_ac": "K7GMX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRM8/entry#K7GMX8-1", "sequence": { "sequence": "MIAVSFKCRCQILRRLTKDESPYTKSASQTKPPDGALAVRRQSIPEEFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSVQGSGVIFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMDSVATASGPLLVEVAKTPGASLGVALTTSMCCNKQVIVIDKIKSASIADRCGALHVGDHILSIDGTSMEYCTLAEATQFLANTTDQVKLEILPHHQTRLALKGPDHVRIQRSDRQLTWDSWASNHCSLHTYHHYNTYHPDHCRAPALTFPKAPPPNSPPALVSSSFSPTSMSAYSLSSLNMGTLPRSLYSTSPRGTMMRRRLKKKDFKSSLSLASSTVGLAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVLAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAAPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDNCSMEDAVQILQQCEDLVKLKIRKDEDNSDEQESSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQSASSPKKFPVSSHLSDLGDVEEDPSPAQKPGKLTDMYPSTVPSVDSAVDSWDGSGIDASYGNQGTGFQASGYNFNTYDWRSPKQRGSLSPVTKPRSQTYPDVGLSNEDWDRSTVSGFAGAPDSTEAEQEENFWSQALEDLETCGQSGILRELEEKADRRVSLRNMTLLATIMSGSTMSLNHEAPTPRSQLGRQASFQERSSSRPHYSQTTRSNTLPSDVGRKSVTLRKMKQEIKEIMSPTPVELHKVTLYKGSEMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNPLASQKSTEQTLPGGEWSEQNSAFFQQPSHGGNLEIREPTNTL", "length": 1101, "header": "tr|K7GMX8-1|A0A287BRM8_PIG Computationally mapped isoform of Glutamate receptor interacting protein 1 OS=Sus scrofa OX=9823 GN=GRIP1 PE=1 SV=3 CANONICAL=A0A287BRM8-1" }, "locus": { "chromosome": "5", "start_pos": 31020436, "end_pos": 30698589, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000033391.4", "url": "https://www.ensembl.org/id/ENSSSCT00000033391.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029227.3", "url": "https://www.ensembl.org/id/ENSSSCP00000029227.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXX1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXX1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-416993", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416993", "resource": "Reactome", "description": "Trafficking of GluR2-containing AMPA receptors" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "neurotransmitter receptor transport, endosome to postsynaptic membrane", "id": "GO:0098887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098887", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRM8", "url": "https://www.uniprot.org/uniprotkb/A0A287BRM8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRM8", "url": "https://www.uniprot.org/uniprotkb/A0A287BRM8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 267, "end_pos": 269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 525, "end_pos": 527, "annotation": "n_glycosylation_sequon" }, { "start_pos": 616, "end_pos": 618, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BRM8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1005, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BRM8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BRM8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BRM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BRM8" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 80, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": 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phosphatidylinositol and phosphatidylcholine between membranes (in vitro). Binds calcium ions.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4K9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4K9#function" }, { "database": "UniProtKB", "id": "ARBA00059635", "url": "https://www.uniprot.org/uniprotkb/ARBA00059635#function" }, { "database": "UniProtKB", "id": "A0A287BH48", "url": "https://www.uniprot.org/uniprotkb/A0A287BH48#function" }, { "database": "UniProtKB", "id": "F1RGM2", "url": "https://www.uniprot.org/uniprotkb/F1RGM2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A481D2R0", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PITPNM3", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0", "locus": { "chromosome": "12", "start_pos": 50898331, "end_pos": 50742773, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017890", "url": "https://www.ensembl.org/id/ENSSSCG00000017890" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017890", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017890", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001666", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001666", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004177", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004177", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031447", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031447", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521472", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521472", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LERPWNG", "url": "https://omabrowser.org/oma/group/LERPWNG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PSIVWMR", "url": "https://omabrowser.org/oma/group/PSIVWMR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A481D2R0", "url": "https://www.orthodb.org/?gene=A0A481D2R0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10658", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10658", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10658:SF27", "url": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF24695", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A9K6", "url": "https://www.uniprot.org/uniprotkb/A0A287A9K6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A9K6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9K6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMV4", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMV4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BH48", "url": "https://www.uniprot.org/uniprotkb/A0A287BH48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BH48-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BH48-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481D2R0", "url": 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"MMGPGRPASTCDHLASSVQLDERNDPRKLQTQNQLQFNRNVPTHSSNLAIRYSCPHGIRIEKLKHSCNESDQCRDGPDLSSSVSFSVISEERLSYAVHLAKRDVKRRQLEEHIKERHLGSQPRVAQQCGRAKHDVSAQRLERKESKRQGRRQPSKVEISSSGATVYLCTSPPGQSELPKPNSPPTRDPGLQPPTAGDHKSLCEHKTLLEVQRLQKELSSCIQKIEEVTKKDRMEEALDPDEERRVRVRRQEQAVRSARVLYVLQQQVKEIQEELDKLSPHKIKHTKKSWAVSRLAAAHRGAIRALQMFVTQFTDRGEHPLPARCRELGSLIRQLSLCSAKLEADSSVPDVVIDILQQIEALESLLEKKLSPKKAKQCFSEIRSRFPVGTQRALDRWRSTSPKSERRPLVAKEVFLQETRRPPVAKKLLTDKHHPDDVELPVTPRLEKELDVLDAEILPEEAPSILDPNTSFKEALALPKARAVKKKLVTENVPPFRKKDTLAAARLQQGLHKAEKSRPTQSYSKSRLQRTTVSSRLKMNQQPVKNHRAPWIPPNPTSPPASPKCAAWLKVKSSPTDATKEQSLQPEDAPEESQLRGAIAHEAARLAWLDVETSKRLKALEELKDEEMDRMQKQRLDWLDAETSKRTKELNELKSEEVDRLHKLSVSATQLADKVEKAVLERLKPLLVKAQRVNSSLEADSHLKNQPSVNAATARPAEEAPAIDCGPSNIRQLDDFLDDTAHELWAVTHSKILESDTLATLGDSRDSPYLETMMLRMEEMEKYQETVRQRYSKIVYTDPHLWMQEEKKDQNIPAVSERPLSPHPIRITKTAARKDPDVNIVLERPCNSTSLDESVGTEERSEKREAPLLSLSEDSLQREGRVALSVPPGMWRSIGDYCSRFEHYLRVVAHEAVGAFNPWLIAESFSDELVDEALGAVAAELQDVCEDYAEAVFTSEFLEAAT", "length": 961, "header": "tr|A0A481D2R0-1|A0A481D2R0_PIG Isoform 1 of PITPNM family member 3 OS=Sus scrofa OX=9823 GN=PITPNM3 PE=4 SV=1 CANONICAL=A0A481D2R0-1" }, "isoforms": [ { "isoform_ac": "A0A287A9K6-1", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0/entry#A0A287A9K6-1", "sequence": { "sequence": "MMGPGRPASTCDHLASSVQLDERNDPRKLQTQNQLQFNRNVPTHSSNLAIRYSCPHGIRIEKLKHSCNESDQCRDGPDLSSSVSFSVISEERLSYAVHLAKRDVKRRQLEEHIKERHLGSQPRVAQQCGRAKHDVSAQRLERKESKRQGRRQPSKVEISSSGATVYLCTSPPGQSELPKPNSPPTRDPGLQPPTAGDHKSLCEHKTLLEVQRLQKELSSCIQKIEEVTKKDRMEEALDPDEERRVRVRRQEQAVRSARVLYVLQQQVKEIQEELDKLSPHKIKHTKKSWAVSRLAAAHRGAIRALQMFVTQFTDRGEHPLPARCRELGSLIRQLSLCSAKLEADSSVPDVVIDILQQIEALESLLEKKLSPKKAKQCFSEIRSRFPVGTQRALDRWRSTSPKSERRPLVAKEVFLQETRRPPVAKKLLTDKHHPDDVELPVTPRLEKELDVLDAEILPEEAPSILDPNTSFKEALALPKARAVKKKLVTENVPPFRKKDTLAAARLQQGLHKAEKSRPTQSYSKSRLQRTTVSSRLKMNQQPVKNHRAPWIPPNPTSPPASPKCAAWLKVKSSPTDATKEQSLQPEDAPEESQLRGAIAHEAARLAWLDVETSKRLKALEELKDEEMDRMQKQRLDWLDAETSKRTKELNELKSEEVDRLHKLSVSATQLADKVEKAVLERLKPLLVKAQRVNSSLEADSHLKNQPSVNAATARPAEEAPAIDCGPSNIRQLDDFLDDTAHELWAVTHSKILESDTLATLGDSRDSPYLETMMLRMEEMEKYQETVRQRYSKIVYTDPHLWMQEEKKDQNIPAVSERPLSPHPIRITKTAARKDPDVNIVLERPCNSTFSDELVDEALGAVAAELQDVCEDYAEAVFTSEFLEAAT", "length": 886, "header": "tr|A0A287A9K6-1|A0A481D2R0_PIG Computationally mapped isoform of PITPNM family member 3 OS=Sus scrofa OX=9823 GN=PITPNM3 PE=4 SV=3 CANONICAL=A0A481D2R0-1" }, "locus": { "chromosome": "12", "start_pos": 50791713, "end_pos": 50742837, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040070.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040070.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040486.3", "url": "https://www.ensembl.org/id/ENSSSCP00000040486.3" } ] } }, { "isoform_ac": "A0A287AMV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0/entry#A0A287AMV4-1", "sequence": { "sequence": "MSQWNSNDLVEQIETMGKLEEPQGEGSTPCTSSILQEKQRELYRVSLRRQRFPAQGSIEIHEDSEEGCPQRSCKTHVLLLVLHGGNILDTGSGDPSCKVADIHTFSSVLEKVMRAHFPAALGHILIKFVSCPAICSEAFSLVSNLNPYSHDEGCLSNSQDHVPLAALPLLAISSPQYQDAVATVIERANQVYAEFLKSPDGIGFSGQVCLIGDCVGGLLAFDAICYSSGPLGDSPGSSSRKGSISSTQDTPVVVEEECGLAGSKRLSKSSIDVSSVLEDEEPQRPLPRKQSDSSTYDCEAITQHHAFLSSIHSSVLKDEAEPPAAGGPQLPEVSLGRLDFDVSDFFLFGSPLGLVLAMRRTVLPGLDGFQIRPACSQVYSFFHCADPSASRLEPLLEPKFHLVPPVSVPRYQRFPLGDGQSLLLADALHTHSSLFLEGSSRGSPPLLDAPTSPPPAPRSQRLGRRMSQGSSHSESSESSDSLAPVGASRITAKWWGAKRIDYALYCPDVLTAFPTVALPHLFHASYWESTDVVAFILRQVMRYESVNVKESAGVDPAALSPANPREKWLRKRTQVKLRNVTANHRANDVIAAEDGPQVLVGRFMYGPLDMVALTGEKVDILVMAEPSSGRWVHLDTEITNSSGRITYSVPRPRRLGVGVYPVKMVVRHWQDLGYMILYITGRPDMQKQRVVSWLSQHNFPQGMIFFSDGLVHDPLRQKAIFLRNLVQECFIKISAAYGSTKDISVYSVLGLPPSQIFIVGRPTKKYQTQCQFLSEGYAAHLAALEAGHRSRPKKNSSRMILRKGSFGLHAQPEFLRKRNHLRRTMSVQQPDPPANPKPERAQSQPESDKDHERPLPALSWARGPPKFESVP", "length": 871, "header": "tr|A0A287AMV4-1|A0A481D2R0_PIG Computationally mapped isoform of PITPNM family member 3 OS=Sus scrofa OX=9823 GN=PITPNM3 PE=4 SV=2 CANONICAL=A0A481D2R0-1" }, "locus": { "chromosome": "12", "start_pos": 50894331, "end_pos": 50839591, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057129.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057129.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045236.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045236.2" } ] } }, { "isoform_ac": "A0A287BH48-1", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0/entry#A0A287BH48-1", "sequence": { "sequence": "MIPWSGGRWRGPPFIFEPWGHLPLGFVGASLRPFFLPPFLLSALCRSPGARVSSVLRISLPFFPSVLRPPRGGRSLSPCFRASRPRLPVRVPILSWTAASPRLRARPGLRAERVGAAAAARGGGAGPRGRRWAPTSVSPSPAARGGRRGRRSAPLREREGAARRRRLRWRRPRRAGRGRGARRSESARGRRRLGGPGPGREPRGARAAPPEPAARAMAKADRAGGPPPGGGAPWHLQNVLSDSVESSDDEFFDAREEVAEGKNAILIGMSQWNSNDLVEQIETMGKLEEPQGEGSTPCTSSILQEKQRELYRVSLRRQRFPAQGSIEIHEDSEEGCPQRSCKTHVLLLVLHGGNILDTGSGDPSCKVADIHTFSSVLEKVMRAHFPAALGHILIKFVSCPAICSEAFSLVSNLNPYSHDEGCLSNSQDHVPLAALPLLAISSPQYQDAVATVIERANQVYAEFLKSPDGIGFSGQVCLIGDCVGGLLAFDAICYSSGPLGDSPGSSSRKGSISSTQDTPVVVEEECGLAGSKRLSKSSIDVSSVLEDEEPQRPLPRKQSDSSTYDCEAITQHHAFLSSIHSSVLKDEAEPPAAGGPQLPEVSLGRLDFDVSDFFLFGSPLGLVLAMRRTVLPGLDGFQIRPACSQVYSFFHCADPSASRLEPLLEPKFHLVPPVSVPRYQRFPLGDGQSLLLADALHTHSSLFLEGSSRGSPPLLDAPTSPPPAPRSQRLGRRMSQGSSHSESSESSDSLAPVGASRITAKWWGAKRIDYALYCPDVLTAFPTVALPHLFHASYWESTDVVAFILRQVMRYESVNVKESAGVDPAALSPANPREKWLRKRTQVKLRNVTANHRANDVIAAEDGPQVLVGRFMYGPLDMVALTGEKVDILVMAEPSSGRWVHLDTEITNSSGRITYSVPRPRRLGVGVYPVKMVVRGDQTCAMSYLTVLPRGMECVVFSIDGSFAASVSIMGSDPKVRPGAVDVVRHWQDLGYMILYITGRPDMQKQRVVSWLSQHNFPQGMIFFSDGLVHDPLRQKAIFLRNLVQECFIKISAAYGSTKDISVYSVLGLPPSQIFIVGRPTKKYQTQCQFLSEGYAAHLAALEAGHRSRPKKNSSRMILRKGSFGLHAQPEFLRKRNHLRRTMSVQQPDPPANPKPERAQSQPESDKDHERPLPALSWARGPPKFESVP", "length": 1189, "header": "tr|A0A287BH48-1|A0A481D2R0_PIG Computationally mapped isoform of PITPNM family member 3 OS=Sus scrofa OX=9823 GN=PITPNM3 PE=4 SV=1 CANONICAL=A0A481D2R0-1" }, "locus": { "chromosome": "12", "start_pos": 50894331, "end_pos": 50808788, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051348.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051348.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055385.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055385.1" } ] } }, { "isoform_ac": "A0A481D2R0-1", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0/entry#A0A481D2R0-1", "sequence": { "sequence": "MMGPGRPASTCDHLASSVQLDERNDPRKLQTQNQLQFNRNVPTHSSNLAIRYSCPHGIRIEKLKHSCNESDQCRDGPDLSSSVSFSVISEERLSYAVHLAKRDVKRRQLEEHIKERHLGSQPRVAQQCGRAKHDVSAQRLERKESKRQGRRQPSKVEISSSGATVYLCTSPPGQSELPKPNSPPTRDPGLQPPTAGDHKSLCEHKTLLEVQRLQKELSSCIQKIEEVTKKDRMEEALDPDEERRVRVRRQEQAVRSARVLYVLQQQVKEIQEELDKLSPHKIKHTKKSWAVSRLAAAHRGAIRALQMFVTQFTDRGEHPLPARCRELGSLIRQLSLCSAKLEADSSVPDVVIDILQQIEALESLLEKKLSPKKAKQCFSEIRSRFPVGTQRALDRWRSTSPKSERRPLVAKEVFLQETRRPPVAKKLLTDKHHPDDVELPVTPRLEKELDVLDAEILPEEAPSILDPNTSFKEALALPKARAVKKKLVTENVPPFRKKDTLAAARLQQGLHKAEKSRPTQSYSKSRLQRTTVSSRLKMNQQPVKNHRAPWIPPNPTSPPASPKCAAWLKVKSSPTDATKEQSLQPEDAPEESQLRGAIAHEAARLAWLDVETSKRLKALEELKDEEMDRMQKQRLDWLDAETSKRTKELNELKSEEVDRLHKLSVSATQLADKVEKAVLERLKPLLVKAQRVNSSLEADSHLKNQPSVNAATARPAEEAPAIDCGPSNIRQLDDFLDDTAHELWAVTHSKILESDTLATLGDSRDSPYLETMMLRMEEMEKYQETVRQRYSKIVYTDPHLWMQEEKKDQNIPAVSERPLSPHPIRITKTAARKDPDVNIVLERPCNSTSLDESVGTEERSEKREAPLLSLSEDSLQREGRVALSVPPGMWRSIGDYCSRFEHYLRVVAHEAVGAFNPWLIAESFSDELVDEALGAVAAELQDVCEDYAEAVFTSEFLEAAT", "length": 961, "header": "tr|A0A481D2R0-1|A0A481D2R0_PIG Isoform 1 of PITPNM family member 3 OS=Sus scrofa OX=9823 GN=PITPNM3 PE=4 SV=1 CANONICAL=A0A481D2R0-1" }, "locus": { "chromosome": "12", "start_pos": 50791713, "end_pos": 50742837, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038443.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038443.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035020.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035020.1" } ] } }, { "isoform_ac": "A0A5G2R4K9-1", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0/entry#A0A5G2R4K9-1", "sequence": { "sequence": "MEEALDPDEERRVRVRRQEQAVRSARVLYVLQQQVKEIQEELDKLSPHKIKHTKKSWAVSRLAAAHRGAIRALQMFVTQFTDRGEHPLPARCRELGSLIRQLSLCSAKLEADSSVPDVVIDILQQIEALESLLEKKLSPKKAKQCFSEIRSRFPVGTQRALDRWRSTSPKSERRPLVAKEVFLQETRRPPVAKKLLTDKHHPDDVELPVTPRLEKELDVLDAEILPEEAPSILDPNTSFKEALALPKARAVKKKLVTENVPPFRKKDTLAAARLQQGLHKAEKSRPTQSYSKSRLQRTTVSSRLKMNQQPVKNHRAPWIPPNPTSPPASPKCAAWLKVKSSPTDATKEQSLQPEDAPEESQLRGAIAHEAARLAWLDVETSKRLKALEELKDEEMDRMQKQRLDWLDAETSKRTKELNELKSEEVDRLHKLSVSATQLADKVEKAVLERLKPLLVKAQRVNSSLEADSHLKNQPSVNAATARPAEEAPAIDCGPSNIRQLDDFLDDTAHELWAVTHSKILESDTLATLGDSRDSPYLETMMLRMEEMEKYQETVRQRYSKIVYTDPHLWMQEEKKDQNIPAVSERPLSPHPIRITKTAARKDPDVNIVLERPCNSTSLDESVGTEERSEKREAPLLSLSEDSLQREGRVALSVPPGMWRSIGDYCSRFEHYLRVVAHEAVGAFNPWLIAESFSDELVDEALGAVAAELQDVQNLNRLWAEERAWTAGPRERILSGTLTRSLSQSWEAREALADSGVFPLAGGPPPGGGAPWHLQNVLSDSVESSDDEFFDAREEVAEGKNAILIGMSQWNSNDLVEQIETMGKLEEPQGEGSTPCTSSILQEKQRELYRVSLRRQRFPAQGSIEIHEDSEEGCPQRSCKTHVLLLVLHGGNILDTGSGDPSCKVADIHTFSSVLEKVMRAHFPAALGHILIKFVSCPAICSEAFSLVSNLNPYSHDEGCLSNSQDHVPLAALPLLAISSPQYQDAVATVIERANQVYAEFLKSPDGIGFSGQVCLIGDCVGGLLAFDAICYSSGPLGDSPGSSSRKGSISSTQDTPVVVEEECGLAGSKRLSKSSIDVSSVLEDEEPQRPLPRKQSDSSTYDCEAITQHHAFLSSIHSSVLKDEAEPPAAGGPQLPEVSLGRLDFDVSDFFLFGSPLGLVLAMRRTVLPGLDGFQIRPACSQVYSFFHCADPSASRLEPLLEPKFHLVPPVSVPRYQRFPLGDGQSLLLADALHTHSSLFLEGSSRGSPPLLDAPTSPPPAPRSQRLGRRMSQGSSHSESSESSDSLAPVGASRITAKWWGAKRIDYALYCPDVLTAFPTVALPHLFHASYWESTDVVAFILRQVMRYESVNVKESAGVDPAALSPANPREKWLRKRTQVKLRNVTANHRANDVIAAEDGPQVLVGRFMYGPLDMVALTGEKVDILVMAEPSSGRWVHLDTEITNSSGRITYSVPRPRRLGVGVYPVKMVVRGDQTCAMSYLTVLPRGMECVVFSIDGSFAASVSIMGSDPKVRPGAVDVVRHWQDLGYMILYITGRPDMQKQRVVSWLSQHNFPQGMIFFSDGLVHDPLRQKAIFLRNLVQECFIKISAAYGSTKDISVYSVLGLPPSQIFIVGRPTKKYQTQCQFLSEGYAAHLAALEAGHRSRPKKNSSRMILRKGSFGLHAQPEFLRKRNHLRRTMSVQQPDPPANPKPERAQSQPESDKDHERPLPALSWARGPPKFESVP", "length": 1726, "header": "tr|A0A5G2R4K9-1|A0A481D2R0_PIG Computationally mapped isoform of PITPNM family member 3 OS=Sus scrofa OX=9823 GN=PITPNM3 PE=4 SV=2 CANONICAL=A0A481D2R0-1" }, "locus": { "chromosome": "12", "start_pos": 50894331, "end_pos": 50750212, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071511.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071511.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072021.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072021.2" } ] } }, { "isoform_ac": "F1RGM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0/entry#F1RGM2-1", "sequence": { "sequence": "MIPWSGGRWRGPPFIFEPWGHLPLGFVGASLRPFFLPPFLLSALCRSPGARVSSVLRISLPFFPSVLRPPRGGRSLSPCFRASRPRLPVRVPILSWTAASPRLRARPGLRAERVGAAAAARGGGAGPRGRRWAPTSVSPSPAARGGRRGRRSAPLREREGAARRRRLRWRRPRRAGRGRGARRSESARGRRRLGGPGPGREPRGARAAPPEPAARAMAKADRAGGPPPGGGAPWHLQNVLSDSVESSDDEFFDAREEVAEGKNAILIGMSQWNSNDLVEQIETMGKLEEPQGEGSTPCTSSILQEKQRELYRVSLRRQRFPAQGSIEIHEDSEEGCPQRSCKTHVLLLVLHGGNILDTGSGDPSCKVADIHTFSSVLEKVMRAHFPAALGHILIKFVSCPAICSEAFSLVSNLNPYSHDEGCLSNSQDHVPLAALPLLAISSPQYQDAVATVIERANQVYAEFLKSPDGIGFSGQVCLIGDCVGGLLAFDAICYSSGPLGDSPGSSSRKGSISSTQDTPVVVEEECGLAGSKRLSKSSIDVSSVLEDEEPQRPLPRKQSDSSTYDCEAITQHHAFLSSIHSSVLKDEAEPPAAGGPQLPEVSLGRLDFDVSDFFLFGSPLGLVLAMRRTVLPGLDGFQIRPACSQVYSFFHCADPSASRLEPLLEPKFHLVPPVSVPRYQRFPLGDGQSLLLADALHTHSSLFLEGSSRGSPPLLDAPTSPPPAPRSQRLGRRMSQGSSHSESSESSDSLAPVGASRITAKWWGAKRIDYALYCPDVLTAFPTVALPHLFHASYWESTDVVAFILRQVMRYESVNVKESAGVDPAALSPANPREKWLRKRTQVKLRVDILVMAEPSSGRWVHLDTEITNSSGRITYSVPRPRRLGVGVYPVKMVVRGDQTCAMSYLTVLPRGMECVVFSIDGSFAASVSIMGSDPKVRPGAVDVVRHWQDLGYMILYITGRPDMQKQRVVSWLSQHNFPQGMIFFSDGLVHDPLRQKAIFLRNLVQECFIKISAAYGSTKDISVYSVLGLPPSQIFIVGRPTKKYQTQCQFLSEGYAAHLAALEAGHRSRPKKNSSRMILRKGSFGLHAQPEFLRKRNHLRRTMSVQQPDPPANPKPERAQSQPESDKDHERPLPALSWARGPPKFESVP", "length": 1150, "header": "tr|F1RGM2-1|A0A481D2R0_PIG Computationally mapped isoform of PITPNM family member 3 OS=Sus scrofa OX=9823 GN=PITPNM3 PE=4 SV=3 CANONICAL=A0A481D2R0-1" }, "locus": { "chromosome": "12", "start_pos": 50894331, "end_pos": 50808788, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019469.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019469.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018951.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018951.4" } ] } }, { "isoform_ac": "F1RGN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0/entry#F1RGN4-1", "sequence": { "sequence": "MMGPGRPASTCDHLASSVQLDERNDPRKLQTQLQFNRNVPTHSSNLAIRYSCPHGIRIEKLKHSCNESDQCRDGPDLSSSVSFSVISEERLSYAVHLAKRDVKRRQLEEHIKERHLGSQPRVAQQCGRAKHDVSAQRLERKESKRQGRRQPSKVEISSSGATVYLCTSPPGQSELPKPNSPPTRDPGLQPPTAGDHKSLCEHKTLLEVQRLQKELSSCIQKIEEVTKKDRMEEALDPDEERRVRVRRQEQAVRSARVLYVLQQQVKEIQEELDKLSPHKIKHTKKFTDRGEHPLPARCRELGSLIRQLSLCSAKLEADSSVPDVVIDILQQIEALESLLEKKLSPKKAKQCFSEIRSRFPVGTQRALDRWRSTSPKSERRPLVAKEVFLQETRRPPVAKKLLTDKHHPDDVELPVTPRLEKELDVLDAEILPEEAPSILDPNTSFKEALALPKARAVKKKLVTENVPPFRKKDTLAAARLQQGLHKAEKSRPTQSYSKSRLQRTTVSSRLKMNQQPVKNHRAPWIPPNPTSPPASPKCAAWLKVKSSPTDATKEQSLQPEDAPEESQLRGAIAHEAARLAWLDVETSKRLKALEELKDEEMDRMQKQRLDWLDAETSKRTKELNELKSEEVDRLHKLSVSATQLADKVEKAVLERLKPLLVKAQRVNSSLEADSHLKNQPSVNAATARPAEEAPAIDCGPSNIRQLDDFLDDTAHELWAVTHSKILESDTLATLGDSRDSPYLETMMLRMEEMEKYQETVRQRYSKIVYTDPHLWMQEEKKDQNIPAVSERPLSPHPIRITKTAARKDPDVNIVLERPCNSTSLDESVGTEERSEKREAPLLSLSEDSLQREGRVALSVPPGMWRSIGDYCSRFEHYLRVVAHEAVGAFNPWLIAESFSDELVDEALGAVAAELQDVCEDYAEAVFTSEFLEAAT", "length": 935, "header": "tr|F1RGN4-1|A0A481D2R0_PIG Computationally mapped isoform of PITPNM family member 3 OS=Sus scrofa OX=9823 GN=PITPNM3 PE=4 SV=4 CANONICAL=A0A481D2R0-1" }, "locus": { "chromosome": "12", "start_pos": 50791713, "end_pos": 50742837, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019467.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019467.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018949.5", "url": "https://www.ensembl.org/id/ENSSSCP00000018949.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4K9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4K9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521472", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521472", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZZR0-1", "protein_name": "RIKEN cDNA 4933427D14 gene like", "gene_name": "4933427D14Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGPSQPASTCVHLASSLQLDGMTDPRNLQPQNQLQFNRNVPTDPSNLAVRYSCPHGIKIEKLKHSYNELHHGKDLDFGAGNELSSSVSFSVISEERLSYAVHLAKRDVKRRQFEEHVKDHLRSQPQSSHKCMHTKVERKDSKSQDVCHCSHQPSKVSISSSGAKVYVYTSHRGRADLPMPNSPPTHDPGPQPQPRIEEHRNLWEQKGLLEVQRLQKELSSCIHKIEGLTKKDRLEEALDPDEEHRIRVRRQEQAVRSARMLYVLQQQVKEIQEELDKLSPRKIKHTKKSWAMSRLAAAHRAAIRALQVFITQFTDRGEHPVPARCRELGSLIRQLSLCSAKLDVDPSVPDVVIDILQQIEALESLLEKKLSPKKAKKCFTEIRSRFPIGSQKILERWPTVLPKSERRPLVTKETFPQETSRPSVAKRLLADVGQPDELQRLERELDALDTGIPPQEASHILDHGTDFKDETLTPVKPQAVRKKTVTGHMPLRKKDTSESARSQQGLHISERNRPNQPYSKSRLQQTTVSSRLKMNRQPVKDHRAPWIPPNPTSPPASPKCAAWLRGKYNPRDAAKVQSLQQETTHRESQLGGAAEQEAARLSWPDAESSKRLKELEELEAKELERKQKQRLDWLEAETSRRTKELDELKAEEMARLQKLSVSATQLADKVEEAVLERLKPLLIKAQRVNSSVEVNGHLKDLPSRSRAAAPTAAQPAVQASDVHFESRNICQLDDCLEDSAHELRAVTHDKILGSETSTRLGDSKDSPDLETMMLRMEEMEKYQETVRQRYNKIVYADPHLWTHEERNDQNTPAVSERPLASHPIKITKTATRKCPEVNILLERPCSANSLDESMGTEEESEKMEAPLPFFREDLHQKEGQTPLSVPPGMRHSIGDYCSRYEQFLRIISHEAIGSFNPWLIAESFSDELVDEALGAVAAELQDVCEDYAEAVFTSEFLEAAA", "length": 961 }, "evidence": [ { "id": "A0A481D2R0", "url": "https://omabrowser.org/oma/group/A0A481D2R0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RDK4-1", "protein_name": "Membrane-associated phosphatidylinositol transfer protein 3", "gene_name": "Pitpnm3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKAGSAGGPSPGGGAPWHLRNVLSDSVESSDDEFFDAREEVAEGKNAILIGMSQWSSNDLVEQIETMGKLDEHQGEGATACTSSILQEKQRELYRVSLRRQKFPAQGSIEIHEDVEEGCSQRSCKTHVLLLVLHGGNVLDTGSGDPSCKAADIHTFSSVLEKVTRAHFPAALGHILIKFVPCPAICSEAFSLVSNLNPYSHDEGCLSTSQDHVPLAALPLLAISSPQYQDAVATVIERANHIYGEFLKSSDGIGFNGQVCLIGDCVGGLLAFDAICYSAGPSGDSPGSSSRKGSISSTQDTPVVVEEDCNLASSKRLSKSNIDVSSGVEDEDPKRPLTRKQSDSSTYDCEAITQHHAFLSSIHSSVLKDEAEAPAAGTPQLSEVSLGRFDFDVSDFFLFGSPLGLVLAMRRTVLPGIDGFQMRPACSQVYSFFHCADPSASRLEPLLEPKFHLVPPVSVPRYQRFPLGDGQSLLLADALHTHSPLFLEGSSRGSPPLLDAPASPPQAPRSQRPERRLSEGSSHSDSSESSDSLAPMGASRITAKWWGTKRIDYALYCPDVLTAFPTVALPHLFHASYWESTDVVAFILRQVMRYESASVKESTGLDPTALSPANPREKWLRKRTQVKLRNVTANHRANDVIAAEDGPQVLVGRFMYGPLDMVALTGEKVDILVMTEPSSGRWVHLDTEITNNSGRITYNVPRPRRLGVGVYPVKMVVRGDQTCAMSYLTVLPRGMECVVFSIDGSFAASVSIMGSDPKVRPGAVDVVRHWQDLGYMILYITGRPDMQKQRVVSWLSQHNFPQGMIFFSDGLVHDPLRQKAIFLRNLMQECFIKITAAYGSTKDISVYSVLGLPASQIFIVGRPTKKYQTQCQFLSEGYAAHLAALEASHRSRPKKNNSRMILRKGSFGLHAQPEFLRKRNHLRRTMSVQQPDPPATNPKPERAQSQPESDKDHERPLPALSWARGAPKFESVP", "length": 974 }, "evidence": [ { "id": "A0A481D2R0", "url": "https://omabrowser.org/oma/group/A0A481D2R0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2KHM9-1", "protein_name": "Protein moonraker", "gene_name": "KIAA0753", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGPGQPASTCVHLAPRTQLDGRSDPKVLQTQNQLQFNRNVPTHSSNLAIRYSCPHAIRIEKLKHSYNESYHCKDADCRVGPDLGSSVSFSVISQERLSYAVHLARRDVKRRQFEKHIKEHHLRSQPQSSQKCGHTKYKIPDHRVERKESKSQAACQCSHQPSKVEISSSGAKVYLYSSHPGQSDLTVPNSPPTHDPGLQPHPRIGDHKNISEQKSLLEVQRLQKELSSCIHKIEEVTKKDRLEEALDPDEERRIRIRRQEQAARSARMLYVLQQQVKEIQEELDKLSPHKIKHTKKSWAMSKLAAAHRGAIRALQMFVTQFTDRGEHPLPARCKELGSLIRQLSLCSVKLDADPSVPDVVIDILQQIEALESLLEKKLSPKKVKKCFSEIRSRFPIGSQKALERWPSTSPKGERRPLTAKDTFPQETSRPSVAKQLLADKYQPDTELPETQRLQSELDVLDADIVLEEGPFILDQSASFKDEVLAVAKTKAGKKKPVTENVPFRKKDTLAPARQQGLRKAERGRQSQPHSKSRVQQTTVSSRLKMNRQPVKDRKAPWIPPNPTSPPASPKCAAWLKVKTSPRDATKEPLQQEDPQEESHLTGAVEHEAARLAWLDAETSKRLKELEELKAKEIDSMQKQRLDWLDAETSRRTKELNELKAEEMYRLQQLSVSATHLADKVEEAVLDRLKPLLVKAQRVNSTTEANIHLKDGSSVNTAKAQPAQEVAAVDFESNNIRQLDDFLEDCASELWAVTHAKILGSETLATVEDSKDSPDLEIMMRRMEEMEKYQESVRQRYNKIAYADPRLWMQEENNDQKISAISEKPLSPHPIRITKTVDRKDPAVNIMLERPCNGNSLDESVGTEEGSEKREAPLLSLAEDSQQKEGRAPLFVPPGMQHSIGDYCSRFEQYLRIISHEAVGSFNPWLIAESFSEELVDEALGAVAAELQDMCEDYAEAVFTSEFLEAAT", "length": 967 }, "evidence": [ { "id": "A0A481D2R0", "url": "https://omabrowser.org/oma/group/A0A481D2R0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3UHE1-1", "protein_name": "Membrane-associated phosphatidylinositol transfer protein 3", "gene_name": "Pitpnm3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKAGSAGGPSPGGGAPWHLRNVLSDSVESSDDEFFDAREEVAEGKNAILIGMSQWSSNDLVEQIETIGKLDERQGDGATACTSSILQEKQRELYRVSLRRQRFPAQGSIEIHEDGEEGCSQRSCKTHVLLLVLHGGNVLDTGSGDPSCKAADIHTFSSVLEKVMRAHFPAALGHILIKFVPCPAICSEAFSLVSNLNPYSHDEGCLGTSQDHVPLAALPLLAISSPQYQDAVATVIERANHIYGEFLKSSDGIGFNGQVCLIGDCVGGLLAFDAICYSAGPSGDSPGSSSRKGSISSTQDTPVVVEEDCSLASSKRLSKSNVDVSSGVEDEDPKRPLPRKQSDSSTYDCEAITQHHAFLSSIHSSVLKDEAEAPAAGTPQLSEVSLGRFDFDVSDFFLFGSPLGLVLAMRRTVLPGIDGFQMRPACSQVYSFFHCADPSASRLEPLLEPKFHLVPPVSVPRYQRFPLGDGQSLLLADALHTHSPLFLEGSSRGSPPLLDAPASPPQAPRFQRTERRLSKGSSHSDSSESSDSLAPMGASRITAKWWGTKRIDYALYCPDVLTAFPTVALPHLFHASYWESTDVVAFILRQVMRYESASVKESTGLDPTALSPANPREKWLRKRTQVKLRNVTANHRANDVIAAEDGPQVLVGRFMYGPLDMVALTGEKVDILVMTEPSSGRWVHLDTEITNNSGRITYNVPRPRRLGVGVYPVKMVVRGDQTCAMSYLTVLPRGMECVVFSIDGSFAASVSIMGSDPKVRPGAVDVVRHWQDLGYMILYITGRPDMQKQRVVSWLSQHNFPQGMIFFSDGLVHDPLRQKAIFLRNLMQECFIKITAAYGSTKDISVYSVLGLPASQIFIVGRSTKKYQTQCQFLSEGYAAHLAALEASHRSRPKKNNSRMILRKGSFGLHAQPEFLRKRNHLRRTMSVQQPDPPAANPKPERAQSQPESDKDHERPLPALSWARGPPKFESVP", "length": 974 }, "evidence": [ { "id": "A0A481D2R0", "url": "https://omabrowser.org/oma/group/A0A481D2R0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6A000-1", "protein_name": "Protein moonraker", "gene_name": "Kiaa0753", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGPSQPASTCVHLAPSLQLDAMSDPRNLQPQNQLQFNRNVPTNPRNLAVRYSCPHGIKIEKLKHSYNELNHGKDLDFKAGNELSSSVSFSVISEERLSYAVHLAKRDVKRRQFEEHVKDHLRSLPHSSHKGMHTKVERKDSKSQDVCHCSHQPSRVSLSSSGAKVYVYTSQPGRSDLTVPNSPPTHDPGLQLQPRIEENKNLWEQKGLLEVQRLQKELSGCIRKIEALTKKDRLEEALDPDEEHRIRVRRQEQAVRCARMLYVLQQQVKEIQEELDKLSPQKIKHTKKSWAVSRLAAAHRAAIRALQVFVTQFTDRGEHPVPARCRELGSLIRQLSLCSAKLDADPSVPDVVIDILQQIEALESLLEKKLSPKKAKKCFTEIRSRFPVGSQKILERWPTVLPKSERRHLVTKETFPQETSRPPVAKRLLAAMCQPDGELQRLESEPDVLDAHLLPEEAPRIEDNGTDFKDGTLTPAKPQAVRRKALTGSMPIRKKDTVESARPQQGLHIAERNRPNQPYSKSRLQQTTVSSRLKMNRQPMKDHRAPWIPPNPTSPPASPKCAAWMKVKYSPRDAAKEQSLQQEDIHKESQLRGDAEQEAARLSWPDAESSKRLKELEELEAKEMERKQKQRLNWLEAETSRRTKELDELKAEEMDRLQKLSVSATQLADKVEEAVLERLKPLLIKAQRVNSSVEANSHLKDRPSRHAAAAAQPAEQASDVPFESRNIPQLRDCLEDTAHELWARTQDKILGSETSARLGDSKDSPDLETMMLRMEEMEKYQETVRQRYNKIVYADPHLWMHEERNDQNTPAVSEGPLASHPIKITKTATQKCPAVNILLERPCNANSLDESVTTEEGSEKREAPLPLSREDLHQRKGQTPLSVPPRMRHSIGAYCSRFEQFLRIIAHEAIGSFNPWLIAESFSDELVDEALGAVAAELQDVCEDYAEAVFTSEFLEAAA", "length": 959 }, "evidence": [ { "id": "A0A481D2R0", "url": "https://omabrowser.org/oma/group/A0A481D2R0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BZ71-1", "protein_name": "Membrane-associated phosphatidylinositol transfer protein 3", "gene_name": "PITPNM3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKAGRAGGPPPGGGAPWHLRNVLSDSVESSDDEFFDAREEMAEGKNAILIGMSQWNSNDLVEQIETMGKLDEHQGEGTAPCTSSILQEKQRELYRVSLRRQRFPAQGSIEIHEDSEEGCPQRSCKTHVLLLVLHGGNILDTGAGDPSCKAADIHTFSSVLEKVTRAHFPAALGHILIKFVPCPAICSEAFSLVSHLNPYSHDEGCLSSSQDHVPLAALPLLAISSPQYQDAVATVIERANQVYREFLKSSDGIGFSGQVCLIGDCVGGLLAFDAICYSAGPSGDSPASSSRKGSISSTQDTPVAVEEDCSLASSKRLSKSNIDISSGLEDEEPKRPLPRKQSDSSTYDCEAITQHHAFLSSIHSSVLKDESETPAAGGPQLPEVSLGRFDFDVSDFFLFGSPLGLVLAMRRTVLPGLDGFQVRPACSQVYSFFHCADPSASRLEPLLEPKFHLVPPVSVPRYQRFPLGDGQSLLLADALHTHSPLFLEGSSRDSPPLLDAPASPPQASRFQRPGRRMSEGSSHSESSESSDSMAPVGASRITAKWWGSKRIDYALYCPDVLTAFPTVALPHLFHASYWESTDVVAFILRQVMRYESVNIKESARLDPAALSPANPREKWLRKRTQVKLRNVTANHRANDVIAAEDGPQVLVGRFMYGPLDMVALTGEKVDILVMAEPSSGRWVHLDTEITNSSGRITYNVPRPRRLGVGVYPVKMVVRGDQTCAMSYLTVLPRGMECVVFSIDGSFAASVSIMGSDPKVRPGAVDVVRHWQDLGYMILYITGRPDMQKQRVVSWLSQHNFPQGMIFFSDGLVHDPLRQKAIFLRNLMQECFIKISAAYGSTKDISVYSVLGLPASQIFIVGRPTKKYQTQCQFLSEGYAAHLAALEASHRSRPKKNNSRMILRKGSFGLHAQPEFLRKRNHLRRTMSVQQPDPPAANPKPERAQSQPESDKDHERPLPALSWARGPPKFESVP", "length": 974 }, "evidence": [ { "id": "A0A481D2R0", "url": "https://omabrowser.org/oma/group/A0A481D2R0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "X1WC30-1", "protein_name": "Protein moonraker isoform X1", "gene_name": "si:dkey-243i1.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MISDFHRASTMTTADLGSLNRQWIKKGSSVSQIAGLQTQLQFNSAVLPSVLNRATRVGPPSPIVIEKLLPHTERQDDMESCSSSLRLSVLSEERLQAAVRLAKRDLQRKRQESINRSSLEQEETQEIIIPERTNTDNVPRVVSPKMAGTRKQIKTGAHVLVYTPQKPNSPIKQTQTPIKNTIVNSSEPQLTQEIRKLQKELSTYVQRVEQLANKECVVEALEPNEKQRIEIRRQEQAARSARMIYVLQQQVKEIKQDLDKLRCQNIKPTKKSRPMERLAAAHRGAVRAMQVFINQLSDPAENRVPTHCKELGQLIRQLSLCSAKVEVGQGSVVPETALDILQKLEMLDSALSKQETTKKRDVYLQNVNPVEKTSIQVRARSMSPPRPARAPAERNSRRPRKPADAKKPASSRLAGKSHRTSQALLKERNDVLKAGLESLIHHQKLREAEAQKTNKTTSAISQDHVKQASHVRDAKFQQPTVSSRLRENQVPQKESTVPWIPTSPHSPSRLRAVPNRPEPRCLFSPHKNPEKQKPQTTSSTQLSASSPDRKQAQNEALRQAWLDRVTADRLRELNRLSKEEADRIKKLRTTVGSPTQWAERAERAAKERIQPLLDQAQRVAGAGSDRLRARLKVTDKAEGKTDLLTETLLEDLQEDTAQALWVTQREQVAETDAERKLQGPTLESMLLRMEEMERDQDEVRRRLAMISYSDPLIWERGTDATRNNSSSRPISPQPIRLTKPALNAPPTADILLQKPVEIGAASDMPILDDESLTPNDSSNPVPAGGGSTRGVYLTVPASMQRRIQKYRENHDAFLRLISHEALGSFNPWAIADSLADELMSEALAEVAAEFQDVCEEYAEAVFTSEFLQPVQSPSTSMS", "length": 878 }, "evidence": [ { "id": "A0A481D2R0", "url": "https://omabrowser.org/oma/group/A0A481D2R0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A481D2R0", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0" } ], "pmid": "" }, { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "A0A481D2R0", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0" } ], "pmid": "" }, { "name": "phospholipid transporter activity", "id": "GO:0005548", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005548", "evidence": [ { "database": "UniProtKB", "id": "A0A481D2R0", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A481D2R0", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0" } ], "pmid": "" }, { "name": "microtubule organizing center", "id": "GO:0005815", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005815", "evidence": [ { "database": "UniProtKB", "id": "A0A481D2R0", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0" } ], "pmid": "" }, { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "A0A481D2R0", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein localization to centrosome", "id": "GO:0071539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071539", "evidence": [ { "database": "UniProtKB", "id": "A0A481D2R0", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0" } ], "pmid": "" }, { "name": "centriole replication", "id": "GO:0007099", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007099", "evidence": [ { "database": "UniProtKB", "id": "A0A481D2R0", "url": "https://www.uniprot.org/uniprotkb/A0A481D2R0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 468, "end_pos": 470, "annotation": "n_glycosylation_sequon" }, { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" }, { "start_pos": 693, "end_pos": 695, "annotation": "n_glycosylation_sequon" }, { "start_pos": 846, "end_pos": 848, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 468, "end_pos": 470 }, { "start_pos": 68, "end_pos": 70 }, { "start_pos": 693, "end_pos": 695 }, { "start_pos": 846, "end_pos": 848 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480TQ97-1", "uniprot_ac": "A0A480TQ97", "uniprot_id": "A0A480TQ97_PIG", "mass": { "chemical_mass": 50781.0, "monoisotopic_mass": 50781.0 }, "refseq": { "ac": "NP_001231077", "name": "serine incorporator 2 precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231077" }, "gene_names": [ { "name": "SERINC2", "type": "recommended", "evidence": [ { "id": "A0A480TQ97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480TQ97" } ] }, { 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"MGACLGACSLLSCASCLCGSAPCILCSCCPCSHNSTLSRLIFTAFLFLGVLVSIIMLSPGVESQLYKLPWVCEEGTGSTVILQGHIDCGSLLGHRAVYRMCFAMAAFFFLFTLLMICVRSSRDPRAAIQNGFWFFKFLIFVGITVGAFYIPDGSFSNIWFYFGVAGSFVFFLIQLVLLIDFAHSWNQRWLGKAEECDSRAWYAGLFFFTLLFYALSITAVALLFVYYTQPDACYESKVFIGLNLTLCVCVSIVAVLPKIQDAQPNSGLLQASVITLYTMFVTWLALSNVPDQKCNPHLLTHFGNWTALAGHEGYETQWWDAPSIVGLVVFILCTLFISLRSSDHRQVNSLMQTEECPPVLEATQQQQVTVSEGRAFDNEQDGVTYSYSFFHFCLVLASLHVMMTLTNWYRPGETRKMISTWTAVWVKICASWAGLLLYLWTLVAPLLLPNRDFS", "length": 454, "header": "tr|A0A480TQ97-1|A0A480TQ97_PIG Isoform 1 of Serine incorporator 2 OS=Sus scrofa OX=9823 GN=SERINC2 PE=3 SV=1 CANONICAL=A0A480TQ97-1" }, "isoforms": [ { "isoform_ac": "A0A480TQ97-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TQ97/entry#A0A480TQ97-1", "sequence": { "sequence": "MGACLGACSLLSCASCLCGSAPCILCSCCPCSHNSTLSRLIFTAFLFLGVLVSIIMLSPGVESQLYKLPWVCEEGTGSTVILQGHIDCGSLLGHRAVYRMCFAMAAFFFLFTLLMICVRSSRDPRAAIQNGFWFFKFLIFVGITVGAFYIPDGSFSNIWFYFGVAGSFVFFLIQLVLLIDFAHSWNQRWLGKAEECDSRAWYAGLFFFTLLFYALSITAVALLFVYYTQPDACYESKVFIGLNLTLCVCVSIVAVLPKIQDAQPNSGLLQASVITLYTMFVTWLALSNVPDQKCNPHLLTHFGNWTALAGHEGYETQWWDAPSIVGLVVFILCTLFISLRSSDHRQVNSLMQTEECPPVLEATQQQQVTVSEGRAFDNEQDGVTYSYSFFHFCLVLASLHVMMTLTNWYRPGETRKMISTWTAVWVKICASWAGLLLYLWTLVAPLLLPNRDFS", "length": 454, "header": "tr|A0A480TQ97-1|A0A480TQ97_PIG Isoform 1 of Serine incorporator 2 OS=Sus scrofa OX=9823 GN=SERINC2 PE=3 SV=1 CANONICAL=A0A480TQ97-1" }, "locus": { "chromosome": "6", "start_pos": 88016710, "end_pos": 87995764, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091544.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091544.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060260.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060260.1" } ] } }, { "isoform_ac": "I3LQH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TQ97/entry#I3LQH2-1", "sequence": { "sequence": "MDGRMMRSMRLKEEEAPGQGYRASCLCGSAPCILCSCCPCSHNSTLSRLIFTAFLFLGVLVSIIMLSPGVESQLYKLPWVCEEGTGSTVILQGHIDCGSLLGHRAVYRMCFAMAAFFFLFTLLMICVRSSRDPRAAIQNGFWFFKFLIFVGITVGAFYIPDGSFSNIWFYFGVAGSFVFFLIQLVLLIDFAHSWNQRWLGKAEECDSRAWYAGLFFFTLLFYALSITAVALLFVYYTQPDACYESKVFIGLNLTLCVCVSIVAVLPKIQDAQPNSGLLQASVITLYTMFVTWLALSNVPDQKCNPHLLTHFGNWTALAGHEGYETQWWDAPSIVGLVVFILCTLFISLRSSDHRQVNSLMQTEECPPVLEATQQQQVTVSEGRAFDNEQDGVTYSYSFFHFCLVLASLHVMMTLTNWYRPGETRKMISTWTAVWVKICASWAGLLLYLWTLVAPLLLPNRDFS", "length": 463, "header": "tr|I3LQH2-1|A0A480TQ97_PIG Computationally mapped isoform of Serine incorporator 2 OS=Sus scrofa OX=9823 GN=SERINC2 PE=3 SV=3 CANONICAL=A0A480TQ97-1" }, "locus": { "chromosome": "6", "start_pos": 88016710, "end_pos": 87992987, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031059.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031059.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026352.3", "url": "https://www.ensembl.org/id/ENSSSCP00000026352.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LQH2", "url": "https://www.uniprot.org/uniprotkb/I3LQH2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100626004", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626004", "resource": "KEGG Pathway" }, { "id": "R-SSC-977347", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977347", "resource": "Reactome", "description": "Serine metabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "Q1LXL6-1", "protein_name": "Serine incorporator 2 precursor", "gene_name": "serinc2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGACMALCSLASCASCLCGSAPCLLSGCCPSTYNSTVTRLAFSFFLLLGTIVSIIMILPGMETQLKKIPGFCEGGSSIPGFEGKVNCDVIVGYKSVYRMCFAMACFFFLFSIIMIRVRSSKDPRAAIQNGFWFFKFLILVGITVGAFFIPDGMFNTVWYYFGVVGSFIFILIQLILLVDFAHSWNQKWVENAEDGNSKCWYAALLSFTLVHYICAFAAVVLFYIFYTQPDDCTENKVFISLNLIFCIIVSVVAILPKVQEAQPSSGLLQASLISLYTMYLTWSAMSNNPNRKCNPSLLSIVKGQSAAPTPTSTPGVFTQWWDAQSVVGLVIFLLCTLYASIRSSNNSQVNKLMQTEEVQGLASSDANDAISEDGVRRAVDNEEDGVTYGYSFFHFSLFLASLYIMMTLTNWYQPETDYAAMTTTMPSVWVKICSSWLGLGLYLWTLVAPLVLTDRDFN", "length": 458 }, "evidence": [ { "id": "A0A480TQ97", "url": "https://omabrowser.org/oma/group/A0A480TQ97/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q4FZV1-1", "protein_name": "Serine incorporator 2", "gene_name": "Serinc2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALVKFKSRFISKSLLWFSIQSELRVGLGCAPVVAGLFPISASLGKVWRQHLSQVSPTRSRALPESDERLRQVGRGRGGDGLGVGPVKAPRVPPDPGSEAGAPRPAPRTAMGACLGACSLLSCASCLCGSAPCILCSCCPSTRNSTVSRLLFTGFLFLGVLVSIIMLSPGVESQLYKLPWVCEDRAQQPVVLQGPLDCGSLLGFRAVYRMCFATAAFFFLFMMLMICVRSSRDPRAAIQNGFWFFKFLILVGITVGAFYIPDGSFPKIWFYFGVVGSFLFILIQLILFIDFAHSWNQRWLCKAEECDSPVWYAGLFFFTFLFYLLSIAAVALMFVYYTESGACHEGKVFIGLNLTFCVCVSIIAVLPKVQSAQPNSGLLQASVVTLYTMFVTWSALSNVPDQKCNPHLPTKNGTGQVNLEDYSTVWWDAPSIVGLVIFILCTFFISLRSSDHRQVNSLMQTEECPAEMVQQQQVAVGDGRTYDNEQDGVTYSYSFFHFCLVLASLHVMMTLTNWYSPGETRKMISTWTSVWVKICASWAGLFLYLWTLVAPLLLPNRDFS", "length": 560 }, "evidence": [ { "id": "A0A480TQ97", "url": "https://omabrowser.org/oma/group/A0A480TQ97/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q58CW5-1", "protein_name": "Serine incorporator 2", "gene_name": "SERINC2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGACLGACSLLSCASCLCGSAPCILCSCCPCSHNSTLSRLFFTVFLFLGVLVCVIMLSPGVESQLYKLPWVCNEGTGSHVVLQGHIDCGSLLGHRAVYRMCFAMAAFFFLFSLLMVCVRSSRDPRAAIQNGFWFFKFLIFVGITVGAFYIPDGSFSNIWFYFGVVGSFIFLLIQLLLLIDFAHSWNQRWLCKAEECDSRAWYAGLFFFTLLFYALSITAVALLFVYYTQPGACYEGKVFIGLNLTLCVCVSIVAILPKIQDAQPNSGLLQASVITLYTMFVTWLALSNVPDQKCNPHLLTHFGNGTVLAGPEGYETHWWDAPSIVGLVVFILCTVFISLRSSDHRQVNSLMQTEECPPVLDATQQQVVSEGRAFDNEQDGVTYSYSFFHLCLVLASVHIMMTLTNWYRPGETRKMISTWTAVWVKICASWTGLLLYLWTLVAPLLLPNRDFS", "length": 452 }, "evidence": [ { "id": "A0A480TQ97", "url": "https://omabrowser.org/oma/group/A0A480TQ97/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8K0E7-1", "protein_name": "Serine incorporator 2", "gene_name": "Serinc2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGACLGACSLLSCASCLCGSAPCILCGCCPSTRNSTVSRLLFTSFLFLGVLVSIIMLSPGVESQLYKLPWVCEDRTQQPLVLQGPLDCGSLLGFRAVYRMCFATAAFFFFFMLLMICVRSSRDPRAAIQNGFWFFKFLILVGITVGAFYIPDGSFPKIWFYFGVVGSFLFILIQLILFVDFAHSWNQRWLCKAEECDSPAWYAGLFFFTFLFYLLSIAAVALMFVYYTESGACHEGKVFISLNLTFCVCVSIIAVLPKVQDAQPNSGLLQASVITLYTMFVTWSALSNVPDQKCNPHLPTKNGTGQVDLEDYSTVWWDAPSIVGLVIFILCTFFISLRSSDHRQVNSLMQTEECPAEMVQQQQVAVSDGRAYDNEQDGVTYSYSFFHFCLVLASLHVMMTLTNWYSPGETRKMISTWTSVWVKICASWAGLFLYLWTLVAPLLLPNRDFS", "length": 450 }, "evidence": [ { "id": "A0A480TQ97", "url": "https://omabrowser.org/oma/group/A0A480TQ97/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96SA4-1", "protein_name": "Serine incorporator 2", "gene_name": "SERINC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGACLGACSLLSCASCLCGSAPCILCSCCPASRNSTVSRLIFTFFLFLGVLVSIIMLSPGVESQLYKLPWVCEEGAGIPTVLQGHIDCGSLLGYRAVYRMCFATAAFFFFFTLLMLCVSSSRDPRAAIQNGFWFFKFLILVGLTVGAFYIPDGSFTNIWFYFGVVGSFLFILIQLVLLIDFAHSWNQRWLGKAEECDSRAWYAGLFFFTLLFYLLSIAAVALMFMYYTEPSGCHEGKVFISLNLTFCVCVSIAAVLPKVQDAQPNSGLLQASVITLYTMFVTWSALSSIPEQKCNPHLPTQLGNETVVAGPEGYETQWWDAPSIVGLIIFLLCTLFISLRSSDHRQVNSLMQTEECPPMLDATQQQQQVAACEGRAFDNEQDGVTYSYSFFHFCLVLASLHVMMTLTNWYKPGETRKMISTWTAVWVKICASWAGLLLYLWTLVAPLLLRNRDFS", "length": 455 }, "evidence": [ { "id": "A0A480TQ97", "url": "https://omabrowser.org/oma/group/A0A480TQ97/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A480TQ97", "url": "https://www.uniprot.org/uniprotkb/A0A480TQ97" } ], "pmid": "" }, { "name": "membrane", 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OS=Sus scrofa OX=9823 GN=ECT2 PE=4 SV=1 CANONICAL=A0A480TP11-1" }, "locus": { "chromosome": "13", "start_pos": 111311197, "end_pos": 111252114, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042727.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042727.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044443.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044443.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., 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"length": 1343, "header": "tr|A0A480JYQ6-1|A0A480JYQ6_PIG Isoform 1 of Zinc finger protein 335 OS=Sus scrofa OX=9823 GN=ZNF335 PE=3 SV=1 CANONICAL=A0A480JYQ6-1" }, "locus": { "chromosome": "17", "start_pos": 48152380, "end_pos": 48132836, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008135.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008135.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007919.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007919.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 201, "start_aa": "Thr", "end_pos": 201, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr201", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 556, "start_aa": "Thr", "end_pos": 556, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr556", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZMS5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMS5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516768", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516768", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { 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"uniprot_canonical_ac": "A0A287BSS7-1", "uniprot_ac": "A0A287BSS7", "uniprot_id": "A0A287BSS7_PIG", "mass": { "chemical_mass": 145049.0, "monoisotopic_mass": 145049.0 }, "refseq": { "ac": "XP_020922864", "name": "C-Jun-amino-terminal kinase-interacting protein 4 isoform X11", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922864" }, "gene_names": [ { "name": "SPAG9", "type": "recommended", "evidence": [ { "id": "A0A287BSS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSS7" } ] }, { "name": "SPAG9", "type": "synonym", "evidence": [ { "id": "XP_020922864", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922864" } ] } ], "protein_names": [ { "name": "C-Jun-amino-terminal kinase-interacting protein 4", "type": "recommended", "evidence": [ { "id": "A0A287BSS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSS7/entry#names_and_taxonomy" } ] }, { "name": "C-Jun-amino-terminal kinase-interacting protein 4 isoform X11", "type": "synonym", "evidence": [ { "id": "XP_020922864", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922864" } ] }, { "name": "JNK-associated leucine-zipper protein", "type": "synonym", "evidence": [ { "id": "A0A287BSS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSS7/entry#names_and_taxonomy" } ] }, { "name": "Mitogen-activated protein kinase 8-interacting protein 4", "type": "synonym", "evidence": [ { "id": "A0A287BSS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSS7/entry#names_and_taxonomy" } ] }, { "name": "Sperm-associated antigen 9", "type": "synonym", "evidence": [ { "id": "A0A287BSS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSS7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module. Regulates lysosomal positioning by acting as an adapter protein which links PIP4P1-positive lysosomes to the dynein-dynactin complex. Assists PIKFYVE selective functionality in microtubule-based endosome-to-TGN trafficking.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRZ7#function" }, { "database": "UniProtKB", "id": "ARBA00056878", "url": "https://www.uniprot.org/uniprotkb/ARBA00056878#function" }, { "database": "UniProtKB", "id": "A0A286ZTC5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTC5#function" }, { "database": "UniProtKB", "id": "A0A287BLH2", "url": "https://www.uniprot.org/uniprotkb/A0A287BLH2#function" }, { "database": "UniProtKB", "id": "A0A287BSS7", "url": "https://www.uniprot.org/uniprotkb/A0A287BSS7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BSS7", "url": "https://www.uniprot.org/uniprotkb/A0A287BSS7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPAG9", "url": "https://www.uniprot.org/uniprotkb/A0A287BSS7", "locus": { "chromosome": "12", "start_pos": 27202088, "end_pos": 27370405, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033228", "url": "https://www.ensembl.org/id/ENSSSCG00000033228" } ] } } ], "crossref": [ { "id": "ENSSSCG00000033228", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033228", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518147", "url": "https://www.ncbi.nlm.nih.gov/gene/100518147", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032486", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032486", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034743", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034743", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034744", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034744", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039911", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039911", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13886", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13886", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13886:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13886:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09744", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09744", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16471", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16471", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19056", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19056", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-525793", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-525793", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020922864", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922864", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZRZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZTC5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZTC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTC5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AW88", "url": "https://www.uniprot.org/uniprotkb/A0A287AW88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AW88-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AW88-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIC4", "url": "https://www.uniprot.org/uniprotkb/A0A287BIC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIC4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLH2", "url": "https://www.uniprot.org/uniprotkb/A0A287BLH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLH2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSS7", "url": "https://www.uniprot.org/uniprotkb/A0A287BSS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSS7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELEDGVVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFAQDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLESQTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSDQLESTAHSRIRKERPISLGIFPLPAGEGLLTPDTQKGGETPGSEQWKFQELSQPRSHTSLKDELSDVSQGGSKATTPASTAASDVAAIPADTPLNEDNEGFVKVAETPDKSEISKHIEVQVAQETRNVSIGSAENEEKSEVQAIIESTPELDMDKDLSGYKGSSTPTKGIENKAFDRNTESLFEELSSAGSGLIGDVDEGADLLGMGREVENLILENTQLLETKNALNVVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNKELEEELRKARAEAEDARQKAKDDDDSDIPTAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRASRENPAMQEKKRSSIWQFMPARFSRLFSSSSNTTKKPEPPVNLKYNAPTSHVTPSVKKRSSTLSQLPGDKSKAFDFLSEETEASLASRREQKREQYRQVKAHVQKEDGRVQAFGWSLPQKYKQVTNGQGENKMKNLPVPVYLRPLDEKDASMKLWCAVGVNLSGGKTRDGGSVVGASVFYKDVAGLESEGSKQRSASQSSLDKLDQELKEQQKELKNQEELSSLVWICTSTHSATKVIIIDAVQPGNILDSFTVCNSHVLCIASVPGARETDYPAGEELSESGQVDKASLCGSMTSNSSTETDSLLGGITVVGCSTEGVTAVATSPSTNGTSPVTEKPPEKEAENSEVDENVPTAEEATEATEGNAGSAEDTVDISQAGVYTEHVFTDPLGVQIPEDLSPVYQSSNDSDAYKDQISVLPNEQDLVREEAQKMSSLLPTMWLGAQNGCLYVHSSVAQWRKCLHSIKLKDSILSIVHVKGIVLVALADGTLAIFHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKIYVVQPKAMKIEKSFDAHPRKESQVRQLAWVGDGVWVSIRLDSTLRLYHAHTYQHLQDVDIEPYVSKMLGTGKLGFSFVRITALMVSCNRLWVGTGNGVIISIPLTETNKTSGASGNRPGSVIRVYGDENSDKVTPGTFIPYCSMAHAQLCFHGHRDAVKFFVAVPGQVISPQSGSSGTDLTADKVGPSAQEPGSQTPLKSMLVISGGEGYIDFRMGDEGGESELLGEDLPLEPSVTKAERSHLIVWQVMYGSE", "length": 1311, "header": "tr|A0A287BSS7-1|A0A287BSS7_PIG Isoform 1 of C-Jun-amino-terminal kinase-interacting protein 4 OS=Sus scrofa OX=9823 GN=SPAG9 PE=1 SV=2 CANONICAL=A0A287BSS7-1" }, "isoforms": [ { "isoform_ac": "A0A286ZRZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSS7/entry#A0A286ZRZ7-1", "sequence": { "sequence": "MELEDGVVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFAQDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLESQTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSDQLESTAHSRIRKERPISLGIFPLPAGEGLLTPDTQKGGETPGSEQWKFQELSQPRSHTSLKDELSDVSQGGSKATTPASTAASDVAAIPADTPLNEDNEGFVKVAETPDKSEISKHIEVQVAQETRNVSIGSAENEEKSEVQAIIESTPELDMDKDLSGYKGSSTPTKGIENKAFDRNTESLFEELSSAGSGLIGDVDEGADLLDFYLLSLVGMGREVENLILENTQLLETKNALNVVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNKELEEELRKARAEAEDARQKAKDDDDSDIPTAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRASRENPAMQEKKRSSIWQFFSRLFSSSSNTTKKPEPPVNLKYNAPTSHVTPSVKKRSSTLSQLPGDKSKAFDFLSEETEASLASRREQKREQYRQVKAHVQKEDGRVQAFGWSLPQKYKQVTNGQGENKMKNLPVPVYLRPLDEKDASMKLWCAVGVNLSGGKTRDGGSVVGASVFYKDVAGLESEGSKQRSASQSSLDKLDQELKEQQKELKNQEELSSLVWICTSTHSATKVIIIDAVQPGNILDSFTVCNSHVLCIASVPGARETDYPAGEELSESGQVDKASLCGSMTSNSSTETDSLLGGITVVGCSTEGVTAVATSPSTNGTSPVTEKPPEKEAENSEVDENVPTAEEATEATEGNAGSAEDTVDISQAGVYTEHVFTDPLGVQIPEDLSPVYQSSNDSDAYKDQISVLPNEQDLVREEAQKMSSLLPTMWLGAQNGCLYVHSSVAQWRKCLHSIKLKDSILSIVHVKGIVLVALADGTLAIFHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKIYVVQPKAMKIEKSFDAHPRKESQVRQLAWVGDGVWVSIRLDSTLRLYHAHTYQHLQDVDIEPYVSKMLGTGKLGFSFVRITALMVSCNRLWVGTGNGVIISIPLTETVILHQGRLLGLRANKTSGASGNRPGSVIRVYGDENSDKVTPGTFIPYCSMAHAQLCFHGHRDAVKFFVAVPGQVISPQSGSSGTDLTADKVGPSAQEPGSQTPLKSMLVISGGEGYIDFRMGDEGGESELLGEDLPLEPSVTKAERSHLIVWQVMYGSE", "length": 1328, "header": "tr|A0A286ZRZ7-1|A0A287BSS7_PIG Computationally mapped isoform of C-Jun-amino-terminal kinase-interacting protein 4 OS=Sus scrofa OX=9823 GN=SPAG9 PE=1 SV=3 CANONICAL=A0A287BSS7-1" }, "locus": { "chromosome": "12", "start_pos": 27370067, "end_pos": 27227841, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050451.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050451.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034251.3", "url": "https://www.ensembl.org/id/ENSSSCP00000034251.3" } ] } }, { "isoform_ac": "A0A286ZTC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSS7/entry#A0A286ZTC5-1", "sequence": { "sequence": "RVLTPRRLRRRIVTHSEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFAQDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLESQTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSDQLESTAHSRIRKERPISLGIFPLPAGEGLLTPDTQKGGETPGSEQWKFQELSQPRSHTSLKVSSSPEPLKAIEQEDELSDVSQGGSKATTPASTAASDVAAIPADTPLNEDNEGFVKVAETPDKSEISKHIEVQVAQETRNVSIGSAENEEKSEVQAIIESTPELDMDKDLSGYKGSSTPTKGIENKAFDRNTESLFEELSSAGSGLIGDVDEGADLLGMGREVENLILENTQLLETKNALNVVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNKELEEELRKARAEAEDARQKAKDDDDSDIPTAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRASRENPAMQEKKRSSIWQFFSRLFSSSSNTTKKPEPPVNLKYNAPTSHVTPSVKKRSSTLSQLPGDKSKAFDFLSEETEASLASRREQKREQYRQVKAHVQKEDGRVQAFGWSLPQKYKQVTNGQGENKMKNLPVPVYLRPLDEKDASMKLWCAVGVNLSGGKTRDGGSVVGASVFYKDVAGLESEGSKQRSASQSSLDKLDQELKEQQKELKNQEELSSLVWICTSTHSATKVIIIDAVQPGNILDSFTVCNSHVLCIASVPGARETDYPAGEELSESGQVDKASLCGSMTSNSSTETDSLLGGITVVGCSTEGVTAVATSPSTNGTSPVTEKPPEKEAENSEVDENVPTAEEATEATEGNAGSAEDTVDISQAGVYTEHVFTDPLGVQIPEDLSPVYQSSNDSDAYKDQISVLPNEQDLVREEAQKMSSLLPTMWLGAQNGCLYVHSSVAQWRKCLHSIKLKDSILSIVHVKGIVLVALADGTLAIFHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKIYVVQPKAMKIEKSFDAHPRKESQVRQLAWVGDGVWVSIRLDSTLRLYHAHTYQHLQDVDIEPYVSKMLGTGKLGFSFVRITALMVSCNRLWVGTGNGVIISIPLTETNKTSGASGNRPGSVIRVYGDENSDKVTPGTFIPYCSMAHAQLCFHGHRDAVKFFVAVPGQVISPQSGSSGTDLTADKVGPSAQEPGSQTPLKSMLVISGGEGYIDFRMGDEGGESELLGEDLPLEPSVTKAERSHLIVWQVMYGSE", "length": 1327, "header": "tr|A0A286ZTC5-1|A0A287BSS7_PIG Computationally mapped isoform of C-Jun-amino-terminal kinase-interacting protein 4 OS=Sus scrofa OX=9823 GN=SPAG9 PE=1 SV=2 CANONICAL=A0A287BSS7-1" }, "locus": { "chromosome": "12", "start_pos": 27370405, "end_pos": 27227841, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057737.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057737.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034821.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034821.2" } ] } }, { "isoform_ac": "A0A287AW88-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSS7/entry#A0A287AW88-1", "sequence": { "sequence": "MSPGCMLLFVFGFVGGAVVINSAILVSLSVLLLVHFSISTGVPALTQNLPRILRKERPISLGIFPLPAGEGLLTPDTQKGGETPGSEQWKFQELSQPRSHTSLKDELSDVSQGGSKATTPASTAASDVAAIPADTPLNEDNEGFVKVAETPDKSEISKHIEVQVAQETRNVSIGSAENEEKSEVQAIIESTPELDMDKDLSGYKGSSTPTKGIENKAFDRNTESLFEELSSAGSGLIGDVDEGADLLGMGREVENLILENTQLLETKNALNVVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNKELEEELRKARAEAEDARQKAKDDDDSDIPTAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRASRENPAMQEKKRSSIWQFFSRLFSSSSNTTKKPEPPVNLKYNAPTSHVTPSVKKRSSTLSQLPGDKSKAFDFLSEETEASLASRREQKREQYRQVKAHVQKEDGRVQAFGWSLPQKYKQVTNGQGENKMKNLPVPVYLRPLDEKDASMKLWCAVGVNLSGGKTRDGGSVVGASVFYKDVAGLESEGSKQRSASQSSLDKLDQELKEQQKELKNQEELSSLVWICTSTHSATKVIIIDAVQPGNILDSFTVCNSHVLCIASVPGARETDYPAGEELSESGQVDKASLCGSMTSNSSTETDSLLGGITVVGCSTEGVTAVATSPSTNGTSPVTEKPPEKEAENSEVDENVPTAEEATEATEGNAGSAEDTVDISQAGVYTEHVFTDPLGVQIPEDLSPVYQSSNDSDAYKDQISVLPNEQDLVREEAQKMSSLLPTMWLGAQNGCLYVHSSVAQWRKCLHSIKLKDSILSIVHVKGIVLVALADGTLAIFHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKIYVVQPKAMKIEKSFDAHPRKESQVRQLAWVGDGVWVSIRLDSTLRLYHAHTYQHLQDVDIEPYVSKMLGTGKLGFSFVRITALMVSCNRLWVGTGNGVIISIPLTETVILHQGRLLGLRANKTSGASGNRPGSVIRVYGDENSDKVTPGTFIPYCSMAHAQLCFHGHRDAVKFFVAVPGQVISPQSGSSGTDLTADKVGPSAQEPGSQTPLKSMLVISGGEGYIDFRMGDEGGESELLGEDLPLEPSVTKAERSHLIVWQVMYGSE", "length": 1177, "header": "tr|A0A287AW88-1|A0A287BSS7_PIG Computationally mapped isoform of C-Jun-amino-terminal kinase-interacting protein 4 OS=Sus scrofa OX=9823 GN=SPAG9 PE=1 SV=3 CANONICAL=A0A287BSS7-1" }, "locus": { "chromosome": "12", "start_pos": 27304474, "end_pos": 27227841, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039390.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039390.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048198.3", "url": "https://www.ensembl.org/id/ENSSSCP00000048198.3" } ] } }, { "isoform_ac": "A0A287BIC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSS7/entry#A0A287BIC4-1", "sequence": { "sequence": "MELEDGVVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFAQDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLESQTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSDQLESTAHSRIRKERPISLGIFPLPAGEGLLTPDTQKGGETPGSEQWKFQELSQPRSHTSLKDELSDVSQGGSKATTPASTAASDVAAIPADTPLNEDNEGFVKVAETPDKSEISKHIEVQVAQETRNVSIGSAENEEKSEVQAIIESTPELDMDKDLSGYKGSSTPTKGIENKAFDRNTESLFEELSSAGSGLIGDVDEGADLLGMGREVENLILENTQLLETKNALNVVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNKELEEELRKARAEAEDARQKAKDDDDSDIPTAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRASRENPAMQEKKRSSIWQFFSRLFSSSSNTTKKPEPPVNLKYNAPTSHVTPSVKKRSSTLSQLPGDKSKAFDFLSEETEASLASRREQKREQYRQVKAHVQKEDGRVQAFGWSLPQKYKQVTNGQGENKMKNLPVPVYLRPLDEKDASMKLWCAVGVNLSGGKTRDGGSVVGASVFYKDVAGLESEGSKQRSASQSSLDKLDQELKEQQKELKNQEELSSLVWICTSTHSATKVIIIDAVQPGNILDSFTVCNSHVLCIASVPGARETDYPAGEELSESGQVDKASLCGSMTSNSSTETDSLLGGITVVGCSTEGVTAVATSPSTNGTSPVTEKPPEKEGNIQSPASLTAGFFNPPDSVPLCTGQHSHSARPSPVASSRMTTTTGLCVRPHPLPLKQGRLRPSGGGQPPLRQSLYSLGCWDVTLTQPWSPAARLQSQHVPSAWPSCSWTQSPSWGLKQLPGLRLHQGTQVSRESATLLDGHPLRISISGVPLMAQWLTNPTRNHEVAGSIPGLAQWVKDRALP", 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"id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRZ7" } ], "reference": [ { "type": 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"count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BSH1-1", "uniprot_ac": "A0A287BSH1", "uniprot_id": "A0A287BSH1_PIG", "mass": { "chemical_mass": 93967.0, "monoisotopic_mass": 93967.0 }, "refseq": { "ac": "XP_020933430", "name": "potassium voltage-gated channel subfamily KQT member 2 isoform X13", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933430" }, "gene_names": [ { "name": "KCNQ2", "type": "recommended", "evidence": [ { "id": "A0A287BSH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSH1" } ] }, { "name": "KCNQ2", "type": "synonym", "evidence": [ { "id": "XP_020933430", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933430" } ] } ], "protein_names": [ { "name": "Potassium voltage-gated channel subfamily Q member 2", "type": "synonym", "evidence": [ { "id": "A0A287BSH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSH1/entry#names_and_taxonomy" } ] }, { "name": "potassium voltage-gated channel subfamily KQT member 2 isoform X13", "type": "synonym", "evidence": [ { "id": "XP_020933430", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933430" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BSH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSH1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCNQ2", "url": "https://www.uniprot.org/uniprotkb/A0A287BSH1", "locus": { "chromosome": "17", "start_pos": 62459281, "end_pos": 62506424, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031746", "url": "https://www.ensembl.org/id/ENSSSCG00000031746" } ] } } ], "crossref": [ { "id": "A0A287BSH1", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BSH1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000031746", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031746", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110257402", "url": "https://www.ncbi.nlm.nih.gov/gene/110257402", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003947", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003947", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TSWQPQG", "url": "https://omabrowser.org/oma/group/TSWQPQG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47735", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47735", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47735:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47735:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11956", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11956", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16642", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16642", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020933430", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933430", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "29463", "url": "https://www.rhea-db.org/rhea/29463", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "34963", "url": "https://www.rhea-db.org/rhea/34963", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "78547", "url": "https://www.rhea-db.org/rhea/78547", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "78555", "url": "https://www.rhea-db.org/rhea/78555", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZS06", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZS06-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS06-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEY0", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEY0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSH1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAGGAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLVASIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQYYERTVTVPMYSSQTQTYGASRLIPPLNQLELLRNLKSKSGLAFRKEPQPEPCPSQKVSLKDRVFSSPRGVAAKGKGSPQAQTVRRSPSADQSLEDSPSKVPKSWSFGERGRARQAFRARGAASRQNSEEASLPGEDVADDNKSCNCEFVTEDLTPGLKVSIRAVCVMRFLVSKRKFKESLRPYDVMDVIEQYSAGHLDMLSRIKNLQSRVDQIVGRGPAMADKDRSKGPAEAELPEDPSMMGRLGKVEKQVLSMEKKLDFLVNIYMQRMGVPPAETEAYFGAKEPEPAPPYHSPEDSRDHGGRNCIIKLIRSASSTGQKSFAAPPAVPPAQCPPSTSWQQQCHARQGHGTSPSGDPGSLVRIPPPPTHERSLSAYSGGHRASTEFLRQEDAPACRPHEAGLRDSDTSISIPSVDHEELERSFSGFSISQSKENLDALNSCYAAVAPCAKVRPYIAEGESDTDSDLCTPCGPPPRSATGEGPFGDVGWPGPRK", "length": 854, "header": "tr|A0A287BSH1-1|A0A287BSH1_PIG Isoform 1 of Potassium voltage-gated channel subfamily Q member 2 OS=Sus scrofa OX=9823 GN=KCNQ2 PE=4 SV=1 CANONICAL=A0A287BSH1-1" }, "isoforms": [ { "isoform_ac": "A0A286ZS06-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSH1/entry#A0A286ZS06-1", "sequence": { "sequence": "MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAGGAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLVASIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQYYERTVTVPMYSSQTQTYGASRLIPPLNQLELLRNLKSKSGLAFRKEPQPEPCPSQGRRCRKSLCGCCSGHASQKVSLKDRVFSSPRGVAAKGKGSPQAQTVRRSPSADQSLEDSPSKVPKSWSFGERGRARQAFRARGAASRQNSEEASLPGEDVADDNKSCNCEFVTEDLTPGLKVSIRAVCVMRFLVSKRKFKESLRPYDVMDVIEQYSAGHLDMLSRIKNLQSRVDQIVGRGPAMADKDRSKGPAEAELPEDPSMMGRLGKVEKQVLSMEKKLDFLVNIYMQRMGVPPAETEAYFGAKEPEPAPPYHSPEDSRDHGGRNCIIKLIRSASSTGQKSFAAPPAVPPAQCPPSTSWQQQCHARQGHGTSPSGDPGSLVRIPPPPTHERSLSAYSGGHRASTEFLRQEDAPACRPHEAGLRDSDTSISIPSVDHEELERSFSGFSISQSKENLDALNSCYAAVAPCAKVRPYIAEGESDTDSDLCTPCGPPPRSATGEGPFGDVGWPGPRK", "length": 872, "header": "tr|A0A286ZS06-1|A0A287BSH1_PIG Computationally mapped isoform of Potassium voltage-gated channel subfamily Q member 2 OS=Sus scrofa OX=9823 GN=KCNQ2 PE=4 SV=2 CANONICAL=A0A287BSH1-1" }, "locus": { "chromosome": "17", "start_pos": 62506287, "end_pos": 62463780, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050709.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050709.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034414.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034414.2" } ] } }, { "isoform_ac": "A0A287AEY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSH1/entry#A0A287AEY0-1", "sequence": { "sequence": "MVLVASIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQYYERTVTVPMYRLIPPLNQLELLRNLKSKSGLAFRKEPQPEPCPSQKVSLKDRVFSSPRGVAAKGKGSPQAQTVRRSPSADQSLEDSPSKVPKSWSFGERGRARQAFRARGAASRQNSEEASLPGEDVADDNKSCNCEFVTEDLTPGLKVSIRAVCVMRFLVSKRKFKESLRPYDVMDVIEQYSAGHLDMLSRIKNLQSRVDQIVGRGPAMADKDRSKGPAEAELPEDPSMMGRLGKVEKQVLSMEKKLDFLVNIYMQRMGVPPAETEAYFGAKEPEPAPPYHSPEDSRDHGGRNCIIKLIRSASSTGQKSFAAPPAVPPAQCPPSTSWQQQCHARQGHGTSPSGDPGSLVRIPPPPTHERSLSAYSGGHRASTEFLRQEDAPACRPHEAGLRDSDTSISIPSVDHEELERSFSGFSISQSKENLDALNSCYAAVAPCAKVRPYIAEGESDTDSDLCTPCGPPPRSATGEGPFGDVGWPGPRK", "length": 671, "header": "tr|A0A287AEY0-1|A0A287BSH1_PIG Computationally mapped isoform of Potassium voltage-gated channel subfamily Q member 2 OS=Sus scrofa OX=9823 GN=KCNQ2 PE=4 SV=3 CANONICAL=A0A287BSH1-1" }, "locus": { "chromosome": "17", "start_pos": 62491260, "end_pos": 62463780, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044822.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044822.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042438.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042438.3" } ] } }, { "isoform_ac": "A0A287BSH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSH1/entry#A0A287BSH1-1", "sequence": { "sequence": "MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAGGAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLVASIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQYYERTVTVPMYSSQTQTYGASRLIPPLNQLELLRNLKSKSGLAFRKEPQPEPCPSQKVSLKDRVFSSPRGVAAKGKGSPQAQTVRRSPSADQSLEDSPSKVPKSWSFGERGRARQAFRARGAASRQNSEEASLPGEDVADDNKSCNCEFVTEDLTPGLKVSIRAVCVMRFLVSKRKFKESLRPYDVMDVIEQYSAGHLDMLSRIKNLQSRVDQIVGRGPAMADKDRSKGPAEAELPEDPSMMGRLGKVEKQVLSMEKKLDFLVNIYMQRMGVPPAETEAYFGAKEPEPAPPYHSPEDSRDHGGRNCIIKLIRSASSTGQKSFAAPPAVPPAQCPPSTSWQQQCHARQGHGTSPSGDPGSLVRIPPPPTHERSLSAYSGGHRASTEFLRQEDAPACRPHEAGLRDSDTSISIPSVDHEELERSFSGFSISQSKENLDALNSCYAAVAPCAKVRPYIAEGESDTDSDLCTPCGPPPRSATGEGPFGDVGWPGPRK", "length": 854, "header": "tr|A0A287BSH1-1|A0A287BSH1_PIG Isoform 1 of Potassium voltage-gated channel subfamily Q member 2 OS=Sus scrofa OX=9823 GN=KCNQ2 PE=4 SV=1 CANONICAL=A0A287BSH1-1" }, "locus": { "chromosome": "17", "start_pos": 62506287, "end_pos": 62463780, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052006.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052006.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059388.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059388.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZS06", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS06" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "E7FEC8-1", "protein_name": "Potassium voltage-gated channel subfamily KQT member 2 isoform X2", "gene_name": "kcnq2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVQKSRNGGVFPAAPQAEKKLKVGFVGVEAGAPECSRDGALLIAGAEASKRGSILSKQRSSISGKRPPKRNAFYRRLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEDALYILEIVTIVVFGVEYIVRIWSAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASISVLAAGTQGNVFATSAIRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLCLILASFLVYLAEKEDNEMFETYADALWWGLITLTTIGYGDKYPITWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQAAWRFYATNLNRTDLYSTWDYYERTISVPMYRLIPPLNQLDLLRNLKSKSGLSFRKEAQPEPSPSQKVSLKERVFSSPRNSATKGKNSPQGQQSLRRSPSANSIEDSPSKVPKSLSFGDRNRARQAFRFKGAASRQNSEEASLPGEDIVDDNKSCHCEFVPQDLTPGLKVTIRAVCIMRFMVSKRKFKESLRPYDVMDVIEQYSAGHLDMLARIKNLQSRVDQIVGRGAPITDKDRPKGTTDGELPEDPSMMGRLGKVEKQVMSMERKLDFLVNIYIQRMGIPQSETDAYFASKEPDPAPPYHSPVEHMVKSGSINKIIRSNSSAGQKNFDPPPSTCVNHHCPPSTSWHPQTAPEAGQGSSPMGDPSLVRIPPPPANERSSGGHSGGSRGHHHSRGTPAEDGRPASQAQAGAESDTSISIPSVDHEELERSFSGFSISQSKENLDFLNNAYFSGVSRCTKVRPYIAEGESDTDSDLCAPSPHSATGDGAYADRGWTGNK", "length": 840 }, "evidence": [ { "id": "A0A287BSH1", "url": "https://omabrowser.org/oma/group/A0A287BSH1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "O43526-1", "protein_name": "Potassium voltage-gated channel subfamily KQT member 2", "gene_name": "KCNQ2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVQKSRNGGVYPGPSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSILSKPRAGGAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQYYERTVTVPMYSSQTQTYGASRLIPPLNQLELLRNLKSKSGLAFRKDPPPEPSPSKGSPCRGPLCGCCPGRSSQKVSLKDRVFSSPRGVAAKGKGSPQAQTVRRSPSADQSLEDSPSKVPKSWSFGDRSRARQAFRIKGAASRQNSEEASLPGEDIVDDKSCPCEFVTEDLTPGLKVSIRAVCVMRFLVSKRKFKESLRPYDVMDVIEQYSAGHLDMLSRIKSLQSRVDQIVGRGPAITDKDRTKGPAEAELPEDPSMMGRLGKVEKQVLSMEKKLDFLVNIYMQRMGIPPTETEAYFGAKEPEPAPPYHSPEDSREHVDRHGCIVKIVRSSSSTGQKNFSAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVGDHGSLVRIPPPPAHERSLSAYGGGNRASMEFLRQEDTPGCRPPEGNLRDSDTSISIPSVDHEELERSFSGFSISQSKENLDALNSCYAAVAPCAKVRPYIAEGESDTDSDLCTPCGPPPRSATGEGPFGDVGWAGPRK", "length": 872 }, "evidence": [ { "id": "A0A287BSH1", "url": "https://omabrowser.org/oma/group/A0A287BSH1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z351-1", "protein_name": "Potassium voltage-gated channel subfamily KQT member 2", "gene_name": "Kcnq2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVQKSRNGGVYPGTSGEKKLKVGFVGLDPGAPDSTRDGALLIAGSEAPKRGSVLSKPRTGGAGAGKPPKRNAFYRKLQNFLYNVLERPRGWAFIYHAYVFLLVFSCLVLSVFSTIKEYEKSSEGALYILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAAGSQGNVFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFLCLILASFLVYLAEKGENDHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILGSGFALKVQEQHRPKHFEKRRNPAAGLIQSAWRFYATNLSRTDLHSTWQYYERTVTVPMYRLIPPLNQLELLRNLKSKSGLTFRKEPQPEPSPSQKVSLKDRVFSSPRGMAAKGKGSPQAQTVRRSPSADQSLDDSPSKVPKSWSFGDRSRTRQAFRIKGAASRQNSEEASLPGEDIVEDNKSCNCEFVTEDLTPGLKVSIRAVCVMRFLVSKRKFKESLRPYDVMDVIEQYSAGHLDMLSRIKSLQSRIDMIVGPPPPSTPRDKKYPTKGPTAPSRESPQYSPRVDHIVGRGPTITDKDRTKGPAETELPEDPSMMGRLGKVEKQVLSMEKKLDFLVSIYTQRMGIPPAETEAYFGAKEPEPAPPYHSPEDSRDHADKHGCIIKIVRSTSSTGQRNYAAPPAIPPAQCPPSTSWQQSHQRHGTSPVGDHGSLVLRLERSAGMMSCH", "length": 759 }, "evidence": [ { "id": "A0A287BSH1", "url": "https://omabrowser.org/oma/group/A0A287BSH1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calmodulin binding", "id": "GO:0005516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005516", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSH1" } ], "pmid": "" }, { "name": "ankyrin binding", "id": "GO:0030506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030506", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSH1" } ], "pmid": "" }, { "name": "voltage-gated potassium channel activity", "id": "GO:0005249", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005249", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSH1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "voltage-gated potassium channel complex", "id": "GO:0008076", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008076", "evidence": [ { 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"id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02136", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02136", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001192334", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001192334", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZTN5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZTN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTN5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAD3", "url": "https://www.uniprot.org/uniprotkb/A0A287AAD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAD3-1", "url": 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Isoform 1 of Ras GTPase-activating protein-binding protein 1 OS=Sus scrofa OX=9823 GN=G3BP1 PE=1 SV=1 CANONICAL=A0A480DPE1-1" }, "isoforms": [ { "isoform_ac": "A0A286ZTN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1/entry#A0A286ZTN5-1", "sequence": { "sequence": "MGGGGHESAMRISGLGKQNFFLPQVELTKAMVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEPVAEPEPDPEPEPEQEPVSEVQEEKSEPVLEEAAPEDVQKSSSPAPADIAQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESQIPPQRPQRDQRVREQRINVPPQRGPRPVREAGEQGDVEPRRIVRHPDSHQLFIGNLPHEVDKLELKDFFQNYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQKPGFGVGRGLTPRQ", "length": 495, "header": "tr|A0A286ZTN5-1|A0A480DPE1_PIG Computationally mapped isoform of Ras GTPase-activating protein-binding protein 1 OS=Sus scrofa OX=9823 GN=G3BP1 PE=1 SV=2 CANONICAL=A0A480DPE1-1" }, "locus": { "chromosome": "16", "start_pos": 71275549, "end_pos": 71250968, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046088.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046088.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034840.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034840.2" } ] } }, { "isoform_ac": "A0A287AAD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1/entry#A0A287AAD3-1", "sequence": { "sequence": "MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEPVAEPEPDPEPEPEQEPVSEVQEEKSEPVLEEAAPEDVQKSSSPAPADIAQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESQIPPQRPQRDQRVREQRINVPPQRGPRPVREAGEQGDVEPRRIVRHPDSHQLFIGNLPHEVDKLELKDFFQNYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGMVQKPGFGVGRGLTPRQ", "length": 449, "header": "tr|A0A287AAD3-1|A0A480DPE1_PIG Computationally mapped isoform of Ras GTPase-activating protein-binding protein 1 OS=Sus scrofa OX=9823 GN=G3BP1 PE=1 SV=1 CANONICAL=A0A480DPE1-1" }, "locus": { "chromosome": "16", "start_pos": 71266590, "end_pos": 71250968, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059335.2", "url": "https://www.ensembl.org/id/ENSSSCT00000059335.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040758.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040758.2" } ] } }, { "isoform_ac": "A0A480DPE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1/entry#A0A480DPE1-1", "sequence": { "sequence": "MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEPVAEPEPDPEPEPEQEPVSEVQEEKSEPVLEEAAPEDVQKSSSPAPADIAQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESQIPPQRPQRDQRVREQRINVPPQRGPRPVREAGEQGDVEPRRIVRHPDSHQLFIGNLPHEVDKLELKDFFQNYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQKPGFGVGRGLTPRQ", "length": 465, "header": "tr|A0A480DPE1-1|A0A480DPE1_PIG Isoform 1 of Ras GTPase-activating protein-binding protein 1 OS=Sus scrofa OX=9823 GN=G3BP1 PE=1 SV=1 CANONICAL=A0A480DPE1-1" }, "locus": { "chromosome": "16", "start_pos": 71266590, "end_pos": 71250968, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080165.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080165.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072466.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072466.2" } ] } }, { "isoform_ac": "A0A5G2QTF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1/entry#A0A5G2QTF3-1", "sequence": { "sequence": "MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEPVAEPEPDPEPEPEQEPVSEVQEEKSEPVLEEAAPEDVQKSSSPAPADIAQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESQIPPQRPQRDQRVREQRINVPPQRGPRPVREAGEQGDVEPRRIVRHPDSHQLFIGNLPHEVDKLELKDFFQNYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRVSSFPS", "length": 403, "header": "tr|A0A5G2QTF3-1|A0A480DPE1_PIG Computationally mapped isoform of Ras GTPase-activating protein-binding protein 1 OS=Sus scrofa OX=9823 GN=G3BP1 PE=1 SV=1 CANONICAL=A0A480DPE1-1" }, "locus": { "chromosome": "16", "start_pos": 71266590, "end_pos": 71253664, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087966.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087966.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061440.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061440.1" } ] } }, { "isoform_ac": "A0A5G2RH50-1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1/entry#A0A5G2RH50-1", "sequence": { "sequence": "MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEPVAEPEPDPEPEPEQEPVSEVQEEKSEPVLEEAAPEDVQKSSSPAPADIAQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESQIPPQRPQRDQRVREQRINVPPQRGPRPVREAGEQGDVEPRRIVRHPDSHQLFIGNLPHEVDKLELKDFFQTHHVQR", "length": 366, "header": "tr|A0A5G2RH50-1|A0A480DPE1_PIG Computationally mapped isoform of Ras GTPase-activating protein-binding protein 1 OS=Sus scrofa OX=9823 GN=G3BP1 PE=1 SV=1 CANONICAL=A0A480DPE1-1" }, "locus": { "chromosome": "16", "start_pos": 71266590, "end_pos": 71251155, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067957.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067957.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074454.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074454.1" } ] } }, { "isoform_ac": "A0A8W4FA19-1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1/entry#A0A8W4FA19-1", "sequence": { "sequence": "SCGGGYRCGLDPLNILDFFLPQVELTKAMVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEPVAEPEPDPEPEPEQEPVSEVQEEKSEPVLEEAAPEDVQKSSSPAPADIAQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESQIPPQRPQRDQRVREQRINVPPQRGPRPVREAGEQGDVEPRRIVRHPDSHQLFIGNLPHEVDKLELKDFFQNYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQKPGFGVGRGLTPRQ", "length": 493, "header": "tr|A0A8W4FA19-1|A0A480DPE1_PIG Computationally mapped isoform of Ras GTPase-activating protein-binding protein 1 OS=Sus scrofa OX=9823 GN=G3BP1 PE=1 SV=1 CANONICAL=A0A480DPE1-1" }, "locus": { "chromosome": "16", "start_pos": 71267311, "end_pos": 71250968, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097266.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097266.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075142.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075142.1" } ] } }, { "isoform_ac": "F1RQB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1/entry#F1RQB6-1", "sequence": { "sequence": "MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEPVAEPEPDPEPEPEQEPVSEVQEEKSEPVLEEAAPEDVQKSSSPAPADIAQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESQIPPQRPQRDQRVREQRINVPPQRGPRPVREAGEQGDVEPRRIVRHPDSHQLFIGNLPHEVDKLELKDFFQNYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRGQMKGA", "length": 403, "header": "tr|F1RQB6-1|A0A480DPE1_PIG Computationally mapped isoform of Ras GTPase-activating protein-binding protein 1 OS=Sus scrofa OX=9823 GN=G3BP1 PE=1 SV=3 CANONICAL=A0A480DPE1-1" }, "locus": { "chromosome": "16", "start_pos": 71266590, "end_pos": 71236729, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018595.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018595.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018094.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018094.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Dissecting the molecular mechanisms that impair stress granule formation in aging cells.", "journal": "Biochimica et biophysica acta. Molecular cell research", "date": "2017-03", "authors": "Moujaber Ossama, Mahboubi Hicham, Kodiha Mohamed, Bouttier Manuella, Bednarz Klaudia, Bakshi Ragini, White John, Larose Louise, Colmegna In\u00e9s, Stochaj Ursula", "evidence": [ { "database": "RefSeq", "id": "NP_001192334", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001192334" } ], "reference": [ { "type": "PubMed", "id": "27965113", "url": "https://glygen.org/publication/PubMed/27965113" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTF3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTF3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513766", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513766", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZYS7-1", "protein_name": "Ras GTPase-activating protein-binding protein 1", "gene_name": "G3bp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQSPEVVADDSGTFYDQTVSNDLEEHLEEPVVEPEPEPEPEPEPEPVSDIQEDKPEPALEEAAPEDVQKSASPAPADVAPAQEDLRTFSWASVTSKNLPPSGAVPVTGTPPHVVKVPASQPRPESKPDSQIPPQRPQRDQRAREQRINIPPQRGPRPIREAGEPGDVEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLNNRPIMFRGAVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGPSGGMRGPPRGGMVQKPGFGVGRGITTPRQ", "length": 465 }, "evidence": [ { "id": "A0A480DPE1", "url": "https://omabrowser.org/oma/group/A0A480DPE1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P97855-1", "protein_name": "Ras GTPase-activating protein-binding protein 1", "gene_name": "G3bp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEPVVEPEPEPEPEPEPEPVSDIQEDKPEAALEEAAPDDVQKSTSPAPADVAPAQEDLRTFSWASVTSKNLPPSGAVPVTGTPPHVVKVPASQPRPESKPDSQIPPQRPQRDQRVREQRINIPPQRGPRPIREAGEPGDVEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQNFGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGAVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGPSGGMRGPPRGGMVQKPGFGVGRGITTPRQ", "length": 465 }, "evidence": [ { "id": "A0A480DPE1", "url": "https://omabrowser.org/oma/group/A0A480DPE1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q32LC7-1", "protein_name": "Ras GTPase-activating protein-binding protein 1", "gene_name": "G3BP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGGFITEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEPVAEPEPEPEPEPEQEPVSEVQEEKSEPVLEETAPEDVQKSSSPAPADIAQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPLQRPQRDQRVREQRINVPPQRGPRPVREAGEQGDVEPRRIVRHPDSHQLFIGNLPHEVDKSELKDFFQNYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQKPGFGVGRSIAPRQ", "length": 465 }, "evidence": [ { "id": "A0A480DPE1", "url": "https://omabrowser.org/oma/group/A0A480DPE1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9FND0-1", "protein_name": "Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein", "gene_name": "MRH10.6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATPYPGATQVGSYFVGQYYQVLQQQPDLIHQFYSEPSRAIRIDGDSTETANSLLHIHNMVMSLNFTAIEVKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVLSDVFLFVDEGTVYYHQPSYLSEIKHEAQLNPPTRHPDPQVSDYVLEEEASDYVNAVQIKDDLVDKYSLQEDQHQPQHEDYEDEVAIEETPREEVAVDVVHEHRAAPVEEPVGEKSKMSYASILKVAKEAATVPVAATQPSYNKSSQDINEWDQPMRTPSPQLAAPLAPIQQSNSSTYVSDYGAEAEDGSGFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNPAGVRGARRGGGRGRGGYPTEAPRGRFGGRGSGRGNQDGGDYRPRGNGYYRGGGR", "length": 450 }, "evidence": [ { "id": "A0A480DPE1", "url": "https://omabrowser.org/oma/group/A0A480DPE1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 11, "go_terms": [ { "name": "DNA/RNA helicase activity", "id": "GO:0033677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033677", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "ribosomal small subunit binding", "id": "GO:0043024", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043024", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "endonuclease activity", "id": "GO:0004519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004519", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "DNA helicase activity", "id": "GO:0003678", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003678", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "RNA helicase activity", "id": "GO:0003724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003724", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "molecular condensate scaffold activity", "id": "GO:0140693", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140693", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "perikaryon", "id": "GO:0043204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043204", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "defense response to virus", "id": "GO:0051607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051607", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "stress granule assembly", "id": "GO:0034063", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034063", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" }, { "name": "positive regulation of type I interferon production", "id": "GO:0032481", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032481", "evidence": [ { "database": "UniProtKB", "id": "A0A480DPE1", "url": "https://www.uniprot.org/uniprotkb/A0A480DPE1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" }, { "start_pos": 69, "end_pos": 71, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], 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"https://www.uniprot.org/uniprotkb/A0A287BST9" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A287BST9", "url": "https://www.uniprot.org/uniprotkb/A0A287BST9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hemi-methylated DNA-binding", "id": "GO:0044729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044729", "evidence": [ { "database": "UniProtKB", "id": "A0A287BST9", "url": "https://www.uniprot.org/uniprotkb/A0A287BST9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" }, { "start_pos": 330, "end_pos": 332, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BST9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 373, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BST9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BST9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BST9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BST9" }, { "id": "PF10497", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10497" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Zinc-finger", "eco_id": "ECO_0000259", "start_pos": 265, "end_pos": 362, "start_aa": "Asn", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], 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[9823]" } ], "gene": [ { "name": "DNAJC6", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4", "locus": { "chromosome": "6", "start_pos": 146989351, "end_pos": 147155131, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003807", "url": "https://www.ensembl.org/id/ENSSSCG00000003807" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003807", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003807", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14563", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14563", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "406190", "url": "https://www.ncbi.nlm.nih.gov/gene/406190", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000387", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000387", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029023", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029023", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "XPELDAC", "url": "https://omabrowser.org/oma/group/XPELDAC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZU51", "url": "https://www.orthodb.org/?gene=A0A286ZU51", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZV59", "url": "https://www.orthodb.org/?gene=A0A286ZV59", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A480ZET4", "url": "https://www.orthodb.org/?gene=A0A480ZET4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23172", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23172", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23172:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23172:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10409", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10409", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8856828", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856828", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005656209", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005656209", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZU51", "url": "https://www.uniprot.org/uniprotkb/A0A286ZU51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZU51-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZU51-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZV59", "url": "https://www.uniprot.org/uniprotkb/A0A286ZV59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZV59-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZV59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGR3", "url": "https://www.uniprot.org/uniprotkb/A0A287BGR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGR3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480ZET4", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480ZET4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPB1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPB1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPU3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPU3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKDSENKGASSPDMEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVTSYTKGDLDFTYVTSRIIVMSFPLDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQRNGCRPYCDVLIGETKIYTTCADFERMKEYRVQDGKIFIPLSITVQGDVVVSMYHLRSTIGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDVELQPHDKMIDLTPPWEHYCTKDVNPSILFSSHQEHQDTLVLGGQAPIDIPPDNPRHFGQGGFFSTLCWQDQKSEKSFCEEDHAALVNQESEQSDDELLTLSSPHGNANGDKAHGARKPSKKQQEPAAPPPPEDVDLLGLEGSAVSKNFSSPAAPPTNSELLSDLFGGGGAAGPAQAGQSGVEDVFHPSGPTSTQSTPRRSATSTSASPTLRAGEGAAFDPFGGPSKPSGQDLLGSFLNTGSASSDPFLQPTRSPSPTVHASSTPAVNIQPDVAGGWDWHTKPGGFGMGSKSAATSPTGSSHGTPTHQNKPQTLDPFADLGTLGGSSFASKPSTPTGLGGGFPPLSSPQKASPQPMGGGWQQGGGYNWQQTQSKPQPSMPHASPQHRPNYNVSFSSMPGGQNERGKGSANVEGKQKAADFEDLLSGQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY", "length": 913, "header": "tr|A0A480ZET4-1|A0A480ZET4_PIG Isoform 1 of Auxilin OS=Sus scrofa OX=9823 GN=DNAJC6 PE=1 SV=1 CANONICAL=A0A480ZET4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZU51-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4/entry#A0A286ZU51-1", "sequence": { "sequence": "MGATEKGGKKSRRLFSSLRPWKTTRRLWRTRSASKAAQGASSPDMEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVTSYTKGDLDFTYVTSRIIVMSFPLDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQRNGCRPYCDVLIGETKIYTTCADFERMKEYRVQDGKIFIPLSITVQGDVVVSMYHLRSTIGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDVELQPHDKMIDLTPPWEHYCTKDVNPSILFSSHQEHQDTLVLGGQAPIDIPPDNPRHFGQGGFFSTLCWQDQKSEKSFCEEDHAALVNQESEQSDDELLTLSSPHGNANGDKAHGARKPSKKQQEPAAPPPPEDVDLLGLEGSAVSKNFSSPAAPPTNSELLSDLFGGGGAAGPAQAGQSGVEDVFHPSGPTSTQSTPRRSATSTSASPTLRAGEGAAFDPFGGPSKPSGQDLLGSFLNTGSASSDPFLQPTRSPSPTVHASSTPAVNIQPDVAGGWDWHTKPGGFGMGSKSAATSPTGSSHGTPTHQNKPQTLDPFADLGTLGGSSFASKPSTPTGLGGGFPPLSSPQKASPQPMGGGWQQGGGYNWQQTQSKPQPSMPHASPQHRPNYNVSFSSMPGGQNERGKGSANVEGKQKAADFEDLLSGQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY", "length": 944, "header": "tr|A0A286ZU51-1|A0A480ZET4_PIG Computationally mapped isoform of Auxilin OS=Sus scrofa OX=9823 GN=DNAJC6 PE=1 SV=1 CANONICAL=A0A480ZET4-1" }, "locus": { "chromosome": "6", "start_pos": 147154979, "end_pos": 146992470, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041098.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041098.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035112.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035112.1" } ] } }, { "isoform_ac": "A0A286ZV59-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4/entry#A0A286ZV59-1", "sequence": { "sequence": "MSLLGSYRKKTSNDGYESLQLVDSNGDLSAGSGGGGGKPRVNAGVAAAAARSPARQPQDRASTMDSSGASSPDMEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVTSYTKGDLDFTYVTSRIIVMSFPLDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQRNGCRPYCDVLIGETKIYTTCADFERMKEYRVQDGKIFIPLSITVQGDVVVSMYHLRSTIGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDVELQPHDKMIDLTPPWEHYCTKDVNPSILFSSHQEHQDTLVLGGQAPIDIPPDNPRHFGQGGFFSTLCWQDQKSEKSFCEEDHAALVNQESEQSDDELLTLSSPHGNANGDKAHGARKPSKKQQEPAAPPPPEDVDLLGLEGSAVSKNFSSPAAPPTNSELLSDLFGGGGAAGPAQAGQSGVEDVFHPSGPTSTQSTPRRSATSTSASPTLRAGEGAAFDPFGGPSKPSGQDLLGSFLNTGSASSDPFLQPTRSPSPTVHASSTPAVNIQPDVAGGWDWHTKPGGFGMGSKSAATSPTGSSHGTPTHQNKPQTLDPFADLGTLGGSSFASKPSTPTGLGGGFPPLSSPQKASPQPMGGGWQQGGGYNWQQTQSKPQPSMPHASPQHRPNYNVSFSSMPGGQNERGKGSANVEGKQKAADFEDLLSGQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY", "length": 973, "header": "tr|A0A286ZV59-1|A0A480ZET4_PIG Computationally mapped isoform of Auxilin OS=Sus scrofa OX=9823 GN=DNAJC6 PE=1 SV=2 CANONICAL=A0A480ZET4-1" }, "locus": { "chromosome": "6", "start_pos": 147097804, "end_pos": 146992470, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052311.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052311.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035340.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035340.2" } ] } }, { "isoform_ac": "A0A287BGR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4/entry#A0A287BGR3-1", "sequence": { "sequence": "MGATEKGGKKSRRLFSSLRPWKTTRRLWRTRSASKAAQENVAHLLRDSALHQAPRTNHLIPEKYGASSPDMEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVTSYTKGDLDFTYVTSRIIVMSFPLDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQRNGCRPYCDVLIGETKIYTTCADFERMKEYRVQDGKIFIPLSITVQGDVVVSMYHLRSTIGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDVELQPHDKMIDLTPPWEHYCTKDVNPSILFSSHQEHQDTLVLGGQAPIDIPPDNPRHFGQGGFFSTLCWQDQKSEKSFCEEDHAALVNQESEQSDDELLTLSSPHGNANGDKAHGARKPSKKQQEPAAPPPPEDVDLLGLEGSAVSKNFSSPAAPPTNSELLSDLFGGGGAAGPAQAGQSGVEDVFHPSGPTSTQSTPRRSATSTSASPTLRAGEGAAFDPFGGPSKPSGQDLLGSFLNTGSASSDPFLQPTRSPSPTVHASSTPAVNIQPDVAGGWDWHTKPGGFGMGSKSAATSPTGSSHGTPTHQNKPQTLDPFADLGTLGGSSFASKPSTPTGLGGGFPPLSSPQKASPQPMGGGWQQGGGYNWQQTQSKPQPSMPHASPQHRPNYNVSFSSMPGGQNERGKGSANVEGKQKAADFEDLLSGQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY", "length": 970, "header": "tr|A0A287BGR3-1|A0A480ZET4_PIG Computationally mapped isoform of Auxilin OS=Sus scrofa OX=9823 GN=DNAJC6 PE=1 SV=2 CANONICAL=A0A480ZET4-1" }, "locus": { "chromosome": "6", "start_pos": 147154979, "end_pos": 146992470, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064141.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064141.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055725.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055725.2" } ] } }, { "isoform_ac": "A0A480ZET4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4/entry#A0A480ZET4-1", "sequence": { "sequence": "MKDSENKGASSPDMEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVTSYTKGDLDFTYVTSRIIVMSFPLDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQRNGCRPYCDVLIGETKIYTTCADFERMKEYRVQDGKIFIPLSITVQGDVVVSMYHLRSTIGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDVELQPHDKMIDLTPPWEHYCTKDVNPSILFSSHQEHQDTLVLGGQAPIDIPPDNPRHFGQGGFFSTLCWQDQKSEKSFCEEDHAALVNQESEQSDDELLTLSSPHGNANGDKAHGARKPSKKQQEPAAPPPPEDVDLLGLEGSAVSKNFSSPAAPPTNSELLSDLFGGGGAAGPAQAGQSGVEDVFHPSGPTSTQSTPRRSATSTSASPTLRAGEGAAFDPFGGPSKPSGQDLLGSFLNTGSASSDPFLQPTRSPSPTVHASSTPAVNIQPDVAGGWDWHTKPGGFGMGSKSAATSPTGSSHGTPTHQNKPQTLDPFADLGTLGGSSFASKPSTPTGLGGGFPPLSSPQKASPQPMGGGWQQGGGYNWQQTQSKPQPSMPHASPQHRPNYNVSFSSMPGGQNERGKGSANVEGKQKAADFEDLLSGQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY", "length": 913, "header": "tr|A0A480ZET4-1|A0A480ZET4_PIG Isoform 1 of Auxilin OS=Sus scrofa OX=9823 GN=DNAJC6 PE=1 SV=1 CANONICAL=A0A480ZET4-1" }, "locus": { "chromosome": "6", "start_pos": 147144946, "end_pos": 146992470, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043320.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043320.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044192.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044192.3" } ] } }, { "isoform_ac": "A0A8W4FPB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4/entry#A0A8W4FPB1-1", "sequence": { "sequence": "MPFLENVAHLLRDSALHQAPRTNHLIPEKYGASSPDMEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVTSYTKGDLDFTYVTSRIIVMSFPLDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQRNGCRPYCDVLIGETKIYTTCADFERMKEYRVQDGKIFIPLSITVQGDVVVSMYHLRSTIGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDVELQPHDKMIDLTPPWEHYCTKDVNPSILFSSHQEHQDTLVLGGQAPIDIPPDNPRHFGQGGFFSTLCWQDQKSEKSFCEEDHAALVNQESEQSDDELLTLSSPHGNANGDKAHGARKPSKKQQEPAAPPPPEDVDLLGLEGSAVSKNFSSPAAPPTNSELLSDLFGGGGAAGPAQAGQSGVEDVFHPSGPTSTQSTPRRSATSTSASPTLRAGEGAAFDPFGGPSKPSGQDLLGSFLNTGSASSDPFLQPTRSPSPTVHASSTPAVNIQPDVAGGWDWHTKPGGFGMGSKSAATSPTGSSHGTPTHQNKPQTLDPFADLGTLGGSSFASKPSTPTGLGGGFPPLSSPQKASPQPMGGGWQQGGGYNWQQTQSKPQPSMPHASPQHRPNYNVSFSSMPGGQNERGKGSANVEGKQKAADFEDLLSGQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY", "length": 936, "header": "tr|A0A8W4FPB1-1|A0A480ZET4_PIG Computationally mapped isoform of Auxilin OS=Sus scrofa OX=9823 GN=DNAJC6 PE=1 SV=1 CANONICAL=A0A480ZET4-1" }, "locus": { "chromosome": "6", "start_pos": 147104308, "end_pos": 146992470, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106091.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106091.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081205.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081205.1" } ] } }, { "isoform_ac": "A0A8W4FPU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4/entry#A0A8W4FPU3-1", "sequence": { "sequence": "MGATEKGGKKSRRLFSSLRPWKTTRRLWRTRSASKAAQGASSPDMEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVTSYTKGDLDFTYVTSRIIVMSFPLDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQRNGCRPYCDVLIGETKIYTTCADFERMKEYRVQDGKIFIPLSITVQGDVVVSMYHLRSTIGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDVELQPHDKMIDLTPPWEHYCTKDVNPSILFSSHQEHQDTLVLGGQAPIDIPPDNPRHFGQGGFFSTLCWQDQKSEKSFCEEDHAALVNQESEQSDDELLTLSSPHGNANGDKAHGARKPSKKQQEPAAPPPPEDVDLLGLEGSAVSKNFSSPAAPPTNSELLSDLFGGGGAAGPAQAGQSGVEDVFHPSGPTSTQSTPRRSATSTSASPTLRAGEGAAFDPFGGPSKPSGQDLLGSFLNTGSASSDPFLQPTRSPSPTVHASSTPAVNIQPDVAGGWDWHTKPGGFGMGSKSAATSPTGSSHGTPTHQNKPQTLDPFADLGTLGGSSFASKPSTPTGLGGGFPPLSSPQKASPQPMGGGWQQGGGYNWQQTQSKPQPSMPHASPQHRPNYNVSFSSMPGGQNERGKGSANVEGKQKAADFEDLLSGQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPDKVSRTCPPTSYEVYPDLRMS", "length": 930, "header": "tr|A0A8W4FPU3-1|A0A480ZET4_PIG Computationally mapped isoform of Auxilin OS=Sus scrofa OX=9823 GN=DNAJC6 PE=1 SV=1 CANONICAL=A0A480ZET4-1" }, "locus": { "chromosome": "6", "start_pos": 147154979, "end_pos": 146994112, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102355.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102355.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080969.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080969.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 187, "start_aa": "Thr", "end_pos": 187, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr187", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 554, "start_aa": "Thr", "end_pos": 554, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr554", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZV59", "url": "https://www.uniprot.org/uniprotkb/A0A286ZV59" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8856828", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856828", "resource": "Reactome", "description": "Clathrin-mediated endocytosis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LZH5-1", "protein_name": "Auxilin", "gene_name": "DNAJC6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKDSENKGASSPDMEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVTSYTKGDLDFTYVTSRIIVMSFPLDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAIRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQRNGCRPYCDVLIGETKIYTTCADFERMKEYRVQDGKIFIPLSITVQGDVVVSMYHLRSTIGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDVELQPHDKVMELTPPWEHYCTKDVNPSILFSSHQEHQDTLVLGGQAPIDIPPDNPRHFGQGGFFSTLCWQDQKSEKSFCEEDHAALVNQESEQSDDELLTLSSPHGNANGDKPHAARKPSKKQQEPAAPAPPEDVDLLGLEGSAVSKNFSSPAAPPSNSELLSDLFGGGGAAGPVQSGQSGVDDVFHPSGPTSTQSTPRRSATSTSASPTLRVGEGATFDPFGAPSKPSGQDLLGSFLNTASASSDPFLQPTRSPSPTVHASSTPAVNIQPDVSGAWDWHTKPGGFGMGSKSAATSPTGSSHGTPTHQNKPQTLDPFADLGTLGGSSFASKPSTPTGLGGGFPPLSSPQKASPQPMGGGWQQGGGYNWQQTQSKPQSSMPHSSPQNRPNYNVSFSSMPGGQNERGKAAANLEGKQKAADFEDLLSGQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY", "length": 913 }, "evidence": [ { "id": "A0A480ZET4", "url": "https://omabrowser.org/oma/group/A0A480ZET4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8I6A6P4-1", "protein_name": "Auxilin", "gene_name": "Dnajc6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLGFISGASSPDMEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVSSYTKGDLDFTYVTSRIIVMSFPMDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKAITVSPIPFFNKQRNGCRPYCDVLIGETKIFSTCTDFERMKEYRVQDGKIFIPLNITVQGDVIVSMYHLRSTIGSRLQAKVTNTQIFQLQFHSGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDIEVQPQDKVIDLTPPWEHYCTKDVNPSILFSSQQEHQDTLALGGQAPADLPPDHPRNLGQGGFFASLCWQDQKSEKSRCEEDHAALVNQESEQSDDELLTLSSPHGNADGDKPHGAKKPGKKQQEPAAPPPPEEVDLLGLEGSDVSTNFSPLAAPPSNSELLSDLFGGGGATGPAQAGQVGVEDVFHPSGPASAQSTPRRATTSASASPTLRVGEGATFDPFGAPAKPPGQDLLGSFLNTSNASSDPFLQPTRSPSPTVHASSTPAVNIQPDIAGGWDWHAKPGGFGMGSKSAATSPTGSTHGTPTHQSKPQTLDPFADLGTLGSSSFASKPTTPTGLGGGFPPLSSPQKASPQPMGGGWQQPAGYNWQQAQPKPQSSMPHSSPQNRPNYNVSFSAMPAGQSDRGKGSTNLEGKQKAADFEDLLSSQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY", "length": 912 }, "evidence": [ { "id": "A0A480ZET4", "url": "https://omabrowser.org/oma/group/A0A480ZET4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0ZQW8-1", "protein_name": "Auxilin", "gene_name": "DNAJC6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSLLGGYRKKPGGDGYESLQLVESGAEGGGGGPGAVGAGGRSPARQQQQQHRADGSTMDSSGASSPDMESSYGGGLLDMVKGGAGRLFSNLKDNLKDTLKDTSSKVMQSVASYTKGELDISYITSRIIVMSFPAEGVELGFRNHIEDVRTFLDSRHPDHYTVFNLSPKYYRSAKFHNRVSECSWPVRQAPSLHNLYAVCKNMHNWLQQNPKNVCVIHCMDGRAASAVLVSAMFCFCHLFSNPGPAMQLLNTKRPGIVLWPSHRRYIGYICDLIADKPVIPHCKPLTIKSVTLSPVPCFNKQRNGCRPFCDILSGETRILTTSQEYERMKEYRVQEGKVLIPLGATVHGDVVVSVYHMRSTIGGRLQAKMTNTQIFQIQFHTGFIALGTTTLKFTKPELDACDSPDKYPQLFHVILEIEIQSTDRQTELTPPWENFTTKDINPTILFSSHQEHQDTLALAGKGPTDSPQDNIRNVGQSAFFSSLSWQDQKSDKSSSHPTSEDRAALVHEESEQSDDELLSLSSQHSNASGDKPHGTPKHGKKQQELSAPPPPEDVDLLGLDGSPMSKTFPSQPAAAPSNSDLLSDLFGVGGPGSQGQSTQPAADEVFHMAGPGSVQSTPRHSAASASPSPSPRVGEASAFDPFGSSPKQAGPDLLGSFLGSSNVPGDPFLQATRSPSPTVHSDPFHMASSTPTVSIQPDVSGGWDWPNKPGGLGMGSKSAATSPTGSLHSTPTHQPKPQTLDPFADLGTLGASLAGGPSFASKPTTPTGMGGGFPPSPQKPSPQPMGSSWQQGAGYGWQQAQPKAQPGMPHASPQNKPNYNVSFSAMPGAQNERGKGPANADSKPKVSADFEDLLSGQGFNAHKDKKGPKTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVSMADLVTPEQVKKVYRRAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY", "length": 981 }, "evidence": [ { "id": "A0A480ZET4", "url": "https://omabrowser.org/oma/group/A0A480ZET4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O75061-1", "protein_name": "Auxilin", "gene_name": "DNAJC6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKDSENKGASSPDMEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVTSYTKGDLDFTYVTSRIIVMSFPLDNVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAIRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPIPFFNKQRNGCRPYCDVLIGETKIYSTCTDFERMKEYRVQDGKIFIPLNITVQGDVVVSMYHLRSTIGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDVELQPHDKVIDLTPPWEHYCTKDVNPSILFSSHQEHQDTLALGGQAPIDIPPDNPRHYGQSGFFASLCWQDQKSEKSFCEEDHAALVNQESEQSDDELLTLSSPHGNANGDKPHGVKKPSKKQQEPAAPPPPEDVDLLGLEGSAMSNSFSPPAAPPTNSELLSDLFGGGGAAGPTQAGQSGVEDVFHPSGPASTQSTPRRSATSTSASPTLRVGEGATFDPFGAPSKPSGQDLLGSFLNTSSASSDPFLQPTRSPSPTVHASSTPAVNIQPDVSGGWDWHAKPGGFGMGSKSAATSPTGSSHGTPTHQSKPQTLDPFADLGTLGSSSFASKPTTPTGLGGGFPPLSSPQKASPQPMGGGWQQGGAYNWQQPQPKPQPSMPHSSPQNRPNYNVSFSAMPGGQNERGKGSSNLEGKQKAADFEDLLSGQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY", "length": 913 }, "evidence": [ { "id": "A0A480ZET4", "url": "https://omabrowser.org/oma/group/A0A480ZET4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80TZ3-1", "protein_name": "Auxilin", "gene_name": "Dnajc6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTNPKSGVAESAGLACSRAAAGENRMKDSENKGASSPDMEPSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVSSYTKGDLDFTYVTSRIIVMSFPVDSVDIGFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKAITVSPVPFFNKQRNGCRPYCDVLIGETKIYSTCTDFERMKEYRVQDGKIFIPLNITVQGDVIVSMYHLRSTIGSRLQAKVTNTQIFQLQFHSGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDIEVQPQDKVIDLTPPWEHYCTKDVNPSILFSSQQEHQDTLALGGQAPADLPPDHPRNLGQGGFFASLCWQDQKSEKSRCEEDHAALVNQESEQSDDELLTLSSPHGNAEGDKPHGAKKPGKKQQEPAAPPPPEEVDLLGLEGSDVSTNFSSLAAPPSNSELLSDLFGGVGATGPAQAGQAGVEDVFHPSGPVSAQSTPRRTATSASASPTLRVGEGATFDPFGAPAKPPGQDLLGSFLNTSSASSDPFLQPTRSPSPTVHASSTPAVNIQPDIAGGWDWHTKPGGFGMGSKSAATSPTGSSHGTPTHQSKPQTLDPFADLGTLGSSSFASKPTTPTGLGGGFPPLSSPQKASPQPMGGGWQQPAGYNWQQTQSKPQSSMPHSSPQNRPNYNVSFSAMPAGQSERGKGSTNLEGKQKAADFEDLLSSQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRRAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY", "length": 938 }, "evidence": [ { "id": "A0A480ZET4", "url": "https://omabrowser.org/oma/group/A0A480ZET4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "postsynaptic density", "id": "GO:0014069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014069", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZET4", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4" } ], "pmid": "" }, { "name": "clathrin-coated vesicle", "id": "GO:0030136", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030136", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZET4", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4" } ], "pmid": "" }, { "name": "extrinsic component of presynaptic endocytic zone membrane", "id": "GO:0098894", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098894", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZET4", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZET4", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4" } ], "pmid": "" }, { "name": "vesicle", "id": "GO:0031982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031982", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZET4", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4" } ], "pmid": "" }, { "name": "presynapse", "id": "GO:0098793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098793", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZET4", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "SH3 domain binding", "id": "GO:0017124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017124", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZET4", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4" } ], "pmid": "" }, { "name": "phosphoprotein phosphatase activity", "id": "GO:0004721", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004721", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZET4", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4" } ], "pmid": "" }, { "name": "clathrin binding", "id": "GO:0030276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030276", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZET4", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "clathrin-dependent endocytosis", "id": "GO:0072583", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072583", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZET4", "url": "https://www.uniprot.org/uniprotkb/A0A480ZET4" } ], "pmid": "" }, { "name": "synaptic vesicle uncoating", "id": "GO:0016191", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016191", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZET4", "url": 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}, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480VC18-1", "uniprot_ac": "A0A480VC18", "uniprot_id": "A0A480VC18_PIG", "mass": { "chemical_mass": 23460.0, "monoisotopic_mass": 23460.0 }, "refseq": {}, "gene_names": [ { "name": "SPRING1", "type": "recommended", "evidence": [ { "id": "A0A480VC18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480VC18" } ] }, { "name": "C14H12orf49", "type": "synonym", "evidence": [ { "id": "A0A480VC18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480VC18" } ] } ], "protein_names": [ { "name": "SREBP regulating gene protein", "type": "recommended", "evidence": [ { "id": "A0A480VC18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480VC18/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480VC18", "url": "https://www.uniprot.org/uniprotkb/A0A480VC18" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPRING1", "url": "https://www.uniprot.org/uniprotkb/A0A480VC18", "locus": { "chromosome": "14", "start_pos": 35742739, "end_pos": 35705943, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035873", "url": "https://www.ensembl.org/id/ENSSSCG00000035873" } ] } } ], "crossref": [ { "id": "ENSSSCG00000035873", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035873", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100520051", "url": "https://www.ncbi.nlm.nih.gov/gene/100520051", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520051", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520051", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CNTTSHC", "url": "https://omabrowser.org/oma/group/CNTTSHC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480VC18", "url": "https://www.orthodb.org/?gene=A0A480VC18", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13481", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13481", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13481:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13481:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10218", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10218", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZVX5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZVX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVX5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480VC18", "url": "https://www.uniprot.org/uniprotkb/A0A480VC18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480VC18-1", "url": "https://www.uniprot.org/uniprotkb/A0A480VC18-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLTSTFKQEERAVRDRNLLQVQDHDQPIPWKVQFNLGNSSRPSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPGTKQYCCDGCLSNGCCSAYEYCVSCCLQPSKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYCYGESPPELFPA", "length": 205, "header": "tr|A0A480VC18-1|A0A480VC18_PIG Isoform 1 of SREBP regulating gene protein OS=Sus scrofa OX=9823 GN=SPRING1 PE=3 SV=1 CANONICAL=A0A480VC18-1" }, "isoforms": [ { "isoform_ac": "A0A286ZVX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480VC18/entry#A0A286ZVX5-1", "sequence": { "sequence": "MPPGPRACPAPRRDGQPGGHGVAPPPEEEEERAVRDRNLLQVQDHDQPIPWKVQFNLGNSSRPSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPGTKQYCCDGCLSNGCCSAYEYCVSCCLQPSKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQVRTSRRKLENVHWGGLWWGDDEELYEALWTFGEMIVHPLVSEGDWFQDPISLEVQVPSIKWHNVCI", "length": 236, "header": "tr|A0A286ZVX5-1|A0A480VC18_PIG Computationally mapped isoform of SREBP regulating gene protein OS=Sus scrofa OX=9823 GN=SPRING1 PE=3 SV=2 CANONICAL=A0A480VC18-1" }, "locus": { "chromosome": "14", "start_pos": 35719134, "end_pos": 35706024, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049639.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049639.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035648.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035648.2" } ] } }, { "isoform_ac": "A0A480VC18-1", "url": "https://www.uniprot.org/uniprotkb/A0A480VC18/entry#A0A480VC18-1", "sequence": { "sequence": "MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLTSTFKQEERAVRDRNLLQVQDHDQPIPWKVQFNLGNSSRPSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPGTKQYCCDGCLSNGCCSAYEYCVSCCLQPSKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYCYGESPPELFPA", "length": 205, "header": "tr|A0A480VC18-1|A0A480VC18_PIG Isoform 1 of SREBP regulating gene protein OS=Sus scrofa OX=9823 GN=SPRING1 PE=3 SV=1 CANONICAL=A0A480VC18-1" }, "locus": { "chromosome": "14", "start_pos": 35721331, "end_pos": 35706064, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067844.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067844.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072054.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072054.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZVX5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVX5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520051", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520051", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7FW99-1", "protein_name": "SREBP regulating gene protein", "gene_name": "Spring1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLNLAALLWRRLLRKRWVLALVFGLSLVYFLSSTFKQEERAVRDRNLLQIQDREQPIPWKVQFNLGNSSRPSNQCRNSVQGKHLITDELGEASPGSQDVHLWLSGYVCERKDLLANGCCDVTVPSTKQYCCDGCLANGCCEAYEHCVSCCLQPSKQLLLERFLNRAAMAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYCYGESPPELFPA", "length": 220 }, "evidence": [ { "id": "A0A480VC18", "url": "https://omabrowser.org/oma/group/A0A480VC18/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZTN6-1", "protein_name": "SREBP regulating gene protein", "gene_name": "Spring1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLNLAALLWRRLLRKRWVLALVFGLSLVYFLSSTFKQEERAIRDRNLLQVQDREQPIPWKVQFNLGNSSRPSNQCRNSVQGKHLITDELGYVCERKDLLANGCCDVSVPSTKQYCCNGCLANGCCEAYEYCVSCCLQPSKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYCYGESPPELFPA", "length": 205 }, "evidence": [ { "id": "A0A480VC18", "url": "https://omabrowser.org/oma/group/A0A480VC18/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q17QN8-1", "protein_name": "SREBP regulating gene protein", "gene_name": "SPRING", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLTSTFKQEERAVRDRNLLQVQDHDQPIPWKVQFNLGNSSRPSNQCRNSIQGKHLITDELGYVCERRDLLVNGCCNVNVPGTKQYCCDGCLSSGCCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYCYGESPPELFPA", "length": 205 }, "evidence": 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"name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A480VC18", "url": "https://www.uniprot.org/uniprotkb/A0A480VC18" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of SREBP signaling pathway", "id": "GO:2000640", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000640", "evidence": [ { "database": "UniProtKB", "id": "A0A480VC18", "url": "https://www.uniprot.org/uniprotkb/A0A480VC18" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], 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"Protein Classification" ] }, { "id": "100522530", "url": "https://www.ncbi.nlm.nih.gov/gene/100522530", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035771", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035771", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050384", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050384", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PNSCHRS", "url": "https://omabrowser.org/oma/group/PNSCHRS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14167", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14167", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14167:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14167:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14604", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14604", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-182971", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-182971", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6807004", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807004", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8856825", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856825", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8856828", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856828", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8866376", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866376", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020935916", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935916", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A000", "url": "https://www.uniprot.org/uniprotkb/A0A287A000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A000-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A000-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APR6", "url": "https://www.uniprot.org/uniprotkb/A0A287APR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480QB06", "url": "https://www.uniprot.org/uniprotkb/A0A480QB06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480QB06-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QB06-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481CIL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQN7", "url": "https://www.uniprot.org/uniprotkb/F1SQN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQN7-1", "url": "https://www.uniprot.org/uniprotkb/F1SQN7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GK80", "url": "https://www.uniprot.org/uniprotkb/K7GK80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GK80-1", "url": "https://www.uniprot.org/uniprotkb/K7GK80-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GMW4", "url": "https://www.uniprot.org/uniprotkb/K7GMW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GMW4-1", "url": "https://www.uniprot.org/uniprotkb/K7GMW4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GNB1", "url": "https://www.uniprot.org/uniprotkb/K7GNB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GNB1-1", "url": "https://www.uniprot.org/uniprotkb/K7GNB1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIKKEMKKDPLSSKAPEKPMHEASSGNALLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDDLGISQDEQLSKSSLRETTGSESDGGDSSSTKSEGANGTVATAAIQPKKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPPTAATPDSSKTEMDSRTKTKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKEGNRPKKPPPPTAPVIKQGAGTTERKHEIKKIPPERPETLPNRTEEKDRPEREPKLDLQKPSVPAIPPKKPRPPKTNSLSRPGALPPRRPERPVGPLTHARGDGPKIDLVGSSISGILDKDLSDRSNDIDLEGFDSVVSSTEKLSHPTTSRPKATGRRPPSQSLTSSSLSSPDIFDSPSPEEDKEEHVSLAHRGVDASKKTSKTVTISQVSDNKASLPPKPGTMAAGSGGPASLSSAASSPLSSSLGTVGHRANSPSLFGVEGKPKMEPAASSQAALEELRTQVRELRSLIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKVLQSK", "length": 665, "header": "tr|A0A481CIL9-1|A0A481CIL9_PIG Isoform 1 of SH3 domain-containing kinase-binding protein 1 OS=Sus scrofa OX=9823 GN=SH3KBP1 PE=1 SV=1 CANONICAL=A0A481CIL9-1" }, "isoforms": [ { "isoform_ac": "A0A287A000-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9/entry#A0A287A000-1", "sequence": { "sequence": "VEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIKKEMKKDPLSSKAPEKPMHEASSGNALLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDDLGISQDEQLSKSRPEALLPPASLLPFPAHGAKGKTTFEGTILYRAAPGKTEGHRRYYRTRLWAEPGEKRIWGGLRETTGSESDGGDSSSTKSEGANGTVATAAIQPKKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPPTAATPDSSKTEMDSRTKTKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKEGNRPKKPPPPTAPVIKQGAGTTERKHEIKKIPPERPETLPNRTEEKDRPEREPKLDLQKPSVPAIPPKKPRPPKTNSLSRPGALPPRRPERPVGPLTHARGDGPKIDLVGSSISGILDKDLSDRSNDIDLEGFDSVVSSTEKLSHPTTSRPKATGRRPPSQSLTSSSLSSPDIFDSPSPEEDKEEHVSLAHRGVDASKKTSKTVTISQVSDNKASLPPKPGTMAAGSGGPASLSSAASSPLSSSLGTVGHRANSPSLFGVEGKPKMEPAASSQAALEELRTQVRELRSLIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKVLQSK", "length": 724, "header": "tr|A0A287A000-1|A0A481CIL9_PIG Computationally mapped isoform of SH3 domain-containing kinase-binding protein 1 OS=Sus scrofa OX=9823 GN=SH3KBP1 PE=1 SV=3 CANONICAL=A0A481CIL9-1" }, "locus": { "chromosome": "X", "start_pos": 16178837, "end_pos": 15888165, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062905.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062905.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037278.3", "url": "https://www.ensembl.org/id/ENSSSCP00000037278.3" } ] } }, { "isoform_ac": "A0A287APR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9/entry#A0A287APR6-1", "sequence": { "sequence": "VEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIKKEMKKDPLSSKAPEKPMHEASSGNALLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDDLGISQDEQLSKSRPEALLPPASLLPFPAHGAKGKTTFEGTILYRAAPGKTEGHRRYYSLRETTGSESDGGDSSSTKSEGANGTVATAAIQPKKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPPTAATPDSSKTEMDSRTKTKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKEGNRPKKPPPPTAPVIKQGAGTTERKHEIKKIPPERPETLPNRTEEKDRPEREPKLDLQKPSVPAIPPKKPRPPKTNSLSRPGALPPRRPERPVGPLTHARGDGPKIDLVGSSISGILDKDLSDRSNDIDEGLANGTGRCSTQIPGLSPLCPPLSQVSDNKASLPPKPGTMAAGSGGPASLSSAASSPLSSSLGTVGHRANSPSLFGVEGKPKMEPAASSQAALEELRTQVRELRSLIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKVLQSK", "length": 656, "header": "tr|A0A287APR6-1|A0A481CIL9_PIG Computationally mapped isoform of SH3 domain-containing kinase-binding protein 1 OS=Sus scrofa OX=9823 GN=SH3KBP1 PE=1 SV=3 CANONICAL=A0A481CIL9-1" }, "locus": { "chromosome": "X", "start_pos": 16178837, "end_pos": 15888165, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056772.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056772.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045887.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045887.3" } ] } }, { "isoform_ac": "A0A480QB06-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9/entry#A0A480QB06-1", "sequence": { "sequence": "MELSAAKAPSAADTSEIEIKKEMKKDPLSSKAPEKPMHEASSGNALLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDDLGISQDEQLSKSSLRETTGSESDGGDSSSTKSEGANGTVATAAIQPKKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPPTAATPDSSKTEMDSRTKTKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKEGNRPKKPPPPTAPVIKQGAGTTERKHEIKKIPPERPETLPNRTEEKDRPEREPKLDLQKPSVPAIPPKKPRPPKTNSLSRPGALPPRRPERPVGPLTHARGDGPKIDLVGSSISGILDKDLSDRSNDIDLEGFDSVVSSTEKLSHPTTSRPKATGRRPPSQSLTSSSLSSPDIFDSPSPEEDKEEHVSLAHRGVDASKKTSKTVTISQVSDNKASLPPKPGTMAAGSGGPASLSSAASSPLSSSLGTVGHRANSPSLFGVEGKPKMEPAASSQAALEELRTQVRELRSLIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKVLQSK", "length": 628, "header": "tr|A0A480QB06-1|A0A480QB06_PIG Computationally mapped isoform of SH3 domain containing kinase binding protein 1 OS=Sus scrofa OX=9823 GN=SH3KBP1 PE=1 SV=1 CANONICAL=A0A481CIL9-1" }, "locus": { "chromosome": "X", "start_pos": 16145295, "end_pos": 15888165, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064660.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064660.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051789.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051789.2" } ] } }, { "isoform_ac": "A0A481CIL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9/entry#A0A481CIL9-1", "sequence": { "sequence": "MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIKKEMKKDPLSSKAPEKPMHEASSGNALLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDDLGISQDEQLSKSSLRETTGSESDGGDSSSTKSEGANGTVATAAIQPKKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPPTAATPDSSKTEMDSRTKTKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKEGNRPKKPPPPTAPVIKQGAGTTERKHEIKKIPPERPETLPNRTEEKDRPEREPKLDLQKPSVPAIPPKKPRPPKTNSLSRPGALPPRRPERPVGPLTHARGDGPKIDLVGSSISGILDKDLSDRSNDIDLEGFDSVVSSTEKLSHPTTSRPKATGRRPPSQSLTSSSLSSPDIFDSPSPEEDKEEHVSLAHRGVDASKKTSKTVTISQVSDNKASLPPKPGTMAAGSGGPASLSSAASSPLSSSLGTVGHRANSPSLFGVEGKPKMEPAASSQAALEELRTQVRELRSLIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKVLQSK", "length": 665, "header": "tr|A0A481CIL9-1|A0A481CIL9_PIG Isoform 1 of SH3 domain-containing kinase-binding protein 1 OS=Sus scrofa OX=9823 GN=SH3KBP1 PE=1 SV=1 CANONICAL=A0A481CIL9-1" }, "locus": { "chromosome": "X", "start_pos": 16223811, "end_pos": 15888165, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078861.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078861.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062992.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062992.1" } ] } }, { "isoform_ac": "F1SQN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9/entry#F1SQN7-1", "sequence": { "sequence": "MEAGGRDRSTAGEEIKKEMKKDPLSSKAPEKPMHEASSGNALLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDDLGISQDEQLSKSRKTTFEGTILYRAAPGKTEGHRRYYSLRETTGSESDGGDSSSTKSEGANGTVATAAIQPKKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPPTAATPDSSKTEMDSRTKTKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKEGNRPKKPPPPTAPVIKQGAGTTERKHEIKKIPPERPETLPNRTEEKDRPEREPKLDLQKPSVPAIPPKKPRPPKTNSLSRPGALPPRRPERPVGPLTHARGDGPKIDLVGSSISGILDKDLSDRSNDIDLEGFDSVVSSTEKLSHPTTSRPKATGRRPPSQSLTSSSLSSPDIFDSPSPEEDKEEHVSLAHRGVDASKKTSKTVTISQVSDNKASLPPKPGTMAAGSGGPASLSSAASSPLSSSLGTVGHRANSPSLFGVEGKPKMEPAASSQAALEELRTQVRELRSLIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKVLQSK", "length": 649, "header": "tr|F1SQN7-1|A0A481CIL9_PIG Computationally mapped isoform of SH3 domain-containing kinase-binding protein 1 OS=Sus scrofa OX=9823 GN=SH3KBP1 PE=1 SV=6 CANONICAL=A0A481CIL9-1" }, "locus": { "chromosome": "X", "start_pos": 16178743, "end_pos": 15888165, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013301.6", "url": "https://www.ensembl.org/id/ENSSSCT00000013301.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012945.6", "url": "https://www.ensembl.org/id/ENSSSCP00000012945.6" } ] } }, { "isoform_ac": "K7GK80-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9/entry#K7GK80-1", "sequence": { "sequence": "MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIKKEMKKDPLSSKAPEKPMHEASSGNALLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDDLGISQDEQLSKSRPEALLPPASLLPFPAHGAKGKTTFEGTILYRAAPGKTEGHRRYYSLRETTGSESDGGDSSSTKSEGANGTVATAAIQPKKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPPTAATPDSSKTEMDSRTKTKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKEGNRPKKPPPPTAPVIKQGAGTTERKHEIKKIPPERPETLPNRTEEKDRPEREPKLDLQKPSVPAIPPKKPRPPKTNSLSRPGALPPRRPERPVGPLTHARGDGPKIDLVGSSISGILDKDLSDRSNDIDLEGFDSVVSSTEKLSHPTTSRPKATGRRPPSQSLTSVSDNKASLPPKPGTMAAGSGGPASLSSAASSPLSSSLGTVGHRANSPSLFGVEGKPKMEPAASSQAALEELRTQVRELRSLIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKVLQSK", "length": 667, "header": "tr|K7GK80-1|A0A481CIL9_PIG Computationally mapped isoform of SH3 domain-containing kinase-binding protein 1 OS=Sus scrofa OX=9823 GN=SH3KBP1 PE=1 SV=4 CANONICAL=A0A481CIL9-1" }, "locus": { "chromosome": "X", "start_pos": 16223811, "end_pos": 15888165, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035066.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035066.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028253.4", "url": "https://www.ensembl.org/id/ENSSSCP00000028253.4" } ] } }, { "isoform_ac": "K7GMW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9/entry#K7GMW4-1", "sequence": { "sequence": "MELSAAKAPSAADTSEIEIKKEMKKDPLSSKAPEKPMHEASSGNALLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDDLGISQDEQLSKSRPEALLPPASLLPFPAHGAKGLRETTGSESDGGDSSSTKSEGANGTVATAAIQPKKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPPTAATPDSSKTEMDSRTKTKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKEGNRPKKPPPPTAPVIKQGAGTTERKHEIKKIPPERPETLPNRTEEKDRPEREPKLDLQKPSVPAIPPKKPRPPKTNSLSRPGALPPRRPERPVGPLTHARGDGPKIDLVGSSISGILDKDLSDRSNDIDLEGFDSVVSSTEKLSHPTTSRPKATGRRPPSQSLTSSSLSSPDIFDSPSPEEDKEEHVSLAHRGVDASKKTSKTVTISQVSDNKASLPPKPGTMAAGSGGPASLSSAASSPLSSSLGTVGHRANSPSLFGVEGKPKMEPAASSQAALEELRTQVRELRSLIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKVLQSK", "length": 648, "header": "tr|K7GMW4-1|A0A481CIL9_PIG Computationally mapped isoform of SH3 domain-containing kinase-binding protein 1 OS=Sus scrofa OX=9823 GN=SH3KBP1 PE=1 SV=4 CANONICAL=A0A481CIL9-1" }, "locus": { "chromosome": "X", "start_pos": 16145295, "end_pos": 15888165, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036429.4", "url": "https://www.ensembl.org/id/ENSSSCT00000036429.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029213.4", "url": "https://www.ensembl.org/id/ENSSSCP00000029213.4" } ] } }, { "isoform_ac": "K7GNB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9/entry#K7GNB1-1", "sequence": { "sequence": "VEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIKKEMKKDPLSSKAPEKPMHEASSGNALLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDDLGISQDEQLSKSSLRETTGSESDGGDSSSTKSEGANGTVATAAIQPKKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPPTAATPDSSKTEMDSRTKTKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKEGNELVNAGKLNRENVDLLLNLESQRPKKPPPPTAPVIKQGAGTTERKHEIKKIPPERPETLPNRTEEKDRPEREPKLDLQKPSVPAIPPKKPRPPKTNSLSRPGALPPRRPERPVGPLTHARGDGPKIDLVGSSISGILDKDLSDRSNDIDLEGFDSVVSSTEKLSHPTTSRPKATGRRPPSQSLTSSSLSSPDIFDSPSPEEDKEEHVSLAHRGVDASKKTSKTVTISQVSDNKASLPPKPGTMAAGSGGPASLSSAASSPLSSSLGTVGHRANSPSLFGVEGKPKMEPAASSQAALEELRTQVRELRSLIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKVLQSK", "length": 686, "header": "tr|K7GNB1-1|A0A481CIL9_PIG Computationally mapped isoform of SH3 domain-containing kinase-binding protein 1 OS=Sus scrofa OX=9823 GN=SH3KBP1 PE=1 SV=4 CANONICAL=A0A481CIL9-1" }, "locus": { "chromosome": "X", "start_pos": 16178837, "end_pos": 15888165, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036455.4", "url": "https://www.ensembl.org/id/ENSSSCT00000036455.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029363.4", "url": "https://www.ensembl.org/id/ENSSSCP00000029363.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 254, "start_aa": "Thr", "end_pos": 254, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr254", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 344, "start_aa": "Thr", "end_pos": 344, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr344", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQN7", "url": "https://www.uniprot.org/uniprotkb/F1SQN7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-182971", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-182971", "resource": "Reactome", "description": "EGFR downregulation" }, { "id": "R-SSC-6807004", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807004", "resource": "Reactome", "description": "Negative regulation of MET activity" }, { "id": "R-SSC-8856825", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856825", "resource": "Reactome", "description": "Cargo recognition for clathrin-mediated endocytosis" }, { "id": "R-SSC-8856828", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856828", "resource": "Reactome", "description": "Clathrin-mediated endocytosis" }, { "id": "R-SSC-8866376", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866376", "resource": "Reactome", "description": "Reelin signalling pathway" }, { "id": "R-SSC-983695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983695", "resource": "Reactome", "description": "Antigen activates B Cell Receptor (BCR) leading to generation of second messengers" } ], "orthologs": [ { "uniprot_canonical_ac": "Q8R550-1", "protein_name": "SH3 domain-containing kinase-binding protein 1", "gene_name": "Sh3kbp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVEAIVEFDYQAQHDDELTISVGEVITNIRKEDGGWWEGQINGRRGLFPDNFVREIKKDMKKDLLSNKAPEKPMHDVSSGNALLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQDEQLSKSRPEGFLPASLLPFPAHGAKGKTTFEGTILYRAAPGKTEGHRRYYSLRETTGSESDGGDSSSTKSEGANGTMATAAIQPKKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPPATSTPDPSKTEMDSRTKTKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPSDFDKEGNRPKKPPPPSAPVVKQGAGTTERKHEIKKIPPERPETLPNRTEEKERPEREPKLDLQKPSVPAIPPKKPRPPKTNSLNRPGALPPRRPERPVGPLTHTRGDSPKIDLAGSALSGILDKDLSDRSNDIDLEGFDSVISSTEKLSHPTTSRPKATGRRPPSQSLTSSSLSSPDIFDSPSPEEDKEEHISLAHRGIDVSKKTSKTVTISQVSDNKTSLPPKPGTMAAASSGPASLSSVASSPMSSSLGTAGQRASSPSLFSTEGKPKMEPAVSSQAAIEELKMQVRELRTIIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKALQSK", "length": 709 }, "evidence": [ { "id": "A0A481CIL9", "url": "https://omabrowser.org/oma/group/A0A481CIL9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925Q9-1", "protein_name": "SH3 domain-containing kinase-binding protein 1", "gene_name": "Sh3kbp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVEAIVEFDYQAQHDDELTISVGEVITNIRKEDGGWWEGQINGRRGLFPDNFVREIKKDVKKDLLSNKAPEKPMHDVSSGNSLLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQDEQLSKSRPEGFLPASLLPFPAHGAKGKTTFEGTILYRAAPGKTEGHRRYYSLRETTGSESDGGDSSSTKSEGANGTVATAAIQPKKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPPATSTPDPSKTEMDSRTKTKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPSDFDKEGNRPKKPPPPSAPVIKQGAGTTERKHEIKKIPPERPETLPNRTEEKERPEREPKLDLQKPSVPAIPPKKPRPPKTNSLNRPGVLPPRRPERPVGPLTHTRGDSSKIDLAGSTLSGILDKDLSDRSNDIDLEGFDSVISSTEKLSHPTTSRPKATGRRPPSQSLTSSSLSSPDIFDSPSPEEDKEEHISLAHRGIDVSKKTSRTVTISQVSDNKASLPPKPGTMAAASSGPASLSSVASSPMSSSLGTAGQRASSPSLFSAEGKAKTESAVSSQAAIEELKMQVRELRTIIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKALQSK", "length": 709 }, "evidence": [ { "id": "A0A481CIL9", "url": "https://omabrowser.org/oma/group/A0A481CIL9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96B97-1", "protein_name": "SH3 domain-containing kinase-binding protein 1", "gene_name": "SH3KBP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIKKEMKKDPLTNKAPEKPLHEVPSGNSLLSSETILRTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQDEQLSKSSLRETTGSESDGGDSSSTKSEGANGTVATAAIQPKKVKGVGFGDIFKDKPIKLRPRSIEVENDFLPVEKTIGKKLPATTATPDSSKTEMDSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKEGNRPKKPPPPSAPVIKQGAGTTERKHEIKKIPPERPEMLPNRTEEKERPEREPKLDLQKPSVPAIPPKKPRPPKTNSLSRPGALPPRRPERPVGPLTHTRGDSPKIDLAGSSLSGILDKDLSDRSNDIDLEGFDSVVSSTEKLSHPTTSRPKATGRRPPSQSLTSSSLSSPDIFDSPSPEEDKEEHISLAHRGVDASKKTSKTVTISQVSDNKASLPPKPGTMAAGGGGPAPLSSAAPSPLSSSLGTAGHRANSPSLFGTEGKPKMEPAASSQAAVEELRTQVRELRSIIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKALQSK", "length": 665 }, "evidence": [ { "id": "A0A481CIL9", "url": "https://omabrowser.org/oma/group/A0A481CIL9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 8, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" }, { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" }, { "name": "cytoplasmic vesicle membrane", "id": "GO:0030659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030659", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" }, { "name": "neuron projection", "id": "GO:0043005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043005", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" }, { "name": "endocytic vesicle", "id": "GO:0030139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030139", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" }, { "name": "positive regulation of B cell activation", "id": "GO:0050871", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050871", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" }, { "name": "actin filament organization", "id": "GO:0007015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007015", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" }, { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "SH3 domain binding", "id": "GO:0017124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017124", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" }, { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "A0A481CIL9", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 197, "end_pos": 199, "annotation": "n_glycosylation_sequon" }, { "start_pos": 374, "end_pos": 376, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A481CIL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481CIL9" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 58, "start_aa": "Met", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 254, 344 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 197, "end_pos": 199 }, { "start_pos": 374, "end_pos": 376 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480E6T4-1", "uniprot_ac": "A0A480E6T4", "uniprot_id": "A0A480E6T4_PIG", "mass": { "chemical_mass": 56473.0, "monoisotopic_mass": 56473.0 }, "refseq": { "ac": "XP_005663834", "name": "protein FAM83F", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663834" }, "gene_names": [ { "name": "FAM83F", "type": "recommended", "evidence": [ { "id": "A0A480E6T4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480E6T4" } ] }, { "name": "GRAP2", "type": "recommended", "evidence": [ { "id": "A0A480E6T4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480E6T4" } ] }, { "name": "FAM83F", "type": "synonym", "evidence": [ { "id": "XP_005663834", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663834" }, { "id": "A0A480E6T4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480E6T4" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 83 member F", "type": "synonym", "evidence": [ { "id": "A0A480E6T4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480E6T4/entry#names_and_taxonomy" } ] }, { "name": "protein FAM83F", "type": "synonym", "evidence": [ { "id": "XP_005663834", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663834" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480E6T4", "url": "https://www.uniprot.org/uniprotkb/A0A480E6T4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM83F", "url": "https://www.uniprot.org/uniprotkb/A0A480E6T4", "locus": { "chromosome": "5", "start_pos": 8319203, "end_pos": 8354723, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000079", "url": "https://www.ensembl.org/id/ENSSSCG00000000079" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000079", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000079", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000000080", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000080", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155438", "url": "https://www.ncbi.nlm.nih.gov/gene/100155438", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050944", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050944", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155438", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155438", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HVEMFDI", "url": "https://omabrowser.org/oma/group/HVEMFDI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480E6T4", "url": "https://www.orthodb.org/?gene=A0A480E6T4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16181", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16181", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16181:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16181:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07894", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07894", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005663834", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663834", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A3I6", "url": "https://www.uniprot.org/uniprotkb/A0A287A3I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A3I6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3I6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480E6T4", "url": "https://www.uniprot.org/uniprotkb/A0A480E6T4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480E6T4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480E6T4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRA2", "url": "https://www.uniprot.org/uniprotkb/F1SRA2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRA2-1", "url": "https://www.uniprot.org/uniprotkb/F1SRA2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAESQLSCLDEAHVNERVTEAQAAFYYCERRRAALEALLGGGEQAYRERVKEERLRDFLSSQERQDLRAAWSPYEDVAAAAATAARGKSKTKAKAPAPAPAQARAEPGESLAYWPDRSDTEVPPLDLGWTDESFYRGVSRITLFTHPPKEEKAPHLKQLVRQLIQQAQKVIAVVMDLFTDGEIFQDIVDAASKRRVPVYIILDEAGVKYFLEMCQGLELADFRIRNIRVRSVTGVGFYMPMGRIKGTLSSKFLMVDGDKVATGSYSFTWSSSHVNRNLLLLLTGQNVEPFDVEFRELYAISEEVNLYQKLGLAGGAGRLGLNYSSTVARKLINPKYALVAASRQPPGEMMRSAARQQREVCSHPEGQEEGGRGSESARRLENFLHDLVTLQQVLPPVEPVPSGELTRKDSRGVCHLRADPKPKAPEALARHGKGEAANGEATPAKEGRRFSSRFFSRRSKKTAAPNGTASALPAETFAEVDFQVGKRPNEGSSADVSGKTTPSPAKASNCVIF", "length": 513, "header": "tr|A0A480E6T4-1|A0A480E6T4_PIG Isoform 1 of Family with sequence similarity 83 member F OS=Sus scrofa OX=9823 GN=FAM83F PE=3 SV=1 CANONICAL=A0A480E6T4-1" }, "isoforms": [ { "isoform_ac": "A0A287A3I6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480E6T4/entry#A0A287A3I6-1", "sequence": { "sequence": "MKVIAVVMDLFTDGEIFQDIVDAASKRRVPVYIILDEAGVKYFLEMCQGLELADFRIRNIRVRSVTGVGFYMPMGRIKGTLSSKFLMVDGDKVATGSYSFTWSSSHVNRNLLLLLTGQNVEPFDVEFRELYAISEEVNLYQKLGLAGGAGRLGLNYSSTVARKLINPKYALVAASRQPPGEMMRSAARQQREVCSHPEGQEEGGRGSESARRLENFLHDLVTLQQVLPPVEPVPSGELTRKDSRGVCHLRADPKPKAPEALARHGKGEAANGEATPAKEGRRFSSRFFSRRSKKTAAPNGTASALPAETFAEVDFQVGKRPNEGSSADVSGKTTPSPAKASNCVIF", "length": 346, "header": "tr|A0A287A3I6-1|A0A480E6T4_PIG Computationally mapped isoform of Family with sequence similarity 83 member F OS=Sus scrofa OX=9823 GN=FAM83F PE=3 SV=2 CANONICAL=A0A480E6T4-1" }, "locus": { "chromosome": "5", "start_pos": 8353637, "end_pos": 8325412, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045170.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045170.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038513.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038513.2" } ] } }, { "isoform_ac": "A0A480E6T4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480E6T4/entry#A0A480E6T4-1", "sequence": { "sequence": "MAESQLSCLDEAHVNERVTEAQAAFYYCERRRAALEALLGGGEQAYRERVKEERLRDFLSSQERQDLRAAWSPYEDVAAAAATAARGKSKTKAKAPAPAPAQARAEPGESLAYWPDRSDTEVPPLDLGWTDESFYRGVSRITLFTHPPKEEKAPHLKQLVRQLIQQAQKVIAVVMDLFTDGEIFQDIVDAASKRRVPVYIILDEAGVKYFLEMCQGLELADFRIRNIRVRSVTGVGFYMPMGRIKGTLSSKFLMVDGDKVATGSYSFTWSSSHVNRNLLLLLTGQNVEPFDVEFRELYAISEEVNLYQKLGLAGGAGRLGLNYSSTVARKLINPKYALVAASRQPPGEMMRSAARQQREVCSHPEGQEEGGRGSESARRLENFLHDLVTLQQVLPPVEPVPSGELTRKDSRGVCHLRADPKPKAPEALARHGKGEAANGEATPAKEGRRFSSRFFSRRSKKTAAPNGTASALPAETFAEVDFQVGKRPNEGSSADVSGKTTPSPAKASNCVIF", "length": 513, "header": "tr|A0A480E6T4-1|A0A480E6T4_PIG Isoform 1 of Family with sequence similarity 83 member F OS=Sus scrofa OX=9823 GN=FAM83F PE=3 SV=1 CANONICAL=A0A480E6T4-1" }, "locus": { "chromosome": "5", "start_pos": 8354674, "end_pos": 8325412, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088024.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088024.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064105.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064105.1" } ] } }, { "isoform_ac": "F1SRA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480E6T4/entry#F1SRA2-1", "sequence": { "sequence": "MAESQLSCLDEAHVNERVTEAQAAFYYCERRRAALEALLGGGEQATAARGKSKTKAKAPAPAPAQARAEPGESLAYWPDRSDTEVPPLDLGWTDESFYRGVSRITLFTHPPKEEKAPHLKQLVRQLIQQAQKVIAVVMDLFTDGEIFQDIVDAASKRRVPVYIILDEAGVKYFLEMCQGLELADFRIRNIRVRSVTGVGFYMPMGRIKGTLSSKFLMVDGDKVATGSYSFTWSSSHVNRNLLLLLTGQNVEPFDVEFRELYAISEEVNLYQKLGLAGGAGRLGLNYSSTVARKLINPKYALVAASRQPPGEMMRSAARQQREVCSHPEGQEEGGRGSESARRLENFLHDLVTLQQVLPPVEPVPSGELTRKDSRGVCHLRADPKPKAPEALARHGKGEAANGEATPAKEGRRFSSRFFSRRSKKTAAPNGTASALPAETFAEVDFQVGKRPNEGSSADVSGKTTPSPAKASNCVIF", "length": 476, "header": "tr|F1SRA2-1|A0A480E6T4_PIG Computationally mapped isoform of Family with sequence similarity 83 member F OS=Sus scrofa OX=9823 GN=FAM83F PE=3 SV=2 CANONICAL=A0A480E6T4-1" }, "locus": { "chromosome": "5", "start_pos": 8354674, "end_pos": 8325412, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000085.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000085.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000084.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000084.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 442, "start_aa": "Thr", "end_pos": 442, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr442", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRA2", "url": "https://www.uniprot.org/uniprotkb/F1SRA2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155438", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155438", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZAT7-1", "protein_name": "Family with sequence similarity 83, member F", "gene_name": "Fam83f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAESQLNCLDEAHVNERVTEAHAAFYYCERRRAALEALLGGSEQAYRERVKKERLRDFLSSQERQALCAAWSPYEEAVSNTRAKAKAKAKSHSRAEPGESLAYWPDRSDTEVPPLDLGWTDSSFYRGVSRVTLFTHPPKEEKAPHLKQVVRQMIQQAQKVIAVVMDLFTDGDIFQDIVDAASKRRVPVYIILDEGGVKFFLEMCQGLELADFRIRNIRVRSVTGVGFYMPMGKIKGTLSSKFLMVDGDKVATGSYSFTWSSSYVDRNLLLLLTGQNVEPFDIEFRELYAISEEVNLHQHLGLAGRIGLNYSSTVARKLINPKYALVAGTRPPPGEMMRWAARQQRDAGGNPEGQEEGSGGGESARRLESFLNDLVTVEQVLPTVDPIIPRLPKPNDGKTTSYAHTDLRHKSREALPQNGKGEAANGEATPAKESRRFSSRFFSRRVKRPTVHSSMAGSPSTETFTDVEFQLGKRHNEGSMANISGRGSSSVTKASNCVIS", "length": 500 }, "evidence": [ { "id": "A0A480E6T4", "url": "https://omabrowser.org/oma/group/A0A480E6T4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BM16-1", "protein_name": "Family with sequence similarity 83 member F", "gene_name": "FAM83F", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAESQLSCLDETHVNERVTEAQAAFYYCERRRAALEALLGGGEQAYRERVKKEQLRDFLSSQERQALRAAWSPYEDVAAAAAAAARGKSKAKAKTPAQASAEPGESLAYWPDRSDTEVPPLDLGWTDAGFYRGVSRVTLFTHPPKDEKAPHLKQLVRQMIQQAQKVVAVVMDLFTDGEIFQDIVDAASKRRVPVYIILDEAGVNYFLEMCQGLELPDFRIRNIRVRSVTGVGFYMPMGKVKGTLSSKFLMVDGDKVATGSFSFTWSSSHVDRNLLLLLTGQHVEPFDVEFRELYAISEEVNLYQQLGLAGGAGRPGLHYSSTVARKLINPKYALVAGSRPPPGEMMRWAARQQQEASGRAEGQEEGGKGESARRLESFLHDLATLEQVLPPVEPVPLGELSRRDARGVSHLHTDLKSRPREALARNGKGEAANGEATLAKEGRRFGSRIFSRRSKRPAAPNGTASALSPKALAEAEFMTGKRPNEGSSADVSGKGSPSPGKNSNCMIS", "length": 508 }, "evidence": [ { "id": "A0A480E6T4", "url": "https://omabrowser.org/oma/group/A0A480E6T4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3UKU4-1", "protein_name": "Protein FAM83F", "gene_name": "Fam83f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAESQLSCLDEAHVNERVTEAHAAFYYCERRRAALEALLGGGEQAYRELVKKERLRDFLSSQERQALCAAWSPYEEAVSSTRAKAKAKAKFPAQPTESLAYWPDRSDTEVPPLDLGWTDTNFYRGVSRVTLFTHPPKEEKAPHLKQVVRQMIQQAQKVIAVVMDLFTDGDIFQDIVDAACKRRVPVYIILDEGGVKYFLEMCQGLELADFRIRNIRVRSVTGIGFYMPMGKIKGTLSSKFLMVDGDKVATGSFSFTWSSSYVDRNLLLLLTGQNMEPFDIEFRELYAISEEVNLHQHLGLAGRIGLNYSSTVARKLINPKYALVAGTRRPPGEMMRWAARQQREAGGNVEGQEEGSGGGESARRLESFLNDLVTVEQILPTVEPISPRLQRPTNGRPVSHAHTDAKHRSREALPQNGKGEAANGEATPAKEGKRFSSRLFSRRVKRPAVPSSMASSPSTETFADVEFPLGKRHNEGSNANISGKGITKASNCVIS", "length": 495 }, "evidence": [ { "id": "A0A480E6T4", "url": "https://omabrowser.org/oma/group/A0A480E6T4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NEG4-1", "protein_name": "Protein FAM83F", "gene_name": "FAM83F", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAESQLNCLDEAHVNEKVTEAQAAFYYCERRRAALEALLGGGEQAYRERLKEEQLRDFLSSPERQALRAAWSPYEDAVPAANARGKSKAKAKAPAPAPAESGESLAYWPDRSDTEVPPLDLGWTDTGFYRGVSRVTLFTHPPKDEKAPHLKQVVRQMIQQAQKVIAVVMDLFTDGDIFQDIVDAACKRRVPVYIILDEAGVKYFLEMCQDLQLTDFRIRNIRVRSVTGVGFYMPMGRIKGTLSSRFLMVDGDKVATGSYRFTWSSSHVDRNLLLLLTGQNVEPFDTEFRELYAISEEVDLYRQLSLAGRVGLHYSSTVARKLINPKYALVSGCRHPPGEMMRWAARQQREAGGNPEGQEEGASGGESAWRLESFLKDLVTVEQVLPPVEPIPLGELSQKDGRMVSHMHRDLKPKSREAPSRNGMGEAARGEAAPARRFSSRLFSRRAKRPAAPNGMASSVSTETSEVEFLTGKRPNENSSADISGKTSPSSAKPSNCVIS", "length": 500 }, "evidence": [ { "id": "A0A480E6T4", "url": "https://omabrowser.org/oma/group/A0A480E6T4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A480E6T4", "url": "https://www.uniprot.org/uniprotkb/A0A480E6T4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "A0A480E6T4", "url": "https://www.uniprot.org/uniprotkb/A0A480E6T4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 322, "end_pos": 324, "annotation": "n_glycosylation_sequon" }, { "start_pos": 466, "end_pos": 468, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480E6T4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480E6T4" }, { "id": "PF07894", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07894" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Scaffolding anchor of CK1", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 302, "start_aa": "Asn", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 442 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 322, "end_pos": 324 }, { "start_pos": 466, "end_pos": 468 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480REB3-1", "uniprot_ac": "A0A480REB3", "uniprot_id": "A0A480REB3_PIG", "mass": { "chemical_mass": 61030.0, "monoisotopic_mass": 61030.0 }, "refseq": { "ac": "XP_020943317", "name": "EH domain-containing protein 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943317" }, "gene_names": [ { "name": "EHD3", "type": "recommended", "evidence": [ { "id": "A0A480REB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480REB3" } ] }, { "name": "EHD3", "type": "synonym", "evidence": [ { "id": "XP_020943317", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943317" } ] } ], "protein_names": [ { "name": "EH domain containing 3", "type": "synonym", "evidence": [ { "id": "A0A480REB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480REB3/entry#names_and_taxonomy" } ] }, { "name": "EH domain-containing protein 3", "type": "synonym", "evidence": [ { "id": "XP_020943317", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943317" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480REB3", "url": "https://www.uniprot.org/uniprotkb/A0A480REB3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EHD3", "url": "https://www.uniprot.org/uniprotkb/A0A480REB3", "locus": { "chromosome": "3", "start_pos": 108100401, "end_pos": 108134906, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035987", "url": "https://www.ensembl.org/id/ENSSSCG00000035987" } ] } } ], "crossref": [ { "id": "ENSSSCG00000035987", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035987", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00052", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00052", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09913", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09913", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100621933", "url": "https://www.ncbi.nlm.nih.gov/gene/100621933", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000261", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000261", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030381", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030381", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031692", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031692", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100621933", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621933", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LMIGQYS", "url": "https://omabrowser.org/oma/group/LMIGQYS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480REB3", "url": "https://www.orthodb.org/?gene=A0A480REB3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11216", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11216", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11216:SF67", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11216:SF67", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00350", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00350", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12763", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12763", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16880", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16880", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18150", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18150", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-983231", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983231", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020943317", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943317", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B1T2", "url": "https://www.uniprot.org/uniprotkb/A0A287B1T2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B1T2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B1T2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480REB3", "url": "https://www.uniprot.org/uniprotkb/A0A480REB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480REB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480REB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FR38", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FR38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FR38-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FR38-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSWLGSDDRRKKEPEVFQTVSEGLKKLYRTKLLPLEEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGEIEGIIPGNALVVDPKKPFRKLNAFGNAFLNRFVCAQLPNPVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSEVIKALKNHEDKMRVVLNKADQIETQQLMRVYGALMWSLGKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFRDIQSLPRNAALRKLNDLIKRARLAKVHAYIISFLKKEMPSVFGKDNKKKELVNNLAEIYGRIEREHQISPGDFPNLKRMQDQLQAQDFSKFQPLKSKLLEVVDDMLAHDIAQLMQLVRQEETQRPIQMVKGGAFEGTLHGPFGHGYGEGAGEGIDDAEWVVARDKPMYDEIFYTLSPVDGKITGANAKKEMVRSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKVKLEGHELPNELPAHLIPPSKRKADE", "length": 535, "header": "tr|A0A480REB3-1|A0A480REB3_PIG Isoform 1 of EH domain containing 3 OS=Sus scrofa OX=9823 GN=EHD3 PE=1 SV=1 CANONICAL=A0A480REB3-1" }, "isoforms": [ { "isoform_ac": "A0A287B1T2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480REB3/entry#A0A287B1T2-1", "sequence": { "sequence": "PEPPAQAAADWLGSDDRRKKEPEVFQTVSEGLKKLYRTKLLPLEEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGEIEGIIPGNALVVDPKKPFRKLNAFGNAFLNRFVCAQLPNPVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSEVIKALKNHEDKMRVVLNKADQIETQQLMRVYGALMWSLGKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFRDIQSLPRNAALRKLNDLIKRARLAKVHAYIISFLKKEMPSVFGKDNKKKELVNNLAEIYGRIEREHQISPGDFPNLKRMQDQLQAQDFSKFQPLKSKLLEVVDDMLAHDIAQLMQLVRQEETQRPIQMVKGGAFEGTLHGPFGHGYGEGAGEGIDDAEWVVARDKPMYDEIFYTLSPVDGKITGANAKKEMVRSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKVKLEGHELPNELPAHLIPPSKRKADE", "length": 542, "header": "tr|A0A287B1T2-1|A0A480REB3_PIG Computationally mapped isoform of EH domain containing 3 OS=Sus scrofa OX=9823 GN=EHD3 PE=1 SV=2 CANONICAL=A0A480REB3-1" }, "locus": { "chromosome": "3", "start_pos": 108134855, "end_pos": 108105272, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041399.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041399.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050368.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050368.2" } ] } }, { "isoform_ac": "A0A480REB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480REB3/entry#A0A480REB3-1", "sequence": { "sequence": "MFSWLGSDDRRKKEPEVFQTVSEGLKKLYRTKLLPLEEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGEIEGIIPGNALVVDPKKPFRKLNAFGNAFLNRFVCAQLPNPVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSEVIKALKNHEDKMRVVLNKADQIETQQLMRVYGALMWSLGKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFRDIQSLPRNAALRKLNDLIKRARLAKVHAYIISFLKKEMPSVFGKDNKKKELVNNLAEIYGRIEREHQISPGDFPNLKRMQDQLQAQDFSKFQPLKSKLLEVVDDMLAHDIAQLMQLVRQEETQRPIQMVKGGAFEGTLHGPFGHGYGEGAGEGIDDAEWVVARDKPMYDEIFYTLSPVDGKITGANAKKEMVRSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKVKLEGHELPNELPAHLIPPSKRKADE", "length": 535, "header": "tr|A0A480REB3-1|A0A480REB3_PIG Isoform 1 of EH domain containing 3 OS=Sus scrofa OX=9823 GN=EHD3 PE=1 SV=1 CANONICAL=A0A480REB3-1" }, "locus": { "chromosome": "3", "start_pos": 108134400, "end_pos": 108105272, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095027.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095027.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079341.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079341.1" } ] } }, { "isoform_ac": "A0A8W4FR38-1", "url": "https://www.uniprot.org/uniprotkb/A0A480REB3/entry#A0A8W4FR38-1", "sequence": { "sequence": "MFSWLGSDDRRKKEPEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGEIEGIIPGNALVVDPKKPFRKLNAFGNAFLNRFVCAQLPNPVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSEVIKALKNHEDKMRVVLNKADQIETQQLMRVYGALMWSLGKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFRDIQSLPRNAALRKLNDLIKRARLAKVHAYIISFLKKEMPSVFGKDNKKKELVNNLAEIYGRIEREHQISPGDFPNLKRMQDQLQAQDFSKFQPLKSKLLEVVDDMLAHDIAQLMQLVRQEETQRPIQMVKGGAFEGTLHGPFGHGYGEGAGEGIDDAEWVVARDKPMYDEIFYTLSPVDGKITGANAKKEMVRSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKVKLEGHELPNELPAHLIPPSKRKADE", "length": 513, "header": "tr|A0A8W4FR38-1|A0A480REB3_PIG Computationally mapped isoform of EH domain containing 3 OS=Sus scrofa OX=9823 GN=EHD3 PE=1 SV=1 CANONICAL=A0A480REB3-1" }, "locus": { "chromosome": "3", "start_pos": 108134400, "end_pos": 108105272, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095849.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095849.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080971.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080971.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B1T2", "url": "https://www.uniprot.org/uniprotkb/A0A287B1T2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100621933", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621933", "resource": "KEGG Pathway" }, { "id": "R-SSC-983231", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983231", "resource": "Reactome", "description": "Factors involved in megakaryocyte development and platelet production" } ], "orthologs": [ { "uniprot_canonical_ac": "F1NGM0-1", "protein_name": "EH domain containing 3", "gene_name": "EHD3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MFSWLGTDDRRRKDPEVFQTVSEGLKKLYKTKLLPLEEHYKFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGDVEGIVPGNALVVDPKKPFRKLNAFGNAFLNRFVCAQLPNPVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSEVIKALKNHEDKMRVVLNKADQIETQQLMRVYGALMWSLGKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFRDIQSLPRNAALRKLNDLIKRARLAKVHAYIISSLKKEMPSVFGKDNKKKELINNLGDIYARIEREHQISPGDFPNLRKMQDQLQAQDFSKFQPLKSKLLETVEDMLANDIAQLMVLVRQEESQRPTQMVKGGAFEGTLHGPFGHGYGEGAGEGIDDAEWVVARDKPMYDEIFYTLSPVDGKITGANAKKEMVRSKLPNTVLGKIWKLADIDKDGMLDDEEFALANHLIKVKLEGHELPNELPSHLLPPSKRKITE", "length": 535 }, "evidence": [ { "id": "A0A480REB3", "url": "https://omabrowser.org/oma/group/A0A480REB3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3I4G0-1", "protein_name": "EH domain-containing protein 3 isoform X1", "gene_name": "Ehd3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFSWLGNDDRRRKDPEVFQTVSEGLKKLYKTKLLPLEEYYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGDVEGIIPGNALVVDPKKPFRKLNAFGNAFLNRFVCAQLPNAVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSEVIKALKNHEDKMRVVLNKADQIETQQLMRVYGALMWSLGKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFRDIQSLPRNAALRKLNDLIKRARLAKVHAYIISSLKKEMPSVFGKDTKKKELVNNLAEIYGRIEREHQISPGDFPNLKRMQDQLQAQDFSKFQPLKNKLLEVVDDMLAHDIAQLMVLVRQEETQRPVQMVKGGAFEGTLQGPFGHGYGEGAGEGIDDAEWVVARDKPMYDEIFFTLSPVDGKITGANAKKEMVRSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKVKLEGHELPNELPAHLIPPSKRKISE", "length": 535 }, "evidence": [ { "id": "A0A480REB3", "url": "https://omabrowser.org/oma/group/A0A480REB3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q54ST5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKLNVQEQKETDKLFATSTDALKSLYSSKIKPLEQLTKFGDFFSPTLTDADIAAKPMILLLGQYSTGKTSFINYLLEKPFVGSNVAVEPSTDRFNAVMHGTDDRILPGNIVCVQSQDFPFKGLEKFGNGFMGRFQCSLSNAPILEKVSFIDTPGVLNIITHGGNEGKKVGRSYDFPQIVEWFAERSDMILLLFDAHKLDISDEYREAITKLKGHDEKIRIVLNKADNINAQQLLRVYGGLMWSLGRVITTPEVKKVTIGSFWSGPLQNKETENLLYSEMVDLIKDILLLPKNGAIRKVNDLVKRSRLVKVHALILNHLRSEMPVFGKEKKQAELIANLDKEFQKISLISRIPMGDFPDVDHYRTVLKVHDFTKFPKINEKMLAQLNEVLAVDFPNLLSRFPIDGTHKPSAYELNPFALDEVDENVRWTLFENVDISAFAPLFNSLNPMDGKIQGQVAKGPLFQSGLPNNVLAHIWRLSDVDRDGKMDIEEFALAMHLVNVKLKGYELPETLPTTLIPFSKRGGMFGSNPNSSSYQTILSQPQQQQQQYQQQFINNYEQQQQQQQQQQ", "length": 568 }, "evidence": [ { "id": "A0A480REB3", "url": "https://omabrowser.org/oma/group/A0A480REB3/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5TYP7-1", "protein_name": "EH domain-containing protein 3", "gene_name": "ehd3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFSWLGTDDRRKKDPEVFQTVSEGLKKLYKTKLLPLEEHYKFHEFHSPALEDADFDNKPMVLLVGQYSTGKTSFIRYLLEQDFPGMRIGPEPTTDSFIAVMHGTMEGLIPGNALVVDPKKPFRKLNAFGNAFLNRFVCAQLPNPVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSEVIKALKNHEDKIRVVLNKADQIETQQLMRVYGALMWSLGKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFKDIQSLPRNAALRKLNDLIKRARLAKVHAYIISSLKKEMPSVFGKDNKKKELINSLGEIYSRIEREHQISPGDFPNLKKMQEQLQAHDLNKFQPLKMKLLDTVDDMLAHDIAQLMVLVRQEETQRPNQVVKGGAFEGTMNGPFGHGYGEGAGEGIDEVEWVVARDKPMYDEIFYTLSPVNGKVTGANAKREMVKSKLPNTVLGKIWKLADIDKDGMLDDEEFALANHLIKVKLEGHELPSDLPGHLVPPSKRKVPE", "length": 535 }, "evidence": [ { "id": "A0A480REB3", "url": "https://omabrowser.org/oma/group/A0A480REB3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8R491-1", "protein_name": "EH domain-containing protein 3", "gene_name": "Ehd3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSWLGNDDRRKKDPEVFQTVSEGLKKLYKTKLLPLEEYYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGDVEGIIPGNALVVDPKKPFRKLNAFGNAFLNRFVCAQLPNAVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSEVIKALKNHEDKMRVVLNKADQIETQQLMRVYGALMWSLGKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFKDIQSLPRNAALRKLNDLIKRARLAKVHAYIISSLKKEMPSVFGKDTKKKELVNNLAEIYGRIEREHQISPGDFPNLKRMQDQLQAQDFSKFQPLKSKLLEVVDDMLAHDIAQLMVLVRQEETQRPVQMVKGGAFEGTLQGPFGHGYGEGAGEGIDDAEWVVARDKPMYDEIFYTLSPVDGKITGANAKKEMVRSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKVKLEGHELPSELPAHLLPPSKRKVAE", "length": 535 }, "evidence": [ { "id": "A0A480REB3", "url": "https://omabrowser.org/oma/group/A0A480REB3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q94CF0-1", "protein_name": "EH domain-containing protein 1", "gene_name": "EHD1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEIESVAAGSCSKENQMIYKEWFEFSDSDGDGRITGNDAIKFFTMSNLPRPELKQIWAIADSKRQGYLGFKEFIVAMQLVSLAQTGHEISHEVLISDVDFKNINPPTMEGLGVLMAKKKHSSKSSDPNMNGSPAADTSLTAHWFSSKSSKKISLSSVTSIVDGLKRLYIQKLKPLEVAYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSTYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHVTFVDTPGVLSGEKQRTQRAYDFTGVTSWFASKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFSDKPINEAATGPIGRELFEKEQDDLLADLKDIPKKACDRRINEFVKRARAAKIHAYIISHLKKEMPAIMGKAKAQQKLIDNLEDEFGKVQREHHLPKGDFPNVDHFREVLSGYNIDKFEKLKPKMLQTVDDMLGYDIPELLKNFKNPYD", "length": 545 }, "evidence": [ { "id": "A0A480REB3", "url": "https://omabrowser.org/oma/group/A0A480REB3/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NZN3-1", "protein_name": "EH domain-containing protein 3", "gene_name": "EHD3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFSWLGTDDRRRKDPEVFQTVSEGLKKLYKSKLLPLEEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGDMEGIIPGNALVVDPKKPFRKLNAFGNAFLNRFVCAQLPNPVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSEVIKALKNHEDKMRVVLNKADQIETQQLMRVYGALMWSLGKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFRDIQSLPRNAALRKLNDLIKRARLAKVHAYIISSLKKEMPSVFGKDNKKKELVNNLAEIYGRIEREHQISPGDFPNLKRMQDQLQAQDFSKFQPLKSKLLEVVDDMLAHDIAQLMVLVRQEESQRPIQMVKGGAFEGTLHGPFGHGYGEGAGEGIDDAEWVVARDKPMYDEIFYTLSPVDGKITGANAKKEMVRSKLPNSVLGKIWKLADIDKDGMLDDDEFALANHLIKVKLEGHELPNELPAHLLPPSKRKVAE", "length": 535 }, "evidence": [ { "id": "A0A480REB3", "url": "https://omabrowser.org/oma/group/A0A480REB3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QXY6-1", "protein_name": "EH domain-containing protein 3", "gene_name": "Ehd3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLGNDDRRKKDPEVFQTVSDGLKKLYKTKLLPLEEYYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGDVEGIIPGNALVVDPKKPFRKLNAFGNAFLNRFVCAQLPNAVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSEVIKALKNHEDKMRVVLNKADQIETQQLMRVYGALMWSLGKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFRDIQSLPRNAALRKLNDLIKRARLAKVHAYIISSLKKEMPSVFGKDTKKKELVNNLAEIYGRIEREHQISPGDFPNLKRMQDQLQAQDFSKFQPLKSKLLEVVDDMLAHDIAQLMVLVRQEETQRPVQMVKGGAFEGTLQGPFGHGYGEGAGEGIDDAEWVVARDKPMYDEIFYTLSPVDGKITGANAKKEMVRSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKVKLEGHELPSELPAHLLPPSKRKVSE", "length": 535 }, "evidence": [ { "id": "A0A480REB3", "url": "https://omabrowser.org/oma/group/A0A480REB3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A480REB3", "url": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480JZJ1-1", "uniprot_ac": "A0A480JZJ1", "uniprot_id": "A0A480JZJ1_PIG", "mass": { "chemical_mass": 144990.0, "monoisotopic_mass": 144990.0 }, "refseq": { "ac": "XP_020947755", "name": "DENN domain-containing protein 5B isoform X7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947755" }, "gene_names": [ { "name": "DENND5B", "type": "recommended", "evidence": [ { "id": "A0A480JZJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1" } ] }, { "name": "DENND5B", "type": "synonym", "evidence": [ { "id": "XP_020947755", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947755" } ] } ], "protein_names": [ { "name": "DENN domain containing 5B", "type": "synonym", "evidence": [ { "id": "A0A480JZJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1/entry#names_and_taxonomy" } ] }, { "name": "DENN domain-containing protein 5B isoform X7", "type": "synonym", "evidence": [ { "id": "XP_020947755", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947755" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480JZJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DENND5B", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1", "locus": { "chromosome": "5", "start_pos": 42879729, "end_pos": 42643115, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022636", "url": "https://www.ensembl.org/id/ENSSSCG00000022636" } ] } } ], "crossref": [ { "id": "ENSSSCG00000022636", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022636", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01757", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01757", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17691", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17691", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17693", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17693", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102165384", "url": "https://www.ncbi.nlm.nih.gov/gene/102165384", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047277", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047277", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047278", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047278", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047292", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047292", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047293", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047293", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102165384", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102165384", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LYQMHHA", "url": "https://omabrowser.org/oma/group/LYQMHHA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8W4FEN8", "url": "https://www.orthodb.org/?gene=A0A8W4FEN8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46070", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46070", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46070:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46070:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01477", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01477", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02759", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02759", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03455", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03455", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03456", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03456", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8876198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020947755", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947755", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BNA8", "url": "https://www.uniprot.org/uniprotkb/A0A287BNA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BNA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BNA8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480JZJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480JZJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEN8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEN8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8H8", "url": "https://www.uniprot.org/uniprotkb/I3L8H8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8H8-1", "url": "https://www.uniprot.org/uniprotkb/I3L8H8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LJN5", "url": "https://www.uniprot.org/uniprotkb/I3LJN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LJN5-1", "url": "https://www.uniprot.org/uniprotkb/I3LJN5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGSGAAPGPGSGSSPAACRFAHYFVLCGIDADSGLEPDELAGENFDQSPLRRTFKSKVLAHYPQNIEWNPFDQDAVNMLCMPKGLSFRTQNDNKDPQFHSFIITREDGSRTYGFVLTFYEEVTSKQICTAMQTLYQMHNAEHYSSVYASSSCSMDSLASSIDEGDTTSLLKLQRYNSYDISRDTLYVSKSICLITPLPFMQACKKFLIQLYKAVTSQQPPPLPLESYIHNILYEVPLPPPGRSLKFYGVYEPVICQRPGPSELPLSDYPLREAFELLGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELSEVLLQFGIPPEGSLHCSESTTKLKNLVLKDLVNDKKNGNVSANNISMYELLKGNETIARLQALAKRTGVTVEKMDLSASLSDKEKDLKLQCEEAELRDYQLNVQLREVFANRFTQMFADYEAFVIQTAQDMESWLTNREQMQNFDKASFLSDQPEPYLPFLSRFIETQMFATFIDNKIMSQWEEKDPLLRVFDSRIEKIRLYNVRAPTLRTSIYQKCSTLKEAAQSIEQRLMKMDHTAIHPHLLDMKIGQGKYEQGFFPKLQSDVLATGPTNNNRWVSRSATAQRRKDRLRQHSEHVGLDSDLREKYMQEARSLGKNLRQPKLSDLSPAVIAQTNWKFVEGLLKECRMKTKRMLVEKMGHEAVELGHGEANITGLEENTLIASLCDLLERIWSHGLQVKQGKSALWSHLIQFQDREEKQEHLAESPVALGPERRKSDSGVMLPTLRVSLIQDMRHIQNMSEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQLLTKKLYKRYAFLRCEEEREQFLYHLLSLNAVDYFCFTSVFTTIMIPYRAVIIPIKKLSNAIITSNPWICVSGELGDTGVMQIPKNLLEMTFECQNLGKLTTVQIGHDNSGLLAKWLVDCVMVRNEITGHTYRFPCGRWLGKGIDDGSLERILIGELMTSAADEDLVKQCRTPPQQKSPTMARRLSITSLTGKSTKPNAGQIQEGIGEAVNNIVKHFHKPEKERGSLTVLLCGESGLVAALEQVFHHGFKSARIFHKNVFIWDFIEKAVAYFETTDQILDNEDDVLIQKSSCKTFCHYVNAINTAPRNIGKDGKFQILVCLGTRDRLLPQWIPLLAECPAITRMYEESALLRDRMTVNSLIRILQTIQDFTIVLEGSLIKGVDV", "length": 1274, "header": "tr|A0A480JZJ1-1|A0A480JZJ1_PIG Isoform 1 of DENN domain containing 5B OS=Sus scrofa OX=9823 GN=DENND5B PE=1 SV=1 CANONICAL=A0A480JZJ1-1" }, "isoforms": [ { "isoform_ac": "A0A287BNA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1/entry#A0A287BNA8-1", "sequence": { "sequence": "MSGSGAAPGPGSGSSPAACRFAHYFVLCGIDADSGLEPDELAGENFDQSPLRRTFKSKVLAHYPQNIEWNPFDQDAVNMLCMPKGLSFRTQNDNKDPQFHSFIITREDGSRTYGFVLTFYEEVTSKQICTAMQTLYQMHNAEHYSSVYASSSCSMDSLASSIDEGDTTSLLKLQRYNSYDISRDTLYVSKSICLITPLPFMQACKKFLIQLYKAVTSQQPPPLPLESYIHNILYEVPLPPPGRSLKFYGVYEPVICQRPGPSELPLSDYPLREAFELLGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELSEVLLQFGIPPEGSLHCSESTTKLKNLVLKDLVNDKKNGNVSANNISMYELLKGNETIARLQALAKRTGVTVEKMDLSASLSDKEKDLKLQCEEAELRDYQLNVQLREVFANRFTQMFADYEAFVIQTAQDMESWLTNREQMQNFDKASFLSDQPEPYLPFLSRFIETQMFATFIDNKIMSQWEEKDPLLRVFDSRIEKIRLYNVRAPTLRTSIYQKCSTLKEAGELFRQRLNAADIVAPEPHDFCAERPVDTQSIEQRLMKMDHTAIHPHLLDMKIGQGKYEQGFFPKLQSDVLATGPTNNNRWVSRSATAQRRKDRLRQHSEHVGLDSDLREPSGELVVCQNSMAFWEWDQGLPPPARLPKKSFSERCLKYMQEARSLGKNLRQPKLSDLSPAVIAQTNWKFVEGLLKECRMKTKRMLVEKMGHEAVELGHGEANITGLEENTLIASLCDLLERIWSHGLQVKQGKSALWSHLIQFQDREEKQEHLAESPVALGPERRKSDSGVMLPTLRVSLIQDMRHIQNMSEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQLLTKKLYKRYAFLRCEEEREQFLYHLLSLNAVDYFCFTSVFTTIMIPYRAVIIPIKKLSNAIITSNPWICVSGELGDTGVMQIPKNLLEMTFECQNLGKLTTVQIGHDNSGLLAKWLVDCVMVRNEITGHTYRFPCGRWLGKGIDDGSLERILIGELMTSAADEDLVKQCRTPPQQKSPTMARRLSITSLTGKSTKPNAGQIQEGIGEAVNNIVKHFHKPEKERGSLTVLLCGESGLVAALEQVFHHGFKSARIFHKNVFIWDFIEKAVAYFETTDQILDNEDDVLIQKSSCKTFCHYVNAINTAPRNIGKDGKFQILVCLGTRDRLLPQWIPLLAECPAITRMYEESALLRDRMTVNSLIRILQTIQDFTIVLEGSLIKGVDV", "length": 1339, "header": "tr|A0A287BNA8-1|A0A480JZJ1_PIG Computationally mapped isoform of DENN domain containing 5B OS=Sus scrofa OX=9823 GN=DENND5B PE=1 SV=2 CANONICAL=A0A480JZJ1-1" }, "locus": { "chromosome": "5", "start_pos": 42865984, "end_pos": 42643314, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064369.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064369.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057647.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057647.2" } ] } }, { "isoform_ac": "A0A480JZJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1/entry#A0A480JZJ1-1", "sequence": { "sequence": "MSGSGAAPGPGSGSSPAACRFAHYFVLCGIDADSGLEPDELAGENFDQSPLRRTFKSKVLAHYPQNIEWNPFDQDAVNMLCMPKGLSFRTQNDNKDPQFHSFIITREDGSRTYGFVLTFYEEVTSKQICTAMQTLYQMHNAEHYSSVYASSSCSMDSLASSIDEGDTTSLLKLQRYNSYDISRDTLYVSKSICLITPLPFMQACKKFLIQLYKAVTSQQPPPLPLESYIHNILYEVPLPPPGRSLKFYGVYEPVICQRPGPSELPLSDYPLREAFELLGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELSEVLLQFGIPPEGSLHCSESTTKLKNLVLKDLVNDKKNGNVSANNISMYELLKGNETIARLQALAKRTGVTVEKMDLSASLSDKEKDLKLQCEEAELRDYQLNVQLREVFANRFTQMFADYEAFVIQTAQDMESWLTNREQMQNFDKASFLSDQPEPYLPFLSRFIETQMFATFIDNKIMSQWEEKDPLLRVFDSRIEKIRLYNVRAPTLRTSIYQKCSTLKEAAQSIEQRLMKMDHTAIHPHLLDMKIGQGKYEQGFFPKLQSDVLATGPTNNNRWVSRSATAQRRKDRLRQHSEHVGLDSDLREKYMQEARSLGKNLRQPKLSDLSPAVIAQTNWKFVEGLLKECRMKTKRMLVEKMGHEAVELGHGEANITGLEENTLIASLCDLLERIWSHGLQVKQGKSALWSHLIQFQDREEKQEHLAESPVALGPERRKSDSGVMLPTLRVSLIQDMRHIQNMSEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQLLTKKLYKRYAFLRCEEEREQFLYHLLSLNAVDYFCFTSVFTTIMIPYRAVIIPIKKLSNAIITSNPWICVSGELGDTGVMQIPKNLLEMTFECQNLGKLTTVQIGHDNSGLLAKWLVDCVMVRNEITGHTYRFPCGRWLGKGIDDGSLERILIGELMTSAADEDLVKQCRTPPQQKSPTMARRLSITSLTGKSTKPNAGQIQEGIGEAVNNIVKHFHKPEKERGSLTVLLCGESGLVAALEQVFHHGFKSARIFHKNVFIWDFIEKAVAYFETTDQILDNEDDVLIQKSSCKTFCHYVNAINTAPRNIGKDGKFQILVCLGTRDRLLPQWIPLLAECPAITRMYEESALLRDRMTVNSLIRILQTIQDFTIVLEGSLIKGVDV", "length": 1274, "header": "tr|A0A480JZJ1-1|A0A480JZJ1_PIG Isoform 1 of DENN domain containing 5B OS=Sus scrofa OX=9823 GN=DENND5B PE=1 SV=1 CANONICAL=A0A480JZJ1-1" }, "locus": { "chromosome": "5", "start_pos": 42865984, "end_pos": 42643314, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058288.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058288.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050079.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050079.2" } ] } }, { "isoform_ac": "A0A8W4FEN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1/entry#A0A8W4FEN8-1", "sequence": { "sequence": "MSGSGAAPGPGSGSSPAACRFAHYFVLCGIDADSGLEPDELAVLYQWLEADRHGKSQDAANTTSGENFDQSPLRRTFKSKVLAHYPQNIEWNPFDQDAVNMLCMPKGLSFRTQNDNKDPQFHSFIITREDGSRTYGFVLTFYEEVTSKQICTAMQTLYQMHNAEHYSSVYASSSCSMDSLASSIDEGDTTSLLKLQRYNSYDISRDTLYVSKSICLITPLPFMQACKKFLIQLYKAVTSQQPPPLPLESYIHNILYEVPLPPPGRSLKFYGVYEPVICQRPGPSELPLSDYPLREAFELLGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELSEVLLQFGIPPEGSLHCSESTTKLKNLVLKDLVNDKKNGNVSANNISMYELLKGNETIARLQALAKRTGVTVEKMDLSASLSDKEKDLKLQCEEAELRDYQLNVQLREVFANRFTQMFADYEAFVIQTAQDMESWLTNREQMQNFDKASFLSDQPEPYLPFLSRFIETQMFATFIDNKIMSQWEEKDPLLRVFDSRIEKIRLYNVRAPTLRTSIYQKCSTLKEAGELFRQRLNAADIVAPEPHDFCAERPVDTQSIEQRLMKMDHTAIHPHLLDMKIGQGKYEQGFFPKLQSDVLATGPTNNNRWVSRSATAQRRKDRLRQHSEHVGLDSDLREPSGELVVCQNSMAFWEWDQGLPPPARLPKKSFSERCLKYMQEARSLGKNLRQPKLSDLSPAVIAQTNWKFVEGLLKECRMKTKRMLVEKMGHEAVELGHGEANITGLEENTLIASLCDLLERIWSHGLQVKQGKSALWSHLIQFQDREEKQEHLAESPVALGPERRKSDSGVMLPTLRVSLIQDMRHIQNMSEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQLLTKKLYKRYAFLRCEEEREQFLYHLLSLNAVDYFCFTSVFTTIMIPYRAVIIPIKKLSNAIITSNPWICVSGELGDTGVMQIPKNLLEMTFECQNLGKLTTVQIGHDNSGLLAKWLVDCVMVRNEITGHTYRFPCGRWLGKGIDDGSLERILIGELMTSAADEDLVKQCRTPPQQKSPTMARRLSITSLTGKSTKPNAGQIQEGIGEAVNNIVKHFHKPEKERGSLTVLLCGESGLVAALEQVFHHGFKSARIFHKNVFIWDFIEKAVAYFETTDQILDNEDDVLIQKSSCKTFCHYVNAINTAPRNIGKDGKFQILVCLGTRDRLLPQWIPLLAECPAITRMYEESALLRDRMTVNSLIRILQTIQDFTIVLEGSLIKGVDV", "length": 1361, "header": "tr|A0A8W4FEN8-1|A0A480JZJ1_PIG Computationally mapped isoform of DENN domain containing 5B OS=Sus scrofa OX=9823 GN=DENND5B PE=1 SV=1 CANONICAL=A0A480JZJ1-1" }, "locus": { "chromosome": "5", "start_pos": 42865984, "end_pos": 42643314, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095617.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095617.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076775.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076775.1" } ] } }, { "isoform_ac": "I3L8H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1/entry#I3L8H8-1", "sequence": { "sequence": "MYQWLEADRHGKSQDAANTTSGENFDQSPLRRTFKSKVLAHYPQNIEWNPFDQDAVNMLCMPKGLSFRTQNDNKDPQFHSFIITREDGSRTYGFVLTFYEEVTSKQICTAMQTLYQMHNAEHYSSVYASSSCSMDSLASSIDEGDTTSLLKLQRYNSYDISRDTLYVSKSICLITPLPFMQACKKFLIQLYKAVTSQQPPPLPLESYIHNILYEVPLPPPGRSLKFYGVYEPVICQRPGPSELPLSDYPLREAFELLGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELSEVLLQFGIPPEGSLHCSESTTKLKNLVLKDLVNDKKNGNVSANNISMYELLKGNETIARLQALAKRTGVTVEKMDLSASLSDKEKDLKLQCEEAELRDYQLNVQLREVFANRFTQMFADYEAFVIQTAQDMESWLTNREQMQNFDKASFLSDQPEPYLPFLSRFIETQMFATFIDNKIMSQWEEKDPLLRVFDSRIEKIRLYNVRAPTLRTSIYQKCSTLKEAAQSIEQRLMKMDHTAIHPHLLDMKIGQGKYEQGFFPKLQSDVLATGPTNNNRWVSRSATAQRRKDRLRQHSEHVGLDSDLREKYMQEARSLGKNLRQPKLSDLSPAVIAQTNWKFVEGLLKECRMKTKRMLVEKMGHEAVELGHGEANITGLEENTLIASLCDLLERIWSHGLQVKQGKSALWSHLIQFQDREEKQEHLAESPVALGPERRKSDSGVMLPTLRVSLIQDMRHIQNMSEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQLLTKKLYKRYAFLRCEEEREQFLYHLLSLNAVDYFCFTSVFTTIMIPYRAVIIPIKKLSNAIITSNPWICVSGELGDTGVMQIPKNLLEMTFECQNLGKLTTVQIGHDNSGLLAKWLVDCVMVRNEITGHTYRFPCGRWLGKGIDDGSLERILIGELMTSAADEDLVKQCRTPPQQKSPTMARRLSITSLTGKSTKPNAGQIQEGIGEAVNNIVKHFHKPEKERGSLTVLLCGESGLVAALEQVFHHGFKSARIFHKNVFIWDFIEKAVAYFETTDQILDNEDDVLIQKSSCKTFCHYVNAINTAPRNIGKDGKFQILVCLGTRDRLLPQWIPLLAECPAITRMYEESALLRDRMTVNSLIRILQTIQDFTIVLEGSLIKGVDV", "length": 1253, "header": "tr|I3L8H8-1|A0A480JZJ1_PIG Computationally mapped isoform of DENN domain containing 5B OS=Sus scrofa OX=9823 GN=DENND5B PE=1 SV=5 CANONICAL=A0A480JZJ1-1" }, "locus": { "chromosome": "5", "start_pos": 42865984, "end_pos": 42740182, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029878.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029878.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020338.4", "url": "https://www.ensembl.org/id/ENSSSCP00000020338.4" } ] } }, { "isoform_ac": "I3LJN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1/entry#I3LJN5-1", "sequence": { "sequence": "MSGSGAAPGPGSGSSPAACRFAHYFVLCGIDADSGLEPDELAVLYQWLEADRHGKSQDAANTTSGENFDQSPLRRTFKSKVLAHYPQNIEWNPFDQDAVNMLCMPKGLSFRTQNDNKDPQFHSFIITREDGSRTYGFVLTFYEEVTSKQICTAMQTLYQMHNAEHYSSVYASSSCSMDSLASSIDEGDTTSLLKLQRYNSYDISRDTLYVSKSICLITPLPFMQACKKFLIQLYKAVTSQQPPPLPLESYIHNILYEVPLPPPGRSLKFYGVYEPVICQRPGPSELPLSDYPLREAFELLGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELSEVLLQFGIPPEGSLHCSESTTKLKNLVLKDLVNDKKNGNVSANNISMYELLKGNETIARLQALAKRTGVTVEKMDLSASLSDKEKDLKLQCEEAELRDYQLNVQLREVFANRFTQMFADYEAFVIQTAQDMESWLTNREQMQNFDKASFLSDQPEPYLPFLSRFIETQMFATFIDNKIMSQWEEKDPLLRVFDSRIEKIRLYNVRAPTLRTSIYQKCSTLKEAAQSIEQRLMKMDHTAIHPHLLDMKIGQGKYEQGFFPKLQSDVLATGPTNNNRWVSRSATAQRRKDRLRQHSEHVGLDSDLREVCGLLSWDASKQELGTRLTY", "length": 744, "header": "tr|I3LJN5-1|A0A480JZJ1_PIG Computationally mapped isoform of DENN domain containing 5B OS=Sus scrofa OX=9823 GN=DENND5B PE=1 SV=3 CANONICAL=A0A480JZJ1-1" }, "locus": { "chromosome": "5", "start_pos": 42809899, "end_pos": 42643314, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024435.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024435.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024297.3", "url": "https://www.ensembl.org/id/ENSSSCP00000024297.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L8H8", "url": "https://www.uniprot.org/uniprotkb/I3L8H8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102165384", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102165384", "resource": "KEGG Pathway" }, { "id": "R-SSC-8876198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "resource": "Reactome", "description": "RAB GEFs exchange GTP for GDP on RABs" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2UHC2-1", "protein_name": "DENN domain containing 5B", "gene_name": "DENND5B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSGSGAPGPGAAPCRFAHYFVLCGIDAESGLEPDELAGENFDQSPLRRTFKSKVLAHYPQNIEWNPFDQDAVNMLCMPKGLSFRTQADNRDPQLHSFIITREDGSRTYGFVLTFYEEVTSKQICTAMQTLYQMHNAEQYSSVCASSSCSMDSLASSIDEGDATSLAKLQRYNSYDISRDTLYVSKCICLITPLPFMQACKKFLVQLYKAVTSQQPPPLPLESYIHNILYEVPLPPPGRSLKFYGVYEPIICQRPGPNELPLSDYPLREVFELLGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKLEFIQEISEVLLQFGIPPEGNLHCSDSATKLKNLVLSDLVNDKKNGNIPGNALNMYELLKGNETIARLQALAKRTGVTMEKMTITAPLAEKEKDMKLQCEEVELRDYKLNVQLREVFANRFTQLFADYEAFVIQAAPDLESWLTNREQMQNFDKASFLSDQPEPYLPFLSHFIETQMFATFIDNKIISQWEEKDPFLRVFDSRIEKIRLYNVRAPALRTSNYQKCSTLKEAGCLSIRRLVLVDIVAPEPHFLSLEMQQADTQSIEQRLMKIDHTAIHPHLLDMKIGQGKYEQGFFPKLQSDVLATGPTNNNRWASRSATTQRRKDRLRQHSEHIGLDNDLREPSEELLLRQNSMAFWEWDQGPPPPARPPKKSFSECCLKYMQEARSLGKNLRQPKLSDLSPAVIAQTNSKFVEGLLKECRMKTKRMLVEKMGHEAVELGHGEANITGLEENTLIASLCDLLERIWSHGLQVKQGKSALWSHLLQYQEREEKQEHSAESPVAVGTERRKSDTGITLPTLRVSLIQDMRHVQNMSEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQPLAKKLYKRYAFLRCEEEREQFLYHLLSLNAVDYFCFTSVFTTIVIPYRAVIIPIKKLSNAITTSNPWICVSGELGDTGVMQIPKNLLEMTFECQNLGKLTTVQIGHDNSGLLAKWLVDCVMVRNEITGHTYKFPCGRWLGKGVDDGSLERILIGELVSSTSDEELGKQCRTPPQQKSPTTARRLSITSLTGKNTKPNAGQIQEGIGEAVNNIVKHFHKPEKERGSLTILLCGENGLVAALEQVFHHGFKSARIFHKNVFIWDFIEKAVAYFETSDQIGDNEEALLLQRSSCKTFCHYVNAINTAPRNIGKDGKFQILVCLGTRDHLLPQWIPLLAECPLITRMYEENALLRDRMTVNSLIRVLQTLQDFNIVLEGSLIKGVDV", "length": 1335 }, "evidence": [ { "id": "A0A480JZJ1", "url": "https://omabrowser.org/oma/group/A0A480JZJ1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8I5ZYN4-1", "protein_name": "DENN domain containing 5B", "gene_name": "Dennd5b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGSGAAPGPGSGSSPAACRFAHYFVLCGIDADSGLEPDELAGENFDQSPLRRTFKSKVLAHYPQNIEWNPFDQDAVNMLCMPKGLSFRTQADNKDPQFHSFIITREDGSRTYGFVLTFYEEVTSKQICTAMQTLYQMHNAEQYSSVYASSSCSMDSLASSIDEGDATSLLKLQRYNSYDINRDTLYVSKSICLITPLPFMQACRKFLLQLHKAVTSQQPPPLPLESYIHNILYEVPLPPPGRSLKFYGVYEPVICQRPGPNELPLSDYPLREACELLGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELSEVLLQFGIPPEGSLHCSESATKLKNMVLKDLANDKKNGNVPTNNVSVYELLKGSETIARLQALAKRTGVTVGKIDFPASLSEKEKDLKLQCEEADLRDSQLNVQLREVFANRFTQMFADYEAFVIQTAQDMESWLTSREQMQNFDKASFLSDQPEPYLPFLSRFIETQMFATFIDNKIMSQWEEKDPLLRVFDSRIEKMRLYNVRAPTLRTSIYQKCSSLKEAAQSIEQRLMKMDHTAIHPHLLDMKIGQGKYEQGFFPKLQSDVLATGPANNNRWVSRSTTAQRRKERLRQNAEHIGLDSDLREPSGELLVCQNSMAFWEWDQGPTPPARLPKKSFSECCLKYMQEARSLGKNLRQPKLSDLSPAVIAQTNWKFVEGLLKECRMKTKRMLVEKMGHEAVELGHGEANITGLEENTLIASLCDLLERIWSHGLLVKQGKSALWSHLIQFQDREEKQEHLTDSPVALGPERRKSDSGVMLPTLRVSLIQDMRHVQNMTEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQPLTKKLYKRYAFLRCEEEREQFLYHLLSLNAVDYFCFTSVFTTIMIPYRSVIIPIKKLSNAIITSNPWICVSGELGDTGVMQIPKNLLEMTFECQNLGKLTTVQIGHDNSGLLAKWLVDCVMVRNEITGHTYRFPCGRWLGKGVDDGSLERILIGELMTSASDEDLGKQCRTPPQQKSPTTTRRLSITSLTGKPAKPNAGQIQEGIGEAVNNIVKHFHKPEKERGSLTVLLCGENGLVAALEQVFHHGFKSARIFHKNVFIWDFVEKAVAYFESTDQILDNEDDMLIQKPSCKTFCHYVNAVNTAPRNIGKDGKFQILVCLGTRDHLLPQWIPLLAECPAITRMYEENALLRDHMTVNSLIRILQTIQDFTIVLEGSLIKGVDV", "length": 1311 }, "evidence": [ { "id": "A0A480JZJ1", "url": "https://omabrowser.org/oma/group/A0A480JZJ1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A2RSQ0-1", "protein_name": "DENN domain-containing protein 5B", "gene_name": "Dennd5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGSSAAPGPGSGSSPAACRFAHYFVLCGIDADSGLEPDELAGENFDQSPLRRTFKSKVLAHYPQNIEWNPFDQDAVNMLCMPKGLSFRTQADNKEPQFHSFIITREDGSRTYGFVLTFYEEVTSKQICTAMQTLYQMHNAEQYSSVYASSSCSMDSLASSIDEGDATSLLKLQRYNSYDINRDTLYVSKSICLITPLPFMQACKKFLFQLHKAVTSQQPPPLPLESYIHNILYEVPLPPPGRSLKFYGVYEPVICQRPGPNELPLSDYPLREACELLGLENLVQVFTCVLLEMQTLLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELSEVLLQFGIPPEGSLHSSESATKLKNMVLKDLANDKKNGNVPNNSVSVYELLKGSETIARLQALAKRTGVTMEKIDLPASLSEKEKDLKLQCEEADLRDSQLNVQLREVFANRFTQMFADYEAFVIQTAQDMESWLTNREQMQNFDKASFLSDQPEPYLPFLSRFIETQMFATFIDNKIMSQWEEKDPLLRVFDSRIEKIRLYNVRAPTLRTSIYQKCSSLKEAAQSIEQRLMKMDHTAIHPHLLDMKIGQGKYEQGFFPKLQSDVLATGPANNNRWVSRSATAQRRKERLRQSSEHIGLDSDLREKYMQEARSLGKNLRQPKLSDLSPAVIAQTNWKFVEGLLKECRMKTKRMLVEKMGHEAVELGHGEANITGLEENTLIASLCDLLERIWSHGLLVKQGKSALWSHLLQFQDREEKQEHLTDSPVALGPERRKSDSGVMLPTLRVSLIQDMRHIQNMTEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQPLTKKLYKRYAFLRCEEEREQFLYHLLSLNAVDYFCFTSVFTTIMIPYRSVIIPIKKLSNAIITSNPWICVSGELGDTGVMQIPKNLLEMTFECQNLGKLTTVQIGHDNSGLLAKWLVDCVMVRNEITGHTYRFPCGRWLGKGVDDGSLERILIGELMTSASDEDLGKQCRTPPQQKSPTTTRRLSITSLTGKPAKPNAGQIQEGIGEAVNNIVKHFHKPEKERGSLTVLLCGENGLVAALEQVFHHGFKSARIFHKNVFIWDFVEKAVAYFETTDQILDNEGDVLIQKPSSKTFCHYVNAINTAPRNIGKDGKFQILVCLGTRDHLLPQWIPLLAECPAITRMYEENALLRDHMTVNSLIRILQTIQDFTIVLEGSLIKGVDV", "length": 1274 }, "evidence": [ { "id": "A0A480JZJ1", "url": "https://omabrowser.org/oma/group/A0A480JZJ1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1MQ87-1", "protein_name": "DENN domain containing 5B", "gene_name": "DENND5B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSGSGAAPGPASGSSPAACRFAHYFVLCGIDADSGLEPDELAGENFDQSPLRRTFKSKVLAHYPQNIEWNPFDQDAVNMLCMPKGLSFRTQTDNKDPQFHSFIITREDGSRTYGFVLTFYEEVTSKQICTAMQTLYQMHNAEHYSSVYASSSCSMDSLASSIDEGDTTSLLKLQRYNSYDISRDTLYVSKSICLITPLPFMQACKKFLIQLYKAVTSQQPPPLPLESYIHNILYEVPLPPPGRSLKFYGVYEPVICQRPGLNELPLSDYPLREVFELLGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELSEVLLQFGIPPEGSLHCSESATKLKNLVLKDLVNDKKNGNVSANSISMYELLKGNETIARLQALAKRTGVTMEKMDLSASLSEKEKDLKLQCEDAELRDYQLNVQLREVFANRFTQMFADYEAFVIQTAQDLESWLTNREQMQNFDKASFLSDQPEPYLPFLSRFIETQMFATFIDNKIMSQWEEKDPLLRVFDSRIEKIRLYNVRAPTLRTSIYQKCSTLKEAAQSIEQRLMKMDHTAIHPHLLDMKIGQGKYEQGFFPKLQSDVLATGPTNNNRWVSRSATAQRRKDRLRQHSDHVGLDNDLREKYMQEARSLGKNLRQPKLSDLSPAVIAQTNWKFVEGLLKECRMKTKRMLVEKMGHEAVELGHGEANITGLEENTLIASLCDLLERIWSHGLQVKQGKSALWSHLIQFQDREEKQEHLAESPVALGPERRKSDSGVMLPTLRVSLIQDMRHIQNMSEIKTDVGRARAWIRLSLEKKVLSQHLKQLLSNQLLTKKLYKRYAFLRCEEEREQFLYHLLSLNAVDYFCFTSVFTTIMIPYRSVIIPIKKLSNAIITSNPWICVSGELGDTGVMQIPKNLLEMTFECQNLGKLTTVQIGHDNSGLLAKWLVDCVMVRNEITGHTYRFPCGRWLGKGIDDGSLERILIGELMTSAADEDLVKQCRTPPQQKSPTVARRLSITSLTGKTTKPNAGQIQEGIGEAVNNIVKHFHKPEKERGSLTVLLCGESGLVAALEQVFHHGFKSARIFHKNVFIWDFIERAVAYFETTDQILDNEDDVLIQKSSCKTFCHYVNAINTAPRNIGKDGKFQILVCLGTRDRLLPQWIPLLAECPAITRMYEESALLRDHMTVNSLIRILQTIQDFTIVLEGSLIKGVDV", "length": 1274 }, "evidence": [ { "id": "A0A480JZJ1", "url": "https://omabrowser.org/oma/group/A0A480JZJ1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6NXD8-1", "protein_name": "DENN domain-containing protein 5B", "gene_name": "dennd5b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSATMSGSGSAPCRFAHYFIVCGLDDETGLEPDALAALYQWLEADRQGKDPEATAAGENFDQSPLKRTFKSKVLAHYPENIECNPFDQDAVNMLCMPKGLSFRTQRDSLAPHFHSFLITREDGSRTYGFVHTFYEEVTSPQICSAMQTLHQMHQAEHNTSAQNCTSSSSSSSSSSSSSSMDSLSSSLDDVDSPSAHGGRRTCEGYDSIRDTLYVSKAMCLIAPMPFMHACKRFLAQMHRAVSCSPPPPLPLESYIYNVLYEVPLPASGRSLKFHGVYEPILCQRPGVGELPLADFPLADAFRLLGVENLVQLFTCVLLEMQILLYSQDYQRLMVVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHCIELPEDFPQFPNRSEFIQELSEVLLSFGQSPEGGSSSPEPAVMSLQTSVLEKELKSTSLRELVDDKTNGNLGGEALDVLELLQGNPTLERLQALAKRTGVKVARLEALAAGQKGDEGVGGRSPVEEEELRNAKLNVQLREVFAARFATMFADYESFVIQNSPDLESWLTNREQMHNFDKASFLSDQPEPYLPFLSHFIETQMFATFIDNKIMSQWEEKEPLLRVFDGRIEKARLYNVRAPSLRSSVYQKCTFLKESAQAIEQRLRKIDHTAIHPHLLDMKIGQGKYQQGFFPKLQADVLASGPTSNKWSNRTCSTQRRVERHRQQNEHLVLDNELKEKYMQEARNLGKNLRQPKLSDLSPAVIAQTNWKFVEGLLKECKMKTKRMLVEKMGREAVELGHGEANITGLEENTLIASLCDLLERIWSHGLQVKQGKSALWSHLLHYQAREEKNEQQLESPVSNGQERRKTESSVGLPGLRVSVIQDMRHIQNMAEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQALTKKLYKRYAFLRCEEEKEQFLFHLLSLNAVDYFCFTSVFTTIMIPYRAVIIPIKKLSNAMTTSNPWLCVSGELGDSGILQITKNILEMTFDCQNLGKLTTVQLGHDNSGLLAKWLVDCVMVRNEITGHTYKFPCGRWLGKGVDDGSLERVLIGEFVVPCGDDEGGRGSKTPPLQRSPSQIRRISITSLTGKGNKPTTVQIQESIGEAVNNIIKHFHKPEKERGSLTVLLCGEGGLVWALEQFFHHGFRSARIFQKNVFVWDFFERIVAFMENRDQTGDLQESPEPLSLNSESLCRYVNAINNMPRNIGKDGKFQLLVCLGARDRLLPQWLPLLAESPVITRMYEENALLRDKLTVSSLLGVLETLHDFPITLETSLTKSVEL", "length": 1311 }, "evidence": [ { "id": "A0A480JZJ1", "url": "https://omabrowser.org/oma/group/A0A480JZJ1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6ZUT9-1", "protein_name": "DENN domain-containing protein 5B", "gene_name": "DENND5B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSGSCAAPGPGSGSSPAACRFAHYFVLCGIDADSGLEPDELAGENFDQSPLRRTFKSKVLAHYPQNIEWNPFDQDAVNMLCMPKGLSFRTQTDNKDPQFHSFIITREDGSRTYGFVLTFYEEVTSKQICTAMQTLYQMHNAEHYSSVYASSSCSMDSLASSLDEGDTTSLLKLQRYNSYDISRDTLYVSKSICLITPLPFMQACKKFLIQLYKAVTSQQPPPLPLESYIHNILYEVPLPPPGRSLKFYGVYEPVICQRPGPSELPLSDYPLREAFELLGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELSEVLVQFGIPPEGSLHCSESTSKLKNMVLKDLVNDKKNGNVCTNNISMYELLKGNETIARLQALAKRTGVAVEKMDLSASLGEKDKDLKLHCEEAELRDYQLNVQLREVFANRFTQMFADYEAFVIQTAQDMESWLTNREQMQNFDKASFLSDQPEPYLPFLSRFIETQMFATFIDNKIMSQWEEKDPLLRVFDTRIDKIRLYNVRAPTLRTSIYQKCSTLKEAAQSIEQRLMKMDHTAIHPHLLDMKIGQGKYEQGFFPKLQSDVLATGPTSNNRWVSRSATAQRRKERLRQHSEHVGLDNDLREKYMQEARSLGKNLRQPKLSDLSPAVIAQTNCKFVEGLLKECRMKTKRMLVEKMGHEAVELGHGEANITGLEENTLIASLCDLLERIWSHGLQVKQGKSALWSHLIQFQDREEKQEHLAESPVALGPERRKSDSGVMLPTLRVSLIQDMRHIQNMSEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQPLTKKLYKRYAFLRCEEEREQFLYHLLSLNAVDYFCFTSVFTTIMIPYRSVIIPIKKLSNAIITSNPWICVSGELGDTGVMQIPKNLLEMTFECQNLGKLTTVQIGHDNSGLLAKWLVDCVMVRNEITGHTYRFPCGRWLGKGIDDGSLERILIGELMTSASDEDLVKQCRTPPQQKSPTTARRLSITSLTGKNNKPNAGQIQEGIGEAVNNIVKHFHKPEKERGSLTVLLCGENGLVAALEQVFHHGFKSARIFHKNVFIWDFIEKVVAYFETTDQILDNEDDVLIQKSSCKTFCHYVNAINTAPRNIGKDGKFQILVCLGTRDRLLPQWIPLLAECPAITRMYEESALLRDRMTVNSLIRILQTIQDFTIVLEGSLIKGVDV", "length": 1274 }, "evidence": [ { "id": "A0A480JZJ1", "url": "https://omabrowser.org/oma/group/A0A480JZJ1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A480JZJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A480JZJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A480JZJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of triglyceride transport", "id": "GO:1905885", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905885", "evidence": [ { "database": "UniProtKB", "id": "A0A480JZJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 436, "end_pos": 438, "annotation": "n_glycosylation_sequon" }, { "start_pos": 441, "end_pos": 443, "annotation": "n_glycosylation_sequon" }, { "start_pos": 451, "end_pos": 453, "annotation": "n_glycosylation_sequon" }, { "start_pos": 768, "end_pos": 770, "annotation": "n_glycosylation_sequon" }, { "start_pos": 855, "end_pos": 857, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480JZJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1" }, { "id": "PS50095", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50095" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PLAT", "eco_id": "ECO_0000259", "start_pos": 936, "end_pos": 1044, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A480JZJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1" }, { "id": "PS50826", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50826" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RUN", "eco_id": "ECO_0000259", "start_pos": 772, "end_pos": 932, "start_aa": "Leu", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A480JZJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JZJ1" }, { "id": "PS50211", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50211" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UDENN", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 581, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 436, "end_pos": 438 }, { "start_pos": 441, "end_pos": 443 }, { "start_pos": 451, "end_pos": 453 }, { "start_pos": 768, "end_pos": 770 }, { "start_pos": 855, "end_pos": 857 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1SE54-1", "uniprot_ac": "A0A4X1SE54", "uniprot_id": "A0A4X1SE54_PIG", "mass": { "chemical_mass": 19826.0, "monoisotopic_mass": 19826.0 }, "refseq": { "ac": "XP_003483651", "name": "coiled-coil domain-containing protein 115", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483651" }, "gene_names": [ { "name": "CCDC115", "type": "recommended", "evidence": [ { "id": "A0A4X1SE54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SE54" } ] }, { "name": "VMA22", "type": "recommended", "evidence": [ { "id": "A0A4X1SE54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SE54" } ] }, { "name": "CCDC115", "type": "synonym", "evidence": [ { "id": "XP_003483651", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483651" } ] }, { "name": "VMA22", "type": "synonym", "evidence": [ { "id": "A0A4X1SE54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SE54" } ] } ], "protein_names": [ { "name": "Vacuolar ATPase assembly protein VMA22", "type": "recommended", "evidence": [ { "id": "A0A4X1SE54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SE54/entry#names_and_taxonomy" } ] }, { "name": "Coiled-coil domain-containing protein 115", "type": "synonym", "evidence": [ { "id": "A0A4X1SE54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SE54/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 115", "type": "synonym", "evidence": [ { "id": "XP_003483651", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483651" } ] } ], "function": [ { "annotation": "Accessory component of the proton-transporting vacuolar (V)-ATPase protein pump involved in intracellular iron homeostasis. In aerobic conditions, required for intracellular iron homeostasis, thus triggering the activity of Fe(2+) prolyl hydroxylase (PHD) enzymes, and leading to HIF1A hydroxylation and subsequent proteasomal degradation. Necessary for endolysosomal acidification and lysosomal degradation. May be involved in Golgi homeostasis.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FF61", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF61#function" }, { "database": "UniProtKB", "id": "ARBA00059225", "url": "https://www.uniprot.org/uniprotkb/ARBA00059225#function" }, { "database": "UniProtKB", "id": "A0A287A361", "url": "https://www.uniprot.org/uniprotkb/A0A287A361#function" }, { "database": "UniProtKB", "id": "A0A4X1SE54", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SE54#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SE54", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SE54" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VMA22", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SE54", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000035628", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035628", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100736657", "url": "https://www.ncbi.nlm.nih.gov/gene/100736657", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "A0A287A361", "url": "https://www.ebi.ac.uk/intact/interactors/id:A0A287A361*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR040357", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100736657", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736657", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YFMDQLE", "url": "https://omabrowser.org/oma/group/YFMDQLE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SE54", "url": "https://www.orthodb.org/?gene=A0A4X1SE54", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31996", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31996", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31996:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31996:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21730", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21730", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8980692", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003483651", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483651", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A361", "url": "https://www.uniprot.org/uniprotkb/A0A287A361", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A361-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A361-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SE54", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SE54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SE54-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SE54-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FF61", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FF61-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF61-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAANLRAELDSLLLQLLGDLEELETKRAALNARVEEGWLSLSKARYAMGAKSVGPLQYASRMEPQVCVCTSEAQDGLQKFWLVRAGARTPEEVGPRESALRKRKGPTKTAEPEPSPAPQDPLNWFGILVPHSLRQAQASFREGLQLAADMASLQIRIDWGRNQLRGLQEKLKQLEPGAA", "length": 180, "header": "tr|A0A4X1SE54-1|A0A4X1SE54_PIG Isoform 1 of Vacuolar ATPase assembly protein VMA22 OS=Sus scrofa OX=9823 GN=VMA22 PE=1 SV=1 CANONICAL=A0A4X1SE54-1" }, "isoforms": [ { "isoform_ac": "A0A287A361-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SE54/entry#A0A287A361-1", "sequence": { "sequence": "MAAANLRAELDSLLLQLLGDLEELETKRAALNARVEEGWLSLSKARYAMGAKSVGPLQYASRMEPQVCVCTSEAQDGLQKFWLVRAGARTPEEVGPRESGKQGRVICWFYDGQEKKRTDSHLNYKGKALRKRKGPTKTAEPEPSPAPQDPLNWFGILVPHSLRQAQASFREGLQLAADMASLQIRIDWGRNQLRGLQEKLKQLEPGAA", "length": 208, "header": "tr|A0A287A361-1|A0A4X1SE54_PIG Computationally mapped isoform of Vacuolar ATPase assembly protein VMA22 OS=Sus scrofa OX=9823 GN=VMA22 PE=1 SV=2 CANONICAL=A0A4X1SE54-1" }, "locus": { "chromosome": "15", "start_pos": 31978242, "end_pos": 31975263, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047941.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047941.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038387.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038387.2" } ] } }, { "isoform_ac": "A0A4X1SE54-1", "url": 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"MAAANLRAELDSLLLQLLGDLEELETKRAALNARVEEGWLSLSKARYAMGAKSVGPLQYASRMEPQVCVCTSEAQDGLQKFWLVRAGARTPEEVGPRESGKQGRVICWFYDGQEKKRTDSHLNYKGKGGSFLRGFSNSLRKRKGPTKTAEPEPSPAPQDPLNWFGILVPHSLRQAQASFREGLQLAADMASLQIRIDWGRNQLRGLQEKLKQLEPGAA", "length": 218, "header": "tr|A0A8W4FF61-1|A0A4X1SE54_PIG Computationally mapped isoform of Vacuolar ATPase assembly protein VMA22 OS=Sus scrofa OX=9823 GN=VMA22 PE=1 SV=1 CANONICAL=A0A4X1SE54-1" }, "locus": { "chromosome": "15", "start_pos": 31978242, "end_pos": 31975263, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100467.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100467.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077880.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077880.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": 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"https://www.uniprot.org/uniprotkb/A0A5G2RJQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1QHI4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1QHI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1QHI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1QHI4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDD8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDD8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHL7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHL7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPJ5", "url": "https://www.uniprot.org/uniprotkb/F1SPJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPJ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SPJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATETVELHKLKLAELKQECLARGLETKGIKQDLINRLQAYLEEHAEEEANEEDVLGDETEEEEPKPIELPVKEEEPPEKTVDVAAEKKVVKITSEMPQTERMQKRAERFNVPVSLESKKAARAARFGISSVPSKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRKRAERFGIA", "length": 210, "header": "tr|A0A480SMR3-1|A0A480SMR3_PIG Isoform 1 of SAP domain-containing ribonucleoprotein OS=Sus scrofa OX=9823 GN=SARNP PE=1 SV=1 CANONICAL=A0A480SMR3-1" }, "isoforms": [ { "isoform_ac": "A0A480SMR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3/entry#A0A480SMR3-1", "sequence": { "sequence": "MATETVELHKLKLAELKQECLARGLETKGIKQDLINRLQAYLEEHAEEEANEEDVLGDETEEEEPKPIELPVKEEEPPEKTVDVAAEKKVVKITSEMPQTERMQKRAERFNVPVSLESKKAARAARFGISSVPSKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRKRAERFGIA", "length": 210, "header": "tr|A0A480SMR3-1|A0A480SMR3_PIG Isoform 1 of SAP domain-containing ribonucleoprotein OS=Sus scrofa OX=9823 GN=SARNP PE=1 SV=1 CANONICAL=A0A480SMR3-1" }, "locus": { "chromosome": "5", "start_pos": 21261852, "end_pos": 21206831, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047885.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047885.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047451.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047451.1" } ] } }, { "isoform_ac": "A0A4X1WB32-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3/entry#A0A4X1WB32-1", "sequence": { "sequence": "MATETVELHKLKLAELKQECLARGLETKGIKQDLINRLQAYLEEHAEEEANEEDVLGDETEEEEPKPIELPVKEEEPPEKTVDVAAEKKVVKITSEMPQTERMQKRAERFNVPVSLESKKAARAARFGISSVPSKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEKIYLEYFIGLEGKMK", "length": 212, "header": "tr|A0A4X1WB32-1|A0A480SMR3_PIG Computationally mapped isoform of SAP domain-containing ribonucleoprotein OS=Sus scrofa OX=9823 GN=SARNP PE=1 SV=1 CANONICAL=A0A480SMR3-1" }, "locus": { "chromosome": "5", "start_pos": 21261852, "end_pos": 21209665, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079604.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079604.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065406.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065406.1" } ] } }, { "isoform_ac": "A0A5G2QAZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3/entry#A0A5G2QAZ5-1", "sequence": { "sequence": "MVPSWIRQTEPRRELPKDSFLHELLAELKQECLARGLETKGIKQDLINRLQAYLEEHAEEEANEEDVLGDETEEEEPKPIELPVKEEEPPEKTVDVAAEKKVVKITSEMPQTERMQKRAERFNVPVSLESKKAARAARFGISSVPSKGKNTETSEKVNLDKLKERAQRFGLNVSSISRKSGDDCPKNRTGYLVLHLMQSFDSPPLID", "length": 207, "header": "tr|A0A5G2QAZ5-1|A0A480SMR3_PIG Computationally mapped isoform of SAP domain-containing ribonucleoprotein OS=Sus scrofa OX=9823 GN=SARNP PE=1 SV=2 CANONICAL=A0A480SMR3-1" }, "locus": { "chromosome": "5", "start_pos": 21253382, "end_pos": 21238992, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079480.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079480.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061207.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061207.2" } ] } }, { "isoform_ac": "A0A5G2RJQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3/entry#A0A5G2RJQ8-1", "sequence": { "sequence": "MVPSWIRQTEPRRELPKDSFLHELLAELKQECLARGLETKGIKQDLINRLQAYLEEHAEEEANEEDVLGDETEEEEPKPIELPVKEEEPPEKTVDVAAEKKVVKITSEMPQTERMQKRAERFNVPVSLESKKAARAARFGISSVPSKGKNTETSEKVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEGK", "length": 211, "header": "tr|A0A5G2RJQ8-1|A0A480SMR3_PIG Computationally mapped isoform of SAP domain-containing ribonucleoprotein OS=Sus scrofa OX=9823 GN=SARNP PE=1 SV=2 CANONICAL=A0A480SMR3-1" }, "locus": { "chromosome": "5", "start_pos": 21253382, "end_pos": 21209670, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076511.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076511.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072164.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072164.2" } ] } }, { "isoform_ac": "A0A8D1QHI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3/entry#A0A8D1QHI4-1", "sequence": { "sequence": "MATETVELHKLKLAELKQECLARGLETKGIKQDLINRLQAYLEEHAEEEANEEDVLGDETEEEEPKPIELPVKEEEPPEKTVDVAAEKKVVKITSEMPQTERMQKRAERFNVPVSLESKKAARAARFGISSVPSKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEVQVLDCVM", "length": 205, "header": "tr|A0A8D1QHI4-1|A0A480SMR3_PIG Computationally mapped isoform of SAP domain-containing ribonucleoprotein OS=Sus scrofa OX=9823 GN=SARNP PE=1 SV=1 CANONICAL=A0A480SMR3-1" }, "locus": { "chromosome": "5", "start_pos": 21261852, "end_pos": 21201780, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071634.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071634.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064583.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064583.1" } ] } }, { "isoform_ac": "A0A8W4FDD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3/entry#A0A8W4FDD8-1", "sequence": { "sequence": "MVPSWIRQTEPRRELPKDSFLHELLAELKQECLARGLETKGIKQDLINRLQAYLEEHAEEEANEEDVLGDETEEEEPKPIELPVKEEEPPEKTVDVAAEKKVVKITSEMPQTERMQKRAERFNVPVSLESKKAARAARFGISSVPSKGKNTETSEKVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEVKYT", "length": 213, "header": "tr|A0A8W4FDD8-1|A0A480SMR3_PIG Computationally mapped isoform of SAP domain-containing ribonucleoprotein OS=Sus scrofa OX=9823 GN=SARNP PE=1 SV=1 CANONICAL=A0A480SMR3-1" }, "locus": { "chromosome": "5", "start_pos": 21253382, "end_pos": 21209702, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104691.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104691.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077328.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077328.1" } ] } }, { "isoform_ac": "A0A8W4FHL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3/entry#A0A8W4FHL7-1", "sequence": { "sequence": "MLPPPCFRWSDAPGRTLKPEERPPKIGQPLRALDFRRPKELAELKQECLARGLETKGIKQDLINRLQAYLEEHAEEEANEEDVLGDETEEEEPKPIELPVKEEEPPEKTVDVAAEKKVVKITSEMPQTERMQKRAERFNVPVSLESKKAARAARFGISSVPSKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRKRAERFGIA", "length": 238, "header": "tr|A0A8W4FHL7-1|A0A480SMR3_PIG Computationally mapped isoform of SAP domain-containing ribonucleoprotein OS=Sus scrofa OX=9823 GN=SARNP PE=1 SV=1 CANONICAL=A0A480SMR3-1" }, "locus": { "chromosome": "5", "start_pos": 21261355, "end_pos": 21206831, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096509.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096509.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078815.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078815.1" } ] } }, { "isoform_ac": "F1SPJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3/entry#F1SPJ5-1", "sequence": { "sequence": "MLPPPCFRWSDAPGRTLKPEERPPKIGQPLRALDFRRPKELAELKQECLARGLETKGIKQDLINRLQAYLEEHAEEEANEEDVLGDETEEEEPKPIELPVKEEEPPEKTVDVAAEKKVVKITSEMPQTERMQKRAERFNVPVSLESKKAARAARFGISSVPSKGKNTETSEKVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTELVEKNTRFGIS", "length": 236, "header": "tr|F1SPJ5-1|A0A480SMR3_PIG Computationally mapped isoform of SAP domain-containing ribonucleoprotein OS=Sus scrofa OX=9823 GN=SARNP PE=1 SV=4 CANONICAL=A0A480SMR3-1" }, "locus": { "chromosome": "5", "start_pos": 21261355, "end_pos": 21209482, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000387.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000387.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000381.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000381.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WB32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WB32" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517942", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517942", "resource": "KEGG Pathway" }, { "id": "R-SSC-159236", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159236", "resource": "Reactome", "description": "Transport of Mature mRNA derived from an Intron-Containing Transcript" }, { "id": "R-SSC-72187", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72187", "resource": "Reactome", "description": "mRNA 3'-end processing" } ], "orthologs": [ { "uniprot_canonical_ac": "P82979-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "SARNP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATETVELHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEHAEEEANEEDVLGDETEEEETKPIELPVKEEEPPEKTVDVAAEKKVVKITSEIPQTERMQKRAERFNVPVSLESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRKRAERFGIA", "length": 210 }, "evidence": [ { "id": "A0A480SMR3", "url": "https://omabrowser.org/oma/group/A0A480SMR3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q498U4-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "Sarnp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATETVELHKLKLAELKQECLARGLETKGIKQDLINRLQAYLEEHAEEEANEEDVLGDETEEEEPKPIELPVKEEEPPEKVVDMASEKKVVKITSGIPQTERMQKRAERFNVPVSLESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRKRAERFGIA", "length": 210 }, "evidence": [ { "id": "A0A480SMR3", "url": "https://omabrowser.org/oma/group/A0A480SMR3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9D1J3-1", "protein_name": "SAP domain-containing ribonucleoprotein", "gene_name": "Sarnp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAETVELHKLKLAELKQECLARGLETKGIKQDLINRLQAYLEDHAEEEANEEDVLGDETEEEEPKPIELPVKEEEPPEKAVDMASEKKVVKITSGIPQTERMQKRAERFNVPVSLESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRKRAERFGIA", "length": 210 }, "evidence": [ { "id": "A0A480SMR3", "url": "https://omabrowser.org/oma/group/A0A480SMR3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VHC8-1", "protein_name": "SAP domain-containing protein", "gene_name": "Dmel\\CG8149", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPESDVTKMKVADLKRELKLRGLAVNGNKTELQDRLQTALLEGDLSLEDSAIADAIDDDDVSFTDEDEHKLLGDENDDELLKSPVSTPTTVAIPDLLAEEKTSSAPDAAAPTKKIVLKRNNSQQSTGTVASTGTTPSKENEAPAAAASDSTGETPTKKHKPIVVGPKTEGEKPSGDKKLNQLTAQERLELRAKKFGITPPAVANTATAVAVAINKSSSASITANKGNKETEEQQKEALKKRAERFGFVVPDKAPTSKADDRLQKRKERFGAGAVSAATTTPTTTESKDAWSEKARARLERFKTAPSTN", "length": 308 }, "evidence": [ { "id": "A0A480SMR3", "url": "https://omabrowser.org/oma/group/A0A480SMR3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A480SMR3", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A480SMR3", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A480SMR3", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A480SMR3", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3" } ], "pmid": "" }, { "name": "mRNA export from nucleus", "id": "GO:0006406", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006406", "evidence": [ { "database": "UniProtKB", "id": "A0A480SMR3", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3" } ], "pmid": "" }, { "name": "regulation of translation", "id": "GO:0006417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006417", "evidence": [ { "database": "UniProtKB", "id": "A0A480SMR3", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3" } ], "pmid": "" }, { "name": "poly(A)+ mRNA export from nucleus", "id": "GO:0016973", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016973", "evidence": [ { "database": "UniProtKB", "id": "A0A480SMR3", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A480SMR3", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3" } ], "pmid": "" }, { "name": "transcription export complex", "id": "GO:0000346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000346", "evidence": [ { "database": "UniProtKB", "id": "A0A480SMR3", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480SMR3", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A480SMR3", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480SMR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480SMR3" }, { "id": "PS50800", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50800" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAP", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 42, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 160, "end_pos": 162 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480SGG9-1", "uniprot_ac": "A0A480SGG9", "uniprot_id": "A0A480SGG9_PIG", "mass": { "chemical_mass": 50711.0, "monoisotopic_mass": 50711.0 }, "refseq": {}, "gene_names": [ { "name": "SLC49A3", "type": "recommended", "evidence": [ { "id": "A0A480SGG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480SGG9" } ] } ], "protein_names": [ { "name": "Solute carrier family 49 member 3", "type": "synonym", "evidence": [ { "id": "A0A480SGG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480SGG9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480SGG9", "url": "https://www.uniprot.org/uniprotkb/A0A480SGG9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC49A3", "url": "https://www.uniprot.org/uniprotkb/A0A480SGG9", "locus": { "chromosome": "8", "start_pos": 120102, "end_pos": 128425, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026084", "url": "https://www.ensembl.org/id/ENSSSCG00000026084" } ] } } ], "crossref": [ { "id": "ENSSSCG00000026084", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026084", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17399", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17399", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "STICWTG", "url": "https://omabrowser.org/oma/group/STICWTG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10924", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10924", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10924:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10924:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A480SGG9", "url": "https://www.uniprot.org/uniprotkb/A0A480SGG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480SGG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SGG9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RCQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RCQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGLAGDNPGAAGPLTLSALRGYRAYARRWVFLLVISLLSCSNAMLWLSFAPVADTIAQHFGLSTEQINWLSLVYLVASIPFGVVAVWVLDSVGLRWAILLSAWLNFAGSVIRSLPCMLTSIHDPFAFLLGGQSLCALAQTLVIFSPAKLAALWFPEHQRATANMIGTMSNPLGLLVANLLSPALVKKEEDIPVMLGIYTIPAGLAFLLATACLWESAPPTPPSAGAAHSTSEKFLDGLKLLARNKAYIILAVCFGGGIGIFSSFSALLEQVLCVNGYSDEFAGLCGALFIVFGVLGALALGLYVDRTKHFTGAIKIGLCLTSLVCVAFALVSQLQGQTVALAAICSLFGFFGFAVAPVAMELAVECSFPVGEGAAAGLLFVLGQAEGVLIMMLLAALTVRRAEPSFSTCQDGQDPLDWKVSMLLMAGLCVLFSCLMVLFFHTPYRRLQAEADANPSIQEDTCPATSDPSDHAPHPAATL", "length": 480, "header": "tr|A0A480SGG9-1|A0A480SGG9_PIG Isoform 1 of Solute carrier family 49 member 3 OS=Sus scrofa OX=9823 GN=SLC49A3 PE=4 SV=1 CANONICAL=A0A480SGG9-1" }, "isoforms": [ { "isoform_ac": "A0A480SGG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SGG9/entry#A0A480SGG9-1", "sequence": { "sequence": "MAGLAGDNPGAAGPLTLSALRGYRAYARRWVFLLVISLLSCSNAMLWLSFAPVADTIAQHFGLSTEQINWLSLVYLVASIPFGVVAVWVLDSVGLRWAILLSAWLNFAGSVIRSLPCMLTSIHDPFAFLLGGQSLCALAQTLVIFSPAKLAALWFPEHQRATANMIGTMSNPLGLLVANLLSPALVKKEEDIPVMLGIYTIPAGLAFLLATACLWESAPPTPPSAGAAHSTSEKFLDGLKLLARNKAYIILAVCFGGGIGIFSSFSALLEQVLCVNGYSDEFAGLCGALFIVFGVLGALALGLYVDRTKHFTGAIKIGLCLTSLVCVAFALVSQLQGQTVALAAICSLFGFFGFAVAPVAMELAVECSFPVGEGAAAGLLFVLGQAEGVLIMMLLAALTVRRAEPSFSTCQDGQDPLDWKVSMLLMAGLCVLFSCLMVLFFHTPYRRLQAEADANPSIQEDTCPATSDPSDHAPHPAATL", "length": 480, "header": "tr|A0A480SGG9-1|A0A480SGG9_PIG Isoform 1 of Solute carrier family 49 member 3 OS=Sus scrofa OX=9823 GN=SLC49A3 PE=4 SV=1 CANONICAL=A0A480SGG9-1" }, "locus": { "chromosome": "8", "start_pos": 128254, "end_pos": 120970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026976.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026976.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026543.4", "url": "https://www.ensembl.org/id/ENSSSCP00000026543.4" } ] } }, { "isoform_ac": "A0A5G2RCQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SGG9/entry#A0A5G2RCQ9-1", "sequence": { "sequence": "MPLPSSTWVSTTGTGCPLECAALPGLPRKLHTHVTGLYRLPCPDPGPLSVLQLRAAPSKPPSRTVPPTQWTPRPLTAPGPSPWRASPAGARCPAGSSQAVSLPPGPRGQWSTGPCPGRTMSPPPVLPSGVTGEHPGPHRTAGPFVSLRPASPAQDGRQLWWLWCLPPGLMPPCIPQLWLSFAPVADTIAQHFGLSTEQINWLSLVYLVASIPFGVVAVWVLDSVGLRWAILLSAWLNFAGSVIRSLPCMLTSIHDPFAFLLGGQSLCALAQTLVIFSPAKLAALWFPEHQRATANMIGTMSNPLGLLVANLLSPALVKKEEDIPVMLGIYTIPAGLAFLLATACLWESAPPTPPSAGAAHSTSEKFLDGLKLLARNKAYIILAVCFGGGIGIFSSFSALLEQVLCVNGYSDEFAGLCGALFIVFGVLGALALGLYVDRTKHFTGAIKIGLCLTSLVCVAFALVSQLQGQTVALAAICSLFGFFGFAVAPVAMELAVECSFPVGEGAAAGLLFVLGQAEGVLIMMLLAALTVRRAEPSFSTCQDGQDPLDWKVSMLLMAGLCVLFSCLMVLFFHTPYRRLQAEADANPSIQEDTCPATSDPSDHAPHPAATL", "length": 611, "header": "tr|A0A5G2RCQ9-1|A0A480SGG9_PIG Computationally mapped isoform of Solute carrier family 49 member 3 OS=Sus scrofa OX=9823 GN=SLC49A3 PE=4 SV=2 CANONICAL=A0A480SGG9-1" }, "locus": { "chromosome": "8", "start_pos": 125771, "end_pos": 120970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068069.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068069.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074211.2", "url": "https://www.ensembl.org/id/ENSSSCP00000074211.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 221, "start_aa": "Thr", "end_pos": 221, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr221", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RCQ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCQ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D3ZU10-1", "protein_name": "Solute carrier family 49 member 3", "gene_name": "Slc49a3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARTMDRLEACNSPGTSGTPGDALPGPRVYARRWVFLLVVSLLSCSNAMLWLTFAPVADTIAQHFSLSMDQINWLSLIYLVLSIPFGMAAIWVLDSVGLRGATILGAWLNFSGSLLRAVPCLAVRIPSPFAFFMSGQSLCALAQTLVISSPAKLAALWFPEHQRATANMIGTMSNPLGILIANVLSPALVKKAEDIPMMLGIYIVPAALACLLATVCLWESVPPTPPSAGAASSTSESFLHGLKLLMKNKAYVILAVCFGGGIGVFSSFSALLEQIFCANGYSNEFSGLCGALFIVFGILGALLLGLYVDRTKHFTEATKIGLCLTSLTFVAFALVSQLQGQTFALAAICSLLGLFGFSVAPVVMELAVECSFPVGEGASAGLIFVLGQAEGVLIMLLLTAVTVRRTGPSFSTCRQGEDPLDWTVSLLLLAGLCTLFTCVLVIFFNTPYRRLEAESGGSSSPMMCAGDPRNESPTQVAPLETPGLTPPDDALQEAPGPASVSKGHSEWTETITRNV", "length": 516 }, "evidence": [ { "id": "A0A480SGG9", "url": "https://omabrowser.org/oma/group/A0A480SGG9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BDD8-1", "protein_name": "Solute carrier family 49 member 3", "gene_name": "SLC49A3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGPAGDWPEAGAATSVRSALGGYRAYARRWVFLLVISLLSCSNATLWLSFAPVADTIARHFLLSTEQINWLSLVYLVVSIPFGMVAIWVLDSVGLRRATTLGAFLNFWGSMIRSMPCMAVDIQDPFVFLLGGQTFCALAQTLVIFSPAKLAALWFPEHQRATANMIGTMSNALGILVANLLSPALVKTEEDIPLMLGTYILPAGLTFLLAIACLWESVPPTPPSVGAAQSTSLSFLAGLKLLTRNKAYMVLAVCFGGGIGIFSNFSALLEQVLCVNGYSSEFAGLCGALFIVFGVLGAVALGLYVDRTKHFTEAIKIGLCLTSLACVAFAVVSQLQGQTIVLAAICSLLGFFGFSVAPVAMELAVECSFPVGEGAAAGLVFVLGQAEGVLIMVLLTSLTVRHAEPSVSTCQDGQGPLDWKVPMLLMAGLCVLFSCLFVLLFHTPYRRLQAEADASPSIQEDERPATAAALGHAPYLAATP", "length": 481 }, "evidence": [ { "id": "A0A480SGG9", "url": "https://omabrowser.org/oma/group/A0A480SGG9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1ND71-1", "protein_name": "Solute carrier family 49 member 3", "gene_name": "MFSD7", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEGGESAGLLAERGPSQLKTYRRRWFLLAVVCLLNCSNAMLWLTFAPVADQTAAYFHISLEMVNWLSIVYLLISIPFGLVATWVLDSVGLRCAVILSAWLNMMGSIIRMFSVLKFMSLGSQNYWYLFVGQCLCALAQPLVIFSPTKLAALWFPDHQRATANMISSMSNPLGILIANLLSPALVPEGRHIPLMLGVYAIPALTACVLATVGIREKVPPTPPSASATNSTSQPFFMGLKMLLRNKPYIILALCFGGGIGMFTCFSALLEQILCEKGYSNVFAGLNGALFTVCGLLGAFLLGLYVDRTRNFIESTKICFCLSALASIVFAVASRFRDQAIALAITSSIFGFFGFAMYPVAMELAVECSYPVGEGTSTGLIFVASQIEGVVFMVLLQALTVRVSKDPSSTCALDQDGALDWTTPVLLMAGLCSAMACFYVIFFHTDYKRLHAETNMVKAEDTGSDDVPEA", "length": 466 }, "evidence": [ { "id": "A0A480SGG9", "url": "https://omabrowser.org/oma/group/A0A480SGG9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6UXD7-1", "protein_name": "Solute carrier family 49 member A3", "gene_name": "SLC49A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGPTEAETGLAEPRALCAQRGHRTYARRWVFLLAISLLNCSNATLWLSFAPVADVIAEDLVLSMEQINWLSLVYLVVSTPFGVAAIWILDSVGLRAATILGAWLNFAGSVLRMVPCMVVGTQNPFAFLMGGQSLCALAQSLVIFSPAKLAALWFPEHQRATANMLATMSNPLGVLVANVLSPVLVKKGEDIPLMLGVYTIPAGVVCLLSTICLWESVPPTPPSAGAASSTSEKFLDGLKLQLMWNKAYVILAVCLGGMIGISASFSALLEQILCASGHSSGFSGLCGALFITFGILGALALGPYVDRTKHFTEATKIGLCLFSLACVPFALVSQLQGQTLALAATCSLLGLFGFSVGPVAMELAVECSFPVGEGAATGMIFVLGQAEGILIMLAMTALTVRRSEPSLSTCQQGEDPLDWTVSLLLMAGLCTFFSCILAVFFHTPYRRLQAESGEPPSTRNAVGGADSGPGVDRGGAGRAGVLGPSTATPECTARGASLEDPRGPGSPHPACHRATPRAQGPAATDAPSRPGRLAGRVQASRFIDPAGSHSSFSSPWVIT", "length": 560 }, "evidence": [ { "id": "A0A480SGG9", "url": "https://omabrowser.org/oma/group/A0A480SGG9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CE47-1", "protein_name": "Solute carrier family 49 member A3", "gene_name": "Slc49a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGTMDRLEDCNSPETSGTAGDALPSPRVYARRWVFLLVVSLLSCSNAMLWLSFAPVADTIAQHFFLSMDQVNWLSLIYFVLSIPFGMAAIWVLDSVGLRGATILGAWLNFSGSVLRAVPCLPVRIPSPFAFFMSGQSLCALAQTLVVSSPAKLAALWFPEHQRATANMISTMSNPLGLLIANVLSPALVKKADDIPMMLGIYIGPAALACLLATVCLWESVPPTPPSTGAANSTSESFLRGLKLLIQNKAYVLLAVCFGGGIGVFSSFSALLEQILCASGYSNEFSGLCGALFIVFGILGALLLGLYVDRTKHFTEATKIGLCLTSMTSVAFALVSQLQGQTLALAAICSLFGLFGFSVAPVVMELAVECSFPVGEGASAGLIFVLGQAEGMLIMLLLTALTVRRTGPSFSTCQQGEDPLDWTVSLLLLAGLCTLFTCVLVIFFNTPYRRLEAESGGSSSPTMCARDPRTVSPTQVPPLETPGLTPPDEALKEAPGPASVSKGHSEWAETMPRDV", "length": 516 }, "evidence": [ { "id": "A0A480SGG9", "url": "https://omabrowser.org/oma/group/A0A480SGG9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A480SGG9", "url": "https://www.uniprot.org/uniprotkb/A0A480SGG9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A480SGG9", "url": "https://www.uniprot.org/uniprotkb/A0A480SGG9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480SGG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480SGG9" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 29, "end_pos": 446, "start_aa": "Arg", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 221 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1SGI1-1", "uniprot_ac": "A0A4X1SGI1", "uniprot_id": "A0A4X1SGI1_PIG", "mass": { "chemical_mass": 20666.0, "monoisotopic_mass": 20666.0 }, "refseq": { "ac": "NP_001026965", "name": "prenylated Rab acceptor protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001026965" }, "gene_names": [ { "name": "RABAC1", "type": "recommended", "evidence": [ { "id": "A0A4X1SGI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGI1" } ] }, { "name": "RABAC1", "type": "synonym", "evidence": [ { "id": "NP_001026965", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001026965" } ] } ], "protein_names": [ { "name": "PRA1 family protein", "type": "recommended", "evidence": [ { "id": "A0A4X1SGI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGI1/entry#names_and_taxonomy" } ] }, { "name": "PRA1 family protein 1", "type": "synonym", "evidence": [ { "id": "NP_001026965", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001026965" } ] }, { "name": "PRA1 family protein 2", "type": "synonym", "evidence": [ { "id": "NP_001026965", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001026965" } ] }, { "name": "prenylated Rab acceptor protein 1", "type": "synonym", "evidence": [ { "id": "NP_001026965", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001026965" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SGI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGI1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RABAC1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGI1", "locus": { "chromosome": "6", "start_pos": 49936372, "end_pos": 49933434, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003046", "url": "https://www.ensembl.org/id/ENSSSCG00000003046" } ] } } ], "crossref": [ { "id": "A0A4X1SGI1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SGI1", "database": "AlphaFoldDB", "categories": [] }, { "id": "595125", "url": "https://www.ncbi.nlm.nih.gov/gene/595125", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:595125", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:595125", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FHQIEPA", "url": "https://omabrowser.org/oma/group/FHQIEPA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SGI1", "url": "https://www.orthodb.org/?gene=A0A4X1SGI1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19317", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19317", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19317:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19317:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03208", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001026965", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001026965", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1SFW3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFW3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SFW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFW3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SGI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SGI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGI1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0VTM1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0VTM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0VTM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0VTM1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAEKDQQKDAEAEGLSATTLLPKLIPSGAGREWLERRRATIRPWGSFVDQRRFSRPRNLGELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLQSKFVLFGREVSPAHQYALAGGVSFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEELQMEPV", "length": 185, "header": "tr|A0A4X1SGI1-1|A0A4X1SGI1_PIG Isoform 1 of PRA1 family protein OS=Sus scrofa OX=9823 GN=RABAC1 PE=3 SV=1 CANONICAL=A0A4X1SGI1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SFW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGI1/entry#A0A4X1SFW3-1", "sequence": { "sequence": "MAAEKDQQKDAEAEGLSATTLLPKLIPSGAGREWLERRRATIRPWGSFVDQRRFSRPRNLGELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLQSKFVLFGATLVVIGSHAAFHQIEAVDGEELQMEPV", "length": 151, "header": "tr|A0A4X1SFW3-1|A0A4X1SFW3_PIG Computationally mapped isoform of PRA1 family protein OS=Sus scrofa OX=9823 GN=RABAC1 PE=3 SV=1 CANONICAL=A0A4X1SGI1-1" }, "locus": { "chromosome": "6", "start_pos": 49936215, "end_pos": 49933588, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082902.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082902.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064640.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064640.1" } ] } }, { "isoform_ac": "A0A4X1SGI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGI1/entry#A0A4X1SGI1-1", "sequence": { "sequence": "MAAEKDQQKDAEAEGLSATTLLPKLIPSGAGREWLERRRATIRPWGSFVDQRRFSRPRNLGELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLQSKFVLFGREVSPAHQYALAGGVSFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEELQMEPV", "length": 185, "header": "tr|A0A4X1SGI1-1|A0A4X1SGI1_PIG Isoform 1 of PRA1 family protein OS=Sus scrofa OX=9823 GN=RABAC1 PE=3 SV=1 CANONICAL=A0A4X1SGI1-1" }, "locus": { "chromosome": "6", "start_pos": 49936215, "end_pos": 49933588, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067025.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067025.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071224.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071224.1" } ] } }, { "isoform_ac": "A0A8D0VTM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGI1/entry#A0A8D0VTM1-1", "sequence": { "sequence": "MAAEKDQQKDAEAEGLSATTLLPKLIPSGAGREWLERRRATIRPWGSFVDQRRFSRPRNLGELCQRLVRNVEYYQSNYVFVFLGLILYCVPRGEPRPSVCPGRGRLLSLLLAGWRGIRRLLGPRSHPRGHRLPRRLPPDRGCGRGGAADGTCVRCLQGHVGLPSQLPRPFSAPSRMALLLPKAPFPLQAQGGTPALEIKLLQL", "length": 203, "header": "tr|A0A8D0VTM1-1|A0A4X1SGI1_PIG Computationally mapped isoform of PRA1 family protein OS=Sus scrofa OX=9823 GN=RABAC1 PE=3 SV=1 CANONICAL=A0A4X1SGI1-1" }, "locus": { "chromosome": "6", "start_pos": 49936367, "end_pos": 49933588, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003383.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003383.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003300.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003300.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0VTM1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0VTM1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:595125", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:595125", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "O35394-1", "protein_name": "Prenylated Rab acceptor protein 1", "gene_name": "Rabac1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAQKDQQKDAEVEGLSATTLLPKLIPSGAGREWLERRRATIRPWGTFVDQQRFSRPRNVGELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLQSKLVLFGREVSPAHQYALAGGVSFPFFWLAGAGSAVFWVLGATLVLIGSHAAFHQIEPADGEELQMEPV", "length": 185 }, "evidence": [ { "id": "A0A4X1SGI1", "url": "https://omabrowser.org/oma/group/A0A4X1SGI1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q1RMH4-1", "protein_name": "Prenylated Rab acceptor protein 1", "gene_name": "RABAC1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAVEKDQQKDAEAEGLSAATLLPKLIPSGAGREWLERRRATIRSWGSFVDQRRFSRPRNLGELCQRLVRNVEYYQSNYVFVFLGLILYCVATSPMLLVALAVFFGACYILYLRTLQSKFVLFGREVSPAHQYALAGGVSFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEELQMEPV", "length": 185 }, "evidence": [ { "id": "A0A4X1SGI1", "url": "https://omabrowser.org/oma/group/A0A4X1SGI1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9UI14-1", "protein_name": "Prenylated Rab acceptor protein 1", "gene_name": "RABAC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAQKDQQKDAEAEGLSGTTLLPKLIPSGAGREWLERRRATIRPWSTFVDQQRFSRPRNLGELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLVLFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEELQMEPV", "length": 185 }, "evidence": [ { "id": "A0A4X1SGI1", "url": "https://omabrowser.org/oma/group/A0A4X1SGI1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z0S9-1", "protein_name": "Prenylated Rab acceptor protein 1", "gene_name": "Rabac1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAQKDQQKDAEGEGLSATTLLPKLIPSGAGREWLERRRATIRPWGTFVDQQRFSRPRNVGELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLQSKLVLFGREVSPAHQYALAGGVSFPFFWLAGAGSAVFWVLGATLVLIGSHAAFHQMEPADGEELQMEPV", "length": 185 }, "evidence": [ { "id": "A0A4X1SGI1", "url": "https://omabrowser.org/oma/group/A0A4X1SGI1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SGI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGI1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SGI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGI1" } ], "pmid": "" }, { "name": "synaptic vesicle", "id": "GO:0008021", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008021", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SGI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGI1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SGI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SGI1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1SJP0-1", "uniprot_ac": "A0A4X1SJP0", "uniprot_id": "A0A4X1SJP0_PIG", "mass": { "chemical_mass": 131565.0, "monoisotopic_mass": 131565.0 }, "refseq": { "ac": "XP_020920985", "name": "fibronectin type-III domain-containing protein 3A isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920985" }, "gene_names": [ { "name": "FNDC3A", "type": "recommended", "evidence": [ { "id": "A0A4X1SJP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJP0" } ] }, { "name": "FNDC3A", "type": "synonym", "evidence": [ { "id": "XP_020920985", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920985" } ] } ], "protein_names": [ { "name": "Fibronectin type-III domain-containing protein 3A", "type": "recommended", "evidence": [ { "id": "A0A4X1SJP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJP0/entry#names_and_taxonomy" } ] }, { "name": "fibronectin type-III domain-containing protein 3A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020920985", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920985" } ] } ], "function": [ { "annotation": "Mediates spermatid-Sertoli adhesion during spermatogenesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SJP0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJP0#function" }, { "database": "UniProtKB", "id": "ARBA00056145", "url": "https://www.uniprot.org/uniprotkb/ARBA00056145#function" }, { "database": "UniProtKB", "id": "A0A4X1SJR5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJR5#function" }, { "database": "UniProtKB", "id": "A0A4X1SKZ6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SKZ6#function" }, { "database": "UniProtKB", "id": "A0A8D1YFP2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1YFP2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SJP0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJP0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FNDC3A", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJP0", "locus": { "chromosome": "11", "start_pos": 18564280, "end_pos": 18757869, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022159", "url": "https://www.ensembl.org/id/ENSSSCG00000022159" } ] } } ], "crossref": [ { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100620938", "url": "https://www.ncbi.nlm.nih.gov/gene/100620938", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050617", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050617", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GETEAMC", "url": "https://omabrowser.org/oma/group/GETEAMC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24099", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24099", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24099:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24099:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020920985", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920985", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1SJP0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SJP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJP0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SJR5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SJR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJR5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SKZ6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SKZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SKZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SKZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1YFP2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1YFP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1YFP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1YFP2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEHPPLLDTTQILSSDISLLSAPIVSADGTQQVILVQVNPGEAFTIRREDGQFQCITGPAQVPMMSPNGSVPPIYVPPGYAPQVIEDNGVRRVVVVPQAPEFHPGGHTVIHRSPHPPLPGFIPVPTMMPPPPRHMYSPVTGAGDMATQYMPQYQSSQVYGDVDAHSTHGRSNFRDERSSKTYERLQKKLKDRQGTQKDKMSSPPSSPQKCPSPVNEHNGLIKGQNASGVNTGSAKNKSGKGKGVAQIDTEIEEKDEETKAFEVHLSTILKPVASDIQARTVVLTWSPPSSLLNGETDERTTVPELYGYEILISSTGKDGKYKSVYAGEETSVTLNDLKPATDYHAKVQAGYNSIKGTPSEAETFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQSFILEWDEGKGNGEFCQCYMGLQKQFKITKLSPAMGCKFRLSAKNDYGTSGFSEEVLYYTSGCAPSMPASPVLTKAGVTWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDKPGVPVKPSVKGKIHSHSFKITWDPPKDNGGAAITKYVVEMAEGSNGNKWDMIYSGATREHLCDRLNPGSFYRFRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYGVEMSPVERDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGPPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYELKGLSPATTYYCRVQALSTVGAGPFSEVVACVTPPSVPAIVTCLQEISDDDIENPSYSPSTCLAISWGKPCDHGSEILAYSIDFGDKQPLTVGKVTSYIIDNLQPDTTYRIRIQALNGLGAGPFSHMIKLKTKPLPPDPPRLECVAFSHQNLKLKWGEGTPKTLSTDSVQYHLQMEDKNGRFVSLYRGPCHTYKVQRLNESTSYKFCIQACNEAGEGPLSQEYIFTTPKSVPAALKAPKIEKVNDHTCEITWECLQPMKGDPVIYSLQVMVGKDSEFKQIYKGPDSAFRYSSLQLNCEYRFRVCAIRQCQDPVGHQDLVGPYSTTVLFISQRTEPPASTSRDTVESTRTRRALSDEQCAAVILVLFAFFSILIAFIIQYFVIK", "length": 1199, "header": "tr|A0A4X1SJP0-1|A0A4X1SJP0_PIG Isoform 1 of Fibronectin type-III domain-containing protein 3A OS=Sus scrofa OX=9823 GN=FNDC3A PE=1 SV=1 CANONICAL=A0A4X1SJP0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SJP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJP0/entry#A0A4X1SJP0-1", "sequence": { "sequence": "MAEHPPLLDTTQILSSDISLLSAPIVSADGTQQVILVQVNPGEAFTIRREDGQFQCITGPAQVPMMSPNGSVPPIYVPPGYAPQVIEDNGVRRVVVVPQAPEFHPGGHTVIHRSPHPPLPGFIPVPTMMPPPPRHMYSPVTGAGDMATQYMPQYQSSQVYGDVDAHSTHGRSNFRDERSSKTYERLQKKLKDRQGTQKDKMSSPPSSPQKCPSPVNEHNGLIKGQNASGVNTGSAKNKSGKGKGVAQIDTEIEEKDEETKAFEVHLSTILKPVASDIQARTVVLTWSPPSSLLNGETDERTTVPELYGYEILISSTGKDGKYKSVYAGEETSVTLNDLKPATDYHAKVQAGYNSIKGTPSEAETFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQSFILEWDEGKGNGEFCQCYMGLQKQFKITKLSPAMGCKFRLSAKNDYGTSGFSEEVLYYTSGCAPSMPASPVLTKAGVTWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDKPGVPVKPSVKGKIHSHSFKITWDPPKDNGGAAITKYVVEMAEGSNGNKWDMIYSGATREHLCDRLNPGSFYRFRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYGVEMSPVERDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGPPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYELKGLSPATTYYCRVQALSTVGAGPFSEVVACVTPPSVPAIVTCLQEISDDDIENPSYSPSTCLAISWGKPCDHGSEILAYSIDFGDKQPLTVGKVTSYIIDNLQPDTTYRIRIQALNGLGAGPFSHMIKLKTKPLPPDPPRLECVAFSHQNLKLKWGEGTPKTLSTDSVQYHLQMEDKNGRFVSLYRGPCHTYKVQRLNESTSYKFCIQACNEAGEGPLSQEYIFTTPKSVPAALKAPKIEKVNDHTCEITWECLQPMKGDPVIYSLQVMVGKDSEFKQIYKGPDSAFRYSSLQLNCEYRFRVCAIRQCQDPVGHQDLVGPYSTTVLFISQRTEPPASTSRDTVESTRTRRALSDEQCAAVILVLFAFFSILIAFIIQYFVIK", "length": 1199, "header": "tr|A0A4X1SJP0-1|A0A4X1SJP0_PIG Isoform 1 of Fibronectin type-III domain-containing protein 3A OS=Sus scrofa OX=9823 GN=FNDC3A PE=1 SV=1 CANONICAL=A0A4X1SJP0-1" }, "locus": { "chromosome": "11", "start_pos": 18715105, "end_pos": 18566497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056650.2", "url": "https://www.ensembl.org/id/ENSSSCT00000056650.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036838.1", "url": "https://www.ensembl.org/id/ENSSSCP00000036838.1" } ] } }, { "isoform_ac": "A0A4X1SJR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJP0/entry#A0A4X1SJR5-1", "sequence": { "sequence": "MSGPAQVPMMSPNGSVPPIYVPPGYAPQVIEDNGVRRVVVVPQAPEFHPGGHTVIHRSPHPPLPGFIPVPTMMPPPPRHMYSPVTGAGDMATQYMPQYQSSQVYGDVDAHSTHGRSNFRDERSSKTYERLQKKLKDRQGTQKDKMSSPPSSPQKCPSPVNEHNGLIKGQNASGVNTGSAKNKSGKGKGVAQIDTEIEEKDEETKAFEVHLSTILKPVASDIQARTVVLTWSPPSSLLNGETDERTTVPELYGYEILISSTGKDGKYKSVYAGEETSVTLNDLKPATDYHAKVQAGYNSIKGTPSEAETFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQSFILEWDEGKGNGEFCQCYMGLQKQFKITKLSPAMGCKFRLSAKNDYGTSGFSEEVLYYTSGCAPSMPASPVLTKAGVTWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDKPGVPVKPSVKGKIHSHSFKITWDPPKDNGGAAITKYVVEMAEGSNGNKWDMIYSGATREHLCDRLNPGSFYRFRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYGVEMSPVERDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGPPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYELKGLSPATTYYCRVQALSTVGAGPFSEVVACVTPPSVPAIVTCLQEISDDDIENPSYSPSTCLAISWGKPCDHGSEILAYSIDFGDKQPLTVGKVTSYIIDNLQPDTTYRIRIQALNGLGAGPFSHMIKLKTKPLPPDPPRLECVAFSHQNLKLKWGEGTPKTLSTDSVQYHLQMEDKNGRFVSLYRGPCHTYKVQRLNESTSYKFCIQACNEAGEGPLSQEYIFTTPKSVPAALKAPKIEKVNDHTCEITWECLQPMKGDPVIYSLQVMVGKDSEFKQIYKGPDSAFRYSSLQLNCEYRFRVCAIRQCQDPVGHQDLVGPYSTTVLFISQRTEPPASTSRDTVESTRTRRALSDEQCAAVILVLFAFFSILIAFIIQYFVIK", "length": 1143, "header": "tr|A0A4X1SJR5-1|A0A4X1SJR5_PIG Computationally mapped isoform of Fibronectin type-III domain-containing protein 3A OS=Sus scrofa OX=9823 GN=FNDC3A PE=1 SV=1 CANONICAL=A0A4X1SJP0-1" }, "locus": { "chromosome": "11", "start_pos": 18633084, "end_pos": 18566497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026092.3", "url": "https://www.ensembl.org/id/ENSSSCT00000026092.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027551.2", "url": "https://www.ensembl.org/id/ENSSSCP00000027551.2" } ] } }, { "isoform_ac": "A0A4X1SKZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJP0/entry#A0A4X1SKZ6-1", "sequence": { "sequence": "MKNSKCPAQVPMMSPNGSVPPIYVPPGYAPQVIEDNGVRRVVVVPQAPEFHPGGHTVIHRSPHPPLPGFIPVPTMMPPPPRHMYSPVTGAGDMATQYMPQYQSSQVYGDVDAHSTHGRSNFRDERSSKTYERLQKKLKDRQGTQKDKMSSPPSSPQKCPSPVNEHNGLIKGQNASGVNTGSAKNKSGKGKGVAQIDTEIEEKDEETKAFEVHLSTILKPVASDIQARTVVLTWSPPSSLLNGETDERTTVPELYGYEILISSTGKDGKYKSVYAGEETSVTLNDLKPATDYHAKVQAGYNSIKGTPSEAETFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQSFILEWDEGKGNGEFCQCYMGLQKQFKITKLSPAMGCKFRLSAKNDYGTSGFSEEVLYYTSGCAPSMPASPVLTKAGVTWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDKPGVPVKPSVKGKIHSHSFKITWDPPKDNGGAAITKYVVEMAEGSNGNKWDMIYSGATREHLCDRLNPGSFYRFRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYGVEMSPVERDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGPPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYELKGLSPATTYYCRVQALSTVGAGPFSEVVACVTPPSVPAIVTCLQEISDDDIENPSYSPSTCLAISWGKPCDHGSEILAYSIDFGDKQPLTVGKVTSYIIDNLQPDTTYRIRIQALNGLGAGPFSHMIKLKTKPLPPDPPRLECVAFSHQNLKLKWGEGTPKTLSTDSVQYHLQMEDKNGRFVSLYRGPCHTYKVQRLNESTSYKFCIQACNEAGEGPLSQEYIFTTPKSVPAALKAPKIEKVNDHTCEITWECLQPMKGDPVIYSLQVMVGKDSEFKQIYKGPDSAFRYSSLQLNCEYRFRVCAIRQCQDPVGHQDLVGPYSTTVLFISQRTEPPASTSRDTVESTRTRRALSDEQCAAVILVLFAFFSILIAFIIQYFVIK", "length": 1146, "header": "tr|A0A4X1SKZ6-1|A0A4X1SKZ6_PIG Computationally mapped isoform of Fibronectin type-III domain-containing protein 3A OS=Sus scrofa OX=9823 GN=FNDC3A PE=1 SV=1 CANONICAL=A0A4X1SJP0-1" }, "locus": { "chromosome": "11", "start_pos": 18628435, "end_pos": 18566497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054108.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054108.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037898.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037898.2" } ] } }, { "isoform_ac": "A0A8D1YFP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJP0/entry#A0A8D1YFP2-1", "sequence": { "sequence": "MAEHPPLLDTTQILSSDISLLSAPIVSADGTQQNKKNINKMKKHRNHSQLKEQNSTEGANNKTDLCSLTDTEFKKEVILVQVNPGEAFTIRREDGQFQCITGPAQVPMMSPNGSVPPIYVPPGYAPQVIEDNGVRRVVVVPQAPEFHPGGHTVIHRSPHPPLPGFIPVPTMMPPPPRHMYSPVTGAGDMATQYMPQYQSSQVYGDVDAHSTHGRSNFRDERSSKTYERLQKKLKDRQGTQKDKMSSPPSSPQKCPSPVNEHNGLIKGQNASGVNTGSAKNKSGKGKGVAQIDTEIEEKDEETKAFEVHLSTILKPVASDIQARTVVLTWSPPSSLLNGETDERTTVPELYGYEILISSTGKDGKYKSVYAGEETSVTLNDLKPATDYHAKVQAGYNSIKGTPSEAETFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQSFILEWDEGKGNGEFCQCYMGLQKQFKITKLSPAMGCKFRLSAKNDYGTSGFSEEVLYYTSGCAPSMPASPVLTKAGVTWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDKPGVPVKPSVKGKIHSHSFKITWDPPKDNGGAAITKYVVEMAEGSNGNKWDMIYSGATREHLCDRLNPGSFYRFRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYGVEMSPVERDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGPPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYELKGLSPATTYYCRVQALSTVGAGPFSEVVACVTPPSVPAIVTCLQEISDDDIENPSYSPSTCLAISWGKPCDHGSEILAYSIDFGDKQPLTVGKVTSYIIDNLQPDTTYRIRIQALNGLGAGPFSHMIKLKTKPLPPDPPRLECVAFSHQNLKLKWGEGTPKTLSTDSVQYHLQMEDKNGRFVSLYRGPCHTYKVQRLNESTSYKFCIQACNEAGEGPLSQEYIFTTPKSVPAALKAPKIEKVNDHTCEITWECLQPMKGDPVIYSLQVMVGKDSEFKQIYKGPDSAFRYSSLQLNCEYRFRVCAIRQCQDPVGHQDLVGPYSTTVLFISQRTEPPASTSRDTVESTRTRRALSDEQCAAVILVLFAFFSILIAFIIQYFVIK", "length": 1242, "header": "tr|A0A8D1YFP2-1|A0A4X1SJP0_PIG Computationally mapped isoform of Fibronectin type-III domain-containing protein 3A OS=Sus scrofa OX=9823 GN=FNDC3A PE=1 SV=1 CANONICAL=A0A4X1SJP0-1" }, "locus": { "chromosome": "11", "start_pos": 18715105, "end_pos": 18566497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040444.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040444.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033912.2", "url": "https://www.ensembl.org/id/ENSSSCP00000033912.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 494, "start_aa": "Thr", "end_pos": 494, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr494", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1YFP2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1YFP2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AXU9-1", "protein_name": "Fibronectin type-III domain-containing protein 3A", "gene_name": "Fndc3a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVCFCHSWRAFRCIDALLMMAEHPPLLDTAQILSSDISLLSAPIVSADGTQQVILVQVNPGEAFTIRREDGQFQCITGPAQVPMMSPNGSVPPIYVPPGYAPQVIEDNGVRRVVVVPQSPEFHPGGHTVIHRSPHPPLPGFIPVPTMMPPPPRHMYSPVTGAGDMATQYMPQYQSSQVYADVDAHSTHGRSNFRDERSTKTYERLQKKLKDRQGTQKDKMSSPPPSPQKCPSPISEHNGLIKGQNTSGVNTGSARNRSGRGRGCTQVDQEIEEKDEETKAFEAFLSNIVRPVASDIQARTVLLTWSPPSSFVNGEVTETTVPEFFNYEILVSSTGKEGKYRSVYVGEETSVTLNDLKPATDYHAKVQAESNSIKGIPSEAESFTTLSCEPDTPNAPRIANRTKNSLTLQWKAPSDNGSKIQSFILEWDEGKGSGEFCQCYMGSQKQFKITKLSPAMGCKFRLSAKNDYGVSDFSEEVLYYTSGCAPSVPASPVLTKAGVTWLSLQWTKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSSPSEVVEFSTCPDKPGVPAKPSVKGKVHSHGFKITWDPPRDNGGAPINKYVVEMAEGSNGSKWDMIYSGATREHLCDRLTPGCYYRLRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPQVDGGSPISCYAVEMTPADKDEPRDVYQGSEVECTVSSLLPGKTYSFRLRAANRIGFGPFSEKYDITTAPGPPDQCRPPQVTCRSATCAQVNWEIPLSNGTDITEYRLEWGGVEGSMQICYCGPGLSCELKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSVPAIVTCLQEIRDDDIEYPHYSPSTCLAISWEEPYDHGSEILAYSIDLGDKQPLTVGKVTSYVINSLQPDTTYRIRIQALNSLGAGPFSHTIKLKTKPLPPDPPRLECVAFNHQNLKLKWGEGTPKTLATDAVQYHLQMEDKNGRFVSLYRGPCHTYKVQRLSESTSYKFCIQACNEAGEGPLSQEYVFTTPKSVPAALKAPKIEKINDHICEITWEYLQPMKGDPVIYNLQVMVGKDSEFKQIYRGPDTSFRYSSLQLNCEYRFRVCAIRQCQDPAGHQDLVGPYSTTVFFISQRTEPLASSNRDTVDSARTRRTLSDEQCAAVILVLFAFFSILIAFIIQYFVIK", "length": 1218 }, "evidence": [ { "id": "A0A4X1SJP0", "url": "https://omabrowser.org/oma/group/A0A4X1SJP0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0XIA4-1", "protein_name": "Fibronectin type-III domain-containing protein 3A", "gene_name": "FNDC3A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MMAEHPPLLDTSSIISSEIPLLTSPIVSGDGAQQVILVQVNPGEAFTIRREDGQFQCITGPAQVPMMSPNGSVPTIYVPPGYAPQVIEDNGVRRVVVVPQAPEFHPGGHAVIHRPPHPPLPGFLPLPAMIPPPPRHIYSPVTGAGDMATQYIPQYHTSQMYGDLDTLPAHGRANFRDERSSKTYERLQKKLKDRHGTQKDKLNSPPSSPQKCPSPTSEPNGLTKGQDTAGISTGSTKSKSVGKGKSNSQTDVEIEEKDEETKALEALLSNIAKPVVSDIQARTALLMWSPPSTDVGEDTDKSNIPGVYTYEVMISNTGKDGKYKTVYIGEENKVTVNDLRPATDYHAKVQVECNCVKGSPSEVESFTTMSCEPDAPNLPRITNRTKNSLTLQWKASCDNGSKIHSYLLEWDEGKGNGEFCQCYYGQQKQYRITKLSPAMGYTFRLAAKNDMGMSGFSEEVLYHTSGTAPTTPASPLLINAGVTWLSLQWTKPSGTPSDEGISYILEMEDENSGYGFKPKYDGDDLTYTVKNLRRSTKYKFRVIAYNSEGKSSPSETVDYTTCPDKPGAPSKPSVKGKIHAQSFKIIWDPPKDNGGAAINTYVVEISEGSNGNKWDTIYSGAAREHLCDRLNPGCSYRLRVYCIGEGGQSMASDSLLVQTPAVVPGPCQPPRLQGRPRAREIQLRWGPPQVDGGSPITCYGLEMFQTETDEHREVYQGSDVECTVGSLLPGRMYNFRLRAANKAGFGPYSEKCEITTAPGPPDQCKPPQVTCRSAACAQVSWEVPVSNGADVTEYRLEWGGMEGCMQISYCGPGLNCEMKGLLPATIYYCRVQAVNVAGAGPFSEVVACMTPASVPAVVTCLRGLSEDEVESPHYYPSTCLALSWEKPCDHGSEITGYSIDFGDKQPITVGKVLSYFIDGLQPDTTYRIRIQALNSLGAGPFSHTIKLKTKPLPPDPPRLECVAYSSQTLKLKWGEGTAKALTDSIQYHLQMEDKNGRFVSLYRGPCHTYKVQRLSESTSYKFCIQACNEAGEGPLSQEYVFTTPKSVPAALKAPRIERINDHTCEITWEVLQPMKGDPVIYCLQVMVGKDSEFKQIYKGPDWSFRYTGLQLNCEYRFRACAIRQCQETSGHQDLIGPYSSPVLFISQRTEPPTSTNKDTVQTTRTQWSQSDQVCAAVILALFAIFSILIAVIIQYFVIK", "length": 1199 }, "evidence": [ { "id": "A0A4X1SJP0", "url": "https://omabrowser.org/oma/group/A0A4X1SJP0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8BX90-1", "protein_name": "Fibronectin type-III domain-containing protein 3A", "gene_name": "Fndc3a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEHPPLLDTAQILSSDISLLSAPIVSADGTQQVILVQVNPGEAFTIRREDGQFQCITGPAQVPMMSPNGSVPPIYVPPGYAPQVIEDNGVRRVVVVPQSPEFHPGGHTVIHRSPHPPLPGFIPVPTMMPPPPRHMYSPVTGAGDMATQYMPQYQSSQVYADVDAHSTHGRSNFRDERSSKTYERLQKKLKDRQGTQKDKMSSPPPSPQKCPSPISEHNGLIKGQNASGGNTGSARNRSGRGRSCTQVDPEMEEKDEETKAFEAFLSNIVKPVASDIQARTVLLTWSPPSSFINGEVNETAVPELFNYEVLVSSTGKEGKYRSVYIGEETSVTLNDLKPATDYHAKVQAESNSIKGIPSEAESFTTLSCEPDPPNAPRIANRTKNSLTLQWKAPSDNGSKIQSFILEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSAKNDYGVSDFSEEVLYYTSGCAPSVPASPVLTKAGVTWLSLQWTKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFSTCPDKPGVPVKPSVKGKIHSHGFKITWDPPKDNGGAPINKYVVEMAEGSNGNKWDMIYSGTTREHLCDRLTPGCYYRLRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPQVDGGSPISCYAVEMTPADKDEPRDVYQGSEVECTVGSLLPGKTYSFRLRAANRIGFGPFSEKYDITTAPGPPDQCRPPQVTCRSATCAQVNWEIPLSNGTDVTEYRLEWGGVEGSMQMCYCGPGLSCELKGLSPATTYYCRVQAMSVVGAGPFSEVVACVTPPSVPAIVTCLQEISDDDIEYPHYSPSTCLAISWKEPYDHGSEILAYSIDLGDKQPLTVGKMTSYIIDSLQPDTTYRIRIQALNSLGAGPFSHTIKLKTKPLPPDPPRLECVAFNHQNLKLKWGEGTPKTLSTDAVQYHLQMEDRNGRFVSLYRGPCHTYKVQRLSESTSYKFCIQACNEAGEGPLSQEYVFTTPKSLPAALKAPKIEKINDHICEITWEYLQPMKGDPVIYNLQVMVGKDSEFKQIYKGPDTSFRYSSLQLNCEYRFRVCAIRQCQDPTGHQDLVGPYSTTVFFISQRTEPPASSNKDSVDSARTRRTLSDEQCAAVILVVFAFFSILIAFIIQYFVIK", "length": 1198 }, "evidence": [ { "id": "A0A4X1SJP0", "url": "https://omabrowser.org/oma/group/A0A4X1SJP0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y2H6-1", "protein_name": "Fibronectin type-III domain-containing protein 3A", "gene_name": "FNDC3A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEHPPLLDTTQILSSDISLLSAPIVSADGTQQVILVQVNPGEAFTIRREDGQFQCITGPAQVPMMSPNGSVPPIYVPPGYAPQVIEDNGVRRVVVVPQAPEFHPGSHTVLHRSPHPPLPGFIPVPTMMPPPPRHMYSPVTGAGDMTTQYMPQYQSSQVYGDVDAHSTHGRSNFRDERSSKTYERLQKKLKDRQGTQKDKMSSPPSSPQKCPSPINEHNGLIKGQIAGGINTGSAKIKSGKGKGGTQVDTEIEEKDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCAPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGPPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSVPGIVTCLQEISDDEIENPHYSPSTCLAISWEKPCDHGSEILAYSIDFGDKQSLTVGKVTSYIINNLQPDTTYRIRIQALNSLGAGPFSHMIKLKTKPLPPDPPRLECVAFSHQNLKLKWGEGTPKTLSTDSIQYHLQMEDKNGRFVSLYRGPCHTYKVQRLNESTSYKFCIQACNEAGEGPLSQEYIFTTPKSVPAALKAPKIEKVNDHICEITWECLQPMKGDPVIYSLQVMLGKDSEFKQIYKGPDSSFRYSSLQLNCEYRFRVCAIRQCQDSLGHQDLVGPYSTTVLFISQRTEPPASTNRDTVESTRTRRALSDEQCAAVILVLFAFFSILIAFIIQYFVIK", "length": 1198 }, "evidence": [ { "id": "A0A4X1SJP0", "url": "https://omabrowser.org/oma/group/A0A4X1SJP0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SJP0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJP0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SJP0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJP0" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SJP0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJP0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spermatid development", "id": "GO:0007286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007286", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SJP0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJP0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1015, "end_pos": 1017, "annotation": "n_glycosylation_sequon" }, { "start_pos": 226, "end_pos": 228, "annotation": "n_glycosylation_sequon" }, { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 382, "end_pos": 384, "annotation": "n_glycosylation_sequon" }, { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" }, { "start_pos": 69, "end_pos": 71, "annotation": "n_glycosylation_sequon" }, { "start_pos": 786, "end_pos": 788, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": 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"https://www.ensembl.org/id/ENSSSCG00000015410" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015410", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015410", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515229", "url": "https://www.ncbi.nlm.nih.gov/gene/100515229", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPTFCRL", "url": "https://omabrowser.org/oma/group/IPTFCRL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SFB9", "url": "https://www.orthodb.org/?gene=A0A4X1SFB9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12680", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12680", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12680:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12680:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12129", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12129", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020958200", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020958200", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZJB2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZJB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZJB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZJB2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZW03", "url": "https://www.uniprot.org/uniprotkb/A0A286ZW03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZW03-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZW03-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SEK5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SEK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SEK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SEK5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SEV7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SEV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SEV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SEV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SFB9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SFB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SFD2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SFD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFD2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASKVTDAIVWYQKKIGAYDQQIWEKSVEQREIKFIKLGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFFWLLVLYLLQVAAIVLFCSASSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGTSTSYGVGAVFRDLWRAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSSEDGVQSHEPQCEILRPEEATWNTGTLRNIPSKDTQRTMTNVSDEVSSEEGPETGYPLRRHADRTSESILRNRKSHHYKKHYPNEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECRSSCTSETDVENPQINPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNSHIPGIGYQIFGNAISLILGLTPFVFRLSQATDLDQLTAHSASELYMIAFGSNEDVIVLSMVMISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 751, "header": "tr|A0A4X1SFB9-1|A0A4X1SFB9_PIG Isoform 1 of Putative homeodomain transcription factor 2 OS=Sus scrofa OX=9823 GN=PHTF2 PE=4 SV=1 CANONICAL=A0A4X1SFB9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZJB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB9/entry#A0A286ZJB2-1", "sequence": { "sequence": "MASKVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFFWLLVLYLLQGIVKLLEQNITDWRLNRNLLSDILEAGDQRSRCHQVAAIVLFCSASSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGTSTSYGVGAVFRDLWRAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSSEDGVQSHEPQCEILRPEEATWNTGTLRNIPSKDTQRTMTNVSDEVSSEEGPETGYPLRRHADRTSESILRNRKSHHYKKHYPNEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECRSSCTSETDVENPQINPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNSHIPGIGYQIFGNAISLILGLTPFVFRLSQATDLDQLTAHSASELYMIAFGSNEDVIVLSMVMISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 782, "header": "tr|A0A286ZJB2-1|A0A4X1SFB9_PIG Computationally mapped isoform of Putative homeodomain transcription factor 2 OS=Sus scrofa OX=9823 GN=PHTF2 PE=4 SV=3 CANONICAL=A0A4X1SFB9-1" }, "locus": { "chromosome": "9", "start_pos": 102319526, "end_pos": 102223717, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052957.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052957.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031613.3", "url": "https://www.ensembl.org/id/ENSSSCP00000031613.3" } ] } }, { "isoform_ac": "A0A286ZW03-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB9/entry#A0A286ZW03-1", "sequence": { "sequence": "MASKVTDAIVWYQKKIGAYDQQIWEKSVEQREIKFIKLGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFFWLLVLYLLQVAAIVLFCSASSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGTSTSYGVGAVFRDLWRAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSSEDGVQSHEPQCEILRPEEATWNTGTLRNIPSKDTQRTMTNVSDEVSSEEGPETGYPLRRHADRTSESILRNRKSHHYKKHYPNESHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNSHIPGIGYQIFGNAISLILGLTPFVFRLSQATDLDQLTAHSASELYMIAFGSNEDVIVLSMVMISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 678, "header": "tr|A0A286ZW03-1|A0A4X1SFB9_PIG Computationally mapped isoform of Putative homeodomain transcription factor 2 OS=Sus scrofa OX=9823 GN=PHTF2 PE=4 SV=3 CANONICAL=A0A4X1SFB9-1" }, "locus": { "chromosome": "9", "start_pos": 102319526, "end_pos": 102223717, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042272.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042272.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035673.3", "url": "https://www.ensembl.org/id/ENSSSCP00000035673.3" } ] } }, { "isoform_ac": "A0A4X1SEK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB9/entry#A0A4X1SEK5-1", "sequence": { "sequence": "MASKVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFFWLLVLYLLQVAAIVLFCSASSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGTSTSYGVGAVFRDLWRAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSSEDGVQSHEPQCEILRPEEATWNTGTLRNIPSKDTQRTMTNVSDEVSSEEGPETGYPLRRHADRTSESILRNRKSHHYKKHYPNEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECRSSCTSETDVENPQINPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNSHIPGIGYQIFGNAISLILGLTPFVFRLSQATDLDQLTAHSASELYMIAFGSNEDVIVLSMVMISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 695, "header": "tr|A0A4X1SEK5-1|A0A4X1SEK5_PIG Computationally mapped isoform of Putative homeodomain transcription factor 2 OS=Sus scrofa OX=9823 GN=PHTF2 PE=4 SV=1 CANONICAL=A0A4X1SFB9-1" }, "locus": { "chromosome": "9", "start_pos": 102319526, "end_pos": 102223717, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066663.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066663.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069933.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069933.1" } ] } }, { "isoform_ac": "A0A4X1SEV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB9/entry#A0A4X1SEV7-1", "sequence": { "sequence": "MASKVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFFWLLVLYLLQVAAIVLFCSASSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGTSTSYGVGAVFRDLWRAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSSEDGVQSHEPQCEILRPEEATWNTGTLRNIPSKDTQRTMTNVSDEVSSEEGPETGYPLRRHADRTSESILRNRKSHHYKKHYPNEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECRSSCTSETDVENPQINPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNSHIPGIGYQIFGNAISLILGLTPFVFRLSQATDLDQLTAHSASELYMIAFGSNEDVIVLSMVMISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 715, "header": "tr|A0A4X1SEV7-1|A0A4X1SEV7_PIG Computationally mapped isoform of Putative homeodomain transcription factor 2 OS=Sus scrofa OX=9823 GN=PHTF2 PE=4 SV=1 CANONICAL=A0A4X1SFB9-1" }, "locus": { "chromosome": "9", "start_pos": 102319526, "end_pos": 102223717, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016785.3", "url": "https://www.ensembl.org/id/ENSSSCT00000016785.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016337.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016337.3" } ] } }, { "isoform_ac": "A0A4X1SFB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB9/entry#A0A4X1SFB9-1", "sequence": { "sequence": "MASKVTDAIVWYQKKIGAYDQQIWEKSVEQREIKFIKLGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFFWLLVLYLLQVAAIVLFCSASSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGTSTSYGVGAVFRDLWRAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSSEDGVQSHEPQCEILRPEEATWNTGTLRNIPSKDTQRTMTNVSDEVSSEEGPETGYPLRRHADRTSESILRNRKSHHYKKHYPNEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECRSSCTSETDVENPQINPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNSHIPGIGYQIFGNAISLILGLTPFVFRLSQATDLDQLTAHSASELYMIAFGSNEDVIVLSMVMISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 751, "header": "tr|A0A4X1SFB9-1|A0A4X1SFB9_PIG Isoform 1 of Putative homeodomain transcription factor 2 OS=Sus scrofa OX=9823 GN=PHTF2 PE=4 SV=1 CANONICAL=A0A4X1SFB9-1" }, "locus": { "chromosome": "9", "start_pos": 102319526, "end_pos": 102223717, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078986.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078986.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063820.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063820.2" } ] } }, { "isoform_ac": "A0A4X1SFD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB9/entry#A0A4X1SFD2-1", "sequence": { "sequence": "MASKVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFFWLLVLYLLQVAAIVLFCSASSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGTSTSYGVGAVFRDLWRAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSSEDGVQSHEPQCEILRPEEATWNTGTLRNIPSKDTQRTMTNVSDEVSSEEGPETGYPLRRHADRTSESILRNRKSHHYKKHYPNEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECRSSCTSETDVENPQINPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNSHIPGIGYQIFGNAISLILGLTPFVFRLSQATDLDQLTAHSASELYMIAFGSNEDVIVLSMVMISFVVRVSLVWIFFFLLCVAERTYKQRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 703, "header": "tr|A0A4X1SFD2-1|A0A4X1SFD2_PIG Computationally mapped isoform of Putative homeodomain transcription factor 2 OS=Sus scrofa OX=9823 GN=PHTF2 PE=4 SV=1 CANONICAL=A0A4X1SFB9-1" }, "locus": { "chromosome": "9", "start_pos": 102319526, "end_pos": 102223717, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046348.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046348.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053508.3", "url": "https://www.ensembl.org/id/ENSSSCP00000053508.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZJB2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZJB2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M7Q4-1", "protein_name": "Putative homeodomain transcription factor 2", "gene_name": "PHTF2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASKVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFFWLLVLYLLQVAAIVLFCSASSPHSIPLTEVTEPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGTSTSYSVGAVFRDLWHAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSSEDGIQSHEPQCETLQPEEATWNTGTLRNIPSKVNDTQRTVTNVSDEVSSEEGPETGYPLRRHADRTSESILRNRKSHHYKKHYPNEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECRSSCTSETDVENPQINPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNSHIPGIGYQIFGNAISLILGLTPFVFRLSQATDLDQLTAHSASELYVIAFGSNEDVIVLSMVIISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 749 }, "evidence": [ { "id": "A0A4X1SFB9", "url": "https://omabrowser.org/oma/group/A0A4X1SFB9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8C2N3B8-1", "protein_name": "Homeodomain transcription factor 2 isoform X1", "gene_name": "Phtf2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASRVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFSWLLVLYLLQVAAIVLFCSAPSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSHGAGTSYSVGTVFRDLWNAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSGEDGPQDLEPQCETIRPEDIAWATPMPRNVPAKDAQRKITNVSDEVSSEDDPETGYSLRCHGDRTSESSLRNRKPHHYKKHYANEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECHSSCTSETDVGNPQVNPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNNHVPGIGYQIFGNAVSLILGLTPFVFRLSQATDLEQLTAHSASELYVIAFGSNEDVMVLSMVLISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVLLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 747 }, "evidence": [ { "id": "A0A4X1SFB9", "url": "https://omabrowser.org/oma/group/A0A4X1SFB9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0ABK0L440-1", "protein_name": "Putative homeodomain transcription factor 2", "gene_name": "Phtf2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASRVTDAIVWYQKKIGAYDQQIWEKSVEQREIKFIKLGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTALTRKGIVRVVFFPFFFRWWLQVTSKVIFSWLLVLYLLQVAAIVLFCSAPSPHSIPLTEVIGPVWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGTVQSPGAGAPYSVGSVFRDLWHAAFLLSGSKKTKNSIDKSTETDNGYVSLDGKRTVKSSEDGAQDHEPQCETIRPEDTAWATRTPRSVPAKDAQRKITNVSDEVSSEEGPETGYPSRCHGDRTSESGLRNRKPHHYKKHYANEDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECRSSCTSETDVGNPQINPCGKKEYRDDPFHQTHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNNHVPGIGYQIFGNAVSLILGFTPFVFRLSQATDLEQLTAHSASELYVIAFGSNEDFMVLSMVLISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFVCCAQLLHVHEIFLDCHYNWELAIWCISLSLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 751 }, "evidence": [ { "id": "A0A4X1SFB9", "url": "https://omabrowser.org/oma/group/A0A4X1SFB9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NXV0-1", "protein_name": "Putative homeodomain transcription factor 2", "gene_name": "PHTF2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASKVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTGHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFYRWWLQVTSRVIFFWLLVLYLLQVAAVVLFCTAQSPHNIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPPSTGVKRRRKLRKAAHLEVHREGDGSSTTDNTQEGTVQSYGTSTSYSIGAVFRDIWHAAFFLSGSKKAKNSIDKSTETDNGYVSLEGKKTGKSSEECAQAQERLCEVIKPEESGWSTTTMRETFSTPIHHKETHRTVTNLSDEVSSEEGPETGYSLRRNVERTSSDGTLRNRKSHHYKKHYPLEDTPKSGTSCSSRCSSSRQDSESTRPESETEDVWEDLLHCAECHSSCTSETDVESPQMNPCVKKEYRDDPFHQSHLPWIHSLNPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNSYIPGIGYQIFGNIISLILGLMPFVFRLSQAKDLEQLAAHSATELCITAFGSNGDILVLSMVVISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHMHEIFLDCHYNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 752 }, "evidence": [ { "id": "A0A4X1SFB9", "url": "https://omabrowser.org/oma/group/A0A4X1SFB9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8CB19-1", "protein_name": "Protein PHTF2", "gene_name": "Phtf2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASRVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFSRWWLQVTSRVIFSWLLVLYLLQVAAIVLFCSAPSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLGTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQSYGAGAPYSVGTVFRDLWLAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKRTVKSSEDGAQYHELQCETVGPEDAAWATRTPRSVPAKDTQRKITNVSDEVSSEEGPETGYPLRGHVDRTSESGLRNRKPHHYKKHYANEDAPKSGTSCSSRCSSSRQDSESTRPESETEGVLWEDLLHCAECRSSCTSETDVGNPQINPCGKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNNHVPGIGYQVFGNAISLILGLTPFVFRLSQATDLEQLTAHSASELYVIAFGSNEDVMVLSMVLISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHCNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 747 }, "evidence": [ { "id": "A0A4X1SFB9", "url": "https://omabrowser.org/oma/group/A0A4X1SFB9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N3S3-1", "protein_name": "Protein PHTF2", "gene_name": "PHTF2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASKVTDAIVWYQKKEFLSVATTAPGPQQVLPGYCQCSLKDQGLFIQCLIGAYDQQIWEKSVEQREIKFIKLGLRNKPKKTAHVKPDLIDVDLVRGSAFAKAKPESPWTSLTRKGIVRVVFFPFFFRWWLQVTSKVIFFWLLVLYLLQVAAIVLFCSTSSPHSIPLTEVIGPIWLMLLLGTVHCQIVSTRTPKPPLSTGGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGAVQNHGTSTSHSVGTVFRDLWHAAFFLSGSKKAKNSIDKSTETDNGYVSLDGKKTVKSGEDGIQNHEPQCETIRPEETAWNTGTLRNGPSKDTQRTITNVSDEVSSEEGPETGYSLRRHVDRTSEGVLRNRKSHHYKKHYPNEDAPKSGTSCSSRCSSSRQDSESARPESETEDVLWEDLLHCAECHSSCTSETDVENHQINPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNSHIPGIGYQIFGNAVSLILGLTPFVFRLSQATDLEQLTAHSASELYVIAFGSNEDVIVLSMVIISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS", "length": 785 }, "evidence": [ { "id": "A0A4X1SFB9", "url": "https://omabrowser.org/oma/group/A0A4X1SFB9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SFB9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB9" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SFB9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SFB9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 295, "end_pos": 297, "annotation": "n_glycosylation_sequon" }, { "start_pos": 663, "end_pos": 665, "annotation": "n_glycosylation_sequon" }, { "start_pos": 722, "end_pos": 724, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1SFB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB9" }, { "id": "PF12129", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12129" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PHTF1/2 N-terminal", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 157, "start_aa": "Lys", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 295, "end_pos": 297 }, { "start_pos": 663, "end_pos": 665 }, { "start_pos": 722, "end_pos": 724 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480EY27-1", "uniprot_ac": "A0A480EY27", "uniprot_id": "A0A480EY27_PIG", "mass": { "chemical_mass": 143029.0, "monoisotopic_mass": 143029.0 }, "refseq": { "ac": "XP_005667198", "name": "BRCA2-interacting transcriptional repressor EMSY isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667198" }, "gene_names": [ { "name": "EMSY", "type": "recommended", "evidence": [ { "id": "A0A480EY27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27" } ] }, { "name": "EMSY", "type": "synonym", "evidence": [ { "id": "XP_005667198", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667198" } ] } ], "protein_names": [ { "name": "BRCA2-interacting transcriptional repressor EMSY", "type": "recommended", "evidence": [ { "id": "A0A480EY27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27/entry#names_and_taxonomy" } ] }, { "name": "BRCA2-interacting transcriptional repressor EMSY isoform X4", "type": "synonym", "evidence": [ { "id": "XP_005667198", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667198" } ] } ], "function": [ { "annotation": "Regulator which is able to repress transcription, possibly via its interaction with a multiprotein chromatin remodeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2. Mediates ligand-dependent transcriptional activation by nuclear hormone receptors.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZLC9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLC9#function" }, { "database": "UniProtKB", "id": "ARBA00058051", "url": "https://www.uniprot.org/uniprotkb/ARBA00058051#function" }, { "database": "UniProtKB", "id": "A0A287B5H9", "url": "https://www.uniprot.org/uniprotkb/A0A287B5H9#function" }, { "database": "UniProtKB", "id": "A0A287AIH4", "url": "https://www.uniprot.org/uniprotkb/A0A287AIH4#function" }, { "database": "UniProtKB", "id": "A0A480EY27", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27#function" }, { "database": "UniProtKB", "id": "A0A480I2P7", "url": "https://www.uniprot.org/uniprotkb/A0A480I2P7#function" }, { "database": "UniProtKB", "id": "A0A480PNB5", "url": "https://www.uniprot.org/uniprotkb/A0A480PNB5#function" }, { "database": "UniProtKB", "id": "A0A4X1UJ56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UJ56#function" }, { "database": "UniProtKB", "id": "A0A8D1HZQ7", "url": "https://www.uniprot.org/uniprotkb/A0A8D1HZQ7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480EY27", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EMSY", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27", "locus": { "chromosome": "9", "start_pos": 10716396, "end_pos": 10628053, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014868", "url": "https://www.ensembl.org/id/ENSSSCG00000014868" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014868", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014868", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100621182", "url": "https://www.ncbi.nlm.nih.gov/gene/100621182", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005491", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005491", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033482", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033482", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036142", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036142", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NTTTQKX", "url": "https://omabrowser.org/oma/group/NTTTQKX/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AIH4", "url": "https://www.orthodb.org/?gene=A0A287AIH4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A480EY27", "url": "https://www.orthodb.org/?gene=A0A480EY27", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16500", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16500", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16500:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16500:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03735", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03735", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005667198", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667198", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZLC9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLC9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIH4", "url": "https://www.uniprot.org/uniprotkb/A0A287AIH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIH4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5H9", "url": "https://www.uniprot.org/uniprotkb/A0A287B5H9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5H9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5H9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480EY27", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480EY27-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480I2P7", "url": "https://www.uniprot.org/uniprotkb/A0A480I2P7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480I2P7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480I2P7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480PNB5", "url": "https://www.uniprot.org/uniprotkb/A0A480PNB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480PNB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480PNB5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UJ56", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UJ56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UJ56-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UJ56-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1HZQ7", "url": "https://www.uniprot.org/uniprotkb/A0A8D1HZQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1HZQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1HZQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1RQV2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1RQV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1RQV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1RQV2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHKMNLSLYLGERPSYSMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQHNASLPVPAETGSKEVVVCYSYTSTTSTPTSTPVPSGSIATVKSPRPASPASNVVVLPSGSTVYVKSVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQSSLVSSSSSGSSSSTPSPIPNTVAVTAVVSSTPSVVMSTVAQGVSTSAIKMASTRLPSPKSLVGAPTQILAQFPKQHQQSPKQQLHQVQQQTQQQVAQPSPVSHQQQPQQSPLPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSLGRMAATPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTIQTVPTGAKPAIITATRPITKMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVAEAGNSSIQEGKEEPQTFTDSSSSSTESSHSSQDSQPVVHVIASRRQDWSEHEIAMETSPTIIYQDVSSESQSATSTIKALLELQQTTVKEKLESKPRQPTIDLSQMAVPIQMTQEKRHSPESPSIAVVESELVAEYITTERTDEGTEVAFPLLVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSAKQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQHPVVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMPLPASSEKQPASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILKMSLMEAQIDTNVEHMVVDPPKKALATSMLTAEAGSLPTTHVVVAGMANSTPQQQKCRESCSSPSAVGPPLTTRKIDAPGVPTTGQFMRIQNVGQKKAEESPAEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDIDSSTEDGTEPSPSQSSADRS", "length": 1337, "header": "tr|A0A480EY27-1|A0A480EY27_PIG Isoform 1 of BRCA2-interacting transcriptional repressor EMSY OS=Sus scrofa OX=9823 GN=EMSY PE=4 SV=1 CANONICAL=A0A480EY27-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27/entry#A0A286ZLC9-1", "sequence": { "sequence": "MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQHNASLPVPAETGSKEGVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQSSLVSSSSSGSSSSTPSPIPNTVAVTAVVSSTPSVVMSTVAQGVSTSAIKMASTRLPSPKSLVGAPTQILAQFPKQHQQSPKQQLHQVQQQTQQQVAQPSPVSHQQQPQQSPLPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSLGRMAATPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTIQTVPTGAKPAIITATRPITKMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVAEAGNSSIQEGKEEPQTFTDSSSSSTESSHSSQDSQPVVHVIASRRQDWSEHEIAMETSPTIIYQDVSSESQSATSTIKALLELQQTTVKEKLESKPRQPTIDLSQMAVPIQMTQEKRHSPESPSIAVVESELVAEYITTERTDEGTEVAFPLLVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSAKQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQHPVVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMPLPASSEKQPASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILKMSLMEAQIDTNVEHMVVDPPKKALATSMLTAEAGSLPTTHVVVAGMANSTPQQQKCRESCSSPSAVGPPLTTRKIDAPGVPTTGQFMRIQNVGQKKAEESPAEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDIDSSTEDGTEPSPSQSSADRS", "length": 1272, "header": "tr|A0A286ZLC9-1|A0A480EY27_PIG Computationally mapped isoform of BRCA2-interacting transcriptional repressor EMSY OS=Sus scrofa OX=9823 GN=EMSY PE=4 SV=1 CANONICAL=A0A480EY27-1" }, "locus": { "chromosome": "9", "start_pos": 10713980, "end_pos": 10630129, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065038.2", "url": "https://www.ensembl.org/id/ENSSSCT00000065038.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032246.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032246.1" } ] } }, { "isoform_ac": "A0A287AIH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27/entry#A0A287AIH4-1", "sequence": { "sequence": "MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQHNASLPVPAETGSKEVVVCYSYTSTTSTPTSTPVPSGSIATVKSPRPASPASNVVVLPSGSTVYVKSVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQSSLVSSSSSGSSSSTPSPIPNTVAVTAVVSSTPSVVMSTVAQGVSTSAIKMASTRLPSPKSLVGAPTQILAQFPKQHQQSPKQQLHQVQQQTQQQVAQPSPVSHQQQPQQSPLPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSLGRMAATPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTIQTVPTGAKPAIITATRPITKMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVAEAGNSSIQEGKEEPQTFTDSSSSSTESSHSSQDSQPVVHVIASRRQDWSEHEIAMETSPTIIYQDVSSESQSATSTIKALLELQQTTVKEKLESKPRQPTIDLSQMAVPIQMTQEKRHSPESPSIAVVESELVAEYITTERTDEGTEVAFPLLVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSAKQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQHPVVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMPLPASSEKQPASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILKMSLMEAQIDTNVEHMVVDPPKKALATSMLTAEAGSLPTTHVVVAGMANSTPQQQKCRESCSSPSAVGPPLTTRKIDAPGVPTTGQFMRIQNVGQKKAEESPAEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDIDSSTEDGTEPSPSQSSADRS", "length": 1323, "header": "tr|A0A287AIH4-1|A0A480EY27_PIG Computationally mapped isoform of BRCA2-interacting transcriptional repressor EMSY OS=Sus scrofa OX=9823 GN=EMSY PE=4 SV=2 CANONICAL=A0A480EY27-1" }, "locus": { "chromosome": "9", "start_pos": 10713980, "end_pos": 10630129, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042237.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042237.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043690.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043690.2" } ] } }, { "isoform_ac": "A0A287B5H9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27/entry#A0A287B5H9-1", "sequence": { "sequence": "MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHKMNLSLYLGERPSYSMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQHNASLPVPAETGSKEVVCYSYTSTTSTPTSTPVPSGSIATVKSPRPASPASNVVVLPSGSTVYVKSVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQSSLVSSSSSGSSSSTPSPIPNTVAVTAVVSSTPSVVMSTVAQGVSTSAIKMASTRLPSPKSLVGAPTQILAQFPKQHQQSPKQQLHQVQQQTQQQVAQPSPVSHQQQPQQSPLPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSLGRMAATPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTIQTVPTGAKPAIITATRPITKMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVAEAGNSSIQEGKEEPQTFTDSSSSSTESSHSSQDAVVISGEISSPPLFSVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSAKQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQHPVVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMPLPASSEKQPASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILKMSLMEAQIDTNVEHMVVDPPKKALATSMLTAEAGSLPTTHVVVAGMANSTPQQQKCRESCSSPSAVGPPLTTRKIDAPGVPTTGQFMRIQNVGQKKAEESPAEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDIDSSTEDGTEPSPSQSSADRS", "length": 1231, "header": "tr|A0A287B5H9-1|A0A480EY27_PIG Computationally mapped isoform of BRCA2-interacting transcriptional repressor EMSY OS=Sus scrofa OX=9823 GN=EMSY PE=4 SV=2 CANONICAL=A0A480EY27-1" }, "locus": { "chromosome": "9", "start_pos": 10713980, "end_pos": 10630129, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062021.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062021.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051353.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051353.2" } ] } }, { "isoform_ac": "A0A480EY27-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27/entry#A0A480EY27-1", "sequence": { "sequence": "MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHKMNLSLYLGERPSYSMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQHNASLPVPAETGSKEVVVCYSYTSTTSTPTSTPVPSGSIATVKSPRPASPASNVVVLPSGSTVYVKSVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQSSLVSSSSSGSSSSTPSPIPNTVAVTAVVSSTPSVVMSTVAQGVSTSAIKMASTRLPSPKSLVGAPTQILAQFPKQHQQSPKQQLHQVQQQTQQQVAQPSPVSHQQQPQQSPLPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSLGRMAATPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTIQTVPTGAKPAIITATRPITKMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVAEAGNSSIQEGKEEPQTFTDSSSSSTESSHSSQDSQPVVHVIASRRQDWSEHEIAMETSPTIIYQDVSSESQSATSTIKALLELQQTTVKEKLESKPRQPTIDLSQMAVPIQMTQEKRHSPESPSIAVVESELVAEYITTERTDEGTEVAFPLLVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSAKQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQHPVVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMPLPASSEKQPASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILKMSLMEAQIDTNVEHMVVDPPKKALATSMLTAEAGSLPTTHVVVAGMANSTPQQQKCRESCSSPSAVGPPLTTRKIDAPGVPTTGQFMRIQNVGQKKAEESPAEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDIDSSTEDGTEPSPSQSSADRS", "length": 1337, "header": "tr|A0A480EY27-1|A0A480EY27_PIG Isoform 1 of BRCA2-interacting transcriptional repressor EMSY OS=Sus scrofa OX=9823 GN=EMSY PE=4 SV=1 CANONICAL=A0A480EY27-1" }, "locus": { "chromosome": "9", "start_pos": 10713980, "end_pos": 10630129, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081702.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081702.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073548.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073548.2" } ] } }, { "isoform_ac": "A0A480I2P7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27/entry#A0A480I2P7-1", "sequence": { "sequence": "MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQHNASLPVPAETGSKEVVVCYSYTSTTSTPTSTPVPSGSIATVKSPRPASPASNVVVLPSGSTVYVKSVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQSSLVSSSSSGSSSSTPSPIPNTVAVTAVVSSTPSVVMSTVAQGVSTSAIKMASTRLPSPKSLVGAPTQILAQFPKQHQQSPKQQLHQVQQQTQQQVAQPSPVSHQQQPQQSPLPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSLGRMAATPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTIQTVPTGAKPAIITATRPITKMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVAEAGNSSIQEGKEEPQTFTDSSSSSTESSHSSQDSQPVVHVIASRRQDWSEHEIAMETSPTIIYQDVSSESQSATSTIKALLELQQTTVKEKLESKPRQPTIDLSQMAVPIQMTQEKRHSPESPSIAVVESELVAEYITTVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSAKQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQHPVVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMPLPASSEKQPASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILKMSLMEAQIDTNVEHMVVDPPKKALATSMLTAEAGSLPTTHVVVAGMANSTPQQQKCRESCSSPSAVGPPLTTRKIDAPGVPTTGQFMRIQNVGQKKAEESPAEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDIDSSTEDGTEPSPSQSSADRS", "length": 1309, "header": "tr|A0A480I2P7-1|A0A480I2P7_PIG Computationally mapped isoform of BRCA2-interacting transcriptional repressor EMSY OS=Sus scrofa OX=9823 GN=EMSY PE=4 SV=1 CANONICAL=A0A480EY27-1" }, "locus": { "chromosome": "9", "start_pos": 10713980, "end_pos": 10630129, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083480.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083480.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073010.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073010.2" } ] } }, { "isoform_ac": "A0A480PNB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27/entry#A0A480PNB5-1", "sequence": { "sequence": "MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQHNASLPVPAETGSKEGVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQSSLVSSSSSGSSSSTPSPIPNTVAVTAVVSSTPSVVMSTVAQGVSTSAIKMASTRLPSPKSLVGAPTQILAQFPKQHQQSPKQQLHQVQQQTQQQVAQPSPVSHQQQPQQSPLPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSLGRMAATPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTIQTVPTGAKPAIITATRPITKMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVAEAGNSSIQEGKEEPQTFTDSSSSSTESSHSSQVKEKLESKPRQPTIDLSQMAVPIQMTQEKRHSPESPSIAVVESELVAEYITTERTDEGTEVAFPLLVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSAKQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQHPVVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMPLPASSEKQPASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILKMSLMEAQIDTNVEHMVVDPPKKALATSMLTAEAGSLPTTHVVVAGMANSTPQQQKCRESCSSPSAVGPPLTTRKIDAPGVPTTGQFMRIQNVGQKKAEESPAEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDIDSSTEDGTEPSPSQSSADRS", "length": 1217, "header": "tr|A0A480PNB5-1|A0A480PNB5_PIG Computationally mapped isoform of BRCA2-interacting transcriptional repressor EMSY OS=Sus scrofa OX=9823 GN=EMSY PE=4 SV=1 CANONICAL=A0A480EY27-1" }, "locus": { "chromosome": "9", "start_pos": 10713980, "end_pos": 10630129, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062568.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062568.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047558.3", "url": "https://www.ensembl.org/id/ENSSSCP00000047558.3" } ] } }, { "isoform_ac": "A0A4X1UJ56-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27/entry#A0A4X1UJ56-1", "sequence": { "sequence": "MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQHNASLPVPAETGSKEVVVCYSYTSTTSTPTSTPVPSGSIATVKSPRPASPASNVVVLPSGSTVYVKSVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQSSLVSSSSSGSSSSTPSPIPNTVAVTAVVSSTPSVVMSTVAQGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSLGRMAATPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTIQTVPTGAKPAIITATRPITKMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVAEAGNSSIQEGKEEPQTFTDSSSSSTESSHSSQDSQPVVHVIASRRQDWSEHEIAMETSPTIIYQDVSSESQSATSTIKALLELQQTTVKEKLESKPRQPTIDLSQMAVPIQMTQEKRHSPESPSIAVVESELVAEYITTVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSAKQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQHPVVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMPLPASSEKQPASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILKMSLMEAQIDTNVEHMVVDPPKKALATSMLTAEAGSLPTTHVVVAGMANSTPQQQKCRESCSSPSAVGPPLTTRKIDAPGVPTTGQFMRIQNVGQKKAEESPAEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDIDSSTEDGTEPSPSQSSADRS", "length": 1224, "header": "tr|A0A4X1UJ56-1|A0A4X1UJ56_PIG Computationally mapped isoform of BRCA2-interacting transcriptional repressor EMSY OS=Sus scrofa OX=9823 GN=EMSY PE=4 SV=1 CANONICAL=A0A480EY27-1" }, "locus": { "chromosome": "9", "start_pos": 10713980, "end_pos": 10630129, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062543.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062543.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043020.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043020.2" } ] } }, { "isoform_ac": "A0A8D1HZQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27/entry#A0A8D1HZQ7-1", "sequence": { "sequence": "MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQHNASLPVPAETGSKEGVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQSSLVSSSSSGSSSSTPSPIPNTVAVTAVVSSTPSVVMSTVAQGVSTSAIKMASTRLPSPKSLVGAPTQILAQFPKQHQQSPKQQLHQVQQQTQQQVAQPSPVSHQQQPQQSPLPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSLGRMAATPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTIQTVPTGAKPAIITATRPITKMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVAEAGNSSIQEGKEEPQTFTDSSSSSTESSHSSQDSQPVVHVIASRRQDWSEHEIAMETSPTIIYQDVSSESQSATSTIKALLELQQTTVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSAKQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQHPVVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMPLPASSEKQPASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILKMSLMEAQIDTNVEHMVVDPPKKALATSMLTAEAGSLPTTHVVVAGMANSTPQQQKCRESCSSPSAVGPPLTTRKIDAPGVPTTGQFMRIQNVGQKKAEESPAEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDIDSSTEDGTEPSPSQSSADRS", "length": 1206, "header": "tr|A0A8D1HZQ7-1|A0A480EY27_PIG Computationally mapped isoform of BRCA2-interacting transcriptional repressor EMSY OS=Sus scrofa OX=9823 GN=EMSY PE=4 SV=1 CANONICAL=A0A480EY27-1" }, "locus": { "chromosome": "9", "start_pos": 10713980, "end_pos": 10630129, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016221.3", "url": "https://www.ensembl.org/id/ENSSSCT00000016221.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015788.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015788.3" } ] } }, { "isoform_ac": "A0A8D1RQV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27/entry#A0A8D1RQV2-1", "sequence": { "sequence": "MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQHNASLPVPAETGSKEGVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQSSLVSSSSSGSSSSTPSPIPNTVAVTAVVSSTPSVVMSTVAQGVSTSAIKMASTRLPSPKSLVGAPTQILAQFPKQHQQSPKQQLHQVQQQTQQQVAQPSPVSHQQQPQQSPLPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSLGRMAATPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTIQTVPTGAKPAIITATRPITKMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVAEAGNSSIQEGKEEPQTFTDSSSSSTESSHSSQVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSAKQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQHPVVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMPLPASSEKQPASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILKMSLMEAQIDTNVEHMVVDPPKKALATSMLTAEAGSLPTTHVVVAGMANSTPQQQKCRESCSSPSAVGPPLTTRKIDAPGVPTTGQFMRIQNVGQKKAEESPAEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDIDSSTEDGTEPSPSQSSADRS", "length": 1126, "header": "tr|A0A8D1RQV2-1|A0A480EY27_PIG Computationally mapped isoform of BRCA2-interacting transcriptional repressor EMSY OS=Sus scrofa OX=9823 GN=EMSY PE=4 SV=1 CANONICAL=A0A480EY27-1" }, "locus": { "chromosome": "9", "start_pos": 10713980, "end_pos": 10630129, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062151.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062151.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047900.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047900.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 357, "start_aa": "Thr", "end_pos": 357, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr357", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 374, "start_aa": "Thr", "end_pos": 374, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr374", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 540, "start_aa": "Thr", "end_pos": 540, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr540", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1HZQ7", "url": "https://www.uniprot.org/uniprotkb/A0A8D1HZQ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1NAY2-1", "protein_name": "BRCA2-interacting transcriptional repressor EMSY", "gene_name": "EMSY", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHKMNLSLYLGERPSYSMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAVQHNASLPVPAETGSKEVVVCYSYTSTTSTPTSTPVPSGSIATVKSPRPASPASNVVVLPSGSTVYVKSVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNSTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQSSLVSSSSSGSSSSTPSPIPNTVAVTAVVSSTPSVVMSTVAQGVSTSAIKMASTRLPSPKSLVGAPTQILAQFPKQHQQSPKQQLHQVQQQTQQQVAQPSPVSHQQQPQQSPLPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSIGRMAATPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTIQTVPTGAKPAIITATRPITKMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVAEAGNSSIQEGKEEPQSYTDSSSSSTESSQSSQDSQPVVHVIASRRQDWSEHEIAMETSPTIIYQDVSSESQSATSTIKALLELQQTTVKEKLESKPRQPTIDLSQMAVPIQMTQEKRHSPESPSIAVVESELVAEYITTERTDEGTEVAFPLLVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSAKPQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQHPMVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMPLPASSEKQPASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILKMSLMEAQIDTNVEHLVVDPPKKALATGVLTGEAGSLPSTHVVVAGMANSTPQQQKCRESCSSPSAVGPPLTTRKIDAPGVPATGQFMRIQNVGQKKAEESPAEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDIDSSTEDGTEPSPSQSSAERS", "length": 1337 }, "evidence": [ { "id": "A0A480EY27", "url": "https://omabrowser.org/oma/group/A0A480EY27/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8I6ATJ6-1", "protein_name": "BRCA2-interacting transcriptional repressor EMSY", "gene_name": "Emsy", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHKMNLSLYLGERPSYSMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAVQHNASLPVPAETASKEVVVCYSYTSTTSTPTSTPVPSGSIATVKSPRPASPASSVVVLPSGSTVYVKSVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQASLVTSSSNGNSNSTSSSISSTVAVTAVVSSTPSVVMSTVAQGVSTSAIKVASTRLPSPKSLVSGPTQILAQFPKQHQQSPKQQLQQVPPQTPQPGAQPSSVSQQQQQQQQQQQQQQQQQQQQQQQQQPQHSPLPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSLGRVATTPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTLQTVPTGAKPAIITATRPITKMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVAEAGNSSAQEGKEEPQGYTDSSSSSTESSQSSQDSQPVVHVIASRRQDWSEHEIAMETSPTIIYQDVSSESQSATSTIKALLELQQTTVKEKLESKPRQPTIDLSQMAVPIQMTQEKRHSPESPSIAVVESELVAEYITTVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAVTHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSTKQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLTQMPQLSVRHQKLTPLQQEQAQPKPDAQHTQHTVVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQAPQSQMALPTSSEKQPASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILQMSLMEAQIDTNVEHMVVDPPKKALATSVLTGEAGALPSTHVVVAGMTKCRESCSSPSAVGPPLTTRKVEAAGVPTTGQFMRIQNVGQKKAEESPTEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDVDSSTEDGTEPSPSQSAVERS", "length": 1337 }, "evidence": [ { "id": "A0A480EY27", "url": "https://omabrowser.org/oma/group/A0A480EY27/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A9J7FM96-1", "protein_name": "BRCA2-interacting transcriptional repressor EMSY", "gene_name": "Emsy", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHKMNLSLYLGERPSYSMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAVQHNASLPVPAETASKEVVVCYSYTSTTSTPTSTPVPSGSIATVKSPRPASPASSVVVLPSGSTVYVKSVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQSSLVSSSSSGNSSSTSSPVSSTVAVTAVVSSTPSVVMSTVAQGVSTSAIKMASTRLPSPKSLVSAPTQILAQFPKQHQQSPKQQLHQVQQQTQQPVAQPSSVSQQQQPQQSPLPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSLGRVATTPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTLQTVPTGAKPAIITATRPITKMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVAEAGNSSAQEGKEEPQGYTDSSSSSTESSQSSQDSQPVVHVIASRRQDWSEHEIAMETSPTIIYQDVSSESQSATSTIKALLELQQTTVKEKLESKPRQPTIDLSQMAVPIQMTQEKRHSPESPSIAVVESELVAEYITTERTDEGTEVAFPLLVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGTITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSTKQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLTQMPQLSIRHQKLTPLQQEQAQPKPDAQHTQHPVVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMALPTSSEKQPASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILQMSLMEAQIDTNVEHMVVDPPKKALATGVLTGEAGALPSTHVVVAGMAKCRESCSSPSAVGPPLTTRKMEAAGVPATGQFMRIQNVGQKKAEESPTEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDDTAMEQDVDSSTEDGTEPSPSQSSAERS", "length": 1330 }, "evidence": [ { "id": "A0A480EY27", "url": "https://omabrowser.org/oma/group/A0A480EY27/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q7Z589-1", "protein_name": "BRCA2-interacting transcriptional repressor EMSY", "gene_name": "EMSY", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQHNASLPVPAETGSKEVVCYSYTSTTSTPTSTPVPSGSIATVKSPRPASPASNVVVLPSGSTVYVKSVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQSSLVSNSSSGSSSSTPSPIPNTVAVTAVVSSTPSVVMSTVAQGVSTSAIKMASTRLPSPKSLVSAPTQILAQFPKQHQQSPKQQLYQVQQQTQQQVAQPSPVSHQQQPQQSPLPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSIGRMAATPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTIQTVPTGAKPAILTATRPITKMIVTQPKGIGSTVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVAEAGNSSIQEGKEEPQNYTDSSSSSTESSQSSQDSQPVVHVIASRRQDWSEHEIAMETSPTIIYQDVSSESQSATSTIKALLELQQTTVKEKLESKPRQPTIDLSQMAVPIQMTQEKRHSPESPSIAVVESELVAEYITTERTDEGTEVAFPLLVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSAKQQKLSQPPLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLPQMPQLSIRHQKLTPLQQEQAQPKPDVQHTQHPMVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMSLPASSEKQTASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILKMSLMEAQIDTNVEHMIVDPPKKALATSMLTGEAGSLPSTHMVVAGMANSTPQQQKCRESCSSPSTVGSSLTTRKIDPPAVPATGQFMRIQNVGQKKAEESPAEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDEETAMEQDIDSSTEDGTEPSPSQSSAERS", "length": 1322 }, "evidence": [ { "id": "A0A480EY27", "url": "https://omabrowser.org/oma/group/A0A480EY27/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BMB0-1", "protein_name": "BRCA2-interacting transcriptional repressor EMSY", "gene_name": "Emsy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPVVWPTLLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHKMNLSLYLGERPSYSMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAVQHNASLPVPAETASKDGVSCSDEDEKPRKRRRTNSSSSSPVVLKEVPKAVVPVSKTITVPVSGSPKMSNIMQSIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVPNILSKSHNYAAVTKLVPTSVIASTTQKPPVVITASQASLVTSSSNGNSSSTSSPISSTVAVTTVVSSTPSVVMSTVAQGVSTSAIKVASTRLPSPKSLVSGPTQILAQFPKQHQQSPKQQLQQVQQQTQQPVAQPSSVSQQQQPQQSALPPGIKPTIQIKQESGVKIITQQVQPSKILPKPVTATLPTSSNSPIMVVSSNGAIMTTKLVTTPTGTQATYTRPTVSPSLGRVATTPGAATYVKTTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTIPMTSKPNVIVVQKTTGKGTTIQGLPGKNVVTTLLNAGGEKTLQTVPAGAKPAIITATRPITKMIVTQPKGIGSAVQPAAKIIPTKIVYGQQGKTQVLIKPKPVTFQATVVSEQTRQLVTETLQQASRVADASNSSAQEGKEEPQGYTDSSSSSTESSQSSQDSQPVVHVIASRRQDWSEHEIAMETSPTIIYQDVSSESQSATSTIKALLELQQTTVKEKLESKPRQPTIDLSQMAVPIQMTQEKRHSPESPSIAVVESELVAEYITTVSHRSQPQQPSQPQRTLLQHVAQSQTATQTSVVVKSIPASSPGAITHIMQQALSSHTAFTKHSEELGTEEGEVEEMDTLDPQTGLFYRSALTQSQSTKQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQADQLQHKLTQMPQLSIRHQKLNPLQQEQAQPKPDAQHTQHTVVAKDRQLPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQSQMALPSSEKQPASQVEQPIITQGSSVTKITFEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTAVSDILQMSLMEAQIDTNVEHMVVDPPKKALATNVLTGEAGALPSTHVVVAGMTKCRESCSSPSAVGPPLTTRKIEAAGVPTTGQFMRIQNVGQKKAEESPTEIIIQAIPQYAIPCHSSSNVVVEPSGLLELNNFTSQQLDDDETAMEQDIDSSTEDGTEPSPSQSAVERS", "length": 1264 }, "evidence": [ { "id": "A0A480EY27", "url": "https://omabrowser.org/oma/group/A0A480EY27/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480EY27", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A480EY27", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "A0A480EY27", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A480EY27", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A480EY27", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27" } ], "pmid": "" }, { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "A0A480EY27", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A480EY27", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1214, "end_pos": 1216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1300, "end_pos": 1302, "annotation": "n_glycosylation_sequon" }, { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 223, "end_pos": 225, "annotation": "n_glycosylation_sequon" }, { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" }, { "start_pos": 718, "end_pos": 720, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480EY27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480EY27" }, { "id": "PS51138", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51138" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ENT", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 114, "start_aa": "Cys", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 357, 374, 540 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 }, { "start_pos": 1214, "end_pos": 1216 }, { "start_pos": 1300, "end_pos": 1302 }, { "start_pos": 141, "end_pos": 143 }, { "start_pos": 223, "end_pos": 225 }, { "start_pos": 287, "end_pos": 289 }, { "start_pos": 718, "end_pos": 720 }, { "start_pos": 84, "end_pos": 86 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BSI6-1", "uniprot_ac": "A0A287BSI6", "uniprot_id": "A0A287BSI6_PIG", "mass": { "chemical_mass": 50465.0, "monoisotopic_mass": 50465.0 }, "refseq": { "ac": "NP_001230858", "name": "armadillo repeat-containing protein 6 isoform 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230858" }, "gene_names": [ { "name": "ARMC6", "type": "recommended", "evidence": [ { "id": "A0A287BSI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI6" } ] }, { "name": "ARMC6", "type": "synonym", "evidence": [ { "id": "NP_001230858", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230858" } ] } ], "protein_names": [ { "name": "Armadillo repeat-containing protein 6", "type": "recommended", "evidence": [ { "id": "A0A287BSI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI6/entry#names_and_taxonomy" } ] }, { "name": "armadillo repeat-containing protein 6 isoform 1", "type": "synonym", "evidence": [ { "id": "NP_001230858", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230858" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BSI6", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARMC6", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI6", "locus": { "chromosome": "2", "start_pos": 58808692, "end_pos": 58828489, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000049430", "url": "https://www.ensembl.org/id/ENSSSCG00000049430" } ] } } ], "crossref": [ { "id": "A0A287BSI6", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BSI6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000049430", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000049430", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512037", "url": "https://www.ncbi.nlm.nih.gov/gene/100512037", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512037", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512037", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BSI6", "url": "https://www.orthodb.org/?gene=A0A287BSI6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22895", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22895", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22895:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22895:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27652", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27652", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001230858", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230858", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZLT4", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLT4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSI6", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAZ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJJ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2D5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2D5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2D5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2D5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7D6", "url": "https://www.uniprot.org/uniprotkb/F1S7D6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7D6-1", "url": "https://www.uniprot.org/uniprotkb/F1S7D6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASKRITQETFDAAVRENIEEFEMGPEEAVKEAVKQFESQGVDLSNIVKMTPKVSADGAQEPIHDILQALDDLQESVAHSHPQEASAHLARFCEQCKQHKACRFLAAEKGAYPILLATWKLAAAGDPGLLIQALNALSALTEGQPDLLDTQGLQLLVATLARNADSANVTSSGIRCVRHACLKHEQNRQSLVKAGVLPLLTGAISRHRHCADVVREACWALRVMTFDDDIRVPFGHAHDHAKMIVQENGGLKVLIEAAKAFPDNPSILSELCSTLSRLAVRNEFCQEVVDLGGLNVLVALLADCNDHQDLVKQVLSALRAIAGNDDVKDAIVRAGGTESIVAAMTRHLASPQVCEQSCAALCVLALRKPENSRVIMEGGGALAALQAMKAHPQEAGVQKQACMLIRNLVARRQAFSQPILDLGAEALISQARAAHRDCEDVAKAALRDLGCHVELRELWTGQKGNLAP", "length": 468, "header": "tr|A0A287BSI6-1|A0A287BSI6_PIG Isoform 1 of Armadillo repeat-containing protein 6 OS=Sus scrofa OX=9823 GN=ARMC6 PE=1 SV=1 CANONICAL=A0A287BSI6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI6/entry#A0A286ZLT4-1", "sequence": { "sequence": "MASKRITQETFDAAVRENIEEFEMGPEEAVKEAVKQFESQGVDLSNIVKMTPKVSADGAQEPIHDILQALDDLQESVAHSHPQEASAHLARFCEQCKQHKACRFLAAEKGAYPILLATWKLAAAGDPGLLIQALNALSALTEGQPDLLDTQGLQLLVATLARNADSANVTSSGIRCVRHACLKHEQNRQSLVKAGVLPLLTGAISRHRHCADVVREACWALRVMTFDDDIRVPFGHAHDHAKMIVQENGGLKVLIEAAKAFPDNPSILSELCSTLSRLAVRNEFCQEVVDLGGLNVLVALLADCNDHQDLVKQVLSALRAIAGNDDVKDAIVRAGGTESIVAAMTRHLASPQVCEQSCAALCVLALRKPENSRVIMEGGGALAALQAMKAHPQEAGVQVEVPWPRIKSLPLQ", "length": 412, "header": "tr|A0A286ZLT4-1|A0A287BSI6_PIG Computationally mapped isoform of Armadillo repeat-containing protein 6 OS=Sus scrofa OX=9823 GN=ARMC6 PE=1 SV=2 CANONICAL=A0A287BSI6-1" }, "locus": { "chromosome": "2", "start_pos": 58820842, "end_pos": 58810711, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059715.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059715.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032589.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032589.2" } ] } }, { "isoform_ac": "A0A287BSI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI6/entry#A0A287BSI6-1", "sequence": { "sequence": "MASKRITQETFDAAVRENIEEFEMGPEEAVKEAVKQFESQGVDLSNIVKMTPKVSADGAQEPIHDILQALDDLQESVAHSHPQEASAHLARFCEQCKQHKACRFLAAEKGAYPILLATWKLAAAGDPGLLIQALNALSALTEGQPDLLDTQGLQLLVATLARNADSANVTSSGIRCVRHACLKHEQNRQSLVKAGVLPLLTGAISRHRHCADVVREACWALRVMTFDDDIRVPFGHAHDHAKMIVQENGGLKVLIEAAKAFPDNPSILSELCSTLSRLAVRNEFCQEVVDLGGLNVLVALLADCNDHQDLVKQVLSALRAIAGNDDVKDAIVRAGGTESIVAAMTRHLASPQVCEQSCAALCVLALRKPENSRVIMEGGGALAALQAMKAHPQEAGVQKQACMLIRNLVARRQAFSQPILDLGAEALISQARAAHRDCEDVAKAALRDLGCHVELRELWTGQKGNLAP", "length": 468, "header": "tr|A0A287BSI6-1|A0A287BSI6_PIG Isoform 1 of Armadillo repeat-containing protein 6 OS=Sus scrofa OX=9823 GN=ARMC6 PE=1 SV=1 CANONICAL=A0A287BSI6-1" }, "locus": { "chromosome": "2", "start_pos": 58820842, "end_pos": 58809237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041961.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041961.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059619.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059619.1" } ] } }, { "isoform_ac": "A0A5G2QAZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI6/entry#A0A5G2QAZ9-1", "sequence": { "sequence": "MGSLTARPPGNSWVLFSKVGLGASVGHLWPHTEELKMASKRITQETFDAAVRENIEEFEMGPEEAVKEAVKQFESQGVDLSNIVKMTPKVSADGAQEPIHDILQALDDLQESVAHSHPQEASAHLARFCEQCKQHKACRFLAAEKGAYPILLATWKLAAAGDPGLLIQALNALSALTEGQPDLLDTQGLQLLVATLARNADSANVTSSGIRCVRHACLKHEQNRQSLVKAGVLPLLTGAISRHRHCADVVREACWALRVMTFDDDIRVPFGHAHDHAKMIVQENGGLKVLIEAAKAFPDNPSILSELCSTLSRLAVRNEFCQEVVDLGGLNVLVALLADCNDHQDLVKQVLSALRAIAGNDDVKDAIVRAGGTESIVAAMTRHLASPQVCEQSCAALCVLALRKPENSRVIMEGGGALAALQAMKAHPQEAGVQKQACMLIRNLVARRQAFSQPILDLGAEALISQARAAHRDCEDVAKAALRDLGCHVELRELWTGQKGNLAP", "length": 504, "header": "tr|A0A5G2QAZ9-1|A0A287BSI6_PIG Computationally mapped isoform of Armadillo repeat-containing protein 6 OS=Sus scrofa OX=9823 GN=ARMC6 PE=1 SV=1 CANONICAL=A0A287BSI6-1" }, "locus": { "chromosome": "2", "start_pos": 58827459, "end_pos": 58809237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071690.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071690.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061212.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061212.1" } ] } }, { "isoform_ac": "A0A5G2QJJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI6/entry#A0A5G2QJJ2-1", "sequence": { "sequence": "GKKICLPAAAVTGSRPEKVAETPLPHTCWLSWPYLYPRSPLVTQGAVLQAERGRGEAAPARLRAYGGRKGPAALQLVTAANPTLFPRGREDRALDDLQESVAHSHPQEASAHLARFCEQCKQHKACRFLAAEKGAYPILLATWKLAAAGDPGLLIQALNALSALTEGQPDLLDTQGLQLLVATLARNADSANVTSSGIRCVRHACLKHEQNRQSLVKAGVLPLLTGAISRHRHCADVVREACWALRVMTFDDDIRVPFGHAHDHAKMIVQENGGLKVLIEAAKAFPDNPSILSELCSTLSRLAVRNEFCQEVVDLGGLNVLVALLADCNDHQDLVKQVLSALRAIAGNDDVKDAIVRAGGTESIVAAMTRHLASPQVCEQSCAALCVLALRKPENSRVIMEGGGALAALQAMKAHPQEAGVQKQACMLIRNLVARRQAFSQPILDLGAEALISQARAAHRDCEDVAKAALRDLGCHVELRELWTGQKGNLAP", "length": 492, "header": "tr|A0A5G2QJJ2-1|A0A287BSI6_PIG Computationally mapped isoform of Armadillo repeat-containing protein 6 OS=Sus scrofa OX=9823 GN=ARMC6 PE=1 SV=1 CANONICAL=A0A287BSI6-1" }, "locus": { "chromosome": "2", "start_pos": 58828383, "end_pos": 58809237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079565.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079565.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062210.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062210.1" } ] } }, { "isoform_ac": "A0A5G2R2D5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI6/entry#A0A5G2R2D5-1", "sequence": { "sequence": "MVARFSVAISPSMKLSSHLLSLGASVGHLWPHTEELKMASKRITQETFDAAVRENIEEFEMGPEEAVKEAVKQFESQGVDLSNIVKMTPKVSADGAQEPIHDILQALDDLQESVAHSHPQEASAHLARFCEQCKQHKACRFLAAEKGAYPILLATWKLAAAGDPGLLIQALNALSALTEGQPDLLDTQGLQLLVATLARNADSANVTSSGIRCVRHACLKHEQNRQSLVKAGVLPLLTGAISRHRHCADVVREACWALRVMTFDDDIRVPFGHAHDHAKMIVQENGGLKVLIEAAKAFPDNPSILSELCSTLSRLAVRNEFCQEVVDLGGLNVLVALLADCNDHQDLVKQVLSALRAIAGNDDVKDAIVRAGGTESIVAAMTRHLASPQVCEQSCAALCVLALRKPENSRVIMEGGGALAALQAMKAHPQEAGVQKQACMLIRNLVARRQAFSQPILDLGAEALISQARAAHRDCEDVAKAALRDLGCHVELRELWTGQKGNLAP", "length": 505, "header": "tr|A0A5G2R2D5-1|A0A287BSI6_PIG Computationally mapped isoform of Armadillo repeat-containing protein 6 OS=Sus scrofa OX=9823 GN=ARMC6 PE=1 SV=1 CANONICAL=A0A287BSI6-1" }, "locus": { "chromosome": "2", "start_pos": 58820953, "end_pos": 58809237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084915.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084915.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064693.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064693.1" } ] } }, { "isoform_ac": "F1S7D6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI6/entry#F1S7D6-1", "sequence": { "sequence": "MASKRITQETFDAAVRENIEEFEMGPEEAVKEAVKQFESQGVDLSNIVKMTPKVSADGAQEPIHDILQALDDLQESVAHSHPQEASAHLARFCEQCKQHKACRFLAAEKGAYPILLATWKLAAAGDPGLLIQALNALSALTEGQPDLLDTQGLQLLVATLARNADSANVTSSGIRCVRHACLKHEQNRQSLVKAGVLPLLTGAISRHRHCADVVREACWALRVMTFDDDIRVPFGHAHDHAKMIVQENGGLKVLIEAAKAFPDNPSILSELCSTLSRLAVRNEFCQEVVDLGGLNVLVALLADCNDHQDLVKQVLSALRAIAGNDDVKDAIVRAGGTESIVAAMTRHLASPQKQACMLIRNLVARRQAFSQPILDLGAEALISQARAAHRDCEDVAKAALRDLGCHVELRELWTGQKGNLAP", "length": 422, "header": "tr|F1S7D6-1|A0A287BSI6_PIG Computationally mapped isoform of Armadillo repeat-containing protein 6 OS=Sus scrofa OX=9823 GN=ARMC6 PE=1 SV=2 CANONICAL=A0A287BSI6-1" }, "locus": { "chromosome": "2", "start_pos": 58820842, "end_pos": 58809237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015213.3", "url": "https://www.ensembl.org/id/ENSSSCT00000015213.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014807.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014807.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAZ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAZ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512037", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512037", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "hematopoietic progenitor cell differentiation", "id": "GO:0002244", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002244", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSI6", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSI6", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BSI6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 468, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BSI6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BSI6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 168, "end_pos": 170 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480QAW8-1", "uniprot_ac": "A0A480QAW8", "uniprot_id": "A0A480QAW8_PIG", "mass": { "chemical_mass": 36347.0, "monoisotopic_mass": 36347.0 }, "refseq": { "ac": "XP_020934933", "name": "dnaJ homolog subfamily B member 6 isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934933" }, "gene_names": [ { "name": "DNAJB6", "type": "recommended", "evidence": [ { "id": "A0A480QAW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QAW8" } ] }, { "name": "DNAJB6", "type": "synonym", "evidence": [ { "id": "XP_020934933", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934933" } ] } ], "protein_names": [ { "name": "DnaJ heat shock protein family (Hsp40) member B6", "type": "synonym", "evidence": [ { "id": "A0A480QAW8", "database": "UniProtKB", "url": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480VMQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480VMQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U2F3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2F3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U2F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2F3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJP3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFK1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFK1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGSGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDLFEDPFEDFFGNRRTPRGSRSRGTGSFFSAFSGFPPFGGGFSSFDTGFTSFGSLGHGGLTSFSSTAFGGSGMGNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGVADEDAFEEECRRRGQTALPASTSARLLRPQKPASLPKHASHYTCEDEDEPSRPRATSTWEPPSVFSAGFKEGGKRKKQKQREESKKKKSTKGRP", "length": 326, "header": "tr|A0A480QAW8-1|A0A480QAW8_PIG Isoform 1 of DnaJ heat shock protein family (Hsp40) member B6 OS=Sus scrofa OX=9823 GN=DNAJB6 PE=1 SV=1 CANONICAL=A0A480QAW8-1" }, "isoforms": [ { "isoform_ac": "A0A286ZMD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QAW8/entry#A0A286ZMD9-1", "sequence": { "sequence": "MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGSGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDLFGFEEAASEELEPEEEAVEDSQSDEDSEALDVISSEELELLSDTEPSEGCSGGGGGSPSEDLEFVSSEDEAQASPGDPEELIEELLGEELPGEDGGPELLALLAPLPPLPRGTGLHHRKCM", "length": 235, "header": "tr|A0A286ZMD9-1|A0A480QAW8_PIG Computationally mapped isoform of DnaJ heat shock protein family (Hsp40) member B6 OS=Sus scrofa OX=9823 GN=DNAJB6 PE=1 SV=1 CANONICAL=A0A480QAW8-1" }, "locus": { "chromosome": "18", "start_pos": 1481309, "end_pos": 1472229, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106220.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106220.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079737.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079737.1" } ] } }, { "isoform_ac": "A0A286ZWP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QAW8/entry#A0A286ZWP6-1", "sequence": { "sequence": "MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGSGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDLFEDPFEDFFGNRRTPRGSRSRGTGSFFSAFSGFPPFGGGFSSFDTGFTSFGSLGHGGLTSFSSTAFGGSGMGNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGVADEDAFEEECRRRGQTALPQTSARLLRPQKPASLPKHASHYTCEDEDEPSRPRATSTWEPPSVFSAGFKEGGKRKKQKQREESKKKKSTKGRP", "length": 325, "header": "tr|A0A286ZWP6-1|A0A480QAW8_PIG Computationally mapped isoform of DnaJ heat shock protein family (Hsp40) member B6 OS=Sus scrofa OX=9823 GN=DNAJB6 PE=1 SV=3 CANONICAL=A0A480QAW8-1" }, "locus": { "chromosome": "18", "start_pos": 1481309, "end_pos": 1445753, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060196.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060196.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035930.3", "url": "https://www.ensembl.org/id/ENSSSCP00000035930.3" } ] } }, { "isoform_ac": "A0A287BEU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QAW8/entry#A0A287BEU6-1", "sequence": { "sequence": "MEKGEKGKREDRRRRHRRRQRRRAGAEETRPPPRRAFRRRLQRPRYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGSGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDLFEDPFEDFFGNRRTPRGSRSRGTGSFFSAFSGFPPFGGGFSSFDTGFTSFGSLGHGGLTSFSSTAFGGSGMGNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLDNK", "length": 264, "header": "tr|A0A287BEU6-1|A0A480QAW8_PIG Computationally mapped isoform of DnaJ heat shock protein family (Hsp40) member B6 OS=Sus scrofa OX=9823 GN=DNAJB6 PE=1 SV=3 CANONICAL=A0A480QAW8-1" }, "locus": { "chromosome": "18", "start_pos": 1499868, "end_pos": 1463457, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046197.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046197.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054604.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054604.2" } ] } }, { "isoform_ac": "A0A480QAW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QAW8/entry#A0A480QAW8-1", "sequence": { "sequence": "MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGSGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDLFEDPFEDFFGNRRTPRGSRSRGTGSFFSAFSGFPPFGGGFSSFDTGFTSFGSLGHGGLTSFSSTAFGGSGMGNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGVADEDAFEEECRRRGQTALPASTSARLLRPQKPASLPKHASHYTCEDEDEPSRPRATSTWEPPSVFSAGFKEGGKRKKQKQREESKKKKSTKGRP", "length": 326, "header": "tr|A0A480QAW8-1|A0A480QAW8_PIG Isoform 1 of DnaJ heat shock protein family (Hsp40) member B6 OS=Sus scrofa OX=9823 GN=DNAJB6 PE=1 SV=1 CANONICAL=A0A480QAW8-1" }, "locus": { "chromosome": "18", "start_pos": 1481309, "end_pos": 1445753, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070621.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070621.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063838.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063838.2" } ] } }, { "isoform_ac": "A0A480VMQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QAW8/entry#A0A480VMQ4-1", "sequence": { "sequence": "MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGSGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDLFGVVGDFHFQALRIYSQEKALLHGYYMYEVTAQPAGGFEEAASEELEPEEEAVEDSQSDEDSEALDVISSEELELLSDTEPSEGCSGGGGGSPSEDLEFVSSEDEAQASPGDPEELIEELLGEELPGEDGGPELLALLAPLPPLPRGTGLHHRKCM", "length": 270, "header": "tr|A0A480VMQ4-1|A0A480VMQ4_PIG Computationally mapped isoform of DnaJ heat shock protein family (Hsp40) member B6 OS=Sus scrofa OX=9823 GN=DNAJB6 PE=1 SV=1 CANONICAL=A0A480QAW8-1" }, "locus": { "chromosome": "18", "start_pos": 1481309, "end_pos": 1472229, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081002.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081002.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060421.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060421.1" } ] } }, { "isoform_ac": "A0A4X1U2F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QAW8/entry#A0A4X1U2F3-1", "sequence": { "sequence": "MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGSGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDLFEDPFEDFFGNRRTPRGSRSRGTGSFFSAFSGFPPFGGGFSSFDTGFTSFGSLGHGGLTSFSSTAFGGSGMGNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLDNK", "length": 241, "header": "tr|A0A4X1U2F3-1|A0A4X1U2F3_PIG Computationally mapped isoform of DnaJ heat shock protein family (Hsp40) member B6 OS=Sus scrofa OX=9823 GN=DNAJB6 PE=1 SV=1 CANONICAL=A0A480QAW8-1" }, "locus": { "chromosome": "18", "start_pos": 1481309, "end_pos": 1463457, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103374.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103374.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081136.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081136.1" } ] } }, { "isoform_ac": "A0A5G2QJP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QAW8/entry#A0A5G2QJP3-1", "sequence": { "sequence": "MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGSGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDLFDPFEDFFGNRRTPRGSRSRGTGSFFSAFSGFPPFGGGFSSFDTGFTSFGSLGHGGLTSFSSTAFGGSGMGNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGVADEDAFEEECRRRGQTALPASTSARLLRPQKPASLPKHASHYTCEDEDEPSRPRATSTWEPPSVFSAGVGKEISASGHADVCPGWTVLAWTWQGAGAKV", "length": 330, "header": "tr|A0A5G2QJP3-1|A0A480QAW8_PIG Computationally mapped isoform of DnaJ heat shock protein family (Hsp40) member B6 OS=Sus scrofa OX=9823 GN=DNAJB6 PE=1 SV=1 CANONICAL=A0A480QAW8-1" }, "locus": { "chromosome": "18", "start_pos": 1481309, "end_pos": 1449420, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090170.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090170.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064172.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064172.1" } ] } }, { "isoform_ac": "A0A8W4FFK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QAW8/entry#A0A8W4FFK1-1", "sequence": { "sequence": "MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGGSGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDLFGVADEDAFEEECRRRGQTALPQTSARLLRPQKPASLPKHASHYTCEDEDEPSRPRATSTWEPPSVFSAGFKEGGKRKKQKQREESKKKKSTKGRP", "length": 210, "header": "tr|A0A8W4FFK1-1|A0A480QAW8_PIG Computationally mapped isoform of DnaJ heat shock protein family (Hsp40) member B6 OS=Sus scrofa OX=9823 GN=DNAJB6 PE=1 SV=1 CANONICAL=A0A480QAW8-1" }, "locus": { "chromosome": "18", "start_pos": 1481309, "end_pos": 1445753, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092959.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092959.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078204.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078204.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZMD9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMD9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3371453", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371453", "resource": "Reactome", "description": "Regulation of HSF1-mediated heat shock response" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "unfolded protein binding", "id": "GO:0051082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051082", "evidence": [ { "database": "UniProtKB", "id": "A0A480QAW8", "url": "https://www.uniprot.org/uniprotkb/A0A480QAW8" } ], "pmid": "" }, { "name": "Hsp70 protein binding", "id": "GO:0030544", "url": 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{ "name": "negative regulation of inclusion body assembly", "id": "GO:0090084", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090084", "evidence": [ { "database": "UniProtKB", "id": "A0A480QAW8", "url": "https://www.uniprot.org/uniprotkb/A0A480QAW8" } ], "pmid": "" }, { "name": "nervous system process", "id": "GO:0050877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050877", "evidence": [ { "database": "UniProtKB", "id": "A0A480QAW8", "url": "https://www.uniprot.org/uniprotkb/A0A480QAW8" } ], "pmid": "" }, { "name": "regulation of protein localization", "id": "GO:0032880", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032880", "evidence": [ { "database": "UniProtKB", "id": "A0A480QAW8", "url": "https://www.uniprot.org/uniprotkb/A0A480QAW8" } ], "pmid": "" }, { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "A0A480QAW8", "url": "https://www.uniprot.org/uniprotkb/A0A480QAW8" } ], 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"categories": [ "Genome Annotation" ] }, { "id": "IPR001619", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001619", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027482", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027482", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036045", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036045", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043127", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043127", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157840", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157840", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2Q9I5", "url": "https://www.orthodb.org/?gene=A0A5G2Q9I5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11679", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11679", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00995", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00995", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-204005", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8980692", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020955562", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955562", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZQS7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZQS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQS7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A1S1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1S1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A1S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1S1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480TQM2", "url": "https://www.uniprot.org/uniprotkb/A0A480TQM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480TQM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TQM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9I5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2F3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2F3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2F3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8F9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8F9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8F9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8F9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F699", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F699", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F699-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F699-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6E4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6E4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6E4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FC86", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FC86-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC86-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHF4", "url": "https://www.uniprot.org/uniprotkb/F1SHF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHF4-1", "url": "https://www.uniprot.org/uniprotkb/F1SHF4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGVKMAAAAAASIRERQTVALKRMLNFNVPHVKNSAGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKEIVSYRAINRTDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGTETSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISAQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFAKMASAPASYGNTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLSQLGQK", "length": 641, "header": "tr|A0A480TQM2-1|A0A480TQM2_PIG Isoform 1 of Sec1 family domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SCFD1 PE=1 SV=1 CANONICAL=A0A480TQM2-1" }, "isoforms": [ { "isoform_ac": "A0A286ZQS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TQM2/entry#A0A286ZQS7-1", "sequence": { "sequence": "MAAAAAASIRERQTVALKRMLNFNVPHVKNSAGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKEIVSYRAINRTDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGTETSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISAQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFAKMASAPASYGNTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLSQLGQK", "length": 636, "header": "tr|A0A286ZQS7-1|A0A480TQM2_PIG Computationally mapped isoform of Sec1 family domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SCFD1 PE=1 SV=3 CANONICAL=A0A480TQM2-1" }, "locus": { "chromosome": "7", "start_pos": 68850960, "end_pos": 68742319, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047473.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047473.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033973.3", "url": "https://www.ensembl.org/id/ENSSSCP00000033973.3" } ] } }, { "isoform_ac": "A0A287A1S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TQM2/entry#A0A287A1S1-1", "sequence": { "sequence": "MVGVKMAAAAAASIRERQTVALKRMLNFNVPHVKNSAGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKEIVSYRGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGTETSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISAQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFAKMASAPASYGNTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLSQLGQK", "length": 611, "header": "tr|A0A287A1S1-1|A0A480TQM2_PIG Computationally mapped isoform of Sec1 family domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SCFD1 PE=1 SV=3 CANONICAL=A0A480TQM2-1" }, "locus": { "chromosome": "7", "start_pos": 68850975, "end_pos": 68742319, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062123.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062123.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037872.3", "url": "https://www.ensembl.org/id/ENSSSCP00000037872.3" } ] } }, { "isoform_ac": "A0A480TQM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TQM2/entry#A0A480TQM2-1", "sequence": { "sequence": "MVGVKMAAAAAASIRERQTVALKRMLNFNVPHVKNSAGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKEIVSYRAINRTDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGTETSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISAQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFAKMASAPASYGNTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLSQLGQK", "length": 641, "header": "tr|A0A480TQM2-1|A0A480TQM2_PIG Isoform 1 of Sec1 family domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SCFD1 PE=1 SV=1 CANONICAL=A0A480TQM2-1" }, "locus": { "chromosome": "7", "start_pos": 68850975, "end_pos": 68742319, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082820.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082820.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070920.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070920.2" } ] } }, { "isoform_ac": "A0A5G2Q9I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TQM2/entry#A0A5G2Q9I5-1", "sequence": { "sequence": "MVGVKMAAAAAASIRERQTVALKRMLNFNVPHVKNSAGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKEIVSYRAINRTDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGTETSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISAQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFAKMASAPASYGNTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLPAASVLTWGPWHHPPWITVREDLYQVHSY", "length": 664, "header": "tr|A0A5G2Q9I5-1|A0A480TQM2_PIG Computationally mapped isoform of Sec1 family domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SCFD1 PE=1 SV=2 CANONICAL=A0A480TQM2-1" }, "locus": { "chromosome": "7", "start_pos": 68850975, "end_pos": 68716847, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080155.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080155.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060608.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060608.2" } ] } }, { "isoform_ac": "A0A5G2R2F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TQM2/entry#A0A5G2R2F3-1", "sequence": { "sequence": "MVGVKMAAAAAASIRERQTVALKRMLNFNVPHVKNSAGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKEIVSYRAINRTDITDTEMETVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGTETSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISAQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFAKMASAPASYGNTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLSQLGQK", "length": 607, "header": "tr|A0A5G2R2F3-1|A0A480TQM2_PIG Computationally mapped isoform of Sec1 family domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SCFD1 PE=1 SV=1 CANONICAL=A0A480TQM2-1" }, "locus": { "chromosome": "7", "start_pos": 68850975, "end_pos": 68742319, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079321.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079321.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068377.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068377.1" } ] } }, { "isoform_ac": "A0A5G2R8F9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TQM2/entry#A0A5G2R8F9-1", "sequence": { "sequence": "MAAAAAASIRERQTVALKRMLNFNVPHVKNSAGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKEIVSYRAINRTDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGTETSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISAQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFAKMASAPASYGNTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEGKQGKHILYGCSELFNATQFIKQLSQLGQK", "length": 614, "header": "tr|A0A5G2R8F9-1|A0A480TQM2_PIG Computationally mapped isoform of Sec1 family domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SCFD1 PE=1 SV=2 CANONICAL=A0A480TQM2-1" }, "locus": { "chromosome": "7", "start_pos": 68850960, "end_pos": 68742319, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070679.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070679.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072603.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072603.2" } ] } }, { "isoform_ac": "A0A8W4F699-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TQM2/entry#A0A8W4F699-1", "sequence": { "sequence": "MAAAAAASIRERQTVALKRMLNFNVPHVKNSAGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIPDVPAVYFVMPTEENIDRLCQVFDQYLNFITLEDDMFVLCNQNKEIVSYRAINRTDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGTETSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISAQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFAKMASAPASYGNTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLSQLGQK", "length": 595, "header": "tr|A0A8W4F699-1|A0A480TQM2_PIG Computationally mapped isoform of Sec1 family domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SCFD1 PE=1 SV=1 CANONICAL=A0A480TQM2-1" }, "locus": { "chromosome": "7", "start_pos": 68850960, "end_pos": 68742319, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101346.1", "url": 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"ENSSSCP00000076873.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076873.1" } ] } }, { "isoform_ac": "F1SHF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TQM2/entry#F1SHF4-1", "sequence": { "sequence": "MCLMLKTALENQYGRLLHSDRDPIPDVPAVYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKEIVSYRAINRTDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGTETSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISAQQAPSEADLEQYKKALTDAGCNLNPLQYIKQWKAFAKMASAPASYGNTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSELFNATQFIKQLSQLGQK", "length": 583, "header": "tr|F1SHF4-1|A0A480TQM2_PIG Computationally mapped isoform of Sec1 family domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SCFD1 PE=1 SV=3 CANONICAL=A0A480TQM2-1" }, "locus": { "chromosome": "7", "start_pos": 68845532, "end_pos": 68742319, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002206.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002206.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002154.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002154.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda 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"MSRLGDVEPRVIDDHMLKQAVGEQGPQEEAGQLAKQEGVLFKDVLSLQLDFQKTGSEGMDMKRFCPHSRSTLPTATPDILRIDNLWPFENLRKLQLDNNVIEKIEGLERLTRLVWLDLSFNNIEAIEGLDSLENLEDLSLFNNRISKVDSLDALVRLQVLSLGNNRIANLTNVIYLRRFKDLRTLSLAGNPVAEQDDYKMFVCAYLPDLVYLDFRRIDDHTKELAEAKHQYSLDELKHRENLLQAQQEDEQARREELEEHKAAFVENLNGPFLFESMYAEDVEGSKLACLPGVGELLETYRDKFVIICLNLFECGLKQQEKRKAELDTFSQCVQEAIQENQEQGRQRITKFEETHLLSLSAIRDASELTTLETRLVACRERVAELFNSLMMLEMQLAEQLEETISLFERNIADLVGLFVENVQSLMAQCRDLENHHHEKLLEAAINTLEKTVKGELDEDLPDDVRALFVDKDTLVNAVGASHDVHLLKIDSREDELVTKVHAWCTHLLDQIHRDEIARNRKRVKEISQYADHAQRELDALECAELLD", "length": 547, "header": "tr|A0A287ABI6-1|A0A480MS13_PIG Computationally mapped isoform of Dynein regulatory complex subunit 3 OS=Sus scrofa OX=9823 GN=DRC3 PE=3 SV=3 CANONICAL=A0A480MS13-1" }, "locus": { "chromosome": "12", "start_pos": 60650692, "end_pos": 60633678, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051175.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051175.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041364.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041364.3" } ] } }, { "isoform_ac": "A0A480MS13-1", "url": "https://www.uniprot.org/uniprotkb/A0A480MS13/entry#A0A480MS13-1", "sequence": { "sequence": "MSRLGDVEPRVIDDHMLKQAVGEQGPQEEAGQLAKQEGVLFKDVLSLQLDFQNILRIDNLWPFENLRKLQLDNNVIEKIEGLERLTRLVWLDLSFNNIEAIEGLDSLENLEDLSLFNNRISKVDSLDALVRLQVLSLGNNRIANLTNVIYLRRFKDLRTLSLAGNPVAEQDDYKMFVCAYLPDLVYLDFRRIDDHTKELAEAKHQYSLDELKHRENLLQAQQEDEQARREELEEHKAAFVENLNGPFLFESMYAEDVEGSKLACLPGVGELLETYRDKFVIICLNLFECGLKQQEKRKAELDTFSQCVQEAIQENQEQGRQRITKFEETHLLSLSAIRDASELTTLETRLVACRERVAELFNSLMMLEMQLAEQLEETISLFERNIADLVGLFVENVQSLMAQCRDLENHHHEKLLEAAINTLEKTVKGELDEDLPDDVRALFVDKDTLVNAVGASHDVHLLKIDSREDELVTKVHAWCTHLLDQIHRDEIARNRKRVKEISQYADHAQRELDALECAELLD", "length": 522, "header": "tr|A0A480MS13-1|A0A480MS13_PIG Isoform 1 of Dynein regulatory complex subunit 3 OS=Sus scrofa OX=9823 GN=DRC3 PE=3 SV=1 CANONICAL=A0A480MS13-1" }, "locus": { "chromosome": "12", "start_pos": 60650692, 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A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZRH2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRH2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "A0A480MS13", "url": "https://www.uniprot.org/uniprotkb/A0A480MS13" } ], "pmid": "" }, { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "A0A480MS13", "url": "https://www.uniprot.org/uniprotkb/A0A480MS13" } ], "pmid": "" }, { "name": "axonemal doublet microtubule", "id": "GO:0097545", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097545", "evidence": [ { "database": "UniProtKB", "id": "A0A480MS13", "url": "https://www.uniprot.org/uniprotkb/A0A480MS13" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 144, "end_pos": 146 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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Classification" ] }, { "id": "PTHR11977:SF51", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11977:SF51", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00626", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00626", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23598", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23598", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020923641", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923641", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZRM3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZRM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BPH8", "url": "https://www.uniprot.org/uniprotkb/A0A287BPH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BPH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BPH8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480HZP7", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480HZP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEATGVLPFVRGVDLSGNDFKGGYFPENVKAMTSLRWLKLNRTGLCYLPEELAALQKLEHLSVSHNHLTTLHGDLSSLPSLRAIVARANSLKNSGVPDDIFKLDDLSVLDLSYNQLTECPRELENAKNMLVLNLSHNSIESIPNQLFINLTDLLYLDLGENRLESLPPQMRRLVHLQTLVLNGNPLLHAQLRQLPALTALQTLHLRNTQRTQSNLPTSLEGLSNLADVDLSCNDLTRVPECLYTLPSLRRLNLSSNQITELSLCIDQWVHVETLNLSRNQLTSLPSAICKLTKLKRLYLNSNKLDFDGLPSGIGKLASLEEFMAANNNLELIPESLCRCTKLRKLVLNKNRLVTLPEAVHFLTEIEVLDVRENPSLVMPPKPADRAAEWYNIDFSLQNQLRLAGASPATVAAAAAAGSGPKDPLARKMRLRRRKDSAQDDQAKQVLKGMSDVAQEKNRKQEEGADARAPGAKVRRWDQGLEKPRLDYSEFFTEDVGQLPGLTIWQIENFVPVLVEEALHGKFYEADCYIVLKTFLDDSGSLSWAIYYWIGGEATLDKKACSAIHAVNLRNYLGAECRTVREEMGDESEEFLQVFDSDISYVEGGTASGFYTVEDTHYVTRMYRVYGKKNIKLEPVPLKGASLDPRFVFLLDRGLDIDVWRGAQATLSSTTKARLFAEKINKNERKGKAEISLLVQGQEPPEFWEVLGGEPAEIKKHVPDDFWPPQPKLYKVGLGLGYLELPQINYKLSVEHKTRPKVELMPRMRLLQSLLDTRCVYILDCWSDVFIWLGRKSPRLVRAAALKLGQELCGMLHRPRHATVSRSLEGTEAQVFKAKFKNWDDVLTVDYTRNAEAVLQGPGLAGKVKRDAEKKDQMKADLTALFLPRQPPMALAEAEQLMEEWNEDLDGMEGFVLEGKKFARLPEEEFGHFYTQDCYVFLCRYWVPVEYEEEEERKEENEDEKAGAEGEDGEAAAAKQPEEDFQCVVYFWQGREASTMGWLTFTFSLQKKFESLFPGKLEVVRMTQQQENPKFLSHFKRKFVIHRGRRRAAQGAPQPSLYQIRTNGSALCTRCIQINTDSGLLNSEFCFILKVPFESEDNQGIVYAWVGRASDPDEAKLAEDILNSMFEASYSKQVINEGEEPENFFWVGIGAQKPYDDDAEYMKHTRLFRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQVYIQHLRSKEHERPRRLRLVRKGNEQHAFTRCFHAWSTFRKALA", "length": 1269, "header": "tr|A0A480HZP7-1|A0A480HZP7_PIG Isoform 1 of Protein flightless-1 homolog OS=Sus scrofa OX=9823 GN=FLII PE=4 SV=1 CANONICAL=A0A480HZP7-1" }, "isoforms": [ { "isoform_ac": "A0A286ZRM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7/entry#A0A286ZRM3-1", "sequence": { "sequence": "MEATGVLPFVRGVDLSGNDFKGGYFPENVKAMTSLRWLKLNRTGLCYLPEELAALQKLEHLSVSHNHLTTLHGDLSSLPSLRAIVARANSLKNSGVPDDIFKLDDLSVLDLSYNQLTECPRELENAKNMLVLNLSHNSIESIPNQLFINLTDLLYLDLGENRLESLPPQMRRLVHLQTLVLNGNPLLHAQLRQLPALTALQTLHLRNTQRTQSNLPTSLEGLSNLADVDLSCNDLTRVPECLYTLPSLRRLNLSSNQITELSLCIDQWVHVETLNLSRNQLTSLPSAICKLTKLKRLYLNSNKLDFDGLPSGIGKLASLEEFMAANNNLELIPESLCRCTKLRKLVLNKNRLVTLPEAVHFLTEIEVLDVRENPSLVMPPKPADRAAEWYNIDFSLQNQLRLAGASPATVAAAAAAGSGPKDPLARKMRLRRRKDSAQDDQAKQVLKGMSDVAQEKNRKQEEGADARAPGAKVRRWDQGLEKPRLDYSEFFTEDVGQLPGLTIWQIENFVPVLVEEALHGKFYEADCYIVLKTFLDDSGSLSWAIYYWIGGEATLDKKACSAIHAVNLRNYLGAECRTVREEMGDESEEFLQVFDSDISYVEGGTASGFYTVEDTHYVTRMYRVYGKKNIKLEPVPLKGASLDPRFVFLLDRGLDIDVWRGAQATLSSTTKARLFAEKINKNERKGKAEISLLVQGQEPPEFWEVLGGEPAEIKKHVPDDFWPPQPKLYKVGLGLGYLELPQINYKLSVEHKTRPKVELMPRMRLLQSLLDTRCVYILDCWSDVFIWLGRKSPRLVRAAALKLGQELCGMLHRPRHATVSRSLEGTEAQVFKAKFKNWDDVLTVDYTRNAEAVLQGPGLAGKVKRDAEKKDQMKADLTALFLPRQPPMALAEAEQLMEEWNEDLDGMEGFVLEGKKFARLPEEEFGHFYTQDCYVFLCRYWVPVEYEEEEERKEENEDEKAGAEGEDGEAAAAKQPEEDFQCVVYFWQGREASTMGWLTFTFSLQKKFESLFPGKLEVVRMTQQQENPKFLSHFKRKFVIHRGRRRAAQGAPQPSLYQIRTNGSALCTRCIQINTDSGLLNSEFCFILKVPFESEDNQGIVYAWVGRASDPDEAKLAEDILNSMFEASYSKQVLQREGLLRGDGEVLRLLPG", "length": 1152, "header": "tr|A0A286ZRM3-1|A0A480HZP7_PIG Computationally mapped isoform of Protein flightless-1 homolog OS=Sus scrofa OX=9823 GN=FLII PE=4 SV=2 CANONICAL=A0A480HZP7-1" }, "locus": { "chromosome": "12", "start_pos": 60486757, "end_pos": 60475787, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051763.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051763.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034129.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034129.2" } ] } }, { "isoform_ac": "A0A287BPH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7/entry#A0A287BPH8-1", "sequence": { "sequence": "MEATGVLPFVRGVDLSGNDFKGGYFPENVKAMTSLRWLKLNRTGLCYLPEELAALQKLEHLSVSHNHLTTLHGDLSSLPSLRAIVARANSLKNSGVPDDIFKLDDLSVLDLSYNQLTECPRELENAKNMLVLNLSHNRQLPALTALQTLHLRNTQRTQSNLPTSLEGLSNLADVDLSCNDLTRVPECLYTLPSLRRLNLSSNQITELSLCIDQWVHVETLNLSRNQLTSLPSAICKLTKLKRLYLNSNKLDFDGLPSGIGKLASLEEFMAANNNLELIPESLCRCTKLRKLVLNKNRLVTLPEAVHFLTEIEVLDVRENPSLVMPPKPADRAAEWYNIDFSLQNQLRLAGASPATVAAAAAGSGPKDPLARKMRLRRRKDSAQDDQAKQVLKGMSDVAQEKNRKQEEGADARAPGAKVRRWDQGLEKPRLDYSEFFTEDVGQLPGLTIWQIENFVPVLVEEALHGKFYEADCYIVLKTFLDDSGSLSWAIYYWIGGEATLDKKACSAIHAVNLRNYLGAECRTVREEMGDESEEFLQVFDSDISYVEGGTASGFYTVEDTHYVTRMYRVYGKKNIKLEPVPLKGASLDPRFVFLLDRGLDIDVWRGAQATLSSTTKARLFAEKINKNERKGKAEISLLVQGQEPPEFWEVLGGEPAEIKKHVPDDFWPPQPKLYKVGLGLGYLELPQINYKLSVEHKTRPKVELMPRMRLLQSLLDTRCVYILDCWSDVFIWLGRKSPRLVRAAALKLGQELCGMLHRPRHATVSRSLEGTEAQVFKAKFKNWDDVLTVDYTRNAEAVLQGPGLAGKVKRDAEKKDQMKADLTALFLPRQPPMALAEAEQLMEEWNEDLDGMEGFVLEGKKFARLPEEEFGHFYTQDCYVFLCRYWVPVEYEEEEERKEENEDEKAGAEGEDGEAAAAKQPEEDFQCVVYFWQGREASTMGWLTFTFSLQKKFESLFPGKLEVVRMTQQQENPKFLSHFKRKFVIHRGRRRAAQGAPQPSLYQIRTNGSALCTRCIQINTDSGLLNSEFCFILKVPFESEDNQGIVYAWVGRASDPDEAKLAEDILNSMFEASYSKQVINEGEEPENFFWVGIGAQKPYDDDAEYMKHTRLFRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQVYIQHLRSKEHERPRRLRLVRKGNEQHAFTRCFHAWSTFRKALA", "length": 1214, "header": "tr|A0A287BPH8-1|A0A480HZP7_PIG Computationally mapped isoform of Protein flightless-1 homolog OS=Sus scrofa OX=9823 GN=FLII PE=4 SV=2 CANONICAL=A0A480HZP7-1" }, "locus": { "chromosome": "12", "start_pos": 60487180, "end_pos": 60475787, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046514.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046514.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058522.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058522.2" } ] } }, { "isoform_ac": "A0A480HZP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7/entry#A0A480HZP7-1", "sequence": { "sequence": "MEATGVLPFVRGVDLSGNDFKGGYFPENVKAMTSLRWLKLNRTGLCYLPEELAALQKLEHLSVSHNHLTTLHGDLSSLPSLRAIVARANSLKNSGVPDDIFKLDDLSVLDLSYNQLTECPRELENAKNMLVLNLSHNSIESIPNQLFINLTDLLYLDLGENRLESLPPQMRRLVHLQTLVLNGNPLLHAQLRQLPALTALQTLHLRNTQRTQSNLPTSLEGLSNLADVDLSCNDLTRVPECLYTLPSLRRLNLSSNQITELSLCIDQWVHVETLNLSRNQLTSLPSAICKLTKLKRLYLNSNKLDFDGLPSGIGKLASLEEFMAANNNLELIPESLCRCTKLRKLVLNKNRLVTLPEAVHFLTEIEVLDVRENPSLVMPPKPADRAAEWYNIDFSLQNQLRLAGASPATVAAAAAAGSGPKDPLARKMRLRRRKDSAQDDQAKQVLKGMSDVAQEKNRKQEEGADARAPGAKVRRWDQGLEKPRLDYSEFFTEDVGQLPGLTIWQIENFVPVLVEEALHGKFYEADCYIVLKTFLDDSGSLSWAIYYWIGGEATLDKKACSAIHAVNLRNYLGAECRTVREEMGDESEEFLQVFDSDISYVEGGTASGFYTVEDTHYVTRMYRVYGKKNIKLEPVPLKGASLDPRFVFLLDRGLDIDVWRGAQATLSSTTKARLFAEKINKNERKGKAEISLLVQGQEPPEFWEVLGGEPAEIKKHVPDDFWPPQPKLYKVGLGLGYLELPQINYKLSVEHKTRPKVELMPRMRLLQSLLDTRCVYILDCWSDVFIWLGRKSPRLVRAAALKLGQELCGMLHRPRHATVSRSLEGTEAQVFKAKFKNWDDVLTVDYTRNAEAVLQGPGLAGKVKRDAEKKDQMKADLTALFLPRQPPMALAEAEQLMEEWNEDLDGMEGFVLEGKKFARLPEEEFGHFYTQDCYVFLCRYWVPVEYEEEEERKEENEDEKAGAEGEDGEAAAAKQPEEDFQCVVYFWQGREASTMGWLTFTFSLQKKFESLFPGKLEVVRMTQQQENPKFLSHFKRKFVIHRGRRRAAQGAPQPSLYQIRTNGSALCTRCIQINTDSGLLNSEFCFILKVPFESEDNQGIVYAWVGRASDPDEAKLAEDILNSMFEASYSKQVINEGEEPENFFWVGIGAQKPYDDDAEYMKHTRLFRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQVYIQHLRSKEHERPRRLRLVRKGNEQHAFTRCFHAWSTFRKALA", "length": 1269, "header": "tr|A0A480HZP7-1|A0A480HZP7_PIG Isoform 1 of Protein flightless-1 homolog OS=Sus scrofa OX=9823 GN=FLII PE=4 SV=1 CANONICAL=A0A480HZP7-1" }, "locus": { "chromosome": "12", "start_pos": 60487180, "end_pos": 60475787, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061513.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061513.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047093.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047093.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZRM3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRM3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110256127", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256127", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z2P4-1", "protein_name": "Protein flightless-1 homolog", "gene_name": "FLII", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAATGVLPFVRGVDLSGNDFKGGYFPEHVKAMTSLRWLKLNHTGLCYLPEELAALQKLEHLSVSHNSLTTLHGELSSLPCLRAIVARANSLKNSGVPDDIFQLEDLSVLDLSRNDLTECPRELENAKNMLVLNLGHNRIETIPNQLFINLTDLLYLDLSNNKLESLPPQMRRLVHLQTLILNDNPLLHAQLRQLPAMTALQTLHLRSTQRTQSNLPTSLESLVNLADVDLSCNNLSRVPECLYTLGSLRRLNLSSNQITELSLCIDQWTQLETLNLSRNELTSLPSAICKLTKLKKMYLNSNKLDFDGIPSGIGKLTNLEEFMAANNNLELIPESLCRCSKLRKLVLNKNRLVTLPEAIHFLTDMEVLDVRENPNLVMPPKPAERTSEWYNIDFSLQNQLRLAGASPATVAAAAAGSSTKDPLARKMRLRRRKDSAQDDQAKQVLKGMSDVAQEKNKKIEESGEAKAPDLKARRWDQGLEKPQLDYSEFFSEDVGQLPGLSIWQIENFVPTLVDDAFYGKFYEADCYIVLKTFLDENGSLSWEIYYWIGQEATLDKKACSAIHAVNLRNYLGAECRCIREEMGDESDEFLQVFDNDISYIEGGTASGFFTVEDTQYVTRLYRVYGKKNIKLEPVALKGTSLDPRFVFLLDHGLELFVWRGSQATLSSTTKARLFAEKINKNERKGKAEITLLYQGQESPEFWEVLGGQPEEIQPCVPDDFQPHKPKLYKVGLGLGYLELPQINYKLSVEHKKRLKADLMPEMRLLQSLLDTKNVYILDCWSDVFIWIGRKSSRLVRAAALKLSQELCGMLHRPKHAMVTRNLEGTECQVFKSKFKNWDDVLQVDYTRNAENVLQEGGLAGKVRKDAEKKDQMKADLTALFLPRQPPMPLSEAEQLMEEWNEDLDGMEGFVLEGKKFARLPEEEFGHFHTHDCYVFLCRYWVPVEYEEEEEKKKKSEGKEDEEGEEEEEDKQPEEDFQCIVYFWQGREASNMGWLTFTFSLQKKFESLFPGKLEVVRMTQQQENPKFLSHFKRRFVIHRGKRKEKTIPPQPSLYHIRTNGGALCTRCIQINTDSGLLNSEFCFILKVPFESTDNQGIVYTWVGRAADPDEAKLAEDIMNNMFDDSYSKQVINEGEEPENFFWVGIGSQKPYDEDAEYMKHSRLFRCSNEKGYFAVSEKCSDFCQDDLADDDIMLLDNGKEVYMWVGTQTSQVEIKLSLKACQVYIQHMRSKDPTRPRKLRLVRKGNEPWPFTRCFHAWSVFRKPPA", "length": 1265 }, "evidence": [ { "id": "A0A480HZP7", "url": "https://omabrowser.org/oma/group/A0A480HZP7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F7F0E5-1", "protein_name": "Protein flightless-1 homolog", "gene_name": "Flii", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEATGVLPFVRGVDLSGNDFKGGYFPENVKAMTSLRWLKLNRTGLCYLPEELAALQKLEHLSVSHNNLTTLHGELSSLPSLRAIVARANSLKNSGVPDDIFKLDDLSVLDLSHNQLTECPRELENAKNMLVLNLSHNSIDSIPNQLFINLTDLLYLDLSENRLESLPPQMRRLVHLQTLVLNGNPLLHAQLRQLPAMMALQTLHLRNTQRTQSNLPTSLEGLSNLSDVDLSCNDLTRVPECLYTLPNLHRLNLSSNQIAELSLCIDQWVHLETLNLSRNQLTSLPSAICKLTKLKKLYLNSNKLDFDGLPSGIGKLTSLEEFMAANNNLELIPESLCRCPKLRKLVLNKNRLVTLPEAIHFLTEIEVLDVRENPSLVMPPKPADHTAEWYNIDFSLQNQLRLAGASPATVAAAAAVGSGSKDPLARKMRLRRRKDSAQDVQAKQVLKGMSDVAQEKNKNQEESTDARAPGGKVRRWDQGLEKPRLDYSEFFTEDVGQLPGLTIWQIENFVPVLVEEAFHGKFYEADCYIVLKTFLDDSGSLNWEIYYWIGGEATLDKKACSAIHAVNLRNYLGAECRTAREEMGDESEGFLQVFDNDISYIEGGTASGFYTVEDTHYVTRMYRVYGKKNIKLEPVPLKGTSLDPRFVFLLDQGLDIYVWRGAQATLSNTTKARLFAEKMNKNERKGKAEITLLVQGQEPPEFWDVLGGEPSEIKKHVPDDFWPPQPKLYKVGLGLGYLELPQINYKLSVEHKKRPKVELMPGMRLLQSLLDTRCVYILDCWSDVFIWLGRKSPRLVRAAALKLGQELCGMLHRPRHTVVSRSLEGTEAQVFKAKFKNWDDVLTVDYTRNAEAVLQGPGISGKVKRDTEKKDQMKADLTALFLPRQPPMPLAEAEQLMEEWNEDLDGMEGFVLEGRKFTRLAEEEFGHFYTQDCYVFLCRYWVPVEYEEEEKPEDKEGKASAEGREEEEAAAETEEKQPEEDFQCIVYFWQGREASNMGWLTFTFSLQKKFESLFPGKLEVVRMTQQQENPKFLSHFKRKFIIHRGKRKVTQTLQPTLYQIRTNGSALCTRCIQINTDSSLLNSEFCFILKVPFESEDNQGIVYAWVGRASDPDEAKLAEDILNTMFDPSYSKQVINEGEEPENFFWVGIGAQKPYDDDAEYMKHTRLFRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQVYIQHTRSKEHERPRRLRLVRKGNEQRAFTRCFHAWSTFRQAPA", "length": 1270 }, "evidence": [ { "id": "A0A480HZP7", "url": "https://omabrowser.org/oma/group/A0A480HZP7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q13045-1", "protein_name": "Protein flightless-1 homolog", "gene_name": "FLII", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEATGVLPFVRGVDLSGNDFKGGYFPENVKAMTSLRWLKLNRTGLCYLPEELAALQKLEHLSVSHNNLTTLHGELSSLPSLRAIVARANSLKNSGVPDDIFKLDDLSVLDLSHNQLTECPRELENAKNMLVLNLSHNSIDTIPNQLFINLTDLLYLDLSENRLESLPPQMRRLVHLQTLVLNGNPLLHAQLRQLPAMTALQTLHLRSTQRTQSNLPTSLEGLSNLADVDLSCNDLTRVPECLYTLPSLRRLNLSSNQITELSLCIDQWVHVETLNLSRNQLTSLPSAICKLSKLKKLYLNSNKLDFDGLPSGIGKLTNLEEFMAANNNLELVPESLCRCPKLRKLVLNKNHLVTLPEAIHFLTEIEVLDVRENPNLVMPPKPADRAAEWYNIDFSLQNQLRLAGASPATVAAAAAAGSGPKDPMARKMRLRRRKDSAQDDQAKQVLKGMSDVAQEKNKKQEESADARAPSGKVRRWDQGLEKPRLDYSEFFTEDVGQLPGLTIWQIENFVPVLVEEAFHGKFYEADCYIVLKTFLDDSGSLNWEIYYWIGGEATLDKKACSAIHAVNLRNYLGAECRTVREEMGDESEEFLQVFDNDISYIEGGTASGFYTVEDTHYVTRMYRVYGKKNIKLEPVPLKGTSLDPRFVFLLDRGLDIYVWRGAQATLSSTTKARLFAEKINKNERKGKAEITLLVQGQELPEFWEALGGEPSEIKKHVPEDFWPPQPKLYKVGLGLGYLELPQINYKLSVEHKQRPKVELMPRMRLLQSLLDTRCVYILDCWSDVFIWLGRKSPRLVRAAALKLGQELCGMLHRPRHATVSRSLEGTEAQVFKAKFKNWDDVLTVDYTRNAEAVLQSPGLSGKVKRDAEKKDQMKADLTALFLPRQPPMSLAEAEQLMEEWNEDLDGMEGFVLEGKKFARLPEEEFGHFYTQDCYVFLCRYWVPVEYEEEEKKEDKEEKAEGKEGEEATAEAEEKQPEEDFQCIVYFWQGREASNMGWLTFTFSLQKKFESLFPGKLEVVRMTQQQENPKFLSHFKRKFIIHRGKRKAVQGAQQPSLYQIRTNGSALCTRCIQINTDSSLLNSEFCFILKVPFESEDNQGIVYAWVGRASDPDEAKLAEDILNTMFDTSYSKQVINEGEEPENFFWVGIGAQKPYDDDAEYMKHTRLFRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQVYIQHMRSKEHERPRRLRLVRKGNEQHAFTRCFHAWSAFCKALA", "length": 1269 }, "evidence": [ { "id": "A0A480HZP7", "url": "https://omabrowser.org/oma/group/A0A480HZP7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q24020-1", "protein_name": "Protein flightless-1", "gene_name": "fliI", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": 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"length": 1256 }, "evidence": [ { "id": "A0A480HZP7", "url": "https://omabrowser.org/oma/group/A0A480HZP7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9JJ28-1", "protein_name": "Protein flightless-1 homolog", "gene_name": "Flii", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEATGVLPFVRGVDLSGNDFKGGYFPENVKAMTSLRWLKLNRTGLCYLPEELAALQKLEHLSVSHNHLTTLHGELSSLPSLRAIVARANSLKNSGVPDDIFKLDDLSVLDLSHNQLTECPRELENAKNMLVLNLSHNGIDSIPNQLFINLTDLLYLDLSENRLESLPPQMRRLVHLQTLVLNGNPLLHAQLRQLPAMMALQTLHLRNTQRTQSNLPTSLEGLSNLSDVDLSCNDLTRVPECLYTLPSLRRLNLSSNQIAELSLCIDQWVHLETLNLSRNQLTSLPSAICKLTKLKKLYLNSNKLDFDGLPSGIGKLTSLEEFMAANNNLELIPESLCRCPKLKKLVLNKNRLVTLPEAIHFLTEIQVLDVRENPSLVMPPKPADRTAEWYNIDFSLQNQLRLAGASPATVAAAAAVGSGSKDPLARKMRLRRRKDSAQDVQAKQVLKGMSDVAQEKNKNQEESIDARAPGGKVRRWDQGLEKPRLDYSEFFTEDVGQLPGLTIWQIENFVPVLVEEAFHGKFYEADCYIVLKTFLDDSGSLNWEIYYWIGGEATLDKKACSAIHAVNLRNYLGAECRTVREEMGDESEEFLQVFDNDISYIEGGTASGFYTVEDTHYVTRMYRVYGKKNIKLEPVPLKGSSLDPRFVFLLDQGLDIYVWRGAQATLSNTTKARLFAEKINKNERKGKAEITLLVQGQEPPGFWDVLGGEPSEIKNHVPDDFWPPQPKLYKVGLGLGYLELPQINYKLSVEHKKRPKVELMPGMRLLQSLLDTRCVYILDCWSDVFIWLGRKSPRLVRAAALKLGQELCGMLHRPRHTVVSRSLEGTEAQVFKAKFKNWDDVLTVDYTRNAEAVLQGQGLSGKVKRDTEKTDQMKADLTALFLPRQPPMPLAEAEQLMEEWNEDLDGMEGFVLEGRKFTRLPEEEFGHFYTQDCYVFLCRYWVPVEYEEEEKTEDKEGKASAEAREGEEAAAEAEEKQPEEDFQCIVYFWQGREASNMGWLTFTFSLQKKFESLFPGKLEVVRMTQQQENPKFLSHFKRKFIIHRGKRKVTQGTLQPTLYQIRTNGSALCTRCIQINTDSSLLNSEFCFILKVPFESEDNQGIVYAWVGRASDPDEAKLAEDILNTMFDASYSKQVINEGEEPENFFWVGIGAQKPYDDDAEYMKHTRLFRCSNEKGYFAVTEKCSDFCQDDLADDDIMLLDNGQEVYMWVGTQTSQVEIKLSLKACQVYIQHTRSKEHERPRRLRLVRKGNEQRAFTRCFHAWSTFRQAPA", "length": 1271 }, "evidence": [ { "id": "A0A480HZP7", "url": "https://omabrowser.org/oma/group/A0A480HZP7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "A0A480HZP7", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7" } ], "pmid": "" }, { "name": "phosphatidylinositol-4,5-bisphosphate binding", "id": "GO:0005546", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005546", "evidence": [ { "database": "UniProtKB", "id": "A0A480HZP7", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480HZP7", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A480HZP7", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7" } ], "pmid": "" }, { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "A0A480HZP7", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7" } ], "pmid": "" }, { "name": "brush border", "id": "GO:0005903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005903", "evidence": [ { "database": "UniProtKB", "id": "A0A480HZP7", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A0A480HZP7", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7" } ], "pmid": "" }, { "name": "podosome", "id": "GO:0002102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002102", "evidence": [ { "database": "UniProtKB", "id": "A0A480HZP7", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A480HZP7", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7" } ], "pmid": "" }, { "name": "barbed-end actin filament capping", "id": "GO:0051016", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051016", "evidence": [ { "database": "UniProtKB", "id": "A0A480HZP7", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7" } ], "pmid": "" }, { "name": "actin polymerization or depolymerization", "id": "GO:0008154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008154", "evidence": [ { "database": "UniProtKB", "id": "A0A480HZP7", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7" } ], "pmid": "" }, { "name": "sarcomere organization", "id": "GO:0045214", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045214", "evidence": [ { "database": "UniProtKB", "id": "A0A480HZP7", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7" } ], "pmid": "" }, { "name": "actin filament severing", "id": "GO:0051014", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051014", "evidence": [ { "database": "UniProtKB", "id": "A0A480HZP7", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7" } ], "pmid": "" }, { "name": "myofibril assembly", "id": "GO:0030239", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030239", "evidence": [ { "database": "UniProtKB", "id": "A0A480HZP7", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1062, "end_pos": 1064, "annotation": "n_glycosylation_sequon" }, { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 275, "end_pos": 277, "annotation": "n_glycosylation_sequon" }, { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480HZP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480HZP7" }, { "id": "PF23598", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23598" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Disease resistance R13L4/SHOC-2-like LRR", "eco_id": "ECO_0000259", "start_pos": 242, "end_pos": 348, "start_aa": "Leu", "end_aa": "Asn", 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"end_pos": 277 }, { "start_pos": 41, "end_pos": 43 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A481DFA0-1", "uniprot_ac": "A0A481DFA0", "uniprot_id": "A0A481DFA0_PIG", "mass": { "chemical_mass": 13154.0, "monoisotopic_mass": 13154.0 }, "refseq": {}, "gene_names": [ { "name": "FAM241B", "type": "recommended", "evidence": [ { "id": "A0A481DFA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481DFA0" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 241 member B", "type": "synonym", "evidence": [ { "id": "A0A481DFA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481DFA0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A481DFA0", "url": "https://www.uniprot.org/uniprotkb/A0A481DFA0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM241B", "url": "https://www.uniprot.org/uniprotkb/A0A481DFA0", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000040498", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040498", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027953", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027953", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LIYIVSH", "url": "https://omabrowser.org/oma/group/LIYIVSH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33690", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33690", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33690:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33690:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15378", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15378", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZSN4", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZSN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSN4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481DFA0", "url": "https://www.uniprot.org/uniprotkb/A0A481DFA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481DFA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A481DFA0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVRILANGEIVQDDDPRVRNTAQPRSSTPRQSFLNRGHGAPLGGPSPRQQQAGARLGAAQSPFNDLNRQLVNMGFPQWHLGNHAVEPVTSILLLFLLMMLGVRGLLLVGLVYLVSHLSQR", "length": 120, "header": "tr|A0A481DFA0-1|A0A481DFA0_PIG Isoform 1 of Family with sequence similarity 241 member B OS=Sus scrofa OX=9823 GN=FAM241B PE=1 SV=1 CANONICAL=A0A481DFA0-1" }, "isoforms": [ { "isoform_ac": "A0A286ZSN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A481DFA0/entry#A0A286ZSN4-1", "sequence": { "sequence": "GDRASCHPSQRRTGPLGFSSLGSASLSSSSSPSSFFLRTRLSLSLPPLWSYQLALRSSPTHFLPPPRPCAAPAQQLQFPQKPSEGAAAPLAGRAAAARASCEVRWEEAAWEPPGVDAAEPWEPCSQAFCCLRKGAAHQGPIAPGRMVRILANGEIVQDDDPRVRNTAQPRSSTPRQSFLNRGHGAPLGGPSPRQQQAGARLGAAQSPFNDLNRQLVNMGFPQWHLGNHAVEPVTSILLLFLLMMLGVRGLLLVGLVYLVSHLSQR", "length": 265, "header": "tr|A0A286ZSN4-1|A0A481DFA0_PIG Computationally mapped isoform of Family with sequence similarity 241 member B OS=Sus scrofa OX=9823 GN=FAM241B PE=1 SV=2 CANONICAL=A0A481DFA0-1" }, "locus": { "chromosome": "14", "start_pos": 72639945, "end_pos": 72637092, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058169.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058169.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034585.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034585.2" } ] } }, { "isoform_ac": "A0A481DFA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A481DFA0/entry#A0A481DFA0-1", "sequence": { "sequence": "MVRILANGEIVQDDDPRVRNTAQPRSSTPRQSFLNRGHGAPLGGPSPRQQQAGARLGAAQSPFNDLNRQLVNMGFPQWHLGNHAVEPVTSILLLFLLMMLGVRGLLLVGLVYLVSHLSQR", "length": 120, "header": "tr|A0A481DFA0-1|A0A481DFA0_PIG Isoform 1 of Family with sequence similarity 241 member B OS=Sus scrofa OX=9823 GN=FAM241B PE=1 SV=1 CANONICAL=A0A481DFA0-1" }, "locus": { "chromosome": "14", "start_pos": 72639945, "end_pos": 72638891, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097810.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097810.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075224.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075224.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZSN4", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSN4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3H6T1-1", "protein_name": "Protein FAM241B", "gene_name": "Fam241b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVRILANGEIVQDDDPRVRTTTQQRSNSPRQGFLNRGHGGPPGGPGPRQQQAGARLGAAQSPFNDLNRQLVNMGFPQWHLGNHVMEPVTSILLLFLLMMLGVRGLLLVGLVYLVSHLSQR", "length": 120 }, "evidence": [ { "id": "A0A481DFA0", "url": "https://omabrowser.org/oma/group/A0A481DFA0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q96D05-1", "protein_name": "Protein FAM241B", "gene_name": "FAM241B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVRILANGEIVQDDDPRVRTTTQPPRGSIPRQSFFNRGHGAPPGGPGPRQQQAGARLGAAQSPFNDLNRQLVNMGFPQWHLGNHAVEPVTSILLLFLLMMLGVRGLLLVGLVYLVSHLSQR", "length": 121 }, "evidence": [ { "id": "A0A481DFA0", "url": "https://omabrowser.org/oma/group/A0A481DFA0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D882-1", "protein_name": "Protein FAM241B", "gene_name": "Fam241b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVRILANGEIVQDDDPRVRTTTQHRSSSSQQGFFNRGHGAPPGGPGPRQQQAGARLGAAQSPFSDLNRQLVNMGFPQWHLGNHVVEPVTSILLLFLLMMLGVRGLLLVGLVYLVSHLSQR", "length": 120 }, "evidence": [ { "id": "A0A481DFA0", "url": "https://omabrowser.org/oma/group/A0A481DFA0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A481DFA0", "url": "https://www.uniprot.org/uniprotkb/A0A481DFA0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A481DFA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481DFA0" }, { "id": "PF15378", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15378" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4605", "eco_id": "ECO_0000259", "start_pos": 61, "end_pos": 119, "start_aa": "Ser", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A288CFU5-1", "uniprot_ac": "A0A288CFU5", "uniprot_id": "A0A288CFU5_PIG", "mass": { "chemical_mass": 59973.0, "monoisotopic_mass": 59973.0 }, "refseq": { "ac": "XP_013849207", "name": "polypyrimidine tract-binding protein 3 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849207" }, "gene_names": [ { "name": "PTBP3", "type": "recommended", "evidence": [ { "id": "A0A288CFU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5" } ] }, { "name": "PTBP3", "type": "synonym", "evidence": [ { "id": "XP_013849207", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849207" } ] }, { "name": "ROD1", "type": "synonym", "evidence": [ { "id": "XP_013849207", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849207" } ] } ], "protein_names": [ { "name": "Polypyrimidine tract-binding protein 3", "type": "recommended", "evidence": [ { "id": "A0A288CFU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5/entry#names_and_taxonomy" } ] }, { "name": "Regulator of differentiation 1", "type": "synonym", "evidence": [ { "id": "A0A288CFU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5/entry#names_and_taxonomy" } ] }, { "name": "polypyrimidine tract-binding protein 3 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_013849207", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849207" } ] } ], "function": [ { "annotation": "Plays a role in pre-mRNA splicing and in the regulation of alternative splicing events. Activates exon skipping of its own pre-mRNA during muscle cell differentiation. Binds to the polypyrimidine tract of introns. May promote RNA looping when bound to two separate polypyrimidine tracts in the same pre-mRNA. May promote the binding of U2 snRNP to pre-mRNA. Cooperates with RAVER1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA. Represses the splicing of MAPT/Tau exon 10. Binds to polypyrimidine-rich controlling element (PCE) of CFTR and promotes exon skipping of CFTR exon 9, thereby antagonizing TIA1 and its role in exon inclusion of CFTR exon 9. Plays a role in the splicing of pyruvate kinase PKM by binding repressively to a polypyrimidine tract flanking PKM exon 9, inhibiting exon 9 inclusion and resulting in exon 10 inclusion and production of the PKM M2 isoform.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKT5", "url": "https://www.uniprot.org/uniprotkb/A0A287BKT5#function" }, { "database": "UniProtKB", "id": "ARBA00055436", "url": "https://www.uniprot.org/uniprotkb/ARBA00055436#function" }, { "database": "UniProtKB", "id": "A0A288CFU5", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5#function" }, { "database": "UniProtKB", "id": "A0A8W4FB57", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB57#function" }, { "database": "UniProtKB", "id": "A0A5G2QC29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC29#function" } ] }, { "annotation": "RNA-binding protein that mediates pre-mRNA alternative splicing regulation. Plays a role in the regulation of cell proliferation, differentiation and migration. Positive regulator of EPO-dependent erythropoiesis. Participates in cell differentiation regulation by repressing tissue-specific exons. Promotes Fas exon 6 skipping. Binds RNA, preferentially to both poly(G) and poly(U).", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKT5", "url": "https://www.uniprot.org/uniprotkb/A0A287BKT5#function" }, { "database": "UniProtKB", "id": "ARBA00059066", "url": "https://www.uniprot.org/uniprotkb/ARBA00059066#function" }, { "database": "UniProtKB", "id": "A0A288CFU5", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5#function" }, { "database": "UniProtKB", "id": "A0A8W4FB57", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB57#function" }, { "database": "UniProtKB", "id": "A0A5G2QC29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC29#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A288CFU5", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PTBP3", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5", "locus": { "chromosome": "1", "start_pos": 252986564, "end_pos": 253093063, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005466", "url": "https://www.ensembl.org/id/ENSSSCG00000005466" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005466", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005466", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12703", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12703", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12779", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12779", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12784", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12784", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "768100", "url": "https://www.ncbi.nlm.nih.gov/gene/768100", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021790", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021790", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034326", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034326", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055204", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055204", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A288CFU5", "url": "https://www.orthodb.org/?gene=A0A288CFU5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15592", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15592", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11835", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11835", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13893", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13893", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22976", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22976", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013849207", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849207", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZSV8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZSV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSV8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKT5", "url": "https://www.uniprot.org/uniprotkb/A0A287BKT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKT5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A288CFU5", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A288CFU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC29-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC29-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FB57", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FB57-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB57-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPW0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPW0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGVVTDLIAVGLKRGSDELLSSGIINGPFTMNSSTPSTGVFANGNDNKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPVTPHLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLGLPGAPTNEGTILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAGLGPGALGPLAITSSAVTGRMAMPGTGGIPGNSVLLVTNLNPDLVTPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI", "length": 557, "header": "tr|A0A288CFU5-1|A0A288CFU5_PIG Isoform 1 of Polypyrimidine tract-binding protein 3 OS=Sus scrofa OX=9823 GN=PTBP3 PE=1 SV=1 CANONICAL=A0A288CFU5-1" }, "isoforms": [ { "isoform_ac": "A0A286ZSV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5/entry#A0A286ZSV8-1", "sequence": { "sequence": "MNSSTPSTGVFANGNDNKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQRAQAALQAVSAVQSGSLGLPGAPTNEGTILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAGLGPGALGPLAITSSAVTGRMAMPGTGGIPGNSVLLVTNLNPDLVTPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI", "length": 477, "header": "tr|A0A286ZSV8-1|A0A288CFU5_PIG Computationally mapped isoform of Polypyrimidine tract-binding protein 3 OS=Sus scrofa OX=9823 GN=PTBP3 PE=1 SV=2 CANONICAL=A0A288CFU5-1" }, "locus": { "chromosome": "1", "start_pos": 253056361, "end_pos": 252991651, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063629.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063629.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034722.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034722.2" } ] } }, { "isoform_ac": "A0A287BKT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5/entry#A0A287BKT5-1", "sequence": { "sequence": "MNSITNGNDNKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPVTPHLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLGLPGAPTNEGTILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAGLGPGALGPLAITSSAVTGRMAMPGTGGIPGNSVLLVTNLNPDLVTPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI", "length": 519, "header": "tr|A0A287BKT5-1|A0A288CFU5_PIG Computationally mapped isoform of Polypyrimidine tract-binding protein 3 OS=Sus scrofa OX=9823 GN=PTBP3 PE=1 SV=3 CANONICAL=A0A288CFU5-1" }, "locus": { "chromosome": "1", "start_pos": 253051719, "end_pos": 252991651, "strand": 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"tr|A0A288CFU5-1|A0A288CFU5_PIG Isoform 1 of Polypyrimidine tract-binding protein 3 OS=Sus scrofa OX=9823 GN=PTBP3 PE=1 SV=1 CANONICAL=A0A288CFU5-1" }, "locus": { "chromosome": "1", "start_pos": 253092850, "end_pos": 252991651, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006012.4", "url": "https://www.ensembl.org/id/ENSSSCT00000006012.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005863.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005863.3" } ] } }, { "isoform_ac": "A0A5G2QC29-1", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5/entry#A0A5G2QC29-1", "sequence": { "sequence": "MNSSTPSTGVFANGNDNKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPVTPHLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLGLPGAPTNEGTILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGLSVPAGLGPGALGPLAITSSAVTGRMAMPGTGGIPGNSVLLVTNLNPDLVTPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI", "length": 500, "header": "tr|A0A5G2QC29-1|A0A288CFU5_PIG Computationally mapped isoform of Polypyrimidine tract-binding protein 3 OS=Sus scrofa OX=9823 GN=PTBP3 PE=1 SV=2 CANONICAL=A0A288CFU5-1" }, "locus": { "chromosome": "1", "start_pos": 253056361, "end_pos": 252991651, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074700.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074700.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062094.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062094.2" } ] } }, { "isoform_ac": "A0A8W4FB57-1", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5/entry#A0A8W4FB57-1", "sequence": { "sequence": "MVRGAGGGGGGARGRGSDELLSSGIINGPFTMNSSTPSTANGNDNKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPVTPHLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLGLPGAPTNEGTILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAGLGPGALGPLAITSSAVTGRMAMPGTGGIPGNSVLLVTNLNPDLVTPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI", "length": 554, "header": "tr|A0A8W4FB57-1|A0A288CFU5_PIG Computationally mapped isoform of Polypyrimidine tract-binding protein 3 OS=Sus scrofa OX=9823 GN=PTBP3 PE=1 SV=1 CANONICAL=A0A288CFU5-1" }, "locus": { "chromosome": "1", "start_pos": 253092487, "end_pos": 252991651, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103954.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103954.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076631.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076631.1" } ] } }, { "isoform_ac": "A0A8W4FPW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5/entry#A0A8W4FPW0-1", "sequence": { "sequence": "HNSQKPETLRKVKSNGNDNKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQRAQAALQAVSAVQSGSLGLPGAPTNEGTILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAGLGPGALGPLAITSSAVTGRMAMPGTGGIPGNSVLLVTNLNPDVRVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI", "length": 469, "header": "tr|A0A8W4FPW0-1|A0A288CFU5_PIG Computationally mapped isoform of Polypyrimidine tract-binding protein 3 OS=Sus scrofa OX=9823 GN=PTBP3 PE=1 SV=1 CANONICAL=A0A288CFU5-1" }, "locus": { "chromosome": "1", "start_pos": 253038814, "end_pos": 252991651, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105523.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105523.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080355.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080355.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC29" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A288CFU5", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5" } ], "pmid": "" }, { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A288CFU5", "url": 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"end_pos": 35, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A288CFU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A288CFU5" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 62, "end_pos": 146, "start_aa": "Arg", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 33, "end_pos": 35 } ] 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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983147", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983147" } ] }, { "id": "R-SSC-983156", "name": "Polyubiquitination of substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S5G0-1", "url": "https://www.uniprot.org/uniprotkb/F1S5G0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LGR6", "url": "https://www.uniprot.org/uniprotkb/I3LGR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LGR6-1", "url": "https://www.uniprot.org/uniprotkb/I3LGR6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDSEEESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNHQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNKAEIEQSQHIVRAEIVKYPEEDYQHTNSAQSRICSVQ", "length": 220, "header": "tr|A0A4X1SFW8-1|A0A4X1SFW8_PIG Isoform 1 of Ras-related protein Rab-28 OS=Sus scrofa OX=9823 GN=RAB28 PE=1 SV=1 CANONICAL=A0A4X1SFW8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SFW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFW8/entry#A0A4X1SFW8-1", "sequence": { "sequence": "MSDSEEESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNHQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNKAEIEQSQHIVRAEIVKYPEEDYQHTNSAQSRICSVQ", "length": 220, "header": "tr|A0A4X1SFW8-1|A0A4X1SFW8_PIG Isoform 1 of Ras-related protein Rab-28 OS=Sus scrofa OX=9823 GN=RAB28 PE=1 SV=1 CANONICAL=A0A4X1SFW8-1" }, "locus": { "chromosome": "8", "start_pos": 9125028, "end_pos": 9034363, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063381.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063381.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056041.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056041.2" } ] } }, { "isoform_ac": "A0A4X1SGK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFW8/entry#A0A4X1SGK6-1", "sequence": { "sequence": "MSDSEEESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQLIWSICEQ", "length": 95, "header": "tr|A0A4X1SGK6-1|A0A4X1SGK6_PIG Computationally mapped isoform of RAB28, member RAS oncogene family OS=Sus scrofa OX=9823 GN=RAB28 PE=1 SV=1 CANONICAL=A0A4X1SFW8-1" }, "locus": { "chromosome": "8", "start_pos": 9125028, "end_pos": 9048750, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059086.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059086.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055413.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055413.2" } ] } }, { "isoform_ac": "A0A8D1HVR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFW8/entry#A0A8D1HVR4-1", "sequence": { "sequence": "MSDSEEESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNHQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNKAEIEQSQRVVKADIVNYNQEPHLSEADSCRGAVHITKTPL", "length": 224, "header": "tr|A0A8D1HVR4-1|A0A4X1SFW8_PIG Computationally mapped isoform of Ras-related protein Rab-28 OS=Sus scrofa OX=9823 GN=RAB28 PE=1 SV=1 CANONICAL=A0A4X1SFW8-1" }, "locus": { "chromosome": "8", "start_pos": 9125028, "end_pos": 8951028, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074089.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074089.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064370.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064370.1" } ] } }, { "isoform_ac": "A0A8W4FG90-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFW8/entry#A0A8W4FG90-1", "sequence": { "sequence": "MSDSEEESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNHQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFCQENGFSSHFLPRCCTHYKNAFVNHKTLSEGAMQHDRQLEPSMR", "length": 191, "header": "tr|A0A8W4FG90-1|A0A4X1SFW8_PIG Computationally mapped isoform of Ras-related protein Rab-28 OS=Sus scrofa OX=9823 GN=RAB28 PE=1 SV=1 CANONICAL=A0A4X1SFW8-1" }, "locus": { "chromosome": "8", "start_pos": 9125028, "end_pos": 8776436, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106460.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106460.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078260.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078260.1" } ] } }, { "isoform_ac": "A0A8W4FIH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFW8/entry#A0A8W4FIH5-1", "sequence": { "sequence": "MSDSEEESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQQLNTCSDK", "length": 95, "header": "tr|A0A8W4FIH5-1|A0A4X1SFW8_PIG Computationally mapped isoform of Ras-related protein Rab-28 OS=Sus scrofa OX=9823 GN=RAB28 PE=1 SV=1 CANONICAL=A0A4X1SFW8-1" }, "locus": { "chromosome": "8", "start_pos": 9125028, "end_pos": 9114360, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097123.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097123.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078688.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078688.1" } ] } }, { "isoform_ac": "F1S5G0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFW8/entry#F1S5G0-1", "sequence": { "sequence": "MSDSEEESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNHQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNKAEIEQSQRAEIVKYPEEDYQHTNSAQSRICSVQ", "length": 217, "header": "tr|F1S5G0-1|A0A4X1SFW8_PIG Computationally mapped isoform of Ras-related protein Rab-28 OS=Sus scrofa OX=9823 GN=RAB28 PE=1 SV=5 CANONICAL=A0A4X1SFW8-1" }, "locus": { "chromosome": "8", "start_pos": 9125028, "end_pos": 9034363, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009553.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009553.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009308.5", "url": "https://www.ensembl.org/id/ENSSSCP00000009308.5" } ] } }, { "isoform_ac": "I3LGR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFW8/entry#I3LGR6-1", "sequence": { "sequence": "MSDSEEESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNHQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNKAEIEQSQRVVKADIVNYNQEPMSRTVNPPRSSMCAVLYTLQKRLCKPQNALGRPSCYLHISHQSKNAT", "length": 252, "header": "tr|I3LGR6-1|A0A4X1SFW8_PIG Computationally mapped isoform of Ras-related protein Rab-28 OS=Sus scrofa OX=9823 GN=RAB28 PE=1 SV=3 CANONICAL=A0A4X1SFW8-1" }, "locus": { "chromosome": "8", "start_pos": 9125028, "end_pos": 8776464, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024451.3", "url": "https://www.ensembl.org/id/ENSSSCT00000024451.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023260.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023260.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1HVR4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1HVR4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": 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"https://www.ncbi.nlm.nih.gov/protein/NP_001172088" } ] } ], "protein_names": [ { "name": "Solute carrier family 35 member C2", "type": "synonym", "evidence": [ { "id": "A0A287BSR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSR3/entry#names_and_taxonomy" } ] }, { "name": "solute carrier family 35 member H1", "type": "synonym", "evidence": [ { "id": "NP_001172088", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172088" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BSR3", "url": "https://www.uniprot.org/uniprotkb/A0A287BSR3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC35C2", "url": "https://www.uniprot.org/uniprotkb/A0A287BSR3", "locus": { "chromosome": "17", "start_pos": 48512803, "end_pos": 48525143, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022777", "url": "https://www.ensembl.org/id/ENSSSCG00000022777" } ] } } ], "crossref": [ { "id": "ENSSSCG00000022777", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022777", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21092", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21092", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152375", "url": "https://www.ncbi.nlm.nih.gov/gene/100152375", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152375", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152375", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LFWEVPK", "url": "https://omabrowser.org/oma/group/LFWEVPK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BSR3", "url": "https://www.orthodb.org/?gene=A0A287BSR3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11132", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11132", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03151", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03151", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001172088", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172088", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BSR3", "url": "https://www.uniprot.org/uniprotkb/A0A287BSR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSR3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LL24", "url": "https://www.uniprot.org/uniprotkb/I3LL24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LL24-1", "url": "https://www.uniprot.org/uniprotkb/I3LL24-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRWALDVAFLWRAVLTLGLVLLYYCFSIGITFYNKWLTKSFHFPLFMTMLHLAVIFLFSALSRALVQCSSHRARVVLSWTDYLRRVAPTALATALDVGLSNWSFLYITVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKSTQFNVEGFALVLGASFIGGIRWTLTQMLLQKAELGLQNPIDTMFHLQPLMFLGLFPLFAVFEGLHLSTSEKIFRFQDTGLLLRVLGSLFLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLSGISLHVALKALHARGDGAPKSLKGLGSNPDLELLLRTSQPDEEDNEEEYFVAQGQQ", "length": 364, "header": "tr|A0A287BSR3-1|A0A287BSR3_PIG Isoform 1 of Solute carrier family 35 member C2 OS=Sus scrofa OX=9823 GN=SLC35C2 PE=4 SV=2 CANONICAL=A0A287BSR3-1" }, "isoforms": [ { "isoform_ac": "A0A287BSR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSR3/entry#A0A287BSR3-1", "sequence": { "sequence": "MGRWALDVAFLWRAVLTLGLVLLYYCFSIGITFYNKWLTKSFHFPLFMTMLHLAVIFLFSALSRALVQCSSHRARVVLSWTDYLRRVAPTALATALDVGLSNWSFLYITVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKSTQFNVEGFALVLGASFIGGIRWTLTQMLLQKAELGLQNPIDTMFHLQPLMFLGLFPLFAVFEGLHLSTSEKIFRFQDTGLLLRVLGSLFLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLSGISLHVALKALHARGDGAPKSLKGLGSNPDLELLLRTSQPDEEDNEEEYFVAQGQQ", "length": 364, "header": "tr|A0A287BSR3-1|A0A287BSR3_PIG Isoform 1 of Solute carrier family 35 member C2 OS=Sus scrofa OX=9823 GN=SLC35C2 PE=4 SV=2 CANONICAL=A0A287BSR3-1" }, "locus": { "chromosome": "17", "start_pos": 48521105, "end_pos": 48513259, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043582.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043582.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059177.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059177.2" } ] } }, { "isoform_ac": "I3LL24-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSR3/entry#I3LL24-1", "sequence": { "sequence": "MERVGSGHQPLREAAPTDRAGELPLPRMGRWALDVAFLWRAVLTLGLVLLYYCFSIGITFYNKWLTKSFHFPLFMTMLHLAVIFLFSALSRALVQCSSHRARVVLSWTDYLRRVAPTALATALDVGLSNWSFLYITVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKSTQFNVEGFALVLGASFIGGIRWTLTQMLLQKAELGLQNPIDTMFHLQPLMFLGLFPLFAVFEGLHLSTSEKIFRFQDTGLLLRVLGSLFLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLSGISLHVALKALHARGDGAPKSLKGLGSNPDLELLLRTSQPDEEDNEEEYFVAQGQQ", "length": 391, "header": "tr|I3LL24-1|A0A287BSR3_PIG Computationally mapped isoform of Solute carrier family 35 member C2 OS=Sus scrofa OX=9823 GN=SLC35C2 PE=4 SV=4 CANONICAL=A0A287BSR3-1" }, "locus": { "chromosome": "17", "start_pos": 48521306, "end_pos": 48513259, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031187.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031187.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024790.4", "url": "https://www.ensembl.org/id/ENSSSCP00000024790.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LL24", "url": "https://www.uniprot.org/uniprotkb/I3LL24" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152375", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152375", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M589-1", "protein_name": "Solute carrier family 35 member C2", "gene_name": "SLC35C2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGRCAPDVAFVWRAVLTLGLVLLYYCFSIGITFYNKWLTKSFHFPLFMTMLHLAVIFLFSALSRALAQCSSHRARVVLSWPDYLRRVAPTALATALDVGLSNWSFLYITVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKSTQFNIEGFALVLGASFIGGIRWTLTQMLLQKAELGLQNPIDTMFHLQPLMFLGLFPLFAVFEGLHLSTSEKIFRFQDTGLLLRVLGSLFLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLSGISLHIALKALHARGDGAPKPLKGLGSNPDLELLLRSSQPEDEDNEEEEYFVAQGQQ", "length": 365 }, "evidence": [ { "id": "A0A287BSR3", "url": "https://omabrowser.org/oma/group/A0A287BSR3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "B2RYM9-1", "protein_name": "Solute carrier family 35 member C2", "gene_name": "Slc35c2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRWALDVAFVWKAALTLGLVLLYYCFSIGITFYNKWLTKSFHFPLFMTMLHLAVIFLFSALSRALVQCSSHRARVVLSWTDYLRRVAPTALATALDVGLSNWSFLYITVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKSTQFNVEGFALVLGASFIGGIRWTLTQMLLQKADLGLQNPIDTMFHLQPLMFLGLFPLFAVFEGLHLSTSEKIFRFQDPGLLLWVLGSLLLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLSGISLHVALKALHSRGDGGPKPRKGLGSSADLELLLQSSQQEEDNGEEEYFMTQGQQ", "length": 364 }, "evidence": [ { "id": "A0A287BSR3", "url": "https://omabrowser.org/oma/group/A0A287BSR3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8VCX2-1", "protein_name": "Solute carrier family 35 member H1", "gene_name": "Slc35h1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRWALDVAFVWKAALTLGLVLLYYCFSIGITFYNKWLTKSFHFPLFMTMLHLAVIFLFSALSRALVQCSSHKARVVLSWTDYLRRVAPTALATALDVGLSNWSFLYITVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKSTQFNVEGFALVLGASFIGGIRWTLTQILLQKADLGLQNPIDTMFHLQPLMFLGLFPLFAIFEGLHLSTSEKIFRFQDTGLLLWVLGSLLLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLSGISLHVALKALHSRGDGGPKPLKSLGSSADLELLLRSSQQEEEDGEEEYFVTQGQQ", "length": 364 }, "evidence": [ { "id": "A0A287BSR3", "url": "https://omabrowser.org/oma/group/A0A287BSR3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NQQ7-1", "protein_name": "Solute carrier family 35 member H1", "gene_name": "SLC35H1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGRWALDVAFLWKAVLTLGLVLLYYCFSIGITFYNKWLTKSFHFPLFMTMLHLAVIFLFSALSRALVQCSSHRARVVLSWADYLRRVAPTALATALDVGLSNWSFLYVTVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKSTQFNVEGFALVLGASFIGGIRWTLTQMLLQKAELGLQNPIDTMFHLQPLMFLGLFPLFAVFEGLHLSTSEKIFRFQDTGLLLRVLGSLFLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLSGISLHVALKALHSRGDGGPKALKGLGSSPDLELLLRSSQREEGDNEEEEYFVAQGQQ", "length": 365 }, "evidence": [ { "id": "A0A287BSR3", "url": "https://omabrowser.org/oma/group/A0A287BSR3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VZP2-1", "protein_name": "Sugar phosphate transporter domain-containing protein", "gene_name": "Dmel\\CG14971", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MVAAKYERLNTSGEAAGNGNGNASDAEDEEIELHLAQKTQLGNGHRLRQSNFKYASGKCGSGEAPCTNETATLAQENMMMQMAVGTLAIIFLYLALSISLTFYQTDINRQMPFPLAIVTYHLVVKFLLAAAARRIYRMRVGRSRVQLDWRLALRKMAPTGVASAIDIGFSNWGLALVPISLYTMTKSSTIVFILLFAIAFGLEKKSWYLVSIVGLIGTGLLMFTYKSTDFNALGFFFILFASLSSGLRWSFAQFIMQKSKLGLHNPIDMIYYMQPWMIASLVPLVIGIEGAGLIAVIEDLHNHTSNEITWAIARISAGALLAFLMEFSEFLVLCKTSSLTLSIAGIFKDICQLALAVTIRKDHLSVINYIGLIICLAGIVCHLLHKYSNMKEMQRQQELQLDNDQEESSPGEYKFNDGSAIVGVHVKSHSTLTVPLLEQTDSEDESGASNKQNASDVIFDVLKRRDMQR", "length": 469 }, "evidence": [ { "id": "A0A287BSR3", "url": "https://omabrowser.org/oma/group/A0A287BSR3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSR3", "url": "https://www.uniprot.org/uniprotkb/A0A287BSR3" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSR3", "url": "https://www.uniprot.org/uniprotkb/A0A287BSR3" } ], "pmid": "" }, { "name": "cis-Golgi network", "id": "GO:0005801", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005801", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSR3", "url": "https://www.uniprot.org/uniprotkb/A0A287BSR3" } ], "pmid": "" }, { "name": "endoplasmic reticulum-Golgi intermediate compartment", "id": "GO:0005793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005793", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSR3", "url": "https://www.uniprot.org/uniprotkb/A0A287BSR3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "antiporter activity", "id": "GO:0015297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015297", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSR3", "url": 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"A0A480TMJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480TMJ2/entry#names_and_taxonomy" } ] }, { "name": "male-specific lethal 3 homolog", "type": "synonym", "evidence": [ { "id": "NP_001231010", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231010" } ] } ], "function": [ { "annotation": "Non-catalytic component of the MSL histone acetyltransferase complex, a multiprotein complex that mediates the majority of histone H4 acetylation at 'Lys-16' (H4K16ac), an epigenetic mark that prevents chromatin compaction. The MSL complex is required for chromosome stability and genome integrity by maintaining homeostatic levels of H4K16ac. The MSL complex is also involved in gene dosage by promoting up-regulation of genes expressed by the X chromosome. X up-regulation is required to compensate for autosomal biallelic expression. The MSL complex also participates in gene dosage compensation by promoting expression of Tsix non-coding RNA. Acts as a histone reader that specifically recognizes and binds histone H4 monomethylated at 'Lys-20' (H4K20Me1) in a DNA-dependent manner and is proposed to be involved in chromosomal targeting of the MSL complex. 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053820", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053820", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100526025", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526025", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A480TMJ2", "url": "https://www.orthodb.org/?gene=A0A480TMJ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "K7GS61", "url": "https://www.orthodb.org/?gene=K7GS61", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10880", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10880", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10880:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10880:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { 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"strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013251.6", "url": "https://www.ensembl.org/id/ENSSSCT00000013251.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012895.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012895.4" } ] } }, { "isoform_ac": "K7GS61-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TMJ2/entry#K7GS61-1", "sequence": { "sequence": "MSASEGMKFKFHSGEKVLCFEPDPTKARVLYDAKVPPRRDREDARDGDPGTGGERGCGRSPWGHRWEGWPNPPAELALDAAEPSRLQLPEVSRLQLAGLAWTLIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKLARKAVARLRSTGRKRKRCRLPGVDSVLKSLPAEEKDENDENSISSSSDDNSEEKDEEISEESDIEEKTETKEDPELHAKREMEERTITIEIPEVLKKKLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQVQYKKVTSSKFFLPIKESTTNTNRNQEELSPSPPLLNPSTPQSTESQPTTGEPATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPVPLTPSKEGSTVFAGFEGRRTNEINEVLSWKLVPDSYPPGDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFLAEYHDDFFPESAYVAACEAHYSTKNPRAIY", "length": 591, "header": "tr|K7GS61-1|A0A480TMJ2_PIG Computationally mapped isoform of MSL complex subunit 3 OS=Sus scrofa OX=9823 GN=MSL3 PE=4 SV=3 CANONICAL=A0A480TMJ2-1" }, "locus": { "chromosome": "X", "start_pos": 8534538, "end_pos": 8519427, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035623.3", "url": "https://www.ensembl.org/id/ENSSSCT00000035623.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030741.3", "url": "https://www.ensembl.org/id/ENSSSCP00000030741.3" } ] } }, { "isoform_ac": "K7GSM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TMJ2/entry#K7GSM6-1", "sequence": { "sequence": "MKMMKTKEDPELHAKREMEERTITIEIPEVLKKKLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQVQYKKVTSSKFFLPIKESTTNTNRNQEELSPSPPLLNPSTPQSTESQPTTGEPATPKRRKAEPEALQSLRRSTRHSANCDRLSESSASPQPKRRQQDTSASMPKLFLHLEKKTPVHSRSSSPVPLTPSKEGSTVFAGFEGRRTNEINEVLSWKLVPDSYPPGDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFLAEYHDDFFPESAYVAACEAHYSTKNPRAIY", "length": 372, "header": "tr|K7GSM6-1|A0A480TMJ2_PIG Computationally mapped isoform of MSL complex subunit 3 OS=Sus scrofa OX=9823 GN=MSL3 PE=4 SV=3 CANONICAL=A0A480TMJ2-1" }, "locus": { "chromosome": "X", "start_pos": 8534538, "end_pos": 8521842, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036487.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036487.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030913.3", "url": "https://www.ensembl.org/id/ENSSSCP00000030913.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "K7GSM6", "url": "https://www.uniprot.org/uniprotkb/K7GSM6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100526025", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526025", "resource": "KEGG Pathway" }, { "id": "R-SSC-3214847", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214847", "resource": "Reactome", "description": "HATs acetylate histones" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A480TMJ2", "url": "https://www.uniprot.org/uniprotkb/A0A480TMJ2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480TMJ2", "url": "https://www.uniprot.org/uniprotkb/A0A480TMJ2" } ], "pmid": "" }, { "name": "NuA4 histone acetyltransferase complex", "id": "GO:0035267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035267", "evidence": [ { "database": "UniProtKB", "id": "A0A480TMJ2", "url": "https://www.uniprot.org/uniprotkb/A0A480TMJ2" } ], "pmid": "" }, { "name": "MSL complex", "id": "GO:0072487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072487", "evidence": [ { "database": "UniProtKB", "id": "A0A480TMJ2", "url": "https://www.uniprot.org/uniprotkb/A0A480TMJ2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A480TMJ2", "url": "https://www.uniprot.org/uniprotkb/A0A480TMJ2" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480SNH9-1", "uniprot_ac": "A0A480SNH9", "uniprot_id": "A0A480SNH9_PIG", "mass": { "chemical_mass": 37424.0, "monoisotopic_mass": 37424.0 }, "refseq": { "ac": "XP_003354584", "name": "CD2 antigen cytoplasmic tail-binding protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354584" }, "gene_names": [ { "name": "CD2BP2", "type": "recommended", "evidence": [ { "id": "A0A480SNH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9" } ] }, { "name": "CD2BP2", "type": "synonym", "evidence": [ { "id": "XP_003354584", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354584" } ] } ], "protein_names": [ { "name": "CD2 antigen cytoplasmic tail-binding protein 2", "type": "recommended", "evidence": [ { "id": "A0A480SNH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9/entry#names_and_taxonomy" } ] }, { "name": "CD2 antigen cytoplasmic tail-binding protein 2", "type": "synonym", "evidence": [ { "id": "XP_003354584", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354584" } ] } ], "function": [ { "annotation": "Involved in pre-mRNA splicing as component of the U5 snRNP complex that is involved in spliceosome assembly.", "evidence": [ { "database": "UniProtKB", "id": "A0A480SNH9", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9#function" }, { "database": "UniProtKB", "id": "ARBA00056564", "url": "https://www.uniprot.org/uniprotkb/ARBA00056564#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480SNH9", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CD2BP2", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9", "locus": { "chromosome": "3", "start_pos": 17962948, "end_pos": 17955255, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007791", "url": "https://www.ensembl.org/id/ENSSSCG00000007791" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007791", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007791", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00072", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00072", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100621208", "url": "https://www.ncbi.nlm.nih.gov/gene/100621208", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039905", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039905", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100621208", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621208", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GENTNFY", "url": "https://omabrowser.org/oma/group/GENTNFY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480SNH9", "url": "https://www.orthodb.org/?gene=A0A480SNH9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13138", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13138", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13138:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13138:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02213", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02213", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003354584", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354584", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480SNH9", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480SNH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RG67", "url": "https://www.uniprot.org/uniprotkb/F1RG67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RG67-1", "url": "https://www.uniprot.org/uniprotkb/F1RG67-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLKRKVTFQGVGDEEDEDGISVPKKLVDSVAGVGGPGSRFKDKHSLDSDEEDDDDDGSSKYDILASEDVEGQEAATLPSEGGVRITPFNLQEEMEEGHFDADGNYFLNRDAQIRDSWLDNIDWVKIRERPPDQRPLSDSEEEDSLGQTPMSVQALLEGLLELLLPRETVAGALRRLGARGGGKGGSKGPGRPSSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCRTQGAPDPTPPPSLDMFAEEVAEAELETPTPAQKEEAESPGDGLADVMWEYKWENTGDAELYGPFSSTQMQTWVNEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT", "length": 340, "header": "tr|A0A480SNH9-1|A0A480SNH9_PIG Isoform 1 of CD2 antigen cytoplasmic tail-binding protein 2 OS=Sus scrofa OX=9823 GN=CD2BP2 PE=1 SV=1 CANONICAL=A0A480SNH9-1" }, "isoforms": [ { "isoform_ac": "A0A480SNH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9/entry#A0A480SNH9-1", "sequence": { "sequence": "MLKRKVTFQGVGDEEDEDGISVPKKLVDSVAGVGGPGSRFKDKHSLDSDEEDDDDDGSSKYDILASEDVEGQEAATLPSEGGVRITPFNLQEEMEEGHFDADGNYFLNRDAQIRDSWLDNIDWVKIRERPPDQRPLSDSEEEDSLGQTPMSVQALLEGLLELLLPRETVAGALRRLGARGGGKGGSKGPGRPSSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCRTQGAPDPTPPPSLDMFAEEVAEAELETPTPAQKEEAESPGDGLADVMWEYKWENTGDAELYGPFSSTQMQTWVNEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT", "length": 340, "header": "tr|A0A480SNH9-1|A0A480SNH9_PIG Isoform 1 of CD2 antigen cytoplasmic tail-binding protein 2 OS=Sus scrofa OX=9823 GN=CD2BP2 PE=1 SV=1 CANONICAL=A0A480SNH9-1" }, "locus": { "chromosome": "3", "start_pos": 17960314, "end_pos": 17958400, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065770.2", "url": "https://www.ensembl.org/id/ENSSSCT00000065770.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040531.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040531.1" } ] } }, { "isoform_ac": "F1RG67-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9/entry#F1RG67-1", "sequence": { "sequence": "MLKRKVTFQGVGDEEDEDGISVPKKLVDSVAGVGGPGSRFKDKHSLDSDEEDDDDDGSSKYDILASEDVEGQEAATLPSEGGVRITPFNLQEEMEEGHFDADGNYFLNRDAQIRDSWLDNIDWVKIRERPPDQRPLSDSEEEDSLGQTPMSVQALLEGLLELLLPRETVAGALRRLGARGGGKGGSKGPGRPSSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCRTQGAPDPTPPPSLDMFAEEVAEAELETPTPAQKEEAESPGDGLADVMWEYKWENTGDAELYGPFSSTQMQVGSFLLHFASSLPAPFPLVLPQLCPLSLQTWVNEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT", "length": 369, "header": "tr|F1RG67-1|A0A480SNH9_PIG Computationally mapped isoform of CD2 antigen cytoplasmic tail-binding protein 2 OS=Sus scrofa OX=9823 GN=CD2BP2 PE=1 SV=4 CANONICAL=A0A480SNH9-1" }, "locus": { "chromosome": "3", "start_pos": 17960314, "end_pos": 17958400, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008539.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008539.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008320.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008320.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 242, "start_aa": "Thr", "end_pos": 242, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr242", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 263, "start_aa": "Thr", "end_pos": 263, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr263", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RG67", "url": "https://www.uniprot.org/uniprotkb/F1RG67" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100621208", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621208", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B4F786-1", "protein_name": "CD2 antigen cytoplasmic tail-binding protein 2", "gene_name": "Cd2bp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKVTFQGVGDEDDEDEISVPKKKLVDPVAGAGGPGSRFKGKHSLDSDEEDDDEGSSKYDILASEDVEGQEAATLPSEGGVRITPFNLQEEMEEGHFDADGNYFLNQDSQIRDSWLDNIDWVRIKERPPDKQQVSDSEEEGSLGQTPMSVQALLEGLLELLLPRETVAGALRRLGARGGGKGNSKGTGRPNSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCRTQGSHDPTPPPSLDMFAEEVTEGELETPTPTHREEADSAGDGLMDVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT", "length": 340 }, "evidence": [ { "id": "A0A480SNH9", "url": "https://omabrowser.org/oma/group/A0A480SNH9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O95400-1", "protein_name": "CD2 antigen cytoplasmic tail-binding protein 2", "gene_name": "CD2BP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPKRKVTFQGVGDEEDEDEIIVPKKKLVDPVAGSGGPGSRFKGKHSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVRITPFNLQEEMEEGHFDADGNYFLNRDAQIRDSWLDNIDWVKIRERPPGQRQASDSEEEDSLGQTSMSAQALLEGLLELLLPRETVAGALRRLGARGGGKGRKGPGQPSSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCQTLGPHNPTPPPSLDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT", "length": 341 }, "evidence": [ { "id": "A0A480SNH9", "url": "https://omabrowser.org/oma/group/A0A480SNH9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CWK3-1", "protein_name": "CD2 antigen cytoplasmic tail-binding protein 2", "gene_name": "Cd2bp2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKRKVTFQGVGDEDGEDEISVPKKKLVDPVAAAGGPGSRFKGKHSLDSDEEDDDEEGSSKYDILASEDVEGQEAATLPSEGGVRITPFNLQEEMEEGHFDADGNYFLNQDAQIRDSWLDNIDWVRIKERPPDKHQVSDSEEEDSLGQTPMSAQALLEGLLELLLPRETVAGALRRLGARGGGKGSNSKGTGRPNSPQRLDRLSGLADQMVARGNLGVYQETRERLAMRLKGLGCRAQGSHDPTPPPSLDMFAEEVAEGELETPTPTQREEAESAGDGLMDVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRIDFELYT", "length": 342 }, "evidence": [ { "id": "A0A480SNH9", "url": "https://omabrowser.org/oma/group/A0A480SNH9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VKV5-1", "protein_name": "CD2 antigen cytoplasmic tail-binding protein 2 homolog", "gene_name": "holn1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MASKRKHQASQKVKEESFKKHTLDSDEEDSDDYEREYLNDSDIEGGEEGVAKVEDDVKVTPFNMKEELEEGHFDKDGHYHWNKETEAKDNWLDNIDWVKIGTQKNAFDPAKDEENSSDEEKNEPVGKAFNLSMNLMKMVEFMKPGETVKMTLQRLGKQRPVLTTLQRIKQKKAGIVDPKTQEISQLTELANEILSKTGNMDIYQDTYESIKAKIADLPGTSKPKVADDIDMYADDFETKELERSKTSSSDSSKPTTTTSEVTWEFKWSQDETDIQGPFSTEKMLKWSQENYFKNGVYVRKCGENTNFYTSNRIDFDLYL", "length": 319 }, "evidence": [ { "id": "A0A480SNH9", "url": "https://omabrowser.org/oma/group/A0A480SNH9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A480SNH9", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A480SNH9", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9" } ], "pmid": "" }, { "name": "U5 snRNP", "id": "GO:0005682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005682", "evidence": [ { "database": "UniProtKB", "id": "A0A480SNH9", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A480SNH9", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ribonucleoprotein complex binding", "id": "GO:0043021", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043021", "evidence": [ { "database": "UniProtKB", "id": "A0A480SNH9", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "A0A480SNH9", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "A0A480SNH9", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480SNH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480SNH9" }, { "id": "PS50829", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50829" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GYF", "eco_id": "ECO_0000259", "start_pos": 279, "end_pos": 337, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 242, 263 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480JSD9-1", "uniprot_ac": "A0A480JSD9", "uniprot_id": "A0A480JSD9_PIG", "mass": { "chemical_mass": 182901.0, "monoisotopic_mass": 182901.0 }, "refseq": { "ac": "XP_020931838", "name": "alsin isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931838" }, "gene_names": [ { "name": "ALS2", "type": "recommended", "evidence": [ { "id": "A0A480JSD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ] }, { "name": "ALS2", "type": "synonym", "evidence": [ { "id": "XP_020931838", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931838" } ] } ], "protein_names": [ { "name": "Alsin", "type": "recommended", "evidence": [ { "id": "A0A480JSD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9/entry#names_and_taxonomy" } ] }, { "name": "alsin isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020931838", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931838" } ] } ], "function": [ { "annotation": "May act as a GTPase regulator. 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"gene": [ { "name": "ALS2", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9", "locus": { "chromosome": "15", "start_pos": 105328719, "end_pos": 105401093, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016109", "url": "https://www.ensembl.org/id/ENSSSCG00000016109" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016109", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016109", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13269", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13269", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100626864", "url": "https://www.ncbi.nlm.nih.gov/gene/100626864", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000408", "url": 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"Other" ] }, { "id": "PF25582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26202", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26202", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8876198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020931838", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931838", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZI16", "url": "https://www.uniprot.org/uniprotkb/A0A286ZI16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZI16-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZI16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8G5", "url": "https://www.uniprot.org/uniprotkb/A0A287A8G5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8G5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AD27", "url": "https://www.uniprot.org/uniprotkb/A0A287AD27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AD27-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AD27-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480JSD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8I7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8I7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8I7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8I7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD79", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD79-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD79-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH95", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH95-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH95-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI31", "url": "https://www.uniprot.org/uniprotkb/F1SI31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI31-1", "url": "https://www.uniprot.org/uniprotkb/F1SI31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSKKRSSQEAEGSKERGLVHVWQAGSCSVTPERLPGWTGKTVLQAALGVKHGVLLTEDGEVYSFGTLPWRSEPAELCPSSPILENALVGQYVVTVATGSFHSGAVTESGVVYMWGENSAGQCAVANQQYVPEPNPVSISDSETSPLLAVRILQLACGEEHTLALSISREIWAWGTGCQLGLITTTFPVTKPQKVEHLAGRVVLQVACGAFHSLALVQCLPSQDLKPVPERCNQCSQLLITMTDKEDHVIISDSHCCPLGVTLSENQASTAITPSTETLDSQGEVFENALTQNALPAATELNVGNDQTTSVQTISSPQDDMGTTEIPPARSSPPYPDPQAVNEYVQSDHSVRENSENGEKPMPSQPLVEEAIPNLHSPPTTSTSALNSLVVSCASAVGVRVAATYEAGALSLKKVMNFYSTVPCEPGAQAGSSSMGPEGLKDSREEQVKQESMQGKKSSSLVDIREEESEGGTRRLSLPGLLSQVSPRLLRRAARVKTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKDGQLGHGDVLPRLQPLCVKCLDGKEVIHLEAGGYHSLALTAKSQVYSWGSNTFGQLGHSDFPTTVPRLAKMNSENGVWSVAAGQDYSLFLVDTEDFQPGLYYSGRQDPTEGDNLPENHSGTKTPVLLSCSKLGYISRVTAGKDSCLALVDKNIMGYIASLHELATTERRFYSKLSDIKSHVLRPLLSLENLGTASTVQLLQEVASRFSKLCYLIGQHGTSLSSFLQGIKEARSLVILKHASLFLDSYTEYCTSITNFLVMGGFQLLAKPAIDFLNKNQELLQDLSDMNDENTQLMEILNTLFFLPIRRLHNYAKVLLKLATCFEVTSPEYQKLQDSSSCYESLALHLGRKRKEAEYTLVFWKTFPGKMTDSLRKPERRLLCESSNRALSLQHAGRFSVNWFILFNDALVHAQFSTHHVFPLATLWAEPLSEEAGGVNGLKITTPEEQFILISSTPQEKTKWLRAISQAVDQALRGTSDLPPYGSSSSIQRQEPPISRSAKYTFYKDPRLKDATYDGRWLSGKPHGRGVLKWPDGKMYSGMFRNGLEDGYGEYRIPNKALNKEDHYVGHWKEGKMCGQGVYSYASGEVFEGCFQDNMRHGHGLLRSGKLTSSSPSMFIGQWVMDKKAGYGVFDDITRGEKYMGMWQDDACQGNGVVVTQFGLYYEGNFHLNKMMGNGVLLSEDDTIYEGEFSDDWTLSGKGTLTMPNGDYIEGYFSGEWGSGIKVTGTYFKPSLYESDKDRPKVFRKLGNLAVPADEKWKAVFDECWRQLGCENPGQGDVWKAWDNIAVALTTSRRQHRDSPEMLSRSQTQTLESLEFIPQHVGAFSVEKYDDIKRYLIKACDTPLHPLGRLVETLVAVYRMTYVGVGANRRLLQEAVKEIKSYLKRIFQLVRFLFPELPEEGSTIPLSAPLPTERKSFCTGKSDSRSESPEPGYVVTGSGLLLPVLLPRLYPPLFMLYALDNDREEDVYWECVLRLNKQPDIALLGFLGVQRKFWPATLSVLGESKKVLPTTKDACFSSAVECLQQISTTFTPSDKLKVIQQTFEEISQSVLASLQEDFLWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDPYLQHGEQGIMFTTLKACYYQIQREKLN", "length": 1651, "header": "tr|A0A480JSD9-1|A0A480JSD9_PIG Isoform 1 of Alsin OS=Sus scrofa OX=9823 GN=ALS2 PE=4 SV=1 CANONICAL=A0A480JSD9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZI16-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9/entry#A0A286ZI16-1", "sequence": { "sequence": "MDSKKRSSQEAEGSKERGLVHVWQAGSCSVTPERLPGWTGKTVLQAALGVKHGVLLTEDGEVYSFGTLPWRSEPAELCPSSPILENALVGQYVVTVATGSFHSGAVTESGVVYMWGENSAGQCAVANQQYVPEPNPVSISDSETSPLLAVRILQLACGEEHTLALSISREIWAWGTGCQLGLITTTFPVTKPQKVEHLAGRVVLQVACGAFHSLALVQCLPSQDLKPVPERCNQCSQLLITMTDKEDHVIISDSHCCPLGVTLSENQASTAITPSTETLDSQGEVFENALTQNALPAATELNVGNDQTTSVQTISSPQDDMGTTEIPPARSSPPYPDPQAVNEYVQSDHSVRENSENGEKPMPSQPLVEEAIPNLHSPPTTSTSALNSLVVSCASAVGVRVAATYEAGALSLKKVMNFYSTVPCEPGAQAGSSSMGPEGLKDSREEQVKQESMQGKKSSSLVDIREEESEGGTRRLSLPGLLSQVSPRLLRRAARVKTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKDGQLGHGDVLPRLQPLCVKCLDGKEVIHLEAGGYHSLALTAKSQVYSWGSNTFGQLGHSDFPTTVPRLAKMNSENGVWSVAAGQDYSLFLVDTEDFQPGLYYSGRQDPTEGDNLPENHSGTKTPVLLSCSKLGYISRVTAGKDSCLALVDKNIMGYIASLHELATTERRFYSKLSDIKSHVLRPLLSLENLGTASTVQLLQEVASRFSKLCYLIGQHGTSLSSFLQGIKEARSLVILKHASLFLDSYTEYCTSITNFLVMGGFQLLAKPAIDFLNKNQELLQDLSDMNDENTQLMEILNTLFFLPIRRLHNYAKVLLKLATCFEVTSPEYQKLQDSSSCYESLALHLGRKRKEAEYTLVFWKTFPGKMTDSLRKPERRLLCESSNRALSLQHAGRFSVNWFILFNDALVHAQFSTHHVFPLATLWAEPLSEEAGGVNGLKITTPEEQFILISSTPQEKTKWLRAISQAVDQALRGTSDLPPYGSSSSIQRQEPPISRSAKYTFYKDPRLKDATYDGRWLSGKPHGRGVLKWPDGKMYSGMFRNGLEDGYGEYRIPNKALNKEDHYVGHWKEGKMCGQGVYSYASGEVFEGCFQDNMRHGHGLLRSGKLTSSSPSMFIGQWVMDKKAGYGVFDDITRGEKYMGMWQDDACQGNGVVVTQFGLYYEGNFHLNKMMGNGVLLSEDDTIYEGEFSDDWTLSGKGTLTMPNGDYIEGYFSGEWGSGIKVTGTYFKPSLYESDKDRPKVFRKLGNLAVPADEKWKAVFDECWRQLGCENPGQGDVWKAWDNIAVALTTSRRQHRDSPEMLSRSQTQTLESLEFIPQHVGAFSVEKYDDIKRYLIKACDTPLHPLGRLVETLVAVYRMTYVGVGANRRLLQEAVKEIKSYLKRIFQLVRFLFPELPEEGSTIPLSAPLPTERKSFCTGKSDSRSESPEPGYVVTGSGLLLPVLLPRLYPPLFMLYALDNDREEDVYWECVLRLNKQPDIALLGFLGVQRKFWPATLSVLGESKKVLPTTKDACFSSAVECLQQISTTFTPSDKLKVIQQTFEEISQSVLASLQEDFLWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDPYLQHGEQGIMFTTLKGIHDGRGSVPLVPHRNPQHGARPNRSLLPPD", "length": 1670, "header": "tr|A0A286ZI16-1|A0A480JSD9_PIG Computationally mapped isoform of Alsin OS=Sus scrofa OX=9823 GN=ALS2 PE=4 SV=3 CANONICAL=A0A480JSD9-1" }, "locus": { "chromosome": "15", "start_pos": 105388623, "end_pos": 105329388, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045541.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045541.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031197.3", "url": "https://www.ensembl.org/id/ENSSSCP00000031197.3" } ] } }, { "isoform_ac": "A0A287A8G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9/entry#A0A287A8G5-1", "sequence": { "sequence": "MDSKKRSSQEAEGSKERGLVHVWQAGSCSVTPERLPGWTGKTVLQAALGVKHGVLLTEDGEVYSFGTLPWRSEPAELCPSSPILENALVGQYVVTVATGSFHSGAVTESGVVYMWGENSAGQCAVANQQYVPEPNPVSISDSETSPLLAVRILQLACGEEHTLALSISREIWAWGTGCQLGLITTTFPVTKPQKVEHLAGRVVLQVACGAFHSLALVQCLPSQDLKPVPERCNQCSQLLITMTDKEDHVIISDSHCCPLGVTLSENQASTAITPSTETLDSQGEVFENALTQNALPAATELNVGNDQTTSVQTISSPQDDMGTTEIPPARSSPPYPDPQAVNEYVQSDHSVRENSENGEKPMPSQPLVEEAIPNLHSPPTTSTSALNSLVVSCASAVGVRVAATYEAGALSLKKVMNFYSTVPCEPGAQAGSSSMGPEGLKDSREEQVKQESMQGKKSSSLVDIREEESEGGTRRLSLPGLLSQVSPRLLRRAARVKTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKDGQLGHGDVLPRLQPLCVKCLDGKEVIHLEAGGYHSLALTAKSQVYSWGSNTFGQLGHSDFPTTVPRLAKMNSENGVWSVAAGQDYSLFLVDTEDFQPGLYYSGRQDPTEGDNLPENHSGTKTPVLLSCSKLGYISRVTAGKDSCLALVDKNIMGYIASLHELATTERRFYSKLSDIKSHVLRPLLSLENLGTASTVQLLQEVASRFSKLCYLIGQHGTSLSSFLQGIKEARSLVILKHASLFLDSYTEYCTSITNFLVMGGFQLLAKPAIDFLNKNQELLQDLSDMNDENTQLMEILNTLFFLPIRRLHNYAKVLLKLATCFEVTSPEYQKLQDSSSCYESLALHLGRKRKEAEYTLVFWKTFPGKMTDSLRKPERRLLCESSNRALSLQHAGRFSVNWFILFNDALVHAQFSTHHVFPLATLWAEPLSEEAGGVNGLKITTPEEQFILISSTPQEKTKWLRAISQAVDQALRGTSDLPPYGSSSSIQRQEPPISRSAKYTFYKDPRLKDATYDGRWLSGKPHGRGVLKWPDGKMYSGMFRNGLEDGYGEYRIPNKALNKEDHYVGHWKEGKMCGQGVYSYASGEVFEGCFQDNMRHGHGLLRSGKLTSSSPSMFIGQWVMDKKAGYGVFDDITRGEKYMGMWQDDACQGNGVVVTQFGLYYEGNFHLNKMMGNGVLLSEDDTIYEGEFSDDWTLSGKGTLTMPNGDYIEGYFSGEWGSGIKVTGTYFKPSLYESDKDRPKVFRKLGNLAVPADEKWKAVFDECWRQLGCENPGQGDVWKAWDNIAVALTTSRRQHRDSPEMLSRSQTQTLESLEFIPQHVGAFSVEKYDDIKRYLIKACDTPLHPLGRLVETLVAVYRMTYVGVGANRRLLQEAVKEIKSYLKRIFQLVRFLFPELPEEGSTIPLSAPLPTERKSFCTGKSDSRSESPEPGYVVTGSGLLLPVLLPRLYPPLFMLYALDNDREEDVYWECVLRLNKQPDIALLGFLGVQRKFWPATLSVLGESKKVLPTTKDACFSSAVECLQQISTTFTPSDKLKVIQQTFEEISQSVLASLQEDFLWSMDDLFPVFLYVVLRARE", "length": 1608, "header": "tr|A0A287A8G5-1|A0A480JSD9_PIG Computationally mapped isoform of Alsin OS=Sus scrofa OX=9823 GN=ALS2 PE=4 SV=2 CANONICAL=A0A480JSD9-1" }, "locus": { "chromosome": "15", "start_pos": 105388623, "end_pos": 105329337, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041838.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041838.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040272.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040272.2" } ] } }, { "isoform_ac": "A0A287AD27-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9/entry#A0A287AD27-1", "sequence": { "sequence": "MWGENSAGQCAVANQQYVPEPNPVSISDSETSPLLAVRILQLACGEEHTLALSISREIWAWGTGCQLGLITTTFPVTKPQKVEHLAGRVVLQVACGAFHSLALVQCLPSQDLKPVPERCNQCSQLLITMTDKEDHVIISDSHCCPLGVTLSENQASTAITPSTETLDSQGEVFENALTQNALPAATELNVGNDQTTSVQTISSPQDDMGTTEIPPARSSPPYPDPQAVNEYVQSDHSVRENSENGEKPMPSQPLVEEAIPNLHSPPTTSTSALNSLVVSCASAVGVRVAATYEAGALSLKKVMNFYSTVPCEPGAQAGSSSMGPEGLKDSREEQVKQESMQGKKSSSLVDIREEESEGGTRRLSLPGLLSQVSPRLLRRAARVKTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKDGQLGHGDVLPRLQPLCVKCLDGKEVIHLEAGGYHSLALTAKSQVYSWGSNTFGQLGHSDFPTTVPRLAKMNSENGVWSVAAGQDYSLFLVDTEDFQPGLYYSGRQDPTEGDNLPENHSGTKTPVLLSCSKLGYISRVTAGKDSCLALVDKNIMGYIASLHELATTERRFYSKLSDIKSHVLRPLLSLENLGTASTVQLLQEVASRFSKLCYLIGQHGTSLSSFLQGIKEARSLVILKHASLFLDSYTEYCTSITNFLVMGGFQLLAKPAIDFLNKNQELLQDLSDMNDENTQLMEILNTLFFLPIRRLHNYAKVLLKLATCFEVTSPEYQKLQDSSSCYESLALHLGRKRKEAEYTLVFWKTFPGKMTDSLRKPERRLLCESSNRALSLQHAGRFSVNWFILFNDALVHAQFSTHHVFPLATLWAEPLSEEAGGVNGLKITTPEEQFILISSTPQEKTKWLRAISQAVDQALRGTSDLPPYGSSSSIQRQEPPISRSAKYTFYKDPRLKDATYDGRWLSGKPHGRGVLKWPDGKMYSGMFRNGLEDGYGEYRIPNKALNKEDHYVGHWKEGKMCGQGVYSYASGEVFEGCFQDNMRHGHGLLRSGKLTSSSPSMFIGQWVMDKKAGYGVFDDITRGEKYMGMWQDDACQGNGVVVTQFGLYYEGNFHLNKMMGNGVLLSEDDTIYEGEFSDDWTLSGKGTLTMPNGDYIEGYFSGEWGSGIKVTGTYFKPSLYESDKDRPKVFRKLGNLAVPADEKWKAVFDECWRQLGCENPGQGDVWKAWDNIAVALTTSRRQHRDSPEMLSRSQTQTLESLEFIPQHVGAFSVEKYDDIKRYLIKACDTPLHPLGRLVETLVAVYRMTYVGVGANRRLLQEAVKEIKSYLKRIFQLVRFLFPELPEEGSTIPLSAPLPTERKSFCTGKSDSRSESPEPGYVVTGSGLLLPVLLPRLYPPLFMLYALDNDREEDVYWECVLRLNKQPDIALLGFLGVQRKFWPATLSVLGESKKVLPTTKDACFSSAVECLQQISTTFTPSDKLKVIQQTFEEISQSVLASLQEDFLWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDPYLQHGEQGIMFTTLKACYYQIQREKLN", "length": 1538, "header": "tr|A0A287AD27-1|A0A480JSD9_PIG Computationally mapped isoform of Alsin OS=Sus scrofa OX=9823 GN=ALS2 PE=4 SV=3 CANONICAL=A0A480JSD9-1" }, "locus": { "chromosome": "15", "start_pos": 105382657, "end_pos": 105330042, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055322.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055322.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041735.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041735.3" } ] } }, { "isoform_ac": "A0A480JSD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9/entry#A0A480JSD9-1", "sequence": { "sequence": "MDSKKRSSQEAEGSKERGLVHVWQAGSCSVTPERLPGWTGKTVLQAALGVKHGVLLTEDGEVYSFGTLPWRSEPAELCPSSPILENALVGQYVVTVATGSFHSGAVTESGVVYMWGENSAGQCAVANQQYVPEPNPVSISDSETSPLLAVRILQLACGEEHTLALSISREIWAWGTGCQLGLITTTFPVTKPQKVEHLAGRVVLQVACGAFHSLALVQCLPSQDLKPVPERCNQCSQLLITMTDKEDHVIISDSHCCPLGVTLSENQASTAITPSTETLDSQGEVFENALTQNALPAATELNVGNDQTTSVQTISSPQDDMGTTEIPPARSSPPYPDPQAVNEYVQSDHSVRENSENGEKPMPSQPLVEEAIPNLHSPPTTSTSALNSLVVSCASAVGVRVAATYEAGALSLKKVMNFYSTVPCEPGAQAGSSSMGPEGLKDSREEQVKQESMQGKKSSSLVDIREEESEGGTRRLSLPGLLSQVSPRLLRRAARVKTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKDGQLGHGDVLPRLQPLCVKCLDGKEVIHLEAGGYHSLALTAKSQVYSWGSNTFGQLGHSDFPTTVPRLAKMNSENGVWSVAAGQDYSLFLVDTEDFQPGLYYSGRQDPTEGDNLPENHSGTKTPVLLSCSKLGYISRVTAGKDSCLALVDKNIMGYIASLHELATTERRFYSKLSDIKSHVLRPLLSLENLGTASTVQLLQEVASRFSKLCYLIGQHGTSLSSFLQGIKEARSLVILKHASLFLDSYTEYCTSITNFLVMGGFQLLAKPAIDFLNKNQELLQDLSDMNDENTQLMEILNTLFFLPIRRLHNYAKVLLKLATCFEVTSPEYQKLQDSSSCYESLALHLGRKRKEAEYTLVFWKTFPGKMTDSLRKPERRLLCESSNRALSLQHAGRFSVNWFILFNDALVHAQFSTHHVFPLATLWAEPLSEEAGGVNGLKITTPEEQFILISSTPQEKTKWLRAISQAVDQALRGTSDLPPYGSSSSIQRQEPPISRSAKYTFYKDPRLKDATYDGRWLSGKPHGRGVLKWPDGKMYSGMFRNGLEDGYGEYRIPNKALNKEDHYVGHWKEGKMCGQGVYSYASGEVFEGCFQDNMRHGHGLLRSGKLTSSSPSMFIGQWVMDKKAGYGVFDDITRGEKYMGMWQDDACQGNGVVVTQFGLYYEGNFHLNKMMGNGVLLSEDDTIYEGEFSDDWTLSGKGTLTMPNGDYIEGYFSGEWGSGIKVTGTYFKPSLYESDKDRPKVFRKLGNLAVPADEKWKAVFDECWRQLGCENPGQGDVWKAWDNIAVALTTSRRQHRDSPEMLSRSQTQTLESLEFIPQHVGAFSVEKYDDIKRYLIKACDTPLHPLGRLVETLVAVYRMTYVGVGANRRLLQEAVKEIKSYLKRIFQLVRFLFPELPEEGSTIPLSAPLPTERKSFCTGKSDSRSESPEPGYVVTGSGLLLPVLLPRLYPPLFMLYALDNDREEDVYWECVLRLNKQPDIALLGFLGVQRKFWPATLSVLGESKKVLPTTKDACFSSAVECLQQISTTFTPSDKLKVIQQTFEEISQSVLASLQEDFLWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDPYLQHGEQGIMFTTLKACYYQIQREKLN", "length": 1651, "header": "tr|A0A480JSD9-1|A0A480JSD9_PIG Isoform 1 of Alsin OS=Sus scrofa OX=9823 GN=ALS2 PE=4 SV=1 CANONICAL=A0A480JSD9-1" }, "locus": { "chromosome": "15", "start_pos": 105388623, "end_pos": 105330042, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099090.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099090.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079756.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079756.1" } ] } }, { "isoform_ac": "A0A8W4F8I7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9/entry#A0A8W4F8I7-1", "sequence": { "sequence": "MDSKKRSSQEAEGSKERGLVHVWQAGSCSVTPERLPGWTGKTVLQAALGVKHGVLLTEDGEVYSFGTLPWRSEPAELCPSSPILENALVGQYVVTVATGSFHSGAVTESGVVYMWGENSAGQCAVANQQYVPEPNPVSISDSETSPLLAVRILQLACGEEHTLALSISREIWAWGTGCQLGLITTTFPVTKPQKVEHLAGRVVLQVACGAFHSLALVQCLPSQDLKPVPERCNQCSQLLITMTDKEDHVIISDSHCCPLGVTLSENQASTAITPSTETLDSQGEVFENALTQNALPAATELNVGNDQTTSVQTISSPQDDMGTTEIPPARSSPPYPDPQAVNEYVQSDHSVRENSENGEKPMPSQPLVEEAIPNLHSPPTTSTSALNSLVVSCASAVGVRVAATYEAGALSLKKVMNFYSTVPCEPGAQAGSSSMGPEGLKDSREEQVKQESMQGKKSSSLVDIREEESEGGTRRLSLPGLLSQVSPRLLRRAARVKTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKDGQLGHGDVLPRLQPLCVKCLDGKEVIHLEAGGYHSLALTAKSQVYSWGSNTFGQLGHSDFPTTVPRLAKMNSENGVWSVAAGQDYSLFLVDTEDFQPGLYYSGRQDPTEGDNLPENHSGTKTPVLLSCSKLGYISRVTAGKDSCLALVDKNIMGYIASLHELATTERRFYSKLSDIKSHVLRPLLSLENLGTASTVQLLQEVASRFSKLCYLIGQHGTSLSSFLQGIKEARSLVILKHASLFLDSYTEYCTSITNFLVMGGFQLLAKPAIDFLNKNQELLQDLSDMNDENTQLMEILNTLFFLPIRRLHNYAKVLLKLATCFEVTSPEYQKLQDSSSCYESLALHLGRKRKEAEYTLVFWKTFPGKMTDSLRKPERRLLCESSNRALSLQHAGRFSVNWFILFNDALVHAQFSTHHVFPLATLWAEPLSEEAGGVNGLKITTPEEQFILISSTPQEKTKWLRAISQAVDQALRGTSDLPPYGSSSSIQRQEPPISRSAKYTFYKDPRLKDATYDGRWLSGKPHGRGVLKWPDGKMYSGMFRNGLEDGYGEYRIPNKALNKEDHYVGHWKEGKMCGQGVYSYASGEVFEGCFQDNMRHGHGLLRSGKLTSSSPSMFIGQWVMDKKAGYGVFDDITRGEKYMGMWQDDACQGNGVVVTQFGLYYEGNFHLNKMMGNGVLLSEDDTIYEGEFSDDWTLSGKGTLTMPNGDYIEGYFSGEWGSGIKVTGTYFKPSLYESDKDRPKVFPEMLSRSQTQTLESLEFIPQHVGAFSVEKYDDIKRYLIKACDTPLHPLGRLVETLVAVYRMTYVGVGANRRLLQEAVKEIKSYLKRIFQLVRFLFPELPEEGSTIPLSAPLPTERKSFCTGKSDSRSESPEPGYVVTGSGLLLPVLLPRLYPPLFMLYALDNDREEDVYWECVLRLNKQPDIALLGFLGVQRKFWPATLSVLGESKKVLPTTKDACFSSAVECLQQISTTFTPSDKLKVIQQTFEEISQSVLASLQEDFLWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDPYLQHGEQGIMFTTLKACYYQIQREKLN", "length": 1595, "header": "tr|A0A8W4F8I7-1|A0A480JSD9_PIG Computationally mapped isoform of Alsin OS=Sus scrofa OX=9823 GN=ALS2 PE=4 SV=1 CANONICAL=A0A480JSD9-1" }, "locus": { "chromosome": "15", "start_pos": 105388623, "end_pos": 105330042, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102444.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102444.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075130.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075130.1" } ] } }, { "isoform_ac": "A0A8W4FD79-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9/entry#A0A8W4FD79-1", "sequence": { "sequence": "MYVCFLFCSRYCTSITNFLVMGGFQLLAKPAIDFLNKNQELLQDLSDMNDENTQLMEILNTLFFLPIRRLHNYAKVLLKLATCFEVTSPEYQKLQDSSSCYESLALHLGRKRKEAEYTLVFWKTFPGKMTDSLRKPERRLLCESSNRALSLQHAGRFSVNWFILFNDALVHAQTKWLRAISQAVDQALRGTSDLPPYGSSSSIQRQEPPISRSAKYTFYKDPRLKDATYDGRWLSGKPHGRGVLKWPDGKMYSGMFRNGLEDGYGEYRIPNKALNKEDHYVGHWKEGKMCGQGVYSYASGEVFEGCFQDNMRHGHGLLRSGKLTSSSPSMFIGQWVMDKKAGYGVFDDITRGEKYMGMWQDDACQGNGVVVTQFGLYYEGNFHLNKMMGNGVLLSEDDTIYEGEFSDDWTLSGKGTLTMPNGDYIEGYFSGEWGSGIKVTGTYFKPSLYESDKDRPKVLKLGNLAVPADEKWKAVFDECWRQLGCENPGQGDVWKAWDNIAVALTTSRRQHRDSPEMLSRSQTQTLESLEFIPQHVGAFSVEKYDDIKRYLIKACDTPLHPLGRLVETLVAVYRMTYVGVGANRRLLQEAVKEIKSYLKRIFQLVRFLFPELPEEGSTIPLSAPLPTERKSFCTGKSDSRSESPEPGYVVTGSGLLLPVLLPRLYPPLFMLYALDNDREEDVYWECVLRLNKQPDIALLGFLGVQRKFWPATLSVLGESKKVLPTTKDACFSSAVECLQQISTTFTPSDKLKVIQQTFEEISQSVLASLQEDFLWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDPYLQHGEQGIMFTTLKACYYQIQREKLN", "length": 836, "header": "tr|A0A8W4FD79-1|A0A480JSD9_PIG Computationally mapped isoform of Alsin OS=Sus scrofa OX=9823 GN=ALS2 PE=4 SV=1 CANONICAL=A0A480JSD9-1" }, "locus": { "chromosome": "15", "start_pos": 105361255, "end_pos": 105330042, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101599.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101599.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076265.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076265.1" } ] } }, { "isoform_ac": "A0A8W4FH95-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9/entry#A0A8W4FH95-1", "sequence": { "sequence": "MDSKKRSSQEAEGSKERGLVHVWQAGSCSVTPERLPGWTGKTVLQAALGVKHGVLLTEDGEVYSFGTLPWRSEPAELCPSSPILENALVGQYVVTVATGSFHSGAVTESGVVYMWGENSAGQCAVANQQYVPEPNPVSISDSETSPLLAVRILQLACGEEHTLALSISREIWAWGTGCQLGLITTTFPVTKPQKVEHLAGRVVLQVACGAFHSLALVQCLPSQDLKPVPERCNQCSQLLITMTDKEDHVIISDSHCCPLGVTLSENQASTAITPSTETLDSQGEVFENALTQNALPAATELNVGNDQTTSVQTISSPQDDMGTTEIPPARSSPPYPDPQAVNEYVQSDHSVRENSENGEKPMPSQPLVEEAIPNLHSPPTTSTSALNSLVVSCASAVGVRVAATYEAGALSLKKVMNFYSTVPCEPGAQAGSSSMGPEGLKDSREEQVKQESMQGKKSSSLVDIREEESEGGTRRLSLPGLLSQVSPRLLRRAARVKTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKDGQLGHGDVLPRLQPLCVKCLDGKEVIHLEAGGYHSLALTAKSQVYSWGSNTFGQLGHSDFPTTVPRLAKMNSENGVWSVAAGQDYSLFLVDTEDFQPGLYYSGRQDPTEGDNLPENHSGTKTPVLLSCSKLGYISRVTAGKDSCLALVDKNIMGYIASLHELATTERRFYSKLSDIKSHVLRPLLSLENLGTASTVQLLQEVASRFSKLCYLIGQHGTSLSSFLQGIKEARSLVILKHASLFLDSYTEYCTSITNFLVMGGFQLLAKPAIDFLNKNQELLQDLSDMNDENTQLMEILNTLFFLPIRRLHNYAKVLLKLATCFEVTSPEYQKLQDSSSCYESLALHLGRKRKEAEYTLVFWKTFPGKMTDSLRKPERRLLCESSNRALSLQHAGRFSVNWFILFNDALVHAQFSTHHVFPLATLWAEPLSEEAGGVNGLKITTPEEQFILISSTPQEKTKWLRAISQAVDQALRGTSDLPPYGSSSSIQRQEPPISRSAKYTFYKDPRLKDATYDGRWLSGKPHGRGVLKWPDGKMYSGMFRNGLEDGYGEYRIPNKALNKEDHYVGHWKEGKMCGQGVYSYASGEVFEGCFQDNMRHGHGLLRSGKLTSSSPSMFIGQWVMDKKAGYGVFDDITRGEKYMGMWQDDACQGNGVVVTQFGLYYEGNFHLNKMMGNGVLLSEDDTIYEGEFSDDWTLSGKGTLTMPNGDYIEGYFSGEWGSGIKVTGTYFKPSLYESDKDRPKVFRKLGNLAVPADEKWKAVFDECWRQLGCENPGQGDVWKAWDNIAVALTTSRRQHRDSPEMLSRSQTQTLESLEFIPQHVGAFSVEKYDDIKRYLIKACDTPLHPLGRLVETLVAVYRMTYVGVGANRRLLQEAVKEIKSYLKRIFQLVRFLFPELPEEGSTIPLSAPLPTERKSFCTGKSDSRSESPEPGKFWPATLSVLGESKKVLPTTKDACFSSAVECLQQISTTFTPSDKLKVIQQTFEEISQSVLASLQEDFLWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDPYLQHGEQGIMFTTLKACYYQIQREKLN", "length": 1592, "header": "tr|A0A8W4FH95-1|A0A480JSD9_PIG Computationally mapped isoform of Alsin OS=Sus scrofa OX=9823 GN=ALS2 PE=4 SV=1 CANONICAL=A0A480JSD9-1" }, "locus": { "chromosome": "15", "start_pos": 105388623, "end_pos": 105330042, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095998.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095998.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078807.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078807.1" } ] } }, { "isoform_ac": "F1SI31-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9/entry#F1SI31-1", "sequence": { "sequence": "MDSKKRSSQEAEGSKERGLVHVWQAGSCSVTPERLPGWTGKTVLQAALGVKHGVLLTEDGEVYSFGTLPWRSEPAELCPSSPILENALVGQYVVTVATGSFHSGAVTESGVVYMWGENSAGQCAVANQQYVPEPNPVSISDSETSPLLAVRILQLACGEEHTLALSISREIWAWGTGCQLGLITTTFPVTKPQKVEHLAGRVVLQVACGAFHSLALVQCLPSQDLKPVPERCNQCSQLLITMTDKEDHVIISDSHCCPLGVTLSENQASTAITPSTETLDSQGEVFENALTQNALPAATELNVGNDQTTSVQTISSPQDDMGTTEIPPARSSPPYPDPQAVNEYVQSDHSVRENSENGEKPMPSQPLVEEAIPNLHSPPTTSTSALNSLVVSCASAVGVRVAATYEAGALSLKKVMNFYSTVPCEPGAQAGSSSMGPEGLKDSREEQVKQESMQGKKSSSLVDIREEESEGGTRRLSLPGLLSQVSPRLLRRAARVKTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKDGQLGHGDVLPRLQPLCVKCLDGKEVIHLEAGGYHSLALTAKSQVYSWGSNTFGQLGHSDFPTTVPRLAKMNSENGVWSVAAGQDYSLFLVDTEDFQPGLYYSGRQDPTEGDNLPENHSGTKTPVLLSCSKLGYISRVTAGKDSCLALVDKNIMGYIASLHELATTERRFYSKLSDIKSHVLRPLLSLENLGTASTVQLLQEVASRFSKLCYLIGQHGTSLSSFLQGIKEARSLVILKHASLFLDSYTEYCTSITNFLVMGGFQLLAKPAIDFLNKNQELLQDLSDMNDENTQLMEILNTLFFLPIRRLHNYAKVLLKLATCFEVTSPEYQKLQDSSSCYESLALHLGRKRKEAEYTLVFWKTFPGKMTDSLRKPERRLLCESSNRALSLQHAGRFSVNWFILFNDALVHAQFSTHHVFPLATLWAEPLSEEAGGVNGLKITTPEEQFILISSTPQEKTKWLRAISQAVDQALRGTSDLPPYGSSSSIQRQEPPISRSAKYTFYKDPRLKDATYDGRWLSGKPHGRGVLKWPDGKMYSGMFRNGLEDGYGEYRIPNKALNKEDHYVGHWKEGKMCGQGVYSYASGEVFEGCFQDNMRHGHGLLRSGKLTSSSPSMFIGQWVMDKKAGYGVFDDITRGEKYMGMWQDDACQGNGVVVTQFGLYYEGNFHLNKMMGNGVLLSEDDTIYEGEFSDDWTLSGKGTLTMPNGDYIEGYFSGEWGSGIKVTGTYFKPSLYESDKDRPKVFRKLGNLAVPADEKWKAVFDECWRQLGCENPGQGDVWKAWDNIAVALTTSRRQHRDSPEMLSRSQTQTLESLEFIPQHVGAFSVEKYDDIKRYLIKACDTPLHPLGRLVETLVAVYRMTYVGVGANRRLLQEAVKEIKSYLKRIFQLVRFLFPELPEEGSTIPLSAPLPTERKSFCTGKSDSRSESPEPGYVVTGSGLLLPVLLPRLYPPLFMLYALDNDREEDVYWECVLRLNKQPDIALLGFLGVQRKFWPATLSVLGESKKVLPTTKDACFSSAVECLQQISTTFTPSDKLKVIQQTFEEISQSVLASLQEDFLWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDPYLQHGEQGIMFTTLKVSLVVFC", "length": 1646, "header": "tr|F1SI31-1|A0A480JSD9_PIG Computationally mapped isoform of Alsin OS=Sus scrofa OX=9823 GN=ALS2 PE=4 SV=5 CANONICAL=A0A480JSD9-1" }, "locus": { "chromosome": "15", "start_pos": 105388623, "end_pos": 105332654, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017539.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017539.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017067.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017067.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SI31", "url": "https://www.uniprot.org/uniprotkb/F1SI31" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100626864", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626864", "resource": "KEGG Pathway" }, { "id": "R-SSC-8876198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "resource": "Reactome", "description": "RAB GEFs exchange GTP for GDP on RABs" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MQL5-1", "protein_name": "Alsin", "gene_name": "Als2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDSKTKSSTEAEGSKERGLVHVWQAGSFSLTPERLPGWGGKTVLQAALGVRHGVLLTEDGEVYSFGTLPWKSESAEICPSRPLLESALVGHHVVMVAAGSFHSGAVTESGVVYMWGENAAGQCAVANQQYVPEPSPVSISDSETSPLLAVRILQLACGEEHTLALSISREIWAWGTGCQLGLITTTFPVTKPQKVEHLAGRVVLQVACGAFHSLALVQCLPPQDLKPVPERCNQCSQLLITMTDKEDHVIISDSHCCPLGVTLSESQAATSPHTETLDGQAEVFENTSVEAELNVGNVETTSGNVTSSQQNIMGTAEVSSARTAPTYPDTQAVTAYLQKLSEHPVRENREHGEKPPQDQPPVEVVPDLHSPPTTSTSALNSLVVSCASAVGVRVAATYEAGALSLKKVMNFYSTAPGETGAQSGSAPTGPESLKDLREEQVKQESMQGKKSSSLVDIREEESEGGSRRLSLPGLLSQVSPRLLRKAARVKTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKEGQLGHGDVLPRLQPLCVKCLDGKEVIHLEAGGSHSLALTAKSQVYSWGSNTFGQLGHSDFPTTVPRLSKVSSENGVWSVAAGQDYSLFLVDTEDFQPGLYYSGRQDPEEGDTLPENPSGTKTPVLLSCSKLGYISRVTAGKDSYLALADKNIMGYIASLHELATTERRFYSKLSEIKSQILRPLLSLENLGTVTTVQLLQEVASRFSKLCYLIGQHGASLSSFLQGVKEARSLVIMKHSSLFLDSYTEYCTSVSNFLVMGGFQLLAKPAIDFLNKNQELLQDLSEVNNENTQLMEILNTLFFLPIRRLHNYAKVLLKLATCFEVASPEYQMLQDSSSCYESLALHLGRKRKEAEYTLGFWKTFPGKMTDSLRKPERRLLCESSNRALSLQHAGRFSVNWFILFNDALVHAQFSTHHVFPLATLWAEPLSEEAGSVNGLKITTPEEQFTLISSTPQEKTKWLRAISQAVDQALRGTSDFPIYGVGSSVQRQEPPISRSAKYTFYKDPRLKDATYDGRWLSGKPHGRGVLKWPDGKMYSGMFRNGLEEGYGEYRIPNKTLNKEDHYVGHWKEGKMCGQGVYSYASGEVFEGCFQDNMRHGHGLLRSGKLTSSSPSMFIGQWVMDKKAGYGVFDDITRGEKYMGMWQDDVCQGNGVVVTQFGLYYEGNFHLNKMMGNGVLLSEDDTIYEGEFSDDWTLSGKGTLTMPNGDYIEGYFSGEWGSGIKITGTYFKPSLYESDKDRPKAFRKLGNLAVAADEKWKAVFDECWHQLGCESPGQGEVWKAWDNIAVALTTNRRQHRDSPEILSRSQTQTLESLEYIPQHVGAFSVEKYDNIKKYLIKACDTPLHPLGRLVETLVAVYRMTYVGVGANRRLLQEAVKEIKSYLKRIFQLVRFLFPELPEEGSTIPLSAPPPTGRRSFCTGKSESTSESPEPGYVVTSSGLVLPVLLPRLYPPLFMLYALDNDREEDIYWECVLRLNKQADIALLGFLGVQRKFWPATLSILGESKKVLPTTRDACFASAVECLQQISTTFTPSDKLKVIQQTFEEISQSVLASLQEDFLWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDPYLQHGEQGIMFTTLKACYYQIQREKLN", "length": 1644 }, "evidence": [ { "id": "A0A480JSD9", "url": "https://omabrowser.org/oma/group/A0A480JSD9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V1A5Z0-1", "protein_name": "Alsin Rho guanine nucleotide exchange factor ALS2", "gene_name": "ALS2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDSQERSSEEAEGAKERGLVYTWRAGSCSVTPERLPGLCGKTVLQAALGTNHGLLLTEGGEVYSFGKLPWRSGPEEFCANSPILENTLLGQHVITVAAGSFHNGAVTEGGVVYMWGNNSSGQCAVANQPYVPEPQPISISDSETSPLLSVRVLQLACGEEHTLALSLSREIWAWGSGCQLGLITTTFPVTKPQKVEHLAGRVVLQIACGAYHSLALVQCLPVQEMKPIPERCNHCSQLLITMTDKEDHVIISDSHCCPLGVALADKQPENHAFCSSLENLEGKSVTGSQSEDCKKPLVEEHTLVALESDGASLLSSNNGQEDSGISSPGNILCTDKKEVKEYLIGLSDHTLNESLEKNICTESEQPSQGEQIGACIPGPPGTSASALNSLVASCASAVGVRVAATYEAGALSLKKVMNFYGTPANEPGPQPGSGSTGPEALKDSREEQVKLESMQGKKSSSLVDIREEESEGGSRRLSLPGLLSQVSPRLLRKVGRAKMRTVALTPTYSGEADALLPSLRTEVWSWGRGKDGQLGHGDVLPRLQPLCVKSLDGKEVIQLSAGGHHSLALTAKSQVYSWGSNIFGQLGHTNSPTTVPRLAKVCGDGVWSTAAGSDYSLFLADEEDFQPGLYYCGQETATDNLSENNCSKNPVLLLSCSKIGYISNVIAGGDNCLVLVDKNIMGYIASLHELASTERRFYFRLSEIKSQVLRPLLGLDNLGNANTIQLLQEMASRFSKLCYLIGQHGASLSSFLHGVKEARSLAILKHSSLFLDSYTEYCTSITNFLVMGGFMLLAKPAIDFLSKSQELLQKLSEYNEENPQLVDVLNALFFMPFGRLHDYARTLLKLATCFEVASPEYQKLQDSSSCYETLAVHLGRKRKEAEYTLSFWKTFPGKMTDSLRKPDRRLICESSNRGLSLQHAGRFSVNWFILFNDALVHAQFSTHHIFALSTLWVEALSEEAGNVNGLKITTPEEQFVLLSSTPQEKTKWLRAISQAVDQALKGTSDLILYGAGGNVPRQEPPISRSAKYAFYKDPRFKDAVYDGRWLSGKPHGRGILKWADGRMYSGTFRTGLEDGYGEYRVPNKALNKDDHYVGYWKEGKMCGHGVYSYATGEVYEGCFQDNMRHGHGLLRSGKLTSSSPSMFIGQWTMDKKSGYGVFDDITRGEKYMGMWQDDLCQGNGVVVTQFGLYYEGAFSTNKMMGTGILLSEDDTVYEGEFSDNWTLSGKGTLTLPNGDYIEGLFSGEWGSGIKITGTYFKPSLYESEKDKPKALRKLGILAVPPDEKWKAVFEECWNQLGCESPGEGDRWKAWDNIAVALTTNRRQHKDSPELLSRSHTQTLESLEFIPQHVGAFTLEKYENIKKYLIKACDTPLHPLGKLVETLVAVYRMTYVGVGANRRLLQEAVREIKSYLKRIFQLVRFLFPDLPEEGSTIPFQPTEVKGRRSFCSGKSDSRSESPEPGYVVTSFGLLLPVLLPRLYPPLFMLYALDNEREEDIYWECVLRLNKQTDMALLSFLGVQAKFWPGTVSILGESRKVSSNTKDACFASAVECLQQISTTFTPADKLKVIQQTFEEISQNVLESLQEDFLWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDPYLQHGEQGIMFTTLKACYYQIQHEKLT", "length": 1649 }, "evidence": [ { "id": "A0A480JSD9", "url": "https://omabrowser.org/oma/group/A0A480JSD9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1MDF3-1", "protein_name": "Alsin", "gene_name": "ALS2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDSKKKSSTEAEGSKERGLVHVWQAGSCSVTPERLPGWGGKTVLHAALGVKHGVLLTEDGEVYSFGTLPWRSEPAETCPSNPILESALVGQYVVTVATGSFHTGAVTDSGVVYMWGENSAGQCAVANQPYVPEPNPVSISDSETSPLLAVRILQLACGEEHTLALSLSREIWAWGTGCQLGLITTTFPVTKPQKVEHLAGRVVLQVACGAFHSLALVQCLPSQDLKPVPERCNQCSQLLITMTDKEDHVIISDSHCCPLGVTLSESQAEIQASTTVSPSSETLDTQGEVFENTLVQNEPPAATELNVGNVQTASVQTTSFPQDIMGTTEVSSASRPSYPDTQAVNEYVQKLSDHSVRESSENGEKPVPSQPLVEEAIPNLHSPPTTSTSALNSLVVSCASAVGVRVAATYEAGALSLKKVMNFYNTAPCEPGALAGSSSIGPEGLKDSREEQVKQESMQGKKSSSLVDIREEESEGGSRRLSLPGLLSQVSPRLLRKAARVKTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKEGQLGHGDVLPRLQPLCVKCLDGKEVIHLEAGGYHSLALTAKSQVYSWGSNTFGQLGHSDFPTTVPRLAKVNSENGVWSVAAGQDYSLFLVDTEDFQPGLCYSGRLDPTEGDNLPENHSGTKMPVLLSCSKLGYISRVTAGKDSYLALVDKNIMGYIASLHELATTERRFYSKLSDIKSQILRPLLGLENLGTANTVQLLQEVASRFSKLCYLIGQHGTSLSSFLQGIKEARSLVILKHASLFLDSYTEYCTSITNFLVMGGFQLLAKPAIDFLNKNQELLQDLSEVDEENTQLMEILNTLFFLPIRRLHSYAKVLLKLATCFEVTSPEYQKLQDSSSCYESLALHLGRKRKEAEYTLSFWKTFPGKMTDSLRKPERRLLCESSNRALSLQHAGRFSVNWFILFNDALVHAQFSTHHVFPLATLWAEPLSEEAGGVNGLKITTPEEQFTLISSTPQEKTKWLRAISQAVDQALRGMSDLPPYGSGSSIQRQEPPISRSAKYTFYKDPRLKDATYDGRWLSGKPHGRGVLKWPDGKMYSGMFRNGLEDGYGEYRIPNKALNKEDHYVGHWKEGKMCGQGVYSYASGEVFEGCFQDNMRHGHGLLRSGKLTSSSPSMFIGQWVMDKKAGYGVFDDITRGEKYMGLWQDDVCQGNGVVVTQFGLYYEGNFHLNKMMGNGVLLSEDDTIYEGEFSDDWTLSGKGTLTMPNGDYIEGYFSGEWGSGIKITGTYFKPSLYESDKDRPKVFRKLGNLAVPADEKWKAVFDECWHQLGCENPGQGEVWKAWDNIAVALTTNRRQHRDSPEILSRSQTQTLESLEFIPQHVGAFSVEKYDDIKKYLIKACDTPLHPLGRLVETLVAVYRMTYVGVGANRRLLQEAVKEIKSYLKRIFQLVRFLFPELPEEGSTIPLSAPLPTERKSFCTGKSDSRSESPEPGYVVTGSGLLLPVLLPRLYPPLFMLYALDNDREEDVYWECVLRLNKQTDLALLGFLGVQRKFWPVTLSVLGENKKVLPTTKDACFASAVECLQQISTTFTPSDKLKVIQQTFEEISQSVLASLQEDFLWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDPYLQHGEQGIMFTTLKACYYQIQREKLN", "length": 1656 }, "evidence": [ { "id": "A0A480JSD9", "url": "https://omabrowser.org/oma/group/A0A480JSD9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C5Y8-1", "protein_name": "Alsin", "gene_name": "Als2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKKKSSAEAEGSKERGLVHVWQAGSFSLTPERLPGWGGKTVLQAALGVKHGVLLTEDGEVYSFGTLPWKSEAAEICPSSPLLESALVGHHVVTVATGSFHSGAVTESGVVYMWGENAAGQCAVANQQYVSEPSPVSISDSETSPLLAVRILQLACGEEHTLALSISREIWAWGTGCQLGLITTTFPVTKPQKVEHLAGRVVLQVACGAFHSLALVQCLPPQDLKPVPERCNQCSQLLITMTDKEDHVIISDSHCCPLGVTLSESQAEKHASTVTSPHPETLDGQGEVFENTVAEAELNMGSDQTTSGSAISAQQNIVGMAEVSSARTAPSYPDTQTVTAYLQKLSEHSVKENHEREEKLPQVQPLVEEAVPDLHSPPTTSTSALNSLVVSCASAVGVRVAATYEAGALSLKKVMNFYSTAPCEPGAPSGTASTGPESLKDLREEQVKQESLQGKKSSSLMDIREEESEGGSRRLSLPGLLSQVSPRLLRKAARVKTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKEGQLGHGDVLPRLQPLCVKCLDGKEVIHLEAGGSHSLALTAKSQVYSWGSNTFGQLGHSEFPTTVPRLSKVSSESGVWSVAAGHGYSLFLVDTEDFQPGLYYSGRQDRAEGDTLPENPSGTTTPVLLSCSKLGYISRVTAGKDSYLALVDKNIMGYIASLHELATTERRFYSKLSEIKSQILRPLLSLEHLGTVTTVQLLQEVASRFSKLCYLIGQHGASLSSYLQGMKEARNLVIMKHSSLFLDSYTEYCTSVSNFLVMGGSQLLAKPAIDFLNKNQELLQDLSEVNDENTQLMEILNALFFLPIRRLHNYAKVLLKLATCFEVTSPEYQKLQDSSSCYESLALHLGKKRKEAEYTLSFWKTFPGKMTDSLRKPERRLLCESSNRALSLQHAGRFSVNWFILFNDALVHAQFSTHHVFPLATLWAEPLSEETGGVNGLKITTPEEQFTLISSTPQEKTKWLRAISQAVDQALRGTSDFPLYGGSSTVQRQEPPISRSAKYTFYKDTRLKDATYDGRWLSGKPHGRGVLKWPDGKVYSGTFRNGLEDGYGEYRIPNKALNKEDHYVGHWKEGKMCGQGVYSYASGEVFEGCFQDNMRHGHGLLRSGKLTSSSPSMFIGQWVMDKKAGYGVFDDITRGEKYMGMWQDDACQGNGVVVTQFGLYYEGNFHLNKMMGNGVLLSEDDTIYEGEFSDDWTLCGKGTLTMPNGDYIEGYFSGEWGSGIKITGTYFKPSLYESDKDRPKAFRKLGNLAVAADEKWRAVFDECWRQLGCESPGQGEVWKAWDNIAVALTTNRRQHKDSPEILSRSQTQTLESLEYIPQHVGAFSVEKYDDIKKYLIKACDTPLHPLGRLVETLVAVYRMTYVGVGANRRLLQEAVKEIKSYLKRIFQLVRFLFPELPEEGSTVPLSAPLPTGRRSFCTGKSDSRSESPEPGYVVTSSGLLLPVLLPRLYPPLFMLYALDNDREEDIYWECVLRLNKQPDIALLGFLGVQRKFWPATLSILGESKKVLPSTKDACFASAVECLQQISTTFTPSDKLKVIQQTFEEISQSVLASLQEDFLWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDPYLQHGEQGIMFTTLKACYYQIQREKLN", "length": 1651 }, "evidence": [ { "id": "A0A480JSD9", "url": "https://omabrowser.org/oma/group/A0A480JSD9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q920R0-1", "protein_name": "Alsin", "gene_name": "Als2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"length": 1651 }, "evidence": [ { "id": "A0A480JSD9", "url": "https://omabrowser.org/oma/group/A0A480JSD9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96Q42-1", "protein_name": "Alsin", "gene_name": "ALS2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"length": 1657 }, "evidence": [ { "id": "A0A480JSD9", "url": "https://omabrowser.org/oma/group/A0A480JSD9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 12, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "postsynaptic density", "id": "GO:0014069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014069", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "lamellipodium", "id": "GO:0030027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030027", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "dendritic spine", "id": "GO:0043197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043197", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "ruffle", "id": "GO:0001726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001726", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "protein serine/threonine kinase activator activity", "id": "GO:0043539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043539", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "neuron projection morphogenesis", "id": "GO:0048812", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048812", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "endosomal transport", "id": "GO:0016197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016197", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "regulation of endosome size", "id": "GO:0051036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051036", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" }, { "name": "regulation of postsynaptic membrane neurotransmitter receptor levels", "id": "GO:0099072", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099072", "evidence": [ { "database": "UniProtKB", "id": "A0A480JSD9", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 646, "end_pos": 648, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480JSD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 684, "end_pos": 879, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A480JSD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 968, "end_pos": 999, "start_aa": "Leu", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A480JSD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JSD9" }, { "id": "PS51205", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51205" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VPS9", "eco_id": "ECO_0000259", "start_pos": 1507, "end_pos": 1651, "start_aa": "Lys", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 646, "end_pos": 648 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480IRZ7-1", "uniprot_ac": "A0A480IRZ7", "uniprot_id": "A0A480IRZ7_PIG", "mass": { "chemical_mass": 91962.0, "monoisotopic_mass": 91962.0 }, "refseq": { "ac": "XP_013852742", "name": "sortilin isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852742" }, "gene_names": [ { "name": "SORT1", "type": "recommended", "evidence": [ { "id": "A0A480IRZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7" } ] }, { "name": "SORT1", "type": "synonym", "evidence": [ { "id": "XP_013852742", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852742" } ] } ], "protein_names": [ { "name": "Sortilin", "type": "recommended", "evidence": [ { "id": "A0A480IRZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7/entry#names_and_taxonomy" } ] }, { "name": "Neurotensin receptor 3", "type": "synonym", "evidence": [ { "id": "A0A480IRZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7/entry#names_and_taxonomy" } ] }, { "name": "sortilin isoform X3", "type": "synonym", "evidence": [ { "id": "XP_013852742", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852742" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480IRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SORT1", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7", "locus": { "chromosome": "4", "start_pos": 110789070, "end_pos": 110720947, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006831", "url": "https://www.ensembl.org/id/ENSSSCG00000006831" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006831", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006831", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "106504120", "url": "https://www.ncbi.nlm.nih.gov/gene/106504120", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006581", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006581", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031777", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031777", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031778", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031778", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050310", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050310", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106504120", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504120", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A480IRZ7", "url": "https://www.orthodb.org/?gene=A0A480IRZ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12106", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12106", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12106:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12106:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15901", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15901", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15902", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15902", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-432722", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432722", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013852742", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852742", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZSA0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZSA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSA0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480IRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480IRZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S5Z7", "url": "https://www.uniprot.org/uniprotkb/F1S5Z7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S5Z7-1", "url": "https://www.uniprot.org/uniprotkb/F1S5Z7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERPRGAAQGLSRWPHGLGLLLLLLLQLLPPASLGQDRLDAPPPPAAPLSRWSGPVGVSWGLRAAAPGGPVPRGGRWRRSALDEDEDCGGVRDFVARLANNTHQHVFDDLSGSVSLSWVGDSTGIILVLTTFHVPLVIMTFGQSKLYRSEDYGKNFKDITNLINNTFIRTEFGMAIGPENSGKVILTAEVSGGSHGGRIFRSSDFAKNFIQTNLPFHPLTQMMYSPQNSDHLLALSTENGLWVSKNFGGKWEEIHKAVCLAKWGSDSTIFFTTYVNGSCKADLGALELRRTSDLGKSFKTIGVKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYMTSVLSEDNSIQTMITFDQGGRWKHLRKPENSECDATAKNKNECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHGSVGDAISVMIPDVYISDDGGYSWLKMLEGPHYYTILDSGGIIVAIEHSSHPINVIKFSTDEGQCWQTYVFSREPIYFTGLASEPGARSMNISIWGFTESFLTRQWVSYTIDFKDILERNCEEKDYTVWLAHSTDPGDYGDGCILGYKEQYLRLRKSSVCQNGRDYVVTKQPSVCPCSLEDFLCDFGYFRPENDSKCVEQPELKGHDLEFCLYGREEHLTTNGYRKIPGDRCQGGVNPAREVKDLKKKCTSNFLSPEKQNSKSSSVPIILATVGLMLVTVVAGVLIVKKYVCGGRFLVHRYSVLQQHAEANGVDGVDALDTASHTTKSGYHDDSDEDLLE", "length": 833, "header": "tr|A0A480IRZ7-1|A0A480IRZ7_PIG Isoform 1 of Sortilin OS=Sus scrofa OX=9823 GN=SORT1 PE=1 SV=1 CANONICAL=A0A480IRZ7-1" }, "isoforms": [ { "isoform_ac": "A0A286ZSA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7/entry#A0A286ZSA0-1", "sequence": { "sequence": "MTSAVSATFQPISPASWHPNPGPPKQEAPRANQQWTGEERQAASLWAERSGLAYPGSAGSSKGGEGGRRRRGWAGAPGGRCRRRRHSAAMERPRGAAQGLSRWPHGLGLLLLLLLQLLPPASLGQDRLDAPPPPAAPLSRWSGPVGVSWGLRAAAPGGPVPRGGRWRRSALDEDEDCGGVRDFVARLANNTHQHVFDDLSGSVSLSWVGDSTGIILVLTTFHVPLVIMTFGQSKLYRSEDYGKNFKDITNLINNTFIRTEFGMAIGPENSGKVILTAEVSGGSHGGRIFRSSDFAKNFIQTNLPFHPLTQMMYSPQNSDHLLALSTENGLWVSKNFGGKWEEIHKAVCLAKWGSDSTIFFTTYVNGSCKADLGALELRRTSDLGKSFKTIGVKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYMTSVLSEDNSIQTMITFDQGGRWKHLRKPENSECDATAKNKNECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHGSVGDAISVMIPDVYISDDGGYSWLKMLEGPHYYTILDSGGIIVAIEHSSHPINVIKFSTDEGQCWQTYVFSREPIYFTGLASEPGARSMNISIWGFTESFLTRQWVSYTIDFKDILERNCEEKDYTVWLAHSTDPGDYGDGCILGYKEQYLRLRKSSVCQNGRDYVVTKQPSVCPCSLEDFLCDFGYFRPENDSKCVEQPELKGHDLEFCLYGREEHLTTNGYRKIPGDRCQGGVNPAREVKDLKKKCTSNFLSPEKQDSRPQGHNLSQNPAPPPLGYTENTHSLSPTQKQNSKSSSVPIILATVGLMLVTVVAGVLIVKKYVCGGRFLVHRYSVLQQHAEANGVDGVDALDTASHTTKSGYHDDSDEDLLE", "length": 955, "header": "tr|A0A286ZSA0-1|A0A480IRZ7_PIG Computationally mapped isoform of Sortilin OS=Sus scrofa OX=9823 GN=SORT1 PE=1 SV=1 CANONICAL=A0A480IRZ7-1" }, "locus": { "chromosome": "4", "start_pos": 110786891, "end_pos": 110720947, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063798.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063798.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034340.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034340.2" } ] } }, { "isoform_ac": "A0A480IRZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7/entry#A0A480IRZ7-1", "sequence": { "sequence": "MERPRGAAQGLSRWPHGLGLLLLLLLQLLPPASLGQDRLDAPPPPAAPLSRWSGPVGVSWGLRAAAPGGPVPRGGRWRRSALDEDEDCGGVRDFVARLANNTHQHVFDDLSGSVSLSWVGDSTGIILVLTTFHVPLVIMTFGQSKLYRSEDYGKNFKDITNLINNTFIRTEFGMAIGPENSGKVILTAEVSGGSHGGRIFRSSDFAKNFIQTNLPFHPLTQMMYSPQNSDHLLALSTENGLWVSKNFGGKWEEIHKAVCLAKWGSDSTIFFTTYVNGSCKADLGALELRRTSDLGKSFKTIGVKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYMTSVLSEDNSIQTMITFDQGGRWKHLRKPENSECDATAKNKNECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHGSVGDAISVMIPDVYISDDGGYSWLKMLEGPHYYTILDSGGIIVAIEHSSHPINVIKFSTDEGQCWQTYVFSREPIYFTGLASEPGARSMNISIWGFTESFLTRQWVSYTIDFKDILERNCEEKDYTVWLAHSTDPGDYGDGCILGYKEQYLRLRKSSVCQNGRDYVVTKQPSVCPCSLEDFLCDFGYFRPENDSKCVEQPELKGHDLEFCLYGREEHLTTNGYRKIPGDRCQGGVNPAREVKDLKKKCTSNFLSPEKQNSKSSSVPIILATVGLMLVTVVAGVLIVKKYVCGGRFLVHRYSVLQQHAEANGVDGVDALDTASHTTKSGYHDDSDEDLLE", "length": 833, "header": "tr|A0A480IRZ7-1|A0A480IRZ7_PIG Isoform 1 of Sortilin OS=Sus scrofa OX=9823 GN=SORT1 PE=1 SV=1 CANONICAL=A0A480IRZ7-1" }, "locus": { "chromosome": "4", "start_pos": 110786891, "end_pos": 110721214, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065281.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065281.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037889.3", "url": "https://www.ensembl.org/id/ENSSSCP00000037889.3" } ] } }, { "isoform_ac": "F1S5Z7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7/entry#F1S5Z7-1", "sequence": { "sequence": "MTFGQSKLYRSEDYGKNFKDITNLINNTFIRTEFGMAIGPENSGKVILTAEVSGGSHGGRIFRSSDFAKNFIQTNLPFHPLTQMMYSPQNSDHLLALSTENGLWVSKNFGGKWEEIHKAVCLAKWGSDSTIFFTTYVNGSCTDLGALELRRTSDLGKSFKTIGVKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYMTSVLSEDNSIQTMITFDQGGRWKHLRKPENSECDATAKNKNECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHGSVGDAISVMIPDVYISDDGGYSWLKMLEGPHYYTILDSGGIIVAIEHSSHPINVIKFSTDEGQCWQTYVFSREPIYFTGLASEPGARSMNISIWGFTESFLTRQWVSYTIDFKDILERNCEEKDYTVWLAHSTDPGDYGDGCILGYKEQYLRLRKSSVCQNGRDYVVTKQPSVCPCSLEDFLCDFGYFRPENDSKCVEQPELKGHDLEFCLYGREEHLTTNGYRKIPGDRCQGGVNPAREVKDLKKKCTSNFLSPEKQNSKSSSVPIILATVGLMLVTVVAGVLIVKKYVCGGRFLVHRYSVLQQHAEANGVDGVDALDTASHTTKSGYHDDSDEDLLE", "length": 694, "header": "tr|F1S5Z7-1|A0A480IRZ7_PIG Computationally mapped isoform of Sortilin OS=Sus scrofa OX=9823 GN=SORT1 PE=1 SV=4 CANONICAL=A0A480IRZ7-1" }, "locus": { "chromosome": "4", "start_pos": 110786891, "end_pos": 110749769, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007482.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007482.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007286.5", "url": "https://www.ensembl.org/id/ENSSSCP00000007286.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S5Z7", "url": "https://www.uniprot.org/uniprotkb/F1S5Z7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106504120", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504120", "resource": "KEGG Pathway" }, { "id": "R-SSC-432722", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432722", "resource": "Reactome", "description": "Golgi Associated Vesicle Biogenesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "nerve growth factor binding", "id": "GO:0048406", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048406", "evidence": [ { "database": "UniProtKB", "id": "A0A480IRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7" } ], "pmid": "" }, { "name": "enzyme binding", "id": "GO:0019899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019899", "evidence": [ { "database": "UniProtKB", "id": "A0A480IRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7" } ], "pmid": "" }, { "name": "neurotensin receptor activity, non-G protein-coupled", "id": "GO:0030379", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030379", "evidence": [ { "database": "UniProtKB", "id": "A0A480IRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7" } ], "pmid": "" }, { "name": "nerve growth factor receptor activity", "id": "GO:0010465", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010465", "evidence": [ { "database": "UniProtKB", "id": "A0A480IRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7" } ], "pmid": "" }, { "name": "retromer complex binding", "id": "GO:1905394", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905394", "evidence": [ { "database": "UniProtKB", "id": "A0A480IRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 15, "go_terms": [ { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "A0A480IRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A480IRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A480IRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A480IRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7" } ], "pmid": "" }, { "name": "clathrin-coated pit", "id": "GO:0005905", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005905", "evidence": [ { "database": "UniProtKB", "id": "A0A480IRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "A0A480IRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A480IRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7" } ], "pmid": "" }, { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "A0A480IRZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480IRZ7" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": 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sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RBN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBN6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519317", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519317", "resource": "KEGG Pathway" } ], "orthologs": [ { 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"MKSSSVVLTLASLVFLMCVPRSQTCNKALCASDVSKCLIQELCQCRPGEGSCPCCKECMLCLGTLWDECCDCVGMCNPRNYSDTPPTSKSTVEELHEPIPSLFRALTEGDTQLNWNIVSFPVAEELSHHENLVSFLETVNQPHHQNVSVPSNNVHAPYPSDKEHMCTVVYFDDCMSIHQCKISCESMGASKYRWFHNACCECIGPECIDYGSKTVKCMNCMF", "length": 222 }, "evidence": [ { "id": "A0A480DUX8", "url": "https://omabrowser.org/oma/group/A0A480DUX8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q9EP52-1", "protein_name": "Twisted gastrulation protein homolog 1", "gene_name": "Twsg1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSHYIVLALASLTFLLCLPVSQSCNKALCASDVSKCLIQELCQCRPGEGNCPCCKECMLCLGALWDECCDCVGMCNPRNYSDTPPTSKSTVEELHEPIPSLFRALTEGDTQLNWNIVSFPVAEELSHHENLVSFLETVNQLHHQNVSVPSNNVHAPFPSDKERMCTVVYFDDCMSIHQCKISCESMGASKYRWFHNACCECIGPECIDYGSKTVKCMNCMF", "length": 222 }, "evidence": [ { "id": "A0A480DUX8", "url": "https://omabrowser.org/oma/group/A0A480DUX8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9GZX9-1", "protein_name": "Twisted gastrulation protein homolog 1", "gene_name": "TWSG1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKLHYVAVLTLAILMFLTWLPESLSCNKALCASDVSKCLIQELCQCRPGEGNCSCCKECMLCLGALWDECCDCVGMCNPRNYSDTPPTSKSTVEELHEPIPSLFRALTEGDTQLNWNIVSFPVAEELSHHENLVSFLETVNQPHHQNVSVPSNNVHAPYSSDKEHMCTVVYFDDCMSIHQCKISCESMGASKYRWFHNACCECIGPECIDYGSKTVKCMNCMF", "length": 223 }, "evidence": [ { "id": "A0A480DUX8", "url": "https://omabrowser.org/oma/group/A0A480DUX8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W494-1", "protein_name": "Crossveinless, isoform C", "gene_name": "cv", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": 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signaling pathway", "id": "GO:0030511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030511", "evidence": [ { "database": "UniProtKB", "id": "A0A480DUX8", "url": "https://www.uniprot.org/uniprotkb/A0A480DUX8" } ], "pmid": "" }, { "name": "negative regulation of CD4-positive, alpha-beta T cell proliferation", "id": "GO:2000562", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000562", "evidence": [ { "database": "UniProtKB", "id": "A0A480DUX8", "url": "https://www.uniprot.org/uniprotkb/A0A480DUX8" } ], "pmid": "" }, { "name": "positive regulation of SMAD protein signal transduction", "id": "GO:0060391", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060391", "evidence": [ { "database": "UniProtKB", "id": "A0A480DUX8", "url": "https://www.uniprot.org/uniprotkb/A0A480DUX8" } ], "pmid": "" }, { "name": "negative regulation of cytokine production", "id": "GO:0001818", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001818", "evidence": [ { "database": "UniProtKB", "id": "A0A480DUX8", "url": "https://www.uniprot.org/uniprotkb/A0A480DUX8" } ], "pmid": "" }, { "name": "regulation of BMP signaling pathway", "id": "GO:0030510", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030510", "evidence": [ { "database": "UniProtKB", "id": "A0A480DUX8", "url": "https://www.uniprot.org/uniprotkb/A0A480DUX8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 147, "end_pos": 149, "annotation": "n_glycosylation_sequon" }, { "start_pos": 52, "end_pos": 54, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480DUX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480DUX8" }, { "id": "PF04668", "database": "Pfam", "url": 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"https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02960", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514482", "url": "https://www.ncbi.nlm.nih.gov/gene/100514482", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012336", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012336", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051099", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051099", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514482", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514482", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YSNMQKA", "url": "https://omabrowser.org/oma/group/YSNMQKA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480JTN7", "url": "https://www.orthodb.org/?gene=A0A480JTN7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15337", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15337", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15337:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15337:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13899", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13899", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231897", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231897", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480JTN7", "url": "https://www.uniprot.org/uniprotkb/A0A480JTN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480JTN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JTN7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM87", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM87-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM87-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0Z4P8", "url": "https://www.uniprot.org/uniprotkb/A0A8D0Z4P8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0Z4P8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0Z4P8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FA10", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FA10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FA10-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FA10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKISLSAFLLLVALSYTLAKDTTVKPGAKKDTKDSQPKLPQTLSRGWGDQLIWTQTYEEALYKSKTSNKPLMIIHHLDECPHSQALKKAFAENKEIQKLAEQFVLLNLVYETTDKHLSPDGQYVPRILFVDPSLTVRADITGRYSNRLYAYEPSDTALLLDNMKKALKLLKTEL", "length": 175, "header": "tr|A0A480JTN7-1|A0A480JTN7_PIG Isoform 1 of Anterior gradient 2, protein disulphide isomerase family member OS=Sus scrofa OX=9823 GN=AGR2 PE=1 SV=1 CANONICAL=A0A480JTN7-1" }, "isoforms": [ { "isoform_ac": "A0A480JTN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JTN7/entry#A0A480JTN7-1", "sequence": { "sequence": "MEKISLSAFLLLVALSYTLAKDTTVKPGAKKDTKDSQPKLPQTLSRGWGDQLIWTQTYEEALYKSKTSNKPLMIIHHLDECPHSQALKKAFAENKEIQKLAEQFVLLNLVYETTDKHLSPDGQYVPRILFVDPSLTVRADITGRYSNRLYAYEPSDTALLLDNMKKALKLLKTEL", "length": 175, "header": "tr|A0A480JTN7-1|A0A480JTN7_PIG Isoform 1 of Anterior gradient 2, protein disulphide isomerase family member OS=Sus scrofa OX=9823 GN=AGR2 PE=1 SV=1 CANONICAL=A0A480JTN7-1" }, "locus": { "chromosome": "9", "start_pos": 86050924, "end_pos": 86042317, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101222.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101222.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079841.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079841.1" } ] } }, { "isoform_ac": "A0A5G2QM87-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JTN7/entry#A0A5G2QM87-1", "sequence": { "sequence": "MEKISLSAFLLLVALSYTLAKDTTVKPGAKKDTKDSQPKLPQTLSRGWGDQLIWTQTYEEALYKSKTSNKPLMIIHHLDECPHSQALKKAFAENKEIQKLAEQFVLLNLVYETTDKHLSPDGQYVPRILFVDPSLTVRADITGRYSNRLYAYEPSDTALPLKSKKRINKIKNKK", "length": 174, "header": "tr|A0A5G2QM87-1|A0A480JTN7_PIG Computationally mapped isoform of Anterior gradient 2, protein disulphide isomerase family member OS=Sus scrofa OX=9823 GN=AGR2 PE=1 SV=1 CANONICAL=A0A480JTN7-1" }, "locus": { "chromosome": "9", "start_pos": 86050924, "end_pos": 86042772, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088694.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088694.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065992.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065992.1" } ] } }, { "isoform_ac": "A0A8D0Z4P8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JTN7/entry#A0A8D0Z4P8-1", "sequence": { "sequence": "MEKISLSAFLLLVALSYTLAKDTTVKPGAKKDTKDSQPKLPQTLSRGWGDQLIWTQTYEEALYKSKTSNKPLMIIHHLDECPHSQALKKAFAENKEIQKLAEQFVLLNLVYETTDKHLSPDGQYVPRILFVDPSLTVRADITGRYSNRLYAYEPSDTALRGSKDHITCFSGFSWTHLIPSTRAPSAVVIIPLK", "length": 193, "header": "tr|A0A8D0Z4P8-1|A0A480JTN7_PIG Computationally mapped isoform of Anterior gradient 2, protein disulphide isomerase family member OS=Sus scrofa OX=9823 GN=AGR2 PE=1 SV=1 CANONICAL=A0A480JTN7-1" }, "locus": { "chromosome": "9", "start_pos": 86050924, "end_pos": 86043438, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026717.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026717.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025061.2", "url": "https://www.ensembl.org/id/ENSSSCP00000025061.2" } ] } }, { "isoform_ac": "A0A8W4FA10-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JTN7/entry#A0A8W4FA10-1", "sequence": { "sequence": "MEKISLSAFLLLVALSYTLAKDTTVKPGAKKDTKDSQPKLPQTLSRGWGDQLIWTQTYEEALYKSKTSNKPLMIIHHLDECPHSQALKKAFAENKEIQKLAEQFVLLNLVYETTDKHLSPDGQYVPRILFVDPSLTVRADITGRYSNRLYAYEPSDTALLLDNMKKREKQNLQAPPSVLGLKTWNHRSSEKTVEKALVNILISLRFHVTTAIF", "length": 213, "header": "tr|A0A8W4FA10-1|A0A480JTN7_PIG Computationally mapped isoform of Anterior gradient 2, protein disulphide isomerase family member OS=Sus scrofa OX=9823 GN=AGR2 PE=1 SV=1 CANONICAL=A0A480JTN7-1" }, "locus": { "chromosome": "9", "start_pos": 86050924, "end_pos": 86042173, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106706.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106706.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076226.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076226.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QM87", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM87" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514482", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514482", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LCQ9-1", "protein_name": "Anterior gradient protein 2 homolog", "gene_name": "Agr2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKISVSAFLLLVALSYTLAKDTTVKPGAKKDPKDSRPKLPQTLSRGWGDQLIWTQTYEEALYKSKTSNRPLMIIHHLDECPHSQALKKVFAENKEIQKLAEQFVLLNLVYETTDKHLSPDGQYVPRILFVDPSLTVRADITGRYSNRLYAYEPSDTALLLDNMKKALKLLKTEL", "length": 175 }, "evidence": [ { "id": "A0A480JTN7", "url": "https://omabrowser.org/oma/group/A0A480JTN7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZIA7-1", "protein_name": "Anterior gradient 2, protein disulphide isomerase family member", "gene_name": "Agr2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEKFSVSAILLLVAISGTLAKDTTVKSGSKKDPKDSRPKLPQTLSRGWGDQLIWTQTYEEALYKSKTSNRPLMVIHHLDECPHSQALKKVFAENKEIQKLAEQFVLLNLIYETTDKHLSPDGQYVPRIVFVDPSLTVRADITGRYSNRLYAYEPSDTALLHDNMKKALKLLKTEL", "length": 175 }, "evidence": [ { "id": "A0A480JTN7", "url": "https://omabrowser.org/oma/group/A0A480JTN7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1C937-1", "protein_name": "Anterior gradient 2, protein disulphide isomerase family member", "gene_name": "AGR2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEKSYMSMFLLLMAISCVLAKDIGKKETKETSTKPKLPQTLSRGWGDQLIWTQTYEEALFRSKNSNKPLMIIHHLDDCPHSQALKKVFAEHKEIQKLAEKFILLNLVYETTDKNLAPDGQYVPRILFIDPSLTVRADITGRYSNRLYAYEPSDISLLYSNMQKALKLLKTEL", "length": 172 }, "evidence": [ { "id": "A0A480JTN7", "url": "https://omabrowser.org/oma/group/A0A480JTN7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1N3J3-1", "protein_name": 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"database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O95994-1", "protein_name": "Anterior gradient protein 2 homolog", "gene_name": "AGR2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEKIPVSAFLLLVALSYTLARDTTVKPGAKKDTKDSRPKLPQTLSRGWGDQLIWTQTYEEALYKSKTSNKPLMIIHHLDECPHSQALKKVFAENKEIQKLAEQFVLLNLVYETTDKHLSPDGQYVPRIMFVDPSLTVRADITGRYSNRLYAYEPADTALLLDNMKKALKLLKTEL", "length": 175 }, "evidence": [ { "id": "A0A480JTN7", "url": "https://omabrowser.org/oma/group/A0A480JTN7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5RZ65-1", "protein_name": "Anterior gradient protein 2 homolog", "gene_name": "agr2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLKGLLSVLLVMVALSSALGKPEKTTPKKEKEKRVPQTLSRGWGDQLIWAQTYEEALFWSRSKNKPLMVIFHLEDCPHSQALKKAFAEDKEIQKLADEDFVILNLVYETTDKHLSPDGQYVPRIIFVDPSMTVRADITGRYSNRMYAYEPADMKLLLSNMQRALKFLKTEL", "length": 171 }, "evidence": [ { "id": "A0A480JTN7", "url": "https://omabrowser.org/oma/group/A0A480JTN7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A480JTN7", "url": "https://www.uniprot.org/uniprotkb/A0A480JTN7" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A480JTN7", "url": "https://www.uniprot.org/uniprotkb/A0A480JTN7" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A480JTN7", "url": "https://www.uniprot.org/uniprotkb/A0A480JTN7" } ], "pmid": "" } ] 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PE=3 SV=1 CANONICAL=A0A480K188-1" }, "isoforms": [ { "isoform_ac": "A0A287ABB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K188/entry#A0A287ABB6-1", "sequence": { "sequence": "MLFMKMDLLNYQYLDKMNNNIGILCYEGEAALRGEPRLQTLPVASALTGHRTGPPPISPSKRKFSVEPGDDDLDCEGDHASKMSRIFAPHLRWGPRAKFGRPKAFLWADAGLSSCSLAMIKVRSKTANGDCRKDPRERSRSPIERAAAPTMSLHGSHLYTSLPSLSMEQPLALTKNSLDTSRPAGISPTLTPVERQQNRPSVITCASASTRNCNLSHCPVAHSGCAASPASFRRASSSATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS", "length": 327, "header": "tr|A0A287ABB6-1|A0A480K188_PIG Computationally mapped isoform of Vestigial like family member 4 OS=Sus scrofa OX=9823 GN=VGLL4 PE=3 SV=3 CANONICAL=A0A480K188-1" }, "locus": { "chromosome": "13", "start_pos": 67778406, "end_pos": 67700493, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064934.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064934.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041182.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041182.3" } ] } }, { "isoform_ac": "A0A480K188-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K188/entry#A0A480K188-1", "sequence": { "sequence": "MLFMKMDLLNYQYLDKMNNNIGILCYEGEAALRGEPRLQTLPVASALTGHRTGPPPISPSKRKFSVEPGDDDLDCEGDHASKMSRIFAPHLSKTANGDCRKDPRERSRSPIERAAAPTMSLHGSHLYTSLPSLSMEQPLALTKNSLDTSRPAGISPTLTPVERQQNRPSVITCASASTRNCNLSHCPVAHSGCAASPASFRRASSSATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS", "length": 295, "header": "tr|A0A480K188-1|A0A480K188_PIG Isoform 1 of Vestigial like family member 4 OS=Sus scrofa OX=9823 GN=VGLL4 PE=3 SV=1 CANONICAL=A0A480K188-1" }, "locus": { "chromosome": "13", "start_pos": 67778406, "end_pos": 67700493, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078595.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078595.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060457.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060457.1" } ] } }, { "isoform_ac": "A0A5G2Q9W8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K188/entry#A0A5G2Q9W8-1", "sequence": { "sequence": "MSCSRVLCPPGARAYCVRGGPEAGAPRASRRLQPGMETPLDVLSRAASLVHADDEKREAALRGEPRLQTLPVASALTGHRTGPPPISPSKRKFSVEPGDDDLDCEGDHASKMSRIFAPHLSKTANGDCRKDPRERSRSPIERAAAPTMSLHGSHLYTSLPSLSMEQPLALTKNSLDTSRPAGISPTLTPVERQQNRPSVITCASASTRNCNLSHCPVAHSGCAASPASFRRASSSATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS", "length": 324, "header": "tr|A0A5G2Q9W8-1|A0A480K188_PIG Computationally mapped isoform of Vestigial like family member 4 OS=Sus scrofa OX=9823 GN=VGLL4 PE=3 SV=2 CANONICAL=A0A480K188-1" }, "locus": { "chromosome": "13", "start_pos": 67872379, "end_pos": 67700493, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069707.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069707.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060133.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060133.2" } ] } }, { "isoform_ac": "A0A5G2QTX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K188/entry#A0A5G2QTX7-1", "sequence": { "sequence": "MSKTANGDCRKDPRERSRSPIERAAAPTMSLHGSHLYTSLPSLSMEQPLALTKNSLDTSRPAGISPTLTPVERQQNRPSVITCASASTRNCNLSHCPVAHSGCAASPASFRRASSSATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS", "length": 205, "header": "tr|A0A5G2QTX7-1|A0A480K188_PIG Computationally mapped isoform of Vestigial like family member 4 OS=Sus scrofa OX=9823 GN=VGLL4 PE=3 SV=2 CANONICAL=A0A480K188-1" }, "locus": { "chromosome": "13", "start_pos": 67708129, "end_pos": 67700493, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084340.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084340.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068396.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068396.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9W8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9W8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LFR6-1", "protein_name": "Transcription cofactor vestigial-like protein 4 isoform X1", "gene_name": "Vgll4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLFMKMDLLNYQYLDKMNNNIGVLCYEGEASLRGEPRMQTLPVASALSSHRTGPPPISPSKRKFSMEPGDKDLDCENDHVSKMSRIFSPHLNKTVNGDCRRDPRERSRSPIERAAAPAVSLHGGHLYASLPGLMEQPLALTKNSSDTGRSAVERQQNRPSVITCASAGARNCNLSHCPIAHSGCSAPASASYRRPPSATATCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDSASSSPESASRRGQPASPTAHMVSHSHSPSVVS", "length": 287 }, "evidence": [ { "id": "A0A480K188", "url": "https://omabrowser.org/oma/group/A0A480K188/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1NEM0-1", "protein_name": "Vestigial like family member 4", "gene_name": "VGLL4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLFMKMDLLNYQYLDKMNNNIGILCYEGEAALRGEPRMQSLPVSSALTNHRTGPPPISPNKRKLSMDQGDDEIDCENEHVSKMSRMFNPHLNKTANGDYRKEHRERSRSPIERAAAPTMSLHANHMYASIPSLTMDQPLALTKNSMDATRTVGITPTLTSVERQQNRPSVITCASANNRNCNLSHCPIAHSGCGSAVPAYRRPSSTTTACDPVVEEHFRRSLGKNYKEPEPVANSVSITGSVDDHFAKALGDTWLQIKAAKDGVSSSPESASRRGQSSPSSHMVNHNHSPSVVS", "length": 294 }, "evidence": [ { "id": "A0A480K188", "url": "https://omabrowser.org/oma/group/A0A480K188/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F6RV99-1", "protein_name": "Vestigial like family member 4", "gene_name": "VGLL4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLDLGCLPHPSDLQASAVAGVRSWREIPCWGRRAQPGLQECVRQSACEFCIGSWEPRRLPSGPWLQHAGASIFAVTRGLQLQHVNSYCLTWDPVPRPGTEPQPPSFGAWSLSHWTTGEVPRSHLLKGEAALRGEPRLQTLPVASALTAHRTGPPPISPSKRKFSVDPGDDDLDCDGDHASKMSRIFAPHLNKTANGDCRKDPRERSRSPIERAVAPTMSLHSGPLYASLPSLSMEQPLALTKNSLDAGRPAGLSPTLAPVERQQNRPSVITCASASARNCNLSHCPVAHSGCAAGPASYRRTPSSTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS", "length": 392 }, "evidence": [ { "id": "A0A480K188", "url": "https://omabrowser.org/oma/group/A0A480K188/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q14135-1", "protein_name": "Transcription cofactor vestigial-like protein 4", "gene_name": "VGLL4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BS85-1", "uniprot_ac": "A0A287BS85", "uniprot_id": "A0A287BS85_PIG", "mass": { "chemical_mass": 226890.0, "monoisotopic_mass": 226890.0 }, "refseq": {}, "gene_names": [ { "name": "OTOF", "type": "recommended", "evidence": [ { "id": "A0A287BS85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BS85" } ] } ], "protein_names": [ { "name": "Otoferlin", "type": "recommended", "evidence": [ { "id": "A0A287BS85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BS85/entry#names_and_taxonomy" } ] }, { "name": "Fer-1-like protein 2", "type": "synonym", "evidence": [ { "id": "A0A287BS85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BS85/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Key calcium ion sensor involved in the Ca(2+)-triggered synaptic vesicle-plasma membrane fusion and in the control of neurotransmitter release at these output synapses. Interacts in a calcium-dependent manner to the presynaptic SNARE proteins at ribbon synapses of cochlear inner hair cells (IHCs) to trigger exocytosis of neurotransmitter. Also essential to synaptic exocytosis in immature outer hair cells (OHCs). May also play a role within the recycling of endosomes.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV7#function" }, { "database": "UniProtKB", "id": "ARBA00056096", "url": "https://www.uniprot.org/uniprotkb/ARBA00056096#function" }, { "database": "UniProtKB", "id": "A0A287BS85", "url": "https://www.uniprot.org/uniprotkb/A0A287BS85#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BS85", "url": "https://www.uniprot.org/uniprotkb/A0A287BS85" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OTOF", "url": "https://www.uniprot.org/uniprotkb/A0A287BS85", "locus": { "chromosome": "3", "start_pos": 112581104, "end_pos": 112478027, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037751", "url": "https://www.ensembl.org/id/ENSSSCG00000037751" } ] } } ], "crossref": [ { "id": "ENSSSCG00000037751", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037751", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04011", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04011", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04017", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04017", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04018", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04018", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04037", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04037", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08373", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08373", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08374", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08374", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012561", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012561", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012968", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012968", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037720", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037720", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037721", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037721", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037722", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037722", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037723", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037723", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037724", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037724", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037726", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037726", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12546", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12546", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12546:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12546:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08150", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08150", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08151", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08151", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16165", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16165", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22901", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22901", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AUV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BS85", "url": "https://www.uniprot.org/uniprotkb/A0A287BS85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BS85-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS85-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALLVHLKTVSELRGRGDRIAKVTFRGQSFYSRVLENCEHVANFDETFRWPVASSIDSNEMLEIQIFNYSKVFSNKLIGTFRMVLQKVVEEKHVEVTDTLIDDNNAIIQTSLCVEVRYQAADGTVGSWDDGDFLGDESLHEEEKDSQETDGLLPGSRPSSRPPGEKSFRRAGRSVFSAMKLGKNRPHKEEPQRPDEPAVLEMEDLDRLAIRLGDGLDPDSVSLASVTALTTNVSNKRSKPDIKMEPSAGRPMDYQVSITVIEARQLVGLNMDPVVCVEVGDDKKYTSMKESTNCPYYNEYFVFDFHVSPDVMFDKIIKISVIHSKNLLRSGTLVGSFKMDVGTVYSQPEHQFHHKWAILSDPDDISAGLKGYVKCDVAVVGKGDNIKTPHKANETDEDDIEGNLLLPEGVPPERQWARFYVKIYRAEGLPRMNTSLMANVKKAFIGENKDLVDPYVQVFFAGQKGKTSVQKSSYEPLWNEQVVFTDLFPPLCKRLKVQIRDSDKVNDVAIGTHFIDLRKISNDGDKGFLPTLGPAWVNMYGSTRNYTLLDEHQDLNEGLGEGVSFRARLMLGLAVEILDTSNPELTSSTEVQLEQTTPVSESCTGKTEEFFLFGAFLEASMIDRKNGDKPITFEVTIGNYGNEVDGLSRPQRPKPRKEPGDEEEVDLIQNSSDDEPDEGGDLASVSSTPPMRPQITDRNYFHLPYLERKPCIYIKSWWPDQRRRLYNANIMDHIADKLEEGLNDVQEMIKTEKSYPERRLRGVLEELSCGCYRFLSLADKDQGHSSRTRLDRERLKSCMRELESMGQQAKTLRAQVKRHTLRDKLRLCQNFLQKLRFLADEPQHSIPDVFIWMMSNNKRIAYARVPSKDLLFSVVEEELGKDCAKVKTLFLKLPGKRGFGSAGWTVQAKLELYLWLGLSKQRKDFLCGLPCGFEEVKAAQGLGLPSFPPISLVYTKKQAFQLRAHMYQARSLFAADSSGLSDPFARVFFINQSQCTEVLNETLCPTWDQMLVFDNLELYGEAHELRDDPPIIVIEIYDQDTMGKADFMGRTFAKPLVKMADEAYCPPRFPPQLEYYQIYRGNATAGDLLAAFELLQIGPAGKADLPPINGPVDMDRGPIMPVPVGIRPVLSKYRIEVLFWGLRDLKRVNLAQVDRPRVDIECAGKGVQSSLIHNYKKNPNFNTLVKWFEVDLPENELLHPPLNIRVVDCRAFGRYTLVGSHAVSSLRRFIYRPPDRSAPNWNTSGRLPQGCCVLYKAGRPSRPAGEVVVNMEPEVPVKKLETMVQLDATSAAVVKVDVADEEKEKKKKKKGSSEEPEEEEPDESMLDWWSKYFASIDTMKEQLRQREASGIDLEEKEEMDNTEALKGPMKGKEKARAAKEEKKKRTQIPGPSQASEVPEKKKPKIDELKVYPKELEAEFDNFEDWLHTFNLLRGKTGDDEDGSTEEERIVGRFKGSLCVYKVPLPEDVSREAGYDPTYGMFQGIPSNDPINVLVRVYVVRATDLHPADINGKADPYIAIRLGKTDIRDKENYISKQLNPVFGKSFDIEASFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRFYSKHRATCGIAQTYSIHGYNIWRDPVKPSQILTRLCKEGKVDGPHFGPPGRVKVSNRVFTGPSEIEDENGQRKPTEEHVALLALRHWEDIPRVGCRLVPEHVETRPLLNPDKPGIEQGRLELWVDMFPMDMPAPGTPLDISPRKPKKYELRVIVWNTDEVVLEDDDFFTGEKSSDIFVRGWLKGQQEDKQDTDVHYHSLTGEGNFNWRYLFPFDYLAAEEKIVISRKESMFSWDETQYKIPARLTLQIWDADHFSADDFLGAIELDLNRFPRGAKTAKQCTMEMATGDVDVPLVSIFKQKRVKGWWPLLARNENDEFELTGKVEAELHLLTAEEAEKNPVGLARNEPDPLEKPNRPDTSFIWFLNPLKSAHYFLWHTYRWLLLKLLLLALLLLLLALFLYSVPGYLVKKILGA", "length": 1997, "header": "tr|A0A287BS85-1|A0A287BS85_PIG Isoform 1 of Otoferlin OS=Sus scrofa OX=9823 GN=OTOF PE=3 SV=2 CANONICAL=A0A287BS85-1" }, "isoforms": [ { "isoform_ac": "A0A287AUV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS85/entry#A0A287AUV7-1", "sequence": { "sequence": "MALLVHLKTVSELRGRGDRIAKVTFRGQSFYSRVLENCEHVANFDETFRWPVASSIDSNEMLEIQIFNYSKVFSNKLIGTFRMVLQKVVEEKHVEVTDTLIDDNNAIIQTSLCVEVRYQAADGTVGSWDDGDFLGDESLHEEEKDSQETDGLLPGSRPSSRPPGEKSFRRAGRSVFSAMKLGKNRPHKEEPQRPDEPAVLEMEDLDRLAIRLGDGLDPDSVSLASVTALTTNVSNKRSKPDIKMEPSAGRPMDYQVSITVIEARQLVGLNMDPVVCVEVGDDKKYTSMKESTNCPYYNEYFVFDFHVSPDVMFDKIIKISVIHSKNLLRSGTLVGSFKMDVGTVYSQPEHQFHHKWAILSDPDDISAGLKGYVKCDVAVVGKGDNIKTPHKANETDEDDIEGNLLLPEGVPPERQWARFYVKIYRAEGLPRMNTSLMANVKKAFIGENKDLVDPYVQVFFAGQKGKTSVQKSSYEPLWNEQVVFTDLFPPLCKRLKVQIRDSDKVNDVAIGTHFIDLRKISNDGDKGFLPTLGPAWVNMYGSTRNYTLLDEHQDLNEGLGEGVSFRARLMLGLAVEILDTSNPELTSSTEVQLEQTTPVSESCTGKTEEFFLFGAFLEASMIDRKNGDKPITFEVTIGNYGNEVDGLSRPQRPKPRKEPGDEEEVDLIQNSSDDEPDEGGDLASVSSTPPMRPQITDRNYFHLPYLERKPCIYIKSWWPDQRRRLYNANIMDHIADKLEEGLNDVQEMIKTEKSYPERRLRGVLEELSCGCYRFLSLADKDQGHSSRTRLDRERLKSCMRELESMGQQAKTLRAQVKRHTLRDKLRLCQNFLQKLRFLADEPQHSIPDVFIWMMSNNKRIAYARVPSKDLLFSVVEEELGKDCAKVKTLFLKLPGKRGFGSAGWTVQAKLELYLWLGLSKQRKDFLCGLPCGFEEVKAAQGLGLPSFPPISLVYTKKQAFQLRAHMYQARSLFAADSSGLSDPFARVFFINQSQCTEVLNETLCPTWDQMLVFDNLELYGEAHELRDDPPIIVIEIYDQDTMGKADFMGRTFAKPLVKMADEAYCPPRFPPQLEYYQIYRGNATAGDLLAAFELLQIGPAGKADLPPINGPVDMDRGPIMPVPVGIRPVLSKYRIEVLFWGLRDLKRVNLAQVDRPRVDIECAGKGVQSSLIHNYKKNPNFNTLVKWFEVDLPENELLHPPLNIRVVDCRAFGRYTLVGSHAVSSLRRFIYRPPDRSAPNWNTSGRLPQGCCVLYKAGRPSRPAGEVVVNMEPEVPVKKLETMVQLDATSAAVVKVDVADEEKEKKKKKKGSSEEPEEEEPDESMLDWWSKYFASIDTMKEQLRQREASGIDLEEKEEMDNTEALKGPMKGKEKARAAKEEKKKRTQIPGPSQASEVPEKKKPKIDELKVYPKELEAEFDNFEDWLHTFNLLRGKTGDDEDGSTEEERIVGRFKGSLCVYKVPLPEDVSREAGYDPTYGMFQGIPSNDPINVLVRVYVVRATDLHPADINGKADPYIAIRLGKTDIRDKENYISKQLNPVFGKSFDIEASFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRFYSKHRATCGIAQTYSIHGYNIWRDPVKPSQILTRLCKEGKVDGPHFGPPGRVKVSNRVFTGPSEIEDENGQRKPTEEHVALLALRHWEDIPRVGCRLVPEHVETRPLLNPDKPGIEQGRLELWVDMFPMDMPAPGTPLDISPRKPKKYELRVIVWNTDEVVLEDDDFFTGEKSSDIFVRGWLKGQQEDKQDTDVHYHSLTGEGNFNWRYLFPFDYLAAEEKIVISRKESMFSWDETQYKIPARLTLQIWDADHFSADDFLGAIELDLNRFPRGAKTAKQCTMEMATGDVDVPLVSIFKQKRVKGWWPLLARNENDEFELTGKVEAELHLLTAEEAEKNPVGLARNEPDPLEKPNRPDTAFVWFLNPLKSIKYLICTRYKWLIIKIVLALLGLLMLALFLYSLPGYMVKKLLGA", "length": 1997, "header": "tr|A0A287AUV7-1|A0A287BS85_PIG Computationally mapped isoform of Otoferlin OS=Sus scrofa OX=9823 GN=OTOF PE=3 SV=2 CANONICAL=A0A287BS85-1" }, "locus": { "chromosome": "3", "start_pos": 112580095, "end_pos": 112478421, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056076.2", "url": "https://www.ensembl.org/id/ENSSSCT00000056076.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047895.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047895.2" } ] } }, { "isoform_ac": "A0A287BS85-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS85/entry#A0A287BS85-1", "sequence": { "sequence": "MALLVHLKTVSELRGRGDRIAKVTFRGQSFYSRVLENCEHVANFDETFRWPVASSIDSNEMLEIQIFNYSKVFSNKLIGTFRMVLQKVVEEKHVEVTDTLIDDNNAIIQTSLCVEVRYQAADGTVGSWDDGDFLGDESLHEEEKDSQETDGLLPGSRPSSRPPGEKSFRRAGRSVFSAMKLGKNRPHKEEPQRPDEPAVLEMEDLDRLAIRLGDGLDPDSVSLASVTALTTNVSNKRSKPDIKMEPSAGRPMDYQVSITVIEARQLVGLNMDPVVCVEVGDDKKYTSMKESTNCPYYNEYFVFDFHVSPDVMFDKIIKISVIHSKNLLRSGTLVGSFKMDVGTVYSQPEHQFHHKWAILSDPDDISAGLKGYVKCDVAVVGKGDNIKTPHKANETDEDDIEGNLLLPEGVPPERQWARFYVKIYRAEGLPRMNTSLMANVKKAFIGENKDLVDPYVQVFFAGQKGKTSVQKSSYEPLWNEQVVFTDLFPPLCKRLKVQIRDSDKVNDVAIGTHFIDLRKISNDGDKGFLPTLGPAWVNMYGSTRNYTLLDEHQDLNEGLGEGVSFRARLMLGLAVEILDTSNPELTSSTEVQLEQTTPVSESCTGKTEEFFLFGAFLEASMIDRKNGDKPITFEVTIGNYGNEVDGLSRPQRPKPRKEPGDEEEVDLIQNSSDDEPDEGGDLASVSSTPPMRPQITDRNYFHLPYLERKPCIYIKSWWPDQRRRLYNANIMDHIADKLEEGLNDVQEMIKTEKSYPERRLRGVLEELSCGCYRFLSLADKDQGHSSRTRLDRERLKSCMRELESMGQQAKTLRAQVKRHTLRDKLRLCQNFLQKLRFLADEPQHSIPDVFIWMMSNNKRIAYARVPSKDLLFSVVEEELGKDCAKVKTLFLKLPGKRGFGSAGWTVQAKLELYLWLGLSKQRKDFLCGLPCGFEEVKAAQGLGLPSFPPISLVYTKKQAFQLRAHMYQARSLFAADSSGLSDPFARVFFINQSQCTEVLNETLCPTWDQMLVFDNLELYGEAHELRDDPPIIVIEIYDQDTMGKADFMGRTFAKPLVKMADEAYCPPRFPPQLEYYQIYRGNATAGDLLAAFELLQIGPAGKADLPPINGPVDMDRGPIMPVPVGIRPVLSKYRIEVLFWGLRDLKRVNLAQVDRPRVDIECAGKGVQSSLIHNYKKNPNFNTLVKWFEVDLPENELLHPPLNIRVVDCRAFGRYTLVGSHAVSSLRRFIYRPPDRSAPNWNTSGRLPQGCCVLYKAGRPSRPAGEVVVNMEPEVPVKKLETMVQLDATSAAVVKVDVADEEKEKKKKKKGSSEEPEEEEPDESMLDWWSKYFASIDTMKEQLRQREASGIDLEEKEEMDNTEALKGPMKGKEKARAAKEEKKKRTQIPGPSQASEVPEKKKPKIDELKVYPKELEAEFDNFEDWLHTFNLLRGKTGDDEDGSTEEERIVGRFKGSLCVYKVPLPEDVSREAGYDPTYGMFQGIPSNDPINVLVRVYVVRATDLHPADINGKADPYIAIRLGKTDIRDKENYISKQLNPVFGKSFDIEASFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRFYSKHRATCGIAQTYSIHGYNIWRDPVKPSQILTRLCKEGKVDGPHFGPPGRVKVSNRVFTGPSEIEDENGQRKPTEEHVALLALRHWEDIPRVGCRLVPEHVETRPLLNPDKPGIEQGRLELWVDMFPMDMPAPGTPLDISPRKPKKYELRVIVWNTDEVVLEDDDFFTGEKSSDIFVRGWLKGQQEDKQDTDVHYHSLTGEGNFNWRYLFPFDYLAAEEKIVISRKESMFSWDETQYKIPARLTLQIWDADHFSADDFLGAIELDLNRFPRGAKTAKQCTMEMATGDVDVPLVSIFKQKRVKGWWPLLARNENDEFELTGKVEAELHLLTAEEAEKNPVGLARNEPDPLEKPNRPDTSFIWFLNPLKSAHYFLWHTYRWLLLKLLLLALLLLLLALFLYSVPGYLVKKILGA", "length": 1997, "header": "tr|A0A287BS85-1|A0A287BS85_PIG Isoform 1 of Otoferlin OS=Sus scrofa OX=9823 GN=OTOF PE=3 SV=2 CANONICAL=A0A287BS85-1" }, "locus": { "chromosome": "3", "start_pos": 112578552, "end_pos": 112478421, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055072.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055072.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059037.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059037.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson 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fission", "id": "GO:0016559", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016559", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SK70", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SK70" } ], "pmid": "" }, { "name": "regulation of peroxisome size", "id": "GO:0044375", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044375", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SK70", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SK70" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SK70", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SK70" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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"sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BTH4-1", "uniprot_ac": "A0A287BTH4", "uniprot_id": "A0A287BTH4_PIG", "mass": { "chemical_mass": 68247.0, "monoisotopic_mass": 68247.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Complement component 4 binding protein alpha", "type": "synonym", "evidence": [ { "id": "A0A287BTH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BTH4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BTH4", "url": "https://www.uniprot.org/uniprotkb/A0A287BTH4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287BTH4", "locus": {} } ], "crossref": [ { "id": "A0A287BTH4", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BTH4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015662", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015662", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00033", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00033", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520761", "url": "https://www.ncbi.nlm.nih.gov/gene/100520761", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000436", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000436", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035976", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035976", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040514", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040514", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19325", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19325", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19325:SF551", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19325:SF551", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00084", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00084", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18453", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18453", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A3T0", "url": "https://www.uniprot.org/uniprotkb/A0A287A3T0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A3T0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3T0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A7D4", "url": "https://www.uniprot.org/uniprotkb/A0A287A7D4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A7D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7D4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZ23", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZ23-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZ23-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BTH4", "url": "https://www.uniprot.org/uniprotkb/A0A287BTH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BTH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTH4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S0J2", "url": "https://www.uniprot.org/uniprotkb/F1S0J2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S0J2-1", "url": "https://www.uniprot.org/uniprotkb/F1S0J2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "KVSVKHQVMDFPRALITIFHGKGTMASWPFSRRWRVSDPILFQVTLAAALLATVLGKCGPPPYLQFASPISELNETEFETGTTLKYNCRPGYRKITAKNHVLTCESRGTWNYIEFCVKKQCGNPGELLNGQVKVKTDYSLGSQIEFSCSEGYVLVGPTTSYCEIQEKGVGWSEYLPRCMIVKCEPPPAISNGKHNGGDEDFYTYGSSVTYSCDSDFSMLGKASISCSVENETIGVWSPSPPICKKINCLQPVVKNGKITSGFGPIYAYKESILFGCDKGFRLKGSNLIHCEADSNWSPPPPICELHGCAGLPNIPHATWRRYSYSLPTEEVYGVDTVMSYYCLSGYRPKTSGSLTVTCQEDFKWSSYIECVEVCCPVPDVDHISITYRKKNQSANHCTYYSGDKISYTCNNNEKVRYVSSCSEQGTWRPRMPVCDRGCDNPPVVAHGHHTQIITLFGIKKDEVVYKCDEGYTLVGEDRLFCHYSRWSPAAPRCKAQCLKPVIDHGKLSVDQDKYTESEIITVQCDSGYGLVGPQNITCIEDRTWHPQVPKCEWEYPEDCEQVHEGKKLMQCLPNPEEIKLALELYKLSLEIKLLKRQIDEKADLESSV", "length": 608, "header": "tr|A0A287BTH4-1|A0A287BTH4_PIG Isoform 1 of Complement component 4 binding protein alpha OS=Sus scrofa OX=9823 GN= PE=1 SV=3 CANONICAL=A0A287BTH4-1" }, "isoforms": [ { "isoform_ac": "A0A287A3T0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTH4/entry#A0A287A3T0-1", "sequence": { "sequence": "FHSRLKVSVKHQVMDFPRALITIFHGKGTMASWPFSRRWRVSDPILFQVTLAAALLATVLGKCGPPPYLQFASPISELNETEFETGTTLKYNCRPGYRKITAKNHVLTCESRGTWNYIEFCVKKQCGNPGELLNGQVKVKTDYSLGSQIEFSCSEGYVLVGPTTSYCEIQEKGVGWSEYLPRCMIVKCEPPPAISNGKHNGGDEDFYTYGSSVTYSCDSDFSMLGKASISCSVENETIGVWSPSPPICKKINCLQPVVKNGKITSGFGPIYAYKESILFGCDKGFRLKGSNLIHCEADSNWSPPPPICELHGCAGLPNIPHATWRRYSYSLPTEEVYGVDTVMSYYCLSGYRPKTSGSLTVTCQEDFKWSSYIECVEVCCPVPDVDHISITYRKKNQSANHCTYYSGDKISYTCNNNEKVRYVSSCSEQGTWRPRMPVCDRGCDNPPVVAHGHHTQIITLFGIKKDEVVYKCDEGYTLVGEDRLFCHYSRWSPAAPRCKAQCLKPVIDHGKLSVDQDKYTESEIITKTEPGTHRCPSVNGSTPKTVSKCMKAKNSCTV", "length": 558, "header": "tr|A0A287A3T0-1|A0A287BTH4_PIG Computationally mapped isoform of Complement component 4 binding protein alpha OS=Sus scrofa OX=9823 GN= PE=1 SV=3 CANONICAL=A0A287BTH4-1" }, "locus": { "chromosome": "9", "start_pos": 67773963, "end_pos": 67740591, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038832.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038832.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038624.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038624.3" } ] } }, { "isoform_ac": "A0A287A7D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTH4/entry#A0A287A7D4-1", "sequence": { "sequence": "MDFPRALITIFHGKGTMASWPFSRRWRVSDPILFQVTLAAALLATVLGKCGPPPYLQFASPISELNETEFETGTTLKYNCRPGYRKITAKNHVLTCESRGTWNYIEFCVKKQCGNPGELLNGQVKVKTDYSLGSQIEFSCSEGYVLVGPTTSYCEIQEKGVGWSEYLPRCMIVKCEPPPAISNGKHNGGDEDFYTYGSSVTYSCDSDFSMLGKASISCSVENETIGVWSPSPPICKKINCLQPVVKNGKITSGFGPIYAYKESILFGCDKGFRLKGSNLIHCEADSNWSPPPPICELHGCAGLPNIPHATWRRYSYSLPTEEVYGVDTVMSYYCLSGYRPKTSGSLTVTCQEDFKWSSYIECVEVCCPVPDVDHISITYRKKNQSANHCTYYSGDKISYTCNNNEKVRYVSSCSEQGTWRPRMPVCDRAQCLKPVIDHGKLSVDQDKYTESEIITVQCDSGYGLVGPQNITCIEDRTWHPQVPKCEWEYPEDCEQVHEGKKLMQCLPNPEEIKLALELYKLSLEIKLLKRQIDEKADLESSV", "length": 542, "header": "tr|A0A287A7D4-1|A0A287BTH4_PIG Computationally mapped isoform of Complement component 4 binding protein alpha OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=A0A287BTH4-1" }, "locus": { "chromosome": "9", "start_pos": 67774033, "end_pos": 67740728, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064716.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064716.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039789.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039789.1" } ] } }, { "isoform_ac": "A0A287AZ23-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTH4/entry#A0A287AZ23-1", "sequence": { "sequence": "MDFPRALITIFHGKGTMASWPFSRRWRVSDPILFQVTLAAALLATVLGKCGPPPYLQFASPISELNETEFETGTTLKYNCRPGYRKITAKNHVLTCESRGTWNYIEFCVKKQCGNPGELLNGQVKVKTDYSLGSQIEFSCSEGYVLVGPTTSYCEIQEKGVGWSEYLPRCMIVKCEPPPAISNGKHNGGDEDFYTYGSSVTYSCDSDFSMLGKASISCSVENETIGVWSPSPPICKKINCLQPVVKNGKITSGFGPIYAYKESILFGCDKGFRLKGSNLIHCEADSNWSPPPPICELHGCAGLPNIPHATWRRYSYSLPTEEVYGVDTVMSYYCLSGYRPKTSGSLTVTCQEDFKWSSYIECVEVCCPVPDVDHISITYRKKNQSANHCTYYSGDKISYTCNNNEKVRYVSSCSEQGTWRPRMPVCDRGCDNPPVVAHGHHTQIITLFGIKKDEVVYKCDEGYTLVGEDRLFCHYSRWSPAAPRCKAQCLKPVIDHGKLSVDQDKYTESEIITKTEPGTHRCPSVNGSTPKTVSKCMKAKNSCSVSQTRRR", "length": 551, "header": "tr|A0A287AZ23-1|A0A287BTH4_PIG Computationally mapped isoform of Complement component 4 binding protein alpha OS=Sus scrofa OX=9823 GN= PE=1 SV=3 CANONICAL=A0A287BTH4-1" }, "locus": { "chromosome": "9", "start_pos": 67773941, "end_pos": 67740728, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044614.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044614.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049136.3", "url": "https://www.ensembl.org/id/ENSSSCP00000049136.3" } ] } }, { "isoform_ac": "A0A287BTH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTH4/entry#A0A287BTH4-1", "sequence": { "sequence": "KVSVKHQVMDFPRALITIFHGKGTMASWPFSRRWRVSDPILFQVTLAAALLATVLGKCGPPPYLQFASPISELNETEFETGTTLKYNCRPGYRKITAKNHVLTCESRGTWNYIEFCVKKQCGNPGELLNGQVKVKTDYSLGSQIEFSCSEGYVLVGPTTSYCEIQEKGVGWSEYLPRCMIVKCEPPPAISNGKHNGGDEDFYTYGSSVTYSCDSDFSMLGKASISCSVENETIGVWSPSPPICKKINCLQPVVKNGKITSGFGPIYAYKESILFGCDKGFRLKGSNLIHCEADSNWSPPPPICELHGCAGLPNIPHATWRRYSYSLPTEEVYGVDTVMSYYCLSGYRPKTSGSLTVTCQEDFKWSSYIECVEVCCPVPDVDHISITYRKKNQSANHCTYYSGDKISYTCNNNEKVRYVSSCSEQGTWRPRMPVCDRGCDNPPVVAHGHHTQIITLFGIKKDEVVYKCDEGYTLVGEDRLFCHYSRWSPAAPRCKAQCLKPVIDHGKLSVDQDKYTESEIITVQCDSGYGLVGPQNITCIEDRTWHPQVPKCEWEYPEDCEQVHEGKKLMQCLPNPEEIKLALELYKLSLEIKLLKRQIDEKADLESSV", "length": 608, "header": "tr|A0A287BTH4-1|A0A287BTH4_PIG Isoform 1 of Complement component 4 binding protein alpha OS=Sus scrofa OX=9823 GN= PE=1 SV=3 CANONICAL=A0A287BTH4-1" }, "locus": { "chromosome": "9", "start_pos": 67774033, "end_pos": 67740704, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039273.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039273.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059526.3", "url": "https://www.ensembl.org/id/ENSSSCP00000059526.3" } ] } }, { "isoform_ac": "F1S0J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTH4/entry#F1S0J2-1", "sequence": { "sequence": 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"https://www.ensembl.org/id/ENSSSCT00000017060.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016605.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016605.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 158, "start_aa": "Thr", "end_pos": 158, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr158", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": 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"glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BT76-1", "uniprot_ac": "A0A287BT76", "uniprot_id": "A0A287BT76_PIG", "mass": { "chemical_mass": 119369.0, "monoisotopic_mass": 119369.0 }, "refseq": {}, "gene_names": [ { "name": "EFL1", "type": "recommended", "evidence": [ { "id": "A0A287BT76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76" } ] } ], "protein_names": [ { "name": "Elongation factor-like GTPase 1", "type": "recommended", "evidence": [ { "id": "A0A287BT76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76/entry#names_and_taxonomy" } ] }, { "name": "Elongation factor Tu GTP-binding domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "A0A287BT76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76/entry#names_and_taxonomy" } ] }, { "name": "Elongation factor-like 1", "type": "synonym", "evidence": [ { "id": "A0A287BT76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76/entry#names_and_taxonomy" } ] }, { "name": "Protein FAM42A", "type": "synonym", "evidence": [ { "id": "A0A287BT76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "GTPase involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with SBDS, triggers the GTP-dependent release of EIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating EIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export.", "evidence": [ { "database": "UniProtKB", "id": "A0A5K1U2U1", "url": "https://www.uniprot.org/uniprotkb/A0A5K1U2U1#function" }, { "database": "UniProtKB", "id": "ARBA00054932", "url": "https://www.uniprot.org/uniprotkb/ARBA00054932#function" }, { "database": "UniProtKB", "id": "F1RID1", "url": "https://www.uniprot.org/uniprotkb/F1RID1#function" }, { "database": "UniProtKB", "id": "A0A287BT76", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BT76", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EFL1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76", "locus": { "chromosome": "7", "start_pos": 50839725, "end_pos": 50977024, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001792", "url": "https://www.ensembl.org/id/ENSSSCG00000001792" } ] } } ], "crossref": [ { "id": "A0A287BT76", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BT76", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001792", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001792", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01681", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01681", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01885", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01885", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04096", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04096", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16261", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16261", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16268", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16268", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155652", "url": "https://www.ncbi.nlm.nih.gov/gene/100155652", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000640", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000640", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014721", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014721", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020568", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020568", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035647", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035647", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041095", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041095", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155652", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155652", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FARCDIQ", "url": "https://omabrowser.org/oma/group/FARCDIQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RID1", "url": "https://www.orthodb.org/?gene=F1RID1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR42908", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42908", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42908:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42908:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00009", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00009", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14492", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14492", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25118", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25118", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BT76", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BT76-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUA0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUA0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5K1U2U1", "url": "https://www.uniprot.org/uniprotkb/A0A5K1U2U1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5K1U2U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5K1U2U1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RID1", "url": "https://www.uniprot.org/uniprotkb/F1RID1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RID1-1", "url": "https://www.uniprot.org/uniprotkb/F1RID1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLNSLDKMIQLQKNTANIRNICVLAHVDHDDEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERVTESQVNPHSEQGEQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSAIDGWGFGIEHFAKIYSQKTGIRKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKPLFVQLILGNIWSLYDAVLKKDKEKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISQAVLAMVCQKLPSPLDITAERVEKLMCAGSQTFDSLPPETQALKAAFMKCGSEDTAPVIIFVSKMFAVDAKALPQNKPRPLTPEEIAERRERARRRHAEKLAAAQGQAPVEPTQDGSALEASPKEEEPKGDEQQVLQEGNDQESFIAFARVFSGVARRGKKIFVLGPKYSPLEFLQRVPLGFSAPLDGLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGLQDFVLKSATLCTLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIQISVSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSDGLVTITTPNKLATLCVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGKNTQVIHQKTQEKIGEFKGRLEQHLTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPDGKASQEANRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQTASDKQNQKQSDLVDAGQGEGETSSAGDENQEVHNGCSEPFEKRPSQKGESSLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1069, "header": "tr|A0A287BT76-1|A0A287BT76_PIG Isoform 1 of Elongation factor-like GTPase 1 OS=Sus scrofa OX=9823 GN=EFL1 PE=1 SV=1 CANONICAL=A0A287BT76-1" }, "isoforms": [ { "isoform_ac": "A0A287BT76-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76/entry#A0A287BT76-1", "sequence": { "sequence": "MVLNSLDKMIQLQKNTANIRNICVLAHVDHDDEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERVTESQVNPHSEQGEQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSAIDGWGFGIEHFAKIYSQKTGIRKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKPLFVQLILGNIWSLYDAVLKKDKEKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISQAVLAMVCQKLPSPLDITAERVEKLMCAGSQTFDSLPPETQALKAAFMKCGSEDTAPVIIFVSKMFAVDAKALPQNKPRPLTPEEIAERRERARRRHAEKLAAAQGQAPVEPTQDGSALEASPKEEEPKGDEQQVLQEGNDQESFIAFARVFSGVARRGKKIFVLGPKYSPLEFLQRVPLGFSAPLDGLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGLQDFVLKSATLCTLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIQISVSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSDGLVTITTPNKLATLCVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGKNTQVIHQKTQEKIGEFKGRLEQHLTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPDGKASQEANRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQTASDKQNQKQSDLVDAGQGEGETSSAGDENQEVHNGCSEPFEKRPSQKGESSLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1069, "header": "tr|A0A287BT76-1|A0A287BT76_PIG Isoform 1 of Elongation factor-like GTPase 1 OS=Sus scrofa OX=9823 GN=EFL1 PE=1 SV=1 CANONICAL=A0A287BT76-1" }, "locus": { "chromosome": "7", "start_pos": 50976116, "end_pos": 50839866, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048968.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048968.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059386.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059386.1" } ] } }, { "isoform_ac": "A0A5G2QUA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76/entry#A0A5G2QUA0-1", "sequence": { "sequence": "MVLNSLDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQIRGITMKSSAISLHYAKDDEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERVTESQVNPHSEQGEQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSAIDGWGFGIEHFAKIYSQKTGIRKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKPLFVQLILGNIWSLYDAVLKKDKEKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISQAVLAMVCQKLPSPLDITAERVEKLMCAGSQTFDSLPPETQALKADLSLQKRSLRGVSVPDEGTRRSWQRRRGRHPWSPPRMGVPLRRVQRKKSRKVPLGFSAPLDGLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGLQDFVLKSATLCTLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIQISVSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSDGLVTITTPNKLATLCVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGKNTQVIHQKTQEKIGEFKGRLEQHLTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPDGKASQEANRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQTASDKQNQKQSDLVDAGQGEGETSSAGDENQEVHNGCSEPFEKRPSQKGESSLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1039, "header": "tr|A0A5G2QUA0-1|A0A287BT76_PIG Computationally mapped isoform of Elongation factor-like GTPase 1 OS=Sus scrofa OX=9823 GN=EFL1 PE=1 SV=1 CANONICAL=A0A287BT76-1" }, "locus": { "chromosome": "7", "start_pos": 50976116, "end_pos": 50839866, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088779.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088779.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065571.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065571.1" } ] } }, { "isoform_ac": "A0A5K1U2U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76/entry#A0A5K1U2U1-1", "sequence": { "sequence": "MVLNSLDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLSHSRLPEKEFLYTCTTENVFSHFLSDDEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERVTESQVNPHSEQGEQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSAIDGWGFGIEHFAKIYSQKTGIRKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKPLFVQLILGNIWSLYDAVLKKDKEKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISQAVLAMVCQKLPSPLDITAERVEKLMCAGSQTFDSLPPETQALKAAFMKCGSEDTAPVIIFVSKMFAVDAKALPQNKPRPLTPEEIAERRERARRRHAEKLAAAQGQAPVEPTQDGSALEASPKEEEPKGDEQQVLQEGNDQESFIAFARVFSGVARRGKKIFVLGPKYSPLEFLQRVPLGFSAPLDGLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGLQDFVLKSATLCTLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIQISVSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSDGLVTITTPNKLATLCVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGKNTQVIHQKTQEKIGEFKGRLEQHLTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPDGKASQEANRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQTASDKQNQKQSDLVDAGQGEGETSSAGDENQEVHNGCSEPFEKRPSQKGESSLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1118, "header": "tr|A0A5K1U2U1-1|A0A287BT76_PIG Computationally mapped isoform of Elongation factor-like GTPase 1 OS=Sus scrofa OX=9823 GN=EFL1 PE=1 SV=1 CANONICAL=A0A287BT76-1" }, "locus": { "chromosome": "7", "start_pos": 50976116, "end_pos": 50839866, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029552.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029552.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028114.3", "url": "https://www.ensembl.org/id/ENSSSCP00000028114.3" } ] } }, { "isoform_ac": "F1RID1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76/entry#F1RID1-1", "sequence": { "sequence": "MVLNSLDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQIRGITMKSSAISLHYAKDDEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERVTESQVNPHSEQGEQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSAIDGWGFGIEHFAKIYSQKTGIRKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKPLFVQLILGNIWSLYDAVLKKDKEKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISQAVLAMVCQKLPSPLDITAERVEKLMCAGSQTFDSLPPETQALKAAFMKCGSEDTAPVIIFVSKMFAVDAKALPQNKPRPLTPEEIAERRERARRRHAEKLAAAQGQAPVEPTQDGSALEASPKEEEPKGDEQQVLQEGNDQESFIAFARVFSGVARRGKKIFVLGPKYSPLEFLQRVPLGFSAPLDGLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGLQDFVLKSATLCTLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIQISVSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSDGLVTITTPNKLATLCVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGKNTQVIHQKTQEKIGEFKGRLEQHLTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPDGKASQEANRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQTASDKQNQKQSDLVDAGQGEGETSSAGDENQEVHNGCSEPFEKRPSQKGESSLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1120, "header": "tr|F1RID1-1|A0A287BT76_PIG Computationally mapped isoform of Elongation factor-like GTPase 1 OS=Sus scrofa OX=9823 GN=EFL1 PE=1 SV=3 CANONICAL=A0A287BT76-1" }, "locus": { "chromosome": "7", "start_pos": 50976116, "end_pos": 50839866, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002008.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002008.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001959.3", "url": "https://www.ensembl.org/id/ENSSSCP00000001959.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUA0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUA0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155652", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155652", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7FRL8-1", "protein_name": "Elongation factor-like GTPase 1", "gene_name": "Efl1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVLNGVDKMIQLQKHTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQVRGITMKSSAISLHYAEGNEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKLDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERETDSQVKTQSEQGDQVYDWSTGLEDADDSQLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKIGIKKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKPLFVQLILENIWSLYDAVLKKDKEKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISHAVLAMVCQKLPSPLDMTSERVEKLMCTGSQTFESLPLETQALKAAFMKCGSEDTAPVIIFVSKMFAVDAKTLPQNKPRPLTQEEIAQRRERARQRHAERLAGTQGQAPQGPTQDGGTLETGPQGDEPRGDEPDVASISPQPVAQEESSQEAFIAFARVFSGIARRGQKIFVLGPKYSPVEFLQRVPLGFSAPLEDLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGLQDFVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLRERFAKIHISVSEPIIPFRETITKPPKVDMVNEEIGRQQKVAVIHQTKEEQSKIPEGIHVDSDGLITITTPNKLATLSVRAIPLPEEVTQILEENSDLIRSMELLTSSLNEGRNTQGIHQKTQEKIWDFKGKLEQHLIGRKWRNTVDQIWSFGPRKCGPNILVSRSEDFQNSVWSGPAGKESKEASRFRDFGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWELNKCAEQGASDKQNQKQCDLAEEGQEEGKTCHSGDENQEQQDGCSEPFEETSPKGESPVTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEVRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1127 }, "evidence": [ { "id": "A0A287BT76", "url": "https://omabrowser.org/oma/group/A0A287BT76/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9SKN9-1", "protein_name": "Elongation factor-like GTPase 1", "gene_name": "EFL1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVLNSLDKMIQLQKNTANIRNICVLAHVDHGDKEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAEREAESQVNPNSEQGEQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSAIDGWGFGIEHFAKIYSQKTGIRKEVLLKTLWGDYYINTKAKKIMKVDQAKGKKPLFVQLILENIWSLYDAVLKKDKEKTDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISQAVLAMVCQKLPSPLDITAERVEKLMCAGSQTFDSLPPETQALKAAFMKCGSEDTAPVIIFVSKMFAVDAKALPQNKPRPLTQEEIAERRERARRRHAEKLAAAQGQAPVEPTQDAGALEMSPQGEEPKGDEQGVESETPKPVSPEGSEQESFIAFARVFSGVARKGKRIFVLGPKYSPLEFLQQVPLGFSAPLEDLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGLQDFVLKSATLCTSPSCPPFIPLNFEATPIVRVAIEPKHPSEMPQLVKGMKLLNQADPCVQVFIQETGEHVLVTAGEVHLQRCLDDLKERFAKIEISVSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSNGLITMMTPNKLATLSVRALPLPEEVTQILEESSDLIRSMEQLTSSLNEGKNNPQMIHQKTQEKIWEFKGKLEHHLTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFHNSVWTGLDGKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQTASDLVKERQGEGDTRSGGDEQQELQDYGSEPFEKRASQRGESPLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1070 }, "evidence": [ { "id": "A0A287BT76", "url": "https://omabrowser.org/oma/group/A0A287BT76/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZXJ5-1", "protein_name": "Elongation factor-like GTPase 1", "gene_name": "Efl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVLSGLDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQVRGITMKSSAISLHYAEGSEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILGQINALTGTLFTSKVLEERAERETESQAKSHSEQGDQVYDWSTGLEDVDDSQLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKIGIKKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKPLFVQLILENIWSLYDAVLKKDKEKVDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISHAVLAMVCQKLPSPLDMTSERVEKLMCTGSQTFESLPLETQALKAAFMKCGSEDTAPVIIFVSKMFAVDVKALPQNKPRPLTQEEMAQRRERARQRHAEKLAAAQGQAPQGPTQDGGALETSPQEDEPRGEEPDMTSVSRQPAPQEESSQEAFIAFARVFSGVARRGKKIFVLGPKYSPVDFLQRVPQGFSAPLEDLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGLQDSVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLRERFAKIHISVSEPIIPFRETITKPPKVDMVNEEIGRQQKVAVIHQTKEEQSKIPEGILVDSDGLITIPTPNKLATLSVRAIPLPEEVTRILEENSDLIRSMELLTSSLNEGRNTQAIHQKTQEKIWEFKGKLEKHLTGRKWRNTVDQIWSFGPRKCGPNILVSRSEDFQSSVWSGPAGRESKEASRFRDFGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWELNKCAEPGASDKQSQGQCDLTGEGQEKSKTCPVGDENQEQQDGYSEPFEETSQKGDSPVIDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1127 }, "evidence": [ { "id": "A0A287BT76", "url": "https://omabrowser.org/oma/group/A0A287BT76/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NZK8-1", "protein_name": "Elongation factor-like GTPase 1", "gene_name": "EFL1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLTSVGKMMGLQQKAAGIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYLDSREDEQVRGITMKSSAISLHFEKGGQEYLINLIDSPGHVDFSSEVSTAVRLCDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKLTPQEAYMHLKNILEQINAVTGSLFTSKVLEERAEKEAESESSSDTAAGDQIYDWSAGLEDTDDSHLYFSPDHGNVVFASAIDGWGFGIEHFAKLYSQKIGIKPAVLLKTLWGDYYLNTKAKKIMKGDQSKGKKPLFVQLVLDNIWSLYEAVMKRDKEKIEKIVTSLGLKIGPRESRHADPKVHLNAICSQWLPISDAVLSMVCSKLPSPLDITAERVEKLMCVGAKTFDSLPPETQELKSAFLRCSSEETAPVIVFVSKMFAVDAKALPHNKPRPLTQEEIAQRRELAKQRHAGKMAANQGKEVSEKPPSENSSEGTGSTGDKKGEEQQLTDQMDVVTSKAAKQEADNKESFIAFARVFSGVVRRGQKIFVLGPKYDPAESLHKLSPQCSATDDLPSVPHMSCCTLENLYLLMGRELEELEEVPAGNVLGIGGLQDFVLKSATLSTSPACPPFTPLNFEATPIVRVAVEPKHPSDMPQLVRGMKLLNQADPCVQVLIQETGEHVLVTAGEVHLQRCLDDLKERFAKIEISVSAPIIPFRETITRPPKVDMVNEEIGKQQKVAVIHQTKEDQNKIPEGIQVDSDGLVTISTPNKQATLSVRALPLPEEVTRLLEENSDLIRTMEQLSTSLNEDKNAHEINQKTMDKIKEFKQKLEQNLQGRKWRNAVDHIWSFGPRKCGPNILLHKFEGYKNSVWQCLENTEKEVSKYGDFDNSIVSGFQLATLSGPMCEEPLMGVCFTVEKWEMNKVGETLLTKSRDSGECGAVEHQESEDTVSPTSNCTVDTCSENEHEQSSQSVPKSLEKNSKNKGEVLLTDCYGPFSGQLIATMKEACRYALQAKPQRLMAAMYTCEIMATAEVLGRVYAVLSKREGRVLQEEMKEGTDVFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIISSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSRNK", "length": 1139 }, "evidence": [ { "id": "A0A287BT76", "url": "https://omabrowser.org/oma/group/A0A287BT76/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F4J2T9-1", "protein_name": "Elongation factor-like 1", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDESEGRKVRNICILAHVDHGKTTLADHLIASSGGGVLHPRLAGKLRFMDYLDEEQRRAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLIFELRLSPMEAYTRLIRIVHEVNGIVSAYKSEKYLSDVDSILASPSGELSAESLELLEDDEEVTFQPQKGNVVFVCALDGWGFGIAEFANFYASKLGASATALQKSLWGPRYYIPKTKMIVGKKNLSAGSKAKPMFVQFVLEPLWQVYEAALDPGGDKAVLEKVIKSFNLSIPPRELQNKDPKNVLQSVMSRWLPLSDAVLSMAVKHLPDPIAAQAYRIPRLVPERKIIGGDDVDSSVLAEAELVRKSIEACDSSSDSPCVVFVSKMFAIPMKMIPQDGNHRERMNGLNDDDSKSESDECFLAFARIFSGVLRAGQRVFVITALYDPLKGESSHKYIQEAELHSLYLMMGQGLTPVTEVKAGNVVAIRGLGPYISKSATLSSTRNCWPLASMEFQVSPTLRVAIEPSDPADMSALMKGLRLLNRADPFVEITVSARGEHVLAAAGEVHLERCVKDLKERFAKVNLEVSPPLVSYRETIEGDGSNLLESLRSLSLNSSDYIEKRTPNGRCIIRVHVMKLPHALTKLLDENTELLGDIIGGKGSHSVKILESQKPSLGENVDPIEELKKQLVEAGVSSSSETEKDREKCKTEWSKLLKRIWALGPREKGPNILFAPDGKRIAEDGSMLVRGSPHVSQRLGFTEDSTETPAEVSETALYSEALTLESSIVSGFQLATASGPLCDEPMWGLAFTIESHLAPAEDVETDKPENFGIFTGQVMTAVKDACRAAVLQTNPRIVEAMYFCELNTAPEYLGPMYAVLSRRRARILKEEMQEGSSLFTVHAYVPVSESFGFADELRKGTSGGASALMVLSHWEMLEEDPFFVPKTEEEIEEFGDGASVLPNTARKLINAVRRRKGLHVEEKVVQYATKQRTLARKV", "length": 1015 }, "evidence": [ { "id": "A0A287BT76", "url": "https://omabrowser.org/oma/group/A0A287BT76/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P53893-1", "protein_name": "Ribosome assembly protein 1", "gene_name": "RIA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MPRVESETYKRLQNDPSCIRNICIVAHVDHGKTSLSDSLLASNGIISQRLAGKIRFLDARPDEQLRGITMESSAISLYFRVLRKQEGSDEPLVSEHLVNLIDSPGHIDFSSEVSAASRLCDGAVVLVDVVEGVCSQTVTVLRQCWTEKLKPILVLNKIDRLITELQLTPQEAYIHLSKVIEQVNSVIGSFFANERQLDDLFWREQLEKNENAEYIEKDDSGIYFNPTDNNVIFASAIDGWGFNIGQLAKFYEQKLGAKRENLQKVLWGDFYMDPKTKKIINNKGLKGRSLKPLFTSLILENIWKIYQNIITSRDSEMVEKIAKTLNIKLLARDLRSKDDKQLLRTIMGQWLPVSTAVLLTVIEKLPSPLESQTDRLNTILVSESDTAAMDPRLLKAMKTCDKEGPVSAYVSKMLSIPREELPVESKRIASSDELMERSRKAREEALNAAKHAGMVENMAMMDLNDNSKNTSDLYKRAKDTVMTPEVGEQTKPKPSRNNDVFCVVSEPSSALDLEFEYEGEDDSDSQDNFGLDFVPTDIDPNDPLSSMFEYEEEDPLLESIKQISEDVNDEVDDIFDEKEECLVAFARIYSGTLRVGQEISVLGPKYDPKCPEEHIETAIITHLYLFMGKELVPLDVCPSGNIVGIRGLAGKVLKSGTLIEKGVQGVNLAGVNFHFTPIVRVAVEPANPVEMSKLVRGLKLLDQADPCVHTYVENTGEHILCTAGELHLERCLKDLTERFAGIEITHSEPAIPYRETFLSASDMNPPQNSQLGRGVHELLLSQYKITFRTFPLSGKVTDFLSQHQNSIKNILKTSTSSMDPVIESTGSSFLDKKSLLVAFEEVINQEEKSRELLSGFKVKLAGFGPSRVGCNILLSQDNLLGSLFEGTPAAFEYSDSIKNGFQLAVSEGPLANEPVQGMCVLVESVHKMSQDEIESIEDPRYQQHIVDLSGRLITSTRDAIHEAFLDWSPRIMWAIYSCDIQTSVDVLGKVYAVILQRHGKIISEEMKEGTPFFQIEAHVPVVEAFGLSEDIRKRTSGAAQPQLVFSGFECIDLDPFWVPTTEEELEELGDTADRENIARKHMNAIRRRKGLFIEEKVVENAEKQRTLKKN", "length": 1110 }, "evidence": [ { "id": "A0A287BT76", "url": "https://omabrowser.org/oma/group/A0A287BT76/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54WF2-1", "protein_name": "Ribosome assembly protein 1", "gene_name": "eftud1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPSISPNLLASLQDHTKNIRNICVLAHVDHGKTTLSDCLISSNGIISPEMAGKLRYLDFLEDEQEREITMKASAISLLFQQPSSSSSSNDKESFLINLIDSPGHVDFSSEVSTAVRITDGALVLVDAVEGVCIQTHAVLKQAYQEKVKPCLVLNKIDRLILELHMTPLEAYQHLSKIIEQVNVITGTLTSEEIILKESSEDYIESSDDSNLNFNENIGTEYYFSPQKGNVAFTTAFDGWGFTIKQFIDLCYKKTGIKKEILEKCLWGEYYYHPKEKKIYKSPKGNLMPMFVTFILNSVWEVVKTIVGTPEWIDRDRLDKMISVLNITVGARDLASKDQKIVLKSVLHAWLPLSEAVLSMVCDKLPDPIEGQARRMEKIFKPSKSLSTSSSSSSSSSNQSNVELIEKQKQLLYDTITCNSSDDCEIVAYVAKVFAHNKRGGVQTSTIHRPVPPRRVQPSAVPSQNRQQQLHQDEKDILKIDNMFISSAPSTTNDSTTTTKTTTTSPSSPITSTAKPLDLSTIPTGPIKANNNDEEFIAVVRVFSGVLKKGKTIYVMGPRYDPMNPTHDVYKVEITHLYLLMGSSLEPIDKVPAGNVCGVGGGVGNLVLKSATISSSLMCPPISNMMFVSSPIVKVALEPENISDLPKLLHGLKLLNQADPLVEVYVQETGEHVIVASGELHLERCIRDLKESFAKINVHVSSPIVPFRETIITPTITTPTTSSTITSSSSTTAAATATTTNNSGQQSPPLKEIITVKTANKKVSVKIRAIPLPKNITNLIEQRSQQLRDLFLGGKNTNKELSDNKITKREAEQAEREDFQKELEEELEKSGGDWKNEIKNIWSFGPRHIGPNLLLNHIPGYNLSPYWKHSLQRGIQKKLKKLQKQQQQEKEEIKEEEEEKEEEEKEDEEDEDEKEIEEEEIQEEENSNSEVGSIKLLDGDDKFKRISELDNSIVSGFQLATIAGPLCDEPMMGVCLIVEDIDIIREEGDQQNSDSYGPLSGQMISTVKEGCRMAFQIKPQRLMEALYLCEIQVTSTALGKMYSVLSSRRAQIQKEGVKEGTQIFCIQARLPVVESFGFSQQIMIKTSGAASTQLFFDNYWETIEQDPYYEPTTEEELEDNGVNIASLGNNIARQYMNMIRKRKGLFVEEKLVEHADKQRTLKKNK", "length": 1164 }, "evidence": [ { "id": "A0A287BT76", "url": "https://omabrowser.org/oma/group/A0A287BT76/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q7Z2Z2-1", "protein_name": "Elongation factor-like GTPase 1", "gene_name": "EFL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVLNSLDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQIRGITMKSSAISLHYATGNEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERETESQVNPNSEQGEQVYDWSTGLEDTDDSHLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKIGIKKEVLMKTLWGDYYINMKAKKIMKGDQAKGKKPLFVQLILENIWSLYDAVLKKDKDKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISHAVLAMVCQKLPSPLDITAERVERLMCTGSQTFDSFPPETQALKAAFMKCGSEDTAPVIIFVSKMFAVDAKALPQNKPRPLTQEEIAQRRERARQRHAEKLAAAQGQAPLEPTQDGSAIETCPKGEEPRGDEQQVESMTPKPVLQEENNQESFIAFARVFSGVARRGKKIFVLGPKYSPLEFLRRVPLGFSAPPDGLPQVPHMAYCALENLYLLMGRELEYLEEVPPGNVLGIGGLQDFVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIHISVSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQMKEDQSKIPEGIQVDSDGLITITTPNKLATLSVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGENTHMIHQKTQEKIWEFKGKLEQHLTGRRWRNIVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPADKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQGASDLAKEGQEENETCSGGNENQELQDGCSEAFEKRTSQKGESPLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1120 }, "evidence": [ { "id": "A0A287BT76", "url": "https://omabrowser.org/oma/group/A0A287BT76/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8C0D5-1", "protein_name": "Elongation factor-like GTPase 1", "gene_name": "Efl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLSGVDKMIRLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQVRGITMKSSAISLHYAEGHEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERETESQAKPHSEQGEQVYDWSAGLEDVDDSQLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKIGIKKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKPLFVQLILENIWSLYDAVLKKDKEKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISHAVLAMVCHKLPSPLDMTSERVEKLLCTGSQTFESLPPETQALKAAFMKCGSEDTAPVIIFVSKMFAVDVKALPQNKPRPLTQEEMAQRRERARQRHAEKLAAAQGQTSQGPTQDGGALETSPHEDEPRGDEPDVASVSRQPVSQEESSQEAFIAFARVFSGIARRGKKIFVLGPKYSPVDFLQRVPLGFSAPLEDLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGLQDFVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQVLIQETGEHVLVTAGEVHLQRCLDDLRERFAKIHISVSEPIIPFRETITKPPKVDMVNEEIGRQQKVAVIHQTKEEQSKIPEGIHVDSDGLITIPTPNKLATLSVRAIPLPEEVTRILEENSDLIRSMELLTSSLNEGRNTQAIHQKTQEKIWEFKGKLEKHLTGRKWRNTVDQIWSFGPRKCGPNILVSRSEDFQNSVWSGPAGRESKEASRFRDFGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWELNKCAEQGASDKQHQGQCDLAGEGQGGGKTCHVGDENQEQQDVCSEPFEETSQKGDSPVIDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK", "length": 1127 }, "evidence": [ { "id": "A0A287BT76", "url": "https://omabrowser.org/oma/group/A0A287BT76/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A287BT76", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A287BT76", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76" } ], "pmid": "" }, { "name": "translation elongation factor activity", "id": "GO:0003746", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003746", "evidence": [ { "database": "UniProtKB", "id": "A0A287BT76", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76" } ], "pmid": "" }, { "name": "ribosome binding", "id": "GO:0043022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043022", "evidence": [ { "database": "UniProtKB", "id": "A0A287BT76", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cytosolic ribosome assembly", "id": "GO:0042256", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042256", "evidence": [ { "database": "UniProtKB", "id": "A0A287BT76", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76" } ], "pmid": "" }, { "name": "GTP metabolic process", "id": "GO:0046039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046039", "evidence": [ { "database": "UniProtKB", "id": "A0A287BT76", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287BT76", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A287BT76", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 779, "end_pos": 781, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BT76-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1069, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BT76-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BT76" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BT76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BT76" }, { "id": "PS51722", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51722" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tr-type G", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 316, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 779, "end_pos": 781 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480KEC7-1", "uniprot_ac": "A0A480KEC7", "uniprot_id": "A0A480KEC7_PIG", "mass": { "chemical_mass": 60148.0, "monoisotopic_mass": 60148.0 }, "refseq": { "ac": "XP_020954435", "name": "tight junction-associated protein 1 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954435" }, "gene_names": [ { "name": "TJAP1", "type": "recommended", "evidence": [ { "id": "A0A480KEC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480KEC7" } ] }, { "name": "TJAP1", "type": "synonym", "evidence": [ { "id": "XP_020954435", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954435" } ] } ], "protein_names": [ { "name": "Tight junction associated protein 1", "type": "synonym", "evidence": [ { "id": "A0A480KEC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480KEC7/entry#names_and_taxonomy" } ] }, { "name": "tight junction-associated protein 1 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_020954435", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954435" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480KEC7", "url": "https://www.uniprot.org/uniprotkb/A0A480KEC7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TJAP1", "url": "https://www.uniprot.org/uniprotkb/A0A480KEC7", "locus": { "chromosome": "7", "start_pos": 38501527, "end_pos": 38475243, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001688", "url": "https://www.ensembl.org/id/ENSSSCG00000001688" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001688", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001688", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100736996", "url": "https://www.ncbi.nlm.nih.gov/gene/100736996", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR043441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043470", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043470", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR28664", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28664", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28664:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28664:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15453", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15453", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27583", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27583", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020954435", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954435", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480KEC7", "url": "https://www.uniprot.org/uniprotkb/A0A480KEC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480KEC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KEC7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRJ1", "url": "https://www.uniprot.org/uniprotkb/F1RRJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRJ1-1", "url": "https://www.uniprot.org/uniprotkb/F1RRJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSAAPAKKPYRKAPPEHRELRLEAPGSRLEQEEPLTDAERMKLLQQENEELRRRLASATRRTEALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHTLIKKAEMDRKTLDWEIVELTNKLLDARNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKFADLPCELQDMVRKHLHSGQEAVSPGPAPSLAPGAVVPTSVIARVLEKPESLLLNSAQSGSAGHPLAEDVFVHVDMSGGDPGDLASPPAPGSPTPQPNGECRSLGTARGSPEEELPLPAFEKLSPYPTPSPPHPLYPGRRVIEFSEDKVRIPRNSPLPNCTYATRQAISLSLVEEGGERARPSPVPSSPASAQASPQHQPSPGPPALSAPASSASSEEDLLASWQRAFVDRTPPPATVAQRTAFGRDALPELQRHFALGPAGGDEVQAPSSPPGESGLLLPAEAAPSFPREEDEEELNLPISPEEECRSLLPSDSGPEEGPGTPRTEGRPWALPSSSRPQRSPKRMGVHHLHRKDSLTQAQEQGNLLN", "length": 548, "header": "tr|A0A480KEC7-1|A0A480KEC7_PIG Isoform 1 of Tight junction associated protein 1 OS=Sus scrofa OX=9823 GN=TJAP1 PE=4 SV=1 CANONICAL=A0A480KEC7-1" }, "isoforms": [ { "isoform_ac": "A0A480KEC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KEC7/entry#A0A480KEC7-1", "sequence": { "sequence": "MTSAAPAKKPYRKAPPEHRELRLEAPGSRLEQEEPLTDAERMKLLQQENEELRRRLASATRRTEALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHTLIKKAEMDRKTLDWEIVELTNKLLDARNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKFADLPCELQDMVRKHLHSGQEAVSPGPAPSLAPGAVVPTSVIARVLEKPESLLLNSAQSGSAGHPLAEDVFVHVDMSGGDPGDLASPPAPGSPTPQPNGECRSLGTARGSPEEELPLPAFEKLSPYPTPSPPHPLYPGRRVIEFSEDKVRIPRNSPLPNCTYATRQAISLSLVEEGGERARPSPVPSSPASAQASPQHQPSPGPPALSAPASSASSEEDLLASWQRAFVDRTPPPATVAQRTAFGRDALPELQRHFALGPAGGDEVQAPSSPPGESGLLLPAEAAPSFPREEDEEELNLPISPEEECRSLLPSDSGPEEGPGTPRTEGRPWALPSSSRPQRSPKRMGVHHLHRKDSLTQAQEQGNLLN", "length": 548, "header": "tr|A0A480KEC7-1|A0A480KEC7_PIG Isoform 1 of Tight junction associated protein 1 OS=Sus scrofa OX=9823 GN=TJAP1 PE=4 SV=1 CANONICAL=A0A480KEC7-1" }, "locus": { "chromosome": "7", "start_pos": 38500850, "end_pos": 38494537, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056753.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056753.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038955.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038955.2" } ] } }, { "isoform_ac": "F1RRJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KEC7/entry#F1RRJ1-1", "sequence": { "sequence": "MTSAAPAKKPYRKAPPEHRELRLEAPGSRLEQEEPLTDAERMKLLQQENEELRRRLASATRRTEALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHTLASLSHSWIFAIKKAEMDRKTLDWEIVELTNKLLDARNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKFADLPCELQDMVRKHLHSGQEAVSPGPAPSLAPGAVVPTSVIARVLEKPESLLLNSAQSGSAGHPLAEDVFVHVDMSGGDPGDLASPPAPGSPTPQPNGECRSLGTARGSPEEELPLPAFEKLSPYPTPSPPHPLYPGRRVIEFSEDKVRIPRNSPLPNCTYATRQAISLSLVEEGGERARPSPVPSSPASAQASPQHQPSPGPPALSAPASSASSEEDLLASWQRAFVDRTPPPATVAQRTAFGRDALPELQRHFALGPAGGDEVQAPSSPPGESGLLLPAEAAPSFPREEDEEELNLPISPEEECRSLLPSDSGPEEGPGTPRTEGRPWALPSSSRPQRSPKRMGVHHLHRKDSLTQAQEQGNLLN", "length": 558, "header": "tr|F1RRJ1-1|A0A480KEC7_PIG Computationally mapped isoform of Tight junction associated protein 1 OS=Sus scrofa OX=9823 GN=TJAP1 PE=4 SV=5 CANONICAL=A0A480KEC7-1" }, "locus": { "chromosome": "7", 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"Protein Classification" ] }, { "id": "PF03096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020949626", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949626", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AIR1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIR1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AM28", "url": "https://www.uniprot.org/uniprotkb/A0A287AM28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AM28-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { 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"MKVLGHKIELLTGLLLHDVTMAGLQELRFPEEKPLLRGQDAAELENSDTFLLAVDTDWKEHDIETPYGLLHVVIRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYIIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTLPDTVLSHLFSQEELVSNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMGYMPSASMTRLARSRTASLTSASSVDGSRPQACTHSESSEGLGQVNHTMEVSC", "length": 391, "header": "tr|A0A287BRH1-1|A0A287BRH1_PIG Isoform 1 of Protein NDRG4 OS=Sus scrofa OX=9823 GN=NDRG4 PE=1 SV=2 CANONICAL=A0A287BRH1-1" }, "isoforms": [ { "isoform_ac": "A0A287AIR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1/entry#A0A287AIR1-1", "sequence": { "sequence": 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"sequence": { "sequence": "MKVLGHKIELLTGLLLHDVTMAGLQELRFPEEKPLLRGQDAAELENSDTFLLAVDTDWKEHDIETPYGLLHVVIRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYIIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTLPDTVLSHLFSQEELVSNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMGYIAYLKDRRLSGGAVPSASMTRLARSRTASLTSASSVDGSRPQACTHSESSEGLGQVNHTMEVSC", "length": 404, "header": "tr|A0A287AM28-1|A0A287BRH1_PIG Computationally mapped isoform of Protein NDRG4 OS=Sus scrofa OX=9823 GN=NDRG4 PE=1 SV=2 CANONICAL=A0A287BRH1-1" }, "locus": { "chromosome": "6", "start_pos": 20263602, "end_pos": 20224048, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046478.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046478.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044964.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044964.3" } ] } }, { "isoform_ac": "A0A287BRH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1/entry#A0A287BRH1-1", "sequence": { "sequence": "MKVLGHKIELLTGLLLHDVTMAGLQELRFPEEKPLLRGQDAAELENSDTFLLAVDTDWKEHDIETPYGLLHVVIRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYIIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTLPDTVLSHLFSQEELVSNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMGYMPSASMTRLARSRTASLTSASSVDGSRPQACTHSESSEGLGQVNHTMEVSC", "length": 391, "header": "tr|A0A287BRH1-1|A0A287BRH1_PIG Isoform 1 of Protein NDRG4 OS=Sus scrofa OX=9823 GN=NDRG4 PE=1 SV=2 CANONICAL=A0A287BRH1-1" }, "locus": { "chromosome": "6", "start_pos": 20263602, "end_pos": 20224048, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038980.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038980.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059236.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059236.2" } ] } }, { "isoform_ac": "F1RFT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1/entry#F1RFT1-1", "sequence": { "sequence": "MTSSEPSRQVLQTEPCCPGEVLRWTCAREMGMEGAGRCLVSLPQPGLVVSSLAAGESQSVPAPPGPSPHPHPPSLGLLLHDVTMAGLQELRFPEEKPLLRGQDAAELENSDTFLLAVDTDWKEHDIETPYGLLHVVIRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYIIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTLPDTVLSHLFSQEELVSNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMGYMPSASMTRLARSRTASLTSASSVDGSRPQACTHSESSEGLGQVNHTMEVSC", "length": 454, "header": "tr|F1RFT1-1|A0A287BRH1_PIG Computationally mapped isoform of Protein NDRG4 OS=Sus scrofa OX=9823 GN=NDRG4 PE=1 SV=5 CANONICAL=A0A287BRH1-1" }, "locus": { "chromosome": "6", "start_pos": 20263602, "end_pos": 20243228, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003101.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003101.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003021.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003021.5" } ] } }, { "isoform_ac": "I3LSD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1/entry#I3LSD8-1", "sequence": { "sequence": "MPRVSGTVSPLQEHDIETPYGLLHVVIRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYIIGIGVGAGAYVLAKFALSGLTSTLPDTVLSHLFSQEELVSNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMGYIAYLKDRRLSGGAVPSASMTRLARSRTASLTSASSVDGSRPQACTHSESSEGLGQVNHTMEVSC", "length": 328, "header": "tr|I3LSD8-1|A0A287BRH1_PIG Computationally mapped isoform of Protein NDRG4 OS=Sus scrofa OX=9823 GN=NDRG4 PE=1 SV=4 CANONICAL=A0A287BRH1-1" }, "locus": { "chromosome": "6", "start_pos": 20263602, "end_pos": 20255453, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022513.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022513.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027031.4", "url": "https://www.ensembl.org/id/ENSSSCP00000027031.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LSD8", "url": "https://www.uniprot.org/uniprotkb/I3LSD8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1" } ], "pmid": "" }, { "name": "cell projection membrane", "id": "GO:0031253", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031253", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1" } ], "pmid": "" }, { "name": "visual learning", "id": "GO:0008542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008542", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1" } ], "pmid": "" }, { "name": "positive regulation of ERK1 and ERK2 cascade", "id": "GO:0070374", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070374", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1" } ], "pmid": "" }, { "name": "negative regulation of platelet-derived growth factor receptor signaling pathway", "id": "GO:0010642", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010642", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1" } ], "pmid": "" }, { "name": "negative regulation of smooth muscle cell migration", "id": "GO:0014912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014912", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1" } ], "pmid": "" }, { "name": "negative regulation of smooth muscle cell proliferation", "id": "GO:0048662", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048662", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1" } ], "pmid": "" }, { "name": "cell migration involved in heart development", "id": "GO:0060973", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060973", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1" } ], "pmid": "" }, { "name": "regulation of endocytic recycling", "id": "GO:2001135", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001135", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1" } ], "pmid": "" }, { "name": "vesicle docking", "id": "GO:0048278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048278", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRH1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRH1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 384, "end_pos": 386, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": 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"gene_names": [ { "name": "NAP1L4", "type": "recommended", "evidence": [ { "id": "A0A481CQ30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30" } ] }, { "name": "NAP1L4", "type": "synonym", "evidence": [ { "id": "XP_013849443", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849443" } ] } ], "protein_names": [ { "name": "Nucleosome assembly protein 1 like 4", "type": "synonym", "evidence": [ { "id": "A0A481CQ30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30/entry#names_and_taxonomy" } ] }, { "name": "nucleosome assembly protein 1-like 4 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_013849443", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849443" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A481CQ30", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NAP1L4", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30", "locus": { "chromosome": "2", "start_pos": 2070142, "end_pos": 2117615, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012856", "url": "https://www.ensembl.org/id/ENSSSCG00000012856" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012856", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012856", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100737250", "url": "https://www.ncbi.nlm.nih.gov/gene/100737250", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037231", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037231", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YSGDFMY", "url": "https://omabrowser.org/oma/group/YSGDFMY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11875", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11875", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00956", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00956", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013849443", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849443", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AEQ6", "url": "https://www.uniprot.org/uniprotkb/A0A287AEQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": 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"database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADNSFSDGVPSESLEAAKNASNTEKLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAESEWHSENEEEDKLAGDVKDKVVIAEKEAAAAEEPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPSDSFFNFFSPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFTGEAIEDDDNFEEGEEGEEEELEGDEEGEDEDDADVNPKV", "length": 375, "header": "tr|A0A481CQ30-1|A0A481CQ30_PIG Isoform 1 of Nucleosome assembly protein 1 like 4 OS=Sus scrofa OX=9823 GN=NAP1L4 PE=1 SV=1 CANONICAL=A0A481CQ30-1" }, "isoforms": [ { "isoform_ac": "A0A287AEQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30/entry#A0A287AEQ6-1", "sequence": { "sequence": "SFSDGVPSESLEAAKNASNTEKLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAESEWHSENEEEDKLAGDVKDKVVIAEKEAAAAEEPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPSDSFFNFFSPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFTGEAIEDDDNFEEGEEGEEEELEGDEEGEDEDDADVNPKKEPSQPSECKQQ", "length": 382, "header": "tr|A0A287AEQ6-1|A0A481CQ30_PIG Computationally mapped isoform of Nucleosome assembly protein 1 like 4 OS=Sus scrofa OX=9823 GN=NAP1L4 PE=1 SV=3 CANONICAL=A0A481CQ30-1" }, "locus": { "chromosome": "2", "start_pos": 2097305, "end_pos": 2071152, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058070.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058070.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042323.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042323.3" } ] } }, { "isoform_ac": "A0A287AZH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30/entry#A0A287AZH1-1", "sequence": { "sequence": "MARSWEMRCPSSAWGPRLLEEALHEGSLQEIKHIQMADNSFSDGVPSESLEAAKNASNTEKLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAESEWHSENEEEDKLAGDVKDKVVIAEKEAAAAEEPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPSDSFFNFFSPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFTGEAIEDDDNFEEGEEGEEEELEGDEEGEDEDDADVNPKKEPSQPSECKQQ", "length": 421, "header": "tr|A0A287AZH1-1|A0A481CQ30_PIG Computationally mapped isoform of Nucleosome assembly protein 1 like 4 OS=Sus scrofa OX=9823 GN=NAP1L4 PE=1 SV=2 CANONICAL=A0A481CQ30-1" }, "locus": { "chromosome": "2", "start_pos": 2101646, "end_pos": 2071152, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058375.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058375.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049257.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049257.2" } ] } }, { "isoform_ac": "A0A481CQ30-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30/entry#A0A481CQ30-1", "sequence": { "sequence": "MADNSFSDGVPSESLEAAKNASNTEKLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAESEWHSENEEEDKLAGDVKDKVVIAEKEAAAAEEPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPSDSFFNFFSPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFTGEAIEDDDNFEEGEEGEEEELEGDEEGEDEDDADVNPKV", "length": 375, "header": "tr|A0A481CQ30-1|A0A481CQ30_PIG Isoform 1 of Nucleosome assembly protein 1 like 4 OS=Sus scrofa OX=9823 GN=NAP1L4 PE=1 SV=1 CANONICAL=A0A481CQ30-1" }, "locus": { "chromosome": "2", "start_pos": 2097962, "end_pos": 2072262, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096831.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096831.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078763.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078763.1" } ] } }, { "isoform_ac": "A0A5G2QGC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30/entry#A0A5G2QGC0-1", "sequence": { "sequence": "SFSDGVPSESLEAAKNASNTEKLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAESEWHSENEEEDKLAGDVKDKVVIAEKEAAAAEEPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPSDSFFNFFSPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFTGEAIEDDDNFEEGEEGEEEELEGDEEGEDEDDADVNPKVSRRGPPRPGDAALVNLCSMSPGWGGGLGKMTCPSRVRRVKQASRKILSQKLRGHLICRFPKLCLVYINLSSPEQPLVQIFSSFKILIELFCSVGFCVLGKGQRWDGGGRVFVCVFYE", "length": 488, "header": "tr|A0A5G2QGC0-1|A0A481CQ30_PIG Computationally mapped isoform of Nucleosome assembly protein 1 like 4 OS=Sus scrofa OX=9823 GN=NAP1L4 PE=1 SV=1 CANONICAL=A0A481CQ30-1" }, "locus": { "chromosome": "2", "start_pos": 2097305, "end_pos": 2073498, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068448.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068448.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063328.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063328.2" } ] } }, { "isoform_ac": "F1RYA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30/entry#F1RYA4-1", "sequence": { "sequence": "SFSDGVPSESLEAAKNASNTEKLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAESEWHSENEEEDKLAGDVKDKVVIAEKEAAAAEEPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPSDSFFNFFSPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFTGEAIEDDDNFEEGEEGEEEELEGDEEGEDEDDADVNPKKEPSQPSECKQQEPVLMTRGPHSSCPKSPGFGATCPWRACGFRSA", "length": 415, "header": "tr|F1RYA4-1|A0A481CQ30_PIG Computationally mapped isoform of Nucleosome assembly protein 1 like 4 OS=Sus scrofa OX=9823 GN=NAP1L4 PE=1 SV=4 CANONICAL=A0A481CQ30-1" }, "locus": { "chromosome": "2", "start_pos": 2097305, "end_pos": 2070297, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014052.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014052.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013667.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013667.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 117, "start_aa": "Thr", "end_pos": 117, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr117", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGC0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGC0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MEZ2-1", "protein_name": "Nucleosome assembly protein 1-like 4 isoform X1", "gene_name": "Nap1l4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAENSLSDGSPADSVEAAKNASNTEKLTDQVMQNPQVLAALQERLDNVSHTPSSYIETLPKAVKRRINALKQLQVRCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAESAWHSENEEEDKLAGDMKNKVVIAEKEAATAEELNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPNDYFTNPVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPNESFFNFFSPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFTGEAIEDDDNFEEGEEGEEEELEGDEEAEDEDDADVNPKKEPSQPAECKQQ", "length": 386 }, "evidence": [ { "id": "A0A481CQ30", "url": "https://omabrowser.org/oma/group/A0A481CQ30/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0ZQR9-1", "protein_name": "Nucleosome assembly protein 1 like 4", "gene_name": "NAP1L4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRDGFLGGGAARVSLRGVWRCWGDAARAGTERKTLKRQTSLKVDTGTQMADNSSSKAEDTASDSVEAAKNASDKKEKLADQVMQNPQVLAALQERLDNTALTPSSYIETLPKAVKRRIDALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFINGEAEPTDAESEWHSENEEEEKLAGDLKNVVVIEEKAEAEEINVKGIPDFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFSLEFHFGPNDYFSNTVLTKTYKMKSEPDKTDPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPNDSFFNFFNPIKVSGDGESLDEDSEFTLAADFEIGHFFRERIVPRAVLYFTGEAIEDDDNFEEGEEGEEEELEGEEEGEEEEDAESDPKV", "length": 424 }, "evidence": [ { "id": "A0A481CQ30", "url": "https://omabrowser.org/oma/group/A0A481CQ30/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q55ED1-1", "protein_name": "Nucleosome assembly protein nap1", "gene_name": "nap1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSENNEIEMELPFDSSAITSTEVLDRVNALLTLQDTQNELTEQMEKEILEIEKKYLKKFQPLAEKRFEIVSGKVEPTKEDQQCKAPIQVENLKSVPTDKGIPKFWLHVLQNTEVKDIIEECDIEALEYLVDIKIVQVGDAQDYSLDFHFSENPFFTNTVISKTVKLEEDNELNEIVSTPINWKDGKNFTVQSKKKTVKSKPTKGKAATTTSTTVQEVVPCFFSTFVSPNQDPTSDEEADEIMYIQYQIIAKLKDIVIPEAVNFFLGRASDAEENDYDFGEDFEDEEGEDDDEEDDEEEQTIKKPSGKGKAQPQQPQDCKQQ", "length": 321 }, "evidence": [ { "id": "A0A481CQ30", "url": "https://omabrowser.org/oma/group/A0A481CQ30/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5U2Z3-1", "protein_name": "Nucleosome assembly protein 1-like 4", "gene_name": "Nap1l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAENSLSDGGPADSVEAAKNASNTEKLTDQVMQNPQVLAALQERLDNVSHTPSSYIETLPKAVKRRINALKQLQVRCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAESAWHSENEEDDKLAGDMKNKVVIAEKEAAAVEELNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPNDYFTNPVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPNESFFNFFSPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFTGEAIEDDDNFEEGEEGEEEELEGDEEGEDEDDADVNPKKEPIQPAECKQQ", "length": 386 }, "evidence": [ { "id": "A0A481CQ30", "url": "https://omabrowser.org/oma/group/A0A481CQ30/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q78ZA7-1", "protein_name": "Nucleosome assembly protein 1-like 4", "gene_name": "Nap1l4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAENSLSDGGPADSVEAAKNASNTEKLTDQVMQNPQVLAALQERLDNVSHTPSSYIETLPKAVKRRINALKQLQVRCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAESAWHSENEEEDKLAGDMKNKVVIAEKEAATVEELNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPNDYFTNPVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPNESFFNFFSPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFTGEAIEDDDNFEEGEEGEEEELEGDEEGEDEDDADVNPKV", "length": 375 }, "evidence": [ { "id": "A0A481CQ30", "url": "https://omabrowser.org/oma/group/A0A481CQ30/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q99733-1", "protein_name": "Nucleosome assembly protein 1-like 4", "gene_name": "NAP1L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADHSFSDGVPSDSVEAAKNASNTEKLTDQVMQNPRVLAALQERLDNVPHTPSSYIETLPKAVKRRINALKQLQVRCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAESEWHSENEEEEKLAGDMKSKVVVTEKAAATAEEPDPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPNDYFTNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPNESFFNFFNPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFTGEAIEDDDNFEEGEEGEEEELEGDEEGEDEDDAEINPKV", "length": 375 }, "evidence": [ { "id": "A0A481CQ30", "url": "https://omabrowser.org/oma/group/A0A481CQ30/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9ZUP3-1", "protein_name": "Nucleosome assembly protein 1;2", "gene_name": "NAP1;2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSNDKDSMNMSDLSTALNEEDRAGLVNALKNKLQNLAGQHSDVLENLTPPVRKRVEFLREIQNQYDEMEAKFFEERAALEAKYQKLYQPLYTKRYEIVNGVVEVEGAAEEVKSEQGEDKSAEEKGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKLEFFFDQNPYFKNTVLTKTYHMIDEDEPILEKALGTEIEWYPGKCLTQKILKKKPKKGSKNTKPITKTEDCESFFNFFSPPQVPDDDEDLDDDMADELQGQMEHDYDIGSTIKEKIISHAVSWFTGEAVEADDLDIEDDDDEIDEDDDEEDEEDDEDDEEEDDEDDDEEEEADQGKKSKKKSSAGHKKAGRSQLAEGQAGERPPECKQQ", "length": 379 }, "evidence": [ { "id": "A0A481CQ30", "url": "https://omabrowser.org/oma/group/A0A481CQ30/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A481CQ30", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "A0A481CQ30", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A481CQ30", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A481CQ30", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "nucleosome assembly", "id": "GO:0006334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006334", "evidence": [ { "database": "UniProtKB", "id": "A0A481CQ30", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A481CQ30", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30" } ], "pmid": "" }, { "name": "histone binding", "id": "GO:0042393", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042393", "evidence": [ { "database": "UniProtKB", "id": "A0A481CQ30", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30" } ], "pmid": "" }, { "name": "nucleosome binding", "id": "GO:0031491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031491", "evidence": [ { "database": "UniProtKB", "id": "A0A481CQ30", "url": "https://www.uniprot.org/uniprotkb/A0A481CQ30" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 20, "end_pos": 22, "annotation": "n_glycosylation_sequon" }, { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 117 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 20, "end_pos": 22 }, { "start_pos": 259, "end_pos": 261 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A481BAP3-1", "uniprot_ac": "A0A481BAP3", "uniprot_id": "A0A481BAP3_PIG", "mass": { "chemical_mass": 46417.0, "monoisotopic_mass": 46417.0 }, "refseq": { "ac": "XP_020925392", "name": "TBC1 domain family member 13 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925392" }, "gene_names": [ { "name": "TBC1D13", "type": "recommended", "evidence": [ { "id": "A0A481BAP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3" } ] }, { "name": "TBC1D13", "type": "synonym", "evidence": [ { "id": "XP_020925392", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925392" } ] } ], "protein_names": [ { "name": "TBC1 domain family member 13", "type": "recommended", "evidence": [ { "id": "A0A481BAP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3/entry#names_and_taxonomy" } ] }, { "name": "TBC1 domain family member 13 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020925392", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925392" } ] } ], "function": [ { "annotation": "Acts as a GTPase-activating protein for RAB35. Together with RAB35 may be involved in regulation of insulin-induced glucose transporter SLC2A4/GLUT4 translocation to the plasma membrane in adipocytes.", "evidence": [ { "database": "UniProtKB", "id": "A0A481BAP3", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3#function" }, { "database": "UniProtKB", "id": "ARBA00059763", "url": "https://www.uniprot.org/uniprotkb/ARBA00059763#function" }, { "database": "UniProtKB", "id": "F1RR65", "url": "https://www.uniprot.org/uniprotkb/F1RR65#function" }, { "database": "UniProtKB", "id": "A0A287B4Q8", "url": "https://www.uniprot.org/uniprotkb/A0A287B4Q8#function" }, { "database": "UniProtKB", "id": "A0A286ZTD1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTD1#function" }, { "database": "UniProtKB", "id": "A0A8W4FKT4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKT4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A481BAP3", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TBC1D13", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3", "locus": { "chromosome": "1", "start_pos": 269152284, "end_pos": 269134160, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005660", "url": "https://www.ensembl.org/id/ENSSSCG00000005660" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005660", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005660", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100520169", "url": "https://www.ncbi.nlm.nih.gov/gene/100520169", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520169", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520169", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TEFPCEE", "url": "https://omabrowser.org/oma/group/TEFPCEE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A481BAP3", "url": "https://www.orthodb.org/?gene=A0A481BAP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22957", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22957:SF27", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957:SF27", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8854214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020925392", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925392", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZTD1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZTD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTD1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAC0", "url": "https://www.uniprot.org/uniprotkb/A0A287AAC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAC0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B4Q8", "url": "https://www.uniprot.org/uniprotkb/A0A287B4Q8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B4Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B4Q8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481BAP3", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481BAP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1L2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1L2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1L2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKT4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKT4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR65", "url": "https://www.uniprot.org/uniprotkb/F1RR65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR65-1", "url": "https://www.uniprot.org/uniprotkb/F1RR65-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSLHKSRIADFQDVLKEPTIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTAILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDISFFQRATEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPNKNSASSSVSKYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPSSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSQ", "length": 400, "header": "tr|A0A481BAP3-1|A0A481BAP3_PIG Isoform 1 of TBC1 domain family member 13 OS=Sus scrofa OX=9823 GN=TBC1D13 PE=1 SV=1 CANONICAL=A0A481BAP3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZTD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3/entry#A0A286ZTD1-1", "sequence": { "sequence": "MGPLHRPPIADFQDVLKEPTIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTAILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHVSRSPPRGRRLRGGERGGLWSGRLCPDISFFQRATEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPNKNSASSSVSKYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPSSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSQ", "length": 394, "header": "tr|A0A286ZTD1-1|A0A481BAP3_PIG Computationally mapped isoform of TBC1 domain family member 13 OS=Sus scrofa OX=9823 GN=TBC1D13 PE=1 SV=3 CANONICAL=A0A481BAP3-1" }, "locus": { "chromosome": "1", "start_pos": 269149879, "end_pos": 269134791, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048153.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048153.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034826.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034826.2" } ] } }, { "isoform_ac": "A0A287AAC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3/entry#A0A287AAC0-1", "sequence": { "sequence": "MSSLHKSRIADFQDVLKEPTIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTAILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDISFFQRATEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSQ", "length": 275, "header": "tr|A0A287AAC0-1|A0A481BAP3_PIG Computationally mapped isoform of TBC1 domain family member 13 OS=Sus scrofa OX=9823 GN=TBC1D13 PE=1 SV=2 CANONICAL=A0A481BAP3-1" }, "locus": { "chromosome": "1", "start_pos": 269149879, "end_pos": 269134677, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041170.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041170.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040885.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040885.2" } ] } }, { "isoform_ac": "A0A287B4Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3/entry#A0A287B4Q8-1", "sequence": { "sequence": "MSSLHKSRIADFQDVLKEPTIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTAILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDISFFQRATEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPNKNSASSSVSKYEGMNEIVGPLYYTFATDPSSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSQ", "length": 369, "header": "tr|A0A287B4Q8-1|A0A481BAP3_PIG Computationally mapped isoform of TBC1 domain family member 13 OS=Sus scrofa OX=9823 GN=TBC1D13 PE=1 SV=1 CANONICAL=A0A481BAP3-1" }, "locus": { "chromosome": "1", "start_pos": 269149879, "end_pos": 269134677, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057982.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057982.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051095.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051095.1" } ] } }, { "isoform_ac": "A0A481BAP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3/entry#A0A481BAP3-1", "sequence": { "sequence": "MSSLHKSRIADFQDVLKEPTIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTAILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDISFFQRATEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPNKNSASSSVSKYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPSSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSQ", "length": 400, "header": "tr|A0A481BAP3-1|A0A481BAP3_PIG Isoform 1 of TBC1 domain family member 13 OS=Sus scrofa OX=9823 GN=TBC1D13 PE=1 SV=1 CANONICAL=A0A481BAP3-1" }, "locus": { "chromosome": "1", "start_pos": 269149879, "end_pos": 269134677, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049954.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049954.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046684.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046684.2" } ] } }, { "isoform_ac": "A0A5G2R1L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3/entry#A0A5G2R1L2-1", "sequence": { "sequence": "MVTKPVILGIADFQDVLKEPTIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTAILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHVSRSPPRGRRLRGGERGGLWSGRLCPDISFFQRATEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNGRSLTEAGGPSGGTLTRPSLAEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSQ", "length": 346, "header": "tr|A0A5G2R1L2-1|A0A481BAP3_PIG Computationally mapped isoform of TBC1 domain family member 13 OS=Sus scrofa OX=9823 GN=TBC1D13 PE=1 SV=2 CANONICAL=A0A481BAP3-1" }, "locus": { "chromosome": "1", "start_pos": 269149879, "end_pos": 269135611, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089586.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089586.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071004.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071004.2" } ] } }, { "isoform_ac": "A0A8W4FKT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3/entry#A0A8W4FKT4-1", "sequence": { "sequence": "MVTKPVILGIADFQDVLKEPTIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTAILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHVSRSPPRGRRLRGGERGGLWSGRLCPDISFFQRATEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPNKNSASSSVSKYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPSSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSQ", "length": 395, "header": "tr|A0A8W4FKT4-1|A0A481BAP3_PIG Computationally mapped isoform of TBC1 domain family member 13 OS=Sus scrofa OX=9823 GN=TBC1D13 PE=1 SV=1 CANONICAL=A0A481BAP3-1" }, "locus": { "chromosome": "1", "start_pos": 269149879, "end_pos": 269135611, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106544.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106544.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078906.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078906.1" } ] } }, { "isoform_ac": "F1RR65-1", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3/entry#F1RR65-1", "sequence": { "sequence": "MSSLHKSRIADFQDVLKEPTIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTAILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDISFFQRATEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPNKNSASSSVSKYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPSSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLMTTPSQTSARSYRKPRSSKTHSSPAARGLSLGEKPPLTPPPPPPPMS", "length": 406, "header": "tr|F1RR65-1|A0A481BAP3_PIG Computationally mapped isoform of TBC1 domain family member 13 OS=Sus scrofa OX=9823 GN=TBC1D13 PE=1 SV=2 CANONICAL=A0A481BAP3-1" }, "locus": { "chromosome": "1", "start_pos": 269149955, "end_pos": 269134677, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006223.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006223.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006064.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006064.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1L2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1L2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520169", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520169", "resource": "KEGG Pathway" }, { "id": "R-SSC-8854214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "resource": "Reactome", "description": "TBC/RABGAPs" } ], "orthologs": [ { "uniprot_canonical_ac": "D4AEG7-1", "protein_name": "TBC1 domain family member 13", "gene_name": "Tbc1d13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSLHKSRIADFQDVLKEPSIVLEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERDSWDSILAKQRGLYSQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDISFFQRATEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPHKNNAPSALNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKEKDVELYLKLQEQSIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADGNRFDFLLLVCCAMLILIREQLLKGDFTVNMRLLQDYPISDVCKILQKAKELQDSK", "length": 400 }, "evidence": [ { "id": "A0A481BAP3", "url": "https://omabrowser.org/oma/group/A0A481BAP3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MXD4-1", "protein_name": "TBC1 domain family member 13", "gene_name": "TBC1D13", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSSLHKSRIADFQDVLKEPTIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTSILAKQRELYSQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFRDNEVLLQIDKDVRRLCPDISFFQRATEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPQKNSAPSMNEYVVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWREHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDMELYLKLQEQNIKPQFFAFRWLTLLLSQEFVLPDVIRIWDSLFADSNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITDVCQVLQKAKELQDSQ", "length": 399 }, "evidence": [ { "id": "A0A481BAP3", "url": "https://omabrowser.org/oma/group/A0A481BAP3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3IJA9-1", "protein_name": "TBC1 domain family member 13", "gene_name": "Tbc1d13", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSLHKSRIADFQDVLKEPSIVLEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTSILAKQRGLYSQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDISFFQRATEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPHKNNAPPALNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSK", "length": 400 }, "evidence": [ { "id": "A0A481BAP3", "url": "https://omabrowser.org/oma/group/A0A481BAP3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8R3D1-1", "protein_name": "TBC1 domain family member 13", "gene_name": "Tbc1d13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLHKSRIADFQDVLKEPSIVLEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTSILAKQRGLYSQFLREMIIQPGIAKANMGVFREDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDISFFQRATEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPHKNSAPSALNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQEQSIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADGNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSK", "length": 400 }, "evidence": [ { "id": "A0A481BAP3", "url": "https://omabrowser.org/oma/group/A0A481BAP3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NVG8-1", "protein_name": "TBC1 domain family member 13", "gene_name": "TBC1D13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSLHKSRIADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTSILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDISFFQRATDYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPHKNSVPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLMLIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSK", "length": 400 }, "evidence": [ { "id": "A0A481BAP3", "url": "https://omabrowser.org/oma/group/A0A481BAP3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9SVN9-1", "protein_name": "Ypt/Rab-GAP domain of gyp1p superfamily protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAKKGIPEWLNSSLWSSSPPIDDRHLRNPAATSITPPSPPIVERPPFSSSPSAISTAPAPPLPVRPPSKSEINDLQNGSGNDGAGIETPAVSSVEDVSRKAQVVAELSKKVIDLKELRKIASQGLPDDAGIRSIVWKLLLDYLSPDRSLWSSELAKKRSQYKQFKEELLMNPSEVTRKMDKSKGGDSNDPKIESPGALSRSEITHEDHPLSLGTTSLWNNFFKDTEVLEQIERDVMRTHPDMHFFSGDSAVAKSNQDALKNILTIFAKLNPGIRYVQGMNEILAPIFYIFKNDPDKGNAAYAESDAFFCFVELMSGFRDNFCQQLDNSVVGIRYTITRLSLLLKHHDEELWRHLEVTTKINPQFYAFRWITLLLTQEFNFVESLHIWDTLLSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQNYPPTNISHMLYVADKLRTK", "length": 449 }, "evidence": [ { "id": "A0A481BAP3", "url": "https://omabrowser.org/oma/group/A0A481BAP3/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VSM8-1", "protein_name": "TBC1 domain family member 13", "gene_name": "GAPsec", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSIFKARVKEFEDVLAGPQDLIDLKQLRKLAFNGVPDVQSFRALSWKLLLGYLGPRRSSWTTTLAQKRALYKQFIEELVLPPGHSSNRASVDGGDGDKVDSGGVGLQDHPLSEGPESAWNTFFNDNEFLLQIDKDVRRLCPDISFFQQPTDYPCEIVVHSKGEHGRRLHERVVPAVLSSANVERKGLGMTKINLITKRSVENYAAMEEGQEAHWEVVQRILFIYAKLNPGQGYVQGMNEIVGPIYYVMASDPDLTYRAHAEADCFFCFTALMSEIRDFFIKTLDDAEGGIKFMMARLSNMLKSKDLSIYELLRSQELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSVFADEQRFDFLIKICCSMILIQREAILENDFASNVKLLQNYPPIDINVVIAHAGSLA", "length": 403 }, "evidence": [ { "id": "A0A481BAP3", "url": "https://omabrowser.org/oma/group/A0A481BAP3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A481BAP3", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A481BAP3", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A481BAP3", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A481BAP3", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A481BAP3", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A481BAP3", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 175, "end_pos": 177, "annotation": "n_glycosylation_sequon" }, { "start_pos": 181, "end_pos": 183, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A481BAP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481BAP3" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 345, "start_aa": "Pro", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 175, "end_pos": 177 }, { "start_pos": 181, "end_pos": 183 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480XS68-1", "uniprot_ac": "A0A480XS68", "uniprot_id": "A0A480XS68_PIG", "mass": { "chemical_mass": 61113.0, "monoisotopic_mass": 61113.0 }, "refseq": { "ac": "XP_003125809", "name": "sorting nexin-27 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125809" }, "gene_names": [ { "name": "SNX27", "type": "recommended", "evidence": [ { "id": "A0A480XS68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68" } ] }, { "name": "SNX27", "type": "synonym", "evidence": [ { "id": "XP_003125809", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125809" } ] } ], "protein_names": [ { "name": "Sorting nexin-27", "type": "recommended", "evidence": [ { "id": "A0A480XS68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68/entry#names_and_taxonomy" } ] }, { "name": "sorting nexin-27 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003125809", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125809" } ] } ], "function": [ { "annotation": "Involved in the retrograde transport from endosome to plasma membrane, a trafficking pathway that promotes the recycling of internalized transmembrane proteins. Following internalization, endocytosed transmembrane proteins are delivered to early endosomes and recycled to the plasma membrane instead of being degraded in lysosomes. SNX27 specifically binds and directs sorting of a subset of transmembrane proteins containing a PDZ-binding motif at the C-terminus: following interaction with target transmembrane proteins, associates with the retromer complex, preventing entry into the lysosomal pathway, and promotes retromer-tubule based plasma membrane recycling. SNX27 also binds with the WASH complex. Interacts with membranes containing phosphatidylinositol-3-phosphate (PtdIns(3P)). May participate in establishment of natural killer cell polarity. Recruits CYTIP to early endosomes.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG8#function" }, { "database": "UniProtKB", "id": "ARBA00058700", "url": "https://www.uniprot.org/uniprotkb/ARBA00058700#function" }, { "database": "UniProtKB", "id": "F1ST14", "url": "https://www.uniprot.org/uniprotkb/F1ST14#function" }, { "database": "UniProtKB", "id": "A0A286ZU70", "url": "https://www.uniprot.org/uniprotkb/A0A286ZU70#function" }, { "database": "UniProtKB", "id": "A0A480XS68", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68#function" }, { "database": "UniProtKB", "id": "A0A8D0XY02", "url": "https://www.uniprot.org/uniprotkb/A0A8D0XY02#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480XS68", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SNX27", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68", "locus": { "chromosome": "4", "start_pos": 97525181, "end_pos": 97620788, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006619", "url": "https://www.ensembl.org/id/ENSSSCG00000006619" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006619", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006619", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01777", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01777", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06886", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06886", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13338", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13338", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14473", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14473", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd23070", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23070", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516009", "url": "https://www.ncbi.nlm.nih.gov/gene/100516009", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001683", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001683", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037833", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037833", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037835", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037835", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516009", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516009", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PNEFPHN", "url": "https://omabrowser.org/oma/group/PNEFPHN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZU70", "url": "https://www.orthodb.org/?gene=A0A286ZU70", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A480XS68", "url": "https://www.orthodb.org/?gene=A0A480XS68", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12431", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12431", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12431:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12431:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00787", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00787", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00788", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00788", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003125809", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125809", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZU70", "url": "https://www.uniprot.org/uniprotkb/A0A286ZU70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZU70-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZU70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480XS68", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480XS68-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNG8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3E5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3E5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3E5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3E5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0XY02", "url": "https://www.uniprot.org/uniprotkb/A0A8D0XY02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0XY02-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0XY02-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1G498", "url": "https://www.uniprot.org/uniprotkb/A0A8D1G498", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1G498-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1G498-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST14", "url": "https://www.uniprot.org/uniprotkb/F1ST14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST14-1", "url": "https://www.uniprot.org/uniprotkb/F1ST14-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADEDGEGIHPAAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTVRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVAT", "length": 541, "header": "tr|A0A480XS68-1|A0A480XS68_PIG Isoform 1 of Sorting nexin-27 OS=Sus scrofa OX=9823 GN=SNX27 PE=1 SV=1 CANONICAL=A0A480XS68-1" }, "isoforms": [ { "isoform_ac": "A0A286ZU70-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68/entry#A0A286ZU70-1", "sequence": { "sequence": "MADEDGEGIHPAAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTVRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLEFNYMHECFERVFCELKWRKENIFQMARSQQRDVAT", "length": 498, "header": "tr|A0A286ZU70-1|A0A480XS68_PIG Computationally mapped isoform of Sorting nexin-27 OS=Sus scrofa OX=9823 GN=SNX27 PE=1 SV=1 CANONICAL=A0A480XS68-1" }, "locus": { "chromosome": "4", "start_pos": 97620626, "end_pos": 97537444, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053594.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053594.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035168.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035168.1" } ] } }, { "isoform_ac": "A0A480XS68-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68/entry#A0A480XS68-1", "sequence": { "sequence": "MADEDGEGIHPAAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTVRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVAT", "length": 541, "header": "tr|A0A480XS68-1|A0A480XS68_PIG Isoform 1 of Sorting nexin-27 OS=Sus scrofa OX=9823 GN=SNX27 PE=1 SV=1 CANONICAL=A0A480XS68-1" }, "locus": { "chromosome": "4", "start_pos": 97620626, "end_pos": 97537444, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099921.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099921.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080051.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080051.1" } ] } }, { "isoform_ac": "A0A5G2QNG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68/entry#A0A5G2QNG8-1", "sequence": { "sequence": "MADEDGEGIHPAAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTVRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEGSLLQPARCFLDLVIRQEHHGLFCLGSVPAAIP", "length": 559, "header": "tr|A0A5G2QNG8-1|A0A480XS68_PIG Computationally mapped isoform of Sorting nexin-27 OS=Sus scrofa OX=9823 GN=SNX27 PE=1 SV=1 CANONICAL=A0A480XS68-1" }, "locus": { "chromosome": "4", "start_pos": 97620626, "end_pos": 97529270, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076454.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076454.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065595.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065595.1" } ] } }, { "isoform_ac": "A0A5G2R3E5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68/entry#A0A5G2R3E5-1", "sequence": { "sequence": "MADEDGEGIHPAAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTVRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLEVRVHLVYSWPVRWLWPAHWEYFDTHLLCFRSHLGGNEIKSV", "length": 403, "header": "tr|A0A5G2R3E5-1|A0A480XS68_PIG Computationally mapped isoform of Sorting nexin-27 OS=Sus scrofa OX=9823 GN=SNX27 PE=1 SV=1 CANONICAL=A0A480XS68-1" }, "locus": { "chromosome": "4", "start_pos": 97620626, "end_pos": 97539471, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075019.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075019.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070867.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070867.1" } ] } }, { "isoform_ac": "A0A8D0XY02-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68/entry#A0A8D0XY02-1", "sequence": { "sequence": "MADEDGEGIHPAAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTVRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMNQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVAT", "length": 491, "header": "tr|A0A8D0XY02-1|A0A480XS68_PIG Computationally mapped isoform of Sorting nexin-27 OS=Sus scrofa OX=9823 GN=SNX27 PE=1 SV=1 CANONICAL=A0A480XS68-1" }, "locus": { "chromosome": "4", "start_pos": 97620626, "end_pos": 97537444, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050431.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050431.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049079.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049079.1" } ] } }, { "isoform_ac": "A0A8D1G498-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68/entry#A0A8D1G498-1", "sequence": { "sequence": "MADEDGEGIHPAAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTVRKWLFTTEEEILLNDNDLAVTYFFHQYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVAT", "length": 511, "header": "tr|A0A8D1G498-1|A0A480XS68_PIG Computationally mapped isoform of Sorting nexin-27 OS=Sus scrofa OX=9823 GN=SNX27 PE=1 SV=1 CANONICAL=A0A480XS68-1" }, "locus": { "chromosome": "4", "start_pos": 97620626, "end_pos": 97537444, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044567.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044567.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052775.1", "url": "https://www.ensembl.org/id/ENSSSCP00000052775.1" } ] } }, { "isoform_ac": "F1ST14-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68/entry#F1ST14-1", "sequence": { "sequence": "MADEDGEGIHPAAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTVRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEC", "length": 528, "header": "tr|F1ST14-1|A0A480XS68_PIG Computationally mapped isoform of Sorting nexin-27 OS=Sus scrofa OX=9823 GN=SNX27 PE=1 SV=2 CANONICAL=A0A480XS68-1" }, "locus": { "chromosome": "4", "start_pos": 97620626, "end_pos": 97538294, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007253.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007253.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007058.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007058.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R3E5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3E5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516009", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516009", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AIQ9-1", "protein_name": "Sorting nexin-27", "gene_name": "SNX27", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MADEEGEGPPRSAAAPQRNGGDEGAPGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLGGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISIPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDITTVTVRVKKNSTTDQVYQAVAAKVGMDSVTANYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLFTTEEEALLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLCEQRKMVMYLNMLRTCEGYNEIIFPHCSCDSRRKGHVITAISIKHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEVEEEATDKDNQNCSTDTVCSKNIFQTVRSQQRDAAT", "length": 550 }, "evidence": [ { "id": "A0A480XS68", "url": "https://omabrowser.org/oma/group/A0A480XS68/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A5PKA5-1", "protein_name": "Sorting nexin-27", "gene_name": "SNX27", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": 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"MADEDGEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVAT", "length": 541 }, "evidence": [ { "id": "A0A480XS68", "url": "https://omabrowser.org/oma/group/A0A480XS68/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W486-1", "protein_name": "3.4.24.-", "gene_name": "Snx27", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSIVGENHPLPTPTPASAVVTASSGGGGGGAVVMGVGVGVTTANGPRVVTIYKTETGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLENGAAEKAGIKKGDRILEVNGVSVEGATHKQVVDLIKSGGDCLTLTVISVTQQEADRLEPQEDQSGYSYIDYSDKRSLPISIPDYGIVNRNGERYIVFNIHMAGRQLCSRRYREFANLHSLLRKEFSGFNFPKLPGKWPFQLSEQQLDTRRRGLEQYLEKVCAVRVIAESDAVQDFLTDTEDDISASPVDIKVMLPDHEVSTVSVKKSSNAQVVWEILVQRANLTAYTQQYFYLFEIVEYNFERKLQPHEIPHQLYVQNYSTASSTCLCVRRWLFSVAKELTLPDGEQAGRFIFYQAVDEVNRGNIRADGRLYELKALQDAKKAGDYLALARTLPGYGDVVFPHCSCDSRKEGHVVPAVGMKSFRLHACREDGSLEAQMVELTWDSITRSESDEESMSFCFQYNRPDKPARWVKVYTPYHAFLADCFDRIMEERKWEDSGD", "length": 531 }, "evidence": [ { "id": "A0A480XS68", "url": "https://omabrowser.org/oma/group/A0A480XS68/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 10, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A480XS68", "url": 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"UniProtKB", "id": "A0A480XS68", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68" } ], "pmid": "" }, { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A480XS68", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68" } ], "pmid": "" }, { "name": "endocytic recycling", "id": "GO:0032456", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032456", "evidence": [ { "database": "UniProtKB", "id": "A0A480XS68", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68" } ], "pmid": "" }, { "name": "regulation of synapse maturation", "id": "GO:0090128", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090128", "evidence": [ { "database": "UniProtKB", "id": "A0A480XS68", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68" } ], "pmid": "" }, { "name": "regulation of postsynaptic membrane neurotransmitter receptor levels", "id": "GO:0099072", "url": 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"pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 213, "end_pos": 215, "annotation": "n_glycosylation_sequon" }, { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 325, "end_pos": 327, "annotation": "n_glycosylation_sequon" }, { "start_pos": 345, "end_pos": 347, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480XS68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480XS68" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 136, "start_aa": "Val", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": 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G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZUI0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUI0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A481BE79", "url": "https://www.uniprot.org/uniprotkb/A0A481BE79" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": 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"Follistatin-related protein 5", "type": "recommended", "evidence": [ { "id": "A0A480ZJN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6/entry#names_and_taxonomy" } ] }, { "name": "Follistatin-like protein 5", "type": "synonym", "evidence": [ { "id": "A0A480ZJN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6/entry#names_and_taxonomy" } ] }, { "name": "follistatin-related protein 5 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020956966", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956966" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480ZJN6", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FSTL5", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6", "locus": { "chromosome": "8", "start_pos": 50264275, "end_pos": 51052864, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027183", "url": "https://www.ensembl.org/id/ENSSSCG00000027183" } ] } } ], "crossref": [ { "id": "ENSSSCG00000027183", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027183", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00096", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00096", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00104", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00104", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd05736", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05736", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100738432", "url": "https://www.ncbi.nlm.nih.gov/gene/100738432", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050653", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050653", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100738432", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738432", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IHAGNYT", "url": "https://omabrowser.org/oma/group/IHAGNYT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480ZJN6", "url": "https://www.orthodb.org/?gene=A0A480ZJN6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10913", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10913", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10913:SF44", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10913:SF44", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07648", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07648", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020956966", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956966", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZWP9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZWP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZWP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZWP9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480ZJN6", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480ZJN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L571", "url": "https://www.uniprot.org/uniprotkb/I3L571", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L571-1", "url": "https://www.uniprot.org/uniprotkb/I3L571-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L767", "url": "https://www.uniprot.org/uniprotkb/I3L767", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L767-1", "url": "https://www.uniprot.org/uniprotkb/I3L767-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFKCWSAVLFLGFIFLESEGRPTKEAGYGLKSYQPLIRLRHKQEKSQESSRVKGFLIQNGPLGSCENKYCGLGRHCVLNRETGQAECACVDLCSQHYKPVCGSDGGFYENHCEVHRAACLKKRKITIVHNEDCFFQGDNCKATEYSKMKSMLLDLQNQKYITHNNENPNGDDIFRKKLLVDELFKYFDADSNGLVDINELTQVIKQEELDKDLSGCTLYDLLKYDDFNSDKHLALEEFYRTFQVIQLSLPEDQKLSITAATVGQSAVLSCAVQGALRPPIIWKRNNIILNNLELEDINDFGDDGSLYITKVTTTHMGNYTCYADGYEHIYQTHIFQVNVPPVIRVYPESQAREPGVTASLRCHAEGIPNPQLGWLKNGIDITPKLSKQLTLQANGSEVHISNVRYEDTGAYTCIAKNDAGVDEDISSLFVEDSARKTLANILWREEGLGIGNMFYVFYEDGIKVIQPIECEFQRHIKPSEKLLGFQDEVCPKTEGDEVQRCVWASAVNVKDKFIYAAQPTLDRVLVVDVQSQKVVQAVSTDPVPVKLHYDKSHDQVWVLSWGTMAKTSPTLQVITLASGNVPHHTIHTQPVGKQFDRVDDFFIPATTLLITHMRFGFILHKDEAALQKIDLETMSYIKTIHLKDYKCVPQSLAYTHLGGYYFIGCKPDSTGATPPQLLVDSVTDSVIGFNSDVTGTPYVSPDGHYLVSINDVKGLVRVQYITIRGEIQEAFDIHTNLHISDLAFQSSFTEAHQYNIYGSSSTQTDVLFAELASGKVKMIKSLKEPLKAEEWPWSQKNRQIQDSGLFGQYLMTPSKDSLFILDGRLNKLNCEITEVEKGNTVIWVGDA", "length": 847, "header": "tr|A0A480ZJN6-1|A0A480ZJN6_PIG Isoform 1 of Follistatin-related protein 5 OS=Sus scrofa OX=9823 GN=FSTL5 PE=4 SV=1 CANONICAL=A0A480ZJN6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZWP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6/entry#A0A286ZWP9-1", "sequence": { "sequence": "MFKCWSAVLFLGFIFLESEGRPTKEAGYGLKSYQPLIRLRHKQEKSQESSRVKGFLIQNGPLGSCENKYCGLGRHCVLNRETGQAECACVDLCSQHYKPVCGSDGGFYENHCEVHRAACLKKRKITIVHNEDCFFQGDNCKATEYSKMKSMLLDLQNQKYITHNNENPNGDDIFRKKLLVDELFKYFDADSNGLVDINELTQVIKQEELDKDLSGCTLYDLLKYDDFNSDKHLALEEFYRTFQVIQLSLPEDQKLSITAATVGQSAVLSCAVQGALRPPIIWKRNNIILNNLELEDINDFGDDGSLYITKVTTTHMGNYTCYADGYEHIYQTHIFQVNVPPVIRVYPESQAREPGVTASLRCHAEGIPNPQLGWLKNGIDITPKLSKQLTLQANGSEVHISNVRYEDTGAYTCIAKNDAGVDEDISSLFVEDSARKTRLGIGNMFYVFYEDGIKVIQPIECEFQRHIKPSEKLLGFQDEVCPKTEGDEVQRCVWASAVNVKDKFIYAAQPTLDRVLVVDVQSQKVVQAVSTDPVPVKLHYDKSHDQVWVLSWGTMAKTSPTLQVITLASGNVPHHTIHTQPVGKQFDRVDDFFIPATTLLITHMRFGFILHKDEAALQKIDLETMSYIKTIHLKDYKCVPQSLAYTHLGGYYFIGCKPDSTGATPPQLLVDSVTDSVIGFNSDVTGTPYVSPDGHYLVSINDVKGLVRVQYITIRGEIQEAFDIHTNLHISDLAFQSSFTEAHQYNIYGSSSTQTDVLFAELASGKVKMIKSLKEPLKAEEWPWSQKNRQIQDSGLFGQYLMTPSKDSLFILDGRLNKLNCEITEVEKGNTVIWVGDA", "length": 838, "header": "tr|A0A286ZWP9-1|A0A480ZJN6_PIG Computationally mapped isoform of Follistatin-related protein 5 OS=Sus scrofa OX=9823 GN=FSTL5 PE=4 SV=1 CANONICAL=A0A480ZJN6-1" }, "locus": { "chromosome": "8", "start_pos": 51002790, "end_pos": 50266110, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055119.1", "url": "https://www.ensembl.org/id/ENSSSCT00000055119.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035935.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035935.1" } ] } }, { "isoform_ac": "A0A480ZJN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6/entry#A0A480ZJN6-1", "sequence": { "sequence": "MFKCWSAVLFLGFIFLESEGRPTKEAGYGLKSYQPLIRLRHKQEKSQESSRVKGFLIQNGPLGSCENKYCGLGRHCVLNRETGQAECACVDLCSQHYKPVCGSDGGFYENHCEVHRAACLKKRKITIVHNEDCFFQGDNCKATEYSKMKSMLLDLQNQKYITHNNENPNGDDIFRKKLLVDELFKYFDADSNGLVDINELTQVIKQEELDKDLSGCTLYDLLKYDDFNSDKHLALEEFYRTFQVIQLSLPEDQKLSITAATVGQSAVLSCAVQGALRPPIIWKRNNIILNNLELEDINDFGDDGSLYITKVTTTHMGNYTCYADGYEHIYQTHIFQVNVPPVIRVYPESQAREPGVTASLRCHAEGIPNPQLGWLKNGIDITPKLSKQLTLQANGSEVHISNVRYEDTGAYTCIAKNDAGVDEDISSLFVEDSARKTLANILWREEGLGIGNMFYVFYEDGIKVIQPIECEFQRHIKPSEKLLGFQDEVCPKTEGDEVQRCVWASAVNVKDKFIYAAQPTLDRVLVVDVQSQKVVQAVSTDPVPVKLHYDKSHDQVWVLSWGTMAKTSPTLQVITLASGNVPHHTIHTQPVGKQFDRVDDFFIPATTLLITHMRFGFILHKDEAALQKIDLETMSYIKTIHLKDYKCVPQSLAYTHLGGYYFIGCKPDSTGATPPQLLVDSVTDSVIGFNSDVTGTPYVSPDGHYLVSINDVKGLVRVQYITIRGEIQEAFDIHTNLHISDLAFQSSFTEAHQYNIYGSSSTQTDVLFAELASGKVKMIKSLKEPLKAEEWPWSQKNRQIQDSGLFGQYLMTPSKDSLFILDGRLNKLNCEITEVEKGNTVIWVGDA", "length": 847, "header": "tr|A0A480ZJN6-1|A0A480ZJN6_PIG Isoform 1 of Follistatin-related protein 5 OS=Sus scrofa OX=9823 GN=FSTL5 PE=4 SV=1 CANONICAL=A0A480ZJN6-1" }, "locus": { "chromosome": "8", "start_pos": 51002790, "end_pos": 50266110, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060854.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060854.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051250.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051250.1" } ] } }, { "isoform_ac": "I3L571-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6/entry#I3L571-1", "sequence": { "sequence": "MKKKEKVKRMFKCWSAVLFLGFIFLESEGRPTKEAGYGLKSYQPLIRLRHKQEKSQESSRVKGFLIQNGPLGSCENKYCGLGRHCVLNRETGQAECACVDLCSQHYKPVCGSDGGFYENHCEVHRAACLKKRKITIVHNEDCFFQGDNCKATEYSKMKSMLLDLQNQKYITHNNENPNGDDIFRKKLLVDELFKYFDADSNGLVDINELTQVIKQEELDKDLSGCTLYDLLKYDDFNSDKHLALEEFYRTFQVIQLSLPEDQKLSITAATVGQSAVLSCAVQGALRPPIIWKRNNIILNNLELEDINDFGDDGSLYITKVTTTHMGNYTCYADGYEHIYQTHIFQVNVPPVIRVYPESQAREPGVTASLRCHAEGIPNPQLGWLKNGIDITPKLSKQLTLQANGSEVHISNVRYEDTGAYTCIAKNDAGVDEDISSLFVEDSARKTLANILWREEGLGIGNMFYVFYEDGIKVIQPIECEFQRHIKPSEKLLGFQDEVCPKTEGDEVQRCVWASAVNVKDKFIYAAQPTLDRVLVVDVQSQKVVQAVSTDPVPVKLHYDKSHDQVWVLSWGTMAKTSPTLQVITLASGNVPHHTIHTQPVGKQFDRVDDFFIPATTLLITHMRFGFILHKDEAALQKIDLETMSYIKTIHLKDYKCVPQSLAYTHLGGYYFIGCKPDSTGATPPQLLVDSVTDSVIGFNSDVTGTPYVSPDGHYLVSINDVKGLVRVQYITIRGEIQEAFDIHTNLHISDLAFQSSFTEAHQYNIYGSSSTQTDVLFAELASGKVKMIKSLKEPLKAEEWPWSQKNRQIQDSGLFGQYLMTPSKDSLFILDGRLNKLNCEITEVEKGNTVIWVGDA", "length": 856, "header": "tr|I3L571-1|A0A480ZJN6_PIG Computationally mapped isoform of Follistatin-related protein 5 OS=Sus scrofa OX=9823 GN=FSTL5 PE=4 SV=3 CANONICAL=A0A480ZJN6-1" }, "locus": { "chromosome": "8", "start_pos": 51006450, "end_pos": 50266110, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024433.3", "url": "https://www.ensembl.org/id/ENSSSCT00000024433.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019170.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019170.3" } ] } }, { "isoform_ac": "I3L767-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6/entry#I3L767-1", "sequence": { "sequence": "MFKCWSAVLFLGFIFLESEGRPTKEAGYGLKSYQPLIRLRHKQEKSQESSRVKGFLIQNGPLGSCENKYCGLGRHCVLNRETGQAECACVDLCSQHYKPVCGSDGGFYENHCEVHRAACLKKRKITIVHNEDCFFQGDNCKATEYSKMKSMLLDLQNQKYITHNNENPNGDDIFRKKLLVDELFKYFDADSNGLVDINELTQVIKQEELDKDLSGCTLYDLLKYDDFNSDKHLALEEFYRTFQVIQLSLPEDQKLSITAATVGQSAVLSCAVQGALRPPIIWKRNNIILNNLELEDINDFGDDGSLYITKVTTTHMGNYTCYADGYEHIYQTHIFQVNVPPVIRVYPESQAREPGVTASLRCHAEGIPNPQLGWLKNGIDITPKLSKQLTLQGLGIGNMFYVFYEDGIKVIQPIECEFQRHIKPSEKLLGFQDEVCPKTEGDEVQRCVWASAVNVKDKFIYAAQPTLDRVLVVDVQSQKVVQAVSTDPVPVKLHYDKSHDQVWVLSWGTMAKTSPTLQVITLASGNVPHHTIHTQPVGKQFDRVDDFFIPATTLLITHMRFGFILHKDEAALQKIDLETMSYIKTIHLKDYKCVPQSLAYTHLGGYYFIGCKPDSTGATPPQLLVDSVTDSVIGFNSDVTGTPYVSPDGHYLVSINDVKGLVRVQYITIRGEIQEAFDIHTNLHISDLAFQSSFTEAHQYNIYGSSSTQTDVLFAELASGKVKMIKSLKEPLKAEEWPWSQKNRQIQDSGLFGQYLMTPSKDSLFILDGRLNKLNCEITEVEKGNTVIWVGDA", "length": 793, "header": "tr|I3L767-1|A0A480ZJN6_PIG Computationally mapped isoform of Follistatin-related protein 5 OS=Sus scrofa OX=9823 GN=FSTL5 PE=4 SV=3 CANONICAL=A0A480ZJN6-1" }, "locus": { "chromosome": "8", "start_pos": 51002790, "end_pos": 50266110, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022708.3", "url": "https://www.ensembl.org/id/ENSSSCT00000022708.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019871.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019871.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 673, "start_aa": "Thr", "end_pos": 673, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr673", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L571", "url": "https://www.uniprot.org/uniprotkb/I3L571" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738432", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738432", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A096MK67-1", "protein_name": "Follistatin-related protein 5", "gene_name": "Fstl5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFKCWSAVLILGFIFLASEGRPTKESGYGLKYYQPLTRLRHKQEKSQESSRIKEFLIHDGPFGSCENKYCGLGRHCVISRETRHAECTCMDLCKQHYKPVCGSDGEFYENHCEVHRAACLKKQKITIVHNEDCFFKGDNCMTTEYSKMKSMLLDLQNQKYITQENENPNSDDISRKKTLVDQMFKYFDADSNGLVDINELTQVIKQEELNKDLSDCTLYDLLKYDDFNADKHLALEEFYRAFQVIQLSLPEDQRVSITAATVGQSAVLSCAVVGTLRPPIIWKRNNIVLNNLDLEDINDFGDDGSLYITKVTTVHMGNYTCYADGYEDVHQTHIFQVNVPPVIRVYPESQAREPGVTASLRCHAEGIPDPQLGWLKNGIDITPKLSKQLTLQANGSEVHISNVRYEDTGAYTCIARNEAGVDEDISSLFVEDSARKTLANILWREEGLGIGNMFYVFYDDGVKVIQPTECEFQRHIKPSEKLLGFQDEVCPKDEEDEVQRCVWASAVNVKDKFIYVAQPTLDRILIVDVQSQKVVQAVSTDPVPVKLHYDKSHDQVWVLSWGSMEKTSPTLQVITLASGNVPHHTIHTQPVGKQFDRVDDFFIPTPTLIITHMRFGFILHKDESALHKIDLETMSYIKTISLKDSKCIPLSLAYSHLGGYYFISCKPDITGAIPPQLVVDSVTDSIIGSNSDVTGTPYVSPDGHYLVSVNDVKGLVRVQYITIRGEILDAFDIHTNLHISDLAFQPSFTEAHQYNIYGSSSQQTDVLFVELSTGKVKMIKSLKEPLKTEDWPWSPKNRHIQGSGLFGQYLMTPSKDSLFILDGRLNKLNCEITEVQKGNTVVWVGDA", "length": 847 }, "evidence": [ { "id": "A0A480ZJN6", "url": "https://omabrowser.org/oma/group/A0A480ZJN6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A1D5PJN7-1", "protein_name": "Follistatin-related protein 5", "gene_name": "FSTL5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MFMWWSAVLLLGWILFGADGWPAKEGYDFMPYQPLIRLRHKQEKNQESSRSKGYMDQDGHFKSCENKYCGLGRHCVMNGESGQAECVCMERCKPHYKPVCGSDGEFYENHCEVHRAACLKKQKVAIVHNEDCFFKGDKCKPTEYSKVKNMLLDLQNQRYAAQSKNRNVGEKMALRKLLVDQMFHYFDSDSNGLVDTNELSQVIKRDELGKDLSDCSLFDLLKYDDYNSDKHLGLEEFYRAFQIVQLSLPDDQKLSTTAATVGQSAVLSCAIQGALRPPIIWRRNNVILNNLDLEDINDFGDDGSLYITKVTTTHMGNYTCYADGYDKLYQTHILEVNVPPVIRVYPESQAREPGVTASLRCHAEGIPNPQLGWLKNGIDITPKLSKQLTLQANGSEVHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVEDSARKTLANILWREQGLGIGNMFYVFYEDGIKVIQPVECEFQRHIKPSEKLLGFQDEVCPKTDGDSVQRCVWATAVNVKDKFIYVTQPTLDRVLIVDVQSQKVVQAVSTDPVPVKLHYDKSHDQVWVQSWGNMEKNSPTLQVITQASGSISHHTIHTQPVGKQFDRVDDFFIPATTLIITHIRFGFILHKDEPVLQKIDLETMSYIKTISLKDYNCIPQSLAYTHLGGFFFIYCKPDTTGAVLPQLIVDSVTDSVIGYNGDVTGRPHVSPDGHYLVSIDDAKGLMRIQTITMRGEILDAFDIHTNLHISDVAFQPSFTEAHQYNIYCSSSTQTDVLFVELSSGKVKMVKSLKEPVRAGEWPWNSKNRLIKDSGLFGQYLMTPSKESLFILDGRLNKLNCEITEVERGNTVIWVGEA", "length": 846 }, "evidence": [ { "id": "A0A480ZJN6", "url": "https://omabrowser.org/oma/group/A0A480ZJN6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3N1L7-1", "protein_name": "Follistatin-related protein 5", "gene_name": "FSTL5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLKCWSAVLILGFIFLESEGRPTKEAGYGLKSYQPLIRLRHKQEKSQERSRIKGILIQDGSLGSCENKYCGLGRHCVLSRETGQAECACMDHCNRHYKPVCGSDGEFYENHCEVHRAACLKKHKITIVHNEDCFFKGDNCKAIEYSKMKSMLLDLQNQKYITQDNENPNGDDVFRKKLLVDQMFKYFDADSNGLVDINELIQVIKQEELGKDLSDCTLYDLLKYDDFNSDKHLALEEFYRTFQVIQLSLPEDQKLSVTAATVGQSTVLSCAIQGALRPPIIWKRNNIILNNLDLEDINDFGDDGSLYITKVTTTHMGNYTCYAEGYENIYQTHIFQVNVPPVIRVYPESQAREPGVTASLRCHAEGIPNPQLSWLKNGIDITPKLSKQLTLQANGSEVHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVEDSARKTLANILWREEGLGIGNMFYVFYEDGIKVIQPIECEFQRHIKPSEKLLGFQDEVCPKAEGDEIQRCVWASAVNVKDKFIYVAQPTLDRVLVVDVQSQKVVQAVSTDPVPVKLHYDKSHDQVWVLSWGTMEKTSPTLQVITLASGNVPHHTIHTQPVGKQFDRVDDFFIPTTTLLITHIRFGFILHKDEAALQKIDLETMSYIKTINLKDYQCIPQSLAYTHLGGYYFIGCKPDSTGAAPPQLLVDGVTDSVIGFNSDVTGTPYVSPDGHYLVTISDVKGLVRVQYITIRGEIQEAFDIHTNLHISDLAFQPSFTEAHQYNIYGSSSTQTDVLFVELASGKVKMIKSLKEPLKAEEWPWNLKNRQIQDSGLFGQYLMTPSKDSLFILDGRLNKLNCEITEVEKGNTVIWVGEA", "length": 847 }, "evidence": [ { "id": "A0A480ZJN6", "url": "https://omabrowser.org/oma/group/A0A480ZJN6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BFR2-1", "protein_name": "Follistatin-related protein 5", "gene_name": "Fstl5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFRCWSAILILGFIFLASEGRPTKESGYGLKSYQPLTRLRHKQEKSQESSRIKEFLIHDGPFGSCENKYCGLGRHCVINRETRHAECACMDLCKQHYKPVCGSDGEFYENHCEVHRAACLKKQKITIVHNEDCFFEGDNCMAIEYSKMKSMLLDLQNQKYITQENENPNSDDISRKKPLVDQMFKYFDADSNGLVDINELTQVIKQEELNKDLSDCTLYDLLKYDDFNADKHLALEEFYRAFQVIQLSLPEDQRVSITAATVGQSAVLSCAIVGTLRPPIIWKRNNIVLNNLDLEDINDFGDDGSLYITKVTTVHMGNYTCYADGYENVRQTHIFQVNVPPVIRVYPESQAREPGVTASLRCHAEGIPDPQLGWLKNGIDITPKLSKQLTLQANGSEVHISNVRYEDTGAYTCIARNEAGVDEDISSLFVEDSARKTLANILWREEGLGIGNMFYVFYEDGIKVIQPTECEFQRHIKPSEKLLGYQDEVCPKAEEDEVQRCVWASAVNVKDKFIYVAQPTLDRILIVDVQSQKVVQAVSTDPVPVKLHYDKSHDQVWVLSWGSMEKTSPTLQVITLASGNVPHHTIHTQPVGKQFDRVDDFFIPTPTLIITHMRFGFILHKDESALHKIDLETMSYIKTINLKDSRCIPLSLAYTHLGGYYFISCKADITGATPPQLVVDSVTDSIIGFNSDVTGTPYVSPDGHYLVSVNDVKGLVRVQYITIRGEILDAFDIHTNLHISDLAFQPSFTEAHQYNIYGSSSQQTDVLFVELSSGKVKMIKSLKEPLKTEDWPWSQKNRHIQGSGLFGQYLMTPSKDSLFILDGRLNKLNCEITEVQKGNTVVWVGDA", "length": 847 }, "evidence": [ { "id": "A0A480ZJN6", "url": "https://omabrowser.org/oma/group/A0A480ZJN6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N475-1", "protein_name": "Follistatin-related protein 5", "gene_name": "FSTL5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFKCWSVVLVLGFIFLESEGRPTKEGGYGLKSYQPLMRLRHKQEKNQESSRVKGFMIQDGPFGSCENKYCGLGRHCVTSRETGQAECACMDLCKRHYKPVCGSDGEFYENHCEVHRAACLKKQKITIVHNEDCFFKGDKCKTTEYSKMKNMLLDLQNQKYIMQENENPNGDDISRKKLLVDQMFKYFDADSNGLVDINELTQVIKQEELGKDLFDCTLYVLLKYDDFNADKHLALEEFYRAFQVIQLSLPEDQKLSITAATVGQSAVLSCAIQGTLRPPIIWKRNNIILNNLDLEDINDFGDDGSLYITKVTTTHVGNYTCYADGYEQVYQTHIFQVNVPPVIRVYPESQAREPGVTASLRCHAEGIPKPQLGWLKNGIDITPKLSKQLTLQANGSEVHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVEDSARKTLANILWREEGLGIGNMFYVFYEDGIKVIQPIECEFQRHIKPSEKLLGFQDEVCPKAEGDEVQRCVWASAVNVKDKFIYVAQPTLDRVLIVDVQSQKVVQAVSTDPVPVKLHYDKSHDQVWVLSWGTLEKTSPTLQVITLASGNVPHHTIHTQPVGKQFDRVDDFFIPTTTLIITHMRFGFILHKDEAALQKIDLETMSYIKTINLKDYKCVPQSLAYTHLGGYYFIGCKPDSTGAVSPQVMVDGVTDSVIGFNSDVTGTPYVSPDGHYLVSINDVKGLVRVQYITIRGEIQEAFDIYTNLHISDLAFQPSFTEAHQYNIYGSSSTQTDVLFVELSSGKVKMIKSLKEPLKAEEWPWNRKNRQIQDSGLFGQYLMTPSKDSLFILDGRLNKLNCEITEVEKGNTVIWVGDA", "length": 847 }, "evidence": [ { "id": "A0A480ZJN6", "url": "https://omabrowser.org/oma/group/A0A480ZJN6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZJN6", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZJN6", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZJN6", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6" } ], "pmid": "" }, { "name": "regulation of BMP signaling pathway", "id": "GO:0030510", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030510", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZJN6", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 318, "end_pos": 320, "annotation": "n_glycosylation_sequon" }, { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480ZJN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 175, "end_pos": 210, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A480ZJN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 250, "end_pos": 323, "start_aa": "Pro", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A480ZJN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480ZJN6" }, { "id": "PS51465", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51465" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Kazal-like", "eco_id": "ECO_0000259", "start_pos": 88, "end_pos": 135, "start_aa": "Ala", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 673 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 318, "end_pos": 320 }, { "start_pos": 394, "end_pos": 396 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480SZL1-1", "uniprot_ac": "A0A480SZL1", "uniprot_id": "A0A480SZL1_PIG", "mass": { "chemical_mass": 19915.0, "monoisotopic_mass": 19915.0 }, "refseq": { "ac": "XP_003131983", "name": "chromatin complexes subunit BAP18 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131983" }, "gene_names": [ { "name": "BACC1", "type": "recommended", "evidence": [ { "id": "A0A480SZL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1" } ] }, { "name": "C12H17orf49", "type": "recommended", "evidence": [ { "id": "A0A480SZL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1" } ] }, { "name": "BACC1", "type": "synonym", "evidence": [ { "id": "A0A480SZL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1" } ] }, { "name": "C12H17orf49", "type": "synonym", "evidence": [ { "id": "XP_003131983", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131983" } ] } ], "protein_names": [ { "name": "BPTF-associated chromatin complex component 1", "type": "recommended", "evidence": [ { "id": "A0A480SZL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1/entry#names_and_taxonomy" } ] }, { "name": "BPTF-associated protein of 18 kDa", "type": "synonym", "evidence": [ { "id": "A0A480SZL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1/entry#names_and_taxonomy" } ] }, { "name": "chromatin complexes subunit BAP18 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003131983", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131983" } ] } ], "function": [ { "annotation": "Component of chromatin complexes such as the MLL1/MLL and NURF complexes.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZYN4", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYN4#function" }, { "database": "UniProtKB", "id": "ARBA00059556", "url": "https://www.uniprot.org/uniprotkb/ARBA00059556#function" }, { "database": "UniProtKB", "id": "A0A480SZL1", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480SZL1", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BACC1", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000017928", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017928", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00167", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00167", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518689", "url": "https://www.ncbi.nlm.nih.gov/gene/100518689", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518689", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518689", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A480SZL1", "url": "https://www.orthodb.org/?gene=A0A480SZL1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21397", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21397", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21397:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21397:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27797", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27797", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003131983", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131983", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZYN4", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZYN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYN4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480SZL1", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480SZL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD85-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD85-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSASTKVGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCVIKERTVAQIKATVKRKVYEDSGIPLPADSPKKGPKKVASGVLSPPPAAPPPSSSSAPEAGGPPLKKQKADVTLSALNDSDANSDLVDIEGLGETPPAKKLNFDQDSLTLDSGLLLTSADPPLLSC", "length": 192, "header": "tr|A0A480SZL1-1|A0A480SZL1_PIG Isoform 1 of BPTF-associated chromatin complex component 1 OS=Sus scrofa OX=9823 GN=BACC1 PE=1 SV=1 CANONICAL=A0A480SZL1-1" }, "isoforms": [ { "isoform_ac": "A0A286ZYN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1/entry#A0A286ZYN4-1", "sequence": { "sequence": "MTSASTKVGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCVIKERTVAQIKATVKRKVYEDSGIPLPADSPKKGPKKVASGVLSPPPAAPPPSSSSAPEAGGPPLKKQKADSLTLDSGLLLTSADPPLLSC", "length": 157, "header": "tr|A0A286ZYN4-1|A0A480SZL1_PIG Computationally mapped isoform of BPTF-associated chromatin complex component 1 OS=Sus scrofa OX=9823 GN=BACC1 PE=1 SV=3 CANONICAL=A0A480SZL1-1" }, "locus": { "chromosome": "12", "start_pos": 52421732, "end_pos": 52419203, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064893.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064893.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036617.3", "url": "https://www.ensembl.org/id/ENSSSCP00000036617.3" } ] } }, { "isoform_ac": "A0A480SZL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1/entry#A0A480SZL1-1", "sequence": { "sequence": "MTSASTKVGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCVIKERTVAQIKATVKRKVYEDSGIPLPADSPKKGPKKVASGVLSPPPAAPPPSSSSAPEAGGPPLKKQKADVTLSALNDSDANSDLVDIEGLGETPPAKKLNFDQDSLTLDSGLLLTSADPPLLSC", "length": 192, "header": "tr|A0A480SZL1-1|A0A480SZL1_PIG Isoform 1 of BPTF-associated chromatin complex component 1 OS=Sus scrofa OX=9823 GN=BACC1 PE=1 SV=1 CANONICAL=A0A480SZL1-1" }, "locus": { "chromosome": "12", "start_pos": 52421732, "end_pos": 52419203, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019511.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019511.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018993.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018993.4" } ] } }, { "isoform_ac": "A0A5G2QD85-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1/entry#A0A5G2QD85-1", "sequence": { "sequence": "MTSASTKVGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAQIKATVKRKVYEDSGIPLPADSPKKGPKKVASGVLSPPPAAPPPSSSSAPEAGGPPLKKQKADVTLSALNDSDANSDLVDIEGLGETPPAKKLNFDQGRSLPPPTAAEGAPPPPHPRAPLC", "length": 161, "header": "tr|A0A5G2QD85-1|A0A480SZL1_PIG Computationally mapped isoform of BPTF-associated chromatin complex component 1 OS=Sus scrofa OX=9823 GN=BACC1 PE=1 SV=1 CANONICAL=A0A480SZL1-1" }, "locus": { "chromosome": "12", "start_pos": 52421485, "end_pos": 52419203, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083813.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083813.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060010.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060010.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD85" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518689", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518689", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A480SZL1", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A480SZL1", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480SZL1", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1" } ], "pmid": "" }, { "name": "MLL1 complex", "id": "GO:0071339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071339", "evidence": [ { "database": "UniProtKB", "id": "A0A480SZL1", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1" } ], "pmid": "" }, { "name": "NURF complex", "id": "GO:0016589", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016589", "evidence": [ { "database": "UniProtKB", "id": "A0A480SZL1", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "A0A480SZL1", "url": "https://www.uniprot.org/uniprotkb/A0A480SZL1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 144, "end_pos": 146 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480P307-1", "uniprot_ac": "A0A480P307", "uniprot_id": "A0A480P307_PIG", "mass": { "chemical_mass": 51987.0, "monoisotopic_mass": 51987.0 }, "refseq": { "ac": "XP_020936519", "name": "serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936519" }, "gene_names": [ { "name": "PPP2R2B", "type": "recommended", "evidence": [ { "id": "A0A480P307", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480P307" } ] }, { "name": "PPP2R2B", "type": "synonym", "evidence": [ { "id": "XP_020936519", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936519" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B", "type": "recommended", "evidence": [ { "id": "A0A480P307", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480P307/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X7", "type": "synonym", "evidence": [ { "id": "XP_020936519", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936519" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480P307", "url": "https://www.uniprot.org/uniprotkb/A0A480P307" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPP2R2B", "url": "https://www.uniprot.org/uniprotkb/A0A480P307", "locus": { "chromosome": "2", "start_pos": 147937442, "end_pos": 148411731, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028976", "url": "https://www.ensembl.org/id/ENSSSCG00000028976" } ] } } ], "crossref": [ { "id": "ENSSSCG00000028976", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028976", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "397089", "url": "https://www.ncbi.nlm.nih.gov/gene/397089", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018067", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018067", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KWCRRTN", "url": "https://omabrowser.org/oma/group/KWCRRTN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11871", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11871", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020936519", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936519", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZZX7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZZX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZX7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHM5", "url": "https://www.uniprot.org/uniprotkb/A0A287BHM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHM5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480P307", "url": "https://www.uniprot.org/uniprotkb/A0A480P307", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480P307-1", "url": "https://www.uniprot.org/uniprotkb/A0A480P307-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480Y8W8", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8W8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480Y8W8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8W8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LCY8", "url": "https://www.uniprot.org/uniprotkb/I3LCY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LCY8-1", "url": "https://www.uniprot.org/uniprotkb/I3LCY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKCFSRYLPYIFRPPNTILSSSCHTEADIISAVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATITTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN", "length": 446, "header": "tr|A0A480P307-1|A0A480P307_PIG Isoform 1 of Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Sus scrofa OX=9823 GN=PPP2R2B PE=3 SV=1 CANONICAL=A0A480P307-1" }, "isoforms": [ { "isoform_ac": "A0A286ZZX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480P307/entry#A0A286ZZX7-1", "sequence": { "sequence": "MLLSLPALHLQTSEYHPLFQLPHGRLGPWCSPTGSPAPLSCDTGCGEGSWILVCRLLVPTQVSLLSMEEDIDTRKINNSFLRDHSYATEADIISAVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATITTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN", "length": 509, "header": "tr|A0A286ZZX7-1|A0A480P307_PIG Computationally mapped isoform of Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Sus scrofa OX=9823 GN=PPP2R2B PE=3 SV=2 CANONICAL=A0A480P307-1" }, "locus": { "chromosome": "2", "start_pos": 148374449, "end_pos": 147938530, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040302.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040302.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037190.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037190.2" } ] } }, { "isoform_ac": "A0A287BHM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480P307/entry#A0A287BHM5-1", "sequence": { "sequence": "MVLQPSERHYRDWSHGRLGPWCSPTGSPAPLSCDTGCGEGSWILVCRLLVPTQVSLLSMEEDIDTRKINNSFLRDHSYATEADIISAVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATITTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDSGTSVFKNKPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN", "length": 502, "header": "tr|A0A287BHM5-1|A0A480P307_PIG Computationally mapped isoform of Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Sus scrofa OX=9823 GN=PPP2R2B PE=3 SV=3 CANONICAL=A0A480P307-1" }, "locus": { "chromosome": "2", "start_pos": 148411520, "end_pos": 147938530, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062323.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062323.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056092.3", "url": "https://www.ensembl.org/id/ENSSSCP00000056092.3" } ] } }, { "isoform_ac": "A0A480P307-1", "url": "https://www.uniprot.org/uniprotkb/A0A480P307/entry#A0A480P307-1", "sequence": { "sequence": "MKCFSRYLPYIFRPPNTILSSSCHTEADIISAVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATITTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN", "length": 446, "header": "tr|A0A480P307-1|A0A480P307_PIG Isoform 1 of Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Sus scrofa OX=9823 GN=PPP2R2B PE=3 SV=1 CANONICAL=A0A480P307-1" }, "locus": { "chromosome": "2", "start_pos": 148374454, "end_pos": 147938530, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057962.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057962.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036687.2", "url": "https://www.ensembl.org/id/ENSSSCP00000036687.2" } ] } }, { "isoform_ac": "A0A480Y8W8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480P307/entry#A0A480Y8W8-1", "sequence": { "sequence": "MIPGVGVLTQDTLWCFSQVKGTIEIGATEADIISAVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATITTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN", "length": 449, "header": "tr|A0A480Y8W8-1|A0A480Y8W8_PIG Computationally mapped isoform of Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Sus scrofa OX=9823 GN=PPP2R2B PE=3 SV=1 CANONICAL=A0A480P307-1" }, "locus": { "chromosome": "2", "start_pos": 148411674, "end_pos": 147938530, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069900.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069900.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068705.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068705.1" } ] } }, { "isoform_ac": "I3LCY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480P307/entry#I3LCY8-1", "sequence": { "sequence": "MNYPDESTYGNKADIISAVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATITTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN", "length": 432, "header": "tr|I3LCY8-1|A0A480P307_PIG Computationally mapped isoform of Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Sus scrofa OX=9823 GN=PPP2R2B PE=3 SV=3 CANONICAL=A0A480P307-1" }, "locus": { "chromosome": "2", "start_pos": 148209891, "end_pos": 147938530, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080420.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080420.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069410.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069410.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LCY8", "url": "https://www.uniprot.org/uniprotkb/I3LCY8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PC44-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B", "gene_name": "PPP2R2B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEEDVETRKINSSFLRDHSYATEADIISTVEFNHTGELLATGDKGGRVVIFQREQESKNQPHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEDGRLRDPSMITSLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRTSALCDRHAKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAVLKPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN", "length": 443 }, "evidence": [ { "id": "A0A480P307", "url": "https://omabrowser.org/oma/group/A0A480P307/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P36877-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform", "gene_name": "Ppp2r2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEEDIDTRKINNSFLRDHSYATEADIISTVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATITTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTAKVWDLNMENRPVETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN", "length": 443 }, "evidence": [ { "id": "A0A480P307", "url": "https://omabrowser.org/oma/group/A0A480P307/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q00005-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform", "gene_name": "PPP2R2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDIDTRKINNSFLRDHSYATEADIISTVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATITTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN", "length": 443 }, "evidence": [ { "id": "A0A480P307", "url": "https://omabrowser.org/oma/group/A0A480P307/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q39247-1", "protein_name": "Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform", "gene_name": "PP2AB2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNGGDDAATSGPPPSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRKDLEQTDYPVRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFPPGGIPSLRLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEAATLEASKNPMRRQIQTPARPSRSIGSMTRVVRRGSESPGTEANGNAYDFTTKLLHMAWHPTENSIACAAANSLYMYYA", "length": 501 }, "evidence": [ { "id": "A0A480P307", "url": "https://omabrowser.org/oma/group/A0A480P307/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5E9Q7-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform", "gene_name": "PPP2R2B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEEDIDTRKINNSFLRDHSYATEADIISTVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATITTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN", "length": 443 }, "evidence": [ { "id": "A0A480P307", "url": "https://omabrowser.org/oma/group/A0A480P307/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6ZWR4-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform", "gene_name": "Ppp2r2b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEDIDTRKINNSFLRDHSYATEADIISTVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATITTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN", "length": 443 }, "evidence": [ { "id": "A0A480P307", "url": "https://omabrowser.org/oma/group/A0A480P307/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A480P307", "url": "https://www.uniprot.org/uniprotkb/A0A480P307" } ], "pmid": "" }, { "name": "protein phosphatase type 2A 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"categories": [ "Protein" ] }, { "id": "A0A480STD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480STD3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEYFTGATFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHEQSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIYIVDGDGGLNNRLIKLSQDFMILWLRGENGTEPAKFNIPHSVTVDSVGRVWVADRGNRRIQVFDKDTGEWLGAWNDCFTEEGPSAVRFTPDGKRLIIAQLNLSRLLITAAPPVGNIGNCSVISTIQLADQVLPHLLDVSQKTGAIYVAEIGAKQVQKYVPVNSYFSSFSS", "length": 349, "header": "tr|A0A480STD3-1|A0A480STD3_PIG Isoform 1 of NHL repeat-containing protein 3 OS=Sus scrofa OX=9823 GN=NHLRC3 PE=4 SV=1 CANONICAL=A0A480STD3-1" }, "isoforms": [ { "isoform_ac": "A0A287A1H7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480STD3/entry#A0A287A1H7-1", "sequence": { "sequence": "MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEYFTGATFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHEQSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIYIVDGDGGLNNRLIKLSQDFMILWLRGENGTEPAKFNIPHSVTVDSVGRVWVADRGNRRIQVFDKDTGEWLGAWNDCFTEEGPSAVRFTPDGKRLIIAQLNLSRLLITAAPPVGNIGNCSVISTIQLADQVLPHLLDVSQKTGAIYVAEIGAKINLIFKKEDTSRID", "length": 346, "header": "tr|A0A287A1H7-1|A0A480STD3_PIG Computationally mapped isoform of NHL repeat-containing protein 3 OS=Sus scrofa OX=9823 GN=NHLRC3 PE=4 SV=1 CANONICAL=A0A480STD3-1" }, "locus": { "chromosome": "11", "start_pos": 14209123, "end_pos": 14184372, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043055.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043055.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037577.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037577.1" } ] } }, { "isoform_ac": "A0A480STD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480STD3/entry#A0A480STD3-1", "sequence": { "sequence": "MARFWVCVAGAGFFLAYLVLHSHICGSSLPLRLHFAFKFSWRAEEILYRLDVDWPTYSEYFTGATFCVAVDSLNELVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGIFAASTLHEQSVWITDVGSGSYGHTVKKYNSFGDLVQILGTPGKKGTGLNPLQFDNPAELFVEDTGDIYIVDGDGGLNNRLIKLSQDFMILWLRGENGTEPAKFNIPHSVTVDSVGRVWVADRGNRRIQVFDKDTGEWLGAWNDCFTEEGPSAVRFTPDGKRLIIAQLNLSRLLITAAPPVGNIGNCSVISTIQLADQVLPHLLDVSQKTGAIYVAEIGAKQVQKYVPVNSYFSSFSS", "length": 349, "header": "tr|A0A480STD3-1|A0A480STD3_PIG Isoform 1 of NHL repeat-containing protein 3 OS=Sus scrofa OX=9823 GN=NHLRC3 PE=4 SV=1 CANONICAL=A0A480STD3-1" }, "locus": { "chromosome": "11", "start_pos": 14191669, "end_pos": 14184372, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060985.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060985.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043276.3", "url": "https://www.ensembl.org/id/ENSSSCP00000043276.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1H7", "url": "https://www.uniprot.org/uniprotkb/A0A287A1H7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HVP7-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "Nhlrc3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARVWVCVGGAVFLLSCLVLHSCYSGSLVSRTFAFYIPWRKEDTLFRLDLGWPKYSEYFTGSTFSVAVDSLNGLVYVAQRGDNIPKVLVFTEDGYFLRAWNYTVDTPHGMFVSGTPYEQSVWITDVGSGAYGHTVKKYNSLGDLVQVLGTPGKKGTGLNPLQFDNPAELYVDDTGEIYIVDGDGGLNNRLVKLSQDFLILWLHGENGTGPGKFNIPHGVTLDSVGRVWVADRGNKRLQVFDKDTGEWLGAWDNCFTEEGPSAVRFTPDGKYLIVAQLNLSRLSILVAPPSGSIGDCSVVSTIQLADQVLPHLLEVDKKTGAVYVAEIGAKQVQKYVPWHSHAPAFGA", "length": 347 }, "evidence": [ { "id": "A0A480STD3", "url": "https://omabrowser.org/oma/group/A0A480STD3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5JS37-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "NHLRC3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARFWVCVAGAGFFLAFLVLHSRFCGSPVLRNFTFAVSWRTEKILYRLDVGWPKHPEYFTGTTFCVAVDSLNGLVYIGQRGDNIPKILVFTEDGYFLRAWNYTVDTPHGIFAASTLYEQSVWITDVGSGFFGHTVKKYSSFGDLVQVLGTPGKKGTSLNPLQFDNPAELYVEDTGDIYIVDGDGGLNNRLIKLSQDFMILWLHGENGTGPAKFNIPHSVTLDSAGRVWVADRGNKRIQVFDKDTGEWLGAWNNCFTEEGPSSVRFTPDGKYLIVAQLNLSRLSVVAAPPVGSIGECSVISTIQLADQVLPHLLEVDRKTGAVYVAEIGAKQVQKYVPLNSYVPSFGS", "length": 347 }, "evidence": [ { "id": "A0A480STD3", "url": "https://omabrowser.org/oma/group/A0A480STD3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CCH2-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "Nhlrc3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARAWVCLAGAAFFLSCLVLHSRFCGSLVSRTFSFHVSWRMEDPLFRLDLGWPKNSEYFTGATFCVAVDSLNGLVYVAQRGDNIPKVLVFSEDGYFLRAWNYTVDTPHGMFVSGTPFEQSVWITDVGSGPYGHTVKKYNSLGDLVQVLGTPGKKGTGLNPLQFDNPAELYVDDTGEMYIVDGDGGLNNRLVKLSQDFMILWLRGENGTGPAKFNIPHSVTLDAVGRVWVADRGNKRLQVFDKDTGEWLGAWDNCFTEEGPSAVRFTPDGKYLIVAQLNLSRLSVLLAPPSGSIGDCSVVSTIQLADQVLPHLLEVDRKTGAVYVAEIGAKQIQKYIPWHSRTPAFGA", "length": 347 }, "evidence": [ { "id": "A0A480STD3", "url": "https://omabrowser.org/oma/group/A0A480STD3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "A0A480STD3", "url": "https://www.uniprot.org/uniprotkb/A0A480STD3" } ], "pmid": "" }, { "name": "protein polyubiquitination", "id": "GO:0000209", "url": 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{ "database": "UniProtKB", "id": "A0A480USH1", "url": "https://www.uniprot.org/uniprotkb/A0A480USH1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KLF12", "url": "https://www.uniprot.org/uniprotkb/A0A480USH1", "locus": { "chromosome": "11", "start_pos": 45985564, "end_pos": 46459791, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025130", "url": "https://www.ensembl.org/id/ENSSSCG00000025130" } ] } } ], "crossref": [ { "id": "ENSSSCG00000025130", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025130", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21441", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21441", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100174955", "url": "https://www.ncbi.nlm.nih.gov/gene/100174955", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A480USH1", "url": "https://www.orthodb.org/?gene=A0A480USH1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235:SF56", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235:SF56", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020920772", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920772", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A221", "url": "https://www.uniprot.org/uniprotkb/A0A287A221", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A221-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A221-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2Z7", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Z7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2Z7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Z7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480USH1", "url": "https://www.uniprot.org/uniprotkb/A0A480USH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480USH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480USH1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMU4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMU4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LN86", "url": "https://www.uniprot.org/uniprotkb/I3LN86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LN86-1", "url": "https://www.uniprot.org/uniprotkb/I3LN86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIHMKRKTIKNIDTFENRMLMLDGMPAVRVKTELLESEQGSPNVHNYPDMEAVPLLLNNVKGEPPEDSLSVDHFQTQTEPVDLSINKARTSPTAVSSSPVSMTASASSPSSTSTSSSSSSRPASSPTVITSVSSASSSSTVLTPGPLVASASGVGGQQFLHIIHPVPPSSPMNLQSNKLSHVHRIPVVVQSVPVVYTAVRSPGNVNNTIVVPLLEDGRSHGKAQMDPRGLSPRQSKSDSDDDDLPNVTLDSVNETGSTALSIARAVQEVHPSPVSRVRGNRMNNQKFACSISPFSIESTRRQRRSESPDSRKRRIHRCDFEGCNKVYTKSSHLKAHRRTHTGEKPYKCTWEGCTWKFARSDELTRHYRKHTGVKPFKCADCDRSFSRSDHLALHRRRHMLV", "length": 402, "header": "tr|A0A480USH1-1|A0A480USH1_PIG Isoform 1 of KLF transcription factor 12 OS=Sus scrofa OX=9823 GN=KLF12 PE=4 SV=1 CANONICAL=A0A480USH1-1" }, "isoforms": [ { "isoform_ac": "A0A287A221-1", "url": "https://www.uniprot.org/uniprotkb/A0A480USH1/entry#A0A287A221-1", "sequence": { "sequence": "MNIHMKRKTIKNIDTFENRMLMLDGMPAVRVKTELLESEQGSPNVHNYPDMEAVPLLLNNVKGEPPEDSLSVDHFQTQTEPVDLSINKARTSPTAVSSSPVSMTASASSPSSTSTSSSSSSRPASSPTVITSVSSASSSSTVLTPGPLVASASGVGGQQFLHIIHPVPPSSPMNLQSNKLSHVHRIPVVVQSVPVVYTAVRSPGNVNNTIVVPLLEDGRSHGKAQMDPRGLSPRQSKSDSDDDDLPNVTLDSVNETGSTALSIARAVQDSISPFSIESTRRQRRSESPDSRKRRIHRCDFEGCNKVYTKSSHLKAHRRTHTGEKPYKCTWEGCTWKFARSDELTRHYRKHTGVKPFKCADCDRSFSRSDHLALHRRRHMLV", "length": 381, "header": "tr|A0A287A221-1|A0A480USH1_PIG Computationally mapped isoform of KLF transcription factor 12 OS=Sus scrofa OX=9823 GN=KLF12 PE=4 SV=1 CANONICAL=A0A480USH1-1" }, "locus": { "chromosome": "11", "start_pos": 46308237, "end_pos": 45990719, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055878.2", "url": "https://www.ensembl.org/id/ENSSSCT00000055878.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054109.1", "url": "https://www.ensembl.org/id/ENSSSCP00000054109.1" } ] } }, { "isoform_ac": "A0A287A2Z7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480USH1/entry#A0A287A2Z7-1", "sequence": { "sequence": "MVFSNTDLLSLVCCRRIFWDQCDSGNKWMNEYPYEEENNKENRMLMLDGMPAVRVKTELLESEQGSPNVHNYPDMEAVPLLLNNVKGEPPEDSLSVDHFQTQTEPVDLSINKARTSPTAVSSSPVSMTASASSPSSTSTSSSSSSRPASSPTVITSVSSASSSSTVLTPGPLVASASGVGGQQFLHIIHPVPPSSPMNLQSNKLSHVHRIPVVVQSVPVVYTAVRSPGNVNNTIVVPLLEDGRSHGKAQMDPRGLSPRQSKSDSDDDDLPNVTLDSVNETGSTALSIARAVQEVHPSPVSRVRGNRMNNQKFACSISPFSIESTRRQRRSESPDSRKRRIHRCDFEGCNKVYTKSSHLKAHRRTHTGTALLEGQRESRKGPRLDFCWRVLCSPIVHASWFSSFLNGEVPLSVEKGVSLGEV", "length": 421, "header": "tr|A0A287A2Z7-1|A0A480USH1_PIG Computationally mapped isoform of KLF transcription factor 12 OS=Sus scrofa OX=9823 GN=KLF12 PE=4 SV=2 CANONICAL=A0A480USH1-1" }, "locus": { "chromosome": "11", "start_pos": 46446134, "end_pos": 46012416, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040861.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040861.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038093.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038093.3" } ] } }, { "isoform_ac": "A0A480USH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480USH1/entry#A0A480USH1-1", "sequence": { "sequence": "MNIHMKRKTIKNIDTFENRMLMLDGMPAVRVKTELLESEQGSPNVHNYPDMEAVPLLLNNVKGEPPEDSLSVDHFQTQTEPVDLSINKARTSPTAVSSSPVSMTASASSPSSTSTSSSSSSRPASSPTVITSVSSASSSSTVLTPGPLVASASGVGGQQFLHIIHPVPPSSPMNLQSNKLSHVHRIPVVVQSVPVVYTAVRSPGNVNNTIVVPLLEDGRSHGKAQMDPRGLSPRQSKSDSDDDDLPNVTLDSVNETGSTALSIARAVQEVHPSPVSRVRGNRMNNQKFACSISPFSIESTRRQRRSESPDSRKRRIHRCDFEGCNKVYTKSSHLKAHRRTHTGEKPYKCTWEGCTWKFARSDELTRHYRKHTGVKPFKCADCDRSFSRSDHLALHRRRHMLV", "length": 402, "header": "tr|A0A480USH1-1|A0A480USH1_PIG Isoform 1 of KLF transcription factor 12 OS=Sus scrofa OX=9823 GN=KLF12 PE=4 SV=1 CANONICAL=A0A480USH1-1" }, "locus": { "chromosome": "11", "start_pos": 46308237, "end_pos": 45990719, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043538.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043538.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050435.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050435.2" } ] } }, { "isoform_ac": "A0A8W4FMU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480USH1/entry#A0A8W4FMU4-1", "sequence": { "sequence": "MQNIDTFENRMLMLDGMPAVRVKTELLESEQGSPNVHNYPDMEAVPLLLNNVKGEPPEDSLSVDHFQTQTEPVDLSINKARTSPTAVSSSPVSMTASASSPSSTSTSSSSSSRPASSPTVITSVSSASSSSTVLTPGPLVASASGVGGQQFLHIIHPVPPSSPMNLQSNKLSHVHRIPVVVQSVPVVYTAVRSPGNVNNTIVVPLLEDGRSHGKAQMDPRGLSPRQSKSDSDDDDLPNVTLDSVNETGSTALSIARAVQEVHPSPVSRVRGNRMNNQKFACSISPFSIESTRRQRRSESPDSRKRRIHRCDFEGCNKVYTKSSHLKAHRRTHTGEKPYKCTWEGCTWKFARSDELTRHYRKHTGVKPFKCADCDRSFSRSDHLALHRRRHMLV", "length": 393, "header": "tr|A0A8W4FMU4-1|A0A480USH1_PIG Computationally mapped isoform of KLF transcription factor 12 OS=Sus scrofa OX=9823 GN=KLF12 PE=4 SV=2 CANONICAL=A0A480USH1-1" }, "locus": { "chromosome": "11", "start_pos": 46255635, "end_pos": 45990719, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092750.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092750.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080518.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080518.1" } ] } }, { "isoform_ac": "I3LN86-1", "url": "https://www.uniprot.org/uniprotkb/A0A480USH1/entry#I3LN86-1", "sequence": { "sequence": "MNIHMKRKTIKNIDTFENRMLMLDGMPAVRVKTELLESEQGSPNVHNYPDMEAVPLLLNNVKGEPPEDSLSVDHFQTQTEPVDLSINKARTSPTAVSSSPVSMTASASSPSSTSTSSSSSSRPASSPTVITSVSSASSSSTVLTPGPLVASASGVGGQQFLHIIHPVPPSSPMNLQSNKLSHVHRIPVVVQSVPVVYTAVRSPGNVNNTIVVPLLEDGRSHGKAQMDPRGLSPRQSKSDSDDDDLPNVTLDSVNETGSTALSIARAVQEVHPSPVSRVRGNRMNNQKFACSISPFSIESTRRQRRSESPDSRKRRIHRCDFEGCNKVYTKSSHLKAHRRTHTGQGVESDLQLPAYTTATTVSRSKLHLQPTPQLTGNTRCLTH", "length": 383, "header": "tr|I3LN86-1|A0A480USH1_PIG Computationally mapped isoform of KLF transcription factor 12 OS=Sus scrofa OX=9823 GN=KLF12 PE=4 SV=3 CANONICAL=A0A480USH1-1" }, "locus": { "chromosome": "11", "start_pos": 46308237, "end_pos": 46011076, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026048.3", "url": "https://www.ensembl.org/id/ENSSSCT00000026048.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025558.3", "url": "https://www.ensembl.org/id/ENSSSCP00000025558.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LN86", "url": "https://www.uniprot.org/uniprotkb/I3LN86" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480USH1", "url": "https://www.uniprot.org/uniprotkb/A0A480USH1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A480USH1", "url": "https://www.uniprot.org/uniprotkb/A0A480USH1" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A480USH1", "url": "https://www.uniprot.org/uniprotkb/A0A480USH1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A480USH1", "url": "https://www.uniprot.org/uniprotkb/A0A480USH1" } ], "pmid": "" }, { "name": "sequence-specific double-stranded DNA binding", "id": "GO:1990837", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990837", "evidence": [ { "database": "UniProtKB", "id": "A0A480USH1", "url": "https://www.uniprot.org/uniprotkb/A0A480USH1" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100626632", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626632", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TMTIFFN", "url": "https://omabrowser.org/oma/group/TMTIFFN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A2Z1", "url": "https://www.orthodb.org/?gene=A0A287A2Z1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SDE2", "url": "https://www.orthodb.org/?gene=A0A4X1SDE2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12112", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12112", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12112:SF47", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12112:SF47", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01368", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01368", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02833", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02833", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005663542", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663542", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "24576", "url": "https://www.rhea-db.org/rhea/24576", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A2Z1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Z1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2Z1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SDE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SDE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9P0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9P0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9P0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9P0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH08", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH08-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDYLQGCRAALQESRPLHVVLGNEACDLDSMVSALALAFYLAKTTEAEEVFVPVLNIKRSELPLRGDNVFFLQKIHIPESLLIFRDEIDLHALHQAGQLTLILVDHHVLPKTDAALEEAVAEVLDHRPIDQKHCPPCHVSVELVGSCATLVTERILQGAPEILDLQIAALLHGTIILDCVNMDLKIGKATPKDNKYVEKLEALFPDLPNRNDIFDSLQKAKFDVSGLTTEQMLRKDQKTISRQGIKVAISAIYMDLEAFLQRSGLIADLHAFCQAHSYDALVAMTIFFNTHNEPVRQLAVFCPHTALRVMICGVLESSHSPSLKLVPVPSTHPNLQAYLQGNTQVSRKKLLPLLQEALSAYFDSMKSPSGQPETAGVSREQVDKELDRAGNSLISGLSQDEEEPPLPPTPMNSLVDECPLDQGLPKFSAEVIFEKCSQISLSESTTASLSKK", "length": 453, "header": "tr|A0A4X1SDE2-1|A0A4X1SDE2_PIG Isoform 1 of Exopolyphosphatase PRUNE1 OS=Sus scrofa OX=9823 GN=PRUNE1 PE=1 SV=1 CANONICAL=A0A4X1SDE2-1" }, "isoforms": [ { "isoform_ac": "A0A287A2Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2/entry#A0A287A2Z1-1", "sequence": { "sequence": "MEDYLQGCRAALQESRPLHVVLGNEACDLDSMVSALALAFYLAKTTEAEEVFVPVLNIKRSELPLRGDNVFFLQKIHIPESLLIFRDEIDLHALHQAGQLTLILVDHHVLPKTDAALEEAVAEVLDHRPIDQKHCPPCHVSVELVGSCATLVTERILQGAPEILDLQIAALLHGTIILDCVNMDLKIGKATPKDNKYVEKLEALFPDLPNRNDIFDSLQKAKFDVSGLTTEQMLRKDQKTISRQGIKVAISAIYMDLEICGVLESSHSPSLKLVPVPSTHPNLQAYLQGNTQVSRKKLLPLLQEALSAYFDSMKSPSGQPETAGVSREQVDKELDRAGNSLISGLSQDEEEPPLPPTPMNSLVDECPLDQGLPKFSAEVIFEKCSQISLSESTTASLSKK", "length": 400, "header": "tr|A0A287A2Z1-1|A0A4X1SDE2_PIG Computationally mapped isoform of Exopolyphosphatase PRUNE1 OS=Sus scrofa OX=9823 GN=PRUNE1 PE=1 SV=1 CANONICAL=A0A4X1SDE2-1" }, "locus": { "chromosome": "4", "start_pos": 98216720, "end_pos": 98195580, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054336.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054336.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038304.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038304.1" } ] } }, { "isoform_ac": "A0A4X1SDE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2/entry#A0A4X1SDE2-1", "sequence": { "sequence": "MEDYLQGCRAALQESRPLHVVLGNEACDLDSMVSALALAFYLAKTTEAEEVFVPVLNIKRSELPLRGDNVFFLQKIHIPESLLIFRDEIDLHALHQAGQLTLILVDHHVLPKTDAALEEAVAEVLDHRPIDQKHCPPCHVSVELVGSCATLVTERILQGAPEILDLQIAALLHGTIILDCVNMDLKIGKATPKDNKYVEKLEALFPDLPNRNDIFDSLQKAKFDVSGLTTEQMLRKDQKTISRQGIKVAISAIYMDLEAFLQRSGLIADLHAFCQAHSYDALVAMTIFFNTHNEPVRQLAVFCPHTALRVMICGVLESSHSPSLKLVPVPSTHPNLQAYLQGNTQVSRKKLLPLLQEALSAYFDSMKSPSGQPETAGVSREQVDKELDRAGNSLISGLSQDEEEPPLPPTPMNSLVDECPLDQGLPKFSAEVIFEKCSQISLSESTTASLSKK", "length": 453, "header": "tr|A0A4X1SDE2-1|A0A4X1SDE2_PIG Isoform 1 of Exopolyphosphatase PRUNE1 OS=Sus scrofa OX=9823 GN=PRUNE1 PE=1 SV=1 CANONICAL=A0A4X1SDE2-1" }, "locus": { "chromosome": "4", "start_pos": 98216720, "end_pos": 98195580, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007277.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007277.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007082.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007082.2" } ] } }, { "isoform_ac": "A0A5G2Q9P0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2/entry#A0A5G2Q9P0-1", "sequence": { "sequence": "MEDYLQGCRAALQESRPLHVVLGNEACDLDSMVSALALAFYLAKTTEAEEVFVPVLNIKRSELPLRGDNVFFLQKIHIPESLLIFRDEIDLHALHQAGQLTLILVDHHVLPKTDAALEEAVAEVLDHRPIDQKHCPPCHVSVELVGSCATLVTERILQGAPEILDLQIAALLHGTIILDCVNMDLKIGKATPKDNKYVEKLEALFPDLPNRNDIFDSLQKAKFDVSGLTTEQMLRKDQKTISRQGIKVAISAIYMDLEAFLQRSGLIADLHAFCQAHSYDALVAMTIFFNTHNEPVRQLAVFCPHTALRVMICGVLESSHSPSLKLVPVPSTHPNLQAYLQGNTQVSRKKLLPLLQEALSAYFDSMKSPSGQPETAGVSREQVDKELDRAGNSLISGLSQDEEEPPLPPTPMNSLVDECPLDQGLPKFSAEVIFEKLRDVA", "length": 441, "header": "tr|A0A5G2Q9P0-1|A0A4X1SDE2_PIG Computationally mapped isoform of Exopolyphosphatase PRUNE1 OS=Sus scrofa OX=9823 GN=PRUNE1 PE=1 SV=1 CANONICAL=A0A4X1SDE2-1" }, "locus": { "chromosome": "4", "start_pos": 98216720, "end_pos": 98195541, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077652.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077652.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061039.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061039.1" } ] } }, { "isoform_ac": "A0A5G2QH08-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2/entry#A0A5G2QH08-1", "sequence": { "sequence": "MEDYLQGCRAALQESRPLHVVLGNEACDLDSMVSALALAFYLAKTTEAEEVFVPVLNIKRSELPLRGDNVFFLQKIHIPESLLIFRDEIDLHALHQAGQLTLILVDHHVLPKTDAALEEAVAEVLDHRPIDQKHCPPCHVSVELVGSCATLVTERILQGAPEILDLQIAALLHGTIILDCVNMDLKIGKATPKDNKYVEKLEALFPDLPNRNDIFDSLQKAKFDVSGLTTEQMLRKDQKTISRQGIKVAISAIYMDLEAFLQRSGLIADLHAFCQAHSYDALVAMTIFFNTHNEPVRQLAVFCPHTALRVMEAKCYFIQWKICGVLESSHSPSLKLVPVPSTHPNLQAYLQGNTQVSRKKLLPLLQEALSAYFDSMKSPSGQPETAGVSREQVDKELDRAGNSLISGLSQDEEEPPLPPTPMNSLVDECPLDQGLPKFSAEVIFEKCSQISLSESTTASLSKK", "length": 463, "header": "tr|A0A5G2QH08-1|A0A4X1SDE2_PIG Computationally mapped isoform of Exopolyphosphatase PRUNE1 OS=Sus scrofa OX=9823 GN=PRUNE1 PE=1 SV=1 CANONICAL=A0A4X1SDE2-1" }, "locus": { "chromosome": "4", "start_pos": 98216720, "end_pos": 98195580, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082295.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082295.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063099.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063099.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 410, "start_aa": "Thr", "end_pos": 410, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr410", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9P0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9P0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100626632", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626632", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A9L3-1", "protein_name": "Prune exopolyphosphatase 1", "gene_name": "PRUNE1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MERFLGGRRAALQEHIQRRQEVHVVMGNEACDLDSTVSALALAYFLAKTSVPPKAAFIPVLNIPRADFALRTETTFLLREHSIPDSSLIFRDEIDLAGLHRAGLLSLTLVDHHVLPSTDAALEEAVVDVLDHRPLEREWAPSCQLTVELVGSCATLVTERIAQGPPGVLDRTTAALLHGTILLDSVNLSPAAGKVTPRDVLCVSLLESRFPELPPHDSIYGALQAAKFDVSGLTTEQMLRKDLKTVSGDEQVLAISGVYMDIELFLRRPGLLQDLETFCQTRGYSVLVAMTVSFNDCYEPTRQLAVYSQHEALRSTVCRALEEATTPALHLQALPSPWPCISAYAQGNTLASRKKVLPILRAALGGGPGTAAGPEEEAAPPPTPMNSLVEESPLAQAVPPVCPQAVLERVSRMAAEQPDSDK", "length": 422 }, "evidence": [ { "id": "A0A4X1SDE2", "url": "https://omabrowser.org/oma/group/A0A4X1SDE2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3H2Y2-1", "protein_name": "Exopolyphosphatase PRUNE1", "gene_name": "Prune1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEDYLQDCRAALQESRPLHVVLGNEACDLDSMVSALALAFYLTKTSESGEIFIPVLNINRSELPLRGDNVFFLQKVRIPEPVLIFRDEIDLHALHQAGQLTLTLVDHHVLPKSDAALEEAVAEVLDHRPIEQKYCPPCHVSVEHVGSCATLVAERILQGAPEILDRQTAFLLYGTIILDCVNMDAKVGKATLKDSKYVEKLEALFPDLPQREDIFDSLQKAKFDVSGLTTEQMLRKDQKTVCRQDTKVAISAVYMDLEAFLQRLDLLEDLSAFCHEHSYDALVAMTIFFNTHNEPVRQLAVFCPHSALRMTICGVLEQSTSPPLKLTPIPSISPDLQAYLQGNTQVSRKKLLPVLQEALSAYFDSTKMPSGQLGVVGMSREQGDKELDRAGSSIFGLSQDEEDPPLPPTPMNSLVDECPLDQGLPKLSAEAVFEKCSQISLSQSTRACPSNK", "length": 452 }, "evidence": [ { "id": "A0A4X1SDE2", "url": "https://omabrowser.org/oma/group/A0A4X1SDE2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P38698-1", "protein_name": "Polyphosphatase", "gene_name": "PPX1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSPLRKTVPEFLAHLKSLPISKIASNDVLTICVGNESADMDSIASAITYSYCQYIYNEGTYSEEKKKGSFIVPIIDIPREDLSLRRDVMYVLEKLKIKEEELFFIEDLKSLKQNVSQGTELNSYLVDNNDTPKNLKNYIDNVVGIIDHHFDLQKHLDAEPRIVKVSGSCSSLVFNYWYEKLQGDREVVMNIAPLLMGAILIDTSNMRRKVEESDKLAIERCQAVLSGAVNEVSAQGLEDSSEFYKEIKSRKNDIKGFSVSDILKKDYKQFNFQGKGHKGLEIGLSSIVKRMSWLFNEHGGEADFVNQCRRFQAERGLDVLVLLTSWRKAGDSHRELVILGDSNVVRELIERVSDKLQLQLFGGNLDGGVAMFKQLNVEATRKQVVPYLEEAYSNLEE", "length": 397 }, "evidence": [ { "id": "A0A4X1SDE2", "url": "https://omabrowser.org/oma/group/A0A4X1SDE2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q5E9Y6-1", "protein_name": "Exopolyphosphatase PRUNE1", "gene_name": "PRUNE1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MENYLQGCRAALQESRPIHVVLGNEACDLDSMVSALALAFYLAKTTEAEEVFVPVLNIKRSELPLRGDNVFFLQKIHIPESVLIFRDEIDLHALHQAGQLTLILVDHHVLPKSDAALEEAVAEVLDHRPIDQRHCPPCHVSVELVGSCATLVAERILQGAPEILDRQTAALLHGTILLDCVNMDLKIGKATLKDSHYVEKLEALFPDLPSRNDIFDSLQKAKFDVSGLTTEQMLRKDQKTISRQGTKVAISAIYMDMEAFLQRSGLLADLRAFCQAHSYDALVAMTIFFNTYNEPVRQLAVFCPHAALRMTICGILEHSHSPPLKLTPVPSSHPDLQAYLQGNTQISRKKVLPLLQEALSAYFDSTNIPLGQPETEGVSREQVDKELDRAGNSLLSGLSQDEEEPPLPPTPMNSLVDECPLDQGLPKFSAEVIFEKCSQISLSEPTTASLSKK", "length": 453 }, "evidence": [ { "id": "A0A4X1SDE2", "url": "https://omabrowser.org/oma/group/A0A4X1SDE2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AYG3-1", "protein_name": "Exopolyphosphatase PRUNE1", "gene_name": "Prune1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDYLQDCRAALQESRPLHVVLGNEACDLDSMVSALALAFYLTKTSEAEDIFIPVLNIKRSELPLRGDNVFFLQEVKIAESALIFRDEIDLLALHQAGQLTLILVDHHMLPKSDAALEEAVAEVLDHRPIEQKYCPPCHVSVELVGSCATLVAERILQGAPETLDRQTAALLHGTIILDCVNMDAKIGKATLKDNEYVEKLEALFPDLPKRKDIFDSLQKAKFDVSGLTTEQMLRKDQKTIYRQGTKVAVSAVYMDLEAFLQRSGLLSDLSAFCQDHSYDALVAMAIFFNTHNEPVRQLAIFCPHEALRMTICGVLEQSTSPALKLTPIPSISAHLQAYLQGNTQVSRKKLLPVLQEALSAYLDSMRTPAGQLEAALGMSREQADKELDKASNSLIAGLSQDDEDPPLPPTPMNSLVDECPLDQGLPKLSAEAVFEKCSQISLSQSTRACPSNK", "length": 454 }, "evidence": [ { "id": "A0A4X1SDE2", "url": "https://omabrowser.org/oma/group/A0A4X1SDE2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86TP1-1", "protein_name": "Exopolyphosphatase PRUNE1", "gene_name": "PRUNE1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDYLQGCRAALQESRPLHVVLGNEACDLDSTVSALALAFYLAKTTEAEEVFVPVLNIKRSELPLRGDIVFFLQKVHIPESILIFRDEIDLHALYQAGQLTLILVDHHILSKSDTALEEAVAEVLDHRPIEPKHCPPCHVSVELVGSCATLVTERILQGAPEILDRQTAALLHGTIILDCVNMDLKIGKATPKDSKYVEKLEALFPDLPKRNDIFDSLQKAKFDVSGLTTEQMLRKDQKTIYRQGVKVAISAIYMDLEAFLQRSNLLADLHAFCQAHSYDVLVAMTIFFNTHNEPVRQLAIFCPHVALQTTICEVLERSHSPPLKLTPASSTHPNLHAYLQGNTQVSRKKLLPLLQEALSAYFDSMKIPSGQPETADVSREQVDKELDRASNSLISGLSQDEEDPPLPPTPMNSLVDECPLDQGLPKLSAEAVFEKCSQISLSQSTTASLSKK", "length": 453 }, "evidence": [ { "id": "A0A4X1SDE2", "url": "https://omabrowser.org/oma/group/A0A4X1SDE2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BIW1-1", "protein_name": "Exopolyphosphatase PRUNE1", "gene_name": "Prune1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDYLQDCRAALQDSRPLHVVLGNEACDLDSMVSALALAFYLTKTSEAEDIFIPVLNIKRSELPLRGDNVFFLQEVKIPEPALIFRDEIDLLALHQAGQLTLILVDHHILPKSDAALEEAVAEVLDHRPIEQKYCPPCHVSVELVGSCATLVTERILQGAPETLDRQTAALLHGTIILDCVNMDTNIGKATPKDSKYVEELEALFPDLPKRKDIFDSLQKAKFDVSGLTTEQMLRKDQKTVYRQGTKVAISAIYMDLKAFLQRTDLFTDLSSFCHDHSYDALVAMTIFFNTQNEPVRQLAIFCPHEALRMTICGILERSTSPPLKLTPIPSTSPNLQAYHQGNTQVSRKKLLPVLQEALSAYLDSAKMASGQSEVAVGMSREQVDKDLDKASNSLISGLSQDEEDPPLPPTPMNSLVDECPLDQGLPKFSAEAVFEKCSQISLSQSARACTSNK", "length": 454 }, "evidence": [ { "id": "A0A4X1SDE2", "url": "https://omabrowser.org/oma/group/A0A4X1SDE2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "pyrophosphatase activity", "id": "GO:0016462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016462", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2" } ], "pmid": "" }, { "name": "tubulin binding", "id": "GO:0015631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015631", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2" } ], "pmid": "" }, { "name": "inorganic diphosphate phosphatase activity", "id": "GO:0004427", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004427", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2" } ], "pmid": "" }, { "name": "phosphatase activity", "id": "GO:0016791", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016791", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2" } ], "pmid": "" }, { "name": "exopolyphosphatase activity", "id": "GO:0004309", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004309", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2" } ], "pmid": "" }, { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of microtubule polymerization", "id": "GO:0031113", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031113", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2" } ], "pmid": "" }, { "name": "regulation of neurogenesis", "id": "GO:0050767", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050767", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDE2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "24576", "name": "", "equation": "diphosphate + H2O = 2 phosphate + 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"Protein Classification" ] }, { "id": "IPR031940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DHDYQRK", "url": "https://omabrowser.org/oma/group/DHDYQRK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480NW01", "url": "https://www.orthodb.org/?gene=A0A480NW01", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13006", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13006", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13006:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13006:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15997", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15997", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27556", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27556", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013838135", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013838135", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A507", "url": "https://www.uniprot.org/uniprotkb/A0A287A507", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A507-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A507-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480NW01", "url": "https://www.uniprot.org/uniprotkb/A0A480NW01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480NW01-1", "url": "https://www.uniprot.org/uniprotkb/A0A480NW01-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8S4", "url": "https://www.uniprot.org/uniprotkb/I3L8S4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8S4-1", "url": "https://www.uniprot.org/uniprotkb/I3L8S4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASVLSRRLGKRSLLGARVLGPPGAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVLKAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEVWLAELQGPIPQAPPPEPGTQAPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGVEANFSASRAACDPWKESGDVSDSGSSTTSGHWSGSSGVSTPSPPHPQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMKEEAAALGAPAADLAPTPGMTSPPLAILPPPPPKAQPSGPDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWATAPSTASSLSPVRSRSLSFSEPQQPPPAMKSHLIVTSPPRAQSSARKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "length": 500, "header": "tr|A0A480NW01-1|A0A480NW01_PIG Isoform 1 of Zinc finger protein 395 OS=Sus scrofa OX=9823 GN=ZNF395 PE=4 SV=1 CANONICAL=A0A480NW01-1" }, "isoforms": [ { "isoform_ac": "A0A287A507-1", "url": "https://www.uniprot.org/uniprotkb/A0A480NW01/entry#A0A287A507-1", "sequence": { "sequence": "MEKKALKQRQMERKGSSMASVLSRRLGKRSLLGARVLGPPGAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVLKAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEVWLAELQGPIPQAPPPEPGTQAPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGVEANFSASRAACDPWKESGDVSDSGSSTTSGHWSGSSGVSTPSPPHPQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMKEEAAALGAPAADLAPTPGMTSPPLAILPPPPPKAQPSGPDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWATAPSTASSLSPVRSRSLSFSEPQQPPPAMKSHLIVTSPPRAQSSARKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "length": 517, "header": "tr|A0A287A507-1|A0A480NW01_PIG Computationally mapped isoform of Zinc finger protein 395 OS=Sus scrofa OX=9823 GN=ZNF395 PE=4 SV=3 CANONICAL=A0A480NW01-1" }, "locus": { "chromosome": "14", "start_pos": 12184425, "end_pos": 12139126, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043555.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043555.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039049.3", "url": "https://www.ensembl.org/id/ENSSSCP00000039049.3" } ] } }, { "isoform_ac": "A0A480NW01-1", "url": "https://www.uniprot.org/uniprotkb/A0A480NW01/entry#A0A480NW01-1", "sequence": { "sequence": "MASVLSRRLGKRSLLGARVLGPPGAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVLKAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEVWLAELQGPIPQAPPPEPGTQAPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGVEANFSASRAACDPWKESGDVSDSGSSTTSGHWSGSSGVSTPSPPHPQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMKEEAAALGAPAADLAPTPGMTSPPLAILPPPPPKAQPSGPDHPGLESYLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWATAPSTASSLSPVRSRSLSFSEPQQPPPAMKSHLIVTSPPRAQSSARKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "length": 500, "header": "tr|A0A480NW01-1|A0A480NW01_PIG Isoform 1 of Zinc finger protein 395 OS=Sus scrofa OX=9823 GN=ZNF395 PE=4 SV=1 CANONICAL=A0A480NW01-1" }, "locus": { "chromosome": "14", "start_pos": 12154107, "end_pos": 12139126, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069716.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069716.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069872.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069872.1" } ] } }, { "isoform_ac": "I3L8S4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480NW01/entry#I3L8S4-1", "sequence": { "sequence": "MASVLSRRLGKRSLLGARVLGPPGAVPPLEPQAELLEGAAPQPFLASKDTSCQEQPKEVLKAPDTAGPQPVAFQPGQKVCVWYGGQECPGMVEQHSWAEDKVTVWLLDQKLQICCKAEEVWLAELQGPIPQAPPPEPGTQAPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGVEANFSASRAACDPWKESGDVSDSGSSTTSGHWSGSSGVSTPSPPHPQASPKYLGDAFGSPQTDHGFETDPDAFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQMKEEAAALGAPAADLAPTPGMTSPPLAILPPPPPKAQPSGPDHPGLESYLPSGALSKSAPGSFWHIQADHAYQVRSRSLSFSEPQQPPPAMKSHLIVTSPPRAQSSARKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "length": 469, "header": "tr|I3L8S4-1|A0A480NW01_PIG Computationally mapped isoform of Zinc finger protein 395 OS=Sus scrofa OX=9823 GN=ZNF395 PE=4 SV=3 CANONICAL=A0A480NW01-1" }, "locus": { "chromosome": "14", "start_pos": 12154107, "end_pos": 12139126, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024522.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024522.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020435.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020435.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 343, "start_aa": "Thr", "end_pos": 343, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr343", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L8S4", "url": "https://www.uniprot.org/uniprotkb/I3L8S4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7F3A1-1", "protein_name": "Zinc finger protein 395 isoform X2", "gene_name": "Znf395", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAWRKRHLLQPSQCDPGPREGERRELTSQSCPPLQTQAMVRMDDPPVMHIRRQSRVSSMLSRRLGKRSLLGARVLGPNASEVPLGASLPLEPQIEVPEGATPQPSHTSKDPVCQEQPKEVLKALGTSGHPQVAFHPGQKVCVWYGGQECKGLVEQHSWAEDKVTVRLLDQKLQICCKVEEVWLAELQGATSQVPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGAEPIFSVSRAACGDPWKESGDVSDSGSSTTSGHWSGSSGISTPSPPHPQASPKYLGDAFGSPQTDHGFETDSDPFLLDEPAPRKRKNSVKVMYKCLWPSCGKVLRSIVGIKRHVKALHLGDTVDPDQFKREEDFYYTEMQMKEESALAVAAPSAPGTPNSEPAPTSRVTSPSLAALSLPPPKVQSSGPEHPGLESPLPSVALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWAAAPTTTSPLSPVRSRSLSFSEPQQPPPTVKSHLIVTSPPRAQSSSRKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "length": 560 }, "evidence": [ { "id": "A0A480NW01", "url": "https://omabrowser.org/oma/group/A0A480NW01/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZPR2-1", "protein_name": "Zinc finger protein 395", "gene_name": "Zfp395", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTEKPVSSMLSRRLGKRSLLGARVLGPSASEVPSGASLPLEPQIEVPEGATPQSSLTSKDPVCQEQPKEVLRALGTSGHPQVTFQPGQKVCVWYGGQECKGLVEQHSWAEDKVTVRLLDQKLQICCKVEEVWLAEPQGTTSHVPASEPRAQVPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGAEPIFSVSRAACGDPWKESGDISDSGSSGHWSGSSGSSTPSPPHPQASPKYLGDAFGSPQTDHGFETDTDPFLLDEPAPRKRKNSVKVMYKCLWPSCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEMQMKEDCAVAVAAPPPPGTPTGEPVSTSRVTSPSLAALSLPPAKVQSSGPEHPGLESSLPPVALSKSAPGSFWHIQADHAYQALPAFQIPVSPHIYTSISWAAAPTTTSSLSPVRSRSLSFSEPQQPPPTVKSHLIVTSPPRAQSSTRKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "length": 516 }, "evidence": [ { "id": "A0A480NW01", "url": "https://omabrowser.org/oma/group/A0A480NW01/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9Q5N9-1", "protein_name": "Zinc finger protein 395", "gene_name": "Zfp395", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSRRLGKRSLLGARVLGPSAAEVPSGATLPLEPQIEVPEGAMSLSPLTSKDPVCQEQPKELLKALGTSGHPQVAFQPGQKVCVWYGGQECKGLVEQHSWAEDKVTVRLLDQKLQIRCKVEEVWLAELQGSASHVPALEPGAQVPAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGAEPIFSVSRAACGDLWKESGDVSDSGSSGHWSGSSGSSTPSPPHPQASPKYLGDAFGSPQTDHGFETDPDPFLLDEPAPRKRRNSVKVMYKCLWPSCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEMQMKEESAQAVAAPPAPGTPMGEPASTSRVTSPSLAALSLPPAKVQSSGPEHPGLESSLPSVALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSISWAAAPTTTSSLSPVRSRSLSFSEPQQPPPTVKSHLIVTSPPRAQSSTRKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "length": 508 }, "evidence": [ { "id": "A0A480NW01", "url": "https://omabrowser.org/oma/group/A0A480NW01/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H8N7-1", "protein_name": "Zinc finger protein 395", "gene_name": "ZNF395", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASVLSRRLGKRSLLGARVLGPSASEGPSAAPPSEPLLEGAAPQPFTTSDDTPCQEQPKEVLKAPSTSGLQQVAFQPGQKVYVWYGGQECTGLVEQHSWMEGQVTVWLLEQKLQVCCRVEEVWLAELQGPCPQAPPLEPGAQALAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCSPVVQSPPGTEANFSASRAACDPWKESGDISDSGSSTTSGHWSGSSGVSTPSPPHPQASPKYLGDAFGSPQTDHGFETDPDPFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQLKEESAAAAAAAAAGTPVPGTPTSEPAPTPSMTGLPLSALPPPLHKAQSSGPEHPGPESSLPSGALSKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSVSWAAAPSAACSLSPVRSRSLSFSEPQQPAPAMKSHLIVTSPPRAQSGARKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD", "length": 513 }, "evidence": [ { "id": "A0A480NW01", "url": "https://omabrowser.org/oma/group/A0A480NW01/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A480NW01", "url": 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"evidence": [ { "database": "UniProtKB", "id": "A0A480NW01", "url": "https://www.uniprot.org/uniprotkb/A0A480NW01" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480NW01", "url": "https://www.uniprot.org/uniprotkb/A0A480NW01" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A480NW01", "url": "https://www.uniprot.org/uniprotkb/A0A480NW01" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A480NW01", "url": "https://www.uniprot.org/uniprotkb/A0A480NW01" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A480NW01", "url": "https://www.uniprot.org/uniprotkb/A0A480NW01" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A480NW01", "url": "https://www.uniprot.org/uniprotkb/A0A480NW01" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 190, "end_pos": 192, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480NW01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480NW01" }, { "id": "PS50157", "database": "PROSITE", "url": 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"https://alphafold.ebi.ac.uk/entry/A0A4X1SD82", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038475", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038475", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05301", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05301", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157017", "url": "https://www.ncbi.nlm.nih.gov/gene/100157017", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006139", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006139", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006140", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006140", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050223", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050223", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IMEFIEV", "url": "https://omabrowser.org/oma/group/IMEFIEV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A5X0", "url": "https://www.orthodb.org/?gene=A0A287A5X0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SD82", "url": "https://www.orthodb.org/?gene=A0A4X1SD82", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10996", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10996", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10996:SF257", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10996:SF257", "database": 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"UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDQELPGVLVSGFEGPYSICEDHVGVLQKHFNLITMQEFLENKTHFGPKIQAIYLWAGKPHINQELLQSLPSLRVIASSGVGLDHLDLKLIDSFGVKVANTPHAVANPTADLGMALLLAVARRVVEGHQLAISPHTENFSANWLGEEVTGATLGIIGMGSIGYKIAQRARAFEMKILYHNRKRRSLEEEEAVGATYCERLDDLLQQSDFVMLAVNLTPQSQGLIGRRELSLMKPTATLINVGRGLLVDQDALVEALQTGVIKAAALDVTYPEPLPRDHPLLELKNVTLTPHIGSATHQARRQMMENLVESILASLSGLPIPNEVLLK", "length": 328, "header": "tr|A0A4X1SD82-1|A0A4X1SD82_PIG Isoform 1 of Glyoxylate reductase/hydroxypyruvate reductase OS=Sus scrofa OX=9823 GN=LOC100157017 PE=1 SV=1 CANONICAL=A0A4X1SD82-1" }, "isoforms": [ { "isoform_ac": "A0A287A5X0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SD82/entry#A0A287A5X0-1", "sequence": { "sequence": "MSRCGLDTGSSPTRAMPAMGDQELPGVLVSGFEGPYSICEDHVGVLQKHFNLITMQEFLENKTHFGPKIQAIYLWAGKPHINQELLQSLPSLRVIASSGVGLDHLDLKLIDSFGVKVANTPHAVANPTADLGMALLLAVARRVVEGHQLAISPHTENFSANWLGEEVTGATLGIIGMGSIGYKIAQRARAFEMKILYHNRKRRSLEEEEAVGATYCERLDDLLQQSDFVMLAVNLTPQSQGLIGRRELSLMKPTATLINVGRGLLVDQDALVEALQTGVIKAAALDVTYPEPLPRDHPLLELKNVTLTPHIGSATHQARRQMMENLVESILASLSGLPIPNEVLLK", "length": 346, "header": "tr|A0A287A5X0-1|A0A4X1SD82_PIG Computationally mapped isoform of Glyoxylate reductase/hydroxypyruvate reductase OS=Sus scrofa OX=9823 GN=LOC100157017 PE=1 SV=1 CANONICAL=A0A4X1SD82-1" }, "locus": { "chromosome": "6", "start_pos": 128027584, "end_pos": 128005644, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053793.2", "url": "https://www.ensembl.org/id/ENSSSCT00000053793.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039213.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039213.1" } ] } }, { "isoform_ac": "A0A4X1SD82-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SD82/entry#A0A4X1SD82-1", "sequence": { "sequence": "MGDQELPGVLVSGFEGPYSICEDHVGVLQKHFNLITMQEFLENKTHFGPKIQAIYLWAGKPHINQELLQSLPSLRVIASSGVGLDHLDLKLIDSFGVKVANTPHAVANPTADLGMALLLAVARRVVEGHQLAISPHTENFSANWLGEEVTGATLGIIGMGSIGYKIAQRARAFEMKILYHNRKRRSLEEEEAVGATYCERLDDLLQQSDFVMLAVNLTPQSQGLIGRRELSLMKPTATLINVGRGLLVDQDALVEALQTGVIKAAALDVTYPEPLPRDHPLLELKNVTLTPHIGSATHQARRQMMENLVESILASLSGLPIPNEVLLK", "length": 328, "header": "tr|A0A4X1SD82-1|A0A4X1SD82_PIG Isoform 1 of Glyoxylate reductase/hydroxypyruvate reductase OS=Sus scrofa OX=9823 GN=LOC100157017 PE=1 SV=1 CANONICAL=A0A4X1SD82-1" }, "locus": { "chromosome": "6", "start_pos": 128027584, "end_pos": 128016022, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044916.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044916.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057204.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057204.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5X0", "url": "https://www.uniprot.org/uniprotkb/A0A287A5X0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "NAD binding", "id": "GO:0051287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051287", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SD82", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SD82" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor", "id": "GO:0016616", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016616", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SD82", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SD82" } ], "pmid": "" }, { "name": "hydroxypyruvate reductase [NAD(P)H] activity", "id": "GO:0016618", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016618", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SD82", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SD82" } ], "pmid": "" }, { "name": "glyoxylate reductase (NADPH) activity", "id": "GO:0030267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030267", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SD82", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SD82" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SD82", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SD82" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 139, "end_pos": 141, "annotation": "n_glycosylation_sequon" }, { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 286, "end_pos": 288, "annotation": "n_glycosylation_sequon" }, { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1SD82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SD82" }, { "id": "PF02826", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02826" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding", "eco_id": "ECO_0000259", "start_pos": 115, "end_pos": 294, "start_aa": "Met", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1SD82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SD82" }, { "id": "PF00389", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00389" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "D-isomer specific 2-hydroxyacid dehydrogenase catalytic", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 325, "start_aa": "Ser", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480V1U2-1", "uniprot_ac": "A0A480V1U2", "uniprot_id": "A0A480V1U2_PIG", "mass": { "chemical_mass": 69167.0, "monoisotopic_mass": 69167.0 }, "refseq": { "ac": "XP_020952956", "name": "zinc finger protein 548-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952956" }, "gene_names": [ { "name": "LOC110261312", "type": "recommended", "evidence": [ { "id": "A0A480V1U2", "database": 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"database": "UniProtKB", "id": "A0A480V1U2", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2#function" }, { "database": "UniProtKB", "id": "A0A481AMI3", "url": "https://www.uniprot.org/uniprotkb/A0A481AMI3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480V1U2", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110261312", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000038327", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038327", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110261312", "url": "https://www.ncbi.nlm.nih.gov/gene/110261312", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050758", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050758", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NANFVKH", "url": "https://omabrowser.org/oma/group/NANFVKH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232:SF133", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232:SF133", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020952956", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952956", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A641", "url": "https://www.uniprot.org/uniprotkb/A0A287A641", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A641-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A641-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480V1U2", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480V1U2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481AMI3", "url": "https://www.uniprot.org/uniprotkb/A0A481AMI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481AMI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A481AMI3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZB9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0K1Y5", "url": "https://www.uniprot.org/uniprotkb/A0A8D0K1Y5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0K1Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0K1Y5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPAQGPMAAAEMLTDPEQGRVVFEDVAISFSQEEWGLLDEAQRRLYHAVMTEILALLTSPGCWHGAQDEEARSEQALSVAVSPARTPEPDPSTRTARPCEMCDPLCKCLVRLPKQDGMYPDRGPHVGVTNLFQQEKHQVRDKLSRRDEGQPSCLTKSSIHIADGTSTCTGDGKDLPGITGLLQQPGPHSVGKPHRDTACGDAFGGGQRDYRCTQCGKAFSREKILVEHQKIHTGVRPYECSSCGLAFVRKFHLVQHQRIHTGEMPFQCSECGKCFRYNSTLISHQRVHRGGVRSYECSKCGEFFKYNANFMKHQRIHNGERPYECRECGKFFRYNYRLVRHGRVHTGERPYECSECGKFFRYSSTFIRHQRVHTAERPYKCNECGKTFRYNSTLIKHQRVHTGERPYECSECGKFFRYTSTLIRHQRIHTVERPYECSLCGEFFRCKSKLIKHWQIHTGERPYECSECGKAFRYHCRLIRHKRVHSGERPYECSECGKFFRYSSNLIKHWRNHTGERPYECSECGKAFSHRHILVEHQKIHTGERPYECSKCQKAFIRKSHLVHHQKIHSEEDASAVIMGNSLDATSASLSREFTAVKAL", "length": 601, "header": "tr|A0A480V1U2-1|A0A480V1U2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110261312 PE=3 SV=1 CANONICAL=A0A480V1U2-1" }, "isoforms": [ { "isoform_ac": "A0A287A641-1", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2/entry#A0A287A641-1", "sequence": { "sequence": "MAAAEMLTDPEQGRVVFEDVAISFSQEEWGLLDEAQRRLYHAVMTEILALLTSPGCWHGAQDEEARSEQALSVAVSPARTPEPDPSTRTARPCEMCDPLCKCLVRLPKQDGMYPDRGPHVGVTNLFQQEKHQVRDKLSRRDEGQPSCLTKSSIHIADGTSTCTGDGKDLPGITGLLQQPGPHSVGKPHRDTACGDAFGGGQRDYRCTQCGKAFSREKILVEHQKIHTGVRPYECSSCGLAFVRKFHLVQHQRIHTGEMPFQCSECGKCFRYNSTLISHQRVHRGGVRSYECSKCGEFFKYNANFMKHQRIHNGERPYECRECGKFFRYNYRLVRHGRVHTGERPYECSECGKFFRYSSTFIRHQRVHTAERPYKCNECGKTFRYNSTLIKHQRVHTGERPYECSECGKFFRYTSTLIRHQRIHTVERPYECSLCGEFFRCKSKLIKHWQIHTGERPYECSECGKAFRYHCRLIRHKRVHSGERPYECSECGKFFRYSSNLIKHWRNHTGERPYECSECGKAFSHRHILVEHQKIHTGERPYECSKCQKAFIRKSHLVHHQKIHSEEDASAVIMGNSLDATSASLSREFTAVKAL", "length": 594, "header": "tr|A0A287A641-1|A0A480V1U2_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110261312 PE=3 SV=2 CANONICAL=A0A480V1U2-1" }, "locus": { "chromosome": "6", "start_pos": 61826580, "end_pos": 61820048, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052392.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052392.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039227.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039227.2" } ] } }, { "isoform_ac": "A0A480V1U2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2/entry#A0A480V1U2-1", "sequence": { "sequence": "MSPAQGPMAAAEMLTDPEQGRVVFEDVAISFSQEEWGLLDEAQRRLYHAVMTEILALLTSPGCWHGAQDEEARSEQALSVAVSPARTPEPDPSTRTARPCEMCDPLCKCLVRLPKQDGMYPDRGPHVGVTNLFQQEKHQVRDKLSRRDEGQPSCLTKSSIHIADGTSTCTGDGKDLPGITGLLQQPGPHSVGKPHRDTACGDAFGGGQRDYRCTQCGKAFSREKILVEHQKIHTGVRPYECSSCGLAFVRKFHLVQHQRIHTGEMPFQCSECGKCFRYNSTLISHQRVHRGGVRSYECSKCGEFFKYNANFMKHQRIHNGERPYECRECGKFFRYNYRLVRHGRVHTGERPYECSECGKFFRYSSTFIRHQRVHTAERPYKCNECGKTFRYNSTLIKHQRVHTGERPYECSECGKFFRYTSTLIRHQRIHTVERPYECSLCGEFFRCKSKLIKHWQIHTGERPYECSECGKAFRYHCRLIRHKRVHSGERPYECSECGKFFRYSSNLIKHWRNHTGERPYECSECGKAFSHRHILVEHQKIHTGERPYECSKCQKAFIRKSHLVHHQKIHSEEDASAVIMGNSLDATSASLSREFTAVKAL", "length": 601, "header": "tr|A0A480V1U2-1|A0A480V1U2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110261312 PE=3 SV=1 CANONICAL=A0A480V1U2-1" }, "locus": { "chromosome": "6", "start_pos": 61826580, "end_pos": 61816877, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076382.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076382.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073861.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073861.1" } ] } }, { "isoform_ac": "A0A481AMI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2/entry#A0A481AMI3-1", "sequence": { "sequence": "MGPMAAAEMLTDPEQGRVVFEDVAISFSQEEWGLLDEAQRRLYHAVMTEILALLTSPGCWHGAQDEEARSEQALSVAVSPARTPEPDPSTRTARPCEMCDPLCKCLVRLPKQDGMYPDRGPHVGVTNLFQQEKHQVRDKLSRRDEGQPSCLTKSSIHIADGTSTCTGDGKDLPGITGLLQQPGPHSVGKPHRDTACGDAFGGGQRDYRCTQCGKAFSREKILVEHQKIHTGVRPYECSSCGLAFVRKFHLVQHQRIHTGEMPFQCSECGKCFRYNSTLISHQRVHRGGVRSYECSKCGEFFKYNANFMKHQRIHNGERPYECRECGKFFRYNYRLVRHGRVHTGERPYECSECGKFFRYSSTFIRHQRVHTAERPYKCNECGKTFRYNSTLIKHQRVHTGERPYECSECGKFFRYTSTLIRHQRIHTVERPYECSLCGEFFRCKSKLIKHWQIHTGERPYECSECGKAFRYHCRLIRHKRVHSGERPYECSECGKFFRYSSNLIKHWRNHTGERPYECSECGKAFSHRHILVEHQKIHTGERPYECSKCQKAFIRKSHLVHHQKIHSEEDASAVIMGNSLDATSASLSREFTAVKAL", "length": 597, "header": "tr|A0A481AMI3-1|A0A481AMI3_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110261312 PE=3 SV=1 CANONICAL=A0A480V1U2-1" }, "locus": { "chromosome": "6", "start_pos": 61826580, "end_pos": 61817473, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039668.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039668.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042866.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042866.2" } ] } }, { "isoform_ac": "A0A5G2QZB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2/entry#A0A5G2QZB9-1", "sequence": { "sequence": "MSPAQGPMAAAEMLTDPEQGRVVFEDVAISFSQEEWGLLDEAQRRLYHAVMTEILALLTSPAFLC", "length": 65, "header": "tr|A0A5G2QZB9-1|A0A480V1U2_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110261312 PE=3 SV=1 CANONICAL=A0A480V1U2-1" }, "locus": { "chromosome": "6", "start_pos": 61824956, "end_pos": 61816877, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080677.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080677.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069483.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069483.1" } ] } }, { "isoform_ac": "A0A8D0K1Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2/entry#A0A8D0K1Y5-1", "sequence": { "sequence": "MTEILALLTSPGCWHGAQDEEARSEQALSVAVSPARTPEPDPSTRTARPCEMCDPLCKCLVRLPKQDGMYPDRGPHVGVTNLFQQEKHQVRDKLSRRDEGQPSCLTKSSIHIADGTSTCTGDGKDLPGITGLLQQPGPHSVGKPHRDTACGDAFGGGQRDYRCTQCGKAFSREKILVEHQKIHTGVRPYECSSCGLAFVRKFHLVQHQRIHTGEMPFQCSECGKCFRYNSTLISHQRVHRGGVRSYECSKCGEFFKYNANFMKHQRIHNGERPYECRECGKFFRYNYRLVRHGRVHTGERPYECSECGKFFRYSSTFIRHQRVHTAERPYKCNECGKTFRYNSTLIKHQRVHTGERPYECSECGKFFRYTSTLIRHQRIHTVERPYECSLCGEFFRCKSKLIKHWQIHTGERPYECSECGKAFRYHCRLIRHKRVHSGERPYECSECGKFFRYSSNLIKHWRNHTGERPYECSECGKAFSHRHILVEHQKIHTGERPYECSKCQKAFIRKSHLVHHQKIHSEEDASAVIMGNSLDATSASLSREFTAVKAL", "length": 551, "header": "tr|A0A8D0K1Y5-1|A0A480V1U2_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110261312 PE=3 SV=1 CANONICAL=A0A480V1U2-1" }, "locus": { "chromosome": "6", "start_pos": 61826580, "end_pos": 61823473, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050968.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050968.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035853.3", "url": "https://www.ensembl.org/id/ENSSSCP00000035853.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZB9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MB53-1", "protein_name": "Zinc finger protein 548", "gene_name": "ZNF548", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAVVEMLMSPVQDCVVFEDVAVYFSQEEWGLLDETQRHLYHAVMTENLALVTSLGCCHGAQGEEASSEQGVSIGMSEVRTAKPDPSSRKAQPGDMCGPLSRDLLPLPEHDRMYPDEGLYVCGADLFQHQKEIRDKLCRRAEGQPSFVTNSSVHTGERTLTCSRDGKPFLGSTGLLQQLAPRGVGQPHGDTECQEAFGHEQSGYRCTQCGKAFSRKQILVEHQKIHTGVRPHECSICGMAFIRKFHLVQHQRIHTGERPFRCGECGKCFRYNSTLVSHQRVHTGLRPYECSKCGEFFKYNANFMKHQRKHNGERPFECRECGKFFRYNYRLIRHGRVHTGETPYKCIECGKFFRYSSTFIRHQRVHTAEKPYKCNECGKFFRYNSTLIKHQRVHTGERPYECSECGKFFRYTSTLIRHQRVHTVERPYECSLCGEYFKYKSKLIKHWQNHTGERPYECSECGKAFRYHCRLIRHKRVHSGERPYECSECGKFFRYNSNLIKHWRNHTGERPYECRECGKAFSHKHILVEHQKIHTGERPYECSRCHKAFIRKSHLVHHQKIHTEDTMSAVNVGNSLDTTPTS", "length": 581 }, "evidence": [ { "id": "A0A480V1U2", "url": "https://omabrowser.org/oma/group/A0A480V1U2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8NEK5-1", "protein_name": "Zinc finger protein 548", "gene_name": "ZNF548", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNLTEGRVVFEDVAIYFSQEEWGHLDEAQRLLYRDVMLENLALLSSLGSWHGAEDEEAPSQQGFSVGVSEVTASKPCLSSQKVHPSETCGPPLKDILCLVEHNGIHPEQHIYICEAELFQHPKQQIGENLSRGDDWIPSFGKNHRVHMAEEIFTCMEGWKDLPATSCLLQHQGPQSEWKPYRDTEDREAFQTGQNDYKCSECGKTFTCSYSFVEHQKIHTGERSYECNKCGKFFKYSANFMKHQTVHTSERTYECRECGKSFMYNYRLMRHKRVHTGERPYECNTCGKFFRYSSTFVRHQRVHTGERPYECRECGKFFMDSSTLIKHQRVHTGERPYKCNDCGKFFRYISTLIRHQRIHTGERPYECSVCGELFRYNSSLVKHWRNHTGERPYKCSECGKSFRYHCRLIRHQRVHTGERPYECSECGKFFRYNSNLIKHWRNHTGERPYECRECGKAFSHKHILVEHQKIHSGERPYECSECQKAFIRKSHLVHHQKIHSEERLVCSMNVGNSLAKTPTSLNIRDFTMEKVYH", "length": 533 }, "evidence": [ { "id": "A0A480V1U2", "url": "https://omabrowser.org/oma/group/A0A480V1U2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A480V1U2", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A480V1U2", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A480V1U2", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A480V1U2", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480V1U2", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A480V1U2", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A480V1U2", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A480V1U2", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 279, "end_pos": 281, "annotation": "n_glycosylation_sequon" }, { "start_pos": 392, "end_pos": 394, "annotation": "n_glycosylation_sequon" }, { "start_pos": 513, "end_pos": 515, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480V1U2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 211, "end_pos": 238, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A480V1U2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480V1U2" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 93, "start_aa": "Val", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 279, "end_pos": 281 }, { "start_pos": 392, "end_pos": 394 }, { "start_pos": 513, "end_pos": 515 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BRY3-1", "uniprot_ac": "A0A287BRY3", "uniprot_id": "A0A287BRY3_PIG", "mass": { "chemical_mass": 62777.0, "monoisotopic_mass": 62777.0 }, "refseq": { "ac": "XP_005666545", "name": "SH3 domain-binding protein 2 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666545" }, "gene_names": [ { "name": "SH3BP2", "type": "recommended", "evidence": [ { "id": "A0A287BRY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BRY3" } ] }, { "name": "SH3BP2", "type": "synonym", "evidence": [ { "id": "XP_005666545", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666545" } ] } ], "protein_names": [ { "name": "SH3 domain-binding protein 2", "type": "recommended", "evidence": [ { "id": "A0A287BRY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BRY3/entry#names_and_taxonomy" } ] }, { "name": "SH3 domain-binding protein 2 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_005666545", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666545" } ] } ], "function": [ { "annotation": "Binds differentially to the SH3 domains of certain proteins of signal transduction pathways. Binds to phosphatidylinositols; linking the hemopoietic tyrosine kinase fes to the cytoplasmic membrane in a phosphorylation dependent mechanism.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A695", "url": "https://www.uniprot.org/uniprotkb/A0A287A695#function" }, { "database": "UniProtKB", "id": "ARBA00056733", "url": "https://www.uniprot.org/uniprotkb/ARBA00056733#function" }, { "database": "UniProtKB", "id": "A0A287BRY3", "url": "https://www.uniprot.org/uniprotkb/A0A287BRY3#function" }, { "database": "UniProtKB", "id": "I3LCQ0", "url": "https://www.uniprot.org/uniprotkb/I3LCQ0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BRY3", "url": "https://www.uniprot.org/uniprotkb/A0A287BRY3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SH3BP2", "url": "https://www.uniprot.org/uniprotkb/A0A287BRY3", "locus": { "chromosome": "8", "start_pos": 1619037, "end_pos": 1583193, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022004", "url": "https://www.ensembl.org/id/ENSSSCG00000022004" } ] } } ], "crossref": [ { "id": "cd10359", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10359", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13308", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13308", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100626548", "url": "https://www.ncbi.nlm.nih.gov/gene/100626548", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035847", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035847", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035848", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035848", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QKPYGYT", "url": "https://omabrowser.org/oma/group/QKPYGYT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BRY3", "url": "https://www.orthodb.org/?gene=A0A287BRY3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15126", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15126", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15126:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15126:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005666545", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666545", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A695", "url": "https://www.uniprot.org/uniprotkb/A0A287A695", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A695-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A695-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRY3", "url": "https://www.uniprot.org/uniprotkb/A0A287BRY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LCQ0", "url": "https://www.uniprot.org/uniprotkb/I3LCQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LCQ0-1", "url": "https://www.uniprot.org/uniprotkb/I3LCQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAEEMHWPVPMKAIGAQNLLTMPGGVAKAGYLHKKGGTQLQLLRWPLRFVIIHKRCIYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSSNVFPFKIVHISKKHRTWFFSASSEEERKSWMAMLRREIGHFHEKKELPLDASDSSSDTDSFYGAIERPVDISLSPHPTDTEDYEHDDEDDSYLEPDSPEPVQPEDALIHPPAYPPPPVPTPRKPVFSDVPRAHSFTSKGPSPLLPPPPPKRGLPDACPPPEDSKRDLLGLRRAEPGPRVPPASRRMSDPPPGALPIMPGLRKTPCFHENASLSPEPRIPSHGASPASSSASTVSAASRNCDKLKSFHLSPRGPPTPEPPPVPANKPKFLKVVEEVPLREAAKPGLYVPPVAPRPPVLKLPTPETTARPTILPKPEKPHLPHLQRSPPDGQSFRSFSFEKPRQPLPADSSLADAGREDSDEDYEKVPLPSSVFINTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSSKVRNYRIFEKDSKFYLEGEVLFVSVGSLVEHYHTHVLPGHQSLLLRHPYGYARPR", "length": 566, "header": "tr|A0A287BRY3-1|A0A287BRY3_PIG Isoform 1 of SH3 domain-binding protein 2 OS=Sus scrofa OX=9823 GN=SH3BP2 PE=4 SV=1 CANONICAL=A0A287BRY3-1" }, "isoforms": [ { "isoform_ac": "A0A287A695-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRY3/entry#A0A287A695-1", "sequence": { "sequence": "MAGAGLRPRGWGRREVGAGGEAAAGARGPEPCLCAQGRRARAAPRNPAVPAAWTPFMAAEEMHWPVPMKAIGAQNLLTMPGGVAKAGYLHKKGGTQLQLLRWPLRFVIIHKRCIYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSSNVFPFKIVHISKKHRTWFFSASSEEERKSWMAMLRREIGHFHEKKELPLDASDSSSDTDSFYGAIERPVDISLSPHPTDTEDYEHDDEDDSYLEPDSPEPVQPEDALIHPPAYPPPPVPTPRKPVFSDVPRAHSFTSKGPSPLLPPPPPKRGLPDACPPPEDSKRDLLGLRRAEPGPRVPPASRRMSDPPPGALPIMPGLRKTPCFHENASLSPEPRIPSHGASPASSSASTVSAASRNCDKLKSFHLSPRGPPTPEPPPVPANKPKFLKVVEEVPLREAAKPGLYVPPVAPRPPVLKLPTPETTARPTILPKPEKPHLPHLQRSPPDGQSFRSFSFEKPRQPLPADSSLADAGREDSDEDYEKVPLPSSVFINTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSSKVRNYRIFEKDSKFYLEGEVLFVSVGSLVEHYHTHVLPGHQSLLLRHPYGYARPR", "length": 622, "header": "tr|A0A287A695-1|A0A287BRY3_PIG Computationally mapped isoform of SH3 domain-binding protein 2 OS=Sus scrofa OX=9823 GN=SH3BP2 PE=4 SV=1 CANONICAL=A0A287BRY3-1" }, "locus": { "chromosome": "8", "start_pos": 1618611, "end_pos": 1606692, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046373.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046373.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039288.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039288.2" } ] } }, { "isoform_ac": "A0A287BRY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRY3/entry#A0A287BRY3-1", "sequence": { "sequence": "MAAEEMHWPVPMKAIGAQNLLTMPGGVAKAGYLHKKGGTQLQLLRWPLRFVIIHKRCIYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSSNVFPFKIVHISKKHRTWFFSASSEEERKSWMAMLRREIGHFHEKKELPLDASDSSSDTDSFYGAIERPVDISLSPHPTDTEDYEHDDEDDSYLEPDSPEPVQPEDALIHPPAYPPPPVPTPRKPVFSDVPRAHSFTSKGPSPLLPPPPPKRGLPDACPPPEDSKRDLLGLRRAEPGPRVPPASRRMSDPPPGALPIMPGLRKTPCFHENASLSPEPRIPSHGASPASSSASTVSAASRNCDKLKSFHLSPRGPPTPEPPPVPANKPKFLKVVEEVPLREAAKPGLYVPPVAPRPPVLKLPTPETTARPTILPKPEKPHLPHLQRSPPDGQSFRSFSFEKPRQPLPADSSLADAGREDSDEDYEKVPLPSSVFINTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSSKVRNYRIFEKDSKFYLEGEVLFVSVGSLVEHYHTHVLPGHQSLLLRHPYGYARPR", "length": 566, "header": "tr|A0A287BRY3-1|A0A287BRY3_PIG Isoform 1 of SH3 domain-binding protein 2 OS=Sus scrofa OX=9823 GN=SH3BP2 PE=4 SV=1 CANONICAL=A0A287BRY3-1" }, "locus": { "chromosome": "8", "start_pos": 1618611, "end_pos": 1608524, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049780.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049780.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036752.1", "url": "https://www.ensembl.org/id/ENSSSCP00000036752.1" } ] } }, { "isoform_ac": "I3LCQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRY3/entry#I3LCQ0-1", "sequence": { "sequence": "MAFPGPRTPASNRPGRKRAMCWVSATSFMAAEEMHWPVPMKAIGAQNLLTMPGGVAKAGYLHKKGGTQLQLLRWPLRFVIIHKRCIYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSSNVFPFKIVHISKKHRTWFFSASSEEERKSWMAMLRREIGHFHEKKELPLDASDSSSDTDSFYGAIERPVDISLSPHPTDTEDYEHDDEDDSYLEPDSPEPVQPEDALIHPPAYPPPPVPTPRKPVFSDVPRAHSFTSKGPSPLLPPPPPKRGLPDACPPPEDSKRDLLGLRRAEPGPRVPPASRRMSDPPPGALPIMPGLRKTPCFHENASLSPEPRIPSHGASPASSSASTVSAASRNCDKLKSFHLSPRGPPTPEPPPVPANKPKFLKVVEEVPLREAAKPGLYVPPVAPRPPVLKLPTPETTARPTILPKPEKPHLPHLQRSPPDGQSFRSFSFEKPRQPLPADSSLADAGREDSDEDYEKVPLPSSVFINTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSSKVRNYRIFEKDSKFYLEGEVLFVSVGSLVEHYHTHVLPGHQSLLLRHPYGYARPR", "length": 594, "header": "tr|I3LCQ0-1|A0A287BRY3_PIG Computationally mapped isoform of SH3 domain-binding protein 2 OS=Sus scrofa OX=9823 GN=SH3BP2 PE=4 SV=2 CANONICAL=A0A287BRY3-1" }, "locus": { "chromosome": "8", "start_pos": 1618611, "end_pos": 1601341, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022955.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022955.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021827.2", "url": "https://www.ensembl.org/id/ENSSSCP00000021827.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 211, "start_aa": "Thr", "end_pos": 211, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr211", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 346, "start_aa": "Thr", "end_pos": 346, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr346", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LCQ0", "url": "https://www.uniprot.org/uniprotkb/I3LCQ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MQW9-1", "protein_name": "SH3 domain-binding protein 2", "gene_name": "SH3BP2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGAGPWPRAWSRREAGSGAEAAAGARGPGPCRCAQGKRVRAAPPIPAGPAAWTSFMAAEETHWPVPMKAIGAQNLLTMPGGVAKAGYLHKKGGTQLQLLKWPLRFVVIHKRCIYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSNNVFPFKIIHVSKKHRTWFFSASSEDERKSWMALLRKEIGHFQEKKELPLDASDSSSDTDSFYGAIERPVDISLSPHPTDSEDYEHDDEDDSYLEPDSPEPGRPEDPLIHPPAYPPPPVPTPRKPVFSEVPRAHSFTSKGPGPLLPPPPPKRGLPDTGPAPEDSRREPPPLRWVEPGSRVPAVSRRMSDPPSNILPPGPGLRKAPCFPENSSPSLEPRIPAHGVSPSSTATAASRNCDKLKSFHLSPRGTPAPEPPPVPANKPKFLKMVEESPPGEAARPGSRVPPVAPRPPPLKLPMPEAADRPPVLPRPEKPALPHLQRSPPDGQSFRSFSFEKPRKPVQTDTSQADAGGEGSDDDYEKVPLPSSVFINTTESCEVERLFKATSPRGVPQDGLYCIRNSSTKSGKVLVVWDETSSKVRNYRIFEKDSKFYLEGEVLFVGVGSLVEHYHTHVLPGHQSLLLQHPYGYARPR", "length": 618 }, "evidence": [ { "id": "A0A287BRY3", "url": "https://omabrowser.org/oma/group/A0A287BRY3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8I6A9V6-1", "protein_name": "SH3 domain-binding protein 2", "gene_name": "Sh3bp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGSGSRPRSWGWRETGSRDEAASGGPGSGQCRCSQGRRALAAPRKPAVPAAWTPFMEAEEMHWPVPMKAIGAQNLLTMPGGVAKAGYLHKKGGTQLQLLKWPLRFVIIHQRCIYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSNNVFPFKIIHISKKHRTWFFSASSEDERKSWMAMLRREIGHFHEKKELPLDTSDSSSDTDSFYGAVERPIDISLSSYPTDNEDYEHEDEEDSYLEPDSPGPMKLEDALTYPPAYPPPPVPVPRKPTFSDLPRAHSFTSKSPSPLLPPPPPKRGLMDTGPAPEDAKKDPLGLRRVEPSLRVPATPRRMSDPPVSNVPTVPNLRKHPCFRDSANPGPEPWTPGHGTSSVSSSTTMAITTSRNCDKLKSFHLSSRGPPASEPPPVPANKPKFLKIVEEASPREAAKSAPVPPVAPRPPVQKMSMPEVTVRPAVLPRPEKTPLPHLQRSPPDGQSFRGFSFEKARQPSQADTGEEDSDEDYEKVPLPNSVFVNTTESCEVERLFKATNPLGEPQDGLYCIRNSSTKSGKVLVVWDESSNKVRNYRIFEKDSKFYLEGEVLFASVGSMVEHYHTHVLPSHQSLLLRHPYGYAGPR", "length": 616 }, "evidence": [ { "id": "A0A287BRY3", "url": "https://omabrowser.org/oma/group/A0A287BRY3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0YUI4-1", "protein_name": "SH3 domain-binding protein 2", "gene_name": "SH3BP2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEFVAETYGKVQVMEKSVWFPASPACKHQVPAATPLDQHQEAELQFLCVNRSDEVLPRNNKEIKPIWGNCWNGKPERLLWGRSVLTGWVISLLLRLPYLADEVFRKMASEEQVWPVPMKAIGAQNLLTMPGGVTKSGYLHKKGGTQLQILKWPLRFVIIHEGCIYYFKTSTSASPQGAFSLNGYNRVMRAAEETTSSNVFPFKLVHISKKHRTWFFSASSEDERKNWMLSLRREIDHYHDKKETVTEFSDSGSDADSFYGSVERPIDIKYSHHSADNEDYDQEEDDESYLQPDTSDIVKDDFMVLPPAYPPPPVPHVRKAAYSESRSHSFSGKTAGSTPPPPPPKRSLPEIKTEDFFGVREPQLPCRAEPNLKIQSSSRRPSEQPPPVPPLPLFKKPFCVKEPSSLPPELPLSHVLTTTEGCEKLKTLNLSPRTPPPLPSNKPKLSQITEKTVENKVPREHGKPGLFVPPVLPKPPVPGHQHSVLKPRPEKPSCPQLQRSPPDGQSFRSFSFEKPALPSKPNQVNDDSDDDYEKVELPTSIFLNTSESLEVERIFKATSPKGQPQNGLYCIRNSSTKAGKVLVVWDQSAEKVRNYRIFEKDCKFYLDADIMFLNMGSLVEYYSTHVLPSHGSLILRCPYGYSKPR", "length": 645 }, "evidence": [ { "id": "A0A287BRY3", "url": "https://omabrowser.org/oma/group/A0A287BRY3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P78314-1", "protein_name": "SH3 domain-binding protein 2", "gene_name": "SH3BP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAEEMHWPVPMKAIGAQNLLTMPGGVAKAGYLHKKGGTQLQLLKWPLRFVIIHKRCVYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSNNVFPFKIIHISKKHRTWFFSASSEEERKSWMALLRREIGHFHEKKDLPLDTSDSSSDTDSFYGAVERPVDISLSPYPTDNEDYEHDDEDDSYLEPDSPEPGRLEDALMHPPAYPPPPVPTPRKPAFSDMPRAHSFTSKGPGPLLPPPPPKHGLPDVGLAAEDSKRDPLCPRRAEPCPRVPATPRRMSDPPLSTMPTAPGLRKPPCFRESASPSPEPWTPGHGACSTSSAAIMATATSRNCDKLKSFHLSPRGPPTSEPPPVPANKPKFLKIAEEDPPREAAMPGLFVPPVAPRPPALKLPVPEAMARPAVLPRPEKPQLPHLQRSPPDGQSFRSFSFEKPRQPSQADTGGDDSDEDYEKVPLPNSVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRIFEKDSKFYLEGEVLFVSVGSMVEHYHTHVLPSHQSLLLRHPYGYTGPR", "length": 561 }, "evidence": [ { "id": "A0A287BRY3", "url": "https://omabrowser.org/oma/group/A0A287BRY3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q06649-1", "protein_name": "SH3 domain-binding protein 2", "gene_name": "Sh3bp2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAEEMQWPVPMKAIGAQNLLTMPGGVAKAGYLHKKGGTQLQLLKWPLRFVIIHKRCIYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSNNVFPFKIIHISKKHRTWFFSASSEDERKSWMAFVRREIGHFHEKKELPLDTSDSSSDTDSFYGAVERPIDISLSSYPMDNEDYEHEDEDDSYLEPDSPGPMKLEDALTYPPAYPPPPVPVPRKPAFSDLPRAHSFTSKSPSPLLPPPPPKRGLPDTGSAPEDAKDALGLRRVEPGLRVPATPRRMSDPPMSNVPTVPNLRKHPCFRDSVNPGLEPWTPGHGTSSVSSSTTMAVATSRNCDKLKSFHLSSRGPPTSEPPPVPANKPKFLKIAEEPSPREAAKFAPVPPVAPRPPVQKMPMPEATVRPAVLPRPENTPLPHLQRSPPDGQSFRGFSFEKARQPSQADTGEEDSDEDYEKVPLPNSVFVNTTESCEVERLFKATDPRGEPQDGLYCIRNSSTKSGKVLVVWDESSNKVRNYRIFEKDSKFYLEGEVLFASVGSMVEHYHTHVLPSHQSLLLRHPYGYAGPR", "length": 559 }, "evidence": [ { "id": "A0A287BRY3", "url": "https://omabrowser.org/oma/group/A0A287BRY3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phosphotyrosine residue binding", "id": "GO:0001784", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001784", "evidence": [ { "database": "UniProtKB", 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480XDE4-1", "uniprot_ac": "A0A480XDE4", "uniprot_id": "A0A480XDE4_PIG", "mass": { "chemical_mass": 20994.0, "monoisotopic_mass": 20994.0 }, "refseq": { "ac": "XP_003129004", "name": "COMM domain-containing protein 8 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129004" }, "gene_names": [ { "name": "COMMD8", "type": "recommended", "evidence": [ { "id": "A0A480XDE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480XDE4" } ] }, { "name": "COMMD8", "type": "synonym", "evidence": [ { "id": "XP_003129004", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129004" } ] } ], "protein_names": [ { "name": "COMM domain containing 8", "type": "synonym", "evidence": [ { "id": "A0A480XDE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480XDE4/entry#names_and_taxonomy" } ] }, { "name": "COMM domain-containing protein 8 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_003129004", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129004" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480XDE4", "url": "https://www.uniprot.org/uniprotkb/A0A480XDE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COMMD8", "url": "https://www.uniprot.org/uniprotkb/A0A480XDE4", "locus": { "chromosome": "8", "start_pos": 37334476, "end_pos": 37380253, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033373", "url": "https://www.ensembl.org/id/ENSSSCG00000033373" } ] } } ], "crossref": [ { "id": "ENSSSCG00000033373", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033373", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04756", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04756", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518136", "url": "https://www.ncbi.nlm.nih.gov/gene/100518136", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR017920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047155", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047155", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047235", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047235", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055184", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055184", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518136", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518136", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KLCHRVV", "url": "https://omabrowser.org/oma/group/KLCHRVV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480XDE4", "url": "https://www.orthodb.org/?gene=A0A480XDE4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16231", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16231", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16231:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16231:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07258", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07258", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22838", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22838", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003129004", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129004", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A6I5", "url": "https://www.uniprot.org/uniprotkb/A0A287A6I5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A6I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6I5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BS53", "url": "https://www.uniprot.org/uniprotkb/A0A287BS53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BS53-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS53-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480XDE4", "url": "https://www.uniprot.org/uniprotkb/A0A480XDE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480XDE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XDE4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPEEGTPLWRLQKLPAELGPQLLHKIIDGFCGRTYPLYKDYQSVWDSTEWMHVLEDITEFFKAVVGKNLTDEEISQQLNQLNSSHQEAIMKCLKSRKDEIKQALLEEIVGISSAQLQDFDWQLKLALSSDKIATLQMPLLNLHLDVKENGEVKPYSVEMSKEELQNLINSLEAANKVVLQLK", "length": 183, "header": "tr|A0A480XDE4-1|A0A480XDE4_PIG Isoform 1 of COMM domain containing 8 OS=Sus scrofa OX=9823 GN=COMMD8 PE=1 SV=1 CANONICAL=A0A480XDE4-1" }, "isoforms": [ { "isoform_ac": "A0A287A6I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XDE4/entry#A0A287A6I5-1", "sequence": { "sequence": "MEPEEGTPLWRLQKLPAELGPQLLHKIIDGFCGRTYPLYKDYQSVWDSTEWMHVLEDITEFFKAVVGKNLTDEEISQQLNQLNSSHQEAIMKCLKSRKDEIKQALLEEIVGISSAQLQDFDWQLKLALSSDKIATLQMPLLNLHLDVKENGEVKPYSVEMSKEELQNLINSLEAANKLLTGAVLSW", "length": 186, "header": "tr|A0A287A6I5-1|A0A480XDE4_PIG Computationally mapped isoform of COMM domain containing 8 OS=Sus scrofa OX=9823 GN=COMMD8 PE=1 SV=2 CANONICAL=A0A480XDE4-1" }, "locus": { "chromosome": "8", "start_pos": 37380241, "end_pos": 37356626, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048831.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048831.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039375.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039375.2" } ] } }, { "isoform_ac": "A0A287BS53-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XDE4/entry#A0A287BS53-1", "sequence": { "sequence": "MEPEEGTPLWRLQKLPAELGPQLLHKIIDGFCGRTYPLYKDYQSVWDSTEWMHVLEDITEFFKAVVGKNLTDEEISQQLNQLNSSHQEAIMKCLKSRKDEIKQALLEEIVGISSAQLQDFDWQLKLALSSDKIATLQMPLLNLHLDVKENGEVKPYSVEMSKEELQNLINSLEAANKLPFSEGLSQRRCNLQRHIPAEPGTQTQSSPSGSWRFPG", "length": 215, "header": "tr|A0A287BS53-1|A0A287BS53_PIG Computationally mapped isoform of COMM domain containing 8 OS=Sus scrofa OX=9823 GN=COMMD8 PE=1 SV=2 CANONICAL=A0A480XDE4-1" }, "locus": { "chromosome": "8", "start_pos": 37380241, "end_pos": 37335480, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040940.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040940.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059349.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059349.2" } ] } }, { "isoform_ac": "A0A480XDE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XDE4/entry#A0A480XDE4-1", "sequence": { "sequence": "MEPEEGTPLWRLQKLPAELGPQLLHKIIDGFCGRTYPLYKDYQSVWDSTEWMHVLEDITEFFKAVVGKNLTDEEISQQLNQLNSSHQEAIMKCLKSRKDEIKQALLEEIVGISSAQLQDFDWQLKLALSSDKIATLQMPLLNLHLDVKENGEVKPYSVEMSKEELQNLINSLEAANKVVLQLK", "length": 183, "header": "tr|A0A480XDE4-1|A0A480XDE4_PIG Isoform 1 of COMM domain containing 8 OS=Sus scrofa OX=9823 GN=COMMD8 PE=1 SV=1 CANONICAL=A0A480XDE4-1" }, "locus": { "chromosome": "8", "start_pos": 37380241, "end_pos": 37370773, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076851.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076851.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063248.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063248.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6I5", "url": "https://www.uniprot.org/uniprotkb/A0A287A6I5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518136", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518136", "resource": "KEGG Pathway" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7EZP4-1", "protein_name": "COMM domain-containing protein 8", "gene_name": "Commd8", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEAEDGTPPLWRLQKLPPEQGPPLLHKIIDGMCGRAYPAYHDYHSVWDLTEWKHVLEDVTMFFKAVVGKNFSDEETLQQLNQLNSCHQEAVMKCLKSRKNEIKQALLGEIVDISCAQLKDFDWQLKLALSSDKIATLQMPLLNLHLDVKENGEVKPYSVEMSKEELQSLISSLEAANKVVLQLK", "length": 184 }, "evidence": [ { "id": "A0A480XDE4", "url": "https://omabrowser.org/oma/group/A0A480XDE4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9S8U8-1", "protein_name": "COMM domain containing 8", "gene_name": "COMMD8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPEEGTPLWRLQKLPAERGLQLLHKIIDGICGRTYPLYQDYHSVWDSTEWMHVLEDITTFFKAVVGKNLSDEEISQQLNQLNSSHQEAIMKCLKSRKDEIKKTLLEEIVDISSARLQDFDWQIKLALSSDKIASLQMPLLNLYLDVKENGEVKPYSVEMSKEELQKLINSLEAANKVVLQLK", "length": 183 }, "evidence": [ { "id": "A0A480XDE4", "url": "https://omabrowser.org/oma/group/A0A480XDE4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "B0K015-1", "protein_name": "COMM domain containing 8", "gene_name": "Commd8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRRGRDDYSWDPGDRMAAKEIYAGLGMAQAWLLHKIIDGICGRAYPAHQDYHSVWNSTEWKHVLEDVTTFFKAVVGKNFSEEETLQQLNQLNSCHQEAVMKCLKSRKNEIKQALLGEIVDISCAQLQDFDWQLKLALSSDKIATLQMPLLNLHLDVKEDGEVKPYSVEMSKEELQSLISSLEAANKVVLQLK", "length": 193 }, "evidence": [ { "id": "A0A480XDE4", "url": "https://omabrowser.org/oma/group/A0A480XDE4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9CZG3-1", "protein_name": "COMM domain-containing protein 8", "gene_name": "Commd8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPEEGTPLWRLQKLPPEQGAGLLHKIIDGFCGRAYPAHQDYHSVWNSAEWKHVLEDVTTFFKAVVGKNFSEEETLQQLNQLNSCHQEAVLKCLKSRRNEIKQALLGEIVDISCAQLQDFDWQLKLALSSDKIATLQMPLLNLHLDVKEDDKVKPYTVEMSKEELQSLISSLEAANKVVLQLK", "length": 183 }, "evidence": [ { "id": "A0A480XDE4", "url": "https://omabrowser.org/oma/group/A0A480XDE4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NX08-1", "protein_name": "COMM domain-containing protein 8", "gene_name": "COMMD8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPEEGTPLWRLQKLPAELGPQLLHKIIDGICGRAYPVYQDYHTVWESEEWMHVLEDIAKFFKAIVGKNLPDEEIFQQLNQLNSLHQETIMKCVKSRKDEIKQALSREIVAISSAQLQDFDWQVKLALSSDKIAALRMPLLSLHLDVKENGEVKPYSIEMSREELQNLIQSLEAANKVVLQLK", "length": 183 }, "evidence": [ { "id": "A0A480XDE4", "url": "https://omabrowser.org/oma/group/A0A480XDE4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "R4GIV5-1", "protein_name": "COMM domain containing 8", "gene_name": "COMMD8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLQLLEKLPPGRALEFLHNIVDGICGRGYPRYQDYSGVWSLAEWMEVLEETRTYFKTAVGKNVTDEEAVQQMNELNANYQEAIIKCLKARKEEIRNALVETVNAISSAQLQDFDWQLKLALSSDKISMLQMPLLNLDLDVRENGEIKPISIEMNKEELQNLINALEAANKIVLQLK", "length": 176 }, "evidence": [ { "id": "A0A480XDE4", "url": "https://omabrowser.org/oma/group/A0A480XDE4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A480XDE4", "url": "https://www.uniprot.org/uniprotkb/A0A480XDE4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A480XDE4", "url": "https://www.uniprot.org/uniprotkb/A0A480XDE4" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A480XDE4", "url": "https://www.uniprot.org/uniprotkb/A0A480XDE4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A480XDE4", "url": "https://www.uniprot.org/uniprotkb/A0A480XDE4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "NF-kappaB binding", "id": "GO:0051059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051059", "evidence": [ { "database": "UniProtKB", "id": "A0A480XDE4", "url": "https://www.uniprot.org/uniprotkb/A0A480XDE4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 69, "end_pos": 71, "annotation": "n_glycosylation_sequon" }, { "start_pos": 83, "end_pos": 85, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480XDE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480XDE4" }, { "id": "PS51269", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51269" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "COMM", "eco_id": "ECO_0000259", "start_pos": 116, "end_pos": 183, "start_aa": "Gln", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 69, "end_pos": 71 }, { "start_pos": 83, "end_pos": 85 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480QLP9-1", "uniprot_ac": "A0A480QLP9", "uniprot_id": "A0A480QLP9_PIG", "mass": { "chemical_mass": 88806.0, "monoisotopic_mass": 88806.0 }, "refseq": { "ac": "XP_020926853", "name": "inactive N-acetylated-alpha-linked acidic dipeptidase-like protein 2 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926853" }, "gene_names": [ { "name": "NAALADL2", "type": "recommended", "evidence": [ { "id": "A0A480QLP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QLP9" } ] }, { "name": "NAALADL2", "type": "synonym", "evidence": [ { "id": "XP_020926853", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926853" } ] } ], "protein_names": [ { "name": "N-acetylated alpha-linked acidic dipeptidase like 2", "type": "synonym", "evidence": [ { "id": "A0A480QLP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QLP9/entry#names_and_taxonomy" } ] }, { "name": "inactive N-acetylated-alpha-linked acidic dipeptidase-like protein 2 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_020926853", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926853" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480QLP9", "url": "https://www.uniprot.org/uniprotkb/A0A480QLP9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NAALADL2", "url": "https://www.uniprot.org/uniprotkb/A0A480QLP9", "locus": { "chromosome": "13", "start_pos": 114208075, "end_pos": 113236156, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023871", "url": "https://www.ensembl.org/id/ENSSSCG00000023871" } ] } } ], "crossref": [ { "id": "ENSSSCG00000023871", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023871", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03874", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03874", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522279", "url": "https://www.ncbi.nlm.nih.gov/gene/100522279", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR036757", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036757", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039373", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039373", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046450", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046450", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GYYAHKK", "url": "https://omabrowser.org/oma/group/GYYAHKK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10404", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10404", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10404:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10404:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_020926853", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926853", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A8H5", "url": "https://www.uniprot.org/uniprotkb/A0A287A8H5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8H5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5L4", "url": "https://www.uniprot.org/uniprotkb/A0A287B5L4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5L4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5L4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480QLP9", "url": "https://www.uniprot.org/uniprotkb/A0A480QLP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480QLP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QLP9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKW2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKW2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKW2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8X9AER2", "url": "https://www.uniprot.org/uniprotkb/A0A8X9AER2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8X9AER2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8X9AER2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LMQ6", "url": "https://www.uniprot.org/uniprotkb/I3LMQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LMQ6-1", "url": "https://www.uniprot.org/uniprotkb/I3LMQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGENEASLPNTALQGKKMAYQKVNADQRAPGHSQYLDNDDLQATALDLEWDMEKELEEPGFDQFQLDSAENQNLEHAETADLNLDSIQPATSPKGRFQRLQEESDYITHYARSAPKSNPCNFCRLLKIFCTAIILFIFGILIGYYAHKNCPSNATSSGTLDLQLYQEILKTIQAEDIKKSFRNLIQLYKSEDDMEISKKIKIQWTSLGLEDVQFVNYSVLLNLPGPAPSSVTLSSSGQCFHPDGQPCSEEARKHSSQDLLYSYAAYSAKGTLKAEVIDVSYGNADDLKRIKKMKNVTNRIALLKLGRLPLLYKLSLLEKAGFGGVLLYIDPCDLPKTTNLSYDTFMVSLNPGGDPSTPGYPSIDGSFRQNRSNLTSLLVQPVSASLIAKLISSPKATTTNNACTPLELPNNEERIVNMQIQTVTKFKTVTNVVGYLKGLTSPDRYILVGSRHHTAYSYNGQEWASSTAIITAFIRALMLRVKRGWRPDRTIVFCSWGGTAFGNIGSYEWGEDFKKVLQRNVVAYVSLHSPIRGNSSLYSVASPSLQQLVAEKNNFNCSRRGQCPETNVSSVQMQDDADYFINHLGIPTVRFSYEDSQLSEGPSFLFEALFPKHTTKIEELDPFFNLHETITKLSGEVILQIANEPVLPFNALDIALEVQNSLKGDQPNTPQLLAPASRLRESTELFQSDEMRPANDPKERAPIRVRMLNDILQDMEKSFLVQHAPPGFYRNILYHLDGKTSQFSILLEAWEHCKSLASNETLQEALSEVLNSINAAQVYFKAGLDVFESILVGKN", "length": 795, "header": "tr|A0A480QLP9-1|A0A480QLP9_PIG Isoform 1 of N-acetylated alpha-linked acidic dipeptidase like 2 OS=Sus scrofa OX=9823 GN=NAALADL2 PE=1 SV=1 CANONICAL=A0A480QLP9-1" }, "isoforms": [ { "isoform_ac": "A0A287A8H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QLP9/entry#A0A287A8H5-1", "sequence": { "sequence": "MAYQKVNADQRAPGHSQYLDNDDLQATALDLEWDMEKELEEPGFDQFQLDSAENQNLEHAETADLNLDSIQPATSPKGRFQRLQEESDYITHYARSAPKSNPCNFCRLLKIFCTAIILFIFGILIGYYAHKNCPSNATSSGTLDLQLYQEILKTIQAEDIKKSFRNLIQLYKSEDDMEISKKIKIQWTSLGLEDVQFVNYSVLLNLPGPAPSSVTLSSSGQCFHPDGQPCSEEARKHSSQDLLYSYAAYSAKGTLKAEVIDVSYGNADDLKRIKKMKNVTNRIALLKLGRLPLLYKLSLLEKAGFGGVLLYIDPCDLPKTTNLSYDTFMVSLNPGGDPSTPGYPSIDGSFRQNRSNLTSLLVQPVSASLIAKLISSPKATTTNNACTPLELPNNEERIVNMQIQTVTKFKTVTNVVGYLKGLTSPDRYILVGSRHHTAYSYNGQEWASSTAIITAFIRALMLRVKRGWRPDRTIVFCSWGGTAFGNIGSYEWGEDFKKVLQRNVVAYVSLHSPIRGNSSLYSVASPSLQQLVAEGPSFLFEALFPKHTTKIEELDPFFNLHETITKLSGEVILQIANEPVLPFNALDIALEVQNSLKGDQPNTPQLLAPASRLRESTELFQSDEMRPANDPKERAPIRVRMLNDILQDMEKSFLVQHAPPGFYRNILYHLDGKTSQFSILLEAWEHCKSLASNETLQEALSEVLNSINAAQVYFKAGLDVFESILVGKN", "length": 729, "header": "tr|A0A287A8H5-1|A0A480QLP9_PIG Computationally mapped isoform of N-acetylated alpha-linked acidic dipeptidase like 2 OS=Sus scrofa OX=9823 GN=NAALADL2 PE=1 SV=1 CANONICAL=A0A480QLP9-1" }, "locus": { "chromosome": "13", "start_pos": 114207498, "end_pos": 113467687, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041241.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041241.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040091.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040091.1" } ] } }, { "isoform_ac": "A0A287B5L4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QLP9/entry#A0A287B5L4-1", "sequence": { "sequence": "MAYQKVNADQRAPGHSQYLDNDDLQATALDLEWDMEKELEEPGFDQFQLDSAENQNLEHAETADLNLDSIQPATSPKGRFQRLQEESDYITHYARSAPKSNPCNFCRLLKIFCTAIILFIFGILIGYYAHKNCPSNATSSGTLDLQLYQEILKTIQAEDIKKSFRNLIQLYKSEDDMEISKKIKIQWTSLGLEDVQFVNYSVLLNLPGPAPSSVTLSSSGQCFHPDGQPCSEEARKHSSQDLLYSYAAYSAKGTLKAEVIDVSYGNADDLKRIKKMKNVTNRIALLKLGRLPLLYKLSLLEKAGFGGVLLYIDPCDLPKTTNLSYDTFMVSLNPGGDPSTPGYPSIDGSFRQNRSNLTSLLVQPVSASLIAKLISSPKATTTNNACTPLELPNNEERIVNMQIQTVTKFKTVTNVVGYLKGLTSPDRYILVGSRHHTAYSYNGQEWASSTAIITAFIRALMLRVKRGWRPDRTIVFCSWGGTAFGNIGSYEWGEDFKKVLQRNVVAYVSLHSPIRGNSSLYSVASPSLQQLVAEKNNFNCSRRGQCPETNVSSVQMQDDADYFINHLGIPTVRFSYEDSQLSELSGEVILQIANEPVLPFNALDIALEVQNSLKGDQPNTPQLLAPASRLRESTELFQSDEMRPANDPKERAPIRVRMLNDILQDMEKSFLVQHAPPGFYRNILYHLDGKTSQFSILLEAWEHCKSLASNETLQEALSEVLNSINAAQVYFKAGLDVFESILVGKN", "length": 746, "header": "tr|A0A287B5L4-1|A0A480QLP9_PIG Computationally mapped isoform of N-acetylated alpha-linked acidic dipeptidase like 2 OS=Sus scrofa OX=9823 GN=NAALADL2 PE=1 SV=1 CANONICAL=A0A480QLP9-1" }, "locus": { "chromosome": "13", "start_pos": 114207498, "end_pos": 113467687, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041515.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041515.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051388.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051388.1" } ] } }, { "isoform_ac": "A0A480QLP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QLP9/entry#A0A480QLP9-1", "sequence": { "sequence": "MGENEASLPNTALQGKKMAYQKVNADQRAPGHSQYLDNDDLQATALDLEWDMEKELEEPGFDQFQLDSAENQNLEHAETADLNLDSIQPATSPKGRFQRLQEESDYITHYARSAPKSNPCNFCRLLKIFCTAIILFIFGILIGYYAHKNCPSNATSSGTLDLQLYQEILKTIQAEDIKKSFRNLIQLYKSEDDMEISKKIKIQWTSLGLEDVQFVNYSVLLNLPGPAPSSVTLSSSGQCFHPDGQPCSEEARKHSSQDLLYSYAAYSAKGTLKAEVIDVSYGNADDLKRIKKMKNVTNRIALLKLGRLPLLYKLSLLEKAGFGGVLLYIDPCDLPKTTNLSYDTFMVSLNPGGDPSTPGYPSIDGSFRQNRSNLTSLLVQPVSASLIAKLISSPKATTTNNACTPLELPNNEERIVNMQIQTVTKFKTVTNVVGYLKGLTSPDRYILVGSRHHTAYSYNGQEWASSTAIITAFIRALMLRVKRGWRPDRTIVFCSWGGTAFGNIGSYEWGEDFKKVLQRNVVAYVSLHSPIRGNSSLYSVASPSLQQLVAEKNNFNCSRRGQCPETNVSSVQMQDDADYFINHLGIPTVRFSYEDSQLSEGPSFLFEALFPKHTTKIEELDPFFNLHETITKLSGEVILQIANEPVLPFNALDIALEVQNSLKGDQPNTPQLLAPASRLRESTELFQSDEMRPANDPKERAPIRVRMLNDILQDMEKSFLVQHAPPGFYRNILYHLDGKTSQFSILLEAWEHCKSLASNETLQEALSEVLNSINAAQVYFKAGLDVFESILVGKN", "length": 795, "header": "tr|A0A480QLP9-1|A0A480QLP9_PIG Isoform 1 of N-acetylated alpha-linked acidic dipeptidase like 2 OS=Sus scrofa OX=9823 GN=NAALADL2 PE=1 SV=1 CANONICAL=A0A480QLP9-1" }, "locus": { "chromosome": "13", "start_pos": 114207498, "end_pos": 113236355, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062119.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062119.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055424.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055424.2" } ] } }, { "isoform_ac": "A0A5G2QKW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QLP9/entry#A0A5G2QKW2-1", "sequence": { "sequence": "MAYQKVNADQRAPGHSQYLDNDDLQATALDLEWDMEKELEEPGFDQFQLDSAENQNLEHAETADLNLDSIQPATSPKGRFQRLQEESDYITHYARSAPKSNPCNFCRLLKIFCTAIILFIFGILIGYYAHKNCPSNATSSGTLDLQLYQEILKTIQAEDIKKSFRNLIQLYKSEDDMEISKKIKIQWTSLGLEDVQFVNYSVLLNLPGPAPSSVTLSSSGQCFHPDGQPCSEEARKHSSQDLLYSYAAYSAKGTLKAEVIDVSYGNADDLKRIKKMKNVTNRIALLKLGRLPLLYKLSLLEKAGFGGVLLYIDPCDLPKTTNLSYDTFMVSLNPGGDPSTPGYPSIDGSFRQNRSNLTSLLVQPVSASLIAKLISSPKATTTNNACTPLELPNNDRYILVGSRHHTAYSYNGQEWASSTAIITAFIRALMLRVKRGWRPDRTIVFCSWGGTAFGNIGSYEWGEDFKKVLQRNVVAYVSLHSPIRGNSSLYSVASPSLQQLVAEKNNFNCSRRGQCPETNVSSVQMQDDADYFINHLGIPTVRFSYEDSQLSEGPSFLFEALFPKHTTKIEELDPFFNLHETITKLSGEVILQIANEPVLPFNALDIALEVQNSLKGDQPNTPQLLAPASRLRESTELFQSDEMRPANDPKERAPIRVRMLNDILQDMEKSFLVQHAPPGFYRNILYHLDGKTSQFSILLEAWEHCKSLASNETLQEALSEVLNSINAAQVYFKAGLDVFESILVGKN", "length": 747, "header": "tr|A0A5G2QKW2-1|A0A480QLP9_PIG Computationally mapped isoform of N-acetylated alpha-linked acidic dipeptidase like 2 OS=Sus scrofa OX=9823 GN=NAALADL2 PE=1 SV=1 CANONICAL=A0A480QLP9-1" }, "locus": { "chromosome": "13", "start_pos": 114207498, "end_pos": 113467687, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076163.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076163.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062708.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062708.1" } ] } }, { "isoform_ac": "A0A8X9AER2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QLP9/entry#A0A8X9AER2-1", "sequence": { "sequence": "MGTEAAGLKYTSLVFTGKKMAYQKVNADQRAPGHSQYLDNDDLQATALDLEWDMEKELEEPGFDQFQLDSAENQNLEHAETADLNLDSIQPATSPKGRFQRLQEESDYITHYARSAPKSNPCNFCRLLKIFCTAIILFIFGILIGYYAHKNCPSNATSSGTLDLQLYQEILKTIQAEDIKKSFRNLIQLYKSEDDMEISKKIKIQWTSLGLEDVQFVNYSVLLNLPGPAPSSVTLSSSGQCFHPDGQPCSEEARKHSSQDLLYSYAAYSAKGTLKAEVIDVSYGNADDLKRIKKMKNVTNRIALLKLGRLPLLYKLSLLEKAGFGGVLLYIDPCDLPKTTNLSYDTFMVSLNPGGDPSTPGYPSIDGSFRQNRSNLTSLLVQPVSASLIAKLISSPKATTTNNACTPLELPNNEERIVNMQIQTVTKFKTVTNVVGYLKGLTSPDRYILVGSRHHTAYSYNGQEWASSTAIITAFIRALMLRVKRGWRPDRTIVFCSWGGTAFGNIGSYEWGEDFKKVLQRNVVAYVSLHSPIRGNSSLYSVASPSLQQLVAEKNNFNCSRRGQCPETNVSSVQMQDDADYFINHLGIPTVRFSYEDSQLSEGPSFLFEALFPKHTTKIEELDPFFNLHETITKLSGEVILQIANEPVLPFNALDIALEVQNSLKGDQPNTPQLLAPASRLRESTELFQSDEMRPANDPKERAPIRVRMLNDILQDMEKSFLVQHAPPGFYRNILYHLDGKTSQFSILLEAWEHCKSLASNETLQEALSEVLNSINAAQVYFKAGLDVFESILVGKN", "length": 797, "header": "tr|A0A8X9AER2-1|A0A480QLP9_PIG Computationally mapped isoform of N-acetylated alpha-linked acidic dipeptidase like 2 OS=Sus scrofa OX=9823 GN=NAALADL2 PE=1 SV=1 CANONICAL=A0A480QLP9-1" }, "locus": { "chromosome": "13", "start_pos": 114207498, "end_pos": 113467082, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041347.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041347.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034332.3", "url": "https://www.ensembl.org/id/ENSSSCP00000034332.3" } ] } }, { "isoform_ac": "I3LMQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QLP9/entry#I3LMQ6-1", "sequence": { "sequence": "MAYQKVNADQRAPGHSQYLDNDDLQATALDLEWDMEKELEEPGFDQFQLDSAENQNLEHAETADLNLDSIQPATSPKGRFQRLQEESDYITHYARSAPKSNPCNFCRLLKIFCTAIILFIFGILIGYYAHKNCPSNATSSGTLDLQLYQEILKTIQAEDIKKSFRNLIQLYKSEDDMEISKKIKIQWTSLGLEDVQFVNYSVLLNLPGPAPSSVTLSSSGQCFHPDGQPCSEEARKHSSQDLLYSYAAYSAKGTLKAEVIDVSYGNADDLKRIKKMKNVTNRIALLKLGRLPLLYKLSLLEKAGFGGVLLYIDPCDLPKTTNLSYDTFMVSLNPGGDPSTPGYPSIDGSFRQNRSNLTSLLVQPVSASLIAKLISSPKATTTNNACTPLELPNNEERIVNMQIQTVTKFKTVTNVVGYLKGLTSPDRYILVGSRHHTAYSYNGQEWASSTAIITAFIRALMLRVKRGWRPDRTIVFCSWGGTAFGNIGSYEWGEDFKKVLQRNVVAYVSLHSPIRGNSSLYSVASPSLQQLVAEPPYDLHCNWEKADDPSISTPPAPKNNFNCSRRGQCPETNVSSVQMQDDADYFINHLGIPTVRFSYEDSQLSEGPSFLFEALFPKHTTKIEELDPFFNLHETITKLSGEVILQIANEPVLPFNALDIALEVQNSLKGDQPNTPQLLAPASRLRESTELFQSDEMRPANDPKERAPIRVRMLNDILQDMEKSFLVQHAPPGFYRNILYHLDGKTSQFSILLEAWEHCKSLASNETLQEALSEVLNSINAAQVYFKAGLDVFESILVGKN", "length": 801, "header": "tr|I3LMQ6-1|A0A480QLP9_PIG Computationally mapped isoform of N-acetylated alpha-linked acidic dipeptidase like 2 OS=Sus scrofa OX=9823 GN=NAALADL2 PE=1 SV=2 CANONICAL=A0A480QLP9-1" }, "locus": { "chromosome": "13", "start_pos": 114207498, "end_pos": 113467687, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026159.3", "url": "https://www.ensembl.org/id/ENSSSCT00000026159.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025377.2", "url": "https://www.ensembl.org/id/ENSSSCP00000025377.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 357, "start_aa": "Thr", "end_pos": 357, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr357", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKW2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKW2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0N4SUJ3-1", "protein_name": "N-acetylated alpha-linked acidic dipeptidase-like 2", "gene_name": "Naaladl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGENEAGLPNMSLQGKKMAYQKVKADLRTSGHSQYLDNDELQATALDLEWDMEKELEEPGFDQFQPDSAEHQNLGHSETLDLHLDSIQPATSPKGRFQRLQEESDCVTHYTRSAPKNNHCSFCYMLKILCIATTLFIFGIIIGYYAHMNCPSDASPSGTNNPQLYQDILKTIKAEDIKKSFRNWLQLYDSKDDMEIAKKIKSHWIALGLEDTQFINYSVLLDFPGSSPGTITLSSTGQCFYPDGQPCREEARGGHSQDLFFSYAAYSAKGTLQGDVIDVSYGTMDDLKRITKLKNTTNQIALLKLGKLPLLYKISLLEKAGFGGALLYIDPCDAAESSVLSSEPFVVTLNPGGDPSTPGYPSHDGSFRKSRTNLTSLLVQPISPSLVKMLISLPKLKMDKDACSPLELPHNEKRTVSLQVQTVTQFKTVSNVVGYLRGLTSPDRYIIVGSNHHAGYSYKGQEWASSTAVITAFIEAMMLRVKKGWRPERTIVFCSWGGTPWGKIGSYEWGEDFVKILQKNAVAYIGLHSPIRGNSSLYPVVSPSLQQLVIEKIKFTCMQRAQCLGANVSSVQIQGDADYFINHLGVPTVQFAYEDIKTLEGPSFLSEAIFPTHATKIEEVDPSFSLHEAITKLSGEVILQIANEPILPFNALDIALGVQNSLKGNEPSVPHLLALASRLRESAELFQSDEMRPANDPKERAPSRVRMLNDILQDLEKNFLVQWVPPGFYRNILYHLDEKTNQFSILKEAWEHCNPQTSNETFQEALSNVLNSINSAHISFKVGLDVFESVLLGKN", "length": 795 }, "evidence": [ { "id": "A0A480QLP9", "url": "https://omabrowser.org/oma/group/A0A480QLP9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8I6ACN8-1", "protein_name": "N-acetylated alpha-linked acidic dipeptidase-like 2", "gene_name": "Naaladl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGENEAGLPNMALQGKKMAYHKVKADLRTSGHSQYLDSDDLQATALDLEWDMEKELEEPSFDQFQTDNAEHQNLGHSETLDLHLDSIQPATSPKGRFQRLQEESDCVTHYTRSAPKNNHCNFCYLLKILCIATTLFIFGIIIGYYAHMNCPSDASPSGTNNPQLYQDILKTIKAEDIKKSFRNLLQVYDSEDDMEISKKIKSHWIALGLEDTQFINYSVLLDCPGPSPGTITVSSTGQCFYPDGQPCREEARRGQSQDLFYSYAAYSAKGTLQADVIDVSYGTMDDLKRITKLKNTTNQIALLKLGKLPLLYKISLLEKAGFGGALLYIDPCDAPESAVLSSEPFMVTLNPGGDPSTPGYPSHDESFRQSRPNLTSLLVQPISASLATVLISSPKLRMDKDVCRPLELPHNEKRTVSLQVQTVTKFKTVSNVVGYLRGLTSPDRYIIVGSNHHAGHSYNGQEWASSTAVITAFIEALMLRVKKGWRPERTVVFCSWGGTPWGKIGSYEWGEDFAKILQKNAVAYVSIHSPIRGNSTLYPVASPSLQQLVLEKNKFNCVRRAQCPGANVSSVQIQGDAEYFVNHLGVPTVQFAYEDIKALEGPSFLSEAIFPKHATKIEELDPSFNLHEVITKLSGEVILQIANDPVLPFNALDIALGVQNSLKDNEPSVPNLLALASKLRDSAELFQSDEMRPANDPKERVPSRVRMLNDILQDLEKNFLVQRVPPGFYRNILYHLDEKTSQFSILKEAWEQCIPETSNETLQEALSTVLNSINSAHTFFKTGLDVFESVLLEKN", "length": 795 }, "evidence": [ { "id": "A0A480QLP9", "url": "https://omabrowser.org/oma/group/A0A480QLP9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0ZDI2-1", "protein_name": "N-acetylated alpha-linked acidic dipeptidase like 2", "gene_name": "NAALADL2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MCPFLALPYGESVKKMAYHKVNADQRTQGQYLDSDDLQATALELEWDMEKELEEPGFDHFRLDGAVQQDLGNSQSPDLDLEPIQPSASPKGRFQRLQEDPEYISHYTRQSPKSHRCSFFQILKVFCAALILFIFGIVIGYYAGKKCPSPPASPEPNNPHIYHEILKEIKAENIQQIYRDVLQSPREDDVDAAMRILLQWTSHGLEDVRLVNYSVLLDLPGSSSNTITLKNSGECFYPDGQQCSKVTRTLHSQDLLYSYAAYSAKGTLEAELVDIQYGTIEDLIRIQTTTNVTKKIALLKLGQSPLLYKLSLLEDAGFGGVLLYVDPCDLPKTTDLAEKAFMVSLNSGGDPSTPGYASIDGSYRQNRLNLTTLLVQPISAVLAKKLTSIPENRIQKDKCVPLQLSSTDKKIINLSIQSVTTYKTISNVIGYLKGSVFPDRYVIIGSHHSSLNTYGGQEWASSTAIITAFIQALMLKVKRGWRTDRTIVFCSWGGTSFGNIGSYEWAEDLKRVLQRNVVAYVSLHNPVRGNSTLHPIASPSLQQLAAESQNINCVEKMKCPGSNVSSVQTQGDSDYFINHLGVPAMQFSYEDINTSENSSFVSEALFPMHATRTEELDPSFKLHENIAKFSGYATLQIANEPVLPFNALDIALEVQNSLRVFLGEEVDASQLLAVASRLRDTAELFQSDEMRPANDPRERAPIRVRMLNDVLQSLEKSFLVQQAPPGLYRNILYRLDERTSQFSVLLEALEHCKLHQSNETIQATLSEVLNSISSAQVYFKAGLDVFETTLAGKK", "length": 793 }, "evidence": [ { "id": "A0A480QLP9", "url": "https://omabrowser.org/oma/group/A0A480QLP9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9TUG4-1", "protein_name": "N-acetylated alpha-linked acidic dipeptidase like 2", "gene_name": "NAALADL2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGENEASLPNTALQGKKMAYQKVNADQRAPGHSQYLDNDDLQATALDLEWDMEKELEEPGFDQFQLNSAENQNLENSETADLNLDPIQPATSPKGRFQRLQEESDYVTHYTRSAPKSNPRNFCRLLKIFCTAIILFISGILIGYYSHKNCPSNATSSGTLDLHLYQEILKTIQGEDIKKSFRNLVQLYKSEDDMDISKKIKTQWTSLGLEDVQLVNYSVLLNLPGLSPSSVTLSSSGQCFHPNGQPCSEEARKWSSQDLLYSYAAYSANGILEAEVIDVSYGNADDLKRIKKMKNVTNQIALLKLGKLPLLYKLSLLEKTGFGGVLLYIDPCDLPKTANLSYNTFMVSLNPGGDPSTPGYPSIDGSFRQHRSNLTSLLVQPISASLVAKLISLPKDRTTNGACSPLELPNNEERIVNMKIQTVTKFETVTNVVGYLKGVTFPDRYVIVGSHHHTAHSYNRQEWASSTAVITAFIRALMLRVKRGWRPDRTIVFCSWGGTAFGNIGSYEWGEDFRKVLQRNVVAYISLHSPVRGNSSLHSVASPSLQQLVAEKNKFNCPRRDQCPKTNISSEQIQDDADYFINHLGVPTVRFTYEDIKTLEGPSFLSEALFPKHATKIEEMDPFFNLHETITKLSGEVILQIANEPVLPFNALDIALEVQNSLKGDQTTTPQLLALASRLRESAELFQSDEMRPANDPKERDPMRVRMLNDLLQDMEKSFLVQHAPPGFYRNILYHLDGKTSQFSILLEAWEHCKSLASNETLQEALSEVLNSINAAQVYFKAGLDVFESVLVGKN", "length": 795 }, "evidence": [ { "id": "A0A480QLP9", "url": "https://omabrowser.org/oma/group/A0A480QLP9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q58DX5-1", "protein_name": "Inactive N-acetylated-alpha-linked acidic dipeptidase-like protein 2", "gene_name": "NAALADL2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGENEASLPNTSLQGKKMAYQKVHADQRAPGHSQYLDNDDLQATALDLEWDMEKELEESGFDQFQLDGAENQNLGHSETIDLNLDSIQPATSPKGRFQRLQEESDYITHYTRSAPKSNRCNFCHVLKILCTATILFIFGILIGYYVHTNCPSDAPSSGTVDPQLYQEILKTIQAEDIKKSFRNLVQLYKNEDDMEISKKIKTQWTSLGLEDVQFVNYSVLLDLPGPSPSTVTLSSSGQCFHPNGQPCSEEARKDSSQDLLYSYAAYSAKGTLKAEVIDVSYGMADDLKRIRKIKNVTNQIALLKLGKLPLLYKLSSLEKAGFGGVLLYIDPCDLPKTVNPSHDTFMVSLNPGGDPSTPGYPSVDESFRQSRSNLTSLLVQPISAPLVAKLISSPKARTKNEACSSLELPNNEIRVVSMQVQTVTKLKTVTNVVGFVMGLTSPDRYIIVGSHHHTAHSYNGQEWASSTAIITAFIRALMSKVKRGWRPDRTIVFCSWGGTAFGNIGSYEWGEDFKKVLQKNVVAYISLHSPIRGNSSLYPVASPSLQQLVVEKNNFNCTRRAQCPETNISSIQIQGDADYFINHLGVPIVQFAYEDIKTLEGPSFLSEARFSTRATKIEEMDPSFNLHETITKLSGEVILQIANEPVLPFNALDIALEVQNNLKGDQPNTHQLLAMALRLRESAELFQSDEMRPANDPKERAPIRIRMLNDILQDMEKSFLVKQAPPGFYRNILYHLDEKTSRFSILIEAWEHCKPLASNETLQEALSEVLNSINSAQVYFKAGLDVFKSVLDGKN", "length": 795 }, "evidence": [ { "id": "A0A480QLP9", "url": "https://omabrowser.org/oma/group/A0A480QLP9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A480QLP9", "url": "https://www.uniprot.org/uniprotkb/A0A480QLP9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 153, "end_pos": 155, "annotation": "n_glycosylation_sequon" }, { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 295, "end_pos": 297, "annotation": "n_glycosylation_sequon" }, { "start_pos": 339, "end_pos": 341, "annotation": "n_glycosylation_sequon" }, { "start_pos": 370, "end_pos": 372, "annotation": "n_glycosylation_sequon" }, { "start_pos": 373, "end_pos": 375, "annotation": "n_glycosylation_sequon" }, { "start_pos": 534, "end_pos": 536, "annotation": "n_glycosylation_sequon" }, { "start_pos": 556, "end_pos": 558, "annotation": "n_glycosylation_sequon" }, { "start_pos": 567, "end_pos": 569, "annotation": "n_glycosylation_sequon" }, { "start_pos": 759, "end_pos": 761, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 357 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 153, "end_pos": 155 }, { "start_pos": 216, "end_pos": 218 }, { "start_pos": 295, "end_pos": 297 }, { "start_pos": 339, "end_pos": 341 }, { "start_pos": 370, "end_pos": 372 }, { "start_pos": 373, "end_pos": 375 }, { "start_pos": 534, "end_pos": 536 }, { "start_pos": 556, "end_pos": 558 }, { "start_pos": 567, "end_pos": 569 }, { "start_pos": 759, "end_pos": 761 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1SFB6-1", "uniprot_ac": "A0A4X1SFB6", "uniprot_id": "A0A4X1SFB6_PIG", "mass": { "chemical_mass": 36341.0, "monoisotopic_mass": 36341.0 }, "refseq": { "ac": "XP_005657971", "name": "four and a half LIM domains protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657971" }, "gene_names": [ { "name": "FHL1", "type": "recommended", "evidence": [ { "id": "A0A4X1SFB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB6" } ] }, { "name": "FHL1C", "type": "synonym", "evidence": [ { "id": "XP_005657971", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657971" } ] }, { "name": "FHL1", "type": "synonym", "evidence": [ { "id": "XP_005657971", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657971" } ] } ], "protein_names": [ { "name": "Four and a half LIM domains protein 1", "type": "recommended", "evidence": [ { "id": "A0A4X1SFB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB6/entry#names_and_taxonomy" } ] }, { "name": "four and a half LIM domains protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005657971", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657971" } ] } ], "function": [ { "annotation": "May have an involvement in muscle development or hypertrophy. Isoform 2 binds to RBP-J and plays a negative regulatory role in the RBP-J-mediated transcription in mammalian systems.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAL6", "url": "https://www.uniprot.org/uniprotkb/A0A287AAL6#function" }, { "database": "UniProtKB", "id": "ARBA00059927", "url": "https://www.uniprot.org/uniprotkb/ARBA00059927#function" }, { "database": "UniProtKB", "id": "K7GLQ8", "url": "https://www.uniprot.org/uniprotkb/K7GLQ8#function" }, { "database": "UniProtKB", "id": "K7GSI9", "url": "https://www.uniprot.org/uniprotkb/K7GSI9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SFB6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FHL1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB6", "locus": {} } ], "crossref": [ { "id": "A0A4X1SFB6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SFB6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012699", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012699", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09344", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09344", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09348", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09348", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09424", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09424", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09429", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09429", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "397667", "url": "https://www.ncbi.nlm.nih.gov/gene/397667", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042997", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042997", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056807", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056807", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SFB6", "url": "https://www.orthodb.org/?gene=A0A4X1SFB6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A5K1U1D3", "url": "https://www.orthodb.org/?gene=A0A5K1U1D3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47029", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47029", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47029:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47029:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005657971", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657971", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AAL6", "url": "https://www.uniprot.org/uniprotkb/A0A287AAL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAL6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SFB6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SFB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5K1U1D3", "url": "https://www.uniprot.org/uniprotkb/A0A5K1U1D3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5K1U1D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5K1U1D3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GLQ8", "url": "https://www.uniprot.org/uniprotkb/K7GLQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GLQ8-1", "url": "https://www.uniprot.org/uniprotkb/K7GLQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GS06", "url": "https://www.uniprot.org/uniprotkb/K7GS06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GS06-1", "url": "https://www.uniprot.org/uniprotkb/K7GS06-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GSI9", "url": "https://www.uniprot.org/uniprotkb/K7GSI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GSI9-1", "url": "https://www.uniprot.org/uniprotkb/K7GSI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEKFDCHYCRDPLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRYWHDTCFRCSKCLHPLANETFMAKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGKRTVSRVSHPVSKARKAPVCHGKRLPLTLFPSANLRGRHPGGERTCPSWVVVLYRKNRSLAAPRGPGLVKAPVWWPMKDNPGTTTASTAKNAP", "length": 323, "header": "tr|A0A4X1SFB6-1|A0A4X1SFB6_PIG Isoform 1 of Four and a half LIM domains protein 1 OS=Sus scrofa OX=9823 GN=FHL1 PE=1 SV=1 CANONICAL=A0A4X1SFB6-1" }, "isoforms": [ { "isoform_ac": "A0A287AAL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB6/entry#A0A287AAL6-1", "sequence": { "sequence": "MSLAWSGVGRKFGFRCAEFRGWERGGLLPPPPASPPRSCRRCPSGRPPSSAQSRLAPSVSSQRQCRGMAQWDPLPGAQGLSVSSPESPVNCLWPQRPGRSPRTPWPSRLICSASLPPAGPSSYKVGTMAEKFDCHYCRDPLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRYWHDTCFRCSKCLHPLANETFMAKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL", "length": 407, "header": "tr|A0A287AAL6-1|A0A4X1SFB6_PIG Computationally mapped isoform of Four and a half LIM domains protein 1 OS=Sus scrofa OX=9823 GN=FHL1 PE=1 SV=1 CANONICAL=A0A4X1SFB6-1" }, "locus": { "chromosome": "X", "start_pos": 111366553, "end_pos": 111362937, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036974.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036974.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040932.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040932.2" } ] } }, { "isoform_ac": "A0A4X1SFB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB6/entry#A0A4X1SFB6-1", "sequence": { "sequence": "MAEKFDCHYCRDPLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRYWHDTCFRCSKCLHPLANETFMAKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGKRTVSRVSHPVSKARKAPVCHGKRLPLTLFPSANLRGRHPGGERTCPSWVVVLYRKNRSLAAPRGPGLVKAPVWWPMKDNPGTTTASTAKNAP", "length": 323, "header": "tr|A0A4X1SFB6-1|A0A4X1SFB6_PIG Isoform 1 of Four and a half LIM domains protein 1 OS=Sus scrofa OX=9823 GN=FHL1 PE=1 SV=1 CANONICAL=A0A4X1SFB6-1" }, "locus": { "chromosome": "X", "start_pos": 111366482, "end_pos": 111363318, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036653.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036653.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028881.2", "url": "https://www.ensembl.org/id/ENSSSCP00000028881.2" } ] } }, { "isoform_ac": "A0A5K1U1D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB6/entry#A0A5K1U1D3-1", "sequence": { "sequence": "MFTTEPQPYQPGPGDSGSRCGLGLAGGAMASHRHAGPSSYKVGTMAEKFDCHYCRDPLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRYWHDTCFRCSKCLHPLANETFMAKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGKRTVSRVSHPVSKARKAPVCHGKRLPLTLFPSANLRGRHPGGERTCPSWVVVLYRKNRSLAAPRGPGLVKAPVWWPMKDNPGTTTASTAKNAP", "length": 367, "header": "tr|A0A5K1U1D3-1|A0A4X1SFB6_PIG Computationally mapped isoform of Four and a half LIM domains protein 1 OS=Sus scrofa OX=9823 GN=FHL1 PE=1 SV=1 CANONICAL=A0A4X1SFB6-1" }, "locus": { "chromosome": "X", "start_pos": 111366482, "end_pos": 111356472, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032887.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032887.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029789.2", "url": "https://www.ensembl.org/id/ENSSSCP00000029789.2" } ] } }, { "isoform_ac": "K7GLQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB6/entry#K7GLQ8-1", "sequence": { "sequence": "ITFSAASLALELIWMLSSPTGPSSYKVGTMAEKFDCHYCRDPLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRYWHDTCFRCSKCLHPLANETFMAKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL", "length": 309, "header": "tr|K7GLQ8-1|A0A4X1SFB6_PIG Computationally mapped isoform of Four and a half LIM domains protein 1 OS=Sus scrofa OX=9823 GN=FHL1 PE=1 SV=4 CANONICAL=A0A4X1SFB6-1" }, "locus": { "chromosome": "X", "start_pos": 111366553, "end_pos": 111356248, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035444.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035444.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028790.4", "url": "https://www.ensembl.org/id/ENSSSCP00000028790.4" } ] } }, { "isoform_ac": "K7GS06-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB6/entry#K7GS06-1", "sequence": { "sequence": "MSLAWSGVGRKFGFRCAEFRGWERGGLLPPPPASPPRSCRRCPSGRPPSSAQSRLAPSVSSQRQCRGMAQWDPLPGAQGLSVSSPESPVNCLWPQRPGRSPRTPWPSRLICSASLPPAGPSSYKVGTMAEKFDCHYCRDPLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRYWHDTCFRCSKCLHPLANETFMAKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGKRTVSRVSHPVSKARKAPVCHGKRLPLTLFPSANLRGRHPGGERTCPSWVVVLYRKNRSLAAPRGPGLVKAPVWWPMKDNPGTTTASTAKNAP", "length": 450, "header": "tr|K7GS06-1|A0A4X1SFB6_PIG Computationally mapped isoform of Four and a half LIM domains protein 1 OS=Sus scrofa OX=9823 GN=FHL1 PE=1 SV=3 CANONICAL=A0A4X1SFB6-1" }, "locus": { "chromosome": "X", "start_pos": 111366482, "end_pos": 111362937, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000033720.4", "url": "https://www.ensembl.org/id/ENSSSCT00000033720.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030686.3", "url": "https://www.ensembl.org/id/ENSSSCP00000030686.3" } ] } }, { "isoform_ac": "K7GSI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB6/entry#K7GSI9-1", "sequence": { "sequence": "MYVHNGAAALSAGPRGQWLQVRLGTRWRSHGLPQTCRPCLPLMLFPGQKRSCSGPSSYKVGTMAEKFDCHYCRDPLQGKKYVQKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRYWHDTCFRCSKCLHPLANETFMAKDNKILCNKCTTREDSPKCKGCFKPIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL", "length": 342, "header": "tr|K7GSI9-1|A0A4X1SFB6_PIG Computationally mapped isoform of Four and a half LIM domains protein 1 OS=Sus scrofa OX=9823 GN=FHL1 PE=1 SV=2 CANONICAL=A0A4X1SFB6-1" }, "locus": { "chromosome": "X", "start_pos": 111366553, "end_pos": 111356468, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": 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"K7GLQ8", "url": "https://www.uniprot.org/uniprotkb/K7GLQ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SFB6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SFB6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFB6" } ], "pmid": "" }, { "name": "transmembrane transporter binding", "id": "GO:0044325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044325", "evidence": [ { "database": 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AB10-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AB10-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SDQ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SDQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEFPSKVSTRTSSPAQGGAAVSALRPDLGFVRSSLGALMLLQLVLGLLVWALIADTPYHLYPAYGWVMFVAVFLWLVTIVFFILYLFQLHMKLYMVPWPLVLMIFNVGATLLYITAFITCSASVELTSLKGTRRYNQQAAASFFSCLVMIAYGVSAFFSFQAWRGVGSNAATSQMAGGYA", "length": 181, "header": "tr|A0A4X1SDQ5-1|A0A4X1SDQ5_PIG Isoform 1 of Plasmolipin OS=Sus scrofa OX=9823 GN=PLLP PE=3 SV=1 CANONICAL=A0A4X1SDQ5-1" }, "isoforms": [ { "isoform_ac": "A0A287AB10-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDQ5/entry#A0A287AB10-1", "sequence": { "sequence": 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"tr|A0A4X1SDQ5-1|A0A4X1SDQ5_PIG Isoform 1 of Plasmolipin OS=Sus scrofa OX=9823 GN=PLLP PE=3 SV=1 CANONICAL=A0A4X1SDQ5-1" }, "locus": { "chromosome": "6", "start_pos": 19241078, "end_pos": 19217677, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003118.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003118.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003037.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003037.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AB10", "url": "https://www.uniprot.org/uniprotkb/A0A287AB10" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516614", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516614", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A3KQ86-1", "protein_name": "Plasmolipin", "gene_name": "pllp", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADFPGKVSTQTSSQEPQRSFAISSSVDMGFIKSIPGILLIAEIVVGLLVWTLIASTPHYLIPALGWVLFVSITLWLLSIALLVILLLSLHQRLPSVPWPLVLLVFYSVAALLYLTAFLANAATVPGGYYQGHLGASAFFGIVETLLYTASSYFAYLGWRGEGQNAAGSTVPV", "length": 173 }, "evidence": [ { "id": "A0A4X1SDQ5", "url": "https://omabrowser.org/oma/group/A0A4X1SDQ5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6H7B0-1", "protein_name": "Plasmolipin", "gene_name": "PLLP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAEFPSKVNTRTSSPAQGGGAVVSTLSPDLGFVRSSLGALMLLQLVLGLLVWALIADTPYHLYPSYGWVMFVAVFLWLVTIIFFVLYLFQLHMKLYMVPWPLVLMVFNVGATVLYITAFITCSASVELTSLKGSQPYNQRAAASFFSCLVMIAYGVSAFLSFQAWRGVGSNAATSQMAGGYA", "length": 182 }, "evidence": [ { "id": "A0A4X1SDQ5", "url": "https://omabrowser.org/oma/group/A0A4X1SDQ5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47987-1", "protein_name": "Plasmolipin", "gene_name": "Pllp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEFPSKVSTRTSSPAQGVGASVSAMRPDLGFVRSALGVLALLQLVLGLLVWALIADTPYHLYPAYGWVMFVAVFLWLVTIVFFIIYLFQLHMKLYMVPWPLVLLVFFVAATVLYITAFVACAAAVDLTSLRGSRPYNQRSAASFFACLVMIAYGLSAFFSFQAWRGVGSNAATSQMAGGYS", "length": 182 }, "evidence": [ { "id": "A0A4X1SDQ5", "url": "https://omabrowser.org/oma/group/A0A4X1SDQ5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9DCU2-1", "protein_name": "Plasmolipin", "gene_name": "Pllp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEFPSKVSTRTSSPAQGVGASVSALRPDLGFVRSALGVLALLQLALGLLVWALIADTPYHLYPAYGWVMFVAVFLWLVTIVFFIIYLFQLHMKLYMVPWPLVLLIFFVAATVLYITAFIACAAAVDLTSLRGSRPYNQRSAASFFACLVMIAYGVSAFFSFQAWRGVGSNAATSQMAGGYS", "length": 182 }, "evidence": [ { "id": "A0A4X1SDQ5", "url": "https://omabrowser.org/oma/group/A0A4X1SDQ5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y342-1", "protein_name": "Plasmolipin", "gene_name": "PLLP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEFPSKVSTRTSSPAQGAEASVSALRPDLGFVRSRLGALMLLQLVLGLLVWALIADTPYHLYPAYGWVMFVAVFLWLVTIVLFNLYLFQLHMKLYMVPWPLVLMIFNISATVLYITAFIACSAAVDLTSLRGTRPYNQRAAASFFACLVMIAYGVSAFFSYQAWRGVGSNAATSQMAGGYA", "length": 182 }, "evidence": [ { "id": "A0A4X1SDQ5", "url": "https://omabrowser.org/oma/group/A0A4X1SDQ5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "structural constituent of myelin sheath", "id": "GO:0019911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019911", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDQ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDQ5" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDQ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDQ5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDQ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDQ5" } ], "pmid": "" }, { "name": "myelin sheath", "id": "GO:0043209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043209", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDQ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDQ5" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDQ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDQ5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "myelination", "id": "GO:0042552", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042552", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDQ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDQ5" } ], "pmid": "" }, { "name": "myelin assembly", "id": "GO:0032288", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032288", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDQ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDQ5" } ], "pmid": "" }, { "name": "regulation of transcytosis", "id": "GO:1904298", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904298", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SDQ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDQ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1SDQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDQ5" }, { "id": "PS51225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MARVEL", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 165, "start_aa": "Phe", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480K201-1", "uniprot_ac": "A0A480K201", "uniprot_id": "A0A480K201_PIG", "mass": { "chemical_mass": 102823.0, "monoisotopic_mass": 102823.0 }, "refseq": { "ac": "XP_020951719", "name": "serine/threonine-protein phosphatase 4 regulatory subunit 1 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951719" }, "gene_names": [ { "name": "PPP4R1", "type": "recommended", "evidence": [ { "id": "A0A480K201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K201" } ] }, { "name": "PPP4R1", "type": "synonym", "evidence": [ { "id": "XP_020951719", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951719" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein phosphatase 4 regulatory subunit 1", "type": "recommended", "evidence": [ { "id": "A0A480K201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K201/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein phosphatase 4 regulatory subunit 1 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020951719", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951719" } ] } ], "function": [ { "annotation": "Regulatory subunit of serine/threonine-protein phosphatase 4. May play a role in regulation of cell division in renal glomeruli. The PPP4C-PPP4R1 PP4 complex may play a role in dephosphorylation and regulation of HDAC3. Plays a role in the inhibition of TNF-induced NF-kappa-B activation by regulating the dephosphorylation of TRAF2.", "evidence": [ { "database": "UniProtKB", "id": "I3LJD6", "url": "https://www.uniprot.org/uniprotkb/I3LJD6#function" }, { "database": "UniProtKB", "id": "ARBA00054228", "url": "https://www.uniprot.org/uniprotkb/ARBA00054228#function" }, { "database": "UniProtKB", "id": "A0A287AB21", "url": "https://www.uniprot.org/uniprotkb/A0A287AB21#function" }, { "database": "UniProtKB", "id": "A0A480K201", "url": "https://www.uniprot.org/uniprotkb/A0A480K201#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480K201", "url": "https://www.uniprot.org/uniprotkb/A0A480K201" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPP4R1", "url": "https://www.uniprot.org/uniprotkb/A0A480K201", "locus": { "chromosome": "6", "start_pos": 98544477, "end_pos": 98462855, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003679", "url": "https://www.ensembl.org/id/ENSSSCG00000003679" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003679", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003679", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100624877", "url": "https://www.ncbi.nlm.nih.gov/gene/100624877", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000357", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021133", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021133", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051023", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051023", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055231", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055231", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10648", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10648", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10648:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10648:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02985", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02985", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22956", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22956", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020951719", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951719", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AB21", "url": "https://www.uniprot.org/uniprotkb/A0A287AB21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AB21-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AB21-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480K201", "url": "https://www.uniprot.org/uniprotkb/A0A480K201", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480K201-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K201-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LJD6", "url": "https://www.uniprot.org/uniprotkb/I3LJD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LJD6-1", "url": "https://www.uniprot.org/uniprotkb/I3LJD6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADLSLLQEDLQEDADGSLDFVSQDEMLTPLGRLDKYAASENVFNRQMVARSLLDTLREVCDDERDCVAVLERISRLADDSEPTVRAELMEQVPHIALFCQENRPAIPYAFSKYLLPIVVRYLADQNNQVRKTSQAALLALLEQELIERFDVETKVCPVLVELTAPDSNDDVKTEAVAIMCKMAPMVGKDITERLILPRFCEMCCDCRMFHVRKVCAANFGDICSVVGQQATEEMLLPRFFQLCSDNVWGVRKACAECFMAVSCATCQEIRRTKLSALFINLISDPSRWVRQAAFQSLGPFISTFANPSSSGQYFKEENKSSEDTSVEDKNRIRDHEALEDAELRPEEAPAVPAVSASVELEGTMTGGAESPRQPPGETGAPLSASSSEAQPEAASNEGDGKPGNCGSVSLSEGSFSAQDPALPDQDLFNSFHFWRTPLPNIDLDMELEQGTGGTPSPEGAEETPEVPGPISANITMATRKELEEMIENLEPHIDDPDVKAQVDVLAAALRASSLDARDEASEATRRATQDEPATGEPPGCGLGHDATGPLISDAVETLDSALCYIRDDSDLSSNSGFSPDEERRSKVQDVVPQALLDQYLSMTDPSRAQTVDTEIAKHCAYSLPGVALTLGRQNWHCLRETYEALASDMQWKVRRTLAFSIHELAVILGDQLTAADLVPIFNGFLKDLDEVRIGVLKHLHDFLKLLHIDKRREYLYQLQEFLVTDNSRNWRFRAELAEQLILLLELYSPRDVYDYLRPIALNLCADKVSSVRWISYKLVSEMVRKLHQAAPPSFGVDLIRELVESFGRCPRWSGRQAFVFVCQTVIEDDCLPMDQFALHLMPHLLTLANDRVPNVRVLLAKTLRQTLLEKECFLTSASCHQEAVEQTIMALQMDRDSDVKYFASIHPASTKVSEDALSTASSTY", "length": 925, "header": "tr|A0A480K201-1|A0A480K201_PIG Isoform 1 of Serine/threonine-protein phosphatase 4 regulatory subunit 1 OS=Sus scrofa OX=9823 GN=PPP4R1 PE=4 SV=1 CANONICAL=A0A480K201-1" }, "isoforms": [ { "isoform_ac": "A0A287AB21-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K201/entry#A0A287AB21-1", "sequence": { "sequence": "MLTPLGRLDKYAASENVFNRQMVARSLLDTLREVCDDERDCVAVLERISRLADDSEPTVRAELMEQVPHIALFCQENRPAIPYAFSKYLLPIVVRYLADQNNQVRKTSQAALLALLEQELIERFDVETKVCPVLVELTAPDSNDDVKTEAVAIMCKMAPMVGKDITERLILPRFCEMCCDCRMFHVRKVCAANFGDICSVVGQQATEEMLLPRFFQLCSDNVWGVRKACAECFMAVSCATCQEIRRTKLSALFINLISDPSRWVRQAAFQSLGPFISTFANPSSSGQYFKEENKSSEDTSVEDKNRIRDHEALEDAELRPEEAPAVPAVSASVELEGTMTGGAESPRQPPGETGAPLSASSSEAQPEAASNEGDGKPGNCGSVSLSEGSFSAQDPALPDQDLFNSFHFWRTPLPNIDLDMELEQGTGGTPSPEGAEETPEVPGPISANITMATRKELEEMIENLEPHIDDPDVKAQVDVLAAALRASSLDARDEASEATRRATQDEPATGEPPGCGLGHDATGPLISDAVETLDSALCYIRDDSDLSSNSGFSPDEERRSKVQDVVPQALLDQYLSMTDPSRAQTVDTEIAKHCAYSLPGVALTLGRQNWHCLRETYEALASDMQWKVRRTLAFSIHELAVILGDQLTAADLVPIFNGFLKDLDEVRIGVLKHLHDFLKLLHIDKRREYLYQLQEFLVTDNSRNWRFRAELAEQLILLLELYSPRDVYDYLRPIALNLCADKVSSVRWISYKLVSEMVRKLHQAAPPSFGVDLIRELVESFGRCPRWSGRQAFVFVCQTVIEDDCLPMDQFALHLMPHLLTLANDRVPNVRVLLAKTLRQTLLEKECFLTSASCHQEAVEQTIMALQMDRDSDVKYFASIHPASTKVSEDALSTASSTY", "length": 899, "header": "tr|A0A287AB21-1|A0A480K201_PIG Computationally mapped isoform of Serine/threonine-protein phosphatase 4 regulatory subunit 1 OS=Sus scrofa OX=9823 GN=PPP4R1 PE=4 SV=1 CANONICAL=A0A480K201-1" }, "locus": { "chromosome": "6", "start_pos": 98538717, "end_pos": 98481357, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043778.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043778.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041096.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041096.1" } ] } }, { "isoform_ac": "A0A480K201-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K201/entry#A0A480K201-1", "sequence": { "sequence": "MADLSLLQEDLQEDADGSLDFVSQDEMLTPLGRLDKYAASENVFNRQMVARSLLDTLREVCDDERDCVAVLERISRLADDSEPTVRAELMEQVPHIALFCQENRPAIPYAFSKYLLPIVVRYLADQNNQVRKTSQAALLALLEQELIERFDVETKVCPVLVELTAPDSNDDVKTEAVAIMCKMAPMVGKDITERLILPRFCEMCCDCRMFHVRKVCAANFGDICSVVGQQATEEMLLPRFFQLCSDNVWGVRKACAECFMAVSCATCQEIRRTKLSALFINLISDPSRWVRQAAFQSLGPFISTFANPSSSGQYFKEENKSSEDTSVEDKNRIRDHEALEDAELRPEEAPAVPAVSASVELEGTMTGGAESPRQPPGETGAPLSASSSEAQPEAASNEGDGKPGNCGSVSLSEGSFSAQDPALPDQDLFNSFHFWRTPLPNIDLDMELEQGTGGTPSPEGAEETPEVPGPISANITMATRKELEEMIENLEPHIDDPDVKAQVDVLAAALRASSLDARDEASEATRRATQDEPATGEPPGCGLGHDATGPLISDAVETLDSALCYIRDDSDLSSNSGFSPDEERRSKVQDVVPQALLDQYLSMTDPSRAQTVDTEIAKHCAYSLPGVALTLGRQNWHCLRETYEALASDMQWKVRRTLAFSIHELAVILGDQLTAADLVPIFNGFLKDLDEVRIGVLKHLHDFLKLLHIDKRREYLYQLQEFLVTDNSRNWRFRAELAEQLILLLELYSPRDVYDYLRPIALNLCADKVSSVRWISYKLVSEMVRKLHQAAPPSFGVDLIRELVESFGRCPRWSGRQAFVFVCQTVIEDDCLPMDQFALHLMPHLLTLANDRVPNVRVLLAKTLRQTLLEKECFLTSASCHQEAVEQTIMALQMDRDSDVKYFASIHPASTKVSEDALSTASSTY", "length": 925, "header": "tr|A0A480K201-1|A0A480K201_PIG Isoform 1 of Serine/threonine-protein phosphatase 4 regulatory subunit 1 OS=Sus scrofa OX=9823 GN=PPP4R1 PE=4 SV=1 CANONICAL=A0A480K201-1" }, "locus": { "chromosome": "6", "start_pos": 98538717, "end_pos": 98462944, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077025.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077025.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073572.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073572.1" } ] } }, { "isoform_ac": "I3LJD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K201/entry#I3LJD6-1", "sequence": { "sequence": "MADLSLLQEDLQEDADGSLDFVSQDEMLTPLGRLDKYAASENVFNRQMVARSLLDTLREVCDDERDCVAVLERISRLADDSEPTVRAELMEQVPHIALFCQENRPAIPYAFSKYLLPIVVRYLADQNNQVRKTSQAALLALLEQELIERFDVETKVCPVLVELTAPDSNDDVKTEAVAIMCKMAPMVGKDITERLILPRFCEMCCDCRMFHVRKVCAANFGDICSVVGQQATEEMLVRQAAFQSLGPFISTFANPSSSGQYFKEENKSSEDTSVEDKNRIRDHEALEDAELRPEEAPAVPAVSASVELEGTMTGGAESPRQPPGETGAPLSASSSEAQPEAASNEGDGKPGNCGSVSLSEGSFSAQDPALPDQDLFNSFHFWRTPLPNIDLDMELEQGTGGTPSPEGAEETPEVPGPISANITMATRKELEEMIENLEPHIDDPDVKAQVDVLAAALRASSLDARDEASEATRRATQDEPATGEPPGCGLGHDATGPLISDAVETLDSALCYIRDDSDLSSNSGFSPDEERRSKVQDVVPQALLDQYLSMTDPSRAQTVDTEIAKHCAYSLPGVALTLGRQNWHCLRETYEALASDMQWKVRRTLAFSIHELAVILGDQLTAADLVPIFNGFLKDLDEVRIGVLKHLHDFLKLLHIDKRREYLYQLQEFLVTDNSRNWRFRAELAEQLILLLELYSPRDVYDYLRPIALNLCADKVSSVRWISYKLVSEMVRKLHQAAPPSFGVDLIRELVESFGRCPRWSGRQAFVFVCQTVIEDDCLPMDQFALHLMPHLLTLANDRVPNVRVLLAKTLRQTLLEKECFLTSASCHQEAVEQTIMALQMDRDSDVKYFASIHPASTKVSEDALSTASSTY", "length": 872, "header": "tr|I3LJD6-1|A0A480K201_PIG Computationally mapped isoform of Serine/threonine-protein phosphatase 4 regulatory subunit 1 OS=Sus scrofa OX=9823 GN=PPP4R1 PE=4 SV=3 CANONICAL=A0A480K201-1" }, "locus": { "chromosome": "6", "start_pos": 98538717, "end_pos": 98462944, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024524.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024524.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024196.3", "url": "https://www.ensembl.org/id/ENSSSCP00000024196.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 455, "start_aa": "Thr", "end_pos": 455, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr455", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LJD6", "url": "https://www.uniprot.org/uniprotkb/I3LJD6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A480K201", "url": "https://www.uniprot.org/uniprotkb/A0A480K201" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein phosphatase regulator activity", "id": "GO:0019888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019888", "evidence": [ { "database": "UniProtKB", "id": "A0A480K201", "url": "https://www.uniprot.org/uniprotkb/A0A480K201" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" }, { "start_pos": 474, "end_pos": 476, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480K201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K201" }, { "id": "PF22956", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22956" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PIK3R4-like middle", "eco_id": "ECO_0000259", "start_pos": 48, "end_pos": 302, "start_aa": "Met", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A480K201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K201" }, { "id": "PF15017", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15017" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Putative WW-binding", "eco_id": "ECO_0000259", "start_pos": 429, "end_pos": 450, "start_aa": "Phe", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 455 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 319, "end_pos": 321 }, { "start_pos": 474, "end_pos": 476 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480U521-1", "uniprot_ac": "A0A480U521", "uniprot_id": "A0A480U521_PIG", "mass": { "chemical_mass": 67744.0, "monoisotopic_mass": 67744.0 }, "refseq": { "ac": "XP_020948462", "name": "methyltransferase-like protein 25 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948462" }, "gene_names": [ { "name": "METTL25", "type": "recommended", "evidence": [ { "id": "A0A480U521", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480U521" } ] }, { "name": "METTL25", "type": "synonym", "evidence": [ { "id": "XP_020948462", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948462" } ] } ], "protein_names": [ { "name": "Methyltransferase like 25", "type": "synonym", "evidence": [ { "id": "A0A480U521", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480U521/entry#names_and_taxonomy" } ] }, { "name": "methyltransferase-like protein 25 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020948462", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948462" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480U521", "url": "https://www.uniprot.org/uniprotkb/A0A480U521" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "METTL25", "url": "https://www.uniprot.org/uniprotkb/A0A480U521", "locus": { "chromosome": "5", "start_pos": 99227750, "end_pos": 99358587, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000941", "url": "https://www.ensembl.org/id/ENSSSCG00000000941" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000941", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000941", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02440", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02440", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512658", "url": "https://www.ncbi.nlm.nih.gov/gene/100512658", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025714", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025714", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052220", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052220", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LQAPYNW", "url": "https://omabrowser.org/oma/group/LQAPYNW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12496", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12496", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12496:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12496:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020948462", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948462", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ACB4", "url": "https://www.uniprot.org/uniprotkb/A0A287ACB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ACB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AN78", "url": "https://www.uniprot.org/uniprotkb/A0A287AN78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AN78-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AN78-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJY9", "url": "https://www.uniprot.org/uniprotkb/A0A287BJY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJY9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480U521", "url": "https://www.uniprot.org/uniprotkb/A0A480U521", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480U521-1", "url": "https://www.uniprot.org/uniprotkb/A0A480U521-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWR8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDP5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYL8", "url": "https://www.uniprot.org/uniprotkb/F1RYL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYL8-1", "url": "https://www.uniprot.org/uniprotkb/F1RYL8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYM0", "url": "https://www.uniprot.org/uniprotkb/F1RYM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYM0-1", "url": "https://www.uniprot.org/uniprotkb/F1RYM0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASCPLPVTPDLPTLRAKLHGLLRFLREALPISNAHTVDFYTESVWEQLVDLPPETVLAVLRRSAAEAEAQPSAARPLAEAQGGSDSTDFPKVFCETSQKLVSVEAFALAAKCYSVQNLGICTPLEQLLVALRGNQKQRTDKNVKPDEFMNLKKSHEVQAMSELISSVADYYGVKQIIDLGSGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWRVYHRRSKLDVSALALQTAKERKLQDEIECNAYAEGVGNSSTANQEKMSTSDFLPDFSGSVISNIRKQMENLHVHSHREENLYFENAFSVRDLLPINAIESTSSQTPKRKMLETNKERRKVTSKSNESNVYSPLTSFITADSELHDIIKDLEDCLMVGLHTCGDLAPNTLRIFASKSEIKGVCSVGCCYHLLSEEFENPHKECTQEKWGFPMCRSLKEGRWCCGRNARMSACLALERVAVGQGLPTESLFYRAVLQDIIKDCYGITKCDRHVGKLYSKSSSFLDYVRKSLKKLGLDESKLPEKVIMDYYEKYKPRMNELEAFNMLKVVLAPCIETLILLDRLCYLKEQEDIAWSALVKLFDPVKSPRCYALIALKKPQ", "length": 602, "header": "tr|A0A480U521-1|A0A480U521_PIG Isoform 1 of Methyltransferase like 25 OS=Sus scrofa OX=9823 GN=METTL25 PE=4 SV=1 CANONICAL=A0A480U521-1" }, "isoforms": [ { "isoform_ac": "A0A287ACB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480U521/entry#A0A287ACB4-1", "sequence": { "sequence": "MAASCPLPVTPDLPTLRAKLHGLLRFLREALPISNAHTVDFYTESVWEQLVDLPPETVLAVLRRSAAEAEAQPSAARPLAEAQGGSDSTDFPKVFCETSQKLVSVEAFALAAKCYSVQNLGICTPLEQLLVALRGNQKQRTDKNVKPDEFMNLKKSHEVQAMSELISSVADYYGVKQIIDLGSGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWRVYHRRSKLDVSALALQTAKERKLQDEIECNAYAEGVGNSSTANQEKMSTSDFLPDFSGSVISNIRKQMENLHVHSHREENLYFENAFSVRDLLPINAIESTSSQTPKRKMLETNKERRKVTSKSNESNVYSPLTSFITADSELHDIIKDLEDCLMVGLHTCGDLAPNTLRIFASKSEIKGVCSVGCCYHLLSEEFENPHKECTQEKWGFPMCRSLKEGRWCCGRNARMSACLLPTESLFYRAVLQDIIKDCYGITKCDRHVGKLYSKSSSFLDYVRKSLKKLGLDESKLKVVLAPCIETLILLDRLCYLKEQEDIAWSALVKLFDPVKSPRCYALIALKKPQ", "length": 567, "header": "tr|A0A287ACB4-1|A0A480U521_PIG Computationally mapped isoform of Methyltransferase like 25 OS=Sus scrofa OX=9823 GN=METTL25 PE=4 SV=2 CANONICAL=A0A480U521-1" }, "locus": { "chromosome": "5", "start_pos": 99358550, "end_pos": 99261662, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057847.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057847.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041650.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041650.2" } ] } }, { "isoform_ac": "A0A287AN78-1", "url": "https://www.uniprot.org/uniprotkb/A0A480U521/entry#A0A287AN78-1", "sequence": { "sequence": "MAASCPLPVTPDLPTLRAKLHGLLRFLREALPISNAHTVDFYTESVWEQLVDLPPETVLAVLRRSAAEAEAQPSAARPLAEAQGGSDSTDFPKVFCETSQKLVSVEAFALAAKCYSVQNLGICTPLEQLLVALRGNQKQRTDKNVKPDEFMNLKKSHEVQAMSELISSVADYYGVKQIIDLGSGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWRVYHRRSKLDVSALALQTAKERKLQDEIECNAYAEGVGNSSTANQEKMSTSDFLPDFSGSVISNIRKQMENLHVHSHREENLYFENAFSVRDLLPINAIESTSSQTPKRKMLETNKERRKVTSKSNESNVYSPLTSFITADSELHDIIKDLEDCLMVGLHTCGDLAPNTLRIFASKSEIKGVCSVGCCYHLLSEEFENPHKECTQEKWGFPMCRSLKEGRWCCGRNARMSACLGTLICQFEFLKIIVATSIVY", "length": 477, "header": "tr|A0A287AN78-1|A0A480U521_PIG Computationally mapped isoform of Methyltransferase like 25 OS=Sus scrofa OX=9823 GN=METTL25 PE=4 SV=2 CANONICAL=A0A480U521-1" }, "locus": { "chromosome": "5", "start_pos": 99358550, "end_pos": 99291616, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038923.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038923.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045351.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045351.2" } ] } }, { "isoform_ac": "A0A287BJY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480U521/entry#A0A287BJY9-1", "sequence": { "sequence": "MAASCPLPVTPDLPTLRAKLHGLLRFLREALPISNAHTVDFYTESVWEQLVDLPPETVLAVLRRSAAEAEAQPSAARPLAEAQGGSDSTDFPKVFCETSQKLVSVEAFALAAKCYSVQNLGICTPLEQLLVALRGNQKQRTDKNVKPDEFMNLKKSHEVQAMSELISSVADYYGVKQIIDLGSGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWRVYHRRSKLDVSALALQTAKERKLQDEIECNAYAEGVGNSSTANQEKMSTSDFLPDFSGSVISNIRKQMENLHVHSHREENLYFENAFSVRDLLPINAIESTSSQTPKRKMLETNKERRKVTSKSNESNVYSPLTSFITADSELHDIIKDLEDCLMVGLHTCGDLAPNTLRIFASKSEIKGVCSVGCCYHLLSEEFENPHKECTQEKWGFPMCRSLKEGRWCCGRNARMSACLLPTESLFYRAVLQDIIKDCYGITKCDRHVGKLYSKSSSFLDYVRKSLKKLGLDESKLPEKVIMDYYEKYKPRMNELEAFNMLKVVLAPCIETLILLDRLCYLKEQEDIAWSALVKLFDPVKSPRCYALIALKKPQ", "length": 592, "header": "tr|A0A287BJY9-1|A0A480U521_PIG Computationally mapped isoform of Methyltransferase like 25 OS=Sus scrofa OX=9823 GN=METTL25 PE=4 SV=2 CANONICAL=A0A480U521-1" }, "locus": { "chromosome": "5", "start_pos": 99358550, "end_pos": 99261662, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043327.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043327.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056837.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056837.2" } ] } }, { "isoform_ac": "A0A480U521-1", "url": "https://www.uniprot.org/uniprotkb/A0A480U521/entry#A0A480U521-1", "sequence": { "sequence": "MAASCPLPVTPDLPTLRAKLHGLLRFLREALPISNAHTVDFYTESVWEQLVDLPPETVLAVLRRSAAEAEAQPSAARPLAEAQGGSDSTDFPKVFCETSQKLVSVEAFALAAKCYSVQNLGICTPLEQLLVALRGNQKQRTDKNVKPDEFMNLKKSHEVQAMSELISSVADYYGVKQIIDLGSGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWRVYHRRSKLDVSALALQTAKERKLQDEIECNAYAEGVGNSSTANQEKMSTSDFLPDFSGSVISNIRKQMENLHVHSHREENLYFENAFSVRDLLPINAIESTSSQTPKRKMLETNKERRKVTSKSNESNVYSPLTSFITADSELHDIIKDLEDCLMVGLHTCGDLAPNTLRIFASKSEIKGVCSVGCCYHLLSEEFENPHKECTQEKWGFPMCRSLKEGRWCCGRNARMSACLALERVAVGQGLPTESLFYRAVLQDIIKDCYGITKCDRHVGKLYSKSSSFLDYVRKSLKKLGLDESKLPEKVIMDYYEKYKPRMNELEAFNMLKVVLAPCIETLILLDRLCYLKEQEDIAWSALVKLFDPVKSPRCYALIALKKPQ", "length": 602, "header": "tr|A0A480U521-1|A0A480U521_PIG Isoform 1 of Methyltransferase like 25 OS=Sus scrofa OX=9823 GN=METTL25 PE=4 SV=1 CANONICAL=A0A480U521-1" }, "locus": { "chromosome": "5", "start_pos": 99358550, "end_pos": 99261662, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091491.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091491.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070604.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070604.2" } ] } }, { "isoform_ac": "A0A5G2QWR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480U521/entry#A0A5G2QWR8-1", "sequence": { "sequence": "MAASCPLPVTPDLPTLRAKLHGLLRFLREALPISNAHTVDFYTESVWEQLVDLPPETVLAVLRRSAAEAEAQPSAARPLAEAQGGSDSTDFPKVFCETSQKLVSVEAFALAAKCYSVQNLGICTPLEQLLVALRGNQKQRTDKNVKPDEFMNLKKSHEVQAMSELISSVADYYGVKQIIDLGSGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWRVYHRRSKLDVSALALQTAKERKLQDEIECNAYAEGVGNSSTANQEKMSTSDFLPDFSGSVISNIRKQMENLHVHSHREENLYFENAFSVRDLLPINAIESTSSQTPKRKMLETNKERRKVTSKSNESNVYSPLTSFITADSELHDIIKDLEDCLMVGLHTCGDLAPNTLRIFASKSEIKGVCSVGCCYHLLSEEFENPHKELEFPLWHSGQRIRLGTMRLRVRSLPLLSGLTIRRCQCTQEKWGFPMCRSLKEGRWCCGRNARMSAFFTELEQTMQKFIWNHKRPRTAKAILSNKNQAGGITLPDFRQYYKATVIKTVWYWYQNRQTDQWNRTENPEINPDACGQLIFDKGGKNIR", "length": 581, "header": "tr|A0A5G2QWR8-1|A0A480U521_PIG Computationally mapped isoform of Methyltransferase like 25 OS=Sus scrofa OX=9823 GN=METTL25 PE=4 SV=1 CANONICAL=A0A480U521-1" }, "locus": { "chromosome": "5", "start_pos": 99358550, "end_pos": 99297406, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076202.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076202.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069311.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069311.1" } ] } }, { "isoform_ac": "A0A5G2RDP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480U521/entry#A0A5G2RDP5-1", "sequence": { "sequence": "MAASCPLPVTPDLPTLRAKLHGLLRFLREALPISNAHTVDFYTESVWEQLVDLPPETVLAVLRRSAAEAEAQPSAARPLAEAQGGSDSTDFPKVFCETSQKLVSVEAFALAAKCYSVQNLGICTPLEQLLVALRGNQKQRTGKNVKPDEFMNLKKSHEVQAMSELISSVADYYGVKQIIDLGSGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWRVYHRRSKLDVSALALQTAKERKLQDEIECNAYAEGVGNSSTANQEKMSTSDFLPDFSGSVISNIRKQMENLHVHSHREENLYFENAFSVRDLLPINAIESTSSQTPKRKMLETNKERRKVTSKSNESNVYSPLTSFITADSELHDIIKDLEDCLMVGLHTCGDLAPNTLRIFASKSEIKGVCSVGCCYHLLSEEFENPHKECTQEKWGFPMCRSLKEGRWCCGRNARMSACLALERVAVGQGLPTESLFYRAVLQDIIKDCYGITKCDRHVGKLYSKSSSFLDYVRKSLKKLGLDESKLPEKVIMDYYEKYKPRMNELEAFNMLKVVLAPCIETLILLDRLCYLKEQEDIAWSALVKLFDPVKSPRCYALIALKKPQ", "length": 602, "header": "tr|A0A5G2RDP5-1|A0A480U521_PIG Computationally mapped isoform of Methyltransferase like 25 OS=Sus scrofa OX=9823 GN=METTL25 PE=4 SV=2 CANONICAL=A0A480U521-1" }, "locus": { "chromosome": "5", "start_pos": 99358550, "end_pos": 99261662, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077660.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077660.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068864.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068864.2" } ] } }, { "isoform_ac": "F1RYL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480U521/entry#F1RYL8-1", "sequence": { "sequence": "MAASCPLPVTPDLPTLRAKLHGLLRFLREALPISNAHTVDFYTESVWEQLVDLPPETVLAVLRRSAAEAEAQPSAARPLAEAQGGSDSTDFPKVFCETSQKLVSVEAFALAAKCYSVQNLGICTPLEQLLVALRGNQKQRTDKNVKPDEFMNLKKSHEVQAMSELISSVADYYGVKQIIDLGSGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWRVYHRRSKLDVSALALQTAKERKLQDEIECNAYAEGVGNSSTANQEKMSTSDFLPDFSGSVISNIRKQMENLHVHSHREENLYFENAFSVRDLLPINAIESTSSQTPKRKMLETNKERRKVTSKSNESNVYSPLTSFITADSELHDIIKDLEDCLMVGLHTCGDLAPNTLRIFASKSEIKGVCSVGCCYHLLSEEFENPHKECTQEKWGFPMCRSLKEGRWCCGRNARMSACLALERVAVGQGGTLICQFEFLKIIVATSIVY", "length": 487, "header": "tr|F1RYL8-1|A0A480U521_PIG Computationally mapped isoform of Methyltransferase like 25 OS=Sus scrofa OX=9823 GN=METTL25 PE=4 SV=4 CANONICAL=A0A480U521-1" }, "locus": { "chromosome": "5", "start_pos": 99358550, "end_pos": 99291616, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001030.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001030.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001008.5", "url": "https://www.ensembl.org/id/ENSSSCP00000001008.5" } ] } }, { "isoform_ac": "F1RYM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A480U521/entry#F1RYM0-1", "sequence": { "sequence": "MAASCPLPVTPDLPTLRAKLHGLLRFLREALPISNAHTVDFYTESVWEQLVDLPPETVLAVLRRSAAEAEAQPSAARPLAEAQGGSDSTDFPKVFCETSQKLVSVEAFALAAKCYSVQNLGICTPLEQLLVALRGNQKQRTDKNVKPDEFMNLKKSHEVQAMSELISSVADYYGVKQIIDLGSGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWRVYHRRSKLDVSALALQTAKERKLQDEIECNAYAEGVGNSSTANQEKMSTSDFLPDFSGSVISNIRKQMENLHVHSHREENLYFENAFSVRDLLPINAIESTSSQTPKRKMLETNKERRKVTSKSNESNVYSPLTSFITADSELHDIIKDLEDCLMVGLHTCGDLAPNTLRIFASKSEIKGVCSVGCCYHLLSEEFENPHKECTQEKWGFPMCRSLKEGRWCCGRNARMSACLKRTSWTWTTDVWLPRGWGSGMDREFGVNRCKLLPLE", "length": 493, "header": "tr|F1RYM0-1|A0A480U521_PIG Computationally mapped isoform of Methyltransferase like 25 OS=Sus scrofa OX=9823 GN=METTL25 PE=4 SV=3 CANONICAL=A0A480U521-1" }, "locus": { "chromosome": "5", "start_pos": 99358550, "end_pos": 99298692, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001029.4", "url": "https://www.ensembl.org/id/ENSSSCT00000001029.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001007.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001007.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWR8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWR8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GC39-1", "protein_name": "Methyltransferase like 25", "gene_name": "Mettl25", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLGARLLRPVLLPGREGVARPCWRHLQPWRASVMAAASPLPRAPDLPTLHATLQDLLSFLRGALAISSAHTVDFYTKSIWQELVDLPPESVLATLRKSAAEAELHETLPLGEAEAGSGFIDLPKIFCETSQKLLSVEAFVLTAKHYSVQNLGLCTPSEQLLTALRVNTEQRTDENVKAIEFMNTKKSHEVQAMSELICSIADYCGLKQSLRPGNCGRVRIPVRKSRETIVKIIDVGSGKGYLSSFLSLKYGLNVYGIDSSSTNTHGAKERNRKLKKHWNLCHSQSRADSNGLVLKMPKESKVQSRSKCEGESERVQKSRRGDEDASAGVLADFSGSPVSVIRKQQRNLHAHPVEEEKLCCEDAFSLVDFLPVDAIEPTSQVCHTEAPGLRKERGNATSKTRGSSIYSPLTSFITADTQLHDIIEDLEDCLMVGLHTCGDLAPNTLRIFASKAEVKGVCSVGCCYHLLSEEFENQHKGYAKENWGFPMCHYLKEERWCCGRNARMSACLALERVVVGQGLPTESLFYRAVLQNIIKDCYGISKCEQYVGKIYSKCSSFLEYVRVSLKKLGLDESKISAEIIMDYYEKYKPRMNELEAFNMLKVVLAPCIETLILLDRLCYLKEQEDIAWSALVKLFDPVQSPRCYAVIALKKQCDRS", "length": 656 }, "evidence": [ { "id": "A0A480U521", "url": "https://omabrowser.org/oma/group/A0A480U521/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0Y5K3-1", "protein_name": "Methyltransferase like 25", "gene_name": "METTL25", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRRTRGALPAQLPAAEAEEALRRLTRFLARALPLCRAHTTEFYVRGLWEQLVAARPEVVLQALRRPLPEASGSAAVLWDDDTFSDVFCENSKKLINVHLFALAARHYSLPNLGVCTPLEDILEALRGDSQGASGIKTDEFMNNKKSHEVQAMSELVDKIAKYCGVEQVIDIGSGKGYLSSFLSMQYNLKVYGIDSSKTNTNGAHERNRKLKKHWKTYQSRARGGSETQRLEKPMKSEVKCKTINEKPLSNNSSLQSQELGNTQDLVPSCVFTEVAISETSKQTEINLAQAQSDESKLSEEALAILSILPADAVEVFSSSHCNYGEICEEGKAQRKMAFIKAKVSKSSESNLYFPLTSYISAETELSDIITDLEDCIMVGLHTCGDLAANTLRIFTAKPEIKAVCSVGCCYHLLSEQYENQEDCTEEMWGFPMCQYLKDEGWCCGRNARMSACLALERVAVGQMLPTESLFYRAVLQVIIEETYGVTKSDRHVGKIFSKSSSFLDYVRKSLKKLELDDSKLPDSCIMDYYEKYKHRMNELEAFNMLKVVLAPCVEVLILLDRLCYLKEQNNIAWSGLVKLFDPVKSPRCYAVIALKKQSCL", "length": 600 }, "evidence": [ { "id": "A0A480U521", "url": "https://omabrowser.org/oma/group/A0A480U521/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AC58J8F9-1", "protein_name": "Probable methyltransferase-like protein 25 isoform X1", "gene_name": "mettl25", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMAFNDLHIVAVKKKIDEVKHFLSISLSISNAHTVDFYTRGVWSTFISVSPEDVLCAISSTQDSTGALEEKENTTFGFCNASKKLLDISALLRAAKAHCLPGLGVCMQLEELMHNLRLMCGDTAAGQSSNKVLAPDEFMNWKKAHEVQSMSEVVASLAKCCRVKQVIDVGSGKGYLCSYLSMRYNLQVFGIDSSTTNTHGAQERNRKLKKFSKAYQQHRFIENNCVQSNDESREHYNESDGSKNCITKQGVEAQTESSALSQQVTRDLLASNNAAECPLDPSDSDSGSSFLSLLALDVIEDVSLRVHPSKLSAEERERRKRENLERKAREGKRKDSNSSLFSPLTSYVTAETELKTLITELENAVLVGLHTCGDLASSSLRMFRAKQELRAVCSVGCCYHLLSEEFDQDRPGCTSDGVCGFPMSQYLKDQACFCGRNARMSACLALERVSAGGGLPMESLFYRAVLHVILQDHYDCFKSEKRVGNVYSKATSFADYVRRALRKLDLDESKLSDGDIQSYHDRYTPRMNEMVAFNMLKVTLAPCIEGLILLDRLCYLKEQENVSHAALVQLFDPLQSPRCYAVVADALCHILFCV", "length": 594 }, "evidence": [ { "id": "A0A480U521", "url": "https://omabrowser.org/oma/group/A0A480U521/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8N6Q8-1", "protein_name": "Probable methyltransferase-like protein 25", "gene_name": "METTL25", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAASCPLPVTPDLPTLRAKLQGLLQFLRDALSISNAHTVDFYTESVWEELVDLPPETVLAALRKSASETEALPSETRPLVEAEWEAGMTDFPKIFCETSQKLVSVEAFALAAKYYSVQNLGICTPFEQLLVALRGNQNQRIGENQKAVEFMNMKKSHEVQAMSELISSIADYYGIKQVIDLGSGKGYLSSFLSLKYGLKVYGIDSSNTNTHGAEERNRKLKKHWKLCHAQSRLDVNGLALKMAKERKVQNKVKNKADTEEVFNNSPTNQEKMPTSAILPDFSGSVISNIRNQMETLHSQPHQEENLCFENSFSLINLLPINAVEPTSSQQIPNRETSEANKERRKMTSKSSESNIYSPLTSFITADSELHDIIKDLEDCLMVGLHTCGDLAPNTLRIFTSNSEIKGVCSVGCCYHLLSEEFENQHKERTQEKWGFPMCHYLKEERWCCGRNARMSACLALERVAAGQGLPTESLFYRAVLQDIIKDCYGITKCDRHVGKIYSKCSSFLDYVRRSLKKLGLDESKLPEKIIMNYYEKYKPRMNELEAFNMLKVVLAPCIETLILLDRLCYLKEQEDIAWSALVKLFDPVKSPRCYAVIALKKQQ", "length": 603 }, "evidence": [ { "id": "A0A480U521", "url": "https://omabrowser.org/oma/group/A0A480U521/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "methyltransferase activity", "id": "GO:0008168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008168", "evidence": [ { "database": "UniProtKB", "id": "A0A480U521", "url": "https://www.uniprot.org/uniprotkb/A0A480U521" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "A0A480U521", "url": "https://www.uniprot.org/uniprotkb/A0A480U521" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 263, "end_pos": 265, "annotation": "n_glycosylation_sequon" }, { "start_pos": 350, "end_pos": 352, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480U521", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480U521" }, { "id": "PF13679", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13679" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Methyltransferase", "eco_id": "ECO_0000259", "start_pos": 154, "end_pos": 418, "start_aa": "Lys", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 263, "end_pos": 265 }, { "start_pos": 350, "end_pos": 352 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, 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"RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ALR6", "url": "https://www.uniprot.org/uniprotkb/A0A287ALR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B7W6", "url": "https://www.uniprot.org/uniprotkb/A0A287B7W6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B7W6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B7W6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIL7", "url": "https://www.uniprot.org/uniprotkb/A0A287BIL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIL7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480JZH7", "url": "https://www.uniprot.org/uniprotkb/A0A480JZH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": 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"MAGSLPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYATKWPIRHGIIEDWDLMERFMEQVIFKYLRAEPEDHYFLMTEPPLNTPENREYLAEILFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHAIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGVPPEQSLETAKAIKEKYCYICPDIVKEFAKYDVDPRRWIKQYTGINAINQKKFVVDVGYERFLGPEIFFHPEFANPDFMESISDVVDEVIQNCPIDVRRPLYKNVVLSGGSTMFRDFGRRLQRDLKRVVDARLKLSEELSGGRIKPKPVEVQVITHHMQRYAVWFGGSMLASTPEFFQVCHTKKDYEEYGPSICRHNPVFGVMS", "length": 418, "header": "tr|A0A480JZH7-1|A0A480JZH7_PIG Isoform 1 of Actin related protein 3B OS=Sus scrofa OX=9823 GN=ACTR3B PE=1 SV=1 CANONICAL=A0A480JZH7-1" }, "isoforms": [ { "isoform_ac": "A0A287ALR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZH7/entry#A0A287ALR6-1", "sequence": { "sequence": "MAGSLPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYATKWPIRHGIIEDWDLMERFMEQVIFKYLRAEPEDHYFLMTEPPLNTPENREYLAEILFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHAIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGVPPEQSLETAKAIKEKYCYICPDIVKEFAKYDVDPRRWIKQYTGINAINQKKFVVDVGYERFLGPEIFFHPEFANPDFMESISDVVDEVIQNCPIDVRRPLYKPEFFQVCHTKKDYEEYGPSICRHNPVFGVMS", "length": 348, "header": "tr|A0A287ALR6-1|A0A480JZH7_PIG Computationally mapped isoform of Actin related protein 3B OS=Sus scrofa OX=9823 GN=ACTR3B PE=1 SV=2 CANONICAL=A0A480JZH7-1" }, "locus": { "chromosome": "18", "start_pos": 4748081, "end_pos": 4686943, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044145.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044145.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044839.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044839.2" } ] } }, { "isoform_ac": "A0A287B7W6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZH7/entry#A0A287B7W6-1", "sequence": { "sequence": "MAGSLPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYATKWPIRHGIIEDWDLMERFMEQVIFKYLRAEPEDHYFLMTEPPLNTPENREYLAEILFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHAIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGVPPEQSLETAKAIKEKYCYICPDIVKEFAKYDVDPRRWIKQYTGINAINQKKFVVDVGYERFLGPEIFFHPEFANPDFMESISDVVDEVIQNCPIDVRRPLYKNVVLSGGSTMFRDFGRRLQRDLKRVVDARLKLSEELSGGRIKGSPSGLVQSRLLQSRLVRCCRCFWSRVLLETPEVNPGLQPGSFTESFQLCAEPALEVPSSLVMEGKESPWGSQVPRAGRPLCTRHSCQPLFTWVLLPLFYREAL", "length": 463, "header": "tr|A0A287B7W6-1|A0A480JZH7_PIG Computationally mapped isoform of Actin related protein 3B OS=Sus scrofa OX=9823 GN=ACTR3B PE=1 SV=2 CANONICAL=A0A480JZH7-1" }, "locus": { "chromosome": "18", "start_pos": 4748081, "end_pos": 4643258, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049532.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049532.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052198.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052198.2" } ] } }, { "isoform_ac": "A0A287BIL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZH7/entry#A0A287BIL7-1", "sequence": { "sequence": "YNNSLPPPPKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYATKWPIRHGIIEDWDLMERFMEQVIFKYLRAEPEDHYFLMTEPPLNTPENREYLAEILFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHAIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGVPPEQSLETAKAIKEKYCYICPDIVKEFAKYDVDPRRWIKQYTGINAINQKKFVVDVGYERFLGPEIFFHPEFANPDFMESISDVVDEVIQNCPIDVRRPLYKNVVLSGGSTMFRDFGRRLQRDLKRVVDARLKLSEELSGGRIKAGGVTVS", "length": 358, "header": "tr|A0A287BIL7-1|A0A480JZH7_PIG Computationally mapped isoform of Actin related protein 3B OS=Sus scrofa OX=9823 GN=ACTR3B PE=1 SV=2 CANONICAL=A0A480JZH7-1" }, "locus": { "chromosome": "18", "start_pos": 4731457, "end_pos": 4688124, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038100.2", "url": "https://www.ensembl.org/id/ENSSSCT00000038100.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055909.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055909.2" } ] } }, { "isoform_ac": "A0A480JZH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZH7/entry#A0A480JZH7-1", "sequence": { "sequence": "MAGSLPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYATKWPIRHGIIEDWDLMERFMEQVIFKYLRAEPEDHYFLMTEPPLNTPENREYLAEILFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHAIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGVPPEQSLETAKAIKEKYCYICPDIVKEFAKYDVDPRRWIKQYTGINAINQKKFVVDVGYERFLGPEIFFHPEFANPDFMESISDVVDEVIQNCPIDVRRPLYKNVVLSGGSTMFRDFGRRLQRDLKRVVDARLKLSEELSGGRIKPKPVEVQVITHHMQRYAVWFGGSMLASTPEFFQVCHTKKDYEEYGPSICRHNPVFGVMS", "length": 418, "header": "tr|A0A480JZH7-1|A0A480JZH7_PIG Isoform 1 of Actin related protein 3B OS=Sus scrofa OX=9823 GN=ACTR3B PE=1 SV=1 CANONICAL=A0A480JZH7-1" }, "locus": { "chromosome": "18", "start_pos": 4748081, "end_pos": 4686943, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051248.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051248.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052067.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052067.2" } ] } }, { "isoform_ac": "A0A5G2QYJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZH7/entry#A0A5G2QYJ9-1", "sequence": { "sequence": "LGLGEYTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYATKWPIRHGIIEDWDLMERFMEQVIFKYLRAEPEDHYFLMTEPPLNTPENREYLAEILFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHAIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGVPPEQSLETAKAIKEKYCYICPDIVKEFAKYDVDPRRWIKQYTGINAINQKKFVVDVGYERFLGPEIFFHPEFANPDFMESISDVVDEVIQNCPIDVRRPLYKNVVLSGGSTMFRDFGRRLQRDLKRVVDARLKLSEELSGGRIKPKPVEVQVITHHMQRYAVWFGGSMLASTPEFFQVCHTKKDYEEYGPSICRHNPVFGVMS", "length": 408, "header": "tr|A0A5G2QYJ9-1|A0A480JZH7_PIG Computationally mapped isoform of Actin related protein 3B OS=Sus scrofa OX=9823 GN=ACTR3B PE=1 SV=2 CANONICAL=A0A480JZH7-1" }, "locus": { "chromosome": "18", "start_pos": 4731039, "end_pos": 4686943, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069452.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069452.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069953.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069953.2" } ] } }, { "isoform_ac": "A0A8W4F9J0-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZH7/entry#A0A8W4F9J0-1", "sequence": { "sequence": "MFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHAIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGVPPEQSLETAKAIKEKYCYICPDIVKEFAKYDVDPRRWIKQYTGINAINQKKFVVDVGYERFLGPEIFFHPEFANPDFMESISDVVDEVIQNCPIDVRRPLYKVQAAWVRCLGFIPQLKAQRSQTNRVLPSICSIAVPLLFYRICQRQVHW", "length": 236, "header": "tr|A0A8W4F9J0-1|A0A480JZH7_PIG Computationally mapped isoform of Actin related protein 3B OS=Sus scrofa OX=9823 GN=ACTR3B PE=1 SV=2 CANONICAL=A0A480JZH7-1" }, "locus": { "chromosome": "18", "start_pos": 4707210, "end_pos": 4697666, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097138.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097138.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075496.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075496.1" } ] } }, { "isoform_ac": "F1SSP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JZH7/entry#F1SSP6-1", "sequence": { "sequence": "YNNSLPPPPKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYATKWPIRHGIIEDWDLMERFMEQVIFKYLRAEPEDHYFLMTEPPLNTPENREYLAEILFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHAIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGVPPEQSLETAKAIKEKYCYICPDIVKEFAKYDVDPRRWIKQYTGINAINQKKFVVDVGYERFLGPEIFFHPEFANPDFMESISDVVDEVIQNCPIDVRRPLYKNVVLSGGSTMFRDFGRRLQRDLKRVVDARLKLSEELSGGRIKPKPVEVQVITHHMQRYAVWFGGSMLASTVSPFRECSMCSFLCPLQSLNKYCLTEVKLCVFLLCSSKRLYI", "length": 421, "header": "tr|F1SSP6-1|A0A480JZH7_PIG Computationally mapped isoform of Actin related protein 3B OS=Sus scrofa OX=9823 GN=ACTR3B PE=1 SV=5 CANONICAL=A0A480JZH7-1" }, "locus": { "chromosome": "18", "start_pos": 4731457, "end_pos": 4687373, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017887.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017887.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017406.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017406.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYJ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LNX1-1", "protein_name": "Actin-related protein 3", "gene_name": "ACTR3B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGSLPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYATKWPIRHGIIEDWDLMERFMEQVIFKYLRAEPEDHYFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHAIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREAGIPPEQSLETAKAIKEKYCYICPDIVKEFAKYDVDPRKWIKQYTGVNAINQKKFVIDVGYERFLGPEIFFHPEFANPDFMESISEVVDEVIQNCPIDVRRPLYKNVVLSGGSTMFRDFGRRLQRDLKRVVDARLKLSEELSGGRIKPKPVEVQVITHHMQRYAVWFGGSMLASTPEFLQVCHTKKDYEECGPSICRHNPVFGVMS", "length": 418 }, "evidence": [ { "id": "A0A480JZH7", "url": "https://omabrowser.org/oma/group/A0A480JZH7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8I6GL35-1", "protein_name": "Actin related protein 3B", "gene_name": "Actr3b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGSLPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYATKWPIRHGIVEDWDLMERFMEQVVFKYLRAEPEDHYFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYICPDIVKEFAKYDVDPRKWIKQYTGINAINQRKFIIDVGYERFLGPEIFFHPEFANPDFMESISDVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRVVDARLKLSQELSGGRIKPKPVEVQVITHHMQRYAVWFGGSMLASTPEFFQVCHTKKDYEEYGPSICRHNPVFGVMS", "length": 418 }, "evidence": [ { "id": "A0A480JZH7", "url": "https://omabrowser.org/oma/group/A0A480JZH7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q641P0-1", "protein_name": "Actin-related protein 3B", "gene_name": "Actr3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGSLPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYATKWPIRHGIVEDWDLMERFMEQVVFKYLRAEPEDHYFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYICPDIVREFAKYDVDPRKWIKQYTGINAINQKKFIIDVGYERFLGPEIFFHPEFANPDFMESISDVVDEVIQSCPIDVRRPLYKNVVLSGGSTMFRDFGRRLQRDLKRVVDARLKLSQELSGGRIKPKPVEVQVVTHHMQRYAVWFGGSMLASTPEFFQVCHTKKDYEEYGPSICRHNPVFGVMS", "length": 418 }, "evidence": [ { "id": "A0A480JZH7", "url": "https://omabrowser.org/oma/group/A0A480JZH7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C0K3-1", "protein_name": "Actin-related protein 3C", "gene_name": "ACTR3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYICPDIVKEFAKYDVDPQKWIKQYTGINAINQKKFVIDVGYERFLGPEIFFHPEFANPDSMESISDVVDEVIQNCPIDVRRPLYKMEQIPLSYPQGHGFHPLSPPFH", "length": 210 }, "evidence": [ { "id": "A0A480JZH7", "url": "https://omabrowser.org/oma/group/A0A480JZH7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9P1U1-1", "protein_name": "Actin-related protein 3B", "gene_name": "ACTR3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGSLPPCVVDCGTGYTKLGYAGNTEPQFIIPSCIAIRESAKVVDQAQRRVLRGVDDLDFFIGDEAIDKPTYATKWPIRHGIIEDWDLMERFMEQVVFKYLRAEPEDHYFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYICPDIVKEFAKYDVDPRKWIKQYTGINAINQKKFVIDVGYERFLGPEIFFHPEFANPDFMESISDVVDEVIQNCPIDVRRPLYKNVVLSGGSTMFRDFGRRLQRDLKRVVDARLRLSEELSGGRIKPKPVEVQVVTHHMQRYAVWFGGSMLASTPEFFQVCHTKKDYEEYGPSICRHNPVFGVMS", "length": 418 }, "evidence": [ { "id": "A0A480JZH7", "url": "https://omabrowser.org/oma/group/A0A480JZH7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A480JZH7", "url": "https://www.uniprot.org/uniprotkb/A0A480JZH7" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A480JZH7", "url": "https://www.uniprot.org/uniprotkb/A0A480JZH7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A480JZH7", "url": "https://www.uniprot.org/uniprotkb/A0A480JZH7" } ], "pmid": "" }, { "name": "cell projection", "id": "GO:0042995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042995", "evidence": [ { "database": "UniProtKB", "id": "A0A480JZH7", "url": "https://www.uniprot.org/uniprotkb/A0A480JZH7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", 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"title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480VVI3-1", "uniprot_ac": "A0A480VVI3", "uniprot_id": "A0A480VVI3_PIG", "mass": { "chemical_mass": 71261.0, "monoisotopic_mass": 71261.0 }, "refseq": { "ac": "XP_005657365", "name": "F-box only protein 21 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657365" }, "gene_names": [ { "name": "FBXO21", "type": "recommended", "evidence": [ { "id": "A0A480VVI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480VVI3" } ] }, { "name": "FBXO21", "type": "synonym", "evidence": [ { "id": "XP_005657365", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657365" } ] } ], "protein_names": [ { "name": "F-box only protein 21 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_005657365", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657365" } ] }, { "name": "F-box protein 21", "type": "synonym", "evidence": [ { "id": "A0A480VVI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480VVI3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480VVI3", "url": "https://www.uniprot.org/uniprotkb/A0A480VVI3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBXO21", "url": "https://www.uniprot.org/uniprotkb/A0A480VVI3", "locus": { "chromosome": "14", "start_pos": 35356842, "end_pos": 35313629, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009858", "url": "https://www.ensembl.org/id/ENSSSCG00000009858" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009858", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009858", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22096", 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Classification" ] }, { "id": "KQPFYNV", "url": "https://omabrowser.org/oma/group/KQPFYNV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480VVI3", "url": "https://www.orthodb.org/?gene=A0A480VVI3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31350", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31350", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31350:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31350:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08755", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08755", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13369", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13369", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005657365", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657365", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AM57", "url": "https://www.uniprot.org/uniprotkb/A0A287AM57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AM57-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AM57-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480VVI3", "url": "https://www.uniprot.org/uniprotkb/A0A480VVI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480VVI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480VVI3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAAVDSAMEVVPALAEEAAPEAAGLSCLVNLPGEVLEYILCSGSLTAADIGRVSSTCRRLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKRFFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDNIVELVCKTLRGINSRHPSLAFKAGESAMIMEIELQSQVLDAINYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGIPISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTVKECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYPDQVQLLLLQARLYFHLGIWPEKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVGVEVKLRSHEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPEDLESVYETVQNIYSAKKENVE", "length": 620, "header": "tr|A0A480VVI3-1|A0A480VVI3_PIG Isoform 1 of F-box protein 21 OS=Sus scrofa OX=9823 GN=FBXO21 PE=1 SV=1 CANONICAL=A0A480VVI3-1" }, "isoforms": [ { "isoform_ac": "A0A287AM57-1", "url": "https://www.uniprot.org/uniprotkb/A0A480VVI3/entry#A0A287AM57-1", "sequence": { "sequence": "MGTGNAVFLLPRQGHGVSKCCFSPCRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKRFFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDNIVELVCKTLRGINSRHPSLAFKAGESAMIMEIELQSQVLDAINYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGIPISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTVKECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYPDQVQLLLLQARLYFHLGIWPEKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVGVEVKLRSHEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSCRYAAQEPRLPWDTEQGGLPRQLFSGPVSKDRASSGWSPGLGLWPARKGPRRSRLVGRSHLKGFGPLRELGV", "length": 570, "header": "tr|A0A287AM57-1|A0A480VVI3_PIG Computationally mapped isoform of F-box protein 21 OS=Sus scrofa OX=9823 GN=FBXO21 PE=1 SV=2 CANONICAL=A0A480VVI3-1" }, "locus": { "chromosome": "14", "start_pos": 35350730, "end_pos": 35314559, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048207.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048207.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044994.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044994.2" } ] } }, { "isoform_ac": "A0A480VVI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480VVI3/entry#A0A480VVI3-1", "sequence": { "sequence": "MAAAAVDSAMEVVPALAEEAAPEAAGLSCLVNLPGEVLEYILCSGSLTAADIGRVSSTCRRLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKRFFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDNIVELVCKTLRGINSRHPSLAFKAGESAMIMEIELQSQVLDAINYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGIPISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTVKECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYPDQVQLLLLQARLYFHLGIWPEKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVGVEVKLRSHEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPEDLESVYETVQNIYSAKKENVE", "length": 620, "header": "tr|A0A480VVI3-1|A0A480VVI3_PIG Isoform 1 of F-box protein 21 OS=Sus scrofa OX=9823 GN=FBXO21 PE=1 SV=1 CANONICAL=A0A480VVI3-1" }, "locus": { "chromosome": "14", "start_pos": 35350902, "end_pos": 35313659, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010806.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010806.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010523.5", "url": "https://www.ensembl.org/id/ENSSSCP00000010523.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AM57", "url": "https://www.uniprot.org/uniprotkb/A0A287AM57" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "F1M5Q6-1", "protein_name": "F-box protein 21", "gene_name": "Fbxo21", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAVAGDSAMEVVPALAEEAAAEASGPSCLVQLPGEVLEYILCSGSLTALDIGRVSSTCRRLREVCQSSGQVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKRFFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLRDIQAQIHSIVELVCKTLRGINSRHPSLTFRAGESSMIMEIELQSQVLDAINYVLYDQLKFKGNRMDYYNALNLYMHQVLTRRTGIPISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTVKECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYPDQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVGVEVKLRSEEKHRDVCYSIGLVMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPEDLEFVYETVQNIYSAKEDTAE", "length": 627 }, "evidence": [ { "id": "A0A480VVI3", "url": "https://omabrowser.org/oma/group/A0A480VVI3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O94952-2", "protein_name": "F-box only protein 21", "gene_name": "FBXO21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCRRLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKRFFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHPSLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGIPISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTVKECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYPDQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVGVEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPEDLEFVYETVQNIYSAKKENIDE", "length": 628 }, "evidence": [ { "id": "A0A480VVI3", "url": "https://omabrowser.org/oma/group/A0A480VVI3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VDH1-1", "protein_name": "F-box only protein 21", "gene_name": "Fbxo21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASVAGDSAMEVVPALAEEAAAEATGPSCLVQLPGEVLEYILCSGSLTALDIGRVSSTCRRLREVCQSSGQVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKRFFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISFRDIQAQIHSIVELVCKTLRGINSRHPSLTFRAGESSMIMEIELQSQVLDAINYVLYDQLKFKGNRMDYYNALNLYMHQVLTRRTGIPISMSLLYLTVARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTVKECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYPDQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVGVEVKLRSEEKHRDVCYSIGLVMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPEDLEFVYETVQNIYSAKEDTAE", "length": 627 }, "evidence": [ { "id": "A0A480VVI3", "url": "https://omabrowser.org/oma/group/A0A480VVI3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": 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"sequence": "MAMGAWGLRLWRAVPRGEAGWRLIATSPASQLSPTELIEMQNDLFNKEKNRQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDDDPGEVNKAYWRSCAMMMGCVIERAFKDEYVVSLVRAPEVPVIAGAFCYDVVLDKRLDEWMPTKENLHSFTKDARALIYKDLPFETLEVEAKVALEIFQHNKYKLDFIEEKASQNPERIVKLHRFGDFIDVSEGPLIPRTSICFQYEVSAVHNLQTQSSLVRRFQGLSLPVHLRVSRVNISGLPLGMGVGVILVLVFIPI", "length": 329, "header": "tr|A0A480W4M0-1|A0A480W4M0_PIG Isoform 1 of Large ribosomal subunit protein mL39 OS=Sus scrofa OX=9823 GN=MRPL39 PE=1 SV=1 CANONICAL=A0A480W4M0-1" }, "isoforms": [ { "isoform_ac": "A0A287ANF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480W4M0/entry#A0A287ANF1-1", "sequence": { "sequence": "MAMGAWGLRLWRAVPRGEAGWRLIATSPASQLSPTELIEMQNDLFNKEKNRQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDDDPGEVNKAYWRSCAMMMGCVIERAFKDEYVVSLVRAPEVPVIAGAFCYDVVLDKRLDEWMPTKENLHSFTKDARALIYKDLPFETLEVEAKVALEIFQHNKYKLDFIEEKASQNPERIVKLHRFGDFIDVSEGPLIPRTSICFQYEVSAVHNLQTQSSLVRRFQGLSLPVHLRGVARGGGAHTDKTFWNAF", "length": 321, "header": "tr|A0A287ANF1-1|A0A480W4M0_PIG Computationally mapped isoform of Large ribosomal subunit protein mL39 OS=Sus scrofa OX=9823 GN=MRPL39 PE=1 SV=2 CANONICAL=A0A480W4M0-1" }, "locus": { "chromosome": "13", "start_pos": 189165773, "end_pos": 189153363, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041542.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041542.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045414.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045414.2" } ] } }, { "isoform_ac": "A0A287BI43-1", "url": "https://www.uniprot.org/uniprotkb/A0A480W4M0/entry#A0A287BI43-1", "sequence": { "sequence": "KEAMAMGAWGLRLWRAVPRGEAGWRLIATSPASQLSPTELIEMQNDLFNKEKNRQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDDDPGEVNKAYWRSCAMMMGCVIERAFKDEYVVSLVRAPEVPVIAGAFCYDVVLDKRLDEWMPTKENLHSFTKDARALIYKDLPFETLEVEAKVALEIFQHNKYKLDFIEEKASQNPERIVKLHRFGDFIDVSEGPLIPRTSICFQYEVSAVHNLQTQSSLVRRFQGLSLPVHLRAHFTIWNKLLERSRKMVTEDKTKPTEESAST", "length": 337, "header": "tr|A0A287BI43-1|A0A480W4M0_PIG Computationally mapped isoform of Large ribosomal subunit protein mL39 OS=Sus scrofa OX=9823 GN=MRPL39 PE=1 SV=3 CANONICAL=A0A480W4M0-1" }, "locus": { "chromosome": "13", "start_pos": 189165782, "end_pos": 189148888, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037563.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037563.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056204.3", "url": "https://www.ensembl.org/id/ENSSSCP00000056204.3" } ] } }, { "isoform_ac": "A0A480W4M0-1", "url": 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"url": "https://www.uniprot.org/uniprotkb/A0A480W4M0/entry#A0A8D1P0I0-1", "sequence": { "sequence": "MQNDLFNKEKNRQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDDDPGEVNKAYWRSCAMMMGCVIERAFKDEYVVSLVRAPEVPVIAGAFCYDVVLDKRLDEWMPTKENLHSFTKDARALIYKDLPFETLEVEAKVALEIFQHNKYKLDFIEEKASQNPERIVKLHRFGDFIDVSEGPLIPRTSICFQYEVSAVHNLQTQSSLVRRFQGLSLPVHLRAHFTIWNKLLERSRKMVSVFNSL", "length": 287, "header": "tr|A0A8D1P0I0-1|A0A480W4M0_PIG Computationally mapped isoform of Large ribosomal subunit protein mL39 OS=Sus scrofa OX=9823 GN=MRPL39 PE=1 SV=1 CANONICAL=A0A480W4M0-1" }, "locus": { "chromosome": "13", "start_pos": 189164844, "end_pos": 189151735, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051244.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051244.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044090.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044090.2" } ] } }, { "isoform_ac": "F1SHP6-1", "url": 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Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHP6", "url": "https://www.uniprot.org/uniprotkb/F1SHP6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.", "journal": "EMBO J.", "date": "2020", "authors": "Kummer E, Ban N", "evidence": [ { "database": "UniProtKB", "id": "F1SHP6", "url": "https://www.uniprot.org/uniprotkb/F1SHP6" } ], "reference": [ { "type": "PubMed", "id": "32602580", "url": "https://glygen.org/publication/PubMed/32602580" } ] }, { "title": "Structural basis of translation termination, rescue, and recycling in mammalian mitochondria.", "journal": "Mol. 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"MTCFDCVRLRPAPRWRTGSFGTRGEGVSRVGFTNKNVKQRRWRPNHPQAFAGSVREGQGFAFRRKLKIQQNYKKLLWRKKATQTSQDSQFTDKYPDHLKHLYLAEEERLRKQLKKVHPSLLERADQPPSEEQVDRPLPEEPCSTDQALSEEQCSVEQPQPEEQSNLRVNSITISKKNKKKTSNQKAQEEYERIQAKRAAKKQEFERRKQEREEAQRLYKKKKMEVFKILSKKTKKGQPNLNLQMEYLLKKIQEKH", "length": 255, "header": "tr|A0A287ANT3-1|A0A480TXL1_PIG Computationally mapped isoform of Coiled-coil domain containing 59 OS=Sus scrofa OX=9823 GN=CCDC59 PE=4 SV=2 CANONICAL=A0A480TXL1-1" }, "locus": { "chromosome": "5", "start_pos": 99363906, "end_pos": 99358682, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064425.2", "url": "https://www.ensembl.org/id/ENSSSCT00000064425.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045671.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045671.2" } ] } }, { "isoform_ac": "A0A480TXL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TXL1/entry#A0A480TXL1-1", "sequence": { "sequence": "MAPVRPAPRWRTGSFGTRGEGVSRVGFTNKNVKQRRWRPNHPQAFAGSVREGQGFAFRRKLKIQQNYKKLLWRKKATQTSQDSQFTDKYPDHLKHLYLAEEERLRKQLKKVHPSLLERADQPPSEEQVDRPLPEEPCSTDQALSEEQCSVEQPQPEEQSNLRVNSITISKKNKKKTSNQKAQEEYERIQAKRAAKKQEFERRKQEREEAQRLYKKKKMEVFKILSKKTKKGQPNLNLQMEYLLKKIQEKH", "length": 250, "header": "tr|A0A480TXL1-1|A0A480TXL1_PIG Isoform 1 of Coiled-coil domain containing 59 OS=Sus scrofa OX=9823 GN=CCDC59 PE=4 SV=1 CANONICAL=A0A480TXL1-1" }, "locus": { "chromosome": "5", "start_pos": 99363906, "end_pos": 99358737, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106782.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106782.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077333.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077333.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANT3", "url": "https://www.uniprot.org/uniprotkb/A0A287ANT3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511567", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511567", "resource": "KEGG Pathway" }, { "id": "R-SSC-5683826", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5683826", "resource": "Reactome", "description": "Surfactant metabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IFS1-1", "protein_name": "Thyroid transcription factor 1-associated protein 26", "gene_name": "LOC100765463", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAPVRPSSKWRAGGFAAREEGTPQVASKNHSGKRRTWRPSHQQAFPGSVREGQGFAFRRKLKIQQNYKKLLWKVKKASTSQESQFTDHYPDHLKHLYLAEEERLKKQRRKVGLPPSEEQVDQPVPEEECNTEQTLSEKQSSDHQSQPEQLCTPNSVTVPKKKKTSNQKAQEEYERIQAKRAAKKFEFEMRKREREEAQRLYKKKKMEAFKVLSKKTRKGQPNLNLQMEYLLQKIQETS", "length": 238 }, "evidence": [ { "id": "A0A480TXL1", "url": "https://omabrowser.org/oma/group/A0A480TXL1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0Y7S2-1", "protein_name": "Coiled-coil domain containing 59", "gene_name": "CCDC59", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAARRAVTEHGAVESVGGAARRPQRKRLWRPTAIHGLLGSVQQGRGFAFRRKQKIERKYRKLLKKEQKICSPQADQFTDTYPEHLKHLYLAEEERLKKQHKSPNHSVLSEERLNKAVEPVTTEGKFKKKTSNQKAKEEYEKIQAERAKKREEAEKRRQQKEAAQRLYKQKKMEAYKVLSKKTKKGQPNLNAQMEFLLQKIQQKT", "length": 205 }, "evidence": [ { "id": "A0A480TXL1", "url": "https://omabrowser.org/oma/group/A0A480TXL1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A5PJN1-1", "protein_name": "Thyroid transcription factor 1-associated protein 26", "gene_name": "CCDC59", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAPVWPAARGRTGGLGTRGRVSPVEFRNKNVKRKTWRPNHLQAFAGSVREGQGFAFRRKLKIQQTYKKLLRREKKSQTPSESPFTDWYPDHLKHLYLAEEERLKKQLRKADQPLSEEQVDQPLPEDQGSSDQALSEERCSIEQPQPAEPCSIRINSINIPKKNKKKTSNQKAQEEYEQIQAKRAAKKQEFERRKQEREEAQRLYKKKKMEVFKILSKKTKKGQPNLNLQMEYLLKKIQENN", "length": 241 }, "evidence": [ { "id": "A0A480TXL1", "url": "https://omabrowser.org/oma/group/A0A480TXL1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4ADF2-1", "protein_name": "Coiled-coil domain containing 59", "gene_name": "Ccdc59", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPGRPSSRLRTGGFAARGEGTPQVRFGNQNGKRRTWRPNHQQAFLGSVREGQGFAFRRKLKIQQNYKKLLWKVKKAPASQGSQFEDHYPEHLKHLYLAEEERLRKQQRKVDLALSEGQLDQPLPEEEGNTEQAVSEEQSSVFQPQPEEPSTVNSVTFPKKKRKKTSNQKAQEEYERVQAKRAAKKFEFEMRKQEREEAQRLYKKKKMEAFKILSKKTKKGQPNLNLQMEYLLQKIQENS", "length": 240 }, "evidence": [ { "id": "A0A480TXL1", "url": "https://omabrowser.org/oma/group/A0A480TXL1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5RGP9-1", "protein_name": "Thyroid transcription factor 1-associated protein 26 homolog", "gene_name": "ccdc59", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAPFKQNAKNKGPIRGKQFNNKFQRGGLSHNAKRKRKWVPEDKVFDGSLKEGQGFAFKRKEKVKHEYNKLLRKERKRKQESKVQLQEEYPEHLKHLYLAERERLDEEEQEKKKKRCKGRAVEEDIEEDDDKLNKDLGSSSSEKNITNTSTDQTIAPASSNEPAQPESSHKTTFFQRKQNISSYQKTKQEYERIKEERARKREEILKDKAQREEALKKYKEKKIATYQLLKRKTKKGQPNLNLQMELLLQKIQAQRK", "length": 256 }, "evidence": [ { "id": "A0A480TXL1", "url": "https://omabrowser.org/oma/group/A0A480TXL1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8R2N0-1", "protein_name": "Thyroid transcription factor 1-associated protein 26", "gene_name": "Ccdc59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPSRPSSKWRTGGFAARGEGISQVRFGNQNGKRRTWRPNPQQAFRGSVRKGQGFAFRRKLKIQQNYKKLLWKVKEAPASQESQFTDRYPEHLKHLYLAEEERLRKQQRKAGLALSEEQVDRPLPEEEGSTEQTSSEEPPGGHQPQPEELNTGSSVTFPKNKKKKTSNQKAQEEYERVQAKRAAKKFEFEMRKQEREEAQRLYKKKKMEAFKILSKKTKKGQPNLNLQMEYLLQKIQENS", "length": 240 }, "evidence": [ { "id": "A0A480TXL1", "url": "https://omabrowser.org/oma/group/A0A480TXL1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9P031-1", "protein_name": "Thyroid transcription factor 1-associated protein 26", "gene_name": "CCDC59", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPVRRSAKWRPGGIEARGEGVSTVGYRNKNVRQKTWRPNHPQAFVGSVREGQGFAFRRKLKIQQSYKKLLRKEKKAQTSLESQFTDRYPDNLKHLYLAEEERHRKQARKVDHPLSEQVHQPLLEEQCSIDEPLFEDQCSFDQPQPEEQCIKTVNSFTIPKKNKKKTSNQKAQEEYEQIQAKRAAKKQEFERRKQEREEAQRQYKKKKMEVFKILNKKTKKGQPNLNVQMEYLLQKIQEKC", "length": 241 }, "evidence": [ { "id": "A0A480TXL1", "url": "https://omabrowser.org/oma/group/A0A480TXL1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480TXL1", "url": "https://www.uniprot.org/uniprotkb/A0A480TXL1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A481B9G9-1", "uniprot_ac": "A0A481B9G9", "uniprot_id": "A0A481B9G9_PIG", "mass": { "chemical_mass": 117730.0, "monoisotopic_mass": 117730.0 }, "refseq": { "ac": "XP_020928532", "name": "probable E3 ubiquitin-protein ligase HERC4 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928532" }, "gene_names": [ { "name": "HERC4", "type": "recommended", "evidence": [ { "id": "A0A481B9G9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9" } ] }, { "name": "HERC4", "type": "synonym", "evidence": [ { "id": "XP_020928532", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928532" } ] } ], "protein_names": [ { "name": "Probable E3 ubiquitin-protein ligase HERC4", "type": "recommended", "evidence": [ { "id": "A0A481B9G9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.26", "type": "synonym", "evidence": [ { "id": "A0A481B9G9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9/entry#names_and_taxonomy" } ] }, { "name": "HECT domain and RCC1-like domain-containing protein 4", "type": "synonym", "evidence": [ { "id": "A0A481B9G9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9/entry#names_and_taxonomy" } ] }, { "name": "HECT-type E3 ubiquitin transferase HERC4", "type": "synonym", "evidence": [ { "id": "A0A481B9G9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9/entry#names_and_taxonomy" } ] }, { "name": "probable E3 ubiquitin-protein ligase HERC4 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020928532", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928532" } ] } ], "function": [ { "annotation": "Probable E3 ubiquitin-protein ligase involved in either protein trafficking or in the distribution of cellular structures. Required for spermatozoon maturation and fertility, and for the removal of the cytoplasmic droplet of the spermatozoon. E3 ubiquitin-protein ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer it to targeted substrates.", "evidence": [ { "database": "UniProtKB", "id": "A0A481B9G9", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9#function" }, { "database": "UniProtKB", "id": "ARBA00054628", "url": "https://www.uniprot.org/uniprotkb/ARBA00054628#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A481B9G9", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HERC4", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9", "locus": { "chromosome": "14", "start_pos": 71122792, "end_pos": 71269424, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038913", "url": "https://www.ensembl.org/id/ENSSSCG00000038913" } ] } } ], "crossref": [ { "id": "ENSSSCG00000038913", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038913", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00078", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00078", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102167519", "url": "https://www.ncbi.nlm.nih.gov/gene/102167519", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000408", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000408", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000569", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000569", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009091", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009091", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051709", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051709", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058923", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058923", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45622", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45622", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45622:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45622:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00632", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00632", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25390", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25390", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020928532", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928532", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AP80", "url": "https://www.uniprot.org/uniprotkb/A0A287AP80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AP80-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP80-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEN4", "url": "https://www.uniprot.org/uniprotkb/A0A287BEN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEN4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481B9G9", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481B9G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3Z6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3Z6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3Z6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGTEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQSSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWFPYNGQCPPDFDSEEYFCVKRIFSGGDQSFSHYSNPQNCGPPDDFRFSDPSKQIWTVNEALIQKWLSYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGTRFSGVDMNAARLLFHKLIQPDHPQISQQVAASLEKNLIPKLTSSLPDVEALRFYLTLPECPLMSDSNNFTTIAIPFGTALVNLEKAPLKVLENWWSVLEPPLFLKIVELFKEVVVHLLKLYKIGIPPSERRIFNSFLHTALKVLEILHRVNEKTGQIIQYDKFYIHEVQELIDIRNDYINWVQQQAYGMLADIPVTICTYPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLFLPVIESVNPCLILVVRRENIVGDAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSRLIWFSDKTFEDSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKKKPSLDDLKELVPDVGRSMQQLLDYPEDDVEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLQLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWAEHPTIKMFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLILVIQSTGGGEEYLPVSHTCFNLLDLPKYTDKETLRSKLIQAIDHNEGFSLI", "length": 1049, "header": "tr|A0A481B9G9-1|A0A481B9G9_PIG Isoform 1 of Probable E3 ubiquitin-protein ligase HERC4 OS=Sus scrofa OX=9823 GN=HERC4 PE=4 SV=1 CANONICAL=A0A481B9G9-1" }, "isoforms": [ { "isoform_ac": "A0A287AP80-1", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9/entry#A0A287AP80-1", "sequence": { "sequence": "MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGTEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQSSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWFPYNGQCPPDFDSEEYFCVKRIFSGGDQSFSHYSNPQNCGPPDDFRFSDPSKQIWTVNEALIQKWLSYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGTRFSGVDMNAARLLFHKLIQPDHPQISQQVAASLEKNLIPKLTSSLPDVEALRFYLTLPECPLMSDSNNFTTIAIPFGTALVNLEKAPLKVLENWWSVLEPPLFLKIVELFKEVVVHLLKLYKIGIPPSERRIFNSFLHTALKVLEILHRVNEKTGQIIQYDKFYIHEVQELIDIRNDYINWVQQQAYGMLADIPVTICTYPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLFLPVIESVNPCLILVVRRENIVGDAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSRLIWFSDKTFEDSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKKKPSLDDLKELVPDVGRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLQLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWAEHPTIKMFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLILVIQSTGGGEEYLPVSHTCFNLLDLPKYTDKETLRSKLIQAIDHNEGFSLI", "length": 999, "header": "tr|A0A287AP80-1|A0A481B9G9_PIG Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HERC4 OS=Sus scrofa OX=9823 GN=HERC4 PE=4 SV=3 CANONICAL=A0A481B9G9-1" }, "locus": { "chromosome": "14", "start_pos": 71267234, "end_pos": 71126561, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040035.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040035.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045823.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045823.3" } ] } }, { "isoform_ac": "A0A287BEN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9/entry#A0A287BEN4-1", "sequence": { "sequence": "MGIDTLVRTCSGLSYGRIRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQSSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWFPYNGQCPPDFDSEEYFCVKRIFSGGDQSFSHYSNPQNCGPPDDFRFSDPSKQIWTVNEALIQKWLSYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGTRFSGVDMNAARLLFHKLIQPDHPQISQQVAASLEKNLIPKLTSSLPDVEALRFYLTLPECPLMSDSNNFTTIAIPFGTALVNLEKAPLKVLENWWSVLEPPLFLKIVELFKEVVVHLLKLYKIGIPPSERRIFNSFLHTALKVLEILHRVNEKTGQIIQYDKFYIHEVQELIDIRNDYINWVQQQAYGMDVNHGLTELADIPVTICTYPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLFLPVIESVNPCLILVVRRENIVGDAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSRLIWFSDKTFEDSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKKKPSLDDLKELVPDVGRSMQQLLDYPEDDVEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLQLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWAEHPTIKMFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLILVIQSTGGGEEYLPVSHTCFNLLDLPKYTDKETLRSKLIQAIDHNEGFSLI", "length": 947, "header": "tr|A0A287BEN4-1|A0A481B9G9_PIG Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HERC4 OS=Sus scrofa OX=9823 GN=HERC4 PE=4 SV=3 CANONICAL=A0A481B9G9-1" }, "locus": { "chromosome": "14", "start_pos": 71233817, "end_pos": 71126561, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047111.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047111.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054542.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054542.3" } ] } }, { "isoform_ac": "A0A481B9G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9/entry#A0A481B9G9-1", "sequence": { "sequence": "MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGTEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQSSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWFPYNGQCPPDFDSEEYFCVKRIFSGGDQSFSHYSNPQNCGPPDDFRFSDPSKQIWTVNEALIQKWLSYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGTRFSGVDMNAARLLFHKLIQPDHPQISQQVAASLEKNLIPKLTSSLPDVEALRFYLTLPECPLMSDSNNFTTIAIPFGTALVNLEKAPLKVLENWWSVLEPPLFLKIVELFKEVVVHLLKLYKIGIPPSERRIFNSFLHTALKVLEILHRVNEKTGQIIQYDKFYIHEVQELIDIRNDYINWVQQQAYGMLADIPVTICTYPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLFLPVIESVNPCLILVVRRENIVGDAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSRLIWFSDKTFEDSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKKKPSLDDLKELVPDVGRSMQQLLDYPEDDVEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLQLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWAEHPTIKMFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLILVIQSTGGGEEYLPVSHTCFNLLDLPKYTDKETLRSKLIQAIDHNEGFSLI", "length": 1049, "header": "tr|A0A481B9G9-1|A0A481B9G9_PIG Isoform 1 of Probable E3 ubiquitin-protein ligase HERC4 OS=Sus scrofa OX=9823 GN=HERC4 PE=4 SV=1 CANONICAL=A0A481B9G9-1" }, "locus": { "chromosome": "14", "start_pos": 71267234, "end_pos": 71126561, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060005.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060005.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043536.3", "url": "https://www.ensembl.org/id/ENSSSCP00000043536.3" } ] } }, { "isoform_ac": "A0A5G2QCE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9/entry#A0A5G2QCE1-1", "sequence": { "sequence": "MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGTEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQSSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWFPYNGQCPPDFDSEEYFCVKRIFSGGDQSFSHYSNPQNCGPPDDFRFSDPSKQIWTVNEALIQKWLSYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGTRFSGVDMNAARLLFHKLIQPDHPQISQQVAASLEKNLIPKLTSSLPDVEALRFYLTLPECPLMSDSNNFTTIAIPFGTALVNLEKAPLKVLENWWSVLEPPLFLKIVELFKEVVVHLLKLYKIGIPPSERRIFNSFLHTALKVLEILHRVNEKTGQIIQYDKFYIHEVQELIDIRNDYINWVQQQAYGMDVNHGLTELADIPVTICTYPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLFLPVIESVNPCLILVVRRENIVGDAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSRLIWFSDKITVENFGATEVKELVLNGADTAVNKQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLQLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWAEHPTIKMFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLILVIQSTGGGEEYLPVSHTCFNLLDLPKYTDKETLRSKLIQAIDHNEGFSLI", "length": 979, "header": "tr|A0A5G2QCE1-1|A0A481B9G9_PIG Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HERC4 OS=Sus scrofa OX=9823 GN=HERC4 PE=4 SV=1 CANONICAL=A0A481B9G9-1" }, "locus": { "chromosome": "14", "start_pos": 71267234, "end_pos": 71126561, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088130.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088130.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062241.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062241.1" } ] } }, { "isoform_ac": "A0A5G2R3Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9/entry#A0A5G2R3Z6-1", "sequence": { "sequence": "MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGTEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQSSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWFPYNGQCPPDFDSEEYFCVKRIFSGGDQSFSHYSNPQNCGPPDDFRFSDPSKQIWTVNEALIQKWLSYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGTRFSGVDMNAARLLFHKLIQPDHPQISQQVAASLEKNLIPKLTSSLPDVEALRFYLTLPECPLMSDSNNFTTIAIPFGTALVNLEKAPLKVLENWWSVLEPPLFLKIVELFKEVVVHLLKLYKIGIPPSERRIFNSFLHTALKVLEILHRVNEKTGQIIQYDKFYIHEVQELIDIRNDYINWVQQQAYGMDVNHGLTELADIPVTICTYPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLFLPVIESVNPCLILVVRRENIVGDAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSRLIWFSDKIPNIFYSQICFKLLDSVVMKTH", "length": 809, "header": "tr|A0A5G2R3Z6-1|A0A481B9G9_PIG Computationally mapped isoform of Probable E3 ubiquitin-protein ligase HERC4 OS=Sus scrofa OX=9823 GN=HERC4 PE=4 SV=1 CANONICAL=A0A481B9G9-1" }, "locus": { "chromosome": "14", "start_pos": 71267234, "end_pos": 71161150, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084627.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084627.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071058.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071058.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCE1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ubiquitin-protein transferase activity", "id": "GO:0004842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004842", "evidence": [ { "database": "UniProtKB", "id": "A0A481B9G9", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A481B9G9", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A481B9G9", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A481B9G9", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A481B9G9", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A481B9G9", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A481B9G9", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "A0A481B9G9", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9" } ], "pmid": "" }, { "name": "negative regulation of smoothened signaling pathway", "id": "GO:0045879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045879", "evidence": [ { "database": "UniProtKB", "id": "A0A481B9G9", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 437, "end_pos": 439, "annotation": "n_glycosylation_sequon" }, { "start_pos": 521, "end_pos": 523, "annotation": "n_glycosylation_sequon" }, { "start_pos": 685, "end_pos": 687, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" }, { "start_pos": 800, "end_pos": 802, "annotation": "n_glycosylation_sequon" }, { "start_pos": 855, "end_pos": 857, "annotation": "n_glycosylation_sequon" }, { "start_pos": 898, "end_pos": 900, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-983140", "name": "Transfer of Ub from E2 to substrate and release of E2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983140", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983140" } ] }, { "id": "R-SSC-983147", "name": "Release of E3 from polyubiquitinated substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983147", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983147" } ] }, { "id": "R-SSC-983156", "name": "Polyubiquitination of substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983156", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983156" } ] }, { "id": "R-SSC-983157", "name": "Interaction of E3 with substrate and E2-Ub complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983157", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983157" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A481B9G9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481B9G9" }, { "id": "PS50237", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50237" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HECT", "eco_id": "ECO_0000259", "start_pos": 722, "end_pos": 1049, "start_aa": "Lys", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], 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"Protein" ] }, { "id": "A0A287AVM4", "url": "https://www.uniprot.org/uniprotkb/A0A287AVM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVM4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480KW66", "url": "https://www.uniprot.org/uniprotkb/A0A480KW66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480KW66-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KW66-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVRVRAVVMARDDSSGGWLPVGGGGLSQVSVCRVRGARPEGGARQGHYVIHGERLRDQKTTLECTLRPGLVYNKVNPIFHHWSLGDCKFGLTFQSPAEADEFQKSLLAALAALGRGSLTPSSSSSSSPSQDTAETPCPLTSHVDSDSSSSHSRQETPPSAAAAPIVTVESASGFGSATPPQRRRSSAQSYPPLLPFTGIPEPPEPLAGVGGPGWGGRGYEDYRRAGPPAPLALSTCVVRFAKTGALRGAALGSPAVLPAPLTEAAAPAPPARPPPGPGPASAPAKASPEAEEAARCVHCRALFRRRADGRGGRCAEAPDPGRLLVRRLSCLWCAESLLYHCLSDAEGDFSDPCACEPGHPRPAARWAALAALSLAVPCLCCYAPLRACHWVAARCGCAGCGGRHEEAAR", "length": 409, "header": "tr|A0A480KW66-1|A0A480KW66_PIG Isoform 1 of Sprouty related EVH1 domain containing 3 OS=Sus scrofa OX=9823 GN=SPRED3 PE=4 SV=1 CANONICAL=A0A480KW66-1" }, "isoforms": [ { "isoform_ac": "A0A287AVM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KW66/entry#A0A287AVM4-1", "sequence": { "sequence": "MAQMGGKGGDPFWILRKWGLGGCSLEPGPGSRTQRASAPASRLPLPQAAPSPPLPGFPSLPPRPGSRCPSLAPPEPARELERRGGGGGGHVATARSPAGAFQTTLECTLRPGLVYNKVNPIFHHWSLGDCKFGLTFQSPAEADEFQKSLLAALAALGRGSLTPSSSSSSSPSQDTAETPCPLTSHVDSDSSSSHSRQETPPSAAAAPIVTVESASGFGSATPPQRRRSSAQSYPPLLPFTGIPEPPEPLAGVGGPGWGGRGYEDYRRAGPPAPLALSTCVVRFAKTGALRGAALGSPAVLPAPLTEAAAPAPPARPPPGPGPASAPAKASPEAEEAARCVHCRALFRRRADGRGGRCAEAPDPGRLLVRRLSCLWCAESLLYHCLSDAEGDFSDPCACEPGHPRPAARWAALAALSLAVPCLCCYAPLRACHWVAARCGCAGCGGRHEEAAR", "length": 452, "header": "tr|A0A287AVM4-1|A0A480KW66_PIG Computationally mapped isoform of Sprouty related EVH1 domain containing 3 OS=Sus scrofa OX=9823 GN=SPRED3 PE=4 SV=2 CANONICAL=A0A480KW66-1" }, "locus": { "chromosome": "6", "start_pos": 47309177, "end_pos": 47302055, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057412.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057412.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047964.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047964.2" } ] } }, { "isoform_ac": "A0A480KW66-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KW66/entry#A0A480KW66-1", "sequence": { "sequence": "MVRVRAVVMARDDSSGGWLPVGGGGLSQVSVCRVRGARPEGGARQGHYVIHGERLRDQKTTLECTLRPGLVYNKVNPIFHHWSLGDCKFGLTFQSPAEADEFQKSLLAALAALGRGSLTPSSSSSSSPSQDTAETPCPLTSHVDSDSSSSHSRQETPPSAAAAPIVTVESASGFGSATPPQRRRSSAQSYPPLLPFTGIPEPPEPLAGVGGPGWGGRGYEDYRRAGPPAPLALSTCVVRFAKTGALRGAALGSPAVLPAPLTEAAAPAPPARPPPGPGPASAPAKASPEAEEAARCVHCRALFRRRADGRGGRCAEAPDPGRLLVRRLSCLWCAESLLYHCLSDAEGDFSDPCACEPGHPRPAARWAALAALSLAVPCLCCYAPLRACHWVAARCGCAGCGGRHEEAAR", "length": 409, "header": "tr|A0A480KW66-1|A0A480KW66_PIG Isoform 1 of Sprouty related EVH1 domain containing 3 OS=Sus scrofa OX=9823 GN=SPRED3 PE=4 SV=1 CANONICAL=A0A480KW66-1" }, "locus": { "chromosome": "6", "start_pos": 47309177, "end_pos": 47303949, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089503.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089503.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070708.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070708.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVM4", "url": "https://www.uniprot.org/uniprotkb/A0A287AVM4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5658442", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "resource": "Reactome", "description": "Regulation of RAS by GAPs" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M9P152-1", "protein_name": "Sprouty-related, EVH1 domain-containing protein 3 isoform X1", "gene_name": "spred3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMMLPVENGCCILEPIRNHMKVDRERQENESSEHKDVRVRAVVMTRDDSSGGWVPLGGGGLSHVIICKGRSSEGRGRREYVIRGERLRDRAPVLECAIQKGLVYNKVNPIFHHWRVEERKFGLTFQSPADAISFERGLQSVLEKLDRGSDSPSSSTPEEGDTEDDGQASHTGSESSSNSRKEMLPKPITIVTSESSSTCFVRPSEEFAYGNRTQTPAQIHTRPSQHQLTQVTAVLNPPSPPPPPPAPPTPPAAPPAASPLSPLSPTISLLEEGDLRSLDPCKDLWGTRGYEDYRRAGATRTKVGGLTGGVVVGGGQDKSELCVVRFEKELAGVGTTGCEVTVMLDTKGSQRNSSPTCMPNAVPGVPSASGSPQETGKSSPSPCCIHTSLATPRSRTRKRGAGGGEAISPDDDSSCPQGSSSCSSRCVYCRSVFSASENGRGRCRDAPDPALHCLRQWTCVWCAESLLYHCMSDSEGEFWEPCSCEDSMGGRPHPLCCARWMALLALSLFVPCMCCYLPLRACLRCGERCGCCGGKHKAVR", "length": 540 }, "evidence": [ { "id": "A0A480KW66", "url": "https://omabrowser.org/oma/group/A0A480KW66/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2MJR0-1", "protein_name": "Sprouty-related, EVH1 domain-containing protein 3", "gene_name": "SPRED3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVRVRAVVMARDDSSGGWLPVGGGGLSQVSVCRVRGARPEGGARQGHYVIHGERLRDQKTTLECTLKPGLVYNKVNPIFHHWSLGDCKFGLTFQSPAEADEFQKSLLAALAALGRGSLTPSSSSSSSSPSQDTAETPCPLTSHVDSDSSSSHSRQETPPSAAAAPIITMESASGFGPTTPPQRRRSSAQSYPPLLPFTGIPEPSEPLAGAGGLGWGGRGYEDYRRSGPPAPLALSTCVVRFAKTGALRGAALGPPAALPAPLTEAAPPAPPARPPPGPGPSSAPAKASPEAEEAARCVHCRALFRRRADGRGGRCAEAPDPGRLLVRRLSCLWCAESLLYHCLSDAEGDFSDPCACEPGHPRPAARWAALAALSLAVPCLCCYAPLRACHWVAARCGCAGCGGRHEEAAR", "length": 410 }, "evidence": [ { "id": "A0A480KW66", "url": "https://omabrowser.org/oma/group/A0A480KW66/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P6N5-1", "protein_name": "Sprouty-related, EVH1 domain-containing protein 3", "gene_name": "Spred3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVRVRAVVMARDDSSGGWLPVGGGGLSQVSVCRVRGARPEGGARQGHYVIHGERLRDQKTTLECTLRPGLVYNKVNPIFHHWSLGDCKFGLTFQSPAEADEFQKSLLAALAALSRGSLTPSSSSSSSSPSQDTAETPCPLTSHVDSDSSSSHSRQETPPTAPIATVESAAAFPLATRPQRRRSSAQSYPPLLPFTGIPEPSESLAGAGSQGWGSRGYEDYRRSGPPPPPLALSTCVVRFAKTGALRGAALGPPVSLPAPLTEAAPPAPPARPPPGPGPTPAPAKASPEAEEAARCVHCRALFRRRADGRGGRCAEAPDPGRLLVRRLSCLWCAESLLYHCLSDAEGDFSDPCACEPGHPRPAARWAALAALSLAVPCLCCYAPLRACHWVAARCGCAGCGGRHEEAAR", "length": 408 }, "evidence": [ { "id": "A0A480KW66", "url": "https://omabrowser.org/oma/group/A0A480KW66/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of intracellular signal transduction", "id": "GO:1902532", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902532", "evidence": [ { "database": "UniProtKB", "id": "A0A480KW66", "url": "https://www.uniprot.org/uniprotkb/A0A480KW66" } ], "pmid": "" }, { "name": "negative regulation of ERK1 and ERK2 cascade", "id": "GO:0070373", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070373", "evidence": [ { "database": "UniProtKB", "id": "A0A480KW66", "url": "https://www.uniprot.org/uniprotkb/A0A480KW66" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A480KW66", "url": "https://www.uniprot.org/uniprotkb/A0A480KW66" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "A0A480KW66", "url": "https://www.uniprot.org/uniprotkb/A0A480KW66" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480KW66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480KW66" }, { "id": "PS51488", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51488" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KBD", "eco_id": "ECO_0000259", "start_pos": 194, "end_pos": 243, "start_aa": "Leu", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A480KW66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480KW66" }, { "id": "PS50229", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50229" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WH1", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 113, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480UT68-1", "uniprot_ac": "A0A480UT68", "uniprot_id": "A0A480UT68_PIG", "mass": { "chemical_mass": 40310.0, "monoisotopic_mass": 40310.0 }, "refseq": { "ac": "XP_020954927", "name": "protein ABHD4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954927" }, "gene_names": [ { "name": "ABHD4", "type": "recommended", "evidence": [ { "id": "A0A480UT68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68" } ] }, { "name": "ABHD4", "type": "synonym", "evidence": [ { "id": "XP_020954927", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954927" } ] } ], "protein_names": [ { "name": "(Lyso)-N-acylphosphatidylethanolamine lipase", "type": "recommended", "evidence": [ { "id": "A0A480UT68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68/entry#names_and_taxonomy" } ] }, { "name": "Alpha/beta hydrolase domain-containing protein 4", "type": "synonym", "evidence": [ { "id": "A0A480UT68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68/entry#names_and_taxonomy" } ] }, { "name": "Alpha/beta-hydrolase 4", "type": "synonym", "evidence": [ { "id": "A0A480UT68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68/entry#names_and_taxonomy" } ] }, { "name": "protein ABHD4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020954927", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954927" } ] } ], "function": [ { "annotation": "Lysophospholipase selective for N-acyl phosphatidylethanolamine (NAPE). Contributes to the biosynthesis of N-acyl ethanolamines, including the endocannabinoid anandamide by hydrolyzing the sn-1 and sn-2 acyl chains from N-acyl phosphatidylethanolamine (NAPE) generating glycerophospho-N-acyl ethanolamine (GP-NAE), an intermediate for N-acyl ethanolamine biosynthesis. Hydrolyzes substrates bearing saturated, monounsaturated, polyunsaturated N-acyl chains. Shows no significant activity towards other lysophospholipids, including lysophosphatidylcholine, lysophosphatidylethanolamine and lysophosphatidylserine.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B2G3", "url": "https://www.uniprot.org/uniprotkb/A0A287B2G3#function" }, { "database": "UniProtKB", "id": "ARBA00054321", "url": "https://www.uniprot.org/uniprotkb/ARBA00054321#function" }, { "database": "UniProtKB", "id": "A0A5G2QEF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEF0#function" }, { "database": "UniProtKB", "id": "A0A8D1AG80", "url": "https://www.uniprot.org/uniprotkb/A0A8D1AG80#function" }, { "database": "UniProtKB", "id": "A0A8W4FCT1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCT1#function" }, { "database": "UniProtKB", "id": "F1S9A3", "url": "https://www.uniprot.org/uniprotkb/F1S9A3#function" }, { "database": "UniProtKB", "id": "A0A287AX52", "url": "https://www.uniprot.org/uniprotkb/A0A287AX52#function" }, { "database": "UniProtKB", "id": "A0A480UT68", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480UT68", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ABHD4", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68", "locus": { "chromosome": "7", "start_pos": 76396484, "end_pos": 76431809, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002051", "url": "https://www.ensembl.org/id/ENSSSCG00000002051" } ] } } ], "crossref": [ { "id": "ENSSSCG00000002051", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002051", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154266", "url": "https://www.ncbi.nlm.nih.gov/gene/100154266", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "AFHSMMQ", "url": "https://omabrowser.org/oma/group/AFHSMMQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480UT68", "url": "https://www.orthodb.org/?gene=A0A480UT68", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR42886", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42886", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42886:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42886:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1482839", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482839", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020954927", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954927", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "45384", "url": "https://www.rhea-db.org/rhea/45384", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "45388", "url": "https://www.rhea-db.org/rhea/45388", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "45392", "url": "https://www.rhea-db.org/rhea/45392", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "45396", "url": "https://www.rhea-db.org/rhea/45396", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "45400", "url": "https://www.rhea-db.org/rhea/45400", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "45420", "url": "https://www.rhea-db.org/rhea/45420", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "45424", "url": "https://www.rhea-db.org/rhea/45424", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "45460", "url": "https://www.rhea-db.org/rhea/45460", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "55236", "url": "https://www.rhea-db.org/rhea/55236", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "55240", "url": "https://www.rhea-db.org/rhea/55240", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AX52", "url": "https://www.uniprot.org/uniprotkb/A0A287AX52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AX52-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX52-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B2G3", "url": "https://www.uniprot.org/uniprotkb/A0A287B2G3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B2G3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B2G3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480UT68", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480UT68-1", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEF0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1AG80", "url": "https://www.uniprot.org/uniprotkb/A0A8D1AG80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1AG80-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1AG80-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCT1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCT1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9A3", "url": "https://www.uniprot.org/uniprotkb/F1S9A3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9A3-1", "url": "https://www.uniprot.org/uniprotkb/F1S9A3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGWFGSTRQGLFTMADDLEQQPQGWLSSWLPTWRPTSMSQLKNVEARILQCLQNKFLARYVSLPNQNKIWTVTVSPELRDRTPLVMVHGFGGGVGLWILNMDSLSARRTLHTFDLLGFGRSSRPTFPRDPEGAEDEFVTSIETWRETMGIPSMILLGHSLGGFLATSYSIKYPDRVKHLILVDPWGFPLRPTDPSEIRAPPTWVKAVASVLGRSNPLAVLRVAGPWGPGLVQRFRPDFKRKFADFFEDDTISEYIYHCNAQNPSGETAFKAMMESFGWARRPMLERIHLIRKDVPITMIYGANTWIDTSTGKKVKLQRPDSYVRDLEIEGASHHVYADQPHIFNAVVEEICDSVD", "length": 355, "header": "tr|A0A480UT68-1|A0A480UT68_PIG Isoform 1 of (Lyso)-N-acylphosphatidylethanolamine lipase OS=Sus scrofa OX=9823 GN=ABHD4 PE=1 SV=1 CANONICAL=A0A480UT68-1" }, "isoforms": [ { "isoform_ac": "A0A287AX52-1", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68/entry#A0A287AX52-1", "sequence": { "sequence": "RAKEKRVQNKFLARYVSLPNQNKIWTVTVSPELRDRTPLVMVHGFGGGVGLWILNMDSLSARRTLHTFDLLGFGRSSRPTFPRDPEGAEDEFVTSIETWRETMGIPSMILLGHSLGGFLATSYSIKYPDRVKHLILVDPWGFPLRPTDPSEIRAPPTWVKAVASVLGRSNPLAVLRVAGPWGPGLVQRFRPDFKRKFADFFEDDTISEYIYHCNAQNPSGETAFKAMMESFGWARRPMLERIHLIRKDVPITMIYGANTWIDTSTGKKVKLQRPDSYVRDLVSWPSEDQV", "length": 290, "header": "tr|A0A287AX52-1|A0A480UT68_PIG Computationally mapped isoform of (Lyso)-N-acylphosphatidylethanolamine lipase OS=Sus scrofa OX=9823 GN=ABHD4 PE=1 SV=2 CANONICAL=A0A480UT68-1" }, "locus": { "chromosome": "7", "start_pos": 76414800, "end_pos": 76406850, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046844.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046844.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048444.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048444.2" } ] } }, { "isoform_ac": "A0A287B2G3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68/entry#A0A287B2G3-1", "sequence": { "sequence": "MGWFGSTRQGLFTMADDLEQQPQGWLSSWLPTWRPTSMSQLKNVEARILQCLQNKFLARYVSLPNQNKIWTVTVSPELRDRTPLVMVHGFGGGVGLWILNMDSLSARRTLHTFDLLGFGRSSRPTFPRDPEGAEDEFVTSIETWRETMGIPSMILLGHSLGGFLATSYSIKYPDRVKHLILVDPWGFPLRPTDPSEIRAPPTWVKAVASVLGRSNPLAVLRVAGPWGPGLVQRFRPDFKRKFADFFEDDTISEYIYHCNAQNPSGETAFKAMMESFGWARRPMLERIHLIRKDVPITMIYGANTWIDTSTGKKVKLQRPDSYVRDLVLEGDRKQIQGGRKWCDSFPVPGVKDHPAPAGSSPRRRSRVPRTMCTQTSLTSSTRWWRRSATRLIELLSLQAEEKASESLSPPCLLTHPSVLSSPTNTCQPGRVLGCPQGRATEEKHS", "length": 445, "header": "tr|A0A287B2G3-1|A0A480UT68_PIG Computationally mapped isoform of (Lyso)-N-acylphosphatidylethanolamine lipase OS=Sus scrofa OX=9823 GN=ABHD4 PE=1 SV=2 CANONICAL=A0A480UT68-1" }, "locus": { "chromosome": "7", "start_pos": 76419639, "end_pos": 76405669, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054768.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054768.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050293.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050293.2" } ] } }, { "isoform_ac": "A0A480UT68-1", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68/entry#A0A480UT68-1", "sequence": { "sequence": "MGWFGSTRQGLFTMADDLEQQPQGWLSSWLPTWRPTSMSQLKNVEARILQCLQNKFLARYVSLPNQNKIWTVTVSPELRDRTPLVMVHGFGGGVGLWILNMDSLSARRTLHTFDLLGFGRSSRPTFPRDPEGAEDEFVTSIETWRETMGIPSMILLGHSLGGFLATSYSIKYPDRVKHLILVDPWGFPLRPTDPSEIRAPPTWVKAVASVLGRSNPLAVLRVAGPWGPGLVQRFRPDFKRKFADFFEDDTISEYIYHCNAQNPSGETAFKAMMESFGWARRPMLERIHLIRKDVPITMIYGANTWIDTSTGKKVKLQRPDSYVRDLEIEGASHHVYADQPHIFNAVVEEICDSVD", "length": 355, "header": "tr|A0A480UT68-1|A0A480UT68_PIG Isoform 1 of (Lyso)-N-acylphosphatidylethanolamine lipase OS=Sus scrofa OX=9823 GN=ABHD4 PE=1 SV=1 CANONICAL=A0A480UT68-1" }, "locus": { "chromosome": "7", "start_pos": 76419639, "end_pos": 76405829, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062949.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062949.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047249.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047249.2" } ] } }, { "isoform_ac": "A0A5G2QEF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68/entry#A0A5G2QEF0-1", "sequence": { "sequence": "AICTQSYHSALDPLSPGLQNKFLARYVSLPNQNKIWTVTVSPELRDRTPLVMVHGFGGGVGLWILNMDSLSARRTLHTFDLLGFGRSSRPTFPRDPEGAEDEFVTSIETWRETMGIPSMILLGHSLGGFLATSYSIKYPDRVKHLILVDPWGFPLRPTDPSEIRAPPTWVKAVASVLGRSNPLAVLRVAGPWGPGLVQRFRPDFKRKFADFFEDDTISEYIYHCNAQNPSGETAFKAMMESFGWARRPMLERIHLIRKDVPITMIYGANTWIDTSTGKKVKLQRPDSYVRDLVLEGDRKQIQGGRKWCDSFPVPGVKDHPAPAGSSPRRRSRVPRTMCTQTSLTSSTRWWRRSATRLIELLSLQAEEKASESLSPPCLLTHPSVLSSPTNTCQPGRVLGCPQGRATEEKHS", "length": 411, "header": "tr|A0A5G2QEF0-1|A0A480UT68_PIG Computationally mapped isoform of (Lyso)-N-acylphosphatidylethanolamine lipase OS=Sus scrofa OX=9823 GN=ABHD4 PE=1 SV=2 CANONICAL=A0A480UT68-1" }, "locus": { "chromosome": "7", "start_pos": 76414863, "end_pos": 76405669, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088477.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088477.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062047.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062047.2" } ] } }, { "isoform_ac": "A0A8D1AG80-1", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68/entry#A0A8D1AG80-1", "sequence": { "sequence": "MSQLKNVEARILQCLQNKFLARYVSLPNQNKIWTVTVSPELRDRTPLVMVHGFGGGVGLWILNMDSLSARRTLHTFDLLGFGRSSRPTFPRDPEGAEDEFVTSIETWRETMGIPSMILLGHSLGGFLATSYSIKYPDRVKHLILVDPWGFPLRPTDPSEIRAPPTWVKAVASVLGRSNPLAVLRVAGPWGPGLVQRFRPDFKRKFADFFEDDTISEYIYHCNAQNPSGETAFKAMMESFGWARRPMLERIHLIRKDVPITMIYGANTWIDTSTGKKVKLQRPDSYVRDLG", "length": 290, "header": "tr|A0A8D1AG80-1|A0A480UT68_PIG Computationally mapped isoform of (Lyso)-N-acylphosphatidylethanolamine lipase OS=Sus scrofa OX=9823 GN=ABHD4 PE=1 SV=1 CANONICAL=A0A480UT68-1" }, "locus": { "chromosome": "7", "start_pos": 76416316, "end_pos": 76403242, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062365.2", "url": "https://www.ensembl.org/id/ENSSSCT00000062365.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042561.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042561.2" } ] } }, { "isoform_ac": "A0A8W4FCT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68/entry#A0A8W4FCT1-1", "sequence": { "sequence": "MGWFGSTRQGLFTMADDLEQQPQGWLSSWLPTWRPTSMSQLKNVEARILQCLQNKFLARYVSLPNQNKIWTVTVSPELRDRTPLVMVHGFGGGVGLWILNMDSLSARRTLHTFDLLGFGRSSRPTFPRDPEGAEDEFVTSIETWRETMGIPSMILLGHSLGGFLATSYSIKYPDRVKHLILVDPWGFPLRPTDPSEIRAPPTWVKAVASVLGRSNPLAVLRVAGPWGPGLVQRFRPDFKRKFADFFEDDTISEYIYHCNAQNPSGETAFKAMMESFGWARRPMLERIHLIRKDVPITMIYGANTWIDTSTGKKVKLQRPDSYVRDLVSWPSEDQV", "length": 335, "header": "tr|A0A8W4FCT1-1|A0A480UT68_PIG Computationally mapped isoform of (Lyso)-N-acylphosphatidylethanolamine lipase OS=Sus scrofa OX=9823 GN=ABHD4 PE=1 SV=1 CANONICAL=A0A480UT68-1" }, "locus": { "chromosome": "7", "start_pos": 76419639, "end_pos": 76406850, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095777.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095777.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076114.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076114.1" } ] } }, { "isoform_ac": "F1S9A3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68/entry#F1S9A3-1", "sequence": { "sequence": "MIWSSSLQNKFLARYVSLPNQNKIWTVTVSPELRDRTPLVMVHGFGGGVGLWILNMDSLSARRTLHTFDLLGFGRSSRPTFPRDPEGAEDEFVTSIETWRETMGIPSMILLGHSLGGFLATSYSIKYPDRVKHLILVDPWGFPLRPTDPSEIRAPPTWVKAVASVLGRSNPLAVLRVAGPWGPGLVQRFRPDFKRKFADFFEDDTISEYIYHCNAQNPSGETAFKAMMESFGWARRPMLERIHLIRKDVPITMIYGANTWIDTSTGKKVKLQRPDSYVRDLVLEGDRKQIQGGRKWCDSFPVPGVKDHPAPAGSSPRRRSRVPRTMCTQTSLTSSTRWWRRSATRLIELLSLQAEEKASESLSPPCLLTHPSVLSSPTNTCQPGRVLGCPQGRATEEKHS", "length": 400, "header": "tr|F1S9A3-1|A0A480UT68_PIG Computationally mapped isoform of (Lyso)-N-acylphosphatidylethanolamine lipase OS=Sus scrofa OX=9823 GN=ABHD4 PE=1 SV=3 CANONICAL=A0A480UT68-1" }, "locus": { "chromosome": "7", "start_pos": 76419593, "end_pos": 76405669, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002294.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002294.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002241.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002241.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEF0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEF0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1482839", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482839", "resource": "Reactome", "description": "Acyl chain remodelling of PE" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZAW4-1", "protein_name": "(Lyso)-N-acylphosphatidylethanolamine lipase", "gene_name": "Abhd4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGWLSSTRQGLFTMADDLEQQPQGWLSSWLPTWRPTSMSQLKNVEARILQCLQNKFLARYVSLPNQNKIWTVTVSPEQKDRTPLVMVHGFGGGVGLWILNMDSLSARRTLHTFDLLGFGRSSRPTFPRDPEGAEDEFVTSIETWRETMGIPTMILLGHSLGGFLATSYSIKYPERVKHLILVDPWGFPLRPTDPSEIRTPPTWVKAVASVLGRSNPLAVLRVAGPWGPGLVQRFRPDFKRKFADFFEDDTISEYIYHCNAQNPSGETAFKAMMESFGWARRPMLERIHLIRKDVPITMIYGANTWIDTSTGKKVKLQRPDSYVRDMEIEGASHHVYADQPHIFNAVVEEICNSVD", "length": 355 }, "evidence": [ { "id": "A0A480UT68", "url": "https://omabrowser.org/oma/group/A0A480UT68/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O22975-1", "protein_name": "1-acylglycerol-3-phosphate O-acyltransferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNLSRFASRLRMAEEISKTKVGSSSTASVADSSAAASAATNAAKSRWKILWPNSLRWIPTSTDYIIAAEKRLLSILKTPYVQEQVSIGSGPPGSKIRWFRSTSNESRYINTVTFDAKEGAPTLVMVHGYGASQGFFFRNFDALASRFRVIAIDQLGWGGSSRPDFTCRSTEETEAWFIDSFEEWRKAQNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGSAGFSAEADAKSEWLTKFRATWKGAVLNHLWESNFTPQKLVRGLGPWGPGLVNRYTTARFGAHSEGTGLTEEEAKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLQSASEWKVPTTFIYGMNDWMNYQGAVEARKSMKVPCEIIRVPQGGHFVFIDNPIGFHSAVLYACRKFISQDSSHDQQLLDGLRLV", "length": 418 }, "evidence": [ { "id": "A0A480UT68", "url": "https://omabrowser.org/oma/group/A0A480UT68/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P53264-1", "protein_name": "Cardiolipin-specific deacylase 1, mitochondrial", "gene_name": "CLD1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MFKSTLNSIIRRPLKGFQLLRGADSSNTRPQSPRASARDVTEKQILRTPSAPTAIPLREIIYRVPSLFPRPLEDSVKDFRDFIKNEDAFQTELLKTLPFYPTPSESKTARLIRTVVDDEGNYINEFCIRPRKTSVPEADLKHLVFIHGYGAGLGFFIKNFEDIPLLDNEWCIHAIDLPGYGFSSRPKFPFEYPRDNIHSVQDWFHERIHTWFSKRNLLNRPEKNIVMAHSLGSYLMALYLQKYKESPSFKKLILCSPAGVSYRDFNNTASEVEKWKPPPWWYVKLWDRNISPFTLVRNFRQLGSKITSGWSYRRFKHILNGDPEQSKRFEALHRYAYAIFNKRGSGEYLLSFALKCGGEPRLSLEQQLFDGKKSDILKNSNCDWLWLYGDDDWMDVNGGLRVSRFLKEKLKQKSNVIIVPHSGHHLYLDNYKFFNNILTKEMQKI", "length": 445 }, "evidence": [ { "id": "A0A480UT68", "url": "https://omabrowser.org/oma/group/A0A480UT68/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q5EA59-1", "protein_name": "(Lyso)-N-acylphosphatidylethanolamine lipase", "gene_name": "ABHD4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MADDLEQQPQGWLSSWLPTWRPTSMSQLKNVEARILQCLQNKFLARYVSLPNQNKIWTVTVSPELRDRTPLVMVHGFGGGVGLWILNMDSLSTRRTLHTFDLLGFGRSSRPTFPRDPEGAEDEFVTSIETWRESMGIPSMILLGHSLGGFLATSYSIKYPDRVKHLILVDPWGFPLRPADPSQVRAPPTWVKAVASVLGRSNPLAVLRVAGPWGPGLVQRFRPDFKRKFADFFDDDTISEYIYHCNAQNPSGETAFKAMMESFGWARRPMLERIHLIRKDVPITMIYGANTWIDTSTGKKVKLQRPDSYVRDLEIEGASHHVYADQPHIFNAVVEEICDSVD", "length": 342 }, "evidence": [ { "id": "A0A480UT68", "url": "https://omabrowser.org/oma/group/A0A480UT68/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8VD66-1", "protein_name": "(Lyso)-N-acylphosphatidylethanolamine lipase", "gene_name": "Abhd4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADDLEQQPQGWLSSWLPTWRPTSMSQLKNVEARILQCLQNKFLARYVSLPNQNKIWTVTVSPEQKDRTPLVMVHGFGGGVGLWILNMDSLSARRTLHTFDLLGFGRSSRPTFPRDPEGAEDEFVASIETWRETMGIPTMILLGHSLGGFLATSYSIKYPERVKHLILVDPWGFPLRPTDPSEIRAPPTWVKAVASVLGRSNPLAVLRVAGPWGPGLVQRFRPDFKRKFADFFEDDTISEYIYHCNAQNPSGETAFKAMMESFGWARRPMLERIHLIRKDVPITMIYGANTWIDTSTGKKVKMQRPDSYVRDMEIEGASHHVYADQPHIFNAVVEEICNSVD", "length": 342 }, "evidence": [ { "id": "A0A480UT68", "url": "https://omabrowser.org/oma/group/A0A480UT68/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "glycerophospholipid metabolic process", "id": "GO:0006650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006650", "evidence": [ { "database": "UniProtKB", "id": "A0A480UT68", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68" } ], "pmid": "" }, { "name": "lipid catabolic process", "id": "GO:0016042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016042", "evidence": [ { "database": "UniProtKB", "id": "A0A480UT68", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68" } ], "pmid": "" }, { "name": "phosphatidic acid biosynthetic process", "id": "GO:0006654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006654", "evidence": [ { "database": "UniProtKB", "id": "A0A480UT68", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68" } ], "pmid": "" }, { "name": "lipid homeostasis", "id": "GO:0055088", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055088", "evidence": [ { "database": "UniProtKB", "id": "A0A480UT68", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A480UT68", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68" } ], "pmid": "" }, { "name": "lysophosphatidic acid acyltransferase activity", "id": "GO:0042171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042171", "evidence": [ { "database": "UniProtKB", "id": "A0A480UT68", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68" } ], "pmid": "" }, { "name": "phosphatidylcholine lysophospholipase activity", "id": "GO:0004622", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004622", "evidence": [ { "database": "UniProtKB", "id": "A0A480UT68", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "lipid droplet", "id": "GO:0005811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005811", "evidence": [ { "database": "UniProtKB", "id": "A0A480UT68", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "45384", "name": "", "equation": "N-hexadecanoyl-1-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = N-hexadecanoyl-sn-glycero-3-phosphoethanolamine + (9Z)-octadecenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "45384", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/45384" } ] }, { "id": "45388", "name": "", "equation": "N-octadecanoyl-1-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = N-octadecanoyl-sn-glycero-3-phospho-ethanolamine + (9Z)-octadecenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "45388", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/45388" } ] }, { "id": "45392", "name": "", "equation": "N-eicosanoyl-1-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = N-eicosanoyl-sn-glycero-3-phosphoethanolamine + (9Z)-octadecenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "45392", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/45392" } ] }, { "id": "45396", "name": "", "equation": "N,1-di-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = N-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + (9Z)-octadecenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "45396", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/45396" } ] }, { "id": "45400", "name": "", "equation": "N-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-1-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = N-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphoethanolamine + (9Z)-octadecenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "45400", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/45400" } ] }, { "id": "45420", "name": "", "equation": "N,1-diacyl-sn-glycero-3-phosphoethanolamine + H2O = N-acyl-sn-glycero-3-phosphoethanolamine + a fatty acid + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "45420", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/45420" } ] }, { "id": "45424", "name": "", "equation": "N-hexadecanoyl-1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = N-hexadecanoyl-1-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + (9Z)-octadecenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "45424", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/45424" } ] }, { "id": "45460", "name": "", "equation": "an N-acyl-1,2-diacyl-sn-glycero-3-phosphoethanolamine + H2O = N,1-diacyl-sn-glycero-3-phosphoethanolamine + a fatty acid + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "45460", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/45460" } ] }, { "id": "55236", "name": "", "equation": "1-octadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phospho-(N-hexadecanoyl)-serine + H2O = 1-octadecanoyl-2-hydroxy-sn-glycero-3-phospho-(N-hexadecanoyl)-serine + (9Z)-octadecenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "55236", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/55236" } ] }, { "id": "55240", "name": "", "equation": "1-O-(1Z-octadecenoyl)-2-(9Z-octadecenoyl)-sn-glycero-3-phospho-N-hexadecanoyl-ethanolamine + H2O = 1-O-(1Z-octadecenyl)-sn-glycero-3-phospho-N-hexadecanoyl-ethanolamine + (9Z)-octadecenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "55240", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/55240" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480UT68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480UT68" }, { "id": "PF00561", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AB hydrolase-1", "eco_id": "ECO_0000259", "start_pos": 83, "end_pos": 338, "start_aa": "Pro", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { 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"A0A8D0SKV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0SKV3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRKSSSPSLSNCNSVLANKIFGIPLDELQQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETVEWLRQRYDSGEEVDLVKEADIPSAISLLRFFLQELPEPVIPGSLHIHLIQLSQDYNNEDEFGRKLRFLLQQLPPVNYSLLKFLCRFLANVASHHEEIWSANSLAAVFGPDVFHIYTDVEDLKEQEIVSRIMAGLLENYYEFFENEEEDFSSNDLSSITEQAGSSVLHKLESGEQAFHEALEKGITAVKERRDVNELSEEEEDEKLEHIEELPEEGAEKSDDMPEVVQLRMTEDILEPNSVTASTSAPISPINILPASEDILERTIRAAVEQHLFDLQSSIDHDLKNLQQQSLVCNNEAGSVNCDGEGSNNQIGIADDIINASESDRDCSEPVTSTNLDNEVMQQDFVFEDEENNQSVGVLLEPCSDHGDSEDGCLERKEYFPFDSDKLSHLILDSNSKICDLNANTESEVPGGQSVGVQGEASYVQIPHLDLKNVSDGDKWEEPFPAFKSWQEDSESGEAQLSPQAGRMNHHPLEEDCPPVLSHRSLDFGQSQRFLHDPEMLDSSSKALSFARIRRSSFSSKDDKREDRTPYQLVKKLQKKIRQFEEQFERERNSKPSYSDIAANPKVLKWMTELTKLRKQIKDAKHKSSDGEFVPQTRPRSNTLPKSFGSSLDHEDEENEDEARVIQKEKKPSKEATLELILKRLKEKRVERCLPEDIKKMTKDHLVEEKTSLQKSLLYYESQHGRPVTREERHIVKPLYDRYRLVKQMLTRASITPVLGSPSTKRRGQMLQPIIEGETAHFFEEIKEEEEDGVSLSSELTDILKTAVQAQSSLENPESDVEENQEKLALDLRLSSTRAASMPELLEQLWKARAEKKKLRKTLREFEEAFYQQNGRNAQKEDRVPVLEEYREYKKIKAKLRLLEVLISKQDSSKSI", "length": 947, "header": "tr|A0A287BT14-1|A0A287BT14_PIG Isoform 1 of Protein FAM13B OS=Sus scrofa OX=9823 GN=FAM13B PE=3 SV=3 CANONICAL=A0A287BT14-1" }, "isoforms": [ { "isoform_ac": "A0A287AXP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT14/entry#A0A287AXP3-1", "sequence": { "sequence": "MRKSSSPSLSNCNSVLANKIFGIPLDELQQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETVEWLRQRYDSGEEVDLVKEADIPSAISLLRFFLQELPEPVIPGSLHIHLIQLSQDYNNEDEFGRKLRFLLQQLPPVNYSLLKFLCRFLANVASHHEEIWSANSLAAVFGPDVFHIYTDVEDLKEQEIVSRIMAGLLENYYEFFENEEEDFSSNDLSSITEQVNELSEEEEDEKLEHIEELPEEGAEKSDDMPEVVQLRMTEDILEPNSVTASTSAPISPINILPASEDILERTIRAAVEQHLFDLQSSIDHDLKNLQQQSLVCNNEAGSVNCDGEGSNNQIGIADDIINASESDRDCSEPVTSTNLDNEVMQQDFVFEDEENNQSVGVLLEPCSDHGDSEDGCLERKEYFPFDSDKLSHLILDSNSKICDLNANTESEVPGGQSVGVQGEASYVQIPHLDLKNVSDGDKWEASCPITFPLIDFKTMHLQRDGEEPFPAFKSWQEDSESGEAQLSPQAGRMNHHPLEEDCPPVLSHRSLDFGQSQRFLHDPEMLDSSSKALSFARIRRSSFSSKDDKREDRTPYQLVKKLQKKIRQFEEQFERERNSKPSYSDIAANPKVLKWMTELTKLRKQIKDAKHKSSDGEFVPQTRPRSNTLPKSFGSSLDHEDEENEDEARVIQKEKKPSKEATLELILKRLKEKRVERCLPEDIKKMTKDHLVEEKTSLQKSLLYYESQHGRPVTREERHIVKPLYDRYRLVKQMLTRASITPVLGSPSTKRRGQMLQPIIEGETAHFFEEIKEEEEDGVSLSSELTDILKTAVQAQSSLENPESDVEENQEKLALDLRLSSTRAASMPELLEQLWKARAEKKKLRKTLREFEEAFYQQNGRNAQKEDRVPVLEEYREYKKIKAKLRLLEVLISKQDSSKSI", "length": 937, "header": "tr|A0A287AXP3-1|A0A287BT14_PIG Computationally mapped isoform of Protein FAM13B OS=Sus scrofa OX=9823 GN=FAM13B PE=3 SV=2 CANONICAL=A0A287BT14-1" }, "locus": { "chromosome": "2", "start_pos": 140039104, "end_pos": 139960734, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046424.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046424.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048664.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048664.2" } ] } }, { "isoform_ac": "A0A287B1C4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT14/entry#A0A287B1C4-1", "sequence": { "sequence": "MRKSSSPSLSNCNSVLANKIFGIPLDELQQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETVEWLRQRYDSGEEVDLVKEADIPSAISLLRFFLQELPEPVIPGSLHIHLIQLSQDYNNEDEFGRKLRFLLQQLPPVNYSLLKFLCRFLANVASHHEEIWSANSLAAVFGPDVFHIYTDVEDLKEQEIVSRIMAGLLENYYEFFENEEEDFSSNDLSSITEQVNELSEEEEDEKLEHIEELPEEGAEKSDDMPEVVQLRMTEDILEPNSVTASTSAPISPINILPASEDILERTIRAAVEQHLFDLQSSIDHDLKNLQQQSLVCNNEAGSVNCDGEGSNNQIGIADDIINASESDRDCSEPVTSTNLDNEVMQQDFVFEDEENNQSVGVLLEPCSDHGDSEDGCLERKEYFPFDSDKLSHLILDSNSKICDLNANTESEVPGGQSVGVQGEASYVQIPHLDLKNVSDGDKWEEPFPAFKSWQEDSESGEAQLSPQAGRMNHHPLEEDCPPVLSHRSLDFGQSQRFLHDPEMLDSSSKALSFARIRRSSFSSKDDKREDRTPYQLVKKLQKKIRQFEEQFERERNSKPSYSDIAANPKVLKWMTELTKLRKQIKDAKHKSSDGEFVPQTRPRSNTLPKSFGSSLDHEDEENEDEARVIQKEKKPSKEATLELILKRLKEKRVERCLPEDIKKMTKDHLVEEKTSLQKSLLYYESQHGRPGSPSTKRRGQMLQPIIEGETAHFFEEIKEEEEDGVSLSSELTDILKTAVQAQSSLENPESDVEENQEKLALDLRLSSTRAASMPELLEQLWKARAEKKKLRKTLREFEEAFYQQNGRNAQKEDRVPVLEEYREYKKIKAKLRLLEVLISKQDSSKSI", "length": 883, "header": "tr|A0A287B1C4-1|A0A287BT14_PIG Computationally mapped isoform of Protein FAM13B OS=Sus scrofa OX=9823 GN=FAM13B PE=3 SV=1 CANONICAL=A0A287BT14-1" }, "locus": { "chromosome": "2", "start_pos": 140039104, "end_pos": 139960734, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043309.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043309.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050027.1", "url": "https://www.ensembl.org/id/ENSSSCP00000050027.1" } ] } }, { "isoform_ac": "A0A287BNP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT14/entry#A0A287BNP1-1", "sequence": { "sequence": "MRKSSSPSLSNCNSVLANKIFGIPLDELQQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETVEWLRQRYDSGEEVDLVKEADIPSAISLLRFFLQELPEPVIPGSLHIHLIQLSQDYNNEDEFGRKLRFLLQQLPPVNYSLLKFLCRFLANVASHHEEIWSANSLAAVFGPDVFHIYTDVEDLKEQEIVSRIMAGLLENYYEFFENEEEDFSSNDLSSITEQAGSSVLHKLESGEQAFHEALEKGITAVKERRDVNELSEEEEDEKLEHIEELPEEGAEKSDDMPEVVQLRMTEDILEPNSVTASTRIGIADDIINASESDRDCSEPVTSTNLDNEVMQQDFVFEDEENNQSVGVLLEPCSDHGDSEDGCLERKEYFPFDSDKLSHLILDSNSKICDLNANTESEVPGGQSVGVQGEASYVQIPHLDLKNVSDGDKWEEPFPAFKSWQEDSESGEAQLSPQAGRMNHHPLEEDCPPVLSHRSLDFGQSQRFLHDPEMLDSSSKALSFARIRRSSFSSKDDKREDRTPYQLVKKLQKKIRQFEEQFERERNSKPSYSDIAANPKVLKWMTELTKLRKQIKDAKHKSSDGEFVPQTRPRSNTLPKSFGSSLDHEDEENEDEARVIQKEKKPSKEATLELILKRLKEKRVERCLPEDIKKMTKDHLVEEKTSLQKSLLYYESQHGRPVTREERHIVKPLYDRYRLVKQMLTRASITPVLGSPSTKRRGQMLQPIIEGETAHFFEEIKEEEEDGVSLSSELTDILKTAVQAQSSLENPESDVEENQEKLALDLRLSSTRAASMPELLEQLWKARAEKKKLRKTLREFEEAFYQQNGRNAQKEDRVPVLEEYREYKKIKAKLRLLEVLISKQDSSKSI", "length": 881, "header": "tr|A0A287BNP1-1|A0A287BT14_PIG Computationally mapped isoform of Protein FAM13B OS=Sus scrofa OX=9823 GN=FAM13B PE=3 SV=3 CANONICAL=A0A287BT14-1" }, "locus": { "chromosome": "2", "start_pos": 140039104, "end_pos": 139960734, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046408.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046408.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058047.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058047.3" } ] } }, { "isoform_ac": "A0A287BT14-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT14/entry#A0A287BT14-1", "sequence": { "sequence": "MRKSSSPSLSNCNSVLANKIFGIPLDELQQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETVEWLRQRYDSGEEVDLVKEADIPSAISLLRFFLQELPEPVIPGSLHIHLIQLSQDYNNEDEFGRKLRFLLQQLPPVNYSLLKFLCRFLANVASHHEEIWSANSLAAVFGPDVFHIYTDVEDLKEQEIVSRIMAGLLENYYEFFENEEEDFSSNDLSSITEQAGSSVLHKLESGEQAFHEALEKGITAVKERRDVNELSEEEEDEKLEHIEELPEEGAEKSDDMPEVVQLRMTEDILEPNSVTASTSAPISPINILPASEDILERTIRAAVEQHLFDLQSSIDHDLKNLQQQSLVCNNEAGSVNCDGEGSNNQIGIADDIINASESDRDCSEPVTSTNLDNEVMQQDFVFEDEENNQSVGVLLEPCSDHGDSEDGCLERKEYFPFDSDKLSHLILDSNSKICDLNANTESEVPGGQSVGVQGEASYVQIPHLDLKNVSDGDKWEEPFPAFKSWQEDSESGEAQLSPQAGRMNHHPLEEDCPPVLSHRSLDFGQSQRFLHDPEMLDSSSKALSFARIRRSSFSSKDDKREDRTPYQLVKKLQKKIRQFEEQFERERNSKPSYSDIAANPKVLKWMTELTKLRKQIKDAKHKSSDGEFVPQTRPRSNTLPKSFGSSLDHEDEENEDEARVIQKEKKPSKEATLELILKRLKEKRVERCLPEDIKKMTKDHLVEEKTSLQKSLLYYESQHGRPVTREERHIVKPLYDRYRLVKQMLTRASITPVLGSPSTKRRGQMLQPIIEGETAHFFEEIKEEEEDGVSLSSELTDILKTAVQAQSSLENPESDVEENQEKLALDLRLSSTRAASMPELLEQLWKARAEKKKLRKTLREFEEAFYQQNGRNAQKEDRVPVLEEYREYKKIKAKLRLLEVLISKQDSSKSI", "length": 947, "header": "tr|A0A287BT14-1|A0A287BT14_PIG Isoform 1 of Protein FAM13B OS=Sus scrofa OX=9823 GN=FAM13B PE=3 SV=3 CANONICAL=A0A287BT14-1" }, "locus": { "chromosome": "2", "start_pos": 140039104, "end_pos": 139960734, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041691.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041691.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059342.3", "url": "https://www.ensembl.org/id/ENSSSCP00000059342.3" } ] } }, { "isoform_ac": "A0A4X1V7E1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT14/entry#A0A4X1V7E1-1", "sequence": { "sequence": "MRKSSSPSLSNCNSVLANKIFGIPLDELQQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETVEWLRQRYDSGEEVDLVKEADIPSAISLLRFFLQELPEPVIPGSLHIHLIQLSQDYNNEDEFGRKLRFLLQQLPPVNYSLLKFLCRFLANVASHHEEIWSANSLAAVFGPDVFHIYTDVEDLKEQEIVSRIMAGLLENYYEFFENEEEDFSSNDLSSITEQVNELSEEEEDEKLEHIEELPEEGAEKSDDMPEVVQLRMTEDILEPNSVTASTSILERTIRAAVEQHLFDLQSSIDHDLKNLQQQSLVCNNEAGSVNCDGEGSNNQIGIADDIINASESDRDCSEPVTSTNLDNEVMQQDFVFEDEENNQSVGVLLEPCSDHGDSEDGCLERKEYFPFDSDKLSHLILDSNSKICDLNANTESEVPGGQSVGVQGEASYVQIPHLDLKNVSDGDKWEASCPITFPLIDFKTMHLQRDGEEPFPAFKSWQEDSESGEAQLSPQAGRMNHHPLEEDCPPVLSHRSLDFGQSQRFLHDPEMLDSSSKALSFARIRRSSFSSKDDKREDRTPYQLVKKLQKKIRQFEEQFERERNSKPSYSDIAANPKVLKWMTELTKLRKQIKDAKHKSSDGEFVPQTRPRSNTLPKSFGSSLDHEDEENEDEARVIQKEKKPSKEATLELILKRLKEKRVERCLPEDIKKMTKDHLVEEKTSLQKSLLYYESQHGRPVTREERHIVKPLYDRYRLVKQMLTRASITPVLGSPSTKRRGQMLQPIIEGETAHFFEEIKEEEEDGVSLSSELTDILKTAVQAQSSLENPESDVEENQEKLALDLRLSSTRAASMPELLEQLWKARAEKKKLRKTLREFEEAFYQQNGRNAQKEDRVPVLEEYREYKKIKAKLRLLEVLISKQDSSKSI", "length": 923, "header": "tr|A0A4X1V7E1-1|A0A287BT14_PIG Computationally mapped isoform of Protein FAM13B OS=Sus scrofa OX=9823 GN=FAM13B PE=3 SV=1 CANONICAL=A0A287BT14-1" }, "locus": { "chromosome": "2", "start_pos": 140039104, "end_pos": 139960734, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047010.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047010.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031835.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031835.2" } ] } }, { "isoform_ac": "A0A8D0SKV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT14/entry#A0A8D0SKV3-1", "sequence": { "sequence": "MRKSSSPSLSNCNSVLANKIFGIPLDELQQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETVEWLRQRYDSGEEVDLVKEADIPSAISLLRFFLQELPEPVIPGSLHIHLIQLSQDYNNEDEFGRKLRFLLQQLPPVNYSLLKFLCRFLANVASHHEEIWSANSLAAVFGPDVFHIYTDVEDLKEQEIVSRIMAGLLENYYEFFENEEEDFSSNDLSSITEQAGSSVLHKLESGEQAFHEALEKGITAVKERRDVNELSEEEEDEKLEHIEELPEEGAEKSDDMPEVVQLRMTEDILEPNSVTASTSILERTIRAAVEQHLFDLQSSIDHDLKNLQQQSLVCNNEAGSVNCDGEGSNNQIGIADDIINASESDRDCSEPVTSTNLDNEVMQQDFVFEDEENNQSVGVLLEPCSDHGDSEDGCLERKEYFPFDSDKLSHLILDSNSKICDLNANTESEVPGGQSVGVQGEASYVQIPHLDLKNVSDGDKWEEPFPAFKSWQEDSESGEAQLSPQAGRMNHHPLEEDCPPVLSHRSLDFGQSQRFLHDPEMLDSSSKALSFARIRRSSFSSKDDKREDRTPYQLVKKLQKKIRQFEEQFERERNSKPSYSDIAANPKVLKWMTELTKLRKQIKDAKHKSSDGEFVPQTRPRSNTLPKSFGSSLDHEDEENEDEARVIQKEKKPSKEATLELILKRLKEKRVERCLPEDIKKMTKDHLVEEKTSLQKSLLYYESQHGRPVTREERHIVKPLYDRYRLVKQMLTRASITPVLGSPSTKRRGQMLQPIIEGETAHFFEEIKEEEEDGVSLSSELTDILKTAVQAQSSLENPESDVEENQEKLALDLRLSSTRAASMPELLEQLWKARAEKKKLRKTLREFEEAFYQQNGRNAQKEDRVPVLEEYREYKKIKAKLRLLEVLISKQDSSKSI", "length": 933, "header": "tr|A0A8D0SKV3-1|A0A287BT14_PIG Computationally mapped isoform of Protein FAM13B OS=Sus scrofa OX=9823 GN=FAM13B PE=3 SV=1 CANONICAL=A0A287BT14-1" }, "locus": { "chromosome": "2", "start_pos": 140039104, "end_pos": 139960734, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029775.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029775.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026304.3", "url": "https://www.ensembl.org/id/ENSSSCP00000026304.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V7E1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V7E1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LQL0-1", "protein_name": "Protein FAM13B", "gene_name": "FAM13B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRKSSSPSLSNCNSVLANKIFGIPLDELQQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETVEWLRQRYDSGEEVDLVKEADVPSAISLLRFFLQELPEPVIPGSLHIHLMQLSQDYNNEDEFGRKLRFLLQQLPPVNYSLLKFLCRFLANVASHHEEIWSANSLAAVFGPDVFHIYTDVEDLKEQEIVSRIMAGLLENYYEFFENEEEDFSSNDLSSITEQAGSSVLHKLESGEQAFHEVLEKGITAVKEGRDVNELSEEEEEDEKLEHIEELPEEGAGKSDDMPEVVQLRMTENILEPNSVTASTSAHTSPISMLPASADILERTIRAAVEQHLFDLQSSIDHDLKNLQQQSLVCNNEAGSVNCDGEGSNNQVDIADGIINASEHNRDCSEPVASTNLDNEVMQQDFVFEDEENNQCVGILLEPCSDHGDGEDDCLERKEYLSFDSDKLSHLILDSSSKICDLNANTESEVPGSQSVGVQGEAACVQIPHLDLKNVSDGDKWEASCPITFPLIDFKTMHLQRDGEEPFPAFKSWQEDSESGEAQLSPQAGRMNHHPLEEDCPPVLSHRSLDFGQSQRFLHDPEMLDSSSKALSFARIRRSSFSSKDEKREDRTPYQLVKKLQKKIRQFEEQFERERNGKPSYSDIAANPKVLKWMTELTKLRKQIKDAKHKTSDGEFVPQTRPRSNTLPKSFGSSLDHEDEENEDDSKVIHKEKKPSKEATLELILKRLKEKRVERCLPEDIKKMTKDHLVEEKTSLQKSLLYYESQHGRPVTREERHIVKPLYDRYRLVKQMLTRASITPVLGSPSTKRRGQMLQPIIEGETAHFFEEIKEEEEDGVCLSSELNDILKTAVQAQSSLENSESDVEENQEKLALDLRLSSTRAASMPELLEQLWKARAEKKKLRKTLRDFEEAFYQQNGRNAQKEDRVPVLEEYREYKKIKAKLRLLEVLISKQDSSKSI", "length": 970 }, "evidence": [ { "id": "A0A287BT14", "url": "https://omabrowser.org/oma/group/A0A287BT14/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8I5ZRM9-1", "protein_name": "Protein FAM13B", "gene_name": "Fam13b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRKSSSPSLSNCNSDLASKIFGIPLDELQQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETVEWLRQRYDSGEEVDLVKEADVPSAISLLRFFLQELPEPVIPGSLHIHLLQLSQDYNNEDEFGRKLRFLLQQLPPVNYSLLKFLCRFLANVASHHEEIWSANSLAAVFGPDVFHIYTDVEDMKEQEIVSRIMAGLLENYYEFFENEEEDFSSNDLSSITEQVNELSEEEEEDEKLDHVEELPEEGVEKSAGVPEVLQSRMAENTQESDSVIATARVAAAAAAATTNASDGNTKCSKPVAGTTADNEVMQQDFVFEDQKNNESVGILLEPCSDHGDSEDGCPERKEYLLCDTDKLPHLILDSSSKIRDLNANTELEVTEGQSVGVHGEAACIQIAHLDLKNVSDGDKWEASCLITFPLIDFKTMHLQRDGEEPFPAFKSWQEDSESGEAQLSPQAARMTHHPLGEDCPPVLSHRSLDFGQSQRFLHDPEALDFSSKALSFTRIRRSSFSSKDEKREDRTPYQLVKKLQKKIRQFEEQFERERNSKPSYSDIAANPKVLKWMTELTKLRKQIKDAKHKNSDGEFVPQTRPRSNTLPKSFGSSLGHEDSESDGEPRAIQKEKTPSKEATLELITKRLKENRAERHLPEDVKKMTKDHLIEEKTSLQKSLLYYESQHGRPVTREERHIVKPLYDRYRLVKQMLTRASITPVLGSPSTKRRGQMLQPIIEGETAHFFEEIKEEEEDGVSLSSELGDILSTAVHTQSSLENSESDAEEKLARDLCLSSTRAASMPELLEQLWKARAEKKKLRKTLREFEEAFYQQNGRNAQKEDRVPVLEEYKEYKRIKAKLRLLEVLISKQDSSKSI", "length": 871 }, "evidence": [ { "id": "A0A287BT14", "url": "https://omabrowser.org/oma/group/A0A287BT14/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E7FEF1-1", "protein_name": "Protein FAM13B", "gene_name": "fam13b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRKSLSTSLSDSLSTTRVFGIPLEEVQHSGQPGHEVPLLVRSIVEYIEEHGGLHLSLFLVNGNAERVEWLRQRYDSGVEVNLEKEADLASAVSLLRLFLQELPEPIIPAGLQAQIMQLYQDYSIEEELGRNMKYFLQQLPQVNYSLLRFLCRFLSGVASLQEESWSLGALAAVFGPDIFHLDTDVEDLKEQESVSRILAELLENQEEFFESEDEDISNTNDYSSINDQITELLEEEKLDACEELPRDGEDGPSSLSPKHAQVAPSSSSHIASISILPGSADIIQRTIRAAVEQHLLDLQTSIDKELGSYESQVLDSKPIHGNSPTLKTPGPEDHEDVQSESEAETETLPEVTEEGLPSENSEESQGSQLSSPIMEESSGMDLDTETLIETESLGAERLEKHSDYEQMDQTDVTTCEPDDCDLNANSESTEPASGFQSSTRSMFLEGEQEASCPINFPPIDFTCMHLQREGNDPMPVFMSWQEETESGEAQLSPLAGRMMPLPLEEDAHPLLARRFLDFGHSQRFLQQDHDASSSTKTLSCGRPRRASLSSKDSVKGDNVSQQLTKKLQNLKKKIKQFDEQFEKERNYKPSHADKAADPKVLKWMTDLTKIRKQLKGRHHLLPKGSLRHQAVLQSYRCHSSSSSVPNTPHITLSRPLASRQSPHFYAKHKAESELTPQTRPRSNTLPKSFGSTLDQSAYEDTVEIEARGHRPTREETLELIQQCIQSKRDEDGWPEDVRKMTKEQLASEKTVLQKNLLYYEGLHGRPVTREERLIVKPLYDRYRLVKQMLTRVSITPIIASPSSKRRNQMLQPIIEGETAHFCGEIEEEEEDEGRGQQENVEMQSECSDIIMDPVAQPSSQHPTQENILSSGKLNLDLRLSSTNASSMPELLEQLWKARAEKKKLRRTIREFEDEFYQQNGRNVQKEDRLPMMDEYKEYKRIKAKLRLLEVLISKQDSSKSI", "length": 961 }, "evidence": [ { "id": "A0A287BT14", "url": "https://omabrowser.org/oma/group/A0A287BT14/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q559A0-1", "protein_name": "Rho GTPase-activating protein gacU", "gene_name": "gacU", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSSKKTLTNFWKDPSTGNLVSPSPSSINGGASSSGGGGSTISPTKLAKEGPVFGVPLNDIFKRNSTNVHNVPNVIWHISSNIRQSAMDVEGLFRIPGSNTTLQLLKKNYNEGKIGTKDDLNDKCDDIHTQASLLKLFIRELPDPLFTFSLYDSFIKSHGSKDKSIRVGSLKMLLGQLPIAHFSLLKFLAELLREVSTHSVNNRMTSTNLAIVFGPTVMRPQTEDIVKMIEDARHINGIFLLIIDEYEFLFNVMYINRNRNININIYLWKSKKNPKISFQFWNFLFFILVFFFEQPTFANNPSPNTSRNNLNSSVRQSPNKGFVSSNPNRKASKFEFSVVDDVENNSNDINNNIKLNTNNNNNSGKSQQQLLQQLQMQQLLSISPNSSVIGINQQNANNNSGNNNNNNNNNNSSNNQNKFSILLPVNNHPQPTLLAPSSPSSSIYGRNNSNGINNGATSPLPPASPRSSLTLLDMNHLNCGVNDYSGGYNNNINNSIGNNELIRGLIKKTCSILFDKELTSLTDGFEITKDETFIPAFDTSNINNHHSSPTSNSVNNNNSNNNNNNNNSSNNNNNTLNSDISQISPRFSRANEISSASNSSTSSPQLRSLLKSHVNNNLNNLNNLPNLLGNLQAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLKNQSDENNNVTINNSNNNNNTPTSPVLNIINNAPITIPSSPPLNTVTSNLSPSTPYNESNNNNINNNNNNNNNNNNNNNNNNNNNNNNNINSNSNNNPLDIAFSHLEKVRKEGKRNSDINLMSIDELNEEKSAIKKELRDFDTNFKRQYGQLPRKNDKEIMRPLYIRYREVKSLIDLKSPQSVTSTLSNSSSLPSTPISLSSSNSLNKSQPSNNNNNNNNNNNNNNNANNTNTNNSNNNNNNNNNNNNNNINNNSNTANMSNSTSTLSSSGQHQLERANSSSSITSAAGIGGGSNSKSSTSPPNVVSPYISPSTSFNSLTELSNHQNNNNSNNNNNNNNNIDTSAPMIVDSHQYNSGNSNSNSNSNSNSNSSSKSSSPNITDFTKLSLNELKDRYIKVKGEKRSLQIDLHRYQSEFTKKHGRKVQFVEDRVPVQAEYEKYKELKIEIVALENILVLINNNHNHNHNHNHNHNNNNNNNNNNNNNNNNNHTTLYHL", "length": 1164 }, "evidence": [ { "id": "A0A287BT14", "url": "https://omabrowser.org/oma/group/A0A287BT14/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8K2H3-1", "protein_name": "Protein FAM13B", "gene_name": "Fam13b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRKSSSPSLSNCNSDLASKIFGIPLDELQQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETVEWLRQRYDSGEEVDLVKEADVPSAISLLRFFLQELPEPVIPGSLHIHLLQLSQDYNNEDEFGRKLRFLLQQLPPVNYSLLKFLCRFLANVASHHEEIWSANSLAAVFGPDVFHIYTDVEDMKEQEIVSRIMAGLLENYYEFFENEEEDFSSNDLSSITEQVNELSEEEEEDEKLEHIEELPEEGVEKSAGMPEVLQLRMTENLLDSDSVTASTRIDAAAATTTNASDGNIKCSKPVAGTTADNEVMQQDFVFEDQKNNESVGILLEPCSDHGDSEDGCPERKEYLLCDSDKLPHLILDSSSKIRDLNANTELEVTEGQSVGVQGEAACIQIAQLDLKNVSDGDKWEEPFPAFKSWQEDCESGEAQLSPQAARMTHHPLGEDCPPVLSHRSLDFGQSQRFLHDPEALDFSSKALSFTRIRRSSFSSKDEKREDRTPYQLVKKLQKKIRQFEEQFERERNSKPSYSDIAANPKVLKWMTELTKLRKQIKDAKHKNSDGEFAPQTRPRSNTLPKSFGSSLDHEDGESEGEPRVIQKEKTPSKEATLELITKRLKENRAERHLPEDIKKMTKDHLIEEKTSLQKSLLYYESQHGRPVTREERHIVKPLYDRYRLVKQMLTRASITPVLGSPSTKRRGQMLQPIIEGETAHFFEEIKEEEEDGVSLSSELGDILSTSVHTQSSLENLESDAEENQEKLARDLCLSSTRAASVPELLEQLWKARAEKKKLRKMLREFEEAFYQQNGRNAQKEDRVPVLEEYKEYKRIKAKLRLLEVLISKQDSSKSI", "length": 851 }, "evidence": [ { "id": "A0A287BT14", "url": "https://omabrowser.org/oma/group/A0A287BT14/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NYF5-1", "protein_name": "Protein FAM13B", "gene_name": "FAM13B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRKSSSPSLSNCNSVLANKIFGIPLDELQQGGHPDNEVPFIVRHVVDYIEEHGGLEQQGLFQVNGNAETVEWLRQRYDSGEEVDLVKEADVPSAISLLRFFLQELPEPVIPGSLHIHLMQLSQDYNNEDEFGRKLRFLLQQLPPVNYSLLKFLCRFLANVASHHEEIWSANSLAAVFGPDVFHIYTDVEDMKEQEIVSRIMAGLLENYYEFFENEEEDFSSNDLSSITEQVNELSEEEEEDEKLEHIEELPEEGAEKSNDMPEVVQLRMTENILESNSVTATSTHISPISILPASTDILERTIRAAVEQHLFDLQSSIDHDLKNLQQQSVVCNNEAESIHCDGEGSNNQIDIADDIINASESNRDCSKPVASTNLDNEAMQQDCVFENEENTQSVGILLEPCSDRGDSEDGCLEREEYLLFDSDKLSHLILDSSSKICDLNANTESEVPGGQSVGVQGEAACVSIPHLDLKNVSDGDKWEEPFPAFKSWQEDSESGEAQLSPQAGRMNHHPLEEDCPPVLSHRSLDFGQSQRFLHDPEKLDSSSKALSFTRIRRSSFSSKDEKREDRTPYQLVKKLQKKIRQFEEQFERERNSKPSYSDIAANPKVLKWMTELTKLRKQIKDAKHKNSDGEFVPQTRPRSNTLPKSFGSSLDHEDEENEDEPKVIQKEKKPSKEATLELILKRLKEKRIERCLPEDIKKMTKDHLVEEKASLQKSLLYYESQHGRPVTKEERHIVKPLYDRYRLVKQMLTRASITPVLGSPSTKRRGQMLQPIIEGETAHFFEEIKEEEEDGVNLSSELGDMLKTAVQVQSSLENSESDVEENQEKLALDLRLSSSRAASMPELLEQLWKARAEKKKLRKTLREFEEAFYQQNGRNAQKEDRVPVLEEYREYKKIKAKLRLLEVLISKQDSSKSI", "length": 915 }, "evidence": [ { "id": "A0A287BT14", "url": "https://omabrowser.org/oma/group/A0A287BT14/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A287BT14", "url": "https://www.uniprot.org/uniprotkb/A0A287BT14" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A287BT14", "url": "https://www.uniprot.org/uniprotkb/A0A287BT14" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" }, { "start_pos": 390, "end_pos": 392, "annotation": "n_glycosylation_sequon" }, { "start_pos": 424, "end_pos": 426, "annotation": "n_glycosylation_sequon" }, { "start_pos": 504, "end_pos": 506, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BT14-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 947, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BT14-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BT14" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BT14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BT14" }, { "id": "PS50238", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50238" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rho-GAP", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 212, "start_aa": "Ile", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 146, "end_pos": 148 }, { "start_pos": 390, "end_pos": 392 }, { "start_pos": 424, "end_pos": 426 }, { "start_pos": 504, "end_pos": 506 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480X2W7-1", "uniprot_ac": "A0A480X2W7", "uniprot_id": "A0A480X2W7_PIG", "mass": { "chemical_mass": 43114.0, "monoisotopic_mass": 43114.0 }, "refseq": { "ac": "XP_020955126", "name": "zinc finger protein DPF3", "summary": "", "url": 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] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051580", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051580", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156555", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156555", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CLQFTIN", "url": "https://omabrowser.org/oma/group/CLQFTIN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480X2W7", "url": "https://www.orthodb.org/?gene=A0A480X2W7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23057", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23057", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23057:SF4", "url": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY45-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY45-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5C0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5C0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5C0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5C0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RB08", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RB08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RB08-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RB08-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6V2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6V2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6V2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGD1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGD1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJ89", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJ89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJ89-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJ89-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3L6", "url": "https://www.uniprot.org/uniprotkb/F1S3L6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3L6-1", "url": "https://www.uniprot.org/uniprotkb/F1S3L6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATVIHNPLKALGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDTREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKASAFGCQA", "length": 378, "header": "tr|A0A480X2W7-1|A0A480X2W7_PIG Isoform 1 of Double PHD fingers 3 OS=Sus scrofa OX=9823 GN=DPF3 PE=1 SV=1 CANONICAL=A0A480X2W7-1" }, "isoforms": [ { "isoform_ac": "A0A287B1K9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480X2W7/entry#A0A287B1K9-1", "sequence": { "sequence": "MAPCISVAQQDWWTRLGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDTREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKASAFGCQA", "length": 382, "header": "tr|A0A287B1K9-1|A0A480X2W7_PIG Computationally mapped isoform of Double PHD fingers 3 OS=Sus scrofa OX=9823 GN=DPF3 PE=1 SV=2 CANONICAL=A0A480X2W7-1" }, "locus": { "chromosome": "7", "start_pos": 96156041, "end_pos": 95984533, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061046.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061046.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049971.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049971.2" } ] } }, { "isoform_ac": "A0A480X2W7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480X2W7/entry#A0A480X2W7-1", "sequence": { "sequence": "MATVIHNPLKALGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDTREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKASAFGCQA", "length": 378, "header": "tr|A0A480X2W7-1|A0A480X2W7_PIG Isoform 1 of Double PHD fingers 3 OS=Sus scrofa OX=9823 GN=DPF3 PE=1 SV=1 CANONICAL=A0A480X2W7-1" }, "locus": { "chromosome": "7", "start_pos": 96254290, "end_pos": 95984533, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098966.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098966.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079606.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079606.1" } ] } }, { "isoform_ac": "A0A5G2QAS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480X2W7/entry#A0A5G2QAS8-1", "sequence": { "sequence": "MNEWLSLIGQGQLCEASSRGGMVDRGAAWKPSWTARNLLLQVQRLGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDTREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKASAFGCQA", "length": 411, "header": "tr|A0A5G2QAS8-1|A0A480X2W7_PIG Computationally mapped isoform of Double PHD fingers 3 OS=Sus scrofa OX=9823 GN=DPF3 PE=1 SV=1 CANONICAL=A0A480X2W7-1" }, "locus": { "chromosome": "7", "start_pos": 96161913, "end_pos": 95984533, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087139.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087139.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061517.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061517.1" } ] } }, { "isoform_ac": "A0A5G2QY45-1", "url": "https://www.uniprot.org/uniprotkb/A0A480X2W7/entry#A0A5G2QY45-1", "sequence": { "sequence": "MNEWLSLIGQGQLCEASSRGGMVDRGAAWKPSWTARNLLLQVQRLGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDTREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSAHLGGEGRKEKEAAAAARTTEDLFGSTSESDTSTFHGFDEDDLEEPRSCRGRRSGRGSPTADKKGSC", "length": 390, "header": "tr|A0A5G2QY45-1|A0A480X2W7_PIG Computationally mapped isoform of Double PHD fingers 3 OS=Sus scrofa OX=9823 GN=DPF3 PE=1 SV=1 CANONICAL=A0A480X2W7-1" }, "locus": { "chromosome": "7", "start_pos": 96161913, "end_pos": 96039147, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069810.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069810.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069803.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069803.1" } ] } }, { "isoform_ac": "A0A5G2R5C0-1", "url": "https://www.uniprot.org/uniprotkb/A0A480X2W7/entry#A0A5G2R5C0-1", "sequence": { "sequence": "GDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDTREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSAHLGGEGRKEKEAAAAARTTEDLFGSTSESDTSTFHGFDEDDLEEPRSCRGRRSGRGSPTADKKGSC", "length": 345, "header": "tr|A0A5G2R5C0-1|A0A480X2W7_PIG Computationally mapped isoform of Double PHD fingers 3 OS=Sus scrofa OX=9823 GN=DPF3 PE=1 SV=2 CANONICAL=A0A480X2W7-1" }, "locus": { "chromosome": "7", "start_pos": 96140728, "end_pos": 96039147, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069443.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069443.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071514.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071514.2" } ] } }, { "isoform_ac": "A0A5G2RB08-1", "url": "https://www.uniprot.org/uniprotkb/A0A480X2W7/entry#A0A5G2RB08-1", "sequence": { "sequence": "DTSWFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDTREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSAHLGGEGRKEKEAAAAARTTEDLFGSTSESDTSTFHGFDEDDLEEPRSCRGRRSGRGSPTADKKGSC", "length": 346, "header": "tr|A0A5G2RB08-1|A0A480X2W7_PIG Computationally mapped isoform of Double PHD fingers 3 OS=Sus scrofa OX=9823 GN=DPF3 PE=1 SV=1 CANONICAL=A0A480X2W7-1" }, "locus": { "chromosome": "7", "start_pos": 96141034, "end_pos": 96039147, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067265.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067265.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074192.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074192.1" } ] } }, { "isoform_ac": "A0A8W4F6V2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480X2W7/entry#A0A8W4F6V2-1", "sequence": { "sequence": "FILGVSSSFVPWLGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDTREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKASAFGCQA", "length": 379, "header": "tr|A0A8W4F6V2-1|A0A480X2W7_PIG Computationally mapped isoform of Double PHD fingers 3 OS=Sus scrofa OX=9823 GN=DPF3 PE=1 SV=1 CANONICAL=A0A480X2W7-1" }, "locus": { "chromosome": "7", "start_pos": 96140965, "end_pos": 95984533, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099560.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099560.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074977.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074977.1" } ] } }, { "isoform_ac": "A0A8W4FGD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480X2W7/entry#A0A8W4FGD1-1", "sequence": { "sequence": "RLGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDTREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGECACRPGTVLLAFLCHLAGGGAERWGCRSDSGGILSGEGYPIILIFVFLRTKSYTLGSREKERRFWPVCVWPFHEVDISLCVVVDDRGTQWEHWRHSQHASLYRLMCT", "length": 389, "header": "tr|A0A8W4FGD1-1|A0A480X2W7_PIG Computationally mapped isoform of Double PHD fingers 3 OS=Sus scrofa OX=9823 GN=DPF3 PE=1 SV=1 CANONICAL=A0A480X2W7-1" }, "locus": { "chromosome": "7", "start_pos": 96140734, "end_pos": 96041849, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101996.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101996.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077369.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077369.1" } ] } }, { "isoform_ac": "A0A8W4FJ89-1", "url": "https://www.uniprot.org/uniprotkb/A0A480X2W7/entry#A0A8W4FJ89-1", "sequence": { "sequence": "MTRLGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDTREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGECACRPGTVLLAFLCHLAGGGAERWGCRSDSGGILSGEGYPIILIFVFLRTKSYTLGSREKERRFWPVCVWPFHEVDISLCVVVDDRGTQWEHWRHSQHASLYRLMCT", "length": 391, "header": "tr|A0A8W4FJ89-1|A0A480X2W7_PIG Computationally mapped isoform of Double PHD fingers 3 OS=Sus scrofa OX=9823 GN=DPF3 PE=1 SV=2 CANONICAL=A0A480X2W7-1" }, "locus": { "chromosome": "7", "start_pos": 96140874, "end_pos": 96041849, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105152.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105152.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079530.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079530.1" } ] } }, { "isoform_ac": "F1S3L6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480X2W7/entry#F1S3L6-1", "sequence": { "sequence": "MTLGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDTREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGECACRPGTVLLAFLCHLAGGGAERWGCRSDSGGILSGEGYPIILIFVFLRTKSYTLGSREKERRFWPVCVWPFHEVDISLCVVVDDRGTQWEHWRHSQHASLYRLMCT", "length": 390, "header": "tr|F1S3L6-1|A0A480X2W7_PIG Computationally mapped isoform of Double PHD fingers 3 OS=Sus scrofa OX=9823 GN=DPF3 PE=1 SV=4 CANONICAL=A0A480X2W7-1" }, "locus": { "chromosome": "7", "start_pos": 96180628, "end_pos": 96041849, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002596.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002596.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002531.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002531.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAS8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAS8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156555", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156555", "resource": "KEGG Pathway" }, { "id": "R-SSC-9933937", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9933937", "resource": "Reactome", "description": "Formation of the canonical BAF (cBAF) complex" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AL27-1", "protein_name": "Double PHD fingers 3", "gene_name": "Dpf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATVIHNPLKALGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDAREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKASAFGCQA", "length": 378 }, "evidence": [ { "id": "A0A480X2W7", "url": "https://omabrowser.org/oma/group/A0A480X2W7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A9LMC0-1", "protein_name": "Zinc finger protein DPF3", "gene_name": "dpf3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MATVIQNPLKALGDQFYREAIEHCRSYNARLCAERSVRMPFLDSQTGVAQNNCYIWMEKRHRGPGMAAGQMYTYPARCWRKKRRLHTPLDPQLRLCELRLEAELMAKREAPQTEATALEALLRGDGILDKRNNNAKEEETLLEIQRVLEADENGDGFHDDEDFEVDTPKRKHRNKGRGRGSGRRRTEAVANDDQDKPYVCDNRYKQKHNSKTADSVCGKRYKNRPGLSYHYAHTHLAEEEGEEERETEIPQSPPVHHENHKPQKAPDGSIIPNDYCDFCLGDSGSNRKTGQAEELVSCSDCGRSGHPSCLQFTDNMMQAVRTYQWQCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLKPPMTQPPEGSWSCHLCQNLLKDKASGVEDP", "length": 391 }, "evidence": [ { "id": "A0A480X2W7", "url": "https://omabrowser.org/oma/group/A0A480X2W7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1N0V2-1", "protein_name": "Double PHD fingers 3", "gene_name": "DPF3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATVIHNPLKALGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDAREEENIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKASAFGCQA", "length": 378 }, "evidence": [ { "id": "A0A480X2W7", "url": "https://omabrowser.org/oma/group/A0A480X2W7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P58269-1", "protein_name": "Zinc finger protein DPF3", "gene_name": "Dpf3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"MFLLLILSLGMKLHHTAALFTVTVPKETYMVDHGSNVTLECDFDTGGHVELRDLKANLQKVENNTILLSEKVTLLEEQLPLGKALFHIPQVHVRDAGQYRCFIIYGTAWDYKYLTLKVKASYKKIKTRNLKVPGTDEIELTCQGEGYPLAEVSWPNISVPANTSYTKTSEGLYQVTSVLRLKPHPGRNFSCVFWNANMKEFTLAIIVPGDMETHKTPASSLLRVFIPSFIIALMFIATMILLRKQLCQKFYPGKDTAKRSVITVRREVNRAI", "length": 272, "header": "tr|A0A480KNE1-1|A0A480KNE1_PIG Isoform 1 of Programmed cell death 1 ligand 2 OS=Sus scrofa OX=9823 GN=PDCD1LG2 PE=1 SV=1 CANONICAL=A0A480KNE1-1" }, "isoforms": [ { "isoform_ac": "A0A480KNE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KNE1/entry#A0A480KNE1-1", "sequence": { "sequence": "MFLLLILSLGMKLHHTAALFTVTVPKETYMVDHGSNVTLECDFDTGGHVELRDLKANLQKVENNTILLSEKVTLLEEQLPLGKALFHIPQVHVRDAGQYRCFIIYGTAWDYKYLTLKVKASYKKIKTRNLKVPGTDEIELTCQGEGYPLAEVSWPNISVPANTSYTKTSEGLYQVTSVLRLKPHPGRNFSCVFWNANMKEFTLAIIVPGDMETHKTPASSLLRVFIPSFIIALMFIATMILLRKQLCQKFYPGKDTAKRSVITVRREVNRAI", "length": 272, "header": "tr|A0A480KNE1-1|A0A480KNE1_PIG Isoform 1 of Programmed cell death 1 ligand 2 OS=Sus scrofa OX=9823 GN=PDCD1LG2 PE=1 SV=1 CANONICAL=A0A480KNE1-1" }, "locus": { "chromosome": "1", "start_pos": 216600333, "end_pos": 216555382, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054646.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054646.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053877.3", "url": "https://www.ensembl.org/id/ENSSSCP00000053877.3" } ] } }, { "isoform_ac": "A0A5G2QPQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KNE1/entry#A0A5G2QPQ3-1", "sequence": { "sequence": "MFLLLILSLGMKLHHTAALFTVTVPKETYMVDHGSNVTLECDFDTGGHVELRDLKANLQKVENNTILLSEKVTLLEEQLPLGKALFHIPQVHVRDAGQYRCFIIYGTAWDYKYLTLKVKASYKKIKTRNLKVPGTDEIELTCQGEGYPLAEVSWPNISVPANTSYTKTSEGLYQVTSVLRLKPHPGRNFSCVFWNANMKEFTLAIIVPGDMETHKTPASSLLRVFIPSFIIALMFIATMILLRKQLCQKFYPGKDTAKRSVITVRREVNRAVSNHDFTSLFHLFFLPSLN", "length": 290, "header": "tr|A0A5G2QPQ3-1|A0A480KNE1_PIG Computationally mapped isoform of Programmed cell death 1 ligand 2 OS=Sus scrofa OX=9823 GN=PDCD1LG2 PE=1 SV=1 CANONICAL=A0A480KNE1-1" }, "locus": { "chromosome": "1", "start_pos": 216600333, "end_pos": 216564371, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080590.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080590.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064059.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064059.1" } ] } }, { "isoform_ac": "A0A8W4FF47-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KNE1/entry#A0A8W4FF47-1", "sequence": { "sequence": "MVVKNNWTWQYLVLILAETYMVDHGSNVTLECDFDTGGHVELRDLKANLQKVENNTILLSEKVTLLEEQLPLGKALFHIPQVHVRDAGQYRCFIIYGTAWDYKYLTLKVKASYKKIKTRNLKVPGTDEIELTCQGEGYPLAEVSWPNISVPANTSYTKTSEGLYQVTSVLRLKPHPGRNFSCVFWNANMKEFTLAIIVPGDMETHKTPASSLLRVFIPSFIIALMFIATMILLRKQLCQKFYPGKDTAKRSVITVRREVNRAVSNHDFTSLFHLFFLPSLN", "length": 281, "header": "tr|A0A8W4FF47-1|A0A480KNE1_PIG Computationally mapped isoform of Programmed cell death 1 ligand 2 OS=Sus scrofa OX=9823 GN=PDCD1LG2 PE=1 SV=1 CANONICAL=A0A480KNE1-1" 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"header": "tr|A0A287B545-1|A0A480KSS8_PIG Computationally mapped isoform of V-set and transmembrane domain-containing protein 4 OS=Sus scrofa OX=9823 GN=VSTM4 PE=4 SV=3 CANONICAL=A0A480KSS8-1" }, "locus": { "chromosome": "14", "start_pos": 89739187, "end_pos": 89656696, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050976.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050976.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051607.3", "url": "https://www.ensembl.org/id/ENSSSCP00000051607.3" } ] } }, { "isoform_ac": "A0A287BDQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KSS8/entry#A0A287BDQ2-1", "sequence": { "sequence": "MRLLALTAAVLLARAPAPEVCGALNVTVSPGPVVDYLEGENATLLCHVSQKRRKDSLLAVRWFFARPDAQEVLMVKMTKLRMVQYYGNFSRSAYRQRLRLLEQRRGTLYTLSVLTLRPADQGHYVCKVQEISKHRNKWTAWSNGSSATEMRGFLSRPPARGASPGDLSTLPHPLPLTVDCWTTVFSFFPCS", "length": 191, "header": "tr|A0A287BDQ2-1|A0A480KSS8_PIG Computationally mapped isoform of V-set and transmembrane domain-containing protein 4 OS=Sus scrofa OX=9823 GN=VSTM4 PE=4 SV=2 CANONICAL=A0A480KSS8-1" }, "locus": { "chromosome": "14", "start_pos": 89739187, "end_pos": 89728613, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056411.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056411.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054668.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054668.2" } ] } }, { "isoform_ac": "A0A480KSS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KSS8/entry#A0A480KSS8-1", "sequence": { "sequence": "MRLLALTAAVLLARAPAPEVCGALNVTVSPGPVVDYLEGENATLLCHVSQKRRKDSLLAVRWFFARPDAQEVLMVKMTKLRMVQYYGNFSRSAYRQRLRLLEQRRGTLYTLSVLTLRPADQGHYVCKVQEISKHRNKWTAWSNGSSATEMRVISLKASEDSSFEKKKETWAFFEDLYVYAVLVCCVGILSVLLFTLTIIWQSLFSKRKSRVRHYLVKCPQNSSGETVTSVTSLAPLQPKKGKRRKEKADVPPAVPAKAPIAATFHKPKLLKPQRKVALPKIAEENLTYAELELIKPNQAAKGVPTSTVYAQILFEENKL", "length": 319, "header": "tr|A0A480KSS8-1|A0A480KSS8_PIG Isoform 1 of V-set and transmembrane domain-containing protein 4 OS=Sus scrofa OX=9823 GN=VSTM4 PE=4 SV=1 CANONICAL=A0A480KSS8-1" }, "locus": { "chromosome": "14", "start_pos": 89739187, "end_pos": 89651992, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078866.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078866.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060845.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060845.2" } ] } }, { "isoform_ac": "A0A5G2R1Q4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KSS8/entry#A0A5G2R1Q4-1", "sequence": { "sequence": "MRLLALTAAVLLARAPAPEVCGALNVTVSPGPVVDYLEGENATLLCHVSQKRRKDSLLAVRWFFARPDAQEVLMVKMTKLRMVQYYGNFSRSAYRQRLRLLEQRRGTLYTLSVLTLRPADQGHYVCKVQEISKHRNKWTAWSNGSSATEMRVISLKASEDSSFEKKKETWAFFEDLYVYAVLVCCVGILSVLLFTLTIIWQSLFSKRKSRVRHYLVKCPQNSSGETVTSVTSLAPLQPKKGKRRKEKADVPPAVPAKAPIAATFHKPKLLKPQRKVALSCLRNSVNDSNHAPSSWCFVPKQSHSLFLGQLLRQIFSMLSSQRSF", "length": 324, "header": "tr|A0A5G2R1Q4-1|A0A480KSS8_PIG Computationally mapped isoform of V-set and transmembrane domain-containing protein 4 OS=Sus scrofa OX=9823 GN=VSTM4 PE=4 SV=1 CANONICAL=A0A480KSS8-1" }, "locus": { "chromosome": "14", "start_pos": 89739187, "end_pos": 89674540, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085340.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085340.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070280.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070280.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1Q4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1Q4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157009", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157009", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9S5S5-1", "protein_name": "V-set and transmembrane domain-containing protein 4", "gene_name": "VSTM4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLLALAVAVLLARAPAPEVCGALNVTVSPGPVVDYLEGENATLLCHVSQKRRKDSLLAVRWFFARPDSQEALMVKMTKLRIVQYYGNFSRSAYRQRLRLLEERRGALYTLSVLTLQPTDQGHYVCKVQEISKHRNKWTAWSNGSSGTEMRVISLKSSEDSSVEKKKETWAFFEDLYVYAVLVCCVGILSVLLFTLTIIWQSVFSKRKSRVRHYLVKCPQNSSGETVTSVTSLAPLQPKKGKRRKEKADVPPAVPAKAPIATTFHKPKLLKPQRKVTLPKIAEENLTYAELELIKPHRAAKGIPTSTVYAQILFEENKL", "length": 319 }, "evidence": [ { "id": "A0A480KSS8", "url": "https://omabrowser.org/oma/group/A0A480KSS8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1C946-1", "protein_name": "V-set and transmembrane domain-containing protein 4", "gene_name": "VSTM4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLLATALAALLASAPAPDVCKALNVTVSPGPTVRYSEGDNATLYCHISQKRKTDNLLAVRWVFAVSPTQEYLMIKMTKFGSVQYYGNYTHHFHKQRLRLHKEKHGTMYKFLILSLQQTDQGHYICKVQEIGKHRNKWTAWSNGTAATEIRVISSKASDDPTYKKKHEAWKFFEDLYVYAVFVCSIGIISVLLFTLVILCQSLLNKRRCTVKHYLVKCPQNSSGETVTSVTSMSPLQPKKLKKRKEKAELPPAIPEKAPIANIPKPKLLKPQRKLMLPKIAEENLTYAELELMKPIQEAKGIPSTTVYAQILFEENKM", "length": 318 }, "evidence": [ { "id": "A0A480KSS8", "url": "https://omabrowser.org/oma/group/A0A480KSS8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8IW00-1", "protein_name": "V-set and transmembrane domain-containing protein 4", "gene_name": "VSTM4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRLLALAAAALLARAPAPEVCAALNVTVSPGPVVDYLEGENATLLCHVSQKRRKDSLLAVRWFFAHSFDSQEALMVKMTKLRVVQYYGNFSRSAKRRRLRLLEEQRGALYRLSVLTLQPSDQGHYVCRVQEISRHRNKWTAWSNGSSATEMRVISLKASEESSFEKTKETWAFFEDLYVYAVLVCCVGILSILLFMLVIVWQSVFNKRKSRVRHYLVKCPQNSSGETVTSVTSLAPLQPKKGKRQKEKPDIPPAVPAKAPIAPTFHKPKLLKPQRKVTLPKIAEENLTYAELELIKPHRAAKGAPTSTVYAQILFEENKL", "length": 320 }, "evidence": [ { "id": "A0A480KSS8", "url": "https://omabrowser.org/oma/group/A0A480KSS8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A480KSS8", "url": "https://www.uniprot.org/uniprotkb/A0A480KSS8" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": 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}, { "id": "A0A8W4FFR0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFR0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPVSQLASAGTFRALKEPLAFLRALELLFAIFAFATCGGYSGGLRLSVDCVNKTESNLSIDVAFAYPFRLHQVTFEVPTCEGKERQKVALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCTAVHSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEKHSSSFNQGGYNQDSYGSSSGYSQQASLGPSSDEFGQQPSGPASFTNQI", "length": 285, "header": "tr|A0A480EFR8-1|A0A480EFR8_PIG Isoform 1 of Synaptoporin OS=Sus scrofa OX=9823 GN=SYNPR PE=1 SV=1 CANONICAL=A0A480EFR8-1" }, "isoforms": [ { "isoform_ac": "A0A286ZQM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EFR8/entry#A0A286ZQM7-1", "sequence": { "sequence": 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"MCMVIFAPLFAIFAFATCGGYSGGLRLSVDCVNKTESNLSIDVAFAYPFRLHQVTFEVPTCEGKERQKVALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCTAVHSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEKHSSSFNQGGYNQDSYGSSSGYSQQASLGPSSDEFGQQPSGPASFTNQI", "length": 265, "header": "tr|A0A4X1VAN4-1|A0A480EFR8_PIG Computationally mapped isoform of Synaptoporin OS=Sus scrofa OX=9823 GN=SYNPR PE=1 SV=1 CANONICAL=A0A480EFR8-1" }, "locus": { "chromosome": "13", "start_pos": 45163384, "end_pos": 44998138, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086929.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086929.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060969.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060969.1" } ] } }, { "isoform_ac": "A0A4X1VAN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EFR8/entry#A0A4X1VAN9-1", "sequence": { "sequence": "KLFAIFAFATCGGYSGGLRLSVDCVNKTESNLSIDVAFAYPFRLHQVTFEVPTCEGKERQKVALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCTAVHSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEKHSSSFNQGGYNQDSYGSSSGYSQQASLGPSSDEFGQQPSGPASFTNQI", "length": 258, "header": "tr|A0A4X1VAN9-1|A0A480EFR8_PIG Computationally mapped isoform of Synaptoporin OS=Sus scrofa OX=9823 GN=SYNPR PE=1 SV=1 CANONICAL=A0A480EFR8-1" }, "locus": { "chromosome": "13", "start_pos": 45163384, "end_pos": 44904095, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023657.2", "url": "https://www.ensembl.org/id/ENSSSCT00000023657.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024856.2", "url": "https://www.ensembl.org/id/ENSSSCP00000024856.2" } ] } }, { "isoform_ac": "A0A4X1VFG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EFR8/entry#A0A4X1VFG0-1", "sequence": { "sequence": "MCMVIFAPLFAIFAFATCGGYSGGLRLSVDCVNKTESNLSIDVAFAYPFRLHQVTFEVPTCEGKERQKVALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLIVFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEKHSSSFNQGGYNQDSYGSSSGYSQQASLGPSSDEFGQQPSGPASFTNQI", "length": 201, "header": "tr|A0A4X1VFG0-1|A0A480EFR8_PIG Computationally mapped isoform of Synaptoporin OS=Sus scrofa OX=9823 GN=SYNPR PE=1 SV=1 CANONICAL=A0A480EFR8-1" }, "locus": { "chromosome": "13", "start_pos": 45163384, "end_pos": 44998138, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094845.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094845.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074884.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074884.1" } ] } }, { "isoform_ac": "A0A5G2QR32-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EFR8/entry#A0A5G2QR32-1", "sequence": { "sequence": "MDPVSQLASAGTFRALKEPLAFLRALELVTPGDV", "length": 34, "header": "tr|A0A5G2QR32-1|A0A480EFR8_PIG Computationally mapped isoform of Synaptoporin OS=Sus scrofa OX=9823 GN=SYNPR PE=1 SV=1 CANONICAL=A0A480EFR8-1" }, "locus": { "chromosome": "13", "start_pos": 45114686, "end_pos": 44841426, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076137.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076137.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064511.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064511.1" } ] } }, { "isoform_ac": "A0A5G2QS99-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EFR8/entry#A0A5G2QS99-1", "sequence": { "sequence": "MPHFKNTIASFNVDAKPLYISHEIKAILIPTFSFVCLCSPQLFAIFAFATCGGYSGGLRLSVDCVNKTESNLSIDVAFAYPFRLHQVTFEVPTCEGKERQKVALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLITKLFLGFKSSSWLLQSCLVPAPMLGTRNTLQKDAAPGLKLPALFLLPLGGKSVMVRQWGTTGSRIQALYPEYLCPHLSTTVCHLCDFRQVTEPLWACFSSPVK", "length": 252, "header": "tr|A0A5G2QS99-1|A0A480EFR8_PIG Computationally mapped isoform of Synaptoporin OS=Sus scrofa OX=9823 GN=SYNPR PE=1 SV=2 CANONICAL=A0A480EFR8-1" }, "locus": { "chromosome": "13", "start_pos": 45123872, "end_pos": 45043781, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075896.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075896.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064882.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064882.2" } ] } }, { "isoform_ac": "A0A8W4FFR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EFR8/entry#A0A8W4FFR0-1", "sequence": { "sequence": "MCTILIPTFSFVCLCSPQLFAIFAFATCGGYSGGLRLSVDCVNKTESNLSIDVAFAYPFRLHQVTFEVPTCEGKERQKVALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCTAVHSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWHSSGQRYLSDPMEKHSSSFNQGGYNQDSYGSSSGYSQQASLGPSSDEFGQQPSGPASFTNQI", "length": 275, "header": "tr|A0A8W4FFR0-1|A0A480EFR8_PIG Computationally mapped isoform of Synaptoporin OS=Sus scrofa OX=9823 GN=SYNPR PE=1 SV=1 CANONICAL=A0A480EFR8-1" }, "locus": { "chromosome": "13", "start_pos": 45163384, "end_pos": 45043565, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098694.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098694.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077704.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077704.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VAN9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VAN9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A480EFR8", "url": "https://www.uniprot.org/uniprotkb/A0A480EFR8" } ], "pmid": "" }, { "name": "synaptic vesicle", "id": "GO:0008021", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008021", "evidence": [ { "database": "UniProtKB", "id": "A0A480EFR8", "url": "https://www.uniprot.org/uniprotkb/A0A480EFR8" } ], "pmid": "" }, { "name": "synaptic vesicle membrane", "id": "GO:0030672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030672", "evidence": [ { "database": "UniProtKB", "id": "A0A480EFR8", "url": "https://www.uniprot.org/uniprotkb/A0A480EFR8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 197, "end_pos": 199, "annotation": "n_glycosylation_sequon" }, { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" }, { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480EFR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480EFR8" }, { "id": "PS51225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MARVEL", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 222, "start_aa": "Ala", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 197, "end_pos": 199 }, { "start_pos": 53, "end_pos": 55 }, { "start_pos": 58, "end_pos": 60 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480M0G4-1", "uniprot_ac": "A0A480M0G4", "uniprot_id": "A0A480M0G4_PIG", "mass": { "chemical_mass": 52987.0, "monoisotopic_mass": 52987.0 }, "refseq": { "ac": "XP_013852916", "name": "ataxin-10 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852916" }, "gene_names": [ { "name": "ATXN10", "type": "recommended", "evidence": [ { "id": "A0A480M0G4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4" } ] }, { "name": "ATXN10", "type": "synonym", "evidence": [ { "id": "XP_013852916", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852916" } ] } ], "protein_names": [ { "name": "Ataxin-10", "type": "recommended", "evidence": [ { "id": "A0A480M0G4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4/entry#names_and_taxonomy" } ] }, { "name": "ataxin-10 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013852916", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852916" } ] } ], "function": [ { "annotation": "May play a role in the regulation of cytokinesis. May play a role in signaling by stimulating protein glycosylation. Induces neuritogenesis by activating the Ras-MAP kinase pathway and is necessary for the survival of cerebellar neurons. Does not appear to play a major role in ciliogenesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9Q8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Q8#function" }, { "database": "UniProtKB", "id": "ARBA00045173", "url": "https://www.uniprot.org/uniprotkb/ARBA00045173#function" }, { "database": "UniProtKB", "id": "A0A5G2R1F6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1F6#function" }, { "database": "UniProtKB", "id": "I3LPU4", "url": "https://www.uniprot.org/uniprotkb/I3LPU4#function" }, { "database": "UniProtKB", "id": "A0A480M0G4", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4#function" }, { "database": "UniProtKB", "id": "I3LCM4", "url": "https://www.uniprot.org/uniprotkb/I3LCM4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480M0G4", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ATXN10", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4", "locus": { "chromosome": "5", "start_pos": 3637111, "end_pos": 3798201, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024864", "url": "https://www.ensembl.org/id/ENSSSCG00000024864" } ] } } ], "crossref": [ { "id": "ENSSSCG00000024864", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024864", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "414389", "url": "https://www.ncbi.nlm.nih.gov/gene/414389", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051374", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051374", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:414389", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:414389", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CAWESPP", "url": "https://omabrowser.org/oma/group/CAWESPP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480M0G4", "url": "https://www.orthodb.org/?gene=A0A480M0G4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13255", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13255", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13255:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13255:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09759", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09759", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013852916", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852916", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BEG1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480M0G4", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480M0G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9Q8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Q8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Q8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR51", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR51-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR51-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1F6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1F6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1F6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1F6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LCM4", "url": "https://www.uniprot.org/uniprotkb/I3LCM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LCM4-1", "url": "https://www.uniprot.org/uniprotkb/I3LCM4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LPU4", "url": "https://www.uniprot.org/uniprotkb/I3LPU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LPU4-1", "url": "https://www.uniprot.org/uniprotkb/I3LPU4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPRPPPARLSGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSRAVELACREPAQVDHLAASLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEASQRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMKELEENLNIAIDVVEAHRKQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVALLDLTIAKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAVLHLTAEQPTGDEEALATIRLLDVLCEMTANTDLLGYLQVFPGLLERVIDLLRLIHAAGSDTTSIFSPCASIKAEGDITNVAEGFKSHLIRLIGNLCYKNKENQDKVSELDGIPLILDSCGIDDSNPFLTQWVVYAIRNLTEDNSRNQDLIAKMEEQGLADPSLLKKMGFEVEKRGDKLILKSASDTPQL", "length": 475, "header": "tr|A0A480M0G4-1|A0A480M0G4_PIG Isoform 1 of Ataxin-10 OS=Sus scrofa OX=9823 GN=ATXN10 PE=1 SV=1 CANONICAL=A0A480M0G4-1" }, "isoforms": [ { "isoform_ac": "A0A287BEG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4/entry#A0A287BEG1-1", "sequence": { "sequence": "MAAPRPPPARLSGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSRAVELACREPAQVDHLAASLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEASQRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMKELEENLNIAIDVVEAHRKQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVALLDLTIAKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAVLHLTAEQPTGDEEALATIRLLDVLCEMTANTDLLGYLQVFPGLLERVIDLLRLIHAAGSDTTSIFSPCASIKAEGDITNVAEGFKSHLIRLIGNLCYKNKENQDKVTFLSEGSVFHIFEGNAKPVLPEKQVFIKLTLCAKRPAECRRGAGERSDPSP", "length": 443, "header": "tr|A0A287BEG1-1|A0A480M0G4_PIG Computationally mapped isoform of Ataxin-10 OS=Sus scrofa OX=9823 GN=ATXN10 PE=1 SV=2 CANONICAL=A0A480M0G4-1" }, "locus": { "chromosome": "5", "start_pos": 3797972, "end_pos": 3700017, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065839.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065839.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054934.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054934.2" } ] } }, { "isoform_ac": "A0A480M0G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4/entry#A0A480M0G4-1", "sequence": { "sequence": "MAAPRPPPARLSGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSRAVELACREPAQVDHLAASLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEASQRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMKELEENLNIAIDVVEAHRKQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVALLDLTIAKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAVLHLTAEQPTGDEEALATIRLLDVLCEMTANTDLLGYLQVFPGLLERVIDLLRLIHAAGSDTTSIFSPCASIKAEGDITNVAEGFKSHLIRLIGNLCYKNKENQDKVSELDGIPLILDSCGIDDSNPFLTQWVVYAIRNLTEDNSRNQDLIAKMEEQGLADPSLLKKMGFEVEKRGDKLILKSASDTPQL", "length": 475, "header": "tr|A0A480M0G4-1|A0A480M0G4_PIG Isoform 1 of Ataxin-10 OS=Sus scrofa OX=9823 GN=ATXN10 PE=1 SV=1 CANONICAL=A0A480M0G4-1" }, "locus": { "chromosome": "5", "start_pos": 3797972, "end_pos": 3639681, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070263.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070263.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068580.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068580.2" } ] } }, { "isoform_ac": "A0A5G2Q9Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4/entry#A0A5G2Q9Q8-1", "sequence": { "sequence": "MAAPRPPPARLSGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSRAVELACREPAQVDHLAASLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEASQRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMKELEENLNIAIDVVEAHRKQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVALLDLTIAKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAVLHLTAEQPTGDEEALATIRLLDVLCEMTANTDLLGYLQVFPGLLERVIDLLRLIHAAGSDTTSIFSPCASIKAEGDITNVAEGFKSHLIRLIGNLCYKNKENQDKVSELDGIPLILDSCGIDDSNPFLEAAAGSLVGLFLRPKPPPQSQAAGVAPLSLCRGVSSAFHAAPAHGPAVLEEPEADGPRWLCVPCMGLRSRVQTVCVPRGQCKEFSCFSVEMGSIRSCGRSILRVA", "length": 519, "header": "tr|A0A5G2Q9Q8-1|A0A480M0G4_PIG Computationally mapped isoform of Ataxin-10 OS=Sus scrofa OX=9823 GN=ATXN10 PE=1 SV=1 CANONICAL=A0A480M0G4-1" }, "locus": { "chromosome": "5", "start_pos": 3797972, "end_pos": 3663895, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069372.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069372.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060058.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060058.1" } ] } }, { "isoform_ac": "A0A5G2QR51-1", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4/entry#A0A5G2QR51-1", "sequence": { "sequence": "MAAPRPPPARLSGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSRAVELACREPAQVDHLAASLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTACLNHPDKKIVAYSSMILFTSLSSERMKELEENLNIAIDVVEAHRKQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVALLDLTIAKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAVLHLTAEQPTGDEEALATIRLLDVLCEMTANTDLLGYLQVFPGLLERVIDLLRLIHAAGSDTTSIFSPCASIKAEGDITNVAEGFKSHLIRLIGNLCYKNKENQDKVSELDGIPLILDSCGIDDSNPCRPWGPRPSGPFPAACSGGSGWLSGWLVPETEAASSESGSWGRAPQPVQGSELRFSRCPSARPSCAGRARGRRPPLALCSLHGAKVTRPDCMCPSGSV", "length": 477, "header": "tr|A0A5G2QR51-1|A0A480M0G4_PIG Computationally mapped isoform of Ataxin-10 OS=Sus scrofa OX=9823 GN=ATXN10 PE=1 SV=1 CANONICAL=A0A480M0G4-1" }, "locus": { "chromosome": "5", "start_pos": 3797972, "end_pos": 3663968, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089361.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089361.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060755.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060755.1" } ] } }, { "isoform_ac": "A0A5G2R1F6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4/entry#A0A5G2R1F6-1", "sequence": { "sequence": "MAAPRPPPARLSGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSRAVELACREPAQVDHLAASLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEASQRVVWMHAFPELFLFLIITDHFLKSPELVKAMYAKMSNQERVALLDLTIAKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAVLHLTAEQPTGDEEALATIRLLDVLCEMTANTDLLGYLQVFPGLLERVIDLLRLIHAAGSDTTSIFSPCASIKAEGDITNVAEGFKSHLIRLIGNLCYKNKENQDKVSELDGIPLILDSCGIDDSNPFLTQWVVYAIRNLTEDNSRNQDLIAKMEEQGLADPSLLKKMGFEVEKRGDKLILKSASDTPQLVSTATLSVHRQWSLLPHHRGWDTVAP", "length": 448, "header": "tr|A0A5G2R1F6-1|A0A480M0G4_PIG Computationally mapped isoform of Ataxin-10 OS=Sus scrofa OX=9823 GN=ATXN10 PE=1 SV=2 CANONICAL=A0A480M0G4-1" }, "locus": { "chromosome": "5", "start_pos": 3797972, "end_pos": 3639603, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072203.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072203.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064352.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064352.2" } ] } }, { "isoform_ac": "I3LCM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4/entry#I3LCM4-1", "sequence": { "sequence": "MAAPRPPPARLSGVMVPAPIQDLEALRALTALFKEQRNRNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEASQRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMKELEENLNIAIDVVEAHRKQPESEWPFLIITDHFLKSPELVKAMYAKMSNQERVALLDLTIAKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAVLHLTAEQPTGDEEALATIRLLDVLCEMTANTDLLGYLQVFPGLLERVIDLLRLIHAAGSDTTSIFSPCASIKAEGDITNVAEGFKSHLIRLIGNLCYKNKENQDKVSELDGIPLILDSCGIDDSNPFLTQWVVYAIRNLTEDNSRNQDLIAKMEEQGLADPSLLKKMGFEVEKRGDKLILKSASDTPQL", "length": 411, "header": "tr|I3LCM4-1|A0A480M0G4_PIG Computationally mapped isoform of Ataxin-10 OS=Sus scrofa OX=9823 GN=ATXN10 PE=1 SV=3 CANONICAL=A0A480M0G4-1" }, "locus": { "chromosome": "5", "start_pos": 3797972, "end_pos": 3639681, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032275.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032275.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021799.3", "url": "https://www.ensembl.org/id/ENSSSCP00000021799.3" } ] } }, { "isoform_ac": "I3LPU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4/entry#I3LPU4-1", "sequence": { "sequence": "MAAPRPPPARLSGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSRAVELACREPAQVDHLAASLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEASQRVVWMHAFPELFLSCLNHPDKKIVAYSSMILFTSLSSERMKELEENLNIAIDVVEAHRKQPESEWPVALLDLTIAKIAGEEPLTKDDVPVFLSHAELVASAFVDQCRAVLHLTAEQPTGDEEALATIRLLDVLCEMTANTDLLGYLQVFPGLLERVIDLLRLIHAAGSDTTSIFSPCASIKAEGDITNVAEGFKSHLIRLIGNLCYKNKENQDKVSELDGIPLILDSCGIDDSNPFLTQWVVYAIRNLTEDNSRNQDLIAKMEEQGLADPSLLKKMGFEVEKRGDKLILKSASDTPQLVSTATLSVHRQWSLLPHHRGWDTVAP", "length": 474, "header": "tr|I3LPU4-1|A0A480M0G4_PIG Computationally mapped isoform of Ataxin-10 OS=Sus scrofa OX=9823 GN=ATXN10 PE=1 SV=3 CANONICAL=A0A480M0G4-1" }, "locus": { "chromosome": "5", "start_pos": 3797972, "end_pos": 3639603, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023423.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023423.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026121.3", "url": "https://www.ensembl.org/id/ENSSSCP00000026121.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR51", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR51" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:414389", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:414389", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PLC3-1", "protein_name": "Ataxin-10", "gene_name": "ATXN10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAKEGALPEAAARLKRFMAAEPSARLESVRALTGLFREAQPREMAEESLFRDLLEILIKASNEIEQACKDSSELLDLDTCLVLTAECFRCLRNACVQCAKNQHVMRNLGLIATSIHLIKLLDRMPIKGEPLLTAFRCSLQFLGNIAAGNGDSQNSIWKCAFPDLFLTCLTYSDEKIVAYCCMVLFTCLNSEKVKELLDPRNLSVALHVIKVYKKQLESEWSFLIVTDYLLQCPELVKALYAKLSNQERVTFLELIMAKVSEKNSVTSEEMNVFMRHADFLAGCFQEKCEAVLKLTSAADAEDEEALVTIRLLDILCEMTSNNGQLEYLQTLPDLLQTAIDTLRLTHLAGKQAVNIFTTTHAMTWQEEISHPAVGFKAHLIRLIGNLCYKNKENQDKVYELDGIPLILDNCSIDDNNPFLNQWAVYAIRNLTEQNERNQQLIAQMEEKGLADNSALESMGLQIEKQDEKLILRSARKKPS", "length": 480 }, "evidence": [ { "id": "A0A480M0G4", "url": "https://omabrowser.org/oma/group/A0A480M0G4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O81325-1", "protein_name": "ARM repeat superfamily protein", "gene_name": "MEE50", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEASLPEEVLQPLLHASDLSYSLEDCLKFLLESSKTDSGRSDLASKSILPSILRLLQLLPYPSSRHYLNLSLKVLRNLCAGEVSNQNSFVDHDGSAIVSDLLDSAIADFETVRFGLQVLANVVLFGEKRQRDVWLRFYPERFLSIAKIRKRETFDPLCMILYTCVDGSSEIASELCSCQGLTIIAETLRTSSSVGSVEDYWLKLLVSRICVEDGYFLKLFSKLYEDAENEIFSSEQAFLVRMVSDIANERIGKVSIPKDTACSILGLFRQSVDVFDFVSGERSELPTGSTIVDVMGYSLVIIRDACAGGRLEELKEDNKDSGDTVELLLSSGLIELLLDLLSKLDPPTTIKKALNQSPSSSSSSLKPCPYRGFRRDIVSVIGNCAYRRKEVQDEIRERDGLFLMLQQCVTDDENPFLREWGLWCIRNLLEGNPENQEVVAELEIKGSVDVPQLREIGLRVEIDPKTARPKLVNDT", "length": 475 }, "evidence": [ { "id": "A0A480M0G4", "url": "https://omabrowser.org/oma/group/A0A480M0G4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P28658-1", "protein_name": "Ataxin-10", "gene_name": "Atxn10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAPRMPPSRLSGIMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSTHAVELACRDPSQVEHLASSLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLVLLFRELRVEQDSLLTAFRCGLQFLGNVASRNEESQSIVWVHAFPELFMSCLNHPDKKIVAYCSMILFTSLNAERMKDLEENLNIAINVIEAHQKHPASEWPFLIISDHFLKSPELVEAMYGKLSNQERITLLDIVIAKLVGEEQLTKDDISIFVRHAELIANSFMDQCRNVLKLTSEPHTEDKEALVTIRLLDVLCEMTSNTELLGYLQVFPGLMERVIDVLRVIHEVGKESTNIFSPSDSLKAEGDIEHMTEGFKSHLIRLIGNLCYKNKENQDKVNELDGIPLILDSSNIDDNNPFMMQWVVYAVRNLTEDNSQNQDVIAKMEEQGLADASLLKKMGFEIEKSGDKLILKSNNDIPPP", "length": 475 }, "evidence": [ { "id": "A0A480M0G4", "url": "https://omabrowser.org/oma/group/A0A480M0G4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ER24-1", "protein_name": "Ataxin-10", "gene_name": "Atxn10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAPRMPPSRLSGIMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSTQAVELACRDPSQVEHLASSLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLVLLFRELRVEQDSLLTAFRCGLQFLGNVASRNEDSQSIVWVHAFPELFMSCLNHPDKKIVAYCSMILFTSLNSERMKDLEENLNIAINVIEAHQKHPESEWPFLIITDHFLKSPELVEAMYGKLSNQERVTLLDIMIAKIVGDEQLTKDDISIFLRHAELIANSFVDQCRNVLKLTSEPQTEDKEALVTIRLLDVLCEMTSNTELLGYLQVFPGLMERVIDVLRVIHSVGKDSTNIFSPSDSLKAEGDIEHMTEGFKSHLIRLIGNLCYKNKENQDKVNELDGIPLILDSSNIDDNNPFMMQWVVYAVRNLTEDNSQNQDFIAKMEEQGLADASLLKKMGFEVEKSGDKLILKSNNDIPPP", "length": 475 }, "evidence": [ { "id": "A0A480M0G4", "url": "https://omabrowser.org/oma/group/A0A480M0G4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9UBB4-1", "protein_name": "Ataxin-10", "gene_name": "ATXN10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAPRPPPARLSGVMVPAPIQDLEALRALTALFKEQRNRETAPRTIFQRVLDILKKSSHAVELACRDPSQVENLASSLQLITECFRCLRNACIECSVNQNSIRNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEDSQSIVWVHAFPELFLSCLNHPDKKIVAYSSMILFTSLNHERMKELEENLNIAIDVIDAYQKHPESEWPFLIITDLFLKSPELVQAMFPKLNNQERVTLLDLMIAKITSDEPLTKDDIPVFLRHAELIASTFVDQCKTVLKLASEEPPDDEEALATIRLLDVLCEMTVNTELLGYLQVFPGLLERVIDLLRVIHVAGKETTNIFSNCGCVRAEGDISNVANGFKSHLIRLIGNLCYKNKDNQDKVNELDGIPLILDNCNISDSNPFLTQWVIYAIRNLTEDNSQNQDLIAKMEEQGLADASLLKKVGFEVEKKGEKLILKSTRDTPKP", "length": 475 }, "evidence": [ { "id": "A0A480M0G4", "url": "https://omabrowser.org/oma/group/A0A480M0G4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "A0A480M0G4", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4" } ], "pmid": "" }, { "name": "neuronal cell body", "id": "GO:0043025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043025", "evidence": [ { "database": "UniProtKB", "id": "A0A480M0G4", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A480M0G4", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "A0A480M0G4", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4" } ], "pmid": "" }, { "name": "midbody", "id": "GO:0030496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030496", "evidence": [ { "database": "UniProtKB", "id": "A0A480M0G4", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "A0A480M0G4", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A480M0G4", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "neuron projection development", "id": "GO:0031175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031175", "evidence": [ { "database": "UniProtKB", "id": "A0A480M0G4", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4" } ], "pmid": "" }, { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "A0A480M0G4", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4" } ], "pmid": "" }, { "name": "regulation of cytokinesis", "id": "GO:0032465", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032465", "evidence": [ { "database": "UniProtKB", "id": "A0A480M0G4", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 424, "end_pos": 426, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480M0G4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480M0G4" }, { "id": "PF09759", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09759" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ataxin-10", "eco_id": "ECO_0000259", "start_pos": 370, "end_pos": 460, "start_aa": "Phe", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 424, "end_pos": 426 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480SX75-1", "uniprot_ac": "A0A480SX75", "uniprot_id": "A0A480SX75_PIG", "mass": { "chemical_mass": 49073.0, "monoisotopic_mass": 49073.0 }, "refseq": { "ac": "XP_020926391", "name": "ADP-ribosylation factor-like protein 13B isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926391" }, "gene_names": [ { "name": "ARL13B", "type": "recommended", "evidence": [ { "id": "A0A480SX75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ] }, { "name": "ARL13B", "type": "synonym", "evidence": [ { "id": "XP_020926391", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926391" } ] } ], "protein_names": [ { "name": "ADP ribosylation factor like GTPase 13B", "type": "synonym", "evidence": [ { "id": "A0A480SX75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75/entry#names_and_taxonomy" } ] }, { "name": "ADP-ribosylation factor-like protein 13B isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020926391", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926391" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARL13B", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75", "locus": { "chromosome": "13", "start_pos": 165828059, "end_pos": 165910961, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027571", "url": "https://www.ensembl.org/id/ENSSSCG00000027571" } ] } } ], "crossref": [ { "id": "ENSSSCG00000027571", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027571", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04161", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04161", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100624385", "url": "https://www.ncbi.nlm.nih.gov/gene/100624385", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006689", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006689", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051995", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051995", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QKMEHEQ", "url": "https://omabrowser.org/oma/group/QKMEHEQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46090", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46090", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46090:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46090:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00025", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00025", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5624958", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5624958", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013406", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013406", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9646399", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9646399", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020926391", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926391", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480SX75-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480X2C7", "url": "https://www.uniprot.org/uniprotkb/A0A480X2C7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480X2C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480X2C7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RJ40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJ40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RJ40-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJ40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FQZ8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FQZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LE42", "url": "https://www.uniprot.org/uniprotkb/I3LE42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LE42-1", "url": "https://www.uniprot.org/uniprotkb/I3LE42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDALNERIQKDTTEQRALEEQEKRERAERVRKLREEREQREQEQAEHHGTSGLAELDPEPIIVNPFQPIASVIIENEKKLEKEKKRQNMEKDSDGSLLKHEMEHEEIETQSQISDSSQKNDEFGIVENYKEALTHQLENEDETDHRSSEPDNSKKKTKKLRMKRSHRVEPVNTDDSAPKSPTPPPPPPPVGWGTPKVTRLPKLEPLGETRHNDFYGKPLPPLAVRQRPNSDAHDVIS", "length": 430, "header": "tr|A0A480SX75-1|A0A480SX75_PIG Isoform 1 of ADP ribosylation factor like GTPase 13B OS=Sus scrofa OX=9823 GN=ARL13B PE=4 SV=1 CANONICAL=A0A480SX75-1" }, "isoforms": [ { "isoform_ac": "A0A480SX75-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75/entry#A0A480SX75-1", "sequence": { "sequence": "MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDALNERIQKDTTEQRALEEQEKRERAERVRKLREEREQREQEQAEHHGTSGLAELDPEPIIVNPFQPIASVIIENEKKLEKEKKRQNMEKDSDGSLLKHEMEHEEIETQSQISDSSQKNDEFGIVENYKEALTHQLENEDETDHRSSEPDNSKKKTKKLRMKRSHRVEPVNTDDSAPKSPTPPPPPPPVGWGTPKVTRLPKLEPLGETRHNDFYGKPLPPLAVRQRPNSDAHDVIS", "length": 430, "header": "tr|A0A480SX75-1|A0A480SX75_PIG Isoform 1 of ADP ribosylation factor like GTPase 13B OS=Sus scrofa OX=9823 GN=ARL13B PE=4 SV=1 CANONICAL=A0A480SX75-1" }, "locus": { "chromosome": "13", "start_pos": 165910646, "end_pos": 165830559, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024264.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024264.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027622.4", "url": "https://www.ensembl.org/id/ENSSSCP00000027622.4" } ] } }, { "isoform_ac": "A0A480X2C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75/entry#A0A480X2C7-1", "sequence": { "sequence": "MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDALNERIQKDTTEQRALEEQEKRERAERVRKLREEREQREQEQAEHHGTSGLAELDPEPIIVNPFQPIASVIIENEKKLEKEKKRQNMEKDSDGSLLKHEMEHEEIETQSQISDSSQKNDEFGIVENYKEALTHQLENEDETDHRSSEPDNSKKKTKKLRMKRSHRVEPVNTDDSAPKSPTPPPPPPPDFYGKPLPPLAVRQRPNSDAHDVIS", "length": 407, "header": "tr|A0A480X2C7-1|A0A480X2C7_PIG Computationally mapped isoform of ADP ribosylation factor like GTPase 13B OS=Sus scrofa OX=9823 GN=ARL13B PE=4 SV=1 CANONICAL=A0A480SX75-1" }, "locus": { "chromosome": "13", "start_pos": 165910646, "end_pos": 165830559, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076611.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076611.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063573.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063573.1" } ] } }, { "isoform_ac": "A0A5G2QDP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75/entry#A0A5G2QDP4-1", "sequence": { "sequence": "MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDALNERIQKDTTEQRALEEQEKRERAERVRKLREEREQREQEQAEHHGTSGLAELDPEPIIVNPFQPIASVIIENEKKLEKEKKRQNMEKDSDGSLLKHEMEHEEIETQSQISDSSQKNDEFGIVENYKEALTHQLENEDETDHRSSEPDNSKKKTKKLRMKRSHRVEPVNTDDSAPKSPTPPPPPPPVGWGTPKVTRLPKLEPLGETRHNDSFFFTSLLQQNFTFGSLSNPQPFLFHYALFFFI", "length": 439, "header": "tr|A0A5G2QDP4-1|A0A480SX75_PIG Computationally mapped isoform of ADP ribosylation factor like GTPase 13B OS=Sus scrofa OX=9823 GN=ARL13B PE=4 SV=1 CANONICAL=A0A480SX75-1" }, "locus": { "chromosome": "13", "start_pos": 165910646, "end_pos": 165841344, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066713.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066713.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062747.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062747.1" } ] } }, { "isoform_ac": "A0A5G2RJ40-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75/entry#A0A5G2RJ40-1", "sequence": { "sequence": "MFSLMANCCGWFKRWREPVRLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDALNERIQKDTTEQRALEEQEKRERAERVRKLREEREQREQEQAEHHGTSGLAELDPEPIIVNPFQPIASVIIENEKKLEKEKKRQNMEKDSDGSLLKHEMEHEEIETQSQISDSSQKNDEFGIVENYKEALTHQLENEDETDHRSSEPDNSKKKTKKLRMKRSHRVEPVNTDDSAPKSPTPPPPPPPVGWGTPKVTRLPKLEPLGETRHNDFYGKPLPPLAVRQRPNSDAHDVIS", "length": 323, "header": "tr|A0A5G2RJ40-1|A0A480SX75_PIG Computationally mapped isoform of ADP ribosylation factor like GTPase 13B OS=Sus scrofa OX=9823 GN=ARL13B PE=4 SV=1 CANONICAL=A0A480SX75-1" }, "locus": { "chromosome": "13", "start_pos": 165910646, "end_pos": 165830559, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082917.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082917.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071759.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071759.1" } ] } }, { "isoform_ac": "A0A8W4FQZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75/entry#A0A8W4FQZ8-1", "sequence": { "sequence": "MVISSWGLLLRREAAPQNEKKLEKEKKRQNMEKDSDGSLLKHEMEHEEIETQSQISDSSQKNDEFGIVENYKEALTHQLENEDETDHRSSEPDNSKKKTKKLRMKRSHRVEPVNTDDSAPKSPTPPPPPPPVGWGTPKVTRLPKLEPLGETRHNDFYGKPLPPLAVRQRPNSDAHDVIS", "length": 179, "header": "tr|A0A8W4FQZ8-1|A0A480SX75_PIG Computationally mapped isoform of ADP ribosylation factor like GTPase 13B OS=Sus scrofa OX=9823 GN=ARL13B PE=4 SV=1 CANONICAL=A0A480SX75-1" }, "locus": { "chromosome": "13", "start_pos": 165849440, "end_pos": 165830559, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102400.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102400.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080895.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080895.1" } ] } }, { "isoform_ac": "I3LE42-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75/entry#I3LE42-1", "sequence": { "sequence": "MFSLMANCCGWFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIARDFDALNERIQKDTTEQRALEEQEKRERAERVRKLREEREQREQEQAEHHGTSGLAELDPEPIIVNPFQPIASVIIENEKKLEKEKKRQNMEKDSDGSLLKHEMEHEEIETQSQISDSSQKNDEFGIVENYKEALTHQLENEDETDHRSSEPDNSKKKTKKLRMKRSHRVEPVNTDDSAPKSPTPPPPPPPVGWGTPKVTRLPKLEPLGETRHNVLLRFN", "length": 411, "header": "tr|I3LE42-1|A0A480SX75_PIG Computationally mapped isoform of ADP ribosylation factor like GTPase 13B OS=Sus scrofa OX=9823 GN=ARL13B PE=4 SV=3 CANONICAL=A0A480SX75-1" }, "locus": { "chromosome": "13", "start_pos": 165910646, "end_pos": 165836085, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027056.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027056.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022327.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022327.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 375, "start_aa": "Thr", "end_pos": 375, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr375", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 52, "start_aa": "Thr", "end_pos": 52, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr52", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LE42", "url": "https://www.uniprot.org/uniprotkb/I3LE42" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5624958", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5624958", "resource": "Reactome", "description": "ARL13B-mediated ciliary trafficking of INPP5E" }, { "id": "R-SSC-9013406", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013406", "resource": "Reactome", "description": "RHOQ GTPase cycle" }, { "id": "R-SSC-9646399", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9646399", "resource": "Reactome", "description": "Aggrephagy" } ], "orthologs": [ { "uniprot_canonical_ac": "F1NUR0-1", "protein_name": "ARF like GTPase 13B", "gene_name": "ARL13B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MFNLMANCCTWLKRWQEPVRKVTLIMVGLDNAGKTATVRGIQGESPEDVAPTVGFSKIDLKQGRFEVTIFDLGGGKRIRNIWRNYYAESYGVIFVVDSSDIERMEETKEAMTEVLNSPKISGKPVLVLANKQDREGALSEADVIETLSLEKLVNEHKCLCQIEPCSAVMGYGKKIDKSIKKGLYWLLHIIAKDFDALNERIQRDTTEQKAYEEQKKRERAERVRRIREEREREEGRSVHDEEDPEPGNSENPFQPIAAVISENEKQIEKEKKWQRLEAEKATVVSKSQTEQEQMDAQQLSTNSSQKTNDSRLETCNSTTAQHFQHEENEQQTSESLDSDNSKKKNKKTKLKRGHRVEPINGDDTVAPNPTPPPSLPPVGWGTPKLNRLRKLEPLGETHHTDFYGKPLPPLTVRQRPNSDTHDVIA", "length": 425 }, "evidence": [ { "id": "A0A480SX75", "url": "https://omabrowser.org/oma/group/A0A480SX75/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "M0RDU9-1", "protein_name": "ADP-ribosylation factor like GTPase 13B", "gene_name": "Arl13b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFNLMANCCNLFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEHPEDVAPTVGFSKIDLRQGKFEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEDRMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIAKDFDALSERIQKDTTEQRALEEQEKCERAERVRKLREERSFPPPPTNREQEQTELDGTSGLAEMDSGPVLTNPFQPIAAVIIENEKKQEKEKKKKTAEKDSDVGHPEHKGEQEGAESQNEAGGCLRNPHRDVVNSYKEALSQQLDNEDELDQRVSEPGDNSKKKTKKLRMKRSHRVEPVNTDESAPKSPTPPPPPPPVGWGTPKVTRLPKLEPLGETRHNDFYGKPLPPLAVRQRPNGDAQDMIS", "length": 436 }, "evidence": [ { "id": "A0A480SX75", "url": "https://omabrowser.org/oma/group/A0A480SX75/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3SXY8-1", "protein_name": "ADP-ribosylation factor-like protein 13B", "gene_name": "ARL13B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINLRQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIKKGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQAELDGTSGLAELDPEPTNPFQPIASVIIENEGKLEREKKNQKMEKDSDGCHLKHKMEHEQIETQGQVNHNGQKNNEFGLVENYKEALTQQLKNEDETDRPSLESANGKKKTKKLRMKRNHRVEPLNIDDCAPESPTPPPPPPPVGWGTPKVTRLPKLEPLGETHHNDFYRKPLPPLAVPQRPNSDAHDVIS", "length": 428 }, "evidence": [ { "id": "A0A480SX75", "url": "https://omabrowser.org/oma/group/A0A480SX75/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q640N2-1", "protein_name": "ADP-ribosylation factor-like protein 13B", "gene_name": "Arl13b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSLMANCCNLFKRWREPVRKVTLVMVGLDNAGKTATAKGIQGEHPEDVAPTVGFSKIDLRQGKFQVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIAKDFDALSERIQKDTTEQRALEEQEKRERAERVRKLREEREREQTELDGTSGLAEIDSGPVLANPFQPIAAVIIENEKKQEKEKKKQTVEKDSDVGLLEHKVEPEQAAPQSEADCCLQNPDERVVDSYREALSQQLDSEDEQDQRGSESGENSKKKTKKLRMKRSHRVEPVNTDESTPKSPTPPQPPPPVGWGTPKVTRLPKLEPLGETRHNDFYGKPLPPLAVRQRPNGDAQDTIS", "length": 427 }, "evidence": [ { "id": "A0A480SX75", "url": "https://omabrowser.org/oma/group/A0A480SX75/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" }, { "name": "GTP-dependent protein binding", "id": "GO:0030742", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030742", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 9, "go_terms": [ { "name": "motile cilium", "id": "GO:0031514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031514", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" }, { "name": "microtubule cytoskeleton", "id": "GO:0015630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015630", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" }, { "name": "intercellular bridge", "id": "GO:0045171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045171", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" }, { "name": "axoneme", "id": "GO:0005930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005930", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" }, { "name": "non-motile cilium", "id": "GO:0097730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097730", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" }, { "name": "ciliary membrane", "id": "GO:0060170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060170", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" }, { "name": "ciliary transition zone", "id": "GO:0035869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035869", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" }, { "name": "9+0 non-motile cilium", "id": "GO:0097731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097731", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" }, { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "kidney development", "id": "GO:0001822", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001822", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" }, { "name": "smoothened signaling pathway", "id": "GO:0007224", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007224", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" }, { "name": "neural tube patterning", "id": "GO:0021532", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0021532", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" }, { "name": "interneuron migration from the subpallium to the cortex", "id": "GO:0021830", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0021830", "evidence": [ { "database": "UniProtKB", "id": "A0A480SX75", "url": "https://www.uniprot.org/uniprotkb/A0A480SX75" } ], "pmid": "" }, { "name": 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"MAGKKNVLSSLAVYAEDSEPESDGEAGVETAGSAAEEKGGLVSEAYGEDDFSRLGGDEDGYEEEEDENSKQSEDDDSETEKPEADDPKDNPEAEKRDPQELVASFSERVRNMSPDEIKIPPEPPGRCSNHLQDKIQKLYERKIKEGMDMNYIIQRKKEFRNPSIYEKLIQFCAIDELGTNYPKDMFDPHGWSEDSYYEALAKAQKIEMDKLEKAKKERTKIEFVTGTKKGTTTNATATTTTTASTAVADAQKRKSKWDSAIPVTTIAQPTILTTTATLPAVVTVTTSASGSKTTVISAVGTIVKKAKQ", "length": 308, "header": "tr|A0A481C7C1-1|A0A481C7C1_PIG Isoform 1 of SAP30 binding protein OS=Sus scrofa OX=9823 GN=SAP30BP PE=4 SV=1 CANONICAL=A0A481C7C1-1" }, "isoforms": [ { "isoform_ac": "A0A481C7C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A481C7C1/entry#A0A481C7C1-1", "sequence": { "sequence": "MAGKKNVLSSLAVYAEDSEPESDGEAGVETAGSAAEEKGGLVSEAYGEDDFSRLGGDEDGYEEEEDENSKQSEDDDSETEKPEADDPKDNPEAEKRDPQELVASFSERVRNMSPDEIKIPPEPPGRCSNHLQDKIQKLYERKIKEGMDMNYIIQRKKEFRNPSIYEKLIQFCAIDELGTNYPKDMFDPHGWSEDSYYEALAKAQKIEMDKLEKAKKERTKIEFVTGTKKGTTTNATATTTTTASTAVADAQKRKSKWDSAIPVTTIAQPTILTTTATLPAVVTVTTSASGSKTTVISAVGTIVKKAKQ", "length": 308, "header": "tr|A0A481C7C1-1|A0A481C7C1_PIG Isoform 1 of SAP30 binding protein OS=Sus scrofa OX=9823 GN=SAP30BP PE=4 SV=1 CANONICAL=A0A481C7C1-1" }, "locus": { "chromosome": "12", "start_pos": 5732166, "end_pos": 5696687, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070353.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070353.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067746.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067746.1" } ] } }, { "isoform_ac": "A0A5G2QMM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A481C7C1/entry#A0A5G2QMM9-1", "sequence": { "sequence": "MAGKKNVLSSLAVYAEDSEPESDGEAGVETAGSAAEEKGGLVSEAYGEDDFSRLGGDEDGYEEEEDENSKQSEDDDSETEKPEADDPKDNPEAEKRDPQELVASFSERVRNMSPDEIKIPPEPPGRCSNHLQDKIQKLYERKIKEGMDMNYIIQRKKEFRNPSIYEKLIQFCAIDELGTNYPKDMFDPHGWSEDSYYEALVATISSKKPRFRLLLVTEKAVTLAKAQKIEMDKLEKAKKERTKIEFVTGTKKGTTTNATATTTTTASTAVADAQKRKSKWDSAIPVTTIAQPTILTTTATLPAVVTVTTSASGSKTTVISAVGTIVKKAKQ", "length": 331, "header": "tr|A0A5G2QMM9-1|A0A481C7C1_PIG Computationally mapped isoform of SAP30 binding protein OS=Sus scrofa OX=9823 GN=SAP30BP PE=4 SV=1 CANONICAL=A0A481C7C1-1" }, "locus": { "chromosome": "12", "start_pos": 5732166, "end_pos": 5696687, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081553.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081553.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066127.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066127.1" } ] } }, { "isoform_ac": "I3L780-1", "url": "https://www.uniprot.org/uniprotkb/A0A481C7C1/entry#I3L780-1", "sequence": { "sequence": "MAGKKNVLSSLAVYAEDSEPESDGEAGVETAGSAAEEKGGLVSEAYGEDDFSRLGGDEDGYEEEEDENSKQSDNPEAEKRDPQELVASFSERVRNMSPDEIKIPPEPPGRCSNHLQDKIQKLYERKIKEGMDMNYIIQRKKEFRNPSIYEKLIQFCAIDELGTNYPKDMFDPHGWSEDSYYEALAKAQKIEMDKLEKAKKERTKIEFVTGTKKGTTTNATATTTTTASTAVADAQKRKSKWDSAIPVTTIAQPTILTTTATLPAVVTVTTSASGSKTTVISAVGTIVKKAKQ", "length": 292, "header": "tr|I3L780-1|A0A481C7C1_PIG Computationally mapped isoform of SAP30 binding protein OS=Sus scrofa OX=9823 GN=SAP30BP PE=4 SV=2 CANONICAL=A0A481C7C1-1" }, "locus": { "chromosome": "12", "start_pos": 5732166, "end_pos": 5696687, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023832.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023832.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019884.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019884.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L780", "url": "https://www.uniprot.org/uniprotkb/I3L780" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523815", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523815", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LZK2-1", "protein_name": "SAP30 binding protein", "gene_name": "SAP30BP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGKKNVLSSLAVYDEDSEAESDGEAGVETAGSAADEKGGLVSKAYGDDDFSRLAGDEDGYEEEEDENSKPSEDDDSETEKPEADDPKDNPEVEKRDPQELVASFSERVRNMSPDEIKIPPEPPGRCSNHLQDKIQKLYERKIKEGMDMNYIIQRKKEFRNPSIYEKLIQFCAIDELGTNYPKDMFDPHGWSEDSYYEALAKAQKIEMDKLEKAKKERTKIEFVTGTKKGTTTNATATTTTTASTAVADAQKRKSKWDSAIPVTTIAQPTILTTTATLPAVVTVTTSASGSKTTVISAVGTIVKKAKQ", "length": 308 }, "evidence": [ { "id": "A0A481C7C1", "url": "https://omabrowser.org/oma/group/A0A481C7C1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8I5ZZ81-1", "protein_name": "SAP30 binding protein", "gene_name": "Sap30bp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGKKNVLSSLAVYAEYSDPESDGETGVDAVGSAAEEKGGLVSDAYGEDDFSRPGGDEDGYEEEEDENSKQSEDDDSETEKPEADDPKVFESPLFSTASFSEKVRNMSPDEIKIPPEPPGRCSNHLQDKIQKLYERKIKEGMDMNYIIQRKKEFRNPSSCALWCRSDYSLTSSLQDMFDPHGWSEDSYYEALAQEMDTCLCNGLIVLSPLQIEFVTGTKKGTTTNATATTTSTASTAVADAQKRKSKWDSAIPVTTIAQPTILTTTATLPAVVTVTTSASGSKTTVISAVGTIVKKAKQ", "length": 299 }, "evidence": [ { "id": "A0A481C7C1", "url": "https://omabrowser.org/oma/group/A0A481C7C1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V1AFG1-1", "protein_name": "SAP30 binding protein", "gene_name": "SAP30BP", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSSLSVLSAWQCASINVSPVDQRPFKAEGGGRRCYGDCSDVISARRKRSRLWQKMAAAKRSVLSSLAVYAEDSDPESDSETGTAGSDGGTATGEKGGLVSVGYGEDDFSRLDGDEEGYEEDDDENSRQSEDDDSETEKPEAGDLKEFSELEKRDPQELVASFSERVRNMSPDEIRIPPEPPGRCSNHLQDKIQKLYERKIKEGMDMNYIIQRKKEFRNPSIYEKLIQFCSIDELGTNYPKDMFDPHGWSEDSYYEALAKAQKIEMDKLEKAKKERTKIEFVTGTKKGTTTSAASTTTTTASTTVGDAQKRKSKWDSAIPVTTIAQPTILTTTATLPGVVTVTTSASGSKTTVISAVGTIVKKAKQ", "length": 365 }, "evidence": [ { "id": "A0A481C7C1", "url": "https://omabrowser.org/oma/group/A0A481C7C1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1QJR8-1", "protein_name": "SAP30-binding protein", "gene_name": "sap30bp", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MASSKKSALISSLAAYGDDSEQDSDPDTDDQESRGLVSASYGEDEVSRVEEAYEKPSENEDSDEDSTRNSDEEESDSGRIQDDVKEVQEVEVKDPNELVAQFSEKVRNMSPDEIRIPPEPPGRCSSHLQEKIFKLYERKLQGDFDTNSHIQKKKEFRNPSIYEKLIQFCDIDELGTNYPKDMFDPHGWSEDSYYEALAKAQKVEMDKLEKAKKEKTKIEFVTGTKKGTTTNAAALATNTTATSSTDAQKRKSKWDSAVPVTLAQPALLTTTATLPGVVSVTTTASGTKTTVISAVGTIHKKAKQ", "length": 304 }, "evidence": [ { "id": "A0A481C7C1", "url": "https://omabrowser.org/oma/group/A0A481C7C1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9UHR5-1", "protein_name": "SAP30-binding protein", "gene_name": "SAP30BP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGKKNVLSSLAVYAEDSEPESDGEAGIEAVGSAAEEKGGLVSDAYGEDDFSRLGGDEDGYEEEEDENSRQSEDDDSETEKPEADDPKDNTEAEKRDPQELVASFSERVRNMSPDEIKIPPEPPGRCSNHLQDKIQKLYERKIKEGMDMNYIIQRKKEFRNPSIYEKLIQFCAIDELGTNYPKDMFDPHGWSEDSYYEALAKAQKIEMDKLEKAKKERTKIEFVTGTKKGTTTNATSTTTTTASTAVADAQKRKSKWDSAIPVTTIAQPTILTTTATLPAVVTVTTSASGSKTTVISAVGTIVKKAKQ", "length": 308 }, "evidence": [ { "id": "A0A481C7C1", "url": "https://omabrowser.org/oma/group/A0A481C7C1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A481C7C1", "url": "https://www.uniprot.org/uniprotkb/A0A481C7C1" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A481C7C1", "url": "https://www.uniprot.org/uniprotkb/A0A481C7C1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A481C7C1", "url": "https://www.uniprot.org/uniprotkb/A0A481C7C1" } ], "pmid": "" }, { "name": "response to virus", "id": "GO:0009615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009615", "evidence": [ { "database": "UniProtKB", "id": "A0A481C7C1", "url": "https://www.uniprot.org/uniprotkb/A0A481C7C1" } ], "pmid": "" }, { "name": "regulation of mRNA splicing, via spliceosome", "id": "GO:0048024", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048024", "evidence": [ { "database": "UniProtKB", "id": "A0A481C7C1", "url": "https://www.uniprot.org/uniprotkb/A0A481C7C1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cyclin-dependent protein serine/threonine kinase regulator activity", "id": "GO:0016538", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016538", "evidence": [ { "database": "UniProtKB", "id": "A0A481C7C1", "url": "https://www.uniprot.org/uniprotkb/A0A481C7C1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 111, "end_pos": 113 }, { "start_pos": 234, "end_pos": 236 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A481C655-1", "uniprot_ac": "A0A481C655", "uniprot_id": "A0A481C655_PIG", "mass": { "chemical_mass": 63970.0, "monoisotopic_mass": 63970.0 }, "refseq": { "ac": "XP_020947445", "name": "zinc finger protein Eos isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947445" }, "gene_names": [ { "name": "IKZF4", "type": "recommended", "evidence": [ { "id": "A0A481C655", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ] }, { "name": "IKZF4", "type": "synonym", "evidence": [ { "id": "XP_020947445", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947445" } ] } ], "protein_names": [ { "name": "IKAROS family zinc finger 4", "type": "synonym", "evidence": [ { "id": "A0A481C655", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481C655/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein Eos isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020947445", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947445" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IKZF4", "url": "https://www.uniprot.org/uniprotkb/A0A481C655", "locus": { "chromosome": "5", "start_pos": 21427647, "end_pos": 21400347, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000031139", "url": "https://www.ensembl.org/id/ENSSSCG00000031139" } ] } } ], "crossref": [ { "id": "ENSSSCG00000031139", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031139", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100625585", "url": "https://www.ncbi.nlm.nih.gov/gene/100625585", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100625585", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625585", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LCGMVCI", "url": "https://omabrowser.org/oma/group/LCGMVCI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QMY0", "url": "https://www.orthodb.org/?gene=A0A5G2QMY0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24404", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24404", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24404:SF28", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24404:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020947445", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947445", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481C655-1", "url": "https://www.uniprot.org/uniprotkb/A0A481C655-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMY0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRH7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHTPPALPRRFQGGGRIRTPGSHRQGKDNLERDPSGGCVPDFLPQAQDSNHFIMESLFCESSGDSSLEKEFLGAPVGPSVSTPNSQHSSPSRSLSANSIKVEMYSDEESSRLLGPDERLLEKDDSVIVEDSLSEPLGYCDGSGPEPHSPGGIRLPNGKLKCDVCGMVCIGPNVLMVHKRSHTGERPFHCNQCGASFTQKGNLLRHIKLHSGEKPFKCPFCNYACRRRDALTGHLRTHSVSSPTVGKPYKCNYCGRSYKQQSTLEEHKERCHNYLQSLSTEAQALAGQSGDEIRDLEMVPDSMLHSSSERPTFIDRLANSLTKRKRSTPQKFVGEKQMRFSLSDLPYDVNSGGYEKDVELVAHHGLEPGFGGSLAFVGAEHLRPLRLPPTNCISELTPVISSVYTQMQPLPGRLELPGSREAGEGPEDLADGGPLLYRARGPLTDPGASPSNGCQDSTDTESNHEDRVGGVVSLPQGPPPQPPPTLVVGRPSPAYAKEDPKPQEGLLRGTPGPSKEVLRVVGESGEPVKAFKCEHCRILFLDHVMFTIHMGCHGFRDPFECNICGYHSQDRYEFSSHIVRGEHKVG", "length": 585, "header": "tr|A0A481C655-1|A0A481C655_PIG Isoform 1 of IKAROS family zinc finger 4 OS=Sus scrofa OX=9823 GN=IKZF4 PE=3 SV=1 CANONICAL=A0A481C655-1" }, "isoforms": [ { "isoform_ac": "A0A481C655-1", "url": "https://www.uniprot.org/uniprotkb/A0A481C655/entry#A0A481C655-1", "sequence": { "sequence": "MHTPPALPRRFQGGGRIRTPGSHRQGKDNLERDPSGGCVPDFLPQAQDSNHFIMESLFCESSGDSSLEKEFLGAPVGPSVSTPNSQHSSPSRSLSANSIKVEMYSDEESSRLLGPDERLLEKDDSVIVEDSLSEPLGYCDGSGPEPHSPGGIRLPNGKLKCDVCGMVCIGPNVLMVHKRSHTGERPFHCNQCGASFTQKGNLLRHIKLHSGEKPFKCPFCNYACRRRDALTGHLRTHSVSSPTVGKPYKCNYCGRSYKQQSTLEEHKERCHNYLQSLSTEAQALAGQSGDEIRDLEMVPDSMLHSSSERPTFIDRLANSLTKRKRSTPQKFVGEKQMRFSLSDLPYDVNSGGYEKDVELVAHHGLEPGFGGSLAFVGAEHLRPLRLPPTNCISELTPVISSVYTQMQPLPGRLELPGSREAGEGPEDLADGGPLLYRARGPLTDPGASPSNGCQDSTDTESNHEDRVGGVVSLPQGPPPQPPPTLVVGRPSPAYAKEDPKPQEGLLRGTPGPSKEVLRVVGESGEPVKAFKCEHCRILFLDHVMFTIHMGCHGFRDPFECNICGYHSQDRYEFSSHIVRGEHKVG", "length": 585, "header": "tr|A0A481C655-1|A0A481C655_PIG Isoform 1 of IKAROS family zinc finger 4 OS=Sus scrofa OX=9823 GN=IKZF4 PE=3 SV=1 CANONICAL=A0A481C655-1" }, "locus": { "chromosome": "5", "start_pos": 21424603, "end_pos": 21413714, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069639.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069639.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067818.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067818.1" } ] } }, { "isoform_ac": "A0A5G2QMY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A481C655/entry#A0A5G2QMY0-1", "sequence": { "sequence": "MTSEALASPAGRGLGLPWGPPSSPPRPRGPIHLSLSLLPLSGICCAVPLCLLGTRATASVSPSLCTPPTPSPSLAWERDAAAQRPPPDTLTHSLQPPPQAHPSVRCSCSLSPSLPLPLSPSLSLSLFLPLSLALSLSVSLSLSLSLSLSHTHTHTHTQIHTHTHPGLSSSCWLQPWAPAHRAAAAACEMTAVPLTSRNPRFLEGSGDSSLEKEFLGAPVGPSVSTPNSQHSSPSRSLSANSIKVEMYSDEESSRLLGPDERLLEKDDSVIVEDSLSEPLGYCDGSGPEPHSPGGIRLPNGKLKCDVCGMVCIGPNVLMVHKRSHTGERPFHCNQCGASFTQKGNLLRHIKLHSGEKPFKCPFCNYACRRRDALTGHLRTHSVSSPTVGKPYKCNYCGRSYKQQSTLEEHKERCHNYLQSLSTEAQALAGQSGDEIRDLEMVPDSMLHSSSERPTFIDRLANSLTKRKRSTPQKFVGEKQMRFSLSDLPYDVNSGGYEKDVELVAHHGLEPGFGGSLAFVGAEHLRPLRLPPTNCISELTPVISSVYTQMQPLPGRLELPGSREAGEGPEDLADGGPLLYRARGPLTDPGASPSNGCQDSTDTESNHEDRVGGVVSLPQGPPPQPPPTLVVGRPSPAYAKEDPKPQEGLLRGTPGPSKEVLRVVGESGEPVKAFKCEHCRILFLDHVMFTIHMGCHGFRDPFECNICGYHSQDRYEFSSHIVRGEHKVG", "length": 728, "header": "tr|A0A5G2QMY0-1|A0A481C655_PIG Computationally mapped isoform of IKAROS family zinc finger 4 OS=Sus scrofa OX=9823 GN=IKZF4 PE=3 SV=2 CANONICAL=A0A481C655-1" }, "locus": { "chromosome": "5", "start_pos": 21424603, "end_pos": 21413061, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077908.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077908.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066019.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066019.2" } ] } }, { "isoform_ac": "A0A5G2QRH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A481C655/entry#A0A5G2QRH7-1", "sequence": { "sequence": "MDIEDSNGRSYMSGSGDSSLEKEFLGAPVGPSVSTPNSQHSSPSRSLSANSIKVEMYSDEESSRLLGPDERLLEKDDSVIVEDSLSEPLGYCDGSGPEPHSPGGIRLPNGKLKCDVCGMVCIGPNVLMVHKRSHTGERPFHCNQCGASFTQKGNLLRHIKLHSGEKPFKCPFCNYACRRRDALTGHLRTHSVSSPTVGKPYKCNYCGRSYKQQSTLEEHKERCHNYLQSLSTEAQALAGQSGDEIRDLEMVPDSMLHSSSERPTFIDRLANSLTKRKRSTPQKFVGEKQMRFSLSDLPYDVNSGGYEKDVELVAHHGLEPGFGGSLAFVGAEHLRPLRLPPTNCISELTPVISSVYTQMQPLPGRLELPGSREAGEGPEDLADGGPLLYRARGPLTDPGASPSNGCQDSTDTESNHEDRVGGVVSLPQGPPPQPPPTLVVGRPSPAYAKEDPKPQEGLLRGTPGPSKEVLRVVGESGEPVKAFKCEHCRILFLDHVMFTIHMGCHGFRDPFECNICGYHSQDRYEFSSHIVRGEHKVG", "length": 538, "header": "tr|A0A5G2QRH7-1|A0A481C655_PIG Computationally mapped isoform of IKAROS family zinc finger 4 OS=Sus scrofa OX=9823 GN=IKZF4 PE=3 SV=1 CANONICAL=A0A481C655-1" }, "locus": { "chromosome": "5", "start_pos": 21424603, "end_pos": 21410402, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078284.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078284.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064641.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064641.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 243, "start_aa": "Thr", "end_pos": 243, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr243", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRH7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625585", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625585", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AS15-1", "protein_name": "IKAROS family zinc finger 4", "gene_name": "Ikzf4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MHTPPALPRRFQGGGRVRTPGSHRQGKDNLERELSGGCAPDFLPQAQDSNHFIMESLFCESSGDSSLEKEFLGAPVGPSVSTPNSQHSSPSRSLSANSIKVEMYSDEESSRLLGPDERLLDKDDSVIVEDSLSEPLGYCDGSGPEPHSPGGIRLPNGKLKCDVCGMVCIGPNVLMVHKRSHTGERPFHCNQCGASFTQKGNLLRHIKLHSGEKPFKCPFCNYACRRRDALTGHLRTHSVSSPTVGKPYKCNYCGRSYKQQSTLEEHKERCHNYLQSLSTDAQTLAGQPGDEIRDLEMVPDSMLHPSTERPTFIDRLANSLTKRKRSTPQKFVGEKQMRFSLSDLPYDVNPSGGYEKDVELVAHHGLEPGFGGSLAFVGTEHLRPLRLPPTNCISELTPVISSVYTQMQPLPSRLELPGSREAGEGPEDLGDGGPLLYRARGSLTDPGASPSNGCQDSTDTESNHEDRIGGVVSLPQGPPPQPPPTIVVGRHSPAYAKEDPKPQEGLLRGTPGPSKEVLRVVGESGEPVKAFKCEHCRILFLDHVMFTIHMGCHGFRDPFECNICGYHSQDRYEFSSHIVRGEHKVG", "length": 586 }, "evidence": [ { "id": "A0A481C655", "url": "https://omabrowser.org/oma/group/A0A481C655/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M3AMX3-1", "protein_name": "Zinc finger protein Eos isoform X1", "gene_name": "ikzf4", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMNADDCNGRSYMSGSGDSSTEREFFAGLRGPTVSTPNSQQSSPSRSLSANSIKVELYSDEEAGGAPLVERRVGEKDEGWKDEKGDLAEDGGVEMVGGTRGQAGSGCGEMASSEPASPGPIRLPNGKLKCDICGMICIGPNVLMVHKRSHTVLVSVGERPFQCNQCGASFTQKGNLLRHIKLHSGEKPFKCPFCNYACRRRDALTGHLRTHSVSSPTVGKPYKCSYCGRSYKQQSTLEEHRERCHSYLQSLDHQPAHNTQPTHGEESHNVEMISEPLIQSSSEKMTFIDRLANSITKRKRSTPQKFLGEKHMRLNISEAPYDLDPNPDKEGDLLLSHPEGDPAALAEMGGRFMRGPRGGSNDVDPSRSLRMPPHSACLSEFTPVISSVYPHITPLGQRLNCAGGISMGLAGREAGEGHEDLPSTRSRAASPSNGYQDSTDTESMAEEQCVITSAPPGNLNHRGRDRHSPSHAKEMDIEGDREKGVPGGLPTKASPRSPLTREAMQVVDGEGRPVRSFRCEHCRIFFLDHVMFTIHMGCHGFRQPFECNICGHRSQDRYEFSSHIVRGEHQVG", "length": 572 }, "evidence": [ { "id": "A0A481C655", "url": "https://omabrowser.org/oma/group/A0A481C655/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1N670-1", "protein_name": "IKAROS family zinc finger 4", "gene_name": "IKZF4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MHTPPALARRFQGGGRARTPGSQRQGKDNLERDPSGGCVPDFLPQAQDSNHFIMESLFCESSGDSSLEKEFLGAPVGPSVSTPNSQHSSPSRSLSANSIKVEMYSDEESSRLLGPDERLLEKDDSVIVEDSLSEPLGYCDGSGPEPHSPGGIRLPNGKLKCDVCGMVCIGPNVLMVHKRSHTGERPFHCNQCGASFTQKGNLLRHIKLHSGEKPFKCPFCNYACRRRDALTGHLRTHSVSSPTVGKPYKCNYCGRSYKQQSTLEEHKERCHNYLQSLSTEAQALAGQSGDEIRDLEMVPDSMLHSSSERPTFIDRLANSLTKRKRSTPQKFVGEKQMRFSLSDLPYDVNSGGYEKDVELVAHHGLEPGFGGSLAFVGAEHLRPLRLPPTNCISELTPVISSVYTQMQPLPGRLELPGSREAGEGPEDLADGGPLLYRARGPLTDPGASPSNGCQDSTDTESNHEDRVGGVVSLPQGPPPQPPPAVVVGRPSPAYAKEDPKPQEGLLRGTPGPSKEVLRVVGESGEPVKAFKCEHCRILFLDHVMFTIHMGCHGFRDPFECNICGYHSQDRYEFSSHIVRGEHKVG", "length": 585 }, "evidence": [ { "id": "A0A481C655", "url": "https://omabrowser.org/oma/group/A0A481C655/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8C208-1", "protein_name": "Zinc finger protein Eos", "gene_name": "Ikzf4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHTPPALPRRFQGGGRVRTPGSHRQGKDNLERELSGGCAPDFLPQAQDSNHFIMESLFCESSGDSSLEKEFLGAPVGPSVSTPNSQHSSPSRSLSANSIKVEMYSDEESSRLLGPDERLLDKDDSVIVEDSLSEPLGYCDGSGPEPHSPGGIRLPNGKLKCDVCGMVCIGPNVLMVHKRSHTGERPFHCNQCGASFTQKGNLLRHIKLHSGEKPFKCPFCNYACRRRDALTGHLRTHSVSSPTVGKPYKCNYCGRSYKQQSTLEEHKERCHNYLQSLSTDAQALTGQPGDEIRDLEMVPDSMLHPSTERPTFIDRLANSLTKRKRSTPQKFVGEKQMRFSLSDLPYDVNASGGYEKDVELVAHHGLEPGFGGSLAFVGTEHLRPLRLPPTNCISELTPVISSVYTQMQPIPSRLELPGSREAGEGPEDLGDGGPLLYRARGSLTDPGASPSNGCQDSTDTESNHEDRIGGVVSLPQGPPPQPPPTIVVGRHSPAYAKEDPKPQEGLLRGTPGPSKEVLRVVGESGEPVKAFKCEHCRILFLDHVMFTIHMGCHGFRDPFECNICGYHSQDRYEFSSHIVRGEHKVG", "length": 586 }, "evidence": [ { "id": "A0A481C655", "url": "https://omabrowser.org/oma/group/A0A481C655/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H2S9-1", "protein_name": "Zinc finger protein Eos", "gene_name": "IKZF4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MHTPPALPRRFQGGGRVRTPGSHRQGKDNLERDPSGGCVPDFLPQAQDSNHFIMESLFCESSGDSSLEKEFLGAPVGPSVSTPNSQHSSPSRSLSANSIKVEMYSDEESSRLLGPDERLLEKDDSVIVEDSLSEPLGYCDGSGPEPHSPGGIRLPNGKLKCDVCGMVCIGPNVLMVHKRSHTGERPFHCNQCGASFTQKGNLLRHIKLHSGEKPFKCPFCNYACRRRDALTGHLRTHSVSSPTVGKPYKCNYCGRSYKQQSTLEEHKERCHNYLQSLSTEAQALAGQPGDEIRDLEMVPDSMLHSSSERPTFIDRLANSLTKRKRSTPQKFVGEKQMRFSLSDLPYDVNSGGYEKDVELVAHHSLEPGFGSSLAFVGAEHLRPLRLPPTNCISELTPVISSVYTQMQPLPGRLELPGSREAGEGPEDLADGGPLLYRPRGPLTDPGASPSNGCQDSTDTESNHEDRVAGVVSLPQGPPPQPPPTIVVGRHSPAYAKEDPKPQEGLLRGTPGPSKEVLRVVGESGEPVKAFKCEHCRILFLDHVMFTIHMGCHGFRDPFECNICGYHSQDRYEFSSHIVRGEHKVG", "length": 585 }, "evidence": [ { "id": "A0A481C655", "url": "https://omabrowser.org/oma/group/A0A481C655/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ], "pmid": "" }, { "name": "protein homooligomerization", "id": "GO:0051260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051260", "evidence": [ { "database": "UniProtKB", "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ], "pmid": "" }, { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ], "pmid": "" }, { "name": "bHLH transcription factor binding", "id": "GO:0043425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043425", "evidence": [ { "database": "UniProtKB", "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A481C655", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A481C655", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481C655" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } 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"url": "https://www.ebi.ac.uk/interpro/entry/IPR020084", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020476", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020476", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511529", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511529", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A480XE17", "url": "https://www.orthodb.org/?gene=A0A480XE17", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11839", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11839", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11839:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11839:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00293", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00293", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2393930", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2393930", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003482884", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482884", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "10412", "url": "https://www.rhea-db.org/rhea/10412", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "32063", "url": "https://www.rhea-db.org/rhea/32063", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "50248", "url": "https://www.rhea-db.org/rhea/50248", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "82603", "url": "https://www.rhea-db.org/rhea/82603", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480XE17-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP36-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP36-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQQEPAEPSPNSKQAVISEELISEGKWVKLEKTTYRDPTGKTRTWETVKRTTRKGQSADGVSIIPVLQRTLHYECVVLVKQFRPPMGGYCLEFPAGLIDENESPEAAALRELEEETGYKGDVAECSPAVCMDPGLSNCTTHVVTVMINGDDAENVRPKPKPGDGEFVEVISLPKNDLLSRLHALVADEHLTVDARVYSYALALKHANTKPFEVPFLKF", "length": 219, "header": "tr|A0A480XE17-1|A0A480XE17_PIG Isoform 1 of ADP-sugar pyrophosphatase OS=Sus scrofa OX=9823 GN=NUDT5 PE=1 SV=1 CANONICAL=A0A480XE17-1" }, "isoforms": [ { "isoform_ac": "A0A480XE17-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17/entry#A0A480XE17-1", "sequence": { "sequence": "MDQQEPAEPSPNSKQAVISEELISEGKWVKLEKTTYRDPTGKTRTWETVKRTTRKGQSADGVSIIPVLQRTLHYECVVLVKQFRPPMGGYCLEFPAGLIDENESPEAAALRELEEETGYKGDVAECSPAVCMDPGLSNCTTHVVTVMINGDDAENVRPKPKPGDGEFVEVISLPKNDLLSRLHALVADEHLTVDARVYSYALALKHANTKPFEVPFLKF", "length": 219, "header": "tr|A0A480XE17-1|A0A480XE17_PIG Isoform 1 of ADP-sugar pyrophosphatase OS=Sus scrofa OX=9823 GN=NUDT5 PE=1 SV=1 CANONICAL=A0A480XE17-1" }, "locus": { "chromosome": "10", "start_pos": 59787208, "end_pos": 59776074, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012162.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012162.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011852.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011852.4" } ] } }, { "isoform_ac": "A0A5G2QP36-1", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17/entry#A0A5G2QP36-1", "sequence": { "sequence": "GCCCRVARRAGGGEDLLTRSSGHLSGSLRDGGSSRGTSVFWHSHQHCSVISSPVTTLLGLPPSPPVCLAWDLQCSSPHCRLHSLGLTPRGSRENGAKRTWETVKRTTRKGQSADGVSIIPVLQRTLHYECVVLVKQFRPPMGGYCLEFPAGLIDENESPEAAALRELEEETGYKGDVAECSPAVCMDPGLSNCTTHVVTVMINGDDAENVRPKPKPEFVEVISLPKNDLLSRLHALVADEHLTVDARVYSYALALKHANTKPFEVPFLKF", "length": 270, "header": "tr|A0A5G2QP36-1|A0A480XE17_PIG Computationally mapped isoform of ADP-sugar pyrophosphatase OS=Sus scrofa OX=9823 GN=NUDT5 PE=1 SV=1 CANONICAL=A0A480XE17-1" }, "locus": { "chromosome": "10", "start_pos": 59787208, "end_pos": 59778550, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082346.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082346.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060047.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060047.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP36" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511529", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511529", "resource": "KEGG Pathway" }, { "id": "R-SSC-2393930", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2393930", "resource": "Reactome", "description": "Phosphate bond hydrolysis by NUDT proteins" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 8, "go_terms": [ { "name": "8-oxo-dGDP phosphatase activity", "id": "GO:0044715", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044715", "evidence": [ { "database": "UniProtKB", "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" } ], "pmid": "" }, { "name": "ADP-sugar diphosphatase activity", "id": "GO:0019144", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019144", "evidence": [ { "database": "UniProtKB", "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" } ], "pmid": "" }, { "name": "magnesium ion binding", "id": "GO:0000287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000287", "evidence": [ { "database": "UniProtKB", "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" } ], "pmid": "" }, { "name": "ADP-ribose diphosphatase activity", "id": "GO:0047631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047631", "evidence": [ { "database": "UniProtKB", "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" } ], "pmid": "" }, { "name": "snoRNA binding", "id": "GO:0030515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030515", "evidence": [ { "database": "UniProtKB", "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" } ], "pmid": "" }, { "name": "nucleotidyltransferase activity", "id": "GO:0016779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016779", "evidence": [ { "database": "UniProtKB", "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" } ], "pmid": "" }, { "name": "nucleoside diphosphate phosphatase activity", "id": "GO:0017110", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017110", "evidence": [ { "database": "UniProtKB", "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" } ], "pmid": "" }, { "name": "ATP generation from poly-ADP-D-ribose", "id": "GO:1990966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990966", "evidence": [ { "database": "UniProtKB", "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" } ], "pmid": "" }, { "name": "ribonucleoside diphosphate catabolic process", "id": "GO:0009191", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009191", "evidence": [ { "database": "UniProtKB", "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" } ], "pmid": "" }, { "name": "D-ribose catabolic process", "id": "GO:0019303", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019303", "evidence": [ { "database": "UniProtKB", "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" } ], "pmid": "" }, { "name": "ribose phosphate metabolic process", "id": "GO:0019693", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019693", "evidence": [ { "database": "UniProtKB", "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" } ], "pmid": "" }, { "name": "nucleoside phosphate metabolic process", "id": "GO:0006753", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006753", "evidence": [ { "database": "UniProtKB", "id": "A0A480XE17", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 138, "end_pos": 140, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "10412", "name": "", "equation": "ADP-D-ribose + H2O = D-ribose 5-phosphate + AMP + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "10412", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/10412" } ] }, { "id": "32063", "name": "", "equation": "8-oxo-dGDP + H2O = 8-oxo-dGMP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "32063", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/32063" } ] }, { "id": "50248", "name": "", "equation": "D-ribose 5-phosphate + ATP + H(+) = ADP-D-ribose + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "50248", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/50248" } ] }, { "id": "82603", "name": "", "equation": "a 5'-end N-acetyl-alpha-D-glucosamine-diphospho-uridyl-ribonucleoside in mRNA + H2O = a 5'-end phospho-ribonucleoside in mRNA + UDP-N-acetyl-alpha-D-glucosamine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "82603", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/82603" } ] }, { "id": "R-SSC-2393939", "name": "Cytosolic NUDT5 hydrolyses ADP-ribose to R5P and AMP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2393939", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2393939" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480XE17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480XE17" }, { "id": "PS51462", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51462" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nudix hydrolase", "eco_id": "ECO_0000259", "start_pos": 57, "end_pos": 199, "start_aa": "Gln", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480HN51-1", "uniprot_ac": "A0A480HN51", "uniprot_id": "A0A480HN51_PIG", "mass": { "chemical_mass": 138878.0, "monoisotopic_mass": 138878.0 }, "refseq": { "ac": "XP_005663903", "name": "nck-associated protein 5-like isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663903" }, "gene_names": [ { "name": "NCKAP5L", "type": "recommended", "evidence": [ { "id": "A0A480HN51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480HN51" } ] }, { "name": "NCKAP5L", "type": "synonym", "evidence": [ { "id": "XP_005663903", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663903" } ] } ], "protein_names": [ { "name": "NCK associated protein 5 like", "type": "synonym", "evidence": [ { "id": "A0A480HN51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480HN51/entry#names_and_taxonomy" } ] }, { "name": "nck-associated protein 5-like isoform X3", "type": "synonym", "evidence": [ { "id": "XP_005663903", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663903" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480HN51", "url": "https://www.uniprot.org/uniprotkb/A0A480HN51" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NCKAP5L", "url": "https://www.uniprot.org/uniprotkb/A0A480HN51", "locus": { "chromosome": "5", "start_pos": 15711253, "end_pos": 15725097, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000209", "url": "https://www.ensembl.org/id/ENSSSCG00000000209" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000209", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000209", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516908", "url": "https://www.ncbi.nlm.nih.gov/gene/100516908", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026163", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026163", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032769", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032769", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "SWPACGP", "url": "https://omabrowser.org/oma/group/SWPACGP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480HN51", "url": "https://www.orthodb.org/?gene=A0A480HN51", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21740", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21740", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21740:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21740:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15246", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15246", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005663903", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663903", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B3Z5", "url": "https://www.uniprot.org/uniprotkb/A0A287B3Z5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B3Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3Z5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480HN51", "url": "https://www.uniprot.org/uniprotkb/A0A480HN51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480HN51-1", "url": "https://www.uniprot.org/uniprotkb/A0A480HN51-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEAMDQPAESPGNPKPGEGGDDSMEPGTCQELLHRLRELEAENTALAQANENQRETYERCLDEVANHVVQALLNQKDLREECIKLKKRVFDLERQNQMLSALFQQKLQLTAGSLPQIPLAPLQPPSEPPASPSLSSAEGPATSLPLGRCAGQREVCWEQQLRPGGPGPPAAPPPALDALSPFLRKKAQILEVLRALEETDPLLLCSPATPWQPTGEGPGSPEPINGELCGPPQPEPSPWAPYLLLGPGSLGGLLHWERLLGGPGEEEGAGRSWGPGRGSLQAQGTGSGPPCAPGSSSSSSSDEAGDPNEAPSPDTLLGALARKQLNLGQLLEDTESYLQAFLAGAACPLSGDHPAPRQPSSPDPGPPQLSKSKGLPKSAWAGGTPEAHRPGFGATSEGQGPLPFLSVFMGAGDAPLGARPGHPHSSSQVKSKLQIGPPSPGEAQGPLLPSPARGLKFLKLPPASEKVPSPGGPQLSPQLPRNSRIPCRNSGSDGSPSPLLARRGLGGGELSPEGPQGLPTSPSPCVTTPDSAQLRPPQPALPTALSPGPVVSPCYENILDLSRSPFRGPSPEPPPSPLQVPTYPQLTLEVPRAPEVLRSPGVPSSPCLPESCPYESTQEKSLDKAGSESPHPGRRPPGGSSKKPGQGAGRRPGDPGFTPLRDRLAALGKLKTGPEGPQGPEKNGVQTRPGTEKARGAGRSGESPGDMVPPASRPPEPPEVKGALRGAVASGTSSLKQQEPGLLGDPGARVYSSHSMGGRVDLEPISPRSCLTKVELAKSRLAGALCPQVPRTPAKVPTSAPSLGKPNKSPHGSPTKLPSKSPTKVAPRPVGPPATKEAPKADKGKGPPWADCGGTVAQPAPPAPGPADPSPGPEGRPPHSAIEEKVMKGIEENVLRLQGQERAPSTEAKHRNTSSIASWFGLKKSKLPALNRRTEATKGKEGASGGSPLRKEVKVEARKLEAESLNISKLMAKAEDLRRALEEEKAYLSSRARPRPGGPVPGPTAGLGQVQGQLAGMYQGADTFMQQLLNRVDGKELPPKSWREPKPEYGDFQPVASDPKNPWPACGPRNGLVGPLQGCGKPPGKPSSEPGRREEMPSEDNLTEPVPTSHFTACGSLTRTLDSGIGTFPPPDHGSSGTPSKNLPKTKPPRLEPPPGVPPARPPPLTKVPRRAHTLEREVPGIEELLVSGRHPSMPAFPALLTAAPGHRGHQTCPDDPCEDPGPPPPVQLAKNWTFPNARAAGGSSDPFLCPPRPLEGLPRTPMALPVDRKQNLEPSRPAPALQGPAFGGSRTPSTSDVGEEGRVASGGPPGLETSESLSDSLYDSLSSCGSQG", "length": 1334, "header": "tr|A0A480HN51-1|A0A480HN51_PIG Isoform 1 of NCK associated protein 5 like OS=Sus scrofa OX=9823 GN=NCKAP5L PE=4 SV=1 CANONICAL=A0A480HN51-1" }, "isoforms": [ { "isoform_ac": "A0A287B3Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480HN51/entry#A0A287B3Z5-1", "sequence": { "sequence": "MSEAMDQPAESPGNPKPGEGGDDSMEPGTCQELLHRLRELEAENTALAQANENQRETYERCLDEVANHVVQALLNQKDLREECIKLKKRVFDLERQNQMLSALFQQKLQLTAGSLPQIPLAPLQPPSEPPASPSLSSAEGPATSLPLGRCAGQREVCWEQQLRPGGPGPPAAPPPALDALSPFLRKKAQILEVLRALEETDPLLLCSPATPWQPTGEGPGSPEPINGELCGPPQPEPSPWAPYLLLGPGSLGGLLHWERLLGGPGEEEGAGRSWGPGRGSLQAQGTGSGPPCAPGSSSSSSSDEAGDPNEAPSPDTLLGALARKQLNLGQLLEDTESYLQAFLAGAACPLSGDHPAPRQPSSPDPGPPQLSKSKGLPKSAWAGGTPEAHRPGFGATSEGQGPLPFLSVFMGAGDAPLGARPGHPHSSSQVKSKLQIGPPSPGEAQGPLLPSPARGLKFLKLPPASEKVPSPGGPQLSPQLPRNSRIPCRNSGSDGSPSPLLARRGLGGGELSPEGPQGLPTSPSPCVTTPDSAQLRPPQPALPTALSPGPVVSPCYENILDLSRSPFRGPSPEPPPSPLQVPTYPQLTLEVPRAPEVLRSPGVPSSPCLPESCPYESTQEKSLDKAGSESPHPGRRPPGGSSKKPGQGAGRRPGDPGFTPLRDRLAALGKLKTGPEGPQGPEKNGVQTRPGTEKARGAGRSGESPGDMVPPASRPPEPPEVKGALRGAVASGTSSLKQQEPGLLGDPGARVYSSHSMGGRVDLEPISPRSCLTKVELAKSRLAGALCPQVPRTPAKVPTSAPSLGKPNKSPHGSPTKLPSKSPTKVAPRPVGPPATKEAPKADKGKGPPWADCGGTVAQPAPPAPGPADPSPGPEGRPPHSAIEEKVMKGIEENVLRLQGQERAPSTEAKHRNTSSIASWFGLKKSKLPALNRRTEATKGKEGASGGSPLRKEVKVEARKLEAESLNISKLMAKAEDLRRALEEEKAYLSSRARPRPGGPVPGPTAGLGQVQGQLAGMYQGADTFMQQLLNRVDGKELPPKSWREPKPEYGDFQPVASDPKNPWPACGPRNGLVGPLQGCGKPPGKPSSEPGRREEMPSEDNLTEPVPTSHFTACGSLTRTLDSGIGTFPPPDHGSSGTPSKNLPKTKPPRLEPPPGVPPARPPPLTKVPRRAHTLEREVPGIEELLVSGRHPSMPAFPALLTAAPGHRGHQTCPDDPCEDPGPPPPVQLAKNWTFPNARAAGGSSDPFLCPPRPLEGLPRTPMVSMAEGEREQPWRE", "length": 1278, "header": "tr|A0A287B3Z5-1|A0A480HN51_PIG Computationally mapped isoform of NCK associated protein 5 like OS=Sus scrofa OX=9823 GN=NCKAP5L PE=4 SV=1 CANONICAL=A0A480HN51-1" }, "locus": { "chromosome": "5", "start_pos": 15723954, "end_pos": 15712326, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038291.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038291.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055630.3", "url": "https://www.ensembl.org/id/ENSSSCP00000055630.3" } ] } }, { "isoform_ac": "A0A480HN51-1", "url": "https://www.uniprot.org/uniprotkb/A0A480HN51/entry#A0A480HN51-1", "sequence": { "sequence": "MSEAMDQPAESPGNPKPGEGGDDSMEPGTCQELLHRLRELEAENTALAQANENQRETYERCLDEVANHVVQALLNQKDLREECIKLKKRVFDLERQNQMLSALFQQKLQLTAGSLPQIPLAPLQPPSEPPASPSLSSAEGPATSLPLGRCAGQREVCWEQQLRPGGPGPPAAPPPALDALSPFLRKKAQILEVLRALEETDPLLLCSPATPWQPTGEGPGSPEPINGELCGPPQPEPSPWAPYLLLGPGSLGGLLHWERLLGGPGEEEGAGRSWGPGRGSLQAQGTGSGPPCAPGSSSSSSSDEAGDPNEAPSPDTLLGALARKQLNLGQLLEDTESYLQAFLAGAACPLSGDHPAPRQPSSPDPGPPQLSKSKGLPKSAWAGGTPEAHRPGFGATSEGQGPLPFLSVFMGAGDAPLGARPGHPHSSSQVKSKLQIGPPSPGEAQGPLLPSPARGLKFLKLPPASEKVPSPGGPQLSPQLPRNSRIPCRNSGSDGSPSPLLARRGLGGGELSPEGPQGLPTSPSPCVTTPDSAQLRPPQPALPTALSPGPVVSPCYENILDLSRSPFRGPSPEPPPSPLQVPTYPQLTLEVPRAPEVLRSPGVPSSPCLPESCPYESTQEKSLDKAGSESPHPGRRPPGGSSKKPGQGAGRRPGDPGFTPLRDRLAALGKLKTGPEGPQGPEKNGVQTRPGTEKARGAGRSGESPGDMVPPASRPPEPPEVKGALRGAVASGTSSLKQQEPGLLGDPGARVYSSHSMGGRVDLEPISPRSCLTKVELAKSRLAGALCPQVPRTPAKVPTSAPSLGKPNKSPHGSPTKLPSKSPTKVAPRPVGPPATKEAPKADKGKGPPWADCGGTVAQPAPPAPGPADPSPGPEGRPPHSAIEEKVMKGIEENVLRLQGQERAPSTEAKHRNTSSIASWFGLKKSKLPALNRRTEATKGKEGASGGSPLRKEVKVEARKLEAESLNISKLMAKAEDLRRALEEEKAYLSSRARPRPGGPVPGPTAGLGQVQGQLAGMYQGADTFMQQLLNRVDGKELPPKSWREPKPEYGDFQPVASDPKNPWPACGPRNGLVGPLQGCGKPPGKPSSEPGRREEMPSEDNLTEPVPTSHFTACGSLTRTLDSGIGTFPPPDHGSSGTPSKNLPKTKPPRLEPPPGVPPARPPPLTKVPRRAHTLEREVPGIEELLVSGRHPSMPAFPALLTAAPGHRGHQTCPDDPCEDPGPPPPVQLAKNWTFPNARAAGGSSDPFLCPPRPLEGLPRTPMALPVDRKQNLEPSRPAPALQGPAFGGSRTPSTSDVGEEGRVASGGPPGLETSESLSDSLYDSLSSCGSQG", "length": 1334, "header": "tr|A0A480HN51-1|A0A480HN51_PIG Isoform 1 of NCK associated protein 5 like OS=Sus scrofa OX=9823 GN=NCKAP5L PE=4 SV=1 CANONICAL=A0A480HN51-1" }, "locus": { "chromosome": "5", "start_pos": 15723954, "end_pos": 15711923, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081938.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081938.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065649.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065649.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1005, "start_aa": "Thr", "end_pos": 1005, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1005", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1139, "start_aa": "Thr", "end_pos": 1139, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1139", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B3Z5", "url": "https://www.uniprot.org/uniprotkb/A0A287B3Z5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K5W1-1", "protein_name": "NCK-associated protein 5-like", "gene_name": "Nckap5l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSLDWLSGRREAGSGRGAGLIGPFKALTSRGGSGTPLFLPPPTPARPRDAAMDPADQASRTQHLISPARSCSQTLTPKAMDQPAGGTGNLRPASGEDSSMELGTCQELLHRLRELEAENSALAQANENQRETYERCLDEVANHVVQALLNQKDLREECIKLKKRVFDLERQNQMLSTLLQQKLQLTTSSLPQIPLTPLQPPSERPASPSPNAAEGPATTLPLGHCAGPREVCWEQQLRPGGPGPPATPPPALDALSPFLRKKAQILEVLRALEETDPLLLCSPATPWRPTGQGPGSPEPINGELCGPPQPEPSPWAPYLLLGPGSLGALLHWERALGGPGEEEGIRQPWASSRAPLPAQGPGAGPHCAPGSSSSSSSDEAGDPNEAPSPDTLLGVLARKQLNLGQLLGDTEISLPAFLAGATGPLSGDHPHPSAGKLSSPDPGAPQVSKSKGLPKSAWGGSAPEASRLGFGATSEGQGPLPFLSMFMGAGDAPLGSRPGHSHSSSQVKSKLQIGLPSPGDAQGPLLPSPARGLKFLKLPPASEKVPSPGGPQLSPQLPRSSRIPCRNSGSDGSPSPLLARRGLGGGELSPEGAQGLPSSPLPCSANPDSAQLRTSQSAVSTTLSAGPVVSPCFENILDLSRGTFRGSSTEPPPSPLQVPTYPQLTLEVPQTHEVLRSPGAPSPGLPGPCPYSSPQEKSVDRAGSESPHLSRRTPCGSSKKPGQGSGRRPGDPSHTPLRDRLAALGKLKTGPEGPLGPEKNGVPARSNTEKAKAPVRSGECPGDVSPSTRPLEQPEAKGIFRGAVALGTSSLKQQEPGLTDLGARVYSSHSMGARVDLEPISPRSCLTKVELAKSRLAGALCPQMPRTPAKVPTSAPSLGKPKSPHSSPTKLPSKSPTKVVPRPVAPLGTKEPPKPDKVKGPPWADCGTTVGQPTSPVPGPVDQSPGPEGPVPHSAIEEKVMKGIEENVLRLQGQERTPGSEAKHRNASSIASWFGLKKSKLPALNRRTEAAKNKEGAGGGSPLRKEVKTEAWKLEAESLNISKLMAKAEDLRRALEEEKAYLSRARPRPGGPATVPSPSVGQPQGQLTGMYQGADTFMQQLLNRVDGKDLPPESWREPKPEYGDFQPVSSDPKSPWPACGPRNGLVGPLQGCGKPGKPISEPGRREAMPPEDNLAEPVSTAHFTACGSLTRTLDSGIGTFPPPDHSSSGTPSKNLPKTKSFRLDPPPGAPAARPPGLTKVPRRAHTLEREVPGIEELLVSGRHPSMPAFPALLTAPPGHRSHQTCPDDPCEDPGPPPPVQLAKNWTFPNTRTSGSTSDPFLCPPRQLEGLPRTAMALPVDRKQSLDPSRTSMPQGPAFGGSRTPSTSDMGEEGRVASGGAPGLETSESLSDSLYDSLSSCGSQG", "length": 1405 }, "evidence": [ { "id": "A0A480HN51", "url": "https://omabrowser.org/oma/group/A0A480HN51/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1B808-1", "protein_name": "NCK associated protein 5 like", "gene_name": "NCKAP5L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLESRAIPKNPGQGFSWAPGGAEHRSCKVTILAACVSVPAWVRRQRQPAGASLTYPQGLMSEAMDQSAGSPGNLNPGEGGDGSTEPGTCQELLHRLRELEAENSALAQANENQRETYERCLDEVANHVVQALLNQKDLREECIKLKKRVFDLERQNQMLSALFQQKLQLTAGSLPQIPLAPLQPPSEPPASPSLSSAEGPATPLPLGRCAGQREVCWEQQLRSGGPGPPATPPPALDALSPFLQKKAQILEVLRALEETDPLLLCSPATPWQPPGEGPGSPEPINGELCGPPQPEPSPWAPYLLLGPGSLGGLLHWERFLGAPGEEEGAGRPWGPGRGSPQAQGTGSGPPCAPGSSSSSSSDEAGDPNEAPSPDTLLGALARKQLNLGQLLEDTESYLQAFLAGAACPLSGDHPGPRQPSSPDQGPPQLSKSKGLPKSAWVGGTPEANRPGFGATSEGQGSLPFLSMFMGAGDTPLGSRPGHPHSSSQVKSKLQIGPPSPGEAQGPLLPSPARGLKFLKLPPASEKVPSPGGPQLSPQLPRNSRIPCRNSGSDGSPSPLLARRGLGGGELSPEGAQGLPTSPSPCSMTPDSAQLRPPQPALSATLSPGPTVSPCYENILDLSRNTFRGPSPEPPPSPLQVPTYPQLTLEVPRVPEVLRSPGIPSSPCHPESCPYEGTQEKSSDKAGSESPHPGRRGPGSSSKKPSQGAGRRPGDPGYTPLRDRLAALGKLKTGPEGSQGPEKNGVPVKPGTEKARGAGKLGESTGDTAPPASRPPEQPEAKGALRGAVALGTSSLKQQESGLLGDPGARVYSSHSMGARVDLEPLSPRSCLTKVELAKSRLAGALCPQVPRTPAKVPTSAPSLGKPNKSPHSSPTKLPSKSPTKVVPRPVVPPATKEPPKPDKGKGPPWADCGGTMAQPMSPAPGAADPGPGPEGRAPHSAIEEKVMKGIEENMLRLQGQERAPGTEAKHRNTSSIASWFGLKKSKLPALNRRTETTKGKEGAGGSPLRKEVKVEARKLEAESLNISKLMAKAEDLRRALEEEKAYLSSRARPRPGGPAPGTSAGLGQGQGQLVGMYQGADTFMQQLLNRVDGKELPPKSWREPKPEYGDFQPVSSDPKNPWPACGPRNGLVGPLQGCGKPGKPSIEPGRREEMPSEDSLAEPVTTSHFTACGSLTRTLDSGIGTFPPPDHGSSGTPSKNLPKTKPPRLEPPPGVPPARPPPLTKVPRRAHTLEREVPGIEELLVSGRHPSMPAFPALLTAAPGHRGHQTCPDGECLGRGRVGLSGSSAHHPPSPCPRTDPCEDPGPPPPVQLAKNWTFPNARAAGGSSDPFLCPPRQLEGLPRTPMALPVDGKRSLEPTRPAPAPQGPAFGCSRTPSTSDVGEEGRVASGGPPGLETSESLSDSLYDSLSSCGSQG", "length": 1417 }, "evidence": [ { "id": "A0A480HN51", "url": "https://omabrowser.org/oma/group/A0A480HN51/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6GQX2-1", "protein_name": "Nck-associated protein 5-like", "gene_name": "Nckap5l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQPAGGTGKLRASAGEDDSMELSTCQELLHRLRELEAENSALAQANENQRETYERCLDEVANHVVQALLNQKDLREECIKLKKRVFDLERQNQVLSALLQQKLQLTANSLPQIPLTPLQPPSERPTSPAPNVSEGPATSLPSGLCAGQREVCWEQQLRPGGPGPPATPPPALDALSPFLRKKAQILEVLRALEETDPLLLCSPATPWRPTGQGPGSPEPINGEPCGPPQPEPSPWAPYLLLGPGSLGALLHWERVLGGPGEEEGIRQPWASSRAPPSAQGPSSGPHCAPGSSSSSSSDEAGDPNEAPSPDTLLGALARKQLNLGQLLGDTETYLQAFLAGATGPLSGDQPGPGKPNSPDPGPPQVSKSKGLPKSAWGASTPEATRLGFGATSEGQGPLPFLSMFMGAGDAPLGSRPGHPHSSSQVKSKLQIGPPSPGDAQGPLLPSPARGLKFLKLPPASEKVPSPGGPQLSPQLPRSSRIPCRNSGSDGSPSPLLARRGLGGGELSPEGAQGLPGSPLPCSAMPDSAQLRPSQSTVSTALSPGPVVSPCFENILDLSRSTFRGSPPEPPPSPLQVPTYPQLTLEVPQTPEVLRSPGAPSPGLPESCPYSGPQEKSMDRAGSESPHASRRTPGGSSKKPGQGSGRRPGDPSHTPLRDRLAALGKLKTGPEGPLGPEKNGVPARSSAEKARALVRSGECAGDVPPSARPLEQPEAKGIFRGAVALGTSSLKQQEPGLTDPGARVYSSHSMGARVDLEPISPRSCLTKVELAKSRLAGALCPQMPRTPAKVPTSAPSLGKPKSPHSSPTKLPSKSPTKVVPRPVVPLGTKEPPKPDKVKGPPWADCGSTVGQPTSPVAGPADPSQGSEGPAPHSAIEEKVMKGIEENVLRLQGQERTPGSEAKHRNTSSIASWFGLKKSKLPALNRRTEATKNKDGAGGGSPLRKEVKTEARKLEAESLNISKLMAKAEDLRRALEEEKAYLSRARPRPGGPATVPSPGLGQAQGQLAGMYQGADTFMQQLLNRVDGKELPPKSWREPKPEYGDFQPVSTDPKSPWPACGPRNGLVGPLQGCGKPGKPSSEPGRREEMPSEDSLAEPVSTTHFTACGSLTRTLDSGIGTFPPPDHSSSGTPSKNLPKTKSLRLDPPPGAPPARPPGLTKVPRRAHTLEREVPGIEELLVSGRHPSMPAFPGLLTAPPGHRSHQTCPDDPCEDPGPPPPVQLAKNWTFPNTRTAGSSSDPFLCPPRQLEGLPRTPMALPVDRKQSVDPSRTSTPQGPAFGGSRTPSTSDMGEEGRVASGGAPGLETSESLSDSLYDSLSSCGSQG", "length": 1323 }, "evidence": [ { "id": "A0A480HN51", "url": "https://omabrowser.org/oma/group/A0A480HN51/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HCH0-1", "protein_name": "Nck-associated protein 5-like", "gene_name": "NCKAP5L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSEAMDQPAGGPGNPRPGEGDDGSMEPGTCQELLHRLRELEAENSALAQANENQRETYERCLDEVANHVVQALLNQKDLREECIKLKKRVFDLERQNQMLSALFQQKLQLTTGSLPQIPLTPLQPPSEPPASPSLSSTEGPAAPLPLGHCAGQREVCWEQQLRPGGPGPPAAPPPALDALSPFLRKKAQILEVLRALEETDPLLLCSPATPWRPPGQGPGSPEPINGELCGPPQPEPSPWAPCLLLGPGNLGGLLHWERLLGGLGGEEDTGRPWGPSRGPPQAQGTSSGPNCAPGSSSSSSSDEAGDPNEAPSPDTLLGALARRQLNLGQLLEDTESYLQAFLAGAAGPLNGDHPGPGQSSSPDQAPPQLSKSKGLPKSAWGGGTPEAHRPGFGATSEGQGPLPFLSMFMGAGDAPLGSRPGHPHSSSQVKSKLQIGPPSPGEAQGPLLPSPARGLKFLKLPPTSEKSPSPGGPQLSPQLPRNSRIPCRNSGSDGSPSPLLARRGLGGGELSPEGAQGLPTSPSPCYTTPDSTQLRPPQSALSTTLSPGPVVSPCYENILDLSRSTFRGPSPEPPPSPLQVPTYPQLTLEVPQAPEVLRSPGVPPSPCLPESYPYGSPQEKSLDKAGSESPHPGRRTPGNSSKKPSQGSGRRPGDPGSTPLRDRLAALGKLKTGPEGALGSEKNGVPARPGTEKTRGPGKSGESAGDMVPSIHRPLEQLEAKGGIRGAVALGTNSLKQQEPGLMGDPGARVYSSHSMGARVDLEPVSPRSCLTKVELAKSRLAGALCPQVPRTPAKVPTSAPSLGKPNKSPHSSPTKLPSKSPTKVVPRPGAPLVTKESPKPDKGKGPPWADCGSTTAQSTPLVPGPTDPSQGPEGLAPHSAIEEKVMKGIEENVLRLQGQERAPGAEVKHRNTSSIASWFGLKKSKLPALNRRTEATKNKEGAGGGSPLRREVKMEARKLEAESLNISKLMAKAEDLRRALEEEKAYLSSRARPRPGGPAPGPNTGLGQVQGQLAGMYQGADTFMQQLLNRVDGKELPSKSWREPKPEYGDFQPVSSDPKSPWPACGPRNGLVGPLQGCGKPPGKPSSEPGRREEMPSEDSLAEPVPTSHFTACGSLTRTLDSGIGTFPPPDHGSSGTPSKNLPKTKPPRLDPPPGVPPARPPPLTKVPRRAHTLEREVPGIEELLVSGRHPSMPAFPALLPAAPGHRGHETCPDDPCEDPGPTPPVQLAKNWTFPNTRAAGSSSDPLMCPPRQLEGLPRTPMALPVDRKRSQEPSRPSPTPQGPPFGGSRTPSTSDMAEEGRVASGGPPGLETSESLSDSLYDSLSSCGSQG", "length": 1334 }, "evidence": [ { "id": "A0A480HN51", "url": "https://omabrowser.org/oma/group/A0A480HN51/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A480HN51", "url": "https://www.uniprot.org/uniprotkb/A0A480HN51" } ], "pmid": "" }, { "name": "microtubule plus-end", "id": "GO:0035371", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035371", "evidence": [ { "database": "UniProtKB", "id": "A0A480HN51", "url": "https://www.uniprot.org/uniprotkb/A0A480HN51" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "microtubule depolymerization", "id": "GO:0007019", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007019", "evidence": [ { "database": "UniProtKB", "id": "A0A480HN51", "url": "https://www.uniprot.org/uniprotkb/A0A480HN51" } ], "pmid": "" }, { "name": "microtubule bundle formation", "id": "GO:0001578", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001578", "evidence": [ { "database": "UniProtKB", "id": "A0A480HN51", "url": "https://www.uniprot.org/uniprotkb/A0A480HN51" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1102, "end_pos": 1104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1233, "end_pos": 1235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 808, "end_pos": 810, "annotation": "n_glycosylation_sequon" }, { "start_pos": 913, "end_pos": 915, "annotation": "n_glycosylation_sequon" }, { "start_pos": 967, "end_pos": 969, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480HN51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480HN51" }, { "id": "PF15246", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15246" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nck-associated protein 5 C-terminal", "eco_id": "ECO_0000259", "start_pos": 880, "end_pos": 1181, "start_aa": "His", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1005, 1139 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1102, "end_pos": 1104 }, { "start_pos": 1233, "end_pos": 1235 }, { "start_pos": 808, "end_pos": 810 }, { "start_pos": 913, "end_pos": 915 }, { "start_pos": 967, "end_pos": 969 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480ZQ94-1", "uniprot_ac": "A0A480ZQ94", "uniprot_id": "A0A480ZQ94_PIG", "mass": { "chemical_mass": 50145.0, "monoisotopic_mass": 50145.0 }, "refseq": { "ac": "XP_001929062", "name": "fibulin-5 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929062" }, "gene_names": [ { "name": "FBLN5", "type": "recommended", "evidence": [ { "id": "A0A480ZQ94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480ZQ94" } ] }, { "name": "FBLN5", "type": "synonym", "evidence": [ { "id": "XP_001929062", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929062" } ] } ], "protein_names": [ { "name": "Fibulin-5", "type": "recommended", "evidence": [ { "id": "A0A480ZQ94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480ZQ94/entry#names_and_taxonomy" } ] }, { "name": "fibulin-5 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_001929062", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929062" } ] } ], "function": [ { "annotation": "Essential for elastic fiber formation, is involved in the assembly of continuous elastin (ELN) polymer and promotes the interaction of microfibrils and ELN. Stabilizes and organizes elastic fibers in the skin, lung and vasculature. Promotes adhesion of endothelial cells through interaction of integrins and the RGD motif. Vascular ligand for integrin receptors which may play a role in vascular development and remodeling. May act as an adapter that mediates the interaction between FBN1 and ELN.", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZQ94", "url": "https://www.uniprot.org/uniprotkb/A0A480ZQ94#function" }, { "database": "UniProtKB", "id": "ARBA00046125", "url": "https://www.uniprot.org/uniprotkb/ARBA00046125#function" }, { "database": "UniProtKB", "id": "F1SD87", "url": "https://www.uniprot.org/uniprotkb/F1SD87#function" }, { "database": "UniProtKB", "id": "A0A287B4E8", "url": "https://www.uniprot.org/uniprotkb/A0A287B4E8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480ZQ94", "url": "https://www.uniprot.org/uniprotkb/A0A480ZQ94" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBLN5", "url": "https://www.uniprot.org/uniprotkb/A0A480ZQ94", "locus": { "chromosome": "7", "start_pos": 113423632, "end_pos": 113512198, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002444", "url": "https://www.ensembl.org/id/ENSSSCG00000002444" } ] } } ], "crossref": [ { "id": "ENSSSCG00000002444", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002444", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155248", "url": "https://www.ncbi.nlm.nih.gov/gene/100155248", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018097", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018097", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026823", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026823", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052235", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052235", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155248", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155248", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LICRFGF", "url": "https://omabrowser.org/oma/group/LICRFGF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480ZQ94", "url": "https://www.orthodb.org/?gene=A0A480ZQ94", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SD87", "url": "https://www.orthodb.org/?gene=F1SD87", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24050", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24050", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24050:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24050:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07645", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07645", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12662", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12662", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22914", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22914", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1566948", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1566948", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2129379", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2129379", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001929062", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929062", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B4E8", "url": "https://www.uniprot.org/uniprotkb/A0A287B4E8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B4E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B4E8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480ZQ94", "url": "https://www.uniprot.org/uniprotkb/A0A480ZQ94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480ZQ94-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZQ94-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SD87", "url": "https://www.uniprot.org/uniprotkb/F1SD87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SD87-1", "url": "https://www.uniprot.org/uniprotkb/F1SD87-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGLKRILTATILALCLPSPGDAQQQCTNGFDLDRSSGQCLDIDECRTIPEACRGDMMCVNQNGGYLCIPRTNPVYRGPYSNPYSNPYSGPYPAAAPPLSAPNYPTISRPLICRFGYQMDESNQCVDVDECATDSHQCNPTQICINTEGGYTCSCTDGYWLLEGQCLDIDECRYGYCQQLCANVPGSYSCTCNPGFTLNEDGRSCQDVNECATENPCVQTCVNTYGSFICRCDPGYELEDDGVHCSDMDECSFSEFLCQHECVNQPGTYFCSCPAGYILMDDNRSCQDINECEHRNHTCILQQTCYNLQGGFKCIDPIRCEEPYLRISDNRCMCPAENPGCRDQPFTILYRDMDVVSGRSVPADIFQMQATTRYPGAYYIFQIKSGNEGREFYMRQTGPISATLVMTRPIKGPRDIQLDLEMITVNTVINFRGSSVIRLRIYVSQYPF", "length": 448, "header": "tr|A0A480ZQ94-1|A0A480ZQ94_PIG Isoform 1 of Fibulin-5 OS=Sus scrofa OX=9823 GN=FBLN5 PE=1 SV=1 CANONICAL=A0A480ZQ94-1" }, "isoforms": [ { "isoform_ac": "A0A287B4E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZQ94/entry#A0A287B4E8-1", "sequence": { "sequence": "MRPRSLEPMKSGNCRQKCIKITSAFSLSPFLQQQCTNGFDLDRSSGQCLDIDECRTIPEACRGDMMCVNQNGGYLCIPRTNPVYRGPYSNPYSNPYSGPYPAAAPPLSAPNYPTISRPLICRFGYQMDESNQCVDVDECATDSHQCNPTQICINTEGGYTCSCTDGYWLLEGQCLDIDECRYGYCQQLCANVPGSYSCTCNPGFTLNEDGRSCQDVNECATENPCVQTCVNTYGSFICRCDPGYELEDDGVHCSDMDECSFSEFLCQHECVNQPGTYFCSCPAGYILMDDNRSCQDINECEHRNHTCILQQTCYNLQGGFKCIDPIRCEEPYLRISDNRCMCPAENPGCRDQPFTILYRDMDVVSGRSVPADIFQMQATTRYPGAYYIFQIKSGNEGREFYMRQTGPISATLVMTRPIKGPRDIQLDLEMITVNTVINFRGSSVIRLRIYVSQYPF", "length": 456, "header": "tr|A0A287B4E8-1|A0A480ZQ94_PIG Computationally mapped isoform of Fibulin-5 OS=Sus scrofa OX=9823 GN=FBLN5 PE=1 SV=2 CANONICAL=A0A480ZQ94-1" }, "locus": { "chromosome": "7", "start_pos": 113511200, "end_pos": 113424421, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052301.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052301.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050979.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050979.2" } ] } }, { "isoform_ac": "A0A480ZQ94-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZQ94/entry#A0A480ZQ94-1", "sequence": { "sequence": "MPGLKRILTATILALCLPSPGDAQQQCTNGFDLDRSSGQCLDIDECRTIPEACRGDMMCVNQNGGYLCIPRTNPVYRGPYSNPYSNPYSGPYPAAAPPLSAPNYPTISRPLICRFGYQMDESNQCVDVDECATDSHQCNPTQICINTEGGYTCSCTDGYWLLEGQCLDIDECRYGYCQQLCANVPGSYSCTCNPGFTLNEDGRSCQDVNECATENPCVQTCVNTYGSFICRCDPGYELEDDGVHCSDMDECSFSEFLCQHECVNQPGTYFCSCPAGYILMDDNRSCQDINECEHRNHTCILQQTCYNLQGGFKCIDPIRCEEPYLRISDNRCMCPAENPGCRDQPFTILYRDMDVVSGRSVPADIFQMQATTRYPGAYYIFQIKSGNEGREFYMRQTGPISATLVMTRPIKGPRDIQLDLEMITVNTVINFRGSSVIRLRIYVSQYPF", "length": 448, "header": "tr|A0A480ZQ94-1|A0A480ZQ94_PIG Isoform 1 of Fibulin-5 OS=Sus scrofa OX=9823 GN=FBLN5 PE=1 SV=1 CANONICAL=A0A480ZQ94-1" }, "locus": { "chromosome": "7", "start_pos": 113511682, "end_pos": 113424421, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088326.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088326.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071266.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071266.1" } ] } }, { "isoform_ac": "F1SD87-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ZQ94/entry#F1SD87-1", "sequence": { "sequence": "MRPRSLEPMKSGNCRQKCMILTATILALCLPSPGDAQQQCTNGFDLDRSSGQCLDIDECRTIPEACRGDMMCVNQNGGYLCIPRTNPVYRGPYSNPYSNPYSGPYPAAAPPLSAPNYPTISRPLICRFGYQMDESNQCVDVDECATDSHQCNPTQICINTEGGYTCSCTDGYWLLEGQCLDIDECRYGYCQQLCANVPGSYSCTCNPGFTLNEDGRSCQDVNECATENPCVQTCVNTYGSFICRCDPGYELEDDGVHCSDMDECSFSEFLCQHECVNQPGTYFCSCPAGYILMDDNRSCQDINECEHRNHTCILQQTCYNLQGGFKCIDPIRCEEPYLRISDNRCMCPAENPGCRDQPFTILYRDMDVVSGRSVPADIFQMQATTRYPGAYYIFQIKSGNEGREFYMRQTGPISATLVMTRPIKGPRDIQLDLEMITVNTVINFRGSSVIRLRIYVSQYPF", "length": 461, "header": "tr|F1SD87-1|F1SD87_PIG Computationally mapped isoform of Fibulin-5 OS=Sus scrofa OX=9823 GN=FBLN5 PE=1 SV=3 CANONICAL=A0A480ZQ94-1" }, "locus": { "chromosome": "7", "start_pos": 113511200, "end_pos": 113424421, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002714.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002714.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002645.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002645.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B4E8", "url": "https://www.uniprot.org/uniprotkb/A0A287B4E8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155248", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155248", "resource": "KEGG Pathway" }, { "id": "R-SSC-1566948", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1566948", "resource": "Reactome", "description": "Elastic fibre formation" }, { "id": "R-SSC-2129379", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2129379", "resource": "Reactome", "description": "Molecules associated with elastic fibres" } ], "orthologs": [ { "uniprot_canonical_ac": "B8A4X3-1", "protein_name": "Developmental arteries and neural crest EGF-like protein", "gene_name": "fbln5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFVELRGLSLLSSKRMLSVVLCIVCSINYGKSQTCSDGFTFDRRSRQCMDIDECRTLPDPCRGDMRCVNQNGGYLCMPRGLYSQSYGRNSPLPYPEASYPEEPYPDRSLGYSETYSAPVAPVAPGPGPGPGPSYPIVSRTTPCLLGYTFGADGTCVDVDECEAESHQCNPTQVCINTAGGYTCSCTEGYWLVGGQCQDIDECRYGYCQQLCANVPGSYSCSCSPGFLLNTDARTCQDVDECVTDPCSHGCLNTYGSFMCTCDEGFELAADGTTCNDLDECSFSDFLCQHTCVNAPGSFSCACPSGYYVYEDGRSCEDLNECESGNNTCTTEQVCFNFQGGYTCLNPLRCDPPYIELSDNQCMCSAENPACRDRPFTVLYRHMDLSSGRSVPADIFQMQATTRYPGAFYIFQIKSGNEGREFYMRQTSNMSATLVLARPIKGPKTVVLDLEMVTVNNVINFRGSSIIRLTIFVSEHPF", "length": 477 }, "evidence": [ { "id": "A0A480ZQ94", "url": "https://omabrowser.org/oma/group/A0A480ZQ94/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9UBX5-1", "protein_name": "Fibulin-5", "gene_name": "FBLN5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPGIKRILTVTILALCLPSPGNAQAQCTNGFDLDRQSGQCLDIDECRTIPEACRGDMMCVNQNGGYLCIPRTNPVYRGPYSNPYSTPYSGPYPAAAPPLSAPNYPTISRPLICRFGYQMDESNQCVDVDECATDSHQCNPTQICINTEGGYTCSCTDGYWLLEGQCLDIDECRYGYCQQLCANVPGSYSCTCNPGFTLNEDGRSCQDVNECATENPCVQTCVNTYGSFICRCDPGYELEEDGVHCSDMDECSFSEFLCQHECVNQPGTYFCSCPPGYILLDDNRSCQDINECEHRNHTCNLQQTCYNLQGGFKCIDPIRCEEPYLRISDNRCMCPAENPGCRDQPFTILYRDMDVVSGRSVPADIFQMQATTRYPGAYYIFQIKSGNEGREFYMRQTGPISATLVMTRPIKGPREIQLDLEMITVNTVINFRGSSVIRLRIYVSQYPF", "length": 448 }, "evidence": [ { "id": "A0A480ZQ94", "url": "https://omabrowser.org/oma/group/A0A480ZQ94/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9WVH8-1", "protein_name": "Fibulin-5", "gene_name": "Fbln5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"id": "GO:0048251", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048251", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZQ94", "url": "https://www.uniprot.org/uniprotkb/A0A480ZQ94" } ], "pmid": "" }, { "name": "secretion", "id": "GO:0046903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046903", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZQ94", "url": "https://www.uniprot.org/uniprotkb/A0A480ZQ94" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZQ94", "url": "https://www.uniprot.org/uniprotkb/A0A480ZQ94" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A480ZQ94", "url": "https://www.uniprot.org/uniprotkb/A0A480ZQ94" } ], "pmid": "" } ] }, { 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homolog", "type": "synonym", "evidence": [ { "id": "A0A480MY39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480MY39/entry#names_and_taxonomy" } ] }, { "name": "lung adenoma susceptibility protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013848314", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848314" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480MY39", "url": "https://www.uniprot.org/uniprotkb/A0A480MY39" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C18orf54", "url": "https://www.uniprot.org/uniprotkb/A0A480MY39", "locus": { "chromosome": "1", "start_pos": 103887284, "end_pos": 103861246, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004531", "url": "https://www.ensembl.org/id/ENSSSCG00000004531" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004531", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004531", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154353", "url": "https://www.ncbi.nlm.nih.gov/gene/100154353", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031587", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031587", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052679", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052679", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HRTRKKN", "url": "https://omabrowser.org/oma/group/HRTRKKN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480MY39", "url": "https://www.orthodb.org/?gene=A0A480MY39", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1S1Z5", "url": "https://www.orthodb.org/?gene=F1S1Z5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35079", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35079", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35079:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35079:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15792", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15792", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013848314", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848314", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B8C7", "url": "https://www.uniprot.org/uniprotkb/A0A287B8C7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8C7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480MY39", "url": "https://www.uniprot.org/uniprotkb/A0A480MY39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480MY39-1", "url": "https://www.uniprot.org/uniprotkb/A0A480MY39-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S1Z5", "url": "https://www.uniprot.org/uniprotkb/F1S1Z5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S1Z5-1", "url": "https://www.uniprot.org/uniprotkb/F1S1Z5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAESNIKHRACSRESSVSSLLASCSLSGSNSTNSDGSFQYKDKLYSSASQALQAYIDDFDLSQMYPGAGTGKINIDKCSANMPEFSNYIYKPNNAFENLDDKKSSLSLYSREHTLNDIDSISLTTDDLLRLPADGSFPFTYIGSGHGISKKSKKRIGRLNSSVSEKNQNFQEPSTFMGKDNLVTPVVYTNVNGKQCGRLKNPKLVNKANKCVSVPSLYFSKKSSFRDSSEHSLEKNYPRWLTSQKSDLNVSGITSIPDFKYPVWLYNQDLLPDTNSQRISKIFEEDQYSPRHSYQAQRTSRLMNKLGCFEYSFEPSNISHSLSDKRLVNEYRCDCEHSQCQCENPLLPGSKKPFSGDKIELLILKAKSNLEHCTEELPKSMKKDDSPCSLDKLEAERSWENIPVTFKSPVPVNSDDSPQQTSKAKYAKEFLEDFLNNDNQSCTLSGGKHHGPVEALKQMLFNLQAVQESFSQNKTTEPKGEIKQVSEDDFSKLQLKESMVPITRSLQKALHHLSRLRDLVDDTSGKQSPKM", "length": 531, "header": "tr|A0A480MY39-1|A0A480MY39_PIG Isoform 1 of Chromosome 1 C18orf54 homolog OS=Sus scrofa OX=9823 GN=C18orf54 PE=4 SV=1 CANONICAL=A0A480MY39-1" }, "isoforms": [ { "isoform_ac": "A0A287B8C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480MY39/entry#A0A287B8C7-1", "sequence": { "sequence": "MAESNIKHRACSRESSVSSLLASCSLSGSNSTNSDGSFQYKDKLYSSASQALQAYIDDFDLSQMYPGAGTGKINIDKCSANMPEFSNYIYKPNNAFENLDDKKSSLSLYSREHTLNDIDSISLTTDDLLRLPADGSFPFTYIGSGHGISKKSKKRIGRLNSSVSEKNQNFQEPSTFMGKDNLVTPVVYTNVNGKQCGRLKNPKLVNKANKCVSVPSLYFSKKSSFRDSSEHSLEKNYPRWLTSQKSDLNVSGITSIPDFKYPVWLYNQDLLPDTNSQRISKIFEEDQYSPRHSYQAQRTSRLMNKLGCFEYSFEPSNISHSLSDKRLVNEYRCDCEHSQCQCENPLLPGSKKPFSGDKIELLILKAKSNLEHCTEELPKSMKKDDSPCSLDKLEAERSWENIPVTFKSPVPVNSDDSPQQTSKAKYAKEFLEDFLNNDNQSCTLSGGKHHGPVEALKQMLFNLQAVQESFSQNKTTEPKGEIKQVSEDDFSKLQLKESMVPITRSLQNFIDPVNLKDLWPSKL", "length": 523, "header": "tr|A0A287B8C7-1|A0A480MY39_PIG Computationally mapped isoform of Chromosome 1 C18orf54 homolog OS=Sus scrofa OX=9823 GN=C18orf54 PE=4 SV=2 CANONICAL=A0A480MY39-1" }, "locus": { "chromosome": "1", "start_pos": 103881280, "end_pos": 103865285, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043978.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043978.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052563.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052563.2" } ] } }, { "isoform_ac": "A0A480MY39-1", "url": "https://www.uniprot.org/uniprotkb/A0A480MY39/entry#A0A480MY39-1", "sequence": { "sequence": "MAESNIKHRACSRESSVSSLLASCSLSGSNSTNSDGSFQYKDKLYSSASQALQAYIDDFDLSQMYPGAGTGKINIDKCSANMPEFSNYIYKPNNAFENLDDKKSSLSLYSREHTLNDIDSISLTTDDLLRLPADGSFPFTYIGSGHGISKKSKKRIGRLNSSVSEKNQNFQEPSTFMGKDNLVTPVVYTNVNGKQCGRLKNPKLVNKANKCVSVPSLYFSKKSSFRDSSEHSLEKNYPRWLTSQKSDLNVSGITSIPDFKYPVWLYNQDLLPDTNSQRISKIFEEDQYSPRHSYQAQRTSRLMNKLGCFEYSFEPSNISHSLSDKRLVNEYRCDCEHSQCQCENPLLPGSKKPFSGDKIELLILKAKSNLEHCTEELPKSMKKDDSPCSLDKLEAERSWENIPVTFKSPVPVNSDDSPQQTSKAKYAKEFLEDFLNNDNQSCTLSGGKHHGPVEALKQMLFNLQAVQESFSQNKTTEPKGEIKQVSEDDFSKLQLKESMVPITRSLQKALHHLSRLRDLVDDTSGKQSPKM", "length": 531, "header": "tr|A0A480MY39-1|A0A480MY39_PIG Isoform 1 of Chromosome 1 C18orf54 homolog OS=Sus scrofa OX=9823 GN=C18orf54 PE=4 SV=1 CANONICAL=A0A480MY39-1" }, "locus": { "chromosome": "1", "start_pos": 103883203, "end_pos": 103865285, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054889.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054889.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058114.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058114.1" } ] } }, { "isoform_ac": "F1S1Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480MY39/entry#F1S1Z5-1", "sequence": { "sequence": "MAESNIKHRACSRESSVSSLLASCSLSGSNSTNSDGSFQYKDKLYSSASQALQAYIDDFDLSQMYPGAGTGKINIDKCSANMPEFSNYIYKPNNAFENLDDKKSSLSLYSREHTLNDIDSISLTTDDLLRLPADGSFPFTYIGSGHGISKKSKKRIGRLNSSVSEKNQNFQEPSTFMGKDNLVTPVVYTNVNGKQCGRLKNPKLVNKANKCVSVPSLYFSKKSSFRDSSEHSLEKNYPRWLTSQKSDLNVSGITSIPDFKYPVWLYNQDLLPDTNSQRISKIFEEDQYSPRHSYQAQRTSRLMNKLGCFEYSFEPSNISHSLSDKRLVNEYRCDCEHSQCQCENPLLPGSKKPFSGDKIELLILKAKSNLEHCTEELPKSMKKDDSPCSLDKLEAERSWENIPVTFKSPVPVNSDDSPQQTSKAKYAKEFLEDFLNNDNQSCTLSGGKHHGPVEALKQMLFNLQAVQESFSQNKTTEPKGEIKQVSEDDFSKLQLKESMVPITRSLQKGLKYGELTDMS", "length": 519, "header": "tr|F1S1Z5-1|A0A480MY39_PIG Computationally mapped isoform of Chromosome 1 C18orf54 homolog OS=Sus scrofa OX=9823 GN=C18orf54 PE=4 SV=3 CANONICAL=A0A480MY39-1" }, "locus": { "chromosome": "1", "start_pos": 103882416, "end_pos": 103865285, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005005.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005005.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004885.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004885.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S1Z5", "url": "https://www.uniprot.org/uniprotkb/F1S1Z5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TNL6-1", "protein_name": "Chromosome 24 C18orf54 homolog", "gene_name": "C24H18orf54", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAKSDTKHRVCSRQSSVSSLLSCNLSGSNSSNSGSFQYKDKLYSSASQALQAYIDDFDLSQMCLGASTGKINIDKCSANMPEFSNYICKPNNAFENLDDKRHLSLSYRGQTLNDIDSISLTTDDLLKLPADGSFSFTYFGSGHGSSKKNRKHIGRLSSSDREKKQNFQEPAALQGKDNLVTPLVYTNIKGRQCGRLKNPKLMNKANKSVSVPSLSFSKKLSFRDSSEHNLEKNYPRWLTSQKSDLNISGITSIPDFKYPVWLYNQDLLPDTDSQRIHQMSKEDQCSPRHSYQAQRTSRLMNKLDCFEYSFEPSCISHSLSEDKGLLNEYKCGPEPSRCLCENLLLPGSKKPFSGDKIELLILKAKRNLEHCTEELPKTMKKDDSPCSLDKLEAERSWENIPVTFKSPVPVNTDDSPQEIPKTKYANEFLEDFLNDDNQSCTLSGGKHHGPVEALKQMLFNLQAVQESFNQNKTAEPKGEIKQISEDDLSKVQLKESMAPITRSLQKALHHLSRLRDLVDDTSGKQSPKI", "length": 529 }, "evidence": [ { "id": "A0A480MY39", "url": "https://omabrowser.org/oma/group/A0A480MY39/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q66H35-1", "protein_name": "Lung adenoma susceptibility protein 2 homolog", "gene_name": "Las2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKLNTKHRVCSRESSISSLLASCSLSGSSGCSSDGSFQYKDQLYSSASEALQAYIDDFDLSRGHPGANTDKVNIDGEVGNGPHFSSCVLTPNNALANLDDKRHFNPLYYRRETINDMDSISLTTDDLLRLPADGCFSFSHVTSDHRQKKKSKKYIGRQDSLDIKDSPSFYAPKSKDNTLPPYVYTNINGKKCGDKIELLILKAKKNLKQSTEDLAKPVEKDDSPCSLDKLEAERTWENVPVTFKSPVPVKADDSPQQNSRTKCLEDFLNDCNQSSTLSGGKHHGPVEALKQMLFNLQAVQESFDQNKSTEPEERRKQVSEDDFSKLQMKENMIPITRSLHKALQHLSRLRDLVDDTSGRQSPKM", "length": 365 }, "evidence": [ { "id": "A0A480MY39", "url": "https://omabrowser.org/oma/group/A0A480MY39/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8CB14-1", "protein_name": "Lung adenoma susceptibility protein 2", "gene_name": "Las2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKLNTKLRGCSQESSVSSLLASGSLSGSRSDSAHSAHSSFVYKDQLYSSASEALQAYIDDFDLSREHPGANAVKVNTDGEIGNGLQFSSYVHIPDNAFVNLDPKQHFNPLYYRRETVNDMDAISLTTDDLLRLPADGCFSFPCVPPDHRPNKKYSGRQDSSDIKNSPSFYVDATSKSKNNIVPPYVYTNINGKKCGRPRTPKPINRENKCVSESSLSFPKESSFTEDSAERRLENYPRWLTSQKSDLSVSGVTSIPDVKYPIWLHNQDLLPEANTPRGYKLLNEDEYRPIHSYQTQRANQLLNKIDCFEYTFKPSNLTDSFSEYEGLGNEFKCQCDNPLLPGQSQKPFCGDKIELLILKAKKNLKQSAKDLPKPVEKDDSPCSLDKLEAERTWENVPVAFKSPVPVKADDSPQQSSRTQCVNAFLEDFLNGENQSSTLSGGKHHGPVEALKQMLFNLQTVQESFNKNKTTEPEEEIKQVSEDDLAKLQMKENMMPITRSLHKALQHLSRLRDLVDDTSGRQSPKK", "length": 526 }, "evidence": [ { "id": "A0A480MY39", "url": "https://omabrowser.org/oma/group/A0A480MY39/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IYD9-1", "protein_name": "Lung adenoma susceptibility protein 2", "gene_name": "LAS2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKSKTKHRLCSQESSVSALLASCTLSGSNSSNSDGSFHYKDKLYRSASQALQAYIDDFDLGQIYPGASTGKINIDEDFTNMSQFCNYIYKPNNAFENLDHKKHSNFISCRRHTVNDIDSMSLTTDDLLRLPADGSFSYTYVGPSHRTSKKNKKCRGRLGSLDIEKNPHFQGPYTSMGKDNFVTPVIRSNINGKQCGDKIELLILKAKRNLEQCTEELPKSMKKDDSPCSLDKLEADRSWENIPVTFKSPVPVNSDDSPQQTSRAKSAKGVLEDFLNNDNQSCTLSGGKHHGPVEALKQMLFNLQAVQERFNQNKTTDPKEEIKQVSEDDFSKLQLKESMIPITRSLQKALHHLSRLRDLVDDTNGERSPKM", "length": 372 }, "evidence": [ { "id": "A0A480MY39", "url": "https://omabrowser.org/oma/group/A0A480MY39/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" }, { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" }, { "start_pos": 317, "end_pos": 319, "annotation": "n_glycosylation_sequon" }, { "start_pos": 439, "end_pos": 441, "annotation": "n_glycosylation_sequon" }, { "start_pos": 473, "end_pos": 475, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 160, "end_pos": 162 }, { "start_pos": 249, "end_pos": 251 }, { "start_pos": 30, "end_pos": 32 }, { "start_pos": 317, "end_pos": 319 }, { "start_pos": 439, "end_pos": 441 }, { "start_pos": 473, "end_pos": 475 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", 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Transcript", "id": "ENSSSCT00000076508.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076508.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061771.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061771.1" } ] } }, { "isoform_ac": "A0A5G2RDW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A480YTU7/entry#A0A5G2RDW0-1", "sequence": { "sequence": 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"Ensembl Transcript", "id": "ENSSSCT00000089851.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089851.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072680.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072680.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDR1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-76061", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76061", "resource": "Reactome", "description": "RNA Polymerase III Transcription Initiation From Type 1 Promoter" }, { "id": "R-SSC-76066", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76066", "resource": "Reactome", "description": "RNA Polymerase III Transcription Initiation From Type 2 Promoter" }, { "id": "R-SSC-76071", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76071", "resource": "Reactome", "description": "RNA Polymerase III Transcription Initiation From Type 3 Promoter" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": 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"header": "tr|A0A287BCQ1-1|A0A287BRP8_PIG Computationally mapped isoform of Zinc finger protein 256 OS=Sus scrofa OX=9823 GN=LOC100514469 PE=3 SV=3 CANONICAL=A0A287BRP8-1" }, "locus": { "chromosome": "6", "start_pos": 62444031, "end_pos": 62441650, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059576.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059576.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054104.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054104.3" } ] } }, { "isoform_ac": "A0A287BRP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRP8/entry#A0A287BRP8-1", "sequence": { "sequence": 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BR50-1", "uniprot_ac": "A0A287BR50", "uniprot_id": "A0A287BR50_PIG", "mass": { "chemical_mass": 108112.0, "monoisotopic_mass": 108112.0 }, "refseq": {}, "gene_names": [ { "name": "TNPO3", "type": "recommended", "evidence": [ { "id": "A0A287BR50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BR50" } ] } ], "protein_names": [ { "name": "Transportin 3", "type": "synonym", "evidence": [ { "id": "A0A287BR50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BR50/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Importin, which transports target proteins into the nucleus. Specifically mediates the nuclear import of splicing factor serine/arginine (SR) proteins, such as RBM4, SFRS1 and SFRS2, by recognizing phosphorylated SR domains. Also mediates the nuclear import of serine/arginine (SR) protein CPSF6, independently of CPSF6 phosphorylation. The nuclear import process is regulated by the small GTPase Ran that partitions between cytoplasm and nucleus in the predominantly GDP- and GTP-bound form, respectively. Importin associates with target cargo proteins in the cytoplasm, and the competitive binding of GTP-bound Ran induces the release of cargos in the nucleus.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VUI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VUI2#function" }, { "database": "UniProtKB", "id": "ARBA00060097", "url": "https://www.uniprot.org/uniprotkb/ARBA00060097#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BR50", "url": "https://www.uniprot.org/uniprotkb/A0A287BR50" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TNPO3", "url": "https://www.uniprot.org/uniprotkb/A0A287BR50", "locus": { "chromosome": "18", "start_pos": 19673163, "end_pos": 19572776, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016572", "url": "https://www.ensembl.org/id/ENSSSCG00000016572" } ] } } ], "crossref": [ { "id": "A0A287BR50", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BR50", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016572", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016572", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515455", "url": "https://www.ncbi.nlm.nih.gov/gene/100515455", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057941", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057941", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058537", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058537", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VUI2", "url": "https://www.orthodb.org/?gene=A0A4X1VUI2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12363", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12363", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12363:SF42", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12363:SF42", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08389", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08389", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24138", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24138", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24139", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24139", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24140", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24140", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BIZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BR50", "url": "https://www.uniprot.org/uniprotkb/A0A287BR50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BR50-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR50-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VUI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VUI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VUI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VUI2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VZP3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VZP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGTKPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQDVESCYFAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKTNDEVIHGIFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFRMRVSDLVKDLIFLIGSMECFAQLYSTLKEGNPPWEVTEAVLFIMAAIAKSVDPKKHLSNDLCHCSLLFGQNLTSEVSNCEYLPSKLRENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYLMKGLCEKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIARSLDSFMLSPEAAVGLLKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEPSNGISSDPTVFLDRLAVIFRHTNPIVENGQTHPCQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIASTTLDHRDANCSVMRFLRDLIHTGVANDHEEDFELRKELIGQVMNQLGQQLVSQLLHTCCFCLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLPKETTVGAVTVTHKQLTDFHKQVTSAEECKQVCWALRDFTRLFR", "length": 957, "header": "tr|A0A287BR50-1|A0A287BR50_PIG Isoform 1 of Transportin 3 OS=Sus scrofa OX=9823 GN=TNPO3 PE=1 SV=1 CANONICAL=A0A287BR50-1" }, "isoforms": [ { "isoform_ac": "A0A287BIZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR50/entry#A0A287BIZ1-1", "sequence": { "sequence": "MEGTKPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQDVESCYFAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKTNDEVIHGIFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFRMRVSDLVKDLIFLIGSMECFAQGEQSNTRGGPRRSCPSPRDCTHSCAIHQH", "length": 451, "header": "tr|A0A287BIZ1-1|A0A287BR50_PIG Computationally mapped isoform of Transportin 3 OS=Sus scrofa OX=9823 GN=TNPO3 PE=1 SV=1 CANONICAL=A0A287BR50-1" }, "locus": { "chromosome": "18", "start_pos": 19638186, "end_pos": 19573140, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052750.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052750.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056500.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056500.1" } ] } }, { "isoform_ac": "A0A287BR50-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR50/entry#A0A287BR50-1", "sequence": { "sequence": "MEGTKPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQDVESCYFAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKTNDEVIHGIFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFRMRVSDLVKDLIFLIGSMECFAQLYSTLKEGNPPWEVTEAVLFIMAAIAKSVDPKKHLSNDLCHCSLLFGQNLTSEVSNCEYLPSKLRENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYLMKGLCEKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIARSLDSFMLSPEAAVGLLKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEPSNGISSDPTVFLDRLAVIFRHTNPIVENGQTHPCQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIASTTLDHRDANCSVMRFLRDLIHTGVANDHEEDFELRKELIGQVMNQLGQQLVSQLLHTCCFCLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLPKETTVGAVTVTHKQLTDFHKQVTSAEECKQVCWALRDFTRLFR", "length": 957, "header": "tr|A0A287BR50-1|A0A287BR50_PIG Isoform 1 of Transportin 3 OS=Sus scrofa OX=9823 GN=TNPO3 PE=1 SV=1 CANONICAL=A0A287BR50-1" }, "locus": { "chromosome": "18", "start_pos": 19669952, "end_pos": 19573140, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055796.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055796.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058996.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058996.2" } ] } }, { "isoform_ac": "A0A4X1VUI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR50/entry#A0A4X1VUI2-1", "sequence": { "sequence": "MKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKTNDEVIHGIFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFRMRVSDLVKDLIFLIGSMECFAQLYSTLKEGNPPWEVTEAVLFIMAAIAKSVDPENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYLMKGLCEKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIARSLDSFMLSPEAAVGLLKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEPSNGISSDPTVFLDRLAVIFRHTNPIVENGQTHPCQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIASTTLDHRDANCSVMRFLRDLIHTGVANDHEEDFELRKELIGQVMNQLGQQLVSQLLHTCCFCLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLPKETTVGAVTVTHKQLTDFHKQVTSAEECKQVCWALRDFTRLFR", "length": 857, "header": "tr|A0A4X1VUI2-1|A0A287BR50_PIG Computationally mapped isoform of Transportin 3 OS=Sus scrofa OX=9823 GN=TNPO3 PE=1 SV=1 CANONICAL=A0A287BR50-1" }, "locus": { "chromosome": "18", "start_pos": 19669952, "end_pos": 19603057, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056092.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056092.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048878.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048878.2" } ] } }, { "isoform_ac": "A0A4X1VZP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR50/entry#A0A4X1VZP3-1", "sequence": { "sequence": "MEGTKPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQDVESCYFAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKTNDEVIHGIFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFRMRVSDLVKDLIFLIGSMECFAQLYSTLKEGNPPWEVTEAVLFIMAAIAKSVDPENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVVDRNPQFLGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEPSNGISSDPTVFLDRLAVIFRHTNPIVENGQTHPCQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIASTTLDHRDANCSVMRFLRDLIHTGVANDHEEDFELRKELIGQVMNQLGQQLVSQLLHTCCFCLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLPKETTVGAVTVTHKQLTDFHKQVTSAEECKQVCWALRDFTRLFR", "length": 859, "header": "tr|A0A4X1VZP3-1|A0A287BR50_PIG Computationally mapped isoform of Transportin 3 OS=Sus scrofa OX=9823 GN=TNPO3 PE=1 SV=1 CANONICAL=A0A287BR50-1" }, "locus": { "chromosome": "18", "start_pos": 19669952, "end_pos": 19573140, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018042.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018042.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017556.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017556.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VUI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VUI2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein import into nucleus", "id": "GO:0006606", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006606", "evidence": [ { "database": "UniProtKB", "id": "A0A287BR50", "url": "https://www.uniprot.org/uniprotkb/A0A287BR50" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "A0A287BR50", "url": 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CANONICAL=A0A287BQP1-1" }, "locus": { "chromosome": "7", "start_pos": 96466633, "end_pos": 96417724, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057405.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057405.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058947.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058947.2" } ] } }, { "isoform_ac": "A0A5G2QKM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQP1/entry#A0A5G2QKM9-1", "sequence": { "sequence": 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"header": "tr|I3LLA0-1|A0A287BQP1_PIG Computationally mapped isoform of RNA-binding protein 25 OS=Sus scrofa OX=9823 GN=RBM25 PE=1 SV=4 CANONICAL=A0A287BQP1-1" }, "locus": { "chromosome": "7", "start_pos": 96466633, "end_pos": 96424959, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032106.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032106.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024867.4", "url": "https://www.ensembl.org/id/ENSSSCP00000024867.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BQZ7", "url": "https://www.uniprot.org/uniprotkb/A0A287BQZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTR6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTR6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAERLLIRALKGGKYTKIVTLNEKKVTKMPSVLERLPGLKTLDLQNNLIPKVCPEISTLTQLTTLNLGNNLLEEVPEEMKYLTSLKKLHLFGNRIHRFAPGACDGLQNLILLNLNNNQLTWIPQEIVRLKSLTYLSLNNNHLFSIPRELCFLETLSELQLNYNQLICIPEEIKFLKKLQKLLLSRNNIEYLPEGLCNLLNLRILDIAGNVIQMFPPGFQGLKLKEFYCEGNPLFLKQPVNAVKQEDVWSLQETASRFIMNQLAAKNPFLMQAIKWYPQVRSILSQGRKCAICGKYFLTTWLECVKFFPPSKNWKISRNLQFVPLRVLICSYKCFNQRDPNLFGIAQV", "length": 347, "header": "tr|A0A287BQZ7-1|A0A287BQZ7_PIG Isoform 1 of Leucine rich repeat containing 69 OS=Sus scrofa OX=9823 GN=LRRC69 PE=4 SV=1 CANONICAL=A0A287BQZ7-1" }, "isoforms": [ { "isoform_ac": "A0A287BQZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQZ7/entry#A0A287BQZ7-1", "sequence": { "sequence": "MAERLLIRALKGGKYTKIVTLNEKKVTKMPSVLERLPGLKTLDLQNNLIPKVCPEISTLTQLTTLNLGNNLLEEVPEEMKYLTSLKKLHLFGNRIHRFAPGACDGLQNLILLNLNNNQLTWIPQEIVRLKSLTYLSLNNNHLFSIPRELCFLETLSELQLNYNQLICIPEEIKFLKKLQKLLLSRNNIEYLPEGLCNLLNLRILDIAGNVIQMFPPGFQGLKLKEFYCEGNPLFLKQPVNAVKQEDVWSLQETASRFIMNQLAAKNPFLMQAIKWYPQVRSILSQGRKCAICGKYFLTTWLECVKFFPPSKNWKISRNLQFVPLRVLICSYKCFNQRDPNLFGIAQV", "length": 347, "header": "tr|A0A287BQZ7-1|A0A287BQZ7_PIG Isoform 1 of Leucine rich repeat containing 69 OS=Sus scrofa OX=9823 GN=LRRC69 PE=4 SV=1 CANONICAL=A0A287BQZ7-1" }, "locus": { "chromosome": "4", "start_pos": 45772266, "end_pos": 45673416, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057494.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057494.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058941.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058941.1" } ] } }, { "isoform_ac": "A0A5G2QTR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQZ7/entry#A0A5G2QTR6-1", "sequence": { "sequence": "MAERLLIRALKGGKYTKIVTLNEKKVTKMPSVLERLPGLKTLDLQNNLIPKVCPEISTLTQFQGLKLKEFYCEGNPLFLKQPVNAVKQEDVWSLQETASRFIMNQLAAKNPFLMQAIKWYPQVRSILSQGRKCAICGKYFLTTWLECVKFFPPSKNWKISRNLQFVPLRVLICSYKCFNQRDPNLFGIAQV", "length": 191, "header": "tr|A0A5G2QTR6-1|A0A287BQZ7_PIG Computationally mapped isoform of Leucine rich repeat containing 69 OS=Sus scrofa OX=9823 GN=LRRC69 PE=4 SV=1 CANONICAL=A0A287BQZ7-1" }, "locus": { "chromosome": "4", "start_pos": 45772266, "end_pos": 45673416, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099086.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099086.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081223.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081223.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTR6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTR6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A1W2Q6P1-1", "protein_name": "Leucine rich repeat containing 69", "gene_name": "Lrrc69", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVTSSKIMTERLLLTALKGGKSTKILTLNGKKMSKMPSALEKLPNLRTLDLQNNQISKVCPELRTLTKLTLLNLGNNLLQEVPEEIKYLTSLKNLHLFGNRICRIAAGVLDGLGDLVLLNLNDNQLSSLPPEIGRLQNLTFLSLNHNKLTVIPKEICFLEHLSELHINYNRITRIPEEIRFLQNLQQLSLVRNNIEELPEEVCQLTKLGVLDVAGNVIQIFPAGFQDLKLREFYCEGNPLFLKNPIFAPQPKDLWTLREIAARFVLSQLEEYNPLIMDAIECYPEVKDKLSKAKKCAICRKPFLSEWLECVYFVPPSKNWKISKNLQLIPLQTLVCSYQCFDRRDPDVFGIAKE", "length": 354 }, "evidence": [ { "id": "A0A287BQZ7", "url": "https://omabrowser.org/oma/group/A0A287BQZ7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6ZNQ3-1", "protein_name": "Leucine-rich repeat-containing protein 69", "gene_name": "LRRC69", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTERLLIKALSGGKNTKIITLNGKKMTKMPSALGKLPGLKTLVLQNNLIPKVCPELCNLTQLTTLNLGNNLLEEVPEEMKYLTSLKNLHLSGNRICRFAPGACDGLQNLILLNLNNNHLTQLPQEVSRLKSLTYMSINYNQLASIPRELCFLENLVELQLNYNQLICIPEEIKFLKKLQKLLLARNNIGVLPEELCDLKKLRILDIAGNIIQIFPSGFQDLKLREFYCEGNPLFLQQPVISTQQENVWSLQEITSRFVMNQLAENNPFLMDDIERYPQVRSMISQGKTCAICGQYFITVWLECVRFVPPPKDWKISKNLKLVPLQVLICSYKCFTQRDPNLFGIAQV", "length": 347 }, "evidence": [ { "id": "A0A287BQZ7", "url": "https://omabrowser.org/oma/group/A0A287BQZ7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D9Q0-1", "protein_name": "Leucine-rich repeat-containing protein 69", "gene_name": "Lrrc69", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAERLLVTALKGGKNTKILTLNGKRITKMPSTLEKLPNLKTLDLQNNSISKVCPELRTLTQLTLLNLGNNHLQEVPEEIKYLTSLKNLHLFGNRICRIAPGVFNGLHRLIMLNLNDNRLTSLPQEIGRLRSLTYLSLNRNNLTVIPKELCSLEHLSELHLNYNQIVYIPEEIKFLKNLQQLFLVRNNIEELPEEICHLEKLRVLDIAGNVIQIFPAGFQNLRLTEFYCEGNPLFLKRPFFAVQPKDLWTLREIAARFVLSLLEENDPLIMNVIESYPEVKDKLSKAKKCSICRKPFLTEWLECVYFVAPSKNWKISRNLKLIPVQTSVCSYQCFDQRDPDVFGIAQE", "length": 347 }, "evidence": [ { "id": "A0A287BQZ7", "url": "https://omabrowser.org/oma/group/A0A287BQZ7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A287BQZ7", "url": "https://www.uniprot.org/uniprotkb/A0A287BQZ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BQZ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 347, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BQZ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BQZ7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BR53-1", "uniprot_ac": "A0A287BR53", "uniprot_id": "A0A287BR53_PIG", "mass": { "chemical_mass": 25160.0, "monoisotopic_mass": 25160.0 }, "refseq": {}, "gene_names": [ { "name": "C18orf21", "type": "recommended", "evidence": [ { "id": "A0A287BR53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BR53" } ] } ], "protein_names": [ { "name": "Chromosome 6 C18orf21 homolog", "type": "synonym", "evidence": [ { "id": "A0A287BR53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BR53/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Specific component of the MRP ribonucleoprotein endoribonuclease, Rnase/Mrp complex, a ribonucleoprotein complex involved in pre-rRNA processing.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BR53", "url": "https://www.uniprot.org/uniprotkb/A0A287BR53#function" }, { "database": "UniProtKB", "id": "ARBA00094137", "url": "https://www.uniprot.org/uniprotkb/ARBA00094137#function" }, { "database": "UniProtKB", "id": "A0A5G2RLF3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLF3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BR53", "url": "https://www.uniprot.org/uniprotkb/A0A287BR53" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C18orf21", "url": "https://www.uniprot.org/uniprotkb/A0A287BR53", "locus": { "chromosome": "6", "start_pos": 119745317, "end_pos": 119735712, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030002", "url": "https://www.ensembl.org/id/ENSSSCG00000030002" } ] } } ], "crossref": [ { "id": "A0A287BR53", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BR53", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030002", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030002", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029779", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029779", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31402", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31402", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31402:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31402:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15719", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15719", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BR53", "url": "https://www.uniprot.org/uniprotkb/A0A287BR53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BR53-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR53-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RLF3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RLF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLF3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRQKHYLEAAAWKLQDSCPGQARYLLWAYSSSHDDKSTFEGTCPYCFQLLVPDKSRVRLKPKPKLTPKIQKLLNREARNYTLSFKEAKILEKYKESKSVLLITCKTCNRTVKHHGKSRSSLSAFKSNPSTPASKLSLKTPERKTLSSANLNPVMSGSKGKSPALNFRTPTSGQSTPISSSKNVNKTKKRFSQLKMLLSQSESEKNPKVDFRNFLSSLKDGLKK", "length": 223, "header": "tr|A0A287BR53-1|A0A287BR53_PIG Isoform 1 of Chromosome 6 C18orf21 homolog OS=Sus scrofa OX=9823 GN=C18orf21 PE=3 SV=2 CANONICAL=A0A287BR53-1" }, "isoforms": [ { "isoform_ac": "A0A287BR53-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR53/entry#A0A287BR53-1", "sequence": { "sequence": 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"id": "ENSSSCG00000037757", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037757", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027814", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027814", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR34833", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34833", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34833:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34833:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15123", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15123", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BR64", "url": "https://www.uniprot.org/uniprotkb/A0A287BR64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BR64-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR64-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MACVSSQDPVSTTVGKRMIFTGPDYVKDHLPKVAQHTSYIGEKRPELEKTGDLRYLWRPASNRSLPAKYKPEYVGEVGWGIPVYDFINRTRLQNGFHIKYEELSQAAIEKLSHRYQNPWQPNPSIMDAEGSFSRGSVAWHMGDYENTDQRNSKRAVLLRQSKSALPRAYRPPKLPKLPEKEKRRFP", "length": 186, "header": "tr|A0A287BR64-1|A0A287BR64_PIG Isoform 1 of Sperm microtubule inner protein 2 OS=Sus scrofa OX=9823 GN=SPMIP2 PE=4 SV=3 CANONICAL=A0A287BR64-1" }, "isoforms": [ { "isoform_ac": "A0A287BR64-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR64/entry#A0A287BR64-1", "sequence": { "sequence": "MACVSSQDPVSTTVGKRMIFTGPDYVKDHLPKVAQHTSYIGEKRPELEKTGDLRYLWRPASNRSLPAKYKPEYVGEVGWGIPVYDFINRTRLQNGFHIKYEELSQAAIEKLSHRYQNPWQPNPSIMDAEGSFSRGSVAWHMGDYENTDQRNSKRAVLLRQSKSALPRAYRPPKLPKLPEKEKRRFP", "length": 186, "header": "tr|A0A287BR64-1|A0A287BR64_PIG Isoform 1 of Sperm microtubule inner protein 2 OS=Sus scrofa OX=9823 GN=SPMIP2 PE=4 SV=3 CANONICAL=A0A287BR64-1" }, "locus": { "chromosome": "8", "start_pos": 47944239, "end_pos": 47829916, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050926.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050926.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058604.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058604.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BR64", "url": "https://www.uniprot.org/uniprotkb/A0A287BR64" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BR64-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 186, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BR64-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BR64" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 62, "end_pos": 64 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"protein_names": [ { "name": "Peptidoglycan recognition protein 4", "type": "synonym", "evidence": [ { "id": "A0A287BR76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BR76/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Pattern receptor that binds to murein peptidoglycans (PGN) of Gram-positive bacteria. Has bactericidal activity towards Gram-positive bacteria. May kill Gram-positive bacteria by interfering with peptidoglycan biosynthesis. Also binds to Gram-negative bacteria, and has bacteriostatic activity towards Gram-negative bacteria. Plays a role in innate immunity.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BR76", "url": "https://www.uniprot.org/uniprotkb/A0A287BR76#function" }, { "database": "UniProtKB", "id": "ARBA00053301", "url": "https://www.uniprot.org/uniprotkb/ARBA00053301#function" }, { "database": "UniProtKB", "id": "F1SFU8", "url": "https://www.uniprot.org/uniprotkb/F1SFU8#function" }, { "database": "UniProtKB", "id": "A0A5G2QVH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVH6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BR76", "url": "https://www.uniprot.org/uniprotkb/A0A287BR76" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PGLYRP4", "url": "https://www.uniprot.org/uniprotkb/A0A287BR76", "locus": { "chromosome": "4", "start_pos": 96261495, "end_pos": 96243118, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006587", "url": "https://www.ensembl.org/id/ENSSSCG00000006587" } ] } } ], "crossref": [ { "id": "A0A287BR76", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BR76", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006587", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006587", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06583", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06583", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006619", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006619", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015510", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015510", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036505", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036505", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "AREAHCP", "url": "https://omabrowser.org/oma/group/AREAHCP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11022", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11022", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11022:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11022:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11022:SF40", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11022:SF40", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01510", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01510", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6803157", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6803157", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BR76", "url": "https://www.uniprot.org/uniprotkb/A0A287BR76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BR76-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVH6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8K6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8K6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8K6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8K6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFU8", "url": "https://www.uniprot.org/uniprotkb/F1SFU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFU8-1", "url": "https://www.uniprot.org/uniprotkb/F1SFU8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLQWLLVFPALGLGVWGNSSWDETQAKHQSEGPQDLFGNISQLIDKGRLGFGGVSTVVSRKEWGADTVGCCAPLALPVDYLIMHHVPGLECHNQTGCSQRLRELRAHHVRNGWCDVAYNFLVGDDGRVYEGVGWTVQGVHTQGYNNVSLGLAFFGTKEGHSPSPAALLAVEGLISSAVWKGHLSAMYVQPLLVKGESCLNPQQNASHKEACPLIVLRSSWEARGTHCPKMSLRAKYVIISHTTGRTCNRSDECRVLVQDIQSFFMDKLDSCDVGYNFLVGQDGVIYEGVGWSVQGSHTPGYNDIALGLAFMGTFSDTPPNAAALEAAQNLIQCSVVRGYLDPNYLLVGHSDVANDPSPGRALYNIIKTWPHFRH", "length": 374, "header": "tr|A0A287BR76-1|A0A287BR76_PIG Isoform 1 of Peptidoglycan recognition protein 4 OS=Sus scrofa OX=9823 GN=PGLYRP4 PE=3 SV=1 CANONICAL=A0A287BR76-1" }, "isoforms": [ { "isoform_ac": "A0A287BR76-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR76/entry#A0A287BR76-1", "sequence": { "sequence": "MLQWLLVFPALGLGVWGNSSWDETQAKHQSEGPQDLFGNISQLIDKGRLGFGGVSTVVSRKEWGADTVGCCAPLALPVDYLIMHHVPGLECHNQTGCSQRLRELRAHHVRNGWCDVAYNFLVGDDGRVYEGVGWTVQGVHTQGYNNVSLGLAFFGTKEGHSPSPAALLAVEGLISSAVWKGHLSAMYVQPLLVKGESCLNPQQNASHKEACPLIVLRSSWEARGTHCPKMSLRAKYVIISHTTGRTCNRSDECRVLVQDIQSFFMDKLDSCDVGYNFLVGQDGVIYEGVGWSVQGSHTPGYNDIALGLAFMGTFSDTPPNAAALEAAQNLIQCSVVRGYLDPNYLLVGHSDVANDPSPGRALYNIIKTWPHFRH", "length": 374, "header": "tr|A0A287BR76-1|A0A287BR76_PIG Isoform 1 of Peptidoglycan recognition protein 4 OS=Sus scrofa OX=9823 GN=PGLYRP4 PE=3 SV=1 CANONICAL=A0A287BR76-1" }, "locus": { "chromosome": "4", "start_pos": 96258172, "end_pos": 96244254, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059284.2", "url": "https://www.ensembl.org/id/ENSSSCT00000059284.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058950.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058950.1" } ] } }, { "isoform_ac": "A0A5G2QVH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR76/entry#A0A5G2QVH6-1", "sequence": { "sequence": "RIQWDRCTLECSFAGNSSWDETQAKHQSEGPQDLFGNISQLIDKGRLGFGGVSTVVSRKEWGADTVGCCAPLALPVDYLIMHHVPGLECHNQTGCSQRLRELRAHHVRNGWCDVAYNFLVGDDGRVYEGVGWTVQGVHTQGYNNVSLGLAFFGTKEGHSPSPAALLAVEGLISSAVWKGHLSAMYVQPLLVKGESCLNPQQNASHKEACPLIVLRSSWEARGTHCPKMSLRAKYVIISHTTGRTCNRSDECRVLVQDIQSFFMDKLDSCDVGYNFLVGQDGVIYEGVGWSVQGSHTPGYNDIALGLAFMGTFSDTPPNAAALEAAQNLIQCSVVRGYLDPNYLLVGHSDVANDPSPGRALYNIIKTWPHFRH", "length": 372, "header": "tr|A0A5G2QVH6-1|A0A287BR76_PIG Computationally mapped isoform of Peptidoglycan recognition protein 4 OS=Sus scrofa OX=9823 GN=PGLYRP4 PE=3 SV=1 CANONICAL=A0A287BR76-1" }, "locus": { "chromosome": "4", "start_pos": 96258172, "end_pos": 96245591, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075234.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075234.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065953.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065953.1" } ] } }, { "isoform_ac": "A0A5G2R8K6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR76/entry#A0A5G2R8K6-1", "sequence": { "sequence": "MLQWLLVFPALGLGVWGNSSWDETQAKHQSEGPQDLFGNISQLIDKGRLGFGGVSTVVSRKEWGADTVGCCAPLALPVDYLIMHHVPGLECHNQTGCSQRLRELRAHHVRNGWCDVAYK", "length": 119, "header": "tr|A0A5G2R8K6-1|A0A287BR76_PIG Computationally mapped isoform of Peptidoglycan recognition protein 4 OS=Sus scrofa OX=9823 GN=PGLYRP4 PE=3 SV=1 CANONICAL=A0A287BR76-1" }, "locus": { "chromosome": "4", "start_pos": 96247355, "end_pos": 96244254, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076371.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076371.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073603.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073603.1" } ] } }, { "isoform_ac": "F1SFU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR76/entry#F1SFU8-1", "sequence": { "sequence": "MRGSRTTLSLSVSWDHVRMLQWLLVFPALGLGVWGNSSWDETQAKHQSEGPQDLFGNISQLIDKGRLGFGGVSTVVSRKEWGADTVGCCAPLALPVDYLIMHHVPGLECHNQTGCSQRLRELRAHHVRNGWCDVAYNFLVGDDGRVYEGVGWTVQGVHTQGYNNVSLGLAFFGTKEGHSPSPAALLAVEGLISSAVWKGHLSAMYVQPLLVKGESCLNPQQNASHKEACPLIVLRSSWEARGTHCPKMSLRAKYVIISHTTGRTCNRSDECRVLVQDIQSFFMDKLDSCDVGYNFLVGQDGVIYEGVGWSVQGSHTPGYNDIALGLAFMGTFSDTPPNAAALEAAQNLIQCSVVRGYLDPNYLLVGHSDVANDPSPGRALYNIIKTWPHFRH", "length": 392, "header": "tr|F1SFU8-1|F1SFU8_PIG Computationally mapped isoform of Peptidoglycan recognition protein 4 OS=Sus scrofa OX=9823 GN=PGLYRP4 PE=3 SV=2 CANONICAL=A0A287BR76-1" }, "locus": { "chromosome": "4", "start_pos": 96258172, "end_pos": 96243646, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007216.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007216.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007022.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007022.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVH6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6803157", "name": "", "url": 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"ENSSSCG00000005599", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005599", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152056", "url": "https://www.ncbi.nlm.nih.gov/gene/100152056", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052124", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052124", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CTPGSIW", "url": "https://omabrowser.org/oma/group/CTPGSIW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BR94", "url": "https://www.orthodb.org/?gene=A0A287BR94", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SKQ3", "url": "https://www.orthodb.org/?gene=F1SKQ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46647", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46647", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46647:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46647:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6811440", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005654596", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654596", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BR94", "url": "https://www.uniprot.org/uniprotkb/A0A287BR94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BR94-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR94-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKQ3", "url": "https://www.uniprot.org/uniprotkb/F1SKQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKQ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SKQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKQLPVLEPGDKPRKATWYTLTPTGDSPCARVGHSCSYLPPVGDSKRGKVFIVGGANPNRSFSDVHTMDLGTHQWDLTTSEGLLPRYEHASFVPSCAPHSIWVFGGADQSGNRNCLQVLNPETRTWTMPEVTSPPPSPRTFHTSSSVIGNQLYVFGGGERGAQPVQDVKLHVFDANTLTWSQPETLGEPPSPRHGHVMVAAGTKLFIHGGLAGDKFYDDLHCIDINDMKWQKLSPTGAAPTGCAAHSAVTVGKHVYIFGGMTPTGALDTMYQYHIEKQHWTLLKFDSFLPPGRLDHAMCIIPWAERCTSEKNSNSAVLNCDAEKGNSTEKGVTQDDDSQERQSDTLLCFVFGGMNTEGEIYNDCIVTVVD", "length": 370, "header": "tr|A0A287BR94-1|A0A287BR94_PIG Isoform 1 of Rab9 effector protein with kelch motifs OS=Sus scrofa OX=9823 GN=RABEPK PE=1 SV=1 CANONICAL=A0A287BR94-1" }, "isoforms": [ { "isoform_ac": "A0A287BR94-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR94/entry#A0A287BR94-1", "sequence": { "sequence": "MKQLPVLEPGDKPRKATWYTLTPTGDSPCARVGHSCSYLPPVGDSKRGKVFIVGGANPNRSFSDVHTMDLGTHQWDLTTSEGLLPRYEHASFVPSCAPHSIWVFGGADQSGNRNCLQVLNPETRTWTMPEVTSPPPSPRTFHTSSSVIGNQLYVFGGGERGAQPVQDVKLHVFDANTLTWSQPETLGEPPSPRHGHVMVAAGTKLFIHGGLAGDKFYDDLHCIDINDMKWQKLSPTGAAPTGCAAHSAVTVGKHVYIFGGMTPTGALDTMYQYHIEKQHWTLLKFDSFLPPGRLDHAMCIIPWAERCTSEKNSNSAVLNCDAEKGNSTEKGVTQDDDSQERQSDTLLCFVFGGMNTEGEIYNDCIVTVVD", "length": 370, "header": "tr|A0A287BR94-1|A0A287BR94_PIG Isoform 1 of Rab9 effector protein with kelch motifs OS=Sus scrofa OX=9823 GN=RABEPK PE=1 SV=1 CANONICAL=A0A287BR94-1" }, "locus": { "chromosome": "1", "start_pos": 265929037, "end_pos": 265907147, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063390.1", "url": "https://www.ensembl.org/id/ENSSSCT00000063390.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038013.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038013.1" } ] } }, { "isoform_ac": "F1SKQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR94/entry#F1SKQ3-1", "sequence": { "sequence": "MKQLPVLEPGDKPRKATWYTLTPTGDSPCARVGHSCSYLPPVGDSKRGKVFIVGGANPNRSFSDVHTMDLETRTWTMPEVTSPPPSPRTFHTSSSVIGNQLYVFGGGERGAQPVQDVKLHVFDANTLTWSQPETLGEPPSPRHGHVMVAAGTKLFIHGGLAGDKFYDDLHCIDINDMKWQKLSPTGAAPTGCAAHSAVTVGKHVYIFGGMTPTGALDTMYQYHIEKQHWTLLKFDSFLPPGRLDHAMCIIPWAERCTSEKNSNSAVLNCDAEKGNSTEKGVTQDDDSQERQSDTLLCFVFGGMNTEGEIYNDCIVTVVD", "length": 319, "header": "tr|F1SKQ3-1|A0A287BR94_PIG Computationally mapped isoform of Rab9 effector protein with kelch motifs OS=Sus scrofa OX=9823 GN=RABEPK PE=1 SV=2 CANONICAL=A0A287BR94-1" }, "locus": { "chromosome": "1", "start_pos": 265929037, "end_pos": 265907147, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006157.3", "url": "https://www.ensembl.org/id/ENSSSCT00000006157.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005998.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005998.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 250, "start_aa": "Thr", "end_pos": 250, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr250", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKQ3", "url": "https://www.uniprot.org/uniprotkb/F1SKQ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6811440", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "resource": "Reactome", "description": "Retrograde transport at the Trans-Golgi-Network" } ], "orthologs": [ { "uniprot_canonical_ac": "G3I8S0-1", "protein_name": "Rab9 effector protein with kelch motifs", "gene_name": "Rabepk", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKQLPVLEPGDKPRKATWYTLTRPGDKPCPRVGHSCSYLPPAGDAKRGKVFIVGGANPNQSFSDVHIMDLGTQQWDTVTTEGLLPRYEHASFIPSCTPHSIWVFGGADQSGNRNCLQVLDPETRTWTTPEVSSPPPSPRTFHTSAAAIGNQLYVFGGGERGDQPVQDVKLHVFDANTLMWSQPETHGSPPSARHGHVMVATGTKLFVHGGLSGDKFFDDLHCIDISNMKWQKLSPTGAVPAGCAAHAAVAVGKHVYMFGGMTPSGALNTMYKYHTEKQHWTSLQFDTFLPPGRLDHSMCVIPWPVMSTSENEDSDSVILKCEAEKGDAADIQVAQGGGLPEESQTNMLLCFVFGGMNTEGEIYDDCFVTVVD", "length": 372 }, "evidence": [ { "id": "A0A287BR94", "url": "https://omabrowser.org/oma/group/A0A287BR94/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q4V8F4-1", "protein_name": "Rab9 effector protein with kelch motifs", "gene_name": "Rabepk", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKQLPILEPGDKPRKAAWYTLTCPGDKPCPRVGHSCSYFPPVGEAEKGKVFIVGGANPNQSFSDVHTMDLGTHRWDTATREGLLPRYEHASFLPSCSPHSIWVFGGADQSGNRNCLQVMNPEARTWSTPEVTGCPPSPRTFHTSSAAIGNHLYVFGGGERGAQPVQDVKLHVFDANTLTWAQPETHGSPPSPRHGHAMVAAGTKLFIHGGLAGDRFFDDLHCIDIGDMSWQKLGPTGTAPVGCAAHAAVAVGHHVYVFGGMTATGALNTMYKYHTEKQHWTILQFDTSLPPGRLDHSMCVIPWPVMSASDTEDSGSVILSLQDEKGDAAEKPETRSGGSREESPTTLLLCFVFGGMNTEGEIYDDCLVTVVD", "length": 372 }, "evidence": [ { "id": "A0A287BR94", "url": "https://omabrowser.org/oma/group/A0A287BR94/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5EA50-1", "protein_name": "Rab9 effector protein with kelch motifs", "gene_name": "RABEPK", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKQLPVLEPGDKPRKETWYTLTLVGDSPCARVGHSCSYLPPVGDAERGKVFIVGGADPNRSFSDVHTIDLGTHQWDLATSEGLLPRYEHTSFIPSCTPHSIWVFGGADQSGNRNCLQVLNPDTRTWTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGGGERGAQPVQDVQLHVFDANTLTWSQPETHGKPPSPRHGHVMVAAGTKLFIHGGLAGDNFYDDLHCIDISDMKWQKLRPTGAAPTGCAAHSAVAVGKHLYVFGGMTPTGALNTMYQYHIEKQHWTLLKFENSPPTGRLDHSMCIIPWPGTCTSEKEDSNSATVNRDAEKGDSTEKGVTQGGDSQEESQADTLLCFVFGGMNTEGEIYDDCIVTAVD", "length": 372 }, "evidence": [ { "id": "A0A287BR94", "url": "https://omabrowser.org/oma/group/A0A287BR94/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6GQN7-1", "protein_name": "Rab9 effector protein with kelch motifs", "gene_name": "rabepk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MELIPVLEPEQKPQNRHWYVLEPTGAAPGVSVGHTCSFLPAAHHHDEDGGGKGKIVIVGGANPSGSFADSYIINLDTHQWDLPDWEGLQARYEHCSFTPESEPQSLWVFGGAEKSTNRNCVQALRFSDGGEGRRFWQSVQVTGVPPSGRTYHTNSACVGNRLFVFSGGEAGSSAVTDAQLHVFDAVSVTWTQPDTTGTPPAQRHGHVITAVGSDIYIHGGMSGEKFHSDMFTLNTESLKWQKVKAKGDLPPGVAAHSSVTFNKNIFIFGGMTADGATNSMFKFQCDKQRWTLLKFEGDLPPGRLDHSMCLLPWRVKMEDSEHADVQHLCFVFGGMDTQGVIFNDCLVTVLT", "length": 351 }, "evidence": [ { "id": "A0A287BR94", "url": "https://omabrowser.org/oma/group/A0A287BR94/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7Z6M1-1", "protein_name": "Rab9 effector protein with kelch motifs", "gene_name": "RABEPK", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFSDVHTMDLGKHQWDLDTCKGLLPRYEHASFIPSCTPDRIWVFGGANQSGNRNCLQVLNPETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMTPAGALDTMYQYHTEEQHWTLLKFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLCLVFGGMNTEGEIYDDCIVTVVD", "length": 372 }, "evidence": [ { "id": "A0A287BR94", "url": "https://omabrowser.org/oma/group/A0A287BR94/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VCH5-1", "protein_name": "Rab9 effector protein with kelch motifs", "gene_name": "Rabepk", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRGLRQGIMKQLPILEPGDKPRKATWYTLTCPGDRPCPRVGHSCSYFPPVGDAESGKIFIVGGANPNQSFSDVHTMDLGTHQWDTATREGLLPRYEHASFLPSCSPHSIWVFGGADQSGNRNCLQVMSPEDRTWSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVEDVKLHVFDANTLTWSQPETHGSPPSPRHGHVMVAAGTKLFIHGGLAGDKFFDDLHCIDIGDMSWQKLGPTGAVPVGCAAHAAVAVGHHVYMFGGMTATGALNMMYKYHTEKQHWTVLQFDTSLPAGRLDHSMCVIPWPVMSTSENKDSDSVILTLQDEKGDAAEKAETQSGGPHEESPTTVLLCFVFGGMNTEGEVYDDCLVTVVD", "length": 380 }, "evidence": [ { "id": "A0A287BR94", "url": "https://omabrowser.org/oma/group/A0A287BR94/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 326, "end_pos": 328, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BR94-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 370, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BR94-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BR94" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 250 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 326, "end_pos": 328 }, { "start_pos": 59, "end_pos": 61 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BRA0-1", "uniprot_ac": "A0A287BRA0", "uniprot_id": "A0A287BRA0_PIG", "mass": { "chemical_mass": 52641.0, "monoisotopic_mass": 52641.0 }, "refseq": { "ac": "XP_005659312", "name": "opioid growth factor receptor-like protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659312" }, "gene_names": [ { "name": "OGFRL1", "type": "recommended", "evidence": [ { "id": "A0A287BRA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BRA0" } ] }, { "name": "OGFRL1", "type": "synonym", "evidence": [ { "id": "XP_005659312", "database": 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"MGNLFGGVSAREPTTVEDCDSTWQTDSEPEPEPEPEPEEPGPGGSEGPGREPVQAPESAEPPETPERAGGRPRASPAPDGDAEAEGAEQGSESTEATAKPKRSFYAARDLYKYRHQYPQNFKDIRYQNDLSNLRFYKNKIPFKPDGVYIEEVLNKWKGDYEKLEHNHTYIQWLFPLREQGLNFYAKELTTYEIEEFKKTKEAIRRFLLAYKMMLEFFGIKLIDKTGNVARAVNWQERFQHLNESQHNYLRITRILKSLGELGYESFKSPLVKFILHEALVENTIPNIKQSALEYFVYTIRDRRERRKLLRFAQKHYTPSENFIWGPPRKEQSEGIKAPKTPAPPSSGHHSQMSMHKKSKDSKTSSSAVHVNSKTPEDKKVAPREPGEEADGPSEEPGSEASGPGNTEVDRDADRSTSQPEKTVVHPLEKRESASSSEKDEESENHNKDCESPGDTGSQDDTLLQ", "length": 464, "header": "tr|A0A287BRA0-1|A0A287BRA0_PIG Isoform 1 of Opioid growth factor receptor like 1 OS=Sus scrofa OX=9823 GN=OGFRL1 PE=1 SV=2 CANONICAL=A0A287BRA0-1" }, "isoforms": [ { "isoform_ac": "A0A287BRA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRA0/entry#A0A287BRA0-1", "sequence": { "sequence": "MGNLFGGVSAREPTTVEDCDSTWQTDSEPEPEPEPEPEEPGPGGSEGPGREPVQAPESAEPPETPERAGGRPRASPAPDGDAEAEGAEQGSESTEATAKPKRSFYAARDLYKYRHQYPQNFKDIRYQNDLSNLRFYKNKIPFKPDGVYIEEVLNKWKGDYEKLEHNHTYIQWLFPLREQGLNFYAKELTTYEIEEFKKTKEAIRRFLLAYKMMLEFFGIKLIDKTGNVARAVNWQERFQHLNESQHNYLRITRILKSLGELGYESFKSPLVKFILHEALVENTIPNIKQSALEYFVYTIRDRRERRKLLRFAQKHYTPSENFIWGPPRKEQSEGIKAPKTPAPPSSGHHSQMSMHKKSKDSKTSSSAVHVNSKTPEDKKVAPREPGEEADGPSEEPGSEASGPGNTEVDRDADRSTSQPEKTVVHPLEKRESASSSEKDEESENHNKDCESPGDTGSQDDTLLQ", "length": 464, "header": "tr|A0A287BRA0-1|A0A287BRA0_PIG Isoform 1 of Opioid growth factor receptor like 1 OS=Sus scrofa OX=9823 GN=OGFRL1 PE=1 SV=2 CANONICAL=A0A287BRA0-1" }, "locus": { "chromosome": "1", "start_pos": 51325933, "end_pos": 51313134, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060364.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060364.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059160.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059160.2" } ] } }, { "isoform_ac": "A0A5G2QMJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRA0/entry#A0A5G2QMJ5-1", "sequence": { "sequence": "MEALLTACQGSESTEATAKPKRSFYAARDLYKYRHQYPNFKDIRYQNDLSNLRFYKNKIPFKPDGVYIEEVLNKWKGDYEKLEHNHTYIQWLFPLREQGLNFYAKELTTYEIEEFKKTKEAIRRFLLAYKMMLEFFGIKLIDKTGNVARAVNWQERFQHLNESQHNYLRITRILKSLGELGYESFKSPLVKFILHEALVENTIPNIKQSALEYFVYTIRDRRERRKLLRFAQKHYTPSENFIWGPPRKEQSEGIKAPKTPAPPSSGHHSQMSMHKKSKDSKTSSSAVHVNSKTPEDKKVAPREPGEEADGPSEEPGSEASGPGNTEVDRDADRSTSQPEKTVVHPLEKRESASSSEKDEESENHNKDCESPGDTGSQDDTLLQ", "length": 383, "header": "tr|A0A5G2QMJ5-1|A0A287BRA0_PIG Computationally mapped isoform of Opioid growth factor receptor like 1 OS=Sus scrofa OX=9823 GN=OGFRL1 PE=1 SV=2 CANONICAL=A0A287BRA0-1" }, "locus": { "chromosome": "1", "start_pos": 51325933, "end_pos": 51316247, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090964.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090964.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065869.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065869.2" } ] } }, { "isoform_ac": "F1RTS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRA0/entry#F1RTS8-1", "sequence": { "sequence": "MGNLFGGVSAREPTTVEDCDSTWQTDSEPEPEPEPEPEEPGPGGSEGPETPERAGGRPRASPAPDGDAEAEGAEQGSESTEATAKPKRSFYAARDLYKYRHQYPNFKDIRYQNDLSNLRFYKNKIPFKPDGVYIEEVLNKWKGDYEKLEHNHTYIQWLFPLREQGLNFYAKELTTYEIEEFKKTKEAIRRFLLAYKMMLEFFGIKLIDKTGNVARAVNWQERFQHLNESQHNYLRITRILKSLGELGYESFKSPLVKFILHEALVENTIPNIKQSALEYFVYTIRDRRERRKLLRFAQKHYTPSENFIWGPPRKEQSEGIKAPKTPAPPSSGHHSQMSMHKKSKDSKTSSSAVHVNSKTPEDKKVAPREPGEEADGPSEEPGSEASGPGNTEVDRDADRSTSQPEKTVVHPLEKRESASSSEKDEESENHNKDCESPGDTGSQDDTLLQ", "length": 449, "header": "tr|F1RTS8-1|A0A287BRA0_PIG Computationally mapped isoform of Opioid growth factor receptor like 1 OS=Sus scrofa OX=9823 GN=OGFRL1 PE=1 SV=4 CANONICAL=A0A287BRA0-1" }, "locus": { "chromosome": "1", "start_pos": 51325933, "end_pos": 51313134, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004729.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004729.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004620.4", "url": "https://www.ensembl.org/id/ENSSSCP00000004620.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": 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{ "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BRA0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 464, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BRA0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BRA0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BRA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BRA0" }, { "id": "PF04664", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04664" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Opioid growth factor receptor (OGFr) conserved", "eco_id": "ECO_0000259", "start_pos": 127, "end_pos": 331, "start_aa": "Gln", 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480NUY6-1", "uniprot_ac": "A0A480NUY6", "uniprot_id": "A0A480NUY6_PIG", "mass": { "chemical_mass": 83858.0, "monoisotopic_mass": 83858.0 }, "refseq": {}, "gene_names": [ { "name": "BCLAF3", "type": "recommended", "evidence": [ { "id": "A0A480NUY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480NUY6" } ] } ], "protein_names": [ { "name": "BCLAF1 and THRAP3 family member 3", "type": "synonym", "evidence": [ { "id": "A0A480NUY6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480NUY6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480NUY6", "url": "https://www.uniprot.org/uniprotkb/A0A480NUY6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BCLAF3", "url": "https://www.uniprot.org/uniprotkb/A0A480NUY6", "locus": { "chromosome": "X", "start_pos": 16252420, "end_pos": 16312439, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023334", "url": "https://www.ensembl.org/id/ENSSSCG00000023334" } ] } } ], "crossref": [ { "id": "ENSSSCG00000023334", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023334", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100624439", "url": "https://www.ncbi.nlm.nih.gov/gene/100624439", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029199", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029199", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100624439", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624439", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KWHEDEF", "url": "https://omabrowser.org/oma/group/KWHEDEF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480NUY6", "url": "https://www.orthodb.org/?gene=A0A480NUY6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15268", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15268", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15268:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15268:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15440", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15440", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BRF0", "url": "https://www.uniprot.org/uniprotkb/A0A287BRF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRF0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480NUY6", "url": "https://www.uniprot.org/uniprotkb/A0A480NUY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480NUY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480NUY6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LEY8", "url": "https://www.uniprot.org/uniprotkb/I3LEY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LEY8-1", "url": "https://www.uniprot.org/uniprotkb/I3LEY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARSRSRSPRWKHRSLSPVPRSSEHYKQRHEHYGYEYRKDPKRPIAWRMDNEKHGQSKPRIPSRENTHYRSYEHRSPSPNLRRNSLENFYTYKPPQVYLPGRGDSNRRSQYMPKYSEGVLYKEHQRNCYPQKVQGRYIPDDHRVRGSGKGGKPPLRSIADSFRFEGQWHEDELRHQRIQDEKYSQSLRRGSEDFEKRSSFQKRYPEDRDFRKYGHTSKRPEDVERFENREAARSPQWKPRHFLPPYQEKKDQRNLGLQTHRHAPRELPESSSAAKVSCDYRHKHRKSSDGDQDFNDGRTQKYSKEEDRKFGSQKGPVARESSCSNAGRGRVTEDGQVKEPLKPSKKDCASSTHSNKSDVDLRPCNDKRKDKVKKEGAGRKESNSSHNQLDKGKKLSDMKASSAILRKKSLTVKVDVKKAVNTSRVASSYSTERQMSHDLVAVGRKSENFHPVFEHLDSTQNTENKPTGEFAQEIITIIHQVKANYFPSPKITLHERFSQMQDTQAADVNEIKLNSDPEIHRRIDMSLAELQSKQTMVYDSEQTLVKIIDPNDLRHDIERRRKERLQNEDEHIFHIASAAERSDQHSNFSRLKNTHIDGFQKPTCFVKSNFRKFIQKPYLNYHTIQRKDVVTHKPFGVEGNHQNTRGFRRPFKTNFRGGRFQPQYKSGLVQKSLYIQAKYQRLRFAGPRGFITNKFRERLLRKKKEYTNIAPAI", "length": 713, "header": "tr|A0A480NUY6-1|A0A480NUY6_PIG Isoform 1 of BCLAF1 and THRAP3 family member 3 OS=Sus scrofa OX=9823 GN=BCLAF3 PE=3 SV=1 CANONICAL=A0A480NUY6-1" }, "isoforms": [ { "isoform_ac": "A0A287BRF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A480NUY6/entry#A0A287BRF0-1", "sequence": { "sequence": "MARSRSRSPRWKHRSLSPVPRSSEHYKQRHEHYGYEYRKDPKRPIAWRMDNEKHGQSKPRIPSRENTHYRSYEHRSPSPNLRRNSLENFYTYKPPQVYLPGRGDSNRRSQYMPKYSEGVLYKEHQRNCYPQKVQGRYIPDDHRVRGSGKGGKPPLRSIADSFRFEGQWHEDELRHQRIQDEKYSQSLRRGSEDFEKRSSFQKRYPEDRDFRKYGHTSKRPEDVERFENREAARSPQWKPRHFLPPYQEKKDQRNLGLQTHRHAPRELPESSSAAKVSCDYRHKHRKSSDGDQDFNDGRTQKYSKEEDRKFGSQKGPVARESSCSNAGRGRVTEDGQVKEPLKPSKKDCASSTHSNKSDVDLRPCNDKRKDKVKKEGAGRKESNSSHNQLDKGKKLSDMKASSAILRKKSLTVKVDVKKAVNTSRKSENFHPVFEHLDSTQNTENKPTGEFAQEIITIIHQVKANYFPSPKITLHERFSQMQDTQAADVNEIKLNSDPEIHRRIDMSLAELQSKQTMVYDSEQTLVKIIDPNDLRHDIERRRKERLQNEDEHIFHIASAAERSDQHSNFSRLKNTHIDGFQKPTCFVKSNFRKFIQKPYLNYHTIQRKDVVTHKPFGVEGNHQNTRGFRRPFKTNFRGGRFQPQYKSGLVQKSLYIQAKYQRLRFAGPRGFITNKFRERLLRKKKEYTNIAPAI", "length": 693, "header": "tr|A0A287BRF0-1|A0A480NUY6_PIG Computationally mapped isoform of BCLAF1 and THRAP3 family member 3 OS=Sus scrofa OX=9823 GN=BCLAF3 PE=3 SV=3 CANONICAL=A0A480NUY6-1" }, "locus": { "chromosome": "X", "start_pos": 16300962, "end_pos": 16253444, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053769.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053769.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058752.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058752.3" } ] } }, { "isoform_ac": "A0A480NUY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480NUY6/entry#A0A480NUY6-1", "sequence": { "sequence": "MARSRSRSPRWKHRSLSPVPRSSEHYKQRHEHYGYEYRKDPKRPIAWRMDNEKHGQSKPRIPSRENTHYRSYEHRSPSPNLRRNSLENFYTYKPPQVYLPGRGDSNRRSQYMPKYSEGVLYKEHQRNCYPQKVQGRYIPDDHRVRGSGKGGKPPLRSIADSFRFEGQWHEDELRHQRIQDEKYSQSLRRGSEDFEKRSSFQKRYPEDRDFRKYGHTSKRPEDVERFENREAARSPQWKPRHFLPPYQEKKDQRNLGLQTHRHAPRELPESSSAAKVSCDYRHKHRKSSDGDQDFNDGRTQKYSKEEDRKFGSQKGPVARESSCSNAGRGRVTEDGQVKEPLKPSKKDCASSTHSNKSDVDLRPCNDKRKDKVKKEGAGRKESNSSHNQLDKGKKLSDMKASSAILRKKSLTVKVDVKKAVNTSRVASSYSTERQMSHDLVAVGRKSENFHPVFEHLDSTQNTENKPTGEFAQEIITIIHQVKANYFPSPKITLHERFSQMQDTQAADVNEIKLNSDPEIHRRIDMSLAELQSKQTMVYDSEQTLVKIIDPNDLRHDIERRRKERLQNEDEHIFHIASAAERSDQHSNFSRLKNTHIDGFQKPTCFVKSNFRKFIQKPYLNYHTIQRKDVVTHKPFGVEGNHQNTRGFRRPFKTNFRGGRFQPQYKSGLVQKSLYIQAKYQRLRFAGPRGFITNKFRERLLRKKKEYTNIAPAI", "length": 713, "header": "tr|A0A480NUY6-1|A0A480NUY6_PIG Isoform 1 of BCLAF1 and THRAP3 family member 3 OS=Sus scrofa OX=9823 GN=BCLAF3 PE=3 SV=1 CANONICAL=A0A480NUY6-1" }, "locus": { "chromosome": "X", "start_pos": 16300962, "end_pos": 16253444, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049332.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049332.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053524.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053524.2" } ] } }, { "isoform_ac": "I3LEY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480NUY6/entry#I3LEY8-1", "sequence": { "sequence": "MARSRSRSPRWKHRSLSPVPRSSEHYKQRHEHYGYEYRKDPKRPIAWRMDNEKHGQSKPRIPSRENTHYRSYEHRSPSPNLRRNSLENFYTYKPPQVYLPGRGDSNRRSQYMPKYSEGVLYKEHQRNCYPQKVQGRYIPDDHRVRGSGKGGKPPLRSIADSFRFEGQWHEDELRHQRIQDEKYSQSLRRGSEDFEKRSSFQKRYPEDRDFRKYGHTSKRPEDVERFENREAARSPQWKPRHFLPPYQEKKDQRNLGLQTHRHAPRELPESSSAAKVSCDYRHKHRKSSDGDQDFNDGRTQKYSKEEDRKFGSQKGPVARESSCSNAGRGRVTEDGQVKEPLKPSKKDCASSTHSNKSDVDLRPCNDKRKDKVKKEGAGRKESNSSHNQLDKGKKLSDMKASSAILRKKSLTVKVDVKKAVNTSRKSENFHPVFEHLDSTQNTENKPTGEFAQEIITIIHQVKANYFPSPKITLHERFSQMQDTQAADVNEIKLNSDPEIHRRIDMSLAELQSKQTMVYDSEQTLVKIIDPNDLRHDIERRRKERLQNEDEHIFHIASAAERSDQHSNFSRLKNTHIDGFQKPTCFVKSNFRKFIQKPYLTNFRGGRFQPQYKSGLVQKSLYIQAKYQRLRFAGPRGFITNKFRERLLRKKKEYTNIAPAI", "length": 660, "header": "tr|I3LEY8-1|A0A480NUY6_PIG Computationally mapped isoform of BCLAF1 and THRAP3 family member 3 OS=Sus scrofa OX=9823 GN=BCLAF3 PE=3 SV=3 CANONICAL=A0A480NUY6-1" }, "locus": { "chromosome": "X", "start_pos": 16300962, "end_pos": 16253444, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029969.3", "url": "https://www.ensembl.org/id/ENSSSCT00000029969.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022627.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022627.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LEY8", "url": "https://www.uniprot.org/uniprotkb/I3LEY8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624439", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624439", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LX15-1", "protein_name": "BCLAF1 and THRAP3 family member 3", "gene_name": "BCLAF3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MARSRSRSPRWRHRSLSPVPRSSEHYKQRFEHYGYDYRKDPKRPITWRMDDEKYGQSKPRISSHENIQYRSYEHRSPSPNIRGNSSEKFYTYKPPQVYLPERGDDSNRRAQYVPRHSEGMFYREHQRSCYPQKAQGRYIPDDRRNRRSEKGGTPPVRSTTDSFRFEGHWHEAEPRYQRIQDEKYSQSLRRGSEDFEKRISFQKRYPEDHDFRKYGHTSKRPHDVERYENREPARSPQWKSRHFSAPYQEKKDQRNLETQTYRYAPREFPETSSAAKVSCDSRHKYRKTSDGDKDFYDERAQKYPKEEDRKLGSQKGPVNRESSCSHAGRGRETEGGQVKESSKPSKKDCAALTHSDKSDVDLRSCKDTRKDKIKKERAGSKESSSSSNQLDNSDSDLKPSSVFLKKKSLTVKVDVQQGQNKSRVASSYSTERQMSHDLVAVGRKSEKFHPVFEHLDSTQNTENKPTGEFAQQIITIIHQVKANYFPPSEITLHERFSKIQVKKAADANETKLSSDPEIHRRIDMSLAELQSKQTMVYDSKQTLVKIIDPSDLRHDIERRRKERLQNEDEHIFHIASAAERSDQHSSFSRSKDTHVDEFQKPTSFEKSNFRKFIQKPCSSDTMQRKDVITHRPFVEENNQNTRGFRRPFKTNFRGGRFHFQHKSDLVQKSLYIQAKYQRLRFAGPRGFVTNKFRERLLRGKKEYTNIDPAI", "length": 710 }, "evidence": [ { "id": "A0A480NUY6", "url": "https://omabrowser.org/oma/group/A0A480NUY6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A9J7H7B5-1", "protein_name": "BCLAF1 and THRAP3 family member 3 isoform X1", "gene_name": "Bclaf3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYYEERHFHGHYDPEYRNDPKRSFAWRVDDEKHGQNKPRIPPRVNPYYRSYENRSPSPNVKSVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYSESATSYTEHDRDCYPPQMQGRYIPDEHRGRGSGRGGKPPEMSLEDSFRFEEAWHEDELRHQRVQEESYPQSPRRGSEDFDARNPFQKRYPEDHDFRKYSYTSKRPTDAARYENREPSRIPKWKPEHSFVPFQEKNEDWSFGSQSHRYTEREYPEISSATKVSYDYRHKHHKLSDSEQDFPDGRFQKYLKEEDRKYSSLKVPGNRESDCFSAARGRENENEQASGPFQLYKKDCVSYTNTNIKEADLGPCNDKWKRKLKEDCRKESASSSKQLRASPKPEDKRYSFVKKKSLTVKVDVNNIDTFRSTSRYSAERQVSHDLVAVGRKNDNFHPVFQHLDSPQNPENKPTEEFTQEIITIIHEVKASCSATSDITLHERFSRMQSRHPDFDEMALSSDPEFHRRIDMSLADLQNKQTMVYEPDETLVKVIDPNDLRHDIERRRKERLQNEDENIFHMASPTERNHQCPSFSKVKTVRVDGFQKPPHFIKSNFRKFIQKPYINYPMQRKDAITRKRFRVEENHQNRRGSKRSFKNFLGGRFQPHFKSHLVQKSLYIQAKYQRLRFAGPRGFITNKFRNRFLRRKKCFPCLRGVGIHEYPVSEYSTIIYLKHLYYHSLQRKASLIKAGSIICL", "length": 744 }, "evidence": [ { "id": "A0A480NUY6", "url": "https://omabrowser.org/oma/group/A0A480NUY6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A2AG58-1", "protein_name": "BCLAF1 and THRAP3 family member 3", "gene_name": "Bclaf3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYHEERHFHGHYDPEYRHDQQRPFTWRMDDEKHGQNKPRIPPRVNSYHRSYVNRSPSPNVKPVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYTESAATYMEHERDCYIPTVQGRYTPDDHRGRGRGSGRGEKPPQMSLGKPPKMSLGKPPQMSLADSLRFKEKWHEDELRHQRVQEESYPQSPRRGSEDFGTRNPFQKRYPEDHDFRKYGYTSKRPTDAARYENRDPARIPKWKPEHSFLPFQEKKEEWSFGAQGHRYTEREYPERSSTTRVSYDYRHKHHKLSESEQDFPDGRFHKHLKEEDRKYSSIKAPANRELDCFSTTRGREIENEQINGPFYLYNKNSVSYNHTNIKDADLEPCNDKWKKKISKEDCRKENASFSKQFDTSPKPEEKCYSLIKKKPLSVKVDRNKTDTFRSTSRYSAERQISHDLVAIGKTSDNFHPVFQHLDSTQNPENKPTEEFAQEIITLIHKVKADSFVTPDITLNERFSRIKNRQDADFNQTKSNSDPEFHRRIDMSLDDFQNKYTMVYEPDKTLVKVIEPNDLRHDIERRRKERLQNEDENIFHMASPTERNHQSPSFSKVKTIRADGFQKPPHFIKSNFRKFIQKPYINYTMQRKDAIDQKIFRVEENHQNRRGSKGSFKNFLGGRFQPHYKSHLVQKSMYIQAKYQRLRFAGPRGFITNKFRNRFLRKKKEYPVLPRTNNLELLQVEPTLYEDLTEHLIFVRNWN", "length": 752 }, "evidence": [ { "id": "A0A480NUY6", "url": "https://omabrowser.org/oma/group/A0A480NUY6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AJT9-1", "protein_name": "BCLAF1 and THRAP3 family member 3", "gene_name": "BCLAF3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"isoform_ac": "A0A5G2R1C0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRN7/entry#A0A5G2R1C0-1", "sequence": { "sequence": "MLPAGCSRRLVAELQNALDSCAERQRQLERSLRIARRLLQAWEPKETPAPEPTPRPETNEEAQFSACTPSPQDLQELELLTRALEKAARVRKGISKAGGDKAPSLKSASIAASPPSRISAPAQASRRAGSRASQTKPPKGIRQTRVPAKNLPEHRLLSVADATCKRRGAQAVKPEPGLRDQQMVPSAAAQAPEAFMLKDKGVLLQLPVAFRKAASQNSRLWAQLSSAQTSDSADAAATAKAQFLQKMQTASGWPSATEVEAEVGRLQKACSLLRLRMEEELMADPEDWAQEHRCLLTLQGLQDMVGQCLHRLRELHPAVGEQLLRPWPEGRLPRASSPCGGGADPVWSPQLLLYSSPQELQTLAALRLRVAMLDQQIHLEKVLPGGVGGLSVGEPPGTSRSGALRAWPQ", "length": 409, "header": "tr|A0A5G2R1C0-1|A0A287BRN7_PIG Computationally mapped isoform of Tubulin epsilon and delta complex 2 OS=Sus scrofa OX=9823 GN=TEDC2 PE=4 SV=1 CANONICAL=A0A287BRN7-1" }, "locus": { "chromosome": "3", "start_pos": 39584337, "end_pos": 39580909, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082432.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082432.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070976.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070976.1" } ] } }, { "isoform_ac": "F1SUH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRN7/entry#F1SUH9-1", "sequence": { "sequence": "MLPAGCSRRLVAELQNALDSCAERQRQLERSLRIARRLLQAWEPKETPAPEPTPRPETNEEAQFSACTPSPQDLQELELLTRALEKAARVRKGISKAGGDKAPSLKSASIAASPPSRISAPAQASRRAGSRASQTKPPKGIRQTRVPAKNLPEHRLLSVADATCKRRGAQAVKPEPGLRDQQMVPSAAAQAPEAFMLKDKGLWAQLSSAQTSDSADAAATAKAQFLQKMQTASGWPSATEVEAEVGRLQKACSLLRLRMEEELMADPEDWAQEHRCLLTLQGLQDMVGQCLHRLRELHPAVGEQLLRPWPEGRLPRASSPCGGGADPVWSPQLLLYSSPQELQTLAALRLRVAMLDQQIHLEKVLLAELLPAVSKPEALGPRWPALCRAVHSLLCEGGKHFLTVLREDAPAD", "length": 412, "header": "tr|F1SUH9-1|A0A287BRN7_PIG Computationally mapped isoform of Tubulin epsilon and delta complex 2 OS=Sus scrofa OX=9823 GN=TEDC2 PE=4 SV=5 CANONICAL=A0A287BRN7-1" }, "locus": { "chromosome": "3", "start_pos": 39584337, "end_pos": 39580601, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008827.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008827.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008603.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008603.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 53, "start_aa": "Thr", "end_pos": 53, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr53", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1C0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1C0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3I2T0-1", "protein_name": "Tubulin epsilon and delta complex protein 2", "gene_name": "Tedc2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLGAKVDCLLPTDCARRLVAEMQGALDACAHRQRQLERSLRVSRRLLQVWEPARTPAPEPETKEEAATPACTPNAQDLKELELLTQALEKAVRVRKVVSKARQRDRTPSLASASNAATSGATAPAHSQAPSQASSLASGARSTKGVQRATVPSRSADPECRRRSRGDRTQERTEAQVTGSGPGLRGQQMAPGAVPPSTELFTLKEKGTLLQLPVAFRKAASQNSRLWAQLSSIQASDSTDVTRAAKTEFLHKLQMASGSSSHRPSAAEVEAHVQSLRKARTLLRLHMQKELSTAPTDWMQEYRGLLILEGLQTIVGQCLHRVQVLQAAVTEQLPGLHLVEKPTQASSLGGGEMDTSWSPELLLYSSTEELQTLATLKLRVAMLDQQIHLEKVLMAELFPLINTQEAGGSPQLALCRAAYSLLCEGGEQFLTVLRDDPTD", "length": 439 }, "evidence": [ { "id": "A0A287BRN7", "url": "https://omabrowser.org/oma/group/A0A287BRN7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6GQV0-1", "protein_name": "Tubulin epsilon and delta complex protein 2", "gene_name": "Tedc2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLGVKGNYLLPADCAHRLVAELQGALDSCADRQRQLERSLRVSRRLLQVWEPARTPSPVPETKEEDPSPACAPSSQDLEELELLTQALEKAVRVRKGVSNAGQRDRTPTLTSKAATSGAAAASHPRAPSRGGSRVLGTRSTKGIQRATAPPKDYPEHRLRSKGDKTHVRTQDQTTGYGPDLRDQQMTPSSAHHTTELFALKEKGTLLQLPEDFRKAVSRNSCLWAQLNSARTNDSTDATRAAKTQFLHKLQMASGCSSHRPSATEVEAHARILRKACMLLRLRMQKELAIAPTDWMQEYRCLLTLEGLQTVVGQCLHRIQVLQAAVTEQLPGECLAETRTQASSVCGGEVDSACSPELLLYASTEELQTLATLKLQVALLHQQIHLEKVLMAELLPLINTQDPGGPPWLALCRAAYSLLCEGGERFLTVLRDDPAD", "length": 436 }, "evidence": [ { "id": "A0A287BRN7", "url": "https://omabrowser.org/oma/group/A0A287BRN7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7L2K0-1", "protein_name": "Tubulin epsilon and delta complex protein 2", "gene_name": "TEDC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLPAGCSRRLVAELQGALDACAQRQLQLEQSLRVCRRLLHAWEPTGTRALKPPPGPETNGEDPLPACTPSPQDLKELEFLTQALEKAVRVRRGITKAGERDKAPSLKSRSIVTSSGTTASAPPHSPGQAGGHASDTRPTKGLRQTTVPAKGHPERRLLSVGDGTRVGMGARTPRPGAGLRDQQMAPSAAPQAPEAFTLKEKGHLLRLPAAFRKAASQNSSLWAQLSSTQTSDSTDAAAAKTQFLQNMQTASGGPQPRLSAVEVEAEAGRLRKACSLLRLRMREELSAAPMDWMQEYRCLLTLEGLQAMVGQCLHRLQELRAAVAEQPPRPCPVGRPPGASPSCGGRAEPAWSPQLLVYSSTQELQTLAALKLRVAVLDQQIHLEKVLMAELLPLVSAAQPQGPPWLALCRAVHSLLCEGGARVLTILRDEPAV", "length": 433 }, "evidence": [ { "id": "A0A287BRN7", "url": "https://omabrowser.org/oma/group/A0A287BRN7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of smoothened signaling pathway", "id": "GO:0045880", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045880", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRN7", "url": "https://www.uniprot.org/uniprotkb/A0A287BRN7" } ], "pmid": "" }, { "name": "microtubule cytoskeleton organization", "id": "GO:0000226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000226", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRN7", "url": "https://www.uniprot.org/uniprotkb/A0A287BRN7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRN7", "url": "https://www.uniprot.org/uniprotkb/A0A287BRN7" } ], "pmid": "" }, { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRN7", "url": "https://www.uniprot.org/uniprotkb/A0A287BRN7" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRN7", "url": "https://www.uniprot.org/uniprotkb/A0A287BRN7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 53 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BRP7-1", "uniprot_ac": "A0A287BRP7", "uniprot_id": "A0A287BRP7_PIG", "mass": { "chemical_mass": 12582.0, "monoisotopic_mass": 12582.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A287BRP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BRP7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BRP7", "url": "https://www.uniprot.org/uniprotkb/A0A287BRP7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A287BRP7", "locus": {} } ], "crossref": [ { "id": "A0A287BRP7", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BRP7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040565", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040565", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "A0A287BRP7", "url": "https://www.uniprot.org/uniprotkb/A0A287BRP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRP7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGTLGQCVRKARVVSPLARVQSRQNLMVPEPRSLSLFTKKPPRNVPPPPAGTTRYPPPTKPFPPGARDDKGPGSGWWLRGLRGVVSTLRSALPNRPREGPCCLPWGPALASVSRAAV", "length": 117, "header": "tr|A0A287BRP7-1|A0A287BRP7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287BRP7-1" }, "isoforms": [ { "isoform_ac": "A0A287BRP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRP7/entry#A0A287BRP7-1", "sequence": { "sequence": "MGTLGQCVRKARVVSPLARVQSRQNLMVPEPRSLSLFTKKPPRNVPPPPAGTTRYPPPTKPFPPGARDDKGPGSGWWLRGLRGVVSTLRSALPNRPREGPCCLPWGPALASVSRAAV", "length": 117, "header": "tr|A0A287BRP7-1|A0A287BRP7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287BRP7-1" }, "locus": { "chromosome": "17", "start_pos": 61964848, "end_pos": 61963738, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048731.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048731.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059185.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059185.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRP7", "url": "https://www.uniprot.org/uniprotkb/A0A287BRP7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], 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"Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BRW3", "url": "https://www.uniprot.org/uniprotkb/A0A287BRW3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRW3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGAYKYIQELWRKKQSDIMCFLLQVRCWQYHQLSAFHRAPCPTRPDRASRLGYKAKEGYVIYRICVHRGGRKCPVPKGATNGKPVHHGVNQLKFAQSLQSVAEERAGHHCGVLKVLNSYWVGEDSMYKFIDSFHKAVRRNPDTQWITKPVHKHREIRGLEKGHKFHQTIGGSGHAAWRRRQYSPLHWG", "length": 188, "header": "tr|A0A287BRW3-1|A0A287BRW3_PIG Isoform 1 of Ribosomal protein L15 OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287BRW3-1" }, "isoforms": [ { "isoform_ac": "A0A287BRW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRW3/entry#A0A287BRW3-1", "sequence": { "sequence": "MGAYKYIQELWRKKQSDIMCFLLQVRCWQYHQLSAFHRAPCPTRPDRASRLGYKAKEGYVIYRICVHRGGRKCPVPKGATNGKPVHHGVNQLKFAQSLQSVAEERAGHHCGVLKVLNSYWVGEDSMYKFIDSFHKAVRRNPDTQWITKPVHKHREIRGLEKGHKFHQTIGGSGHAAWRRRQYSPLHWG", "length": 188, "header": "tr|A0A287BRW3-1|A0A287BRW3_PIG Isoform 1 of Ribosomal protein L15 OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=A0A287BRW3-1" }, "locus": { "chromosome": "14", "start_pos": 103411503, "end_pos": 103410565, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050864.2", "url": "https://www.ensembl.org/id/ENSSSCT00000050864.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059385.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059385.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRW3", "url": "https://www.uniprot.org/uniprotkb/A0A287BRW3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRW3", "url": "https://www.uniprot.org/uniprotkb/A0A287BRW3" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRW3", "url": "https://www.uniprot.org/uniprotkb/A0A287BRW3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cytoplasmic translation", "id": "GO:0002181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002181", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRW3", "url": "https://www.uniprot.org/uniprotkb/A0A287BRW3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRW3", "url": "https://www.uniprot.org/uniprotkb/A0A287BRW3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": 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{ "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480NNW8-1", "uniprot_ac": "A0A480NNW8", "uniprot_id": "A0A480NNW8_PIG", "mass": { "chemical_mass": 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}, { "name": "Glycoprotein-associated amino acid transporter b0,+AT1", "type": "synonym", "evidence": [ { "id": "A0A480NNW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8/entry#names_and_taxonomy" } ] }, { "name": "Solute carrier family 7 member 9", "type": "synonym", "evidence": [ { "id": "A0A480NNW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480NNW8", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC7A9", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8", "locus": { "chromosome": "6", "start_pos": 42669093, "end_pos": 42714267, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022948", "url": "https://www.ensembl.org/id/ENSSSCG00000022948" } ] } } ], "crossref": [ { "id": "ENSSSCG00000022948", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022948", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100037973", "url": "https://www.ncbi.nlm.nih.gov/gene/100037973", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002293", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002293", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TYWVISF", "url": "https://omabrowser.org/oma/group/TYWVISF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480NNW8", "url": "https://www.orthodb.org/?gene=A0A480NNW8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11785", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11785", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11785:SF354", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11785:SF354", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-352230", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-352230", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020948835", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948835", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "70827", "url": "https://www.rhea-db.org/rhea/70827", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "71059", "url": "https://www.rhea-db.org/rhea/71059", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "71063", "url": "https://www.rhea-db.org/rhea/71063", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "71067", "url": "https://www.rhea-db.org/rhea/71067", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "71071", "url": "https://www.rhea-db.org/rhea/71071", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "71075", "url": "https://www.rhea-db.org/rhea/71075", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BRW9", "url": "https://www.uniprot.org/uniprotkb/A0A287BRW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRW9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480NNW8", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480NNW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FN41", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FN41-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN41-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6F7", "url": "https://www.uniprot.org/uniprotkb/I3L6F7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6F7-1", "url": "https://www.uniprot.org/uniprotkb/I3L6F7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQETSLRKRREDEKSLQSTEPKTTNLQKELGLFSGICIIVGTIIGSGIFISPKSVLSNTEAVGPCLIIWAACGILATLGALCFAELGTMITKSGGEYPYLMEAFGPIPAYLFSWTSLFVIKPSSFAIICLSFSEYVSSPFYAGCSPPQVVVKFLAAAAILVITMVNALSVRLGSYVQNVFTAAKLVIVAVIIISGLVLLAQGNTKNFENSFEGTKLSVGAIGLAFYNGLWAYDGWNQLNYITEELENPFRNLPLAIIIGIPLVTGCYILMNVSYFTVMTATELLQSQAVAVTFGDRVLYPASWVVPLFVAFSTIGAANGSCFTAGRLVYVAGREGHMLKVLSYISVKRLTPAPAIIFHGIIATIYIIPGDINSLVNYFSFAAWLFYGLTISGLVVMRFTRKELKRPIKVPIVIPVVVTLLSLFLVLAPIISMPAWEYLYCVLFMLSGLIFYFLFVRYKFGWAQKISKPLTMHLQMLMEVVPPEEPPE", "length": 487, "header": "tr|A0A480NNW8-1|A0A480NNW8_PIG Isoform 1 of b(0,+)-type amino acid transporter 1 OS=Sus scrofa OX=9823 GN=SLC7A9 PE=3 SV=1 CANONICAL=A0A480NNW8-1" }, "isoforms": [ { "isoform_ac": "A0A287BRW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8/entry#A0A287BRW9-1", "sequence": { "sequence": "MQETSLRKRREDEKSLQSTEPKTTNLQKELGLFSGICIIVGTIIGSGIFISPKSVLSNTEAVGPCLIIWAACGILATLGALCFAELGTMITKSGGEYPYLMEAFGPIPAYLFSWTSLFVIKPSSFAIICLSFSEYVSSPFYAGCSPPQVVVKFLAAAAILVITMVNALSVRLGSYVQNVFTAAKLVIVAVIIISGLVLLAQGNTKNFENSFEGTKLSVGAIGLAFYNGLWAYDGWNQLNYITEELENPFRNLPLAIIIGIPLVTGCYILMNVSYFTVMTATELLQSQAVAVTFGDRVLYPASWVVPLFVAFSTIGAANGSCFTAGRLVYVAGREGHMLKVLSYISVKRLTPAPAIIFHGIIATIYIIPGDINSLVNYFSFAAWLFYGLTISGLVVMRFTRKELKRPIKSRSPCTSRCSWKSSPRRNHQSNKLSLPGPSPSCDEIYFCKQYLWLFLPDVFKKKKKA", "length": 465, "header": "tr|A0A287BRW9-1|A0A480NNW8_PIG Computationally mapped isoform of b(0,+)-type amino acid transporter 1 OS=Sus scrofa OX=9823 GN=SLC7A9 PE=3 SV=2 CANONICAL=A0A480NNW8-1" }, "locus": { "chromosome": "6", "start_pos": 42705369, "end_pos": 42669093, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037041.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037041.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058924.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058924.3" } ] } }, { "isoform_ac": "A0A480NNW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8/entry#A0A480NNW8-1", "sequence": { "sequence": "MQETSLRKRREDEKSLQSTEPKTTNLQKELGLFSGICIIVGTIIGSGIFISPKSVLSNTEAVGPCLIIWAACGILATLGALCFAELGTMITKSGGEYPYLMEAFGPIPAYLFSWTSLFVIKPSSFAIICLSFSEYVSSPFYAGCSPPQVVVKFLAAAAILVITMVNALSVRLGSYVQNVFTAAKLVIVAVIIISGLVLLAQGNTKNFENSFEGTKLSVGAIGLAFYNGLWAYDGWNQLNYITEELENPFRNLPLAIIIGIPLVTGCYILMNVSYFTVMTATELLQSQAVAVTFGDRVLYPASWVVPLFVAFSTIGAANGSCFTAGRLVYVAGREGHMLKVLSYISVKRLTPAPAIIFHGIIATIYIIPGDINSLVNYFSFAAWLFYGLTISGLVVMRFTRKELKRPIKVPIVIPVVVTLLSLFLVLAPIISMPAWEYLYCVLFMLSGLIFYFLFVRYKFGWAQKISKPLTMHLQMLMEVVPPEEPPE", "length": 487, "header": "tr|A0A480NNW8-1|A0A480NNW8_PIG Isoform 1 of b(0,+)-type amino acid transporter 1 OS=Sus scrofa OX=9823 GN=SLC7A9 PE=3 SV=1 CANONICAL=A0A480NNW8-1" }, "locus": { "chromosome": "6", "start_pos": 42705369, "end_pos": 42669202, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054561.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054561.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059343.3", "url": "https://www.ensembl.org/id/ENSSSCP00000059343.3" } ] } }, { "isoform_ac": "A0A8W4FN41-1", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8/entry#A0A8W4FN41-1", "sequence": { "sequence": "MQETSLRKRREDEKSLQSTEPKTTNLQKELGLFSGICIIVGTIIGSGIFISPKSVLSNTEAVGPCLIIWAACGILATLGALCFAELGTMITKSGGEYPYLMEAFGPIPAYLFSWTSLFVIKPSSFAIICLSFSEYVSSPFYAGCSPPQVVVKFLAAAAILVITMVNALSVRLGSYVQNVFTAAKLVIVAVIIISGLVLLAQGNTKNFENSFEGTKLSVGAIGLAFYNGLWAYDGWNQLNYITEELENPFRNLPLAIIIGIPLVTGCYILMNVSYFTVMTATELLQSQAVAVTFGDRVLYPASWVVPLFVAFSTIGAANGSCFTAGGIIATIYIIPGDINSLVNYFSFAAWLFYGLTISGLVVMRFTRKELKRPIKVPIVIPVVVTLLSLFLVLAPIISMPAWEYLYCVLFMLSGLIFYFLFVRYKFGWAQKISKPLTMHLQMLMEVVPPEEPPE", "length": 454, "header": "tr|A0A8W4FN41-1|A0A480NNW8_PIG Computationally mapped isoform of b(0,+)-type amino acid transporter 1 OS=Sus scrofa OX=9823 GN=SLC7A9 PE=3 SV=1 CANONICAL=A0A480NNW8-1" }, "locus": { "chromosome": "6", "start_pos": 42705369, "end_pos": 42669202, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104088.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104088.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080906.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080906.1" } ] } }, { "isoform_ac": "I3L6F7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8/entry#I3L6F7-1", "sequence": { "sequence": "MQETSLRKRREDEKSLQSTEPKTTNLQKELGLFSGICIIVGTIIGSGIFISPKSVLSNTEAVGPCLIIWAACGILATLGALCFAELGTMITKSGGEYPYLMEAFGPIPAYLFSWTSLFVIKPSSFAIICLSFSEYVSSPFYAGCSPPQVVVKFLAAAAILVITMVNALSVRLGSYVQNVFTAAKLVIVAVIIISGLVLLAQGNTKNFENSFEGTKLSVGAIGLAFYNGLWAYDGWNQLNYITEELENPFRNLPLAIIIGIPLVTGCYILMNVSYFTVMTATELLQSQAVAVTFGDRVLYPASWVVPLFVAFSTIGAANGSCFTAGRLVYVAGREGHMLKVLSYISVKRLTPAPAIIFHGIIATIYIIPGDINSLVNYFSFAAWLFYGLTISGLVVMRFTRKELKRPIKVPIVIPVVVTLLSLFLVLAPIISMPAWEYLYCVLFMLSGLIFYFLFVRYKFGWAQKISKACQAPEPPPQASSDARPCLVSLILTRVPRRQGWTVKASSWICTAAT", "length": 513, "header": "tr|I3L6F7-1|I3L6F7_PIG Computationally mapped isoform of b(0,+)-type amino acid transporter 1 OS=Sus scrofa OX=9823 GN=SLC7A9 PE=3 SV=2 CANONICAL=A0A480NNW8-1" }, "locus": { "chromosome": "6", "start_pos": 42705369, "end_pos": 42670756, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027536.3", "url": "https://www.ensembl.org/id/ENSSSCT00000027536.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019608.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019608.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FN41", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN41" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-352230", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-352230", "resource": "Reactome", "description": "Amino acid transport across the plasma membrane" } ], "orthologs": [ { "uniprot_canonical_ac": "F1QGJ2-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "slc7a9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEEDLKKTKANNGSVSRAVEAKNPDQPKAAVLHQDVGLLSGICLIVGTMIGSGIFISPKAVLEGTGAVGPCLCVWAACGVLATLGALCYAELGTMIIKSGGEYPYLMEGFGPVLAYLYSWTTIIVLKPSSFAIIALSCAEYASTPFYPGCTPPQVVTKCLAAACILIITLVNCLSVKLAYRVQNFFTAAKLLIIIIIVVSGIVMLAQGNTQNLRDPFAGATTSFGAIGLAFYNGLWAYDGWNQLNFITEELKNPYKNLPLAIIIGIPLVTVCYIMVNIAYFSVMTSTELLQSSAVAVTFGDRVLYPLSWIVPVFVVCSTFGAANGSCFTAGRLTYVAGREGHMVKIMSYISVKRYTPSPALMFNGIVSIIYIMPTDINTLINYFSFATWLFYGLTCLALIVMRFTRKDLKRPVKVPIVIPALVVVVSCYLVLAPIIDKPEWEYLYCTMFIVGGLLLYVPFIHYKFNWTRRLMRPFTMHLQLLLQVVPPEKIE", "length": 492 }, "evidence": [ { "id": "A0A480NNW8", "url": "https://omabrowser.org/oma/group/A0A480NNW8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P82251-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "SLC7A9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDTGLRKRREDEKSIQSQEPKTTSLQKELGLISGISIIVGTIIGSGIFVSPKSVLSNTEAVGPCLIIWAACGVLATLGALCFAELGTMITKSGGEYPYLMEAYGPIPAYLFSWASLIVIKPTSFAIICLSFSEYVCAPFYVGCKPPQIVVKCLAAAAILFISTVNSLSVRLGSYVQNIFTAAKLVIVAIIIISGLVLLAQGNTKNFDNSFEGAQLSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTATELLQSQAVAVTFGDRVLYPASWIVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLTPAPAIIFYGIIATIYIIPGDINSLVNYFSFAAWLFYGLTILGLIVMRFTRKELERPIKVPVVIPVLMTLISVFLVLAPIISKPTWEYLYCVLFILSGLLFYFLFVHYKFGWAQKISKPITMHLQMLMEVVPPEEDPE", "length": 487 }, "evidence": [ { "id": "A0A480NNW8", "url": "https://omabrowser.org/oma/group/A0A480NNW8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P82252-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "Slc7a9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEETSPRRRREDEKSVHSTEPKTTSLQKEVGLLSGICIIVGTIIGSGIFISPKSVLANTESVGPCLIIWAACGVLATLGALCFAELGTMITKSGGEYPYLMEAFGPIPAYLFSWTSLIVMKPSSFAIICLSFSEYVCAAFYLGCRPPAVVVKLLAAAAILLITTVNALSVRLGSYVQNVFTAAKLVIVAIIIISGLVLLAQGNVKNFQNSFEGSQTSVGSISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPMAIVIGIPLVTVCYILMNIAYFTVMTPTELLQSQAVAVTFGDRVLYPASWVVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVKRLTPAPALVFYGIIAIIYIIPGDINSLVNYFSFAAWLFYGMTILGLVVMRFTRKDLERPIKVPIFIPIIVILVSVFLILAPIISSPAWEYLYCVLFILSGLIFYFLFVHYKFRWAQKISRPITKHLQMLMEVVPPEKDPE", "length": 487 }, "evidence": [ { "id": "A0A480NNW8", "url": "https://omabrowser.org/oma/group/A0A480NNW8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9QXA6-1", "protein_name": "b(0,+)-type amino acid transporter 1", "gene_name": "Slc7a9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEETSLRRRREDEKSTHSTELKTTSLQKEVGLLSGICIIVGTIIGSGIFISPKSVLANTESVGPCLIIWAACGILATLGALCFAELGTMITKSGGEYPYLMEAFGPIPAYLFSWTSLIVMKPSSFAIICLSFSEYVCAAFYSGCKPPAVVVKLLAAAAILFITTVNALSVRLGSYVQNVFTAAKMVIVAIIIISGLVFLAQGNVKNFQNSFEGTQTSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPMAIVIGIPLVTVCYILMNIAYFTVMTPTELLQSQAVAVTFGDRVLYPASWVVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVKRLTPAPALIFYGIIAIIYIIPGDINSLVNYFSFAAWLFYGMTILGLVVMRFTRKDLERPIKVPLFIPIIVILVSLFLILAPIISEPAWEYLYCVLFILSGLIFYFLFVYYKFGWAQRISRPVTKHLQMLMEVVPPEKDPE", "length": 487 }, "evidence": [ { "id": "A0A480NNW8", "url": "https://omabrowser.org/oma/group/A0A480NNW8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A480NNW8", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8" } ], "pmid": "" }, { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "A0A480NNW8", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8" } ], "pmid": "" }, { "name": "neutral L-amino acid transmembrane transporter activity", "id": "GO:0015175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015175", "evidence": [ { "database": "UniProtKB", "id": "A0A480NNW8", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8" } ], "pmid": "" }, { "name": "L-cystine transmembrane transporter activity", "id": "GO:0015184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015184", "evidence": [ { "database": "UniProtKB", "id": "A0A480NNW8", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8" } ], "pmid": "" }, { "name": "broad specificity neutral L-amino acid:basic L-amino acid antiporter activity", "id": "GO:0180009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0180009", "evidence": [ { "database": "UniProtKB", "id": "A0A480NNW8", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "A0A480NNW8", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8" } ], "pmid": "" }, { "name": "brush border membrane", "id": "GO:0031526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031526", "evidence": [ { "database": "UniProtKB", "id": "A0A480NNW8", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "amino acid transport", "id": "GO:0006865", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006865", "evidence": [ { "database": "UniProtKB", "id": "A0A480NNW8", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8" } ], "pmid": "" }, { "name": "L-cystine transport", "id": "GO:0015811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015811", "evidence": [ { "database": "UniProtKB", "id": "A0A480NNW8", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8" } ], "pmid": "" }, { "name": "amino acid transmembrane transport", "id": "GO:0003333", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003333", "evidence": [ { "database": "UniProtKB", "id": "A0A480NNW8", "url": "https://www.uniprot.org/uniprotkb/A0A480NNW8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 271, "end_pos": 273, "annotation": "n_glycosylation_sequon" }, { "start_pos": 318, "end_pos": 320, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "70827", "name": "", "equation": "L-lysine(out) + L-arginine(in) = L-lysine(in) + L-arginine(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "70827", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/70827" } ] }, { "id": "71059", "name": "", "equation": "L-leucine(out) + L-arginine(in) = L-leucine(in) + L-arginine(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "71059", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/71059" } ] }, { "id": "71063", "name": "", "equation": "L-histidine(out) + L-arginine(in) = L-histidine(in) + L-arginine(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "71063", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/71063" } ] }, { "id": "71067", "name": "", "equation": "L-arginine(in) + L-phenylalanine(out) = L-arginine(out) + L-phenylalanine(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "71067", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/71067" } ] }, { "id": "71071", "name": "", "equation": "L-cysteine(out) + L-arginine(in) = L-cysteine(in) + L-arginine(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "71071", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/71071" } ] }, { "id": "71075", "name": "", "equation": "L-cystine(out) + L-arginine(in) = L-cystine(in) + L-arginine(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "71075", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/71075" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12260", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12260", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BRY2", "url": "https://www.uniprot.org/uniprotkb/A0A287BRY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWRLVPPKLGRLSRSLKLAALGSLLVLMVLHSPSLLASWQRNELADRRFLQLNKCPACFGTSWCRRFLNGQVVFEAWGRLRLLDFLNVKNVYFAQYGEPREGGRRRVVLKRLGSQRELAQLDQSICKRATGRPRCDLLQAMPRTEFARLNGDVRLLTPEAVEGWSDLVHCPSQRLLDRLVRRYAETKDSGSFLLRNLKDSERMQLLLTLAFNPEPLVLQSFPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTNNDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDDCDKEACLSFSKEILCARATVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLEALLDECANPKKRYGRFQAAKELREYLAQLSNNVR", "length": 430, "header": "tr|A0A287BRY2-1|A0A287BRY2_PIG Isoform 1 of Divergent protein kinase domain 2A OS=Sus scrofa OX=9823 GN=DIPK2A PE=3 SV=1 CANONICAL=A0A287BRY2-1" }, "isoforms": [ { "isoform_ac": "A0A287BRY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRY2/entry#A0A287BRY2-1", "sequence": { "sequence": "MWRLVPPKLGRLSRSLKLAALGSLLVLMVLHSPSLLASWQRNELADRRFLQLNKCPACFGTSWCRRFLNGQVVFEAWGRLRLLDFLNVKNVYFAQYGEPREGGRRRVVLKRLGSQRELAQLDQSICKRATGRPRCDLLQAMPRTEFARLNGDVRLLTPEAVEGWSDLVHCPSQRLLDRLVRRYAETKDSGSFLLRNLKDSERMQLLLTLAFNPEPLVLQSFPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTNNDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDDCDKEACLSFSKEILCARATVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLEALLDECANPKKRYGRFQAAKELREYLAQLSNNVR", "length": 430, "header": "tr|A0A287BRY2-1|A0A287BRY2_PIG Isoform 1 of Divergent protein kinase domain 2A OS=Sus scrofa OX=9823 GN=DIPK2A PE=3 SV=1 CANONICAL=A0A287BRY2-1" }, "locus": { "chromosome": "13", "start_pos": 84653570, "end_pos": 84634976, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058048.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058048.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059405.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059405.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRY2", "url": "https://www.uniprot.org/uniprotkb/A0A287BRY2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2U652-1", "protein_name": "Divergent protein kinase domain 2A", "gene_name": "DIPK2A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLRLVSLKLGRLYRYVKLAVLGSLAAALVLNTHSLLASLQRNELAERRFLQLNKCPACWGTSWCRKFLNGQLRLESWGRLRLFDFFNVKNVYFARYGEPREGSRRVVLKRLGSAQELADIDAKICRRATGRGRCDLLQALHATEFASLNGDVRLLTPDAVEGWSDLVHCPSQRLLDRLVRRYAETKDSGSFLLRNLKDSERMQLLITLAFNPEPLVLQSFPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTNNDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDDCDKEACLSFSKEILCARVTVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPADIAKDGRLEALLDECANPKKRYGRFQAAKELREYLAQLSNNVR", "length": 429 }, "evidence": [ { "id": "A0A287BRY2", "url": "https://omabrowser.org/oma/group/A0A287BRY2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BNC4-1", "protein_name": "Divergent protein kinase domain 2A", "gene_name": "DIPK2A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MWRLVPPKLGRLSRSLKLAALGSLLVLMVLHSPSLLASWQRNELADRRFLQLNKCPACFGTSWCRRFLNGQVVFEAWGRLRLLDFLNVKNVYFAQYGEPREGGRRRVVLKRLGSQRELAQLDQSICKRATGRPRCDLLQAMPRTEFARLNGDVRLLTPEAVEGWSDLVHCPSQRLLDRLVRRYAETKDSGSFLLRNLKDSERMQLLLTLAFNPEPLVLQSFPSDEGWPFAKYLGACGRMVAVNYVGEELWSYFNAPWEKRVDLAWQLMEIAEQLTNNDFEFALYLLDVSFDNFAVGPRDGKVIIVDAENVLVADKRLIRQNKPENWDVWYESKFDDCDKEACLSFSKEILCARATVDHNYYAVCQNLLSRHATWRGTSGGLLHDPPSEIAKDGRLEALLDECANPKKRYGRFQAAKELREYLAQLSNNVR", "length": 430 }, "evidence": [ { "id": "A0A287BRY2", "url": "https://omabrowser.org/oma/group/A0A287BRY2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3USZ8-1", "protein_name": "Divergent protein 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020936471", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936471", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BS25", "url": "https://www.uniprot.org/uniprotkb/A0A287BS25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BS25-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS25-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVALGCAIQASLNQGSVFQEYDTDCEVFRQRFRQFQYKEAAGPHEAFNKLWELCCQWLKPKMRSKEQILELLVLEQFLTILPTEIETWVREHCPENRERVVSLIEDLQRELEIPEQQIDRQEMLLEELAPVGMAHIPPPNIHLESPPLQVMGPAPEVAVAEAWIPQAGPQELSFGAAGEGQPFLDPGYPIPKLDVSFPLEHREEAWVKELQDSKEIKQLLDSKLGFEIGIENEEDTSEKQKKLDNLYPFLVPLEGNALHGPILQKDYVQLENHWEGPSEDLQADLTKLVDRQNPPAGEKAEGSNAEEPLNPRPHKKKSPGDKPHRCSQCGKCFARKSQLTGHQRIHSGEEPHKCPECGKRFLRSSDLYRHQRLHTGERPYECTVCKKRFTRRSHLIGHQRTHSEEETYKCLECGKSFCHGSSLKRHLKTHSGEKPHRCHNCGKSFSRLTALTLHQRTHTEERPFKCNYCGKSFRQRPSLVIHLRIHTGEKPYKCSHCSKSFRQRAGLIMHQVTHFRGLL", "length": 520, "header": "tr|A0A287BS25-1|A0A287BS25_PIG Isoform 1 of Zinc finger protein 449 OS=Sus scrofa OX=9823 GN=ZNF449 PE=3 SV=1 CANONICAL=A0A287BS25-1" }, "isoforms": [ { "isoform_ac": "A0A287BS25-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS25/entry#A0A287BS25-1", "sequence": { "sequence": "MAVALGCAIQASLNQGSVFQEYDTDCEVFRQRFRQFQYKEAAGPHEAFNKLWELCCQWLKPKMRSKEQILELLVLEQFLTILPTEIETWVREHCPENRERVVSLIEDLQRELEIPEQQIDRQEMLLEELAPVGMAHIPPPNIHLESPPLQVMGPAPEVAVAEAWIPQAGPQELSFGAAGEGQPFLDPGYPIPKLDVSFPLEHREEAWVKELQDSKEIKQLLDSKLGFEIGIENEEDTSEKQKKLDNLYPFLVPLEGNALHGPILQKDYVQLENHWEGPSEDLQADLTKLVDRQNPPAGEKAEGSNAEEPLNPRPHKKKSPGDKPHRCSQCGKCFARKSQLTGHQRIHSGEEPHKCPECGKRFLRSSDLYRHQRLHTGERPYECTVCKKRFTRRSHLIGHQRTHSEEETYKCLECGKSFCHGSSLKRHLKTHSGEKPHRCHNCGKSFSRLTALTLHQRTHTEERPFKCNYCGKSFRQRPSLVIHLRIHTGEKPYKCSHCSKSFRQRAGLIMHQVTHFRGLL", "length": 520, "header": "tr|A0A287BS25-1|A0A287BS25_PIG Isoform 1 of Zinc finger protein 449 OS=Sus scrofa OX=9823 GN=ZNF449 PE=3 SV=1 CANONICAL=A0A287BS25-1" }, "locus": { "chromosome": "X", "start_pos": 110946242, "end_pos": 110930994, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040808.2", "url": "https://www.ensembl.org/id/ENSSSCT00000040808.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058928.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058928.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS25", "url": "https://www.uniprot.org/uniprotkb/A0A287BS25" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102166396", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102166396", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7H9M2-1", "protein_name": "Zinc finger protein 449", "gene_name": "Znf449", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKFSLAVRDSPRLLQRGKSWNLRDRPQINCKILEEVMAVALGCAIQASLNQGSVLQEYDTDCEVFRQRFRQFQYTEAAGPHEAFNKLWELCCQWLKPKMRSKEQILELLVLEQFLTILPTEIETWVREHCPDNRERVVSLIEDLQRELEIPEPQIDMDDMLLEELAPVGTVPMPPNLHLDAPELQVMEPVQEPPVPEAWIPQPGPQDLNYSADAECQSFLDPGYQLPKLDMNFPLDHREEPWVKELQDPKEMKQLLDSKIGFEMGIENEEDSSKEKKLETMYPFVVTLEGNALHGPILEKDYVQLENQWEPSPEDLQTDLTKLVEPQNSSLGETPESSNLEEPLNPKPPKKKSPGEKPHRCPQCGKCFARKSQLTGHQRIHSGEEPHKCPECGKRFLRSSDLYRHQRLHTGERPYECTVCKKRFTRRSHLIGHQRTHSEEETYKCLECGKSFCHGSSLKRHLKTHTGEKPHRCHNCGKSFSRLTALTLHQRTHTEERPFKCSYCGKSFRQRPSLVIHLRIHTGEKPYKCSHCSKSFRQRAGLIMHQVTHFRGLL", "length": 554 }, "evidence": [ { "id": "A0A287BS25", "url": "https://omabrowser.org/oma/group/A0A287BS25/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "M0R5T3-1", "protein_name": "Zinc finger protein 449", "gene_name": "Zfp449", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAVALGRAIQASLNQGSVLQEYDTDCEVFRQRFRQFQYTEAAGPHEAFNKLWELCCQWLKPKMRSKEQILELLVLEQFLTILPTEIETWVREHCPDNRERVVSLIEDLQRELEIPEPQIDMDDMLLEELAPVGTVPMPPNLHLEEPSLQVMAPVQEPPVPDAWIPQAGPQDLNYSTDGECQSFLDPGYQLPKLDMNFPLDHREEPWVKDLEDPKEMKQLLDSKIGFEMGIENEEDASKQKKLENLYPFVVTLEGNALHGPILQKDYVQLENEWETSPEDLQTDLTKLVDPQNPTLGETPENPDLEEPLNPKPPKKKSPGDKPHRCPQCGKCFARKSQLTGHQRIHSGEEPHKCPECGKRFLRSSDLYRHQRLHTGERPYECTVCKKRFTRRSHLLGHQRTHSEEETYKCLECGKSFCHGSSLKRHLKTHTGEKPHRCHNCGKSFSRLTALTLHQRTHTEERPFKCSYCGKSFRQRPSLVIHLRIHTGEKPYKCTHCSKSFRQRAGLIMHQVTHFRGLL", "length": 518 }, "evidence": [ { "id": "A0A287BS25", "url": "https://omabrowser.org/oma/group/A0A287BS25/", "database": "OMA" } ], 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"Ensembl Gene", "id": "ENSSSCG00000012731", "url": "https://www.ensembl.org/id/ENSSSCG00000012731" } ] } } ], "crossref": [ { "id": "A0A287BS38", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BS38", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012731", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012731", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16030", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16030", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512880", "url": "https://www.ncbi.nlm.nih.gov/gene/100512880", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000917", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000917", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017850", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017850", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024607", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024607", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035874", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035874", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512880", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512880", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HVFTRAY", "url": "https://omabrowser.org/oma/group/HVFTRAY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BS38", "url": "https://www.orthodb.org/?gene=A0A287BS38", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45953", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45953", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45953:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45953:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00884", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00884", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2024096", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2024096", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2024101", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2024101", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020936135", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936135", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BS38", "url": "https://www.uniprot.org/uniprotkb/A0A287BS38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BS38-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS38-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK34", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK34-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK34-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FL56", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FL56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FL56-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FL56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPPGRGLLWLGLVLGSACASLGSAAPGSVATDALNVLLIIVDDLRPSLGCYGDKLVRSPNIDQLASHSLLFQNAFAQQAVCAPSRVSFLTGRRPDTTRLYDFNSYWRAHAGNFSTIPQYFKQNGYVTVSVGKVFHPGISSNHSDDSPYSWSLPPYHPSSEKYENTKTCKGPDGELHANLLCPVDVAEVPEGTLPDKQSTERAIQLLEKLRTSAVPFFLAVGYHKPHIPFRYPQEFQKLYPLENVTLAPDPQVPAGLPPVAYNPWMDIRQREDVQALNLSVPYGPIPTDFQRKIRQSYFASVSYVDTQVGRLLSALDGLELARSTIVALTSDHGWALGEHGEWAKYSNFDVATRVPLLVYVPGRTAPLPEAGGRLFPYIDPFASASESMEPGRQAGDLVELLSLFPTLAGLAGLRVPPRCPVPSFHVELCREGRNLLKYFQFGDLEEEPHARGNPRELVAYSQYPRPADAPQWNSDKPSLKDIKVMGYSIRTVDYRYTVWVGFSPREFLANFSDVHAGELYFVDSDPWQDHNVYNASQGRALPPPLMPTPEGT", "length": 553, "header": "tr|A0A287BS38-1|A0A287BS38_PIG Isoform 1 of Iduronate 2-sulfatase OS=Sus scrofa OX=9823 GN=IDS PE=3 SV=1 CANONICAL=A0A287BS38-1" }, "isoforms": [ { "isoform_ac": "A0A287BS38-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS38/entry#A0A287BS38-1", "sequence": { "sequence": "MLPPGRGLLWLGLVLGSACASLGSAAPGSVATDALNVLLIIVDDLRPSLGCYGDKLVRSPNIDQLASHSLLFQNAFAQQAVCAPSRVSFLTGRRPDTTRLYDFNSYWRAHAGNFSTIPQYFKQNGYVTVSVGKVFHPGISSNHSDDSPYSWSLPPYHPSSEKYENTKTCKGPDGELHANLLCPVDVAEVPEGTLPDKQSTERAIQLLEKLRTSAVPFFLAVGYHKPHIPFRYPQEFQKLYPLENVTLAPDPQVPAGLPPVAYNPWMDIRQREDVQALNLSVPYGPIPTDFQRKIRQSYFASVSYVDTQVGRLLSALDGLELARSTIVALTSDHGWALGEHGEWAKYSNFDVATRVPLLVYVPGRTAPLPEAGGRLFPYIDPFASASESMEPGRQAGDLVELLSLFPTLAGLAGLRVPPRCPVPSFHVELCREGRNLLKYFQFGDLEEEPHARGNPRELVAYSQYPRPADAPQWNSDKPSLKDIKVMGYSIRTVDYRYTVWVGFSPREFLANFSDVHAGELYFVDSDPWQDHNVYNASQGRALPPPLMPTPEGT", "length": 553, "header": "tr|A0A287BS38-1|A0A287BS38_PIG Isoform 1 of Iduronate 2-sulfatase OS=Sus scrofa OX=9823 GN=IDS PE=3 SV=1 CANONICAL=A0A287BS38-1" }, "locus": { "chromosome": "X", "start_pos": 121596354, "end_pos": 121578988, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054944.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054944.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058759.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058759.3" } ] } }, { "isoform_ac": "A0A8W4FK34-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS38/entry#A0A8W4FK34-1", "sequence": { "sequence": "MLPPGRGLLWLGLVLGSACASLGSAAPGSVATDALNVLLIIVDDLRPSLGCYGDKLVRSPNIDQLASHSLLFQNAFAQQAVCAPSRVSFLTGRRPDTTRLYDFNSYWRAHAGNFSTIPQYFKQNGYVTVSVGKVFHPGTTCPAESGLSCFVPESWGPLLGSGLSLQGPLGE", "length": 171, "header": "tr|A0A8W4FK34-1|A0A287BS38_PIG Computationally mapped isoform of Iduronate 2-sulfatase OS=Sus scrofa OX=9823 GN=IDS PE=3 SV=1 CANONICAL=A0A287BS38-1" }, "locus": { "chromosome": "X", "start_pos": 121596354, "end_pos": 121594862, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099970.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099970.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078670.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078670.1" } ] } }, { "isoform_ac": "A0A8W4FL56-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS38/entry#A0A8W4FL56-1", "sequence": { "sequence": "MLPPGRGLLWLGLVLGSACASLGSAAPGSVATDALNVLLIIVDDLRPSLGCYGDKLVRSPNIDQLASHSLLFQNAFAQQAVCAPSRVSFLTGRRPDTTRLYDFNSYWRAHAGNFSTIPQYFKQNGYVTVSVGKVFHPGISSNHSDDSPYSWSLPPYHPSSEKYENTKTCKGPDGELHANLLCPVDVAEVPEGTLPDKQSTERAIQLLEKLRTSAVPFFLAVGYHKPHIPFRYPQEFQKLYPLENVTLAPDPQVPAGLPPVAYNPWMDIRQREDVQALNLSVPYGPIPTDFQRKIRQSYFASVSYVDTQVGRLLSALDGLELARSTIVALTSDHVFVMRIGV", "length": 341, "header": "tr|A0A8W4FL56-1|A0A287BS38_PIG Computationally mapped isoform of Iduronate 2-sulfatase OS=Sus scrofa OX=9823 GN=IDS PE=3 SV=1 CANONICAL=A0A287BS38-1" }, "locus": { "chromosome": "X", "start_pos": 121596354, "end_pos": 121582928, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093603.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093603.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079032.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079032.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 549, "start_aa": "Thr", "end_pos": 549, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr549", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FK34", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK34" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512880", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512880", "resource": "KEGG Pathway" }, { "id": "R-SSC-2024096", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2024096", "resource": "Reactome", "description": "HS-GAG degradation" }, { "id": "R-SSC-2024101", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2024101", "resource": "Reactome", "description": "CS/DS degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9SE69-1", "protein_name": "Iduronate 2-sulfatase", "gene_name": "IDS", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPPPSRSLLWLGLVLGAVCASRGPAAPGNATDPLNVLLIIVDDLRPSLGCYGNKLIRSPNIDQLASRSLLFQNAFAQQAVCAPSRVSFLTGRRPDTTRLYDFNSYWRVHAGNFSTIPQYFKENGYVTMSVGKVFHPGISSNHSDDSPYSWSVPPYHPSSEKYENTKTCRGPDGELHANLLCPVDVVDVPEGTLPDKQSTEQAIQLLGKMKTSASPFFLAVGYHKPHIPFRYPKEFQKLYPLENVSLAPDPQVPTGLPLVAYNPWMDLRQREDIQALNLSVPYGPIPADFQRKIRQSYFACVSYLDTQVGRLLSALDDLQLASSTIVAFTSDHGWALGEHGEWAKYSNFDVTTRVPLMFYVPGRTAPLPVEGEKFFPYLDPFDSVSEVPEPGRQTGDLVELLSLFPTLAGLAGLRVPPRCPIPSFHMELCREGRNLLKLFEDHGEEEEPHVRSNPRELVAYSQYPRPADSPQWNSDKPSLEDIKVMGYSIRTVDYRYTVWVGFNPQEFLANFSDIHAGELYFVASDPLQDHNVYNDSQGGTLPQSFMP", "length": 547 }, "evidence": [ { "id": "A0A287BS38", "url": "https://omabrowser.org/oma/group/A0A287BS38/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1LLW8-1", "protein_name": "Iduronate 2-sulfatase", "gene_name": "Ids", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPPPPPPPTTWRQLSFSLLLGFFCIALVSAAQGNSATDALNILLIIVDDLRPSLGCYGDKLVRSPNIDQLASHSIVFENAFAQQAVCAPSRVSFLTGRRPDTTRLYDFNSYWRVHSGNFSTIPQYFKENGYVTMSVGKVFHPGISSNHSDDYPYSWSFPPYHPSSEKYENTKTCKGQDGKLHTNLLCPVDVADVPEGTLPDKQSTEEAIRLLEKMKTSVSPFFLAVGYHKPHIPFRYPKEFQKLYPLENMTLAPDPHVPDSLPPVAYNPWMDIREREDVQALNISVPYGPIPVDFQRKIRQSYFASVSYLDTQVGHLLSALDDLRLAHNTIIAFMSDHGWALGEHGEWAKYSNFDVTTRVPLMFYVPGKTALLPAAGEKLFPYQDPFDPASELMGAGRRTEDLVELVSLFPTLAGLAGMPVPPWCPIPSFHVELCREGHNLQRYLQLHDLEEDPYLFGNPRELIAYSQYPRPADFPQWNSDKPSLKDIKVMGYSIRTIDYRYTVWVGFSPTEFLANFSDIHAGELYFVDSDPLQDHNVYNDSQHGGLLLSLRP", "length": 554 }, "evidence": [ { "id": "A0A287BS38", "url": "https://omabrowser.org/oma/group/A0A287BS38/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P22304-1", "protein_name": "Iduronate 2-sulfatase", "gene_name": "IDS", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPPPRTGRGLLWLGLVLSSVCVALGSETQANSTTDALNVLLIIVDDLRPSLGCYGDKLVRSPNIDQLASHSLLFQNAFAQQAVCAPSRVSFLTGRRPDTTRLYDFNSYWRVHAGNFSTIPQYFKENGYVTMSVGKVFHPGISSNHTDDSPYSWSFPPYHPSSEKYENTKTCRGPDGELHANLLCPVDVLDVPEGTLPDKQSTEQAIQLLEKMKTSASPFFLAVGYHKPHIPFRYPKEFQKLYPLENITLAPDPEVPDGLPPVAYNPWMDIRQREDVQALNISVPYGPIPVDFQRKIRQSYFASVSYLDTQVGRLLSALDDLQLANSTIIAFTSDHGWALGEHGEWAKYSNFDVATHVPLIFYVPGRTASLPEAGEKLFPYLDPFDSASQLMEPGRQSMDLVELVSLFPTLAGLAGLQVPPRCPVPSFHVELCREGKNLLKHFRFRDLEEDPYLPGNPRELIAYSQYPRPSDIPQWNSDKPSLKDIKIMGYSIRTIDYRYTVWVGFNPDEFLANFSDIHAGELYFVDSDPLQDHNMYNDSQGGDLFQLLMP", "length": 550 }, "evidence": [ { "id": "A0A287BS38", "url": "https://omabrowser.org/oma/group/A0A287BS38/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q08890-1", "protein_name": "Iduronate 2-sulfatase", "gene_name": "Ids", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSPPPPPPIWRQLSFSLLLGSFCIALESAAQGNSATDALNILLIIVDDLRPSLGCYGDKLVRSPNIDQLASHSVLFQNAFAQQAVCAPSRVSFLTGRRPDTTRLYDFNSYWRVHSGNFSTIPQYFKENGYVTMSVGKVFHPGISSNHSDDYPYSWSFPPYHPSSEKYENTKTCKGQDGKLHANLLCPVDVADVPEGTLPDKQSTEEAIRLLEKMKTSASPFFLAVGYHKPHIPFRYPKEFQKLYPLENITLAPDPHVPDSLPPVAYNPWMDIREREDVQALNISVPYGPIPEDFQRKIRQSYFASVSYLDTQVGHVLSALDDLRLAHNTIIAFTSDHGWALGEHGEWAKYSNFDVATRVPLMLYVPGRTAPLPAAGQKLFPYRDPFDPASDWMDAGRHTEDLVELVSLFPTLAGLAGLPVPPRCPIPSFHVELCREGQNLQKHLQLHDLEEEPDLFGNPRELIAYSQYPRPADFPQWNSDKPSLNDIKVMGYSIRTVDYRYTVWVGFDPSEFLANFSDIHAGELYFVDSDPLQDHNVYNDSQHGGLLHSLRP", "length": 552 }, "evidence": [ { "id": "A0A287BS38", "url": "https://omabrowser.org/oma/group/A0A287BS38/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VZP8-1", "protein_name": "Iduronate 2-sulfatase", "gene_name": "Ids", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MITARLLLSLMMPVLLDAAAPPRRPNVVMVIFDDLRPVIGAYGDTLASTPYLDNFARGSHIFTRVYSQQSLCAPSRNSLLTGRRPDTLHLYDFYSYWRTFTGNFTTLPQYFKEHGYYTYSCGKVFHPGLSSNNTDDYPLSWSAPAFRPRTEQFMNSPVCPDKEGILRKNLICPVELQTQPYKTLPDIESVAEALRFVGSRSRHSQEPFFLAMGFHKPHINFRFPRQFLSRFNLSQFYNYTEDSLKPPDMPAVAWNPYTDVRARDDFKHSNISFPYGPISPLQAAQIRQSYYASVSYVDDLFGKLIGGLDLDETVVVALGDHGWSLGEHAEWAKYSNFEVALRVPLIIRSPQFPVAQTKYYHGITELLDVFPTLVDLAGLPKLDKCQSSQELTCGEGKSLYHQLMGLGRADEHVALSQYPRPGMLPTKHPNSDKPKLRNIKIMGYSLRTDIYRYTMWVRFHAQNFSRDWHDVYGEELYDHRLDSGEELNLMPLPQFDDVRQRLRRRLMEMVGS", "length": 512 }, "evidence": [ { "id": "A0A287BS38", "url": "https://omabrowser.org/oma/group/A0A287BS38/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "iduronate-2-sulfatase activity", "id": "GO:0004423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004423", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS38", "url": "https://www.uniprot.org/uniprotkb/A0A287BS38" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS38", "url": "https://www.uniprot.org/uniprotkb/A0A287BS38" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS38", "url": "https://www.uniprot.org/uniprotkb/A0A287BS38" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS38", "url": "https://www.uniprot.org/uniprotkb/A0A287BS38" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "dermatan sulfate proteoglycan catabolic process", "id": "GO:0030209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030209", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS38", "url": "https://www.uniprot.org/uniprotkb/A0A287BS38" } ], "pmid": "" }, { "name": "glycosaminoglycan catabolic process", "id": "GO:0006027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006027", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS38", "url": "https://www.uniprot.org/uniprotkb/A0A287BS38" } ], "pmid": "" }, { "name": "heparan sulfate proteoglycan catabolic process", "id": "GO:0030200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030200", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS38", "url": "https://www.uniprot.org/uniprotkb/A0A287BS38" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS38", "url": "https://www.uniprot.org/uniprotkb/A0A287BS38" } ], "pmid": "" }, { "name": "lysosomal lumen", "id": "GO:0043202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043202", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS38", "url": "https://www.uniprot.org/uniprotkb/A0A287BS38" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" }, { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" }, { "start_pos": 511, "end_pos": 513, "annotation": "n_glycosylation_sequon" }, { "start_pos": 535, "end_pos": 537, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-1678650", "name": "IDS hydrolyses Heparan sulfate chain(5)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "lysosomal lumen", "input_participant_list": [], "output_participant_list": [ "R-ALL-2090055" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1678650", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1678650" } ] }, { "id": "R-SSC-1793182", "name": "IDS hydrolyses dermatan sulfate (Chebi:63517 chain)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "lysosomal lumen", "input_participant_list": [ "R-ALL-2065213" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1793182", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1793182" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-2065213", "participant_name": "ChEBI:63517 chain [lysosomal lumen]", "crossref": [ { "id": "747397", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-2090055", "participant_name": "IdoA-GlcNS3S- group [lysosomal lumen]", "crossref": [ { "id": "63809", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BS38-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 553, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BS38-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BS38" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BS38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BS38" }, { "id": "PF00884", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00884" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sulfatase N-terminal", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 413, "start_aa": "Asn", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 549 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 113, "end_pos": 115 }, { "start_pos": 142, "end_pos": 144 }, { "start_pos": 244, "end_pos": 246 }, { "start_pos": 278, "end_pos": 280 }, { "start_pos": 511, "end_pos": 513 }, { "start_pos": 535, "end_pos": 537 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BS76-1", "uniprot_ac": "A0A287BS76", "uniprot_id": "A0A287BS76_PIG", "mass": { "chemical_mass": 27229.0, 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"database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR18849", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18849", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18849:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18849:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A287BS76", "url": "https://www.uniprot.org/uniprotkb/A0A287BS76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BS76-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS76-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LSLSSSGQNASSQEICPSNSSYSSHVSDSHPGSALSRNRTLYSRSDSGISSLLPSDYFKYLTWHKIEQNDIRGSQLRCPRVREGPSAEGLVFRQEACTLPPRKRVLEKNEWETWLQENWEDCTNLNISFQDLGDPYQVANFNRILRRLIRVETLWLVDNSLVDLSAIRLPSCRVLNMNKNHLTSFKQLPKIPQIQHLFLAENHIETLTGLSSLQCTPLESLTLKRNPCEFHQNYRKQ", "length": 237, "header": "tr|A0A287BS76-1|A0A287BS76_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287BS76-1" }, "isoforms": [ { "isoform_ac": "A0A287BS76-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS76/entry#A0A287BS76-1", "sequence": { "sequence": "LSLSSSGQNASSQEICPSNSSYSSHVSDSHPGSALSRNRTLYSRSDSGISSLLPSDYFKYLTWHKIEQNDIRGSQLRCPRVREGPSAEGLVFRQEACTLPPRKRVLEKNEWETWLQENWEDCTNLNISFQDLGDPYQVANFNRILRRLIRVETLWLVDNSLVDLSAIRLPSCRVLNMNKNHLTSFKQLPKIPQIQHLFLAENHIETLTGLSSLQCTPLESLTLKRNPCEFHQNYRKQ", "length": 237, "header": "tr|A0A287BS76-1|A0A287BS76_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=A0A287BS76-1" }, "locus": { "chromosome": "13", "start_pos": 106736441, "end_pos": 106722051, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048843.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048843.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058978.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058978.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS76", "url": "https://www.uniprot.org/uniprotkb/A0A287BS76" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" }, { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" }, { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" }, { "start_pos": 9, "end_pos": 11, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BS76-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 237, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BS76-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BS76" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 }, { "start_pos": 19, "end_pos": 21 }, { "start_pos": 38, "end_pos": 40 }, { "start_pos": 9, "end_pos": 11 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"https://www.ncbi.nlm.nih.gov/protein/XP_003360164" }, "gene_names": [ { "name": "UBN2", "type": "recommended", "evidence": [ { "id": "A0A287BS80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BS80" } ] }, { "name": "UBN2", "type": "synonym", "evidence": [ { "id": "XP_003360164", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360164" } ] } ], "protein_names": [ { "name": "Ubinuclein 2", "type": "synonym", "evidence": [ { "id": "A0A287BS80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BS80/entry#names_and_taxonomy" } ] }, { "name": "ubinuclein-2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003360164", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360164" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003360164", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360164", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BS80", "url": "https://www.uniprot.org/uniprotkb/A0A287BS80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BS80-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS80-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Transcript", "id": "ENSSSCT00000102188.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102188.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077973.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077973.1" } ] } }, { "isoform_ac": "F1S177-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSE0/entry#F1S177-1", "sequence": { "sequence": "MKSKDIEASGFNGTAAFMEVRVQSIVVEFILTHVDQLFGGAALSGGEVESGWRPLPGARVLGSPEDLMPRSLPYHLPNILQAGDGPPQMRPYHTIIEIAEHKRKGSLKVRKWRSIFNLGRSGHETKRKFPRGAEDREDKSDKGTLRPAKSMDSLSAVAGANDEPEGLVGSGSPRPSPLLPESLENDSAEAAEGEQEPEAEALGGTSSEPGTPRTGRSAIRAGGNSHAERRAGVHISEPYDVNLPPHISSMLNISPHIISNISLAGFTRGLEYPALQPRPSPASGPGPGPGLGPGPPDENLEASPAPGPLADSSPVDVAPALEDCLSQEVQDSFSFLEDSSSSEPEWVGVEDGEVAKAEPAGAAFSPGEDDPGMGYLEELLGVGPQVEEFSVEPPLDDLSLDEAQFVLAPSCCSLDSPEPRPEAEEESGEEVFLSAYDDLSPLLGPKPLTWEGPGSLEEKVAGCGRQEAPGQGDGEQAFQEDREGKEAEPGSRWDIREEAERRPKTEVEGEEASEEGVEPEGSQKVIDSLREGGGEETEDTEAKEEESKGQEEDESKEEVKGVEETGVEQGKDKEKERNTEREDEAEEGDEAQVEARREPEHGAQEKQIAGESWEVVHKEEAEREDEVKGQRGNEDQETREDQGDGEDSRIPEAAAEGRAGEVSQEQETGDGEAEGDQRAASDHLEEGSLPDGSDIESLEVDSAREGSAQSTETDQAAPQPPQSEEMEPEGQPSPLGAAGGVGMRLASTLVQVQQVRSVPVVPPKPQFARMPTAMCGKIHVAPANPCPRPGRLDGTPGERAWGTRASRSSWRNGGSLSFDAAVALARDRQRTEVQSVRRTQTCTGAGDYSLIPKTSPYSTIPAHSSRPLSCLELPAEGTEGSGSRSRLSLPPKEPQLPDPLAPPQRRSYAFETQANSGKGKGL", "length": 922, "header": "tr|F1S177-1|A0A287BSE0_PIG Computationally mapped isoform of Rho GTPase activating protein 30 OS=Sus scrofa OX=9823 GN=ARHGAP30 PE=4 SV=4 CANONICAL=A0A287BSE0-1" }, "locus": { "chromosome": "4", "start_pos": 89393426, "end_pos": 89375829, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006982.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006982.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006792.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006792.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith 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"database": "Ensembl Transcript", "id": "ENSSSCT00000056653.2", "url": "https://www.ensembl.org/id/ENSSSCT00000056653.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059368.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059368.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BSG2-1", "uniprot_ac": "A0A287BSG2", "uniprot_id": "A0A287BSG2_PIG", "mass": { "chemical_mass": 43374.0, "monoisotopic_mass": 43374.0 }, "refseq": {}, "gene_names": [ { "name": "FAM228A", "type": "recommended", "evidence": [ { "id": "A0A287BSG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSG2" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 228 member A", "type": "synonym", "evidence": [ { "id": "A0A287BSG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSG2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BSG2", "url": "https://www.uniprot.org/uniprotkb/A0A287BSG2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM228A", "url": "https://www.uniprot.org/uniprotkb/A0A287BSG2", "locus": {} } ], "crossref": [ { "id": "A0A287BSG2", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BSG2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008582", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008582", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR040046", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040046", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR28584", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28584", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28584:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28584:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28229", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28229", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BSG2", "url": "https://www.uniprot.org/uniprotkb/A0A287BSG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSG2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAMKIPNFGEHFGPEQLKKWPEPESVDLMEALAREDIDEAVHAVLFRENYVAKGLLLWHRFDPWPRKFHMLQERRKEMIHRKWTENVAEPLQQRIVAKVISHKGLEKTKRENFEDFLKHTNKTEIIFGGCYDSEGYNPFYMTRKDPNYGKVMVPPFCDPLFRRQQEVDEEQRAIFQYRTGKQCTFEEFKELEKARRYARLPQITFTLCSMVPKARPKASARPVGSKTRGKCSSEKLICAEEKYLPDKEKKTISLSQTIFERQFCSSKLSQESKRREKKGLALGTRQPRPRSGVAGESQQRQGSQPAKRRVMTAEVLAQHLAALQLGDRVQTGTVKITTYEPTEYPAYLPNSKNSKHSSLFMRKEGDNPKGAGW", "length": 374, "header": "tr|A0A287BSG2-1|A0A287BSG2_PIG Isoform 1 of Family with sequence similarity 228 member A OS=Sus scrofa OX=9823 GN=FAM228A PE=3 SV=2 CANONICAL=A0A287BSG2-1" }, "isoforms": [ { "isoform_ac": "A0A287BSG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSG2/entry#A0A287BSG2-1", "sequence": { "sequence": "MAAMKIPNFGEHFGPEQLKKWPEPESVDLMEALAREDIDEAVHAVLFRENYVAKGLLLWHRFDPWPRKFHMLQERRKEMIHRKWTENVAEPLQQRIVAKVISHKGLEKTKRENFEDFLKHTNKTEIIFGGCYDSEGYNPFYMTRKDPNYGKVMVPPFCDPLFRRQQEVDEEQRAIFQYRTGKQCTFEEFKELEKARRYARLPQITFTLCSMVPKARPKASARPVGSKTRGKCSSEKLICAEEKYLPDKEKKTISLSQTIFERQFCSSKLSQESKRREKKGLALGTRQPRPRSGVAGESQQRQGSQPAKRRVMTAEVLAQHLAALQLGDRVQTGTVKITTYEPTEYPAYLPNSKNSKHSSLFMRKEGDNPKGAGW", "length": 374, "header": "tr|A0A287BSG2-1|A0A287BSG2_PIG Isoform 1 of Family with sequence similarity 228 member A OS=Sus scrofa OX=9823 GN=FAM228A PE=3 SV=2 CANONICAL=A0A287BSG2-1" }, "locus": { "chromosome": "3", "start_pos": 114536160, "end_pos": 114501937, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066035.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066035.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059591.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059591.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSG2", "url": "https://www.uniprot.org/uniprotkb/A0A287BSG2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 122, "end_pos": 124, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BSG2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 374, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BSG2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BSG2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], 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Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSI3", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525215", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525215", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A3KN25-1", "protein_name": "Gap junction gamma-3 protein", "gene_name": "GJC3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MCGSFLRRVAAEESRHPTPVGRLLLPALLGLRLVLLAAGGTGVFGGGEEQSEFVCHTQQAGCKAVCYDAFHPLSPLRFWAFQVTLVAVPSALYMGFILYHVIWHWEASEKVKTEEETLSQGEKGGEASRAGSSRLLWAYVAQLGVRLALEGAALGGQYHLYGFRMPSSFVCRLEPCLGSTNCYLSRPSEKSIFLKTMFGVTGLCLLFTLLELVLLGLGRWWRIWRHKSPSSNYSPTSQSAKRCKAPTDNFPVVEIRERPGEAGERGSEVPLSARP", "length": 275 }, "evidence": [ { "id": "A0A287BSI3", "url": "https://omabrowser.org/oma/group/A0A287BSI3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8NFK1-1", "protein_name": "Gap junction gamma-3 protein", "gene_name": "GJC3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MCGRFLRRLLAEESRRSTPVGRLLLPVLLGFRLVLLAASGPGVYGDEQSEFVCHTQQPGCKAACFDAFHPLSPLRFWVFQVILVAVPSALYMGFTLYHVIWHWELSGKGKEEETLIQGREGNTDVPGAGSLRLLWAYVAQLGARLVLEGAALGLQYHLYGFQMPSSFACRREPCLGSITCNLSRPSEKTIFLKTMFGVSGFCLLFTFLELVLLGLGRWWRTWKHKSSSSKYFLTSESTRRHKKATDSLPVVETKEQFQEAVPGRSLAQEKQRPVGPRDA", "length": 279 }, "evidence": [ { "id": "A0A287BSI3", "url": "https://omabrowser.org/oma/group/A0A287BSI3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q921C1-1", "protein_name": "Gap junction gamma-3 protein", "gene_name": "Gjc3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLELPIKCRMCGRFLRQLLAQESQHSTPVGRFLLPMLMGFRLLILVSSGPGVFGNDENEFICHLGQPGCKTICYDVFRPLSPLRFWAFQVILMAVPSAIYVAFTLYHVIGYWEVPGKENKEQETQISKGDHSKDVSGAKSLKLLWAYVAHLGVRLALEGAALGVQYNLYGFKMSSTFICREDPCIGSTTCFQSHPSEKTIFLNIMFGISGACFLFIFLELALLGLGRFWRIYKHKLSFLKKLPTSESSVRSKDTTDELSVVEAKEPF", "length": 269 }, "evidence": [ { "id": "A0A287BSI3", "url": "https://omabrowser.org/oma/group/A0A287BSI3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell-cell signaling", "id": "GO:0007267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007267", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSI3", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "connexin complex", "id": "GO:0005922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005922", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSI3", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "gap junction channel activity", "id": "GO:0005243", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005243", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSI3", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BSI3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 274, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BSI3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BSI3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A287BSI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI3" }, { "id": "SM00037", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00037" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Connexin N-terminal", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 75, "start_aa": "Gly", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287BSI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI3" }, { "id": "SM01089", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Connexin cysteine-rich", "eco_id": "ECO_0000259", "start_pos": 148, "end_pos": 214, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], 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"https://www.ncbi.nlm.nih.gov/protein/XP_020923067" } ] } ], "protein_names": [ { "name": "small monomeric GTPase", "type": "recommended", "evidence": [ { "id": "A0A287BSI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI5/entry#names_and_taxonomy" } ] }, { "name": "3.6.5.2", "type": "synonym", "evidence": [ { "id": "A0A287BSI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI5/entry#names_and_taxonomy" } ] }, { "name": "RAS like family 10 member B", "type": "synonym", "evidence": [ { "id": "XP_020923067", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923067" } ] }, { "name": "ras-like protein family member 10A", "type": "synonym", "evidence": [ { "id": "XP_020923067", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923067" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BSI5", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RASL10B", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI5", "locus": { "chromosome": "12", "start_pos": 39783729, "end_pos": 39795069, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036746", "url": "https://www.ensembl.org/id/ENSSSCG00000036746" } ] } } ], "crossref": [ { "id": "A0A287BSI5", "url": "https://alphafold.ebi.ac.uk/entry/A0A287BSI5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000036746", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036746", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04142", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04142", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516934", "url": "https://www.ncbi.nlm.nih.gov/gene/100516934", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052661", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052661", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IEMEIHI", "url": "https://omabrowser.org/oma/group/IEMEIHI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46350", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46350", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46350:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46350:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020923067", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923067", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BSI5", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVSTYRVAVLGARGVGKSAIVRQFLYNEFSEVCVPTPARRLYLPAVVMNGHVHDLQILDFPPISAFPVNTLQEWADACCRGLRSVHAYILVYDICCFDSFEYVKTIRQQILETRVIGTSETPIIIVGNKRDLQRGRVIPRWNVSHLVRKTWKCGYVECSAKYNWHILLLFSELLKSVGCARCKHVHAALRFQGALRRNRCAIM", "length": 203, "header": "tr|A0A287BSI5-1|A0A287BSI5_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RASL10B PE=3 SV=1 CANONICAL=A0A287BSI5-1" }, "isoforms": [ { "isoform_ac": "A0A287BSI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI5/entry#A0A287BSI5-1", "sequence": { "sequence": "MVSTYRVAVLGARGVGKSAIVRQFLYNEFSEVCVPTPARRLYLPAVVMNGHVHDLQILDFPPISAFPVNTLQEWADACCRGLRSVHAYILVYDICCFDSFEYVKTIRQQILETRVIGTSETPIIIVGNKRDLQRGRVIPRWNVSHLVRKTWKCGYVECSAKYNWHILLLFSELLKSVGCARCKHVHAALRFQGALRRNRCAIM", "length": 203, "header": "tr|A0A287BSI5-1|A0A287BSI5_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RASL10B PE=3 SV=1 CANONICAL=A0A287BSI5-1" }, "locus": { "chromosome": "12", "start_pos": 39791807, "end_pos": 39785939, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059116.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059116.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044162.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044162.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 36, "start_aa": "Thr", "end_pos": 36, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr36", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSI5", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AHZ6-1", "protein_name": "RAS-like, family 10, member B", "gene_name": "Rasl10b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSTYRVAVLGARGVGKSAIVRQFLYNEFSEVCVPTTARRLYLPAVVMNGHVHDLQILDFPPISAFPVNTLQKGQQDRLRPEKECSQQLWRPQPDLLPKGLSSQEWADACCRGLRSVHAYILVYDICCFDSFEYVKTIRQQILETRVIGTSETPIIIVGNKRDLQRGRVIPRWNVSHLVRKTWKCGYVECSAKYNWHILLLFSELLKSVGCARCKHVHAALRFQGALRRNRCAIM", "length": 235 }, "evidence": [ { "id": "A0A287BSI5", "url": "https://omabrowser.org/oma/group/A0A287BSI5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V1API8-1", "protein_name": "small monomeric GTPase", "gene_name": "RASL10B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVATFKIAVLGAQGVGKSAIVRQFLYNEFSEVCVPTTARRVYLPAVVMNGHVHDLQIMDFPPIPAFPVNTLQEWADVCCRGLRSVHAYILVYDICCFDSFEYIKTIRQQILETRVIGTSETPIIIVGNKRDLQRGRVIPRWNVSNLVKKTWKCGYIECSAKYNWHILLLFSELLKSVGCARCKHVHTTIRFQGALRRNRCTIIITPLPKNVGRGLAANRGQDIPIHSSNGAPLSSP", "length": 236 }, "evidence": [ { "id": "A0A287BSI5", "url": "https://omabrowser.org/oma/group/A0A287BSI5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3I8B8-1", "protein_name": "small monomeric GTPase", "gene_name": "Rasl10b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVSTYRVAVLGARGVGKSAIVRQFLYNEFSEVCVPTTARRLYLPAVVMNGHVHDLQILDFPPISAFPVNTLQEWADACCRGLRSVHAYILVYDICCFDSFEYVKTIRQQILETRVIGTSETPIIIVGNKRDLQRGRVIPRWNVSHLVRKTWKCGYVECSAKYNWHILLLFSELLKSVGCARCKHVHAALRFQGALRRNRCAIM", "length": 203 }, "evidence": [ { "id": "A0A287BSI5", "url": "https://omabrowser.org/oma/group/A0A287BSI5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5SSG5-1", "protein_name": "Ras-like protein family member 10B", "gene_name": "Rasl10b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSTYRVAVLGARGVGKSAIVRQFLYNEFSEVCVPTTTRRLYLPAVVMNGHVHDLQILDFPPISAFPVNTLQEWADACCRGLRSVHAYILVYDICCFDSFEYVKTIRQQILETRVIGTSETPIIIVGNKRDLQRGRVIPRWNVSHLVRKTWKCGYVECSAKYNWHILLLFSELLKSVGCARCKHVHAALRFQGALRRNRCAIM", "length": 203 }, "evidence": [ { "id": "A0A287BSI5", "url": "https://omabrowser.org/oma/group/A0A287BSI5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96S79-1", "protein_name": "Ras-like protein family member 10B", "gene_name": "RASL10B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVSTYRVAVLGARGVGKSAIVRQFLYNEFSEVCVPTTARRLYLPAVVMNGHVHDLQILDFPPISAFPVNTLQEWADTCCRGLRSVHAYILVYDICCFDSFEYVKTIRQQILETRVIGTSETPIIIVGNKRDLQRGRVIPRWNVSHLVRKTWKCGYVECSAKYNWHILLLFSELLKSVGCARCKHVHAALRFQGALRRNRCAIM", "length": 203 }, "evidence": [ { "id": "A0A287BSI5", "url": "https://omabrowser.org/oma/group/A0A287BSI5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of systemic arterial blood pressure by atrial natriuretic peptide", "id": "GO:0003050", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003050", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSI5", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI5" } ], "pmid": "" }, { "name": "positive regulation of peptide hormone secretion", "id": "GO:0090277", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090277", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSI5", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSI5", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI5" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSI5", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSI5", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI5" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSI5", "url": "https://www.uniprot.org/uniprotkb/A0A287BSI5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A287BSI5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 203, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A287BSI5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A287BSI5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 36 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 142, "end_pos": 144 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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}, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A287BSJ3-1", "uniprot_ac": "A0A287BSJ3", "uniprot_id": "A0A287BSJ3_PIG", "mass": { "chemical_mass": 38777.0, "monoisotopic_mass": 38777.0 }, "refseq": { "ac": "XP_003358867", "name": "PI-PLC X domain-containing protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358867" }, "gene_names": [ { "name": "PLCXD2", "type": "recommended", "evidence": [ { "id": "A0A287BSJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSJ3" } ] }, { "name": "PLCXD2", "type": "synonym", "evidence": [ { "id": "XP_003358867", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358867" } ] } ], "protein_names": [ { "name": "PI-PLC X domain-containing protein 2", "type": "synonym", "evidence": [ { "id": "XP_003358867", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358867" } ] }, { "name": "Phosphatidylinositol specific phospholipase C X domain containing 2", "type": "synonym", "evidence": [ { "id": "A0A287BSJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287BSJ3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A287BSJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287BSJ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLCXD2", "url": "https://www.uniprot.org/uniprotkb/A0A287BSJ3", "locus": { "chromosome": "13", "start_pos": 148033704, "end_pos": 148087744, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000056685", "url": "https://www.ensembl.org/id/ENSSSCG00000056685" } ] } } ], "crossref": [ { "id": "cd08616", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08616", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518335", "url": "https://www.ncbi.nlm.nih.gov/gene/100518335", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518335", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518335", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NHFYAME", "url": "https://omabrowser.org/oma/group/NHFYAME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BSJ3", "url": "https://www.orthodb.org/?gene=A0A287BSJ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13593", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13593", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13593:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13593:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003358867", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358867", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BSJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287BSJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLAVRKVRRKLRMGTICSPNPSGTKTSLEVCNADWMASLPPHLHNVPLSHLAIPGSHDSFSYWVDEKSPVGPDQTPAIKRLARISLVKKLMKKWSVTQNLTFREQLDAGIRYFDLRVSSKPGDADQEIYFIHGLFGIRVWDGLMEIDSFLTQHPQEIVFLDFNHFYAMDEAHHQRLILRIQEAFGNKLCSACSVESMTLQTLWEKRCQVLIFYHCPFYKQYPFLWPGKKIPAPWANTTSVHKLILFLETTLSERAPRGSFHVSQAILTPRVKTIARGLVGGLKNTLVHRNLPAILDWVKTQKPGAMGVNIITSDFVDLVDFATTVIELNDLLQEDRALAKC", "length": 341, "header": "tr|A0A287BSJ3-1|A0A287BSJ3_PIG Isoform 1 of Phosphatidylinositol specific phospholipase C X domain containing 2 OS=Sus scrofa OX=9823 GN=PLCXD2 PE=4 SV=1 CANONICAL=A0A287BSJ3-1" }, "isoforms": [ { "isoform_ac": "A0A287BSJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSJ3/entry#A0A287BSJ3-1", "sequence": { "sequence": "MLAVRKVRRKLRMGTICSPNPSGTKTSLEVCNADWMASLPPHLHNVPLSHLAIPGSHDSFSYWVDEKSPVGPDQTPAIKRLARISLVKKLMKKWSVTQNLTFREQLDAGIRYFDLRVSSKPGDADQEIYFIHGLFGIRVWDGLMEIDSFLTQHPQEIVFLDFNHFYAMDEAHHQRLILRIQEAFGNKLCSACSVESMTLQTLWEKRCQVLIFYHCPFYKQYPFLWPGKKIPAPWANTTSVHKLILFLETTLSERAPRGSFHVSQAILTPRVKTIARGLVGGLKNTLVHRNLPAILDWVKTQKPGAMGVNIITSDFVDLVDFATTVIELNDLLQEDRALAKC", "length": 341, "header": "tr|A0A287BSJ3-1|A0A287BSJ3_PIG Isoform 1 of Phosphatidylinositol specific phospholipase C X domain containing 2 OS=Sus scrofa OX=9823 GN=PLCXD2 PE=4 SV=1 CANONICAL=A0A287BSJ3-1" }, "locus": { "chromosome": "13", "start_pos": 148087176, "end_pos": 148039648, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043186.1", "url": "https://www.ensembl.org/id/ENSSSCT00000043186.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059096.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059096.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287BSJ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518335", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518335", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MHP5-1", "protein_name": "PI-PLC X domain-containing protein 2 isoform X1", "gene_name": "Plcxd2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLAFRKARRKLRMGTICSPNPSGTKAASEVCNADWMASLPPHLHNVPLSNLAIPGSHDSFSYWVDEKSPVGPDQTQAVKRLARISLVKKLMKKWSVTQNLTFREQLEAGIRYFDLRVSSKPGDTDQEIYFIHGLFGIKVWDGLMEIDAFLSQHPQEIIFLDFNHFYAMDEAHHKCLVLRIQEAFGNKLCPACSVESMTLQSLWEKKYQVLIFYHCPFYKQYPFLWPGKKIPAPWANTTSVNKLIPFLETTLSERAPRGAFHVSQAILTPRVKTIARGLVGGLKNTLVHRNLPAILDWVKTQKPGAMGVNIITSDFVDLVDFATTVIELNDLLEDRALTKC", "length": 340 }, "evidence": [ { "id": "A0A287BSJ3", "url": "https://omabrowser.org/oma/group/A0A287BSJ3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "B2RXA1-1", "protein_name": "PI-PLC X domain-containing protein 2", "gene_name": "Plcxd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLAFRKARRKLRMGTICSPNPSGTKTASEVCNADWMASLPAHLHNVPLSNLAIPGSHDSFSYWVDEKSPVGPDQTQAVIRLARISLVKKLMKKWSVTQNLTFREQLEAGIRYFDLRVSSKPGDTDQEIYFIHGLFGIKVWDGLMEIDAFLTQHPQEIIFLDFNHFYAMDESHHKCLVLRIQEAFGNKLCPACSVESMTLRSLWEKKYQVLIFYHCPFYKQYPFLWPGKKIPAPWANTTSVQKLILFLETTLSERAPRGAFHVSQAILTPRVKTIARGLVGGLKNTLVHRNLPAILDWVKTQKPGAMGVNIITSDFVDLIDFATTVIELNDLLEDRALTKC", "length": 340 }, "evidence": [ { "id": "A0A287BSJ3", "url": "https://omabrowser.org/oma/group/A0A287BSJ3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D4A4P6-1", "protein_name": "Phosphatidylinositol-specific phospholipase C, X domain containing 2", "gene_name": "Plcxd2", 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"MFRDVAIDFSQEEWEYLDSAQRDLYRDVMLENYSNFVSLDLPSRGTNKDLSPKKDTSETELSQWEMSARLDNCNLEESSSRDYLEVKRTLEKPQENQEECFRQGITIYEKMSIFNQHTYLSQHAMCHSTEKPYKCKECGKAFRRAAHLTQHQSIHTGEKPYECMQCGKAFSRDSQLSLHQRLHTGEKPYSCKECGKAFTQSSQLILHHRTHTGEKPYKCEECGRDFIRSSQLSRHQKVHTGEKPYKCKECGKAFTQNSQLTLHQRLHTGEKLYECKECRKVFTQLSQLILHKRIHTGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECQECGKAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGRTFSHGSQLSQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHERIHTGEKPYKCKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAFARGLLLIQHQRIHTGEKPYQCKECGKAFIRGSQLTQHQRIHTGEKPYECKECGKAFSHGSQLTLHQRIHTGEKPYECKECRKAFTQSSHLSRHQRVHTGEKPYQCKECGKAFTRGSQLTQHQRIHISEKSFEYKECGIDFNRGSQVYI", "length": 682, "header": "tr|A0A287BT06-1|A0A287BT06_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC102164547 PE=3 SV=3 CANONICAL=A0A287BT06-1" }, "isoforms": [ { "isoform_ac": "A0A287BT06-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT06/entry#A0A287BT06-1", "sequence": { "sequence": 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"A0A287BT06", "url": "https://www.uniprot.org/uniprotkb/A0A287BT06" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A287BT06", "url": "https://www.uniprot.org/uniprotkb/A0A287BT06" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A287BT06", "url": "https://www.uniprot.org/uniprotkb/A0A287BT06" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", 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"MSAQGDCEFLVQRARELVQQDLWAAKAWLITARSLYPTDFNIQYEMYTIERNAERTATAGRLLYDMFVNFPDQPVVWREISLITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFPETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYVTRSTQIENQHQGAQETSDLMSPSKRSSQKYIIEGLTEKSSQIVDPWERLFKILNVVGARCEWQMDKGRRSYSDILHRMKDLCRYMNNFDSEAHAKYKNQVVYSTMLVFFKNAFQYVNSIQPSLFQGPNAPSQVPLVLLEDVANVYGDVEVDRNKHIHKKRKLAEGREKTMSSDDEDCSTKGRNRHIVVNKAELANSIEVLESFKLARESWELLCSLEFLDKEFTRICLAWKTDTWLWLRIFLNDVIIYQGQYKKAIASLHHLAALQGSLPQPPISGQGTLEHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKIKPKFRKGSDLKLLPCTSKAILPYCLHLMLACFKLRAFTDSRDDMALGHVIVLLQQEWPRGEALFLKAVSKICQQGNFQYENFFNYVTSTTRSPGVSPRA", "length": 639, "header": "tr|F1SE47-1|A0A287BT48_PIG Computationally mapped isoform of Integrator complex subunit 10 OS=Sus scrofa OX=9823 GN=INTS10 PE=3 SV=3 CANONICAL=A0A287BT48-1" }, "locus": { "chromosome": "17", "start_pos": 12087572, "end_pos": 12042619, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007672.4", 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"https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100739328", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739328", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M7X0-1", "protein_name": "G-protein coupled receptor family C group 5 member D", "gene_name": "Gprc5d", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYEDCVKSTEDYYLFCDNEGPWGIVLESLAVIGIVVTILLLLAFLFLMRKVQDCSQWNVMPTQFLFLLSVLGLFGLAFAFIIQLNQQTAPVRYFLFGVLFAICFSCLLAHASNLVKLVRGRVSFCWTTILFIAIGVSLLQIIIAIEYVTLIMTRGLMFVHMTPYQLNVDFVCLLIYVLFLMALTFFVSKATFCGPCENWKQHGRLIFATVLVSIIIWVVWISMLLRGNPQLQRQPQWDDAVICIGLVTNAWVFLLLYIIPELSILYRSCRQECPPQGNACQVPVYQRSFRMENQELSRARDSDGAEEDVALTAHGTPIQLQTADPSPEYLIPQATLSPPQDAGV", "length": 344 }, "evidence": [ { "id": "A0A287BT75", "url": "https://omabrowser.org/oma/group/A0A287BT75/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050757", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050757", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100624924", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624924", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BTA9", "url": "https://www.orthodb.org/?gene=A0A287BTA9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10730", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10730", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10730:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10730:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01755", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01755", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13704", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13704", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1650814", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003482786", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482786", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BTA9", "url": "https://www.uniprot.org/uniprotkb/A0A287BTA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BTA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTA9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAARPAAPLAWALLLVSWALLRGGCRARFAAEADPEDDEEEAVVFPESSLQRPTVLVAILARNAAHSLPHFLGCLERLDYPKSRMAIWAATDHNVDNTTEILREWLKNVQRAYHYVEWRPMDEPESYPDEIGPKHWPGSRFAHVMKLRQAALRTAREKWSDYILFIDVDNFLTNPQTLSLLMAENKTIVAPMLESRGLYSNFWCGITPQGFYKRTPDYLQIREWKRLGCFPVPMVHSTFLIDLRKEASDKLMFYPPHQDYTWTFDDIIVFAFSSRQAGIQMYLCNTEHYGYLPIPLKPHQTLQEDLENLIHVQIEAMIDHPPMEPSQFVSVVPKYPDKMGFDEIFMINLKRRKDRRDRMLRTLYEQEIEVKIVEAVDGKALNTSQLKALNIEMLPGYRDPYSSRPLTRGEIGCFLSHYSIWKEVIDRELEKTLVIEDDVRFEHQFKKKLMKLMDDIDRVQLDWELIYIGRKRMQVKEPEKAVPNVANLVEADYSYWTLGYVISLEGAQKLVGADPFGKMLPVDEFLPIMYNKHPVAEYMEHYESRDLKAFSAEPLLIYPTHYTGQPGYLSDTETSTIWDNETVATDWDRTHAWKSRKQGRIHRNAKNTEALPPPASLDTAPSRDEL", "length": 626, "header": "tr|A0A287BTA9-1|A0A287BTA9_PIG Isoform 1 of Collagen beta(1-O)galactosyltransferase 2 OS=Sus scrofa OX=9823 GN=COLGALT2 PE=3 SV=1 CANONICAL=A0A287BTA9-1" }, "isoforms": [ { "isoform_ac": "A0A287BTA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTA9/entry#A0A287BTA9-1", "sequence": { "sequence": 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"https://www.ensembl.org/id/ENSSSCT00000060530.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059431.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059431.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BTA9", "url": 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"reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MSMB", "url": "https://www.uniprot.org/uniprotkb/A0A2C9F3B6", "locus": { "chromosome": "14", "start_pos": 90533103, "end_pos": 90582765, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010400", "url": "https://www.ensembl.org/id/ENSSSCG00000010400" } ] } } ], "crossref": [ { "id": "A0A2C9F3B6", "url": "https://alphafold.ebi.ac.uk/entry/A0A2C9F3B6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010400", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010400", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008735", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008735", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ETEIICC", "url": "https://omabrowser.org/oma/group/ETEIICC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10500", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10500", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10500:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10500:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05825", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05825", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A2C9F3B6", "url": "https://www.uniprot.org/uniprotkb/A0A2C9F3B6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A2C9F3B6-1", "url": "https://www.uniprot.org/uniprotkb/A0A2C9F3B6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHMPERTPAHHNEILLGTLVVLATFVTLCNSQCYFIPNQSLKPNECQDLKGVSHPLNSVWKTKDCEECTCGQDAISCCNTAAIPTGYDTNKCQKILNKKTCTYTVVEKKDPGKTCDVTGWVL", "length": 122, "header": "tr|A0A2C9F3B6-1|A0A2C9F3B6_PIG Isoform 1 of Beta-microseminoprotein OS=Sus scrofa OX=9823 GN=MSMB PE=3 SV=1 CANONICAL=A0A2C9F3B6-1" }, "isoforms": [ { "isoform_ac": "A0A2C9F3B6-1", "url": "https://www.uniprot.org/uniprotkb/A0A2C9F3B6/entry#A0A2C9F3B6-1", "sequence": { "sequence": "MHMPERTPAHHNEILLGTLVVLATFVTLCNSQCYFIPNQSLKPNECQDLKGVSHPLNSVWKTKDCEECTCGQDAISCCNTAAIPTGYDTNKCQKILNKKTCTYTVVEKKDPGKTCDVTGWVL", "length": 122, "header": "tr|A0A2C9F3B6-1|A0A2C9F3B6_PIG Isoform 1 of Beta-microseminoprotein OS=Sus scrofa OX=9823 GN=MSMB PE=3 SV=1 CANONICAL=A0A2C9F3B6-1" }, "locus": { "chromosome": "14", "start_pos": 90542308, "end_pos": 90533236, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011384.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011384.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011089.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011089.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A2C9F3B6", "url": "https://www.uniprot.org/uniprotkb/A0A2C9F3B6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZWT8-1", "protein_name": "Microseminoprotein beta", "gene_name": "MSMB", "tax_id": 9031, "organism": "Gallus gallus", 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGF", "length": 837, "header": "tr|A0A2C9F3G2-1|A0A2C9F3G2_PIG Isoform 1 of Ubiquitin C OS=Sus scrofa OX=9823 GN=UBC PE=3 SV=2 CANONICAL=A0A2C9F3G2-1" }, "isoforms": [ { "isoform_ac": "A0A2C9F3G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A2C9F3G2/entry#A0A2C9F3G2-1", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGF", "length": 837, "header": "tr|A0A2C9F3G2-1|A0A2C9F3G2_PIG Isoform 1 of Ubiquitin C OS=Sus scrofa OX=9823 GN=UBC PE=3 SV=2 CANONICAL=A0A2C9F3G2-1" }, "locus": { "chromosome": "14", "start_pos": 28260699, "end_pos": 28258189, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031057.3", "url": "https://www.ensembl.org/id/ENSSSCT00000031057.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026622.3", "url": "https://www.ensembl.org/id/ENSSSCP00000026622.3" } ] } }, { "isoform_ac": "A0A5G2QDJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A2C9F3G2/entry#A0A5G2QDJ2-1", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGF", "length": 837, "header": "tr|A0A5G2QDJ2-1|A0A2C9F3G2_PIG Computationally mapped isoform of Ubiquitin C OS=Sus scrofa OX=9823 GN=UBC PE=3 SV=1 CANONICAL=A0A2C9F3G2-1" }, "locus": { "chromosome": "14", "start_pos": 28260699, "end_pos": 28257961, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090526.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090526.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062692.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062692.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8866652", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866652", "resource": "Reactome", "description": "Synthesis of active ubiquitin: roles of E1 and E2 enzymes" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A2C9F3G2", "url": "https://www.uniprot.org/uniprotkb/A0A2C9F3G2" } ], "pmid": "" }, { "name": "cytosolic ribosome", "id": "GO:0022626", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022626", "evidence": [ { "database": "UniProtKB", "id": "A0A2C9F3G2", "url": "https://www.uniprot.org/uniprotkb/A0A2C9F3G2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A2C9F3G2", "url": "https://www.uniprot.org/uniprotkb/A0A2C9F3G2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A2C9F3G2", "url": "https://www.uniprot.org/uniprotkb/A0A2C9F3G2" } ], "pmid": "" }, { "name": "modification-dependent protein catabolic process", "id": "GO:0019941", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019941", "evidence": [ { "database": "UniProtKB", "id": "A0A2C9F3G2", "url": "https://www.uniprot.org/uniprotkb/A0A2C9F3G2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A2C9F3G2", "url": "https://www.uniprot.org/uniprotkb/A0A2C9F3G2" } ], "pmid": "" }, { "name": "protein tag activity", "id": "GO:0031386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031386", "evidence": [ { "database": "UniProtKB", "id": "A0A2C9F3G2", "url": "https://www.uniprot.org/uniprotkb/A0A2C9F3G2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A2C9F3G2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 837, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A2C9F3G2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A2C9F3G2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A2C9F3G2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A2C9F3G2" }, { "id": "PS50053", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50053" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ubiquitin-like", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 76, "start_aa": "Met", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480DIL6-1", "uniprot_ac": "A0A480DIL6", "uniprot_id": "A0A480DIL6_PIG", "mass": { "chemical_mass": 153365.0, "monoisotopic_mass": 153365.0 }, "refseq": { "ac": "XP_020919133", "name": "coiled-coil domain-containing protein 171", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919133" }, "gene_names": [ { "name": "CCDC171", "type": "recommended", "evidence": [ { "id": "A0A480DIL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480DIL6" } ] }, { "name": "CCDC171", "type": "synonym", "evidence": [ { "id": "XP_020919133", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919133" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 171", "type": "synonym", "evidence": [ { "id": "A0A480DIL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480DIL6/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 171", "type": "synonym", "evidence": [ { "id": "XP_020919133", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919133" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480DIL6", "url": "https://www.uniprot.org/uniprotkb/A0A480DIL6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC171", "url": "https://www.uniprot.org/uniprotkb/A0A480DIL6", "locus": { "chromosome": "1", "start_pos": 206792212, "end_pos": 207142837, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005182", "url": "https://www.ensembl.org/id/ENSSSCG00000005182" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005182", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005182", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100514146", "url": "https://www.ncbi.nlm.nih.gov/gene/100514146", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038820", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038820", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514146", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514146", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A480DIL6", "url": "https://www.orthodb.org/?gene=A0A480DIL6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47899", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47899", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47899:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47899:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28256", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28256", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020919133", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919133", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480DIL6", "url": "https://www.uniprot.org/uniprotkb/A0A480DIL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480DIL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480DIL6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"MGDGLLAGGGLGSEAMAPERTRWSAEEHPAPLEKGLLQDDDSCSDCSSHDKPGSSLQSFVPEGKIHFPEMFQTSHLLFYERFRAYQDYILADCKASEVREFTAEFLEKVLEPSGWRAVWHTNVFEVLVEVTDVDFAALKAVVRLADPYLCESQVSTFTLECMKELLDLKEYRLPLQELWVVFDDSGIFDQTALAIEHVRFFYQNIWRSWDEEEEDEYDYFVRCVEPRLRLHYDILEDRVPSGLIVDYQNLLTQCEESYRKFLNLRSSLSNCNSDSEQENISMVEGLKLYSEIEQLKQKLKLIENPLLRYVFGYQKNSNIQAKGVRLNGEKITHVVSSTVTTGLLQSLLRDRLCPEPCKEEIEIQFHSDPLSAINACYEGDTVIVCPGHYVVHGTFSIADSIELEGYGLPDDIVIEKRGKGDTFVDCTGADVKISSIKFVQHDAVEGILIIHRGKTTLENCVLQCETTGVTVRTSAEFLMKNSDLYGAKGAGIEIYPGSKCTLCDNGIHHCKEGILIKDFLDEHYDIPKISMVNNVIHNNEGYGVVLVKPTIFSDLQENAQDGTEENKALKIQTSGEADVAERVDLEELIQCATGKMELYARADLSEQGEGNYEIVNELVAASTQKGQMKKKRLSELGITQADDNLMSQEMFVSIVGNQFKWNGKGSFGTFLF", "length": 672, "header": "tr|A0A480DWB6-1|A0A480DWB6_PIG Isoform 1 of SHC SH2 domain-binding protein 1 OS=Sus scrofa OX=9823 GN=SHCBP1 PE=4 SV=1 CANONICAL=A0A480DWB6-1" }, "isoforms": [ { "isoform_ac": "A0A480DWB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480DWB6/entry#A0A480DWB6-1", "sequence": { "sequence": 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"url": "https://www.ensembl.org/id/ENSSSCP00000026175.3" } ] } }, { "isoform_ac": "A0A5G2RKM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JH82/entry#A0A5G2RKM1-1", "sequence": { "sequence": "MGCDVRVSGLLRRNLQPTLTYWSVFFSFGLCIAFLGPTLLDLRCQTHSSLPQISWVFFSQQLCLLLGSALGGVFKRTLAQSLWALFTSSLAISLVFAAIPFCRDVKVLASVMALAGLAMGCIDTVANMQLVRIYQKDSAVFLQVLHFFVGFGALLSPLIADPFLSEANCLPTNSTDNSTSGSHLLHTSGVLGHHHAAAQPWSNQTLPGLPSQDGAGTRVSYAFWIMALINVGVVVTFLVLLVFSYNVVFLFVGTASLGLFLSSTFPSMLAYTEDILQYKGCATTVLVTGAGIGEMVLQMLVGSIFQAQGSYSFLVCGVIFGCLAFTFYILLLFFHRMHPGLSSAPPQDKPLGMESLERYQR", "length": 361, "header": "tr|A0A5G2RKM1-1|A0A480JH82_PIG Computationally mapped isoform of Major facilitator superfamily domain containing 4A OS=Sus scrofa OX=9823 GN=MFSD4A PE=4 SV=1 CANONICAL=A0A480JH82-1" }, "locus": { "chromosome": "9", "start_pos": 66288185, "end_pos": 66249732, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085525.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085525.1" 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"MMHVERLSKIAQLTKVIYALNTKNDEHESAIQALKDAHEEEIQQILAETREKILQYKSRVTEELDLKRKIQVLEASLEDHVKMKQAALAEFEAYKHRIEDMQLCAEAQHVQRIVTMSREVEEIRRKFEERLRSFGQLQVQFEKDKRLALEDLRTAHRREIQELLKSQQDHSASVNKGQEKAEELHRMEVEALNQTLEELRLERKKLIEDYEGKLHKAQSFYEHELDTLKRSQLFTAESLQASKEKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEAGSLRDKCQKLQLALVTAENNVQVLQKQLDDAKEGEMALLSRHKEVESELAAARERLQQQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSKANERLSQLEEERAFLQSKTQSLDEEQKQQILELEKKVNEAKKTQQEYYEMELKDLQNRLEGEMAQLNEAHSKTLEELAWKHHMAIEAVHSNVIRDKKKLQMELEEQYKKEKLNLEEDKNQLQQELENLKEEMEDKLNSANQEIGRLQDIVSKSEQGLGSAEGLIASLQDSQDRLQNELELTKGRLRETKDALLNVEGELEQERQQHEEILAAMKEEEKLRVDKMAHDLEIKWTENLRQECSKLREELRLQHEEDKKSAMSQLLQLKEREKNAAKDSWQKKVEDLLNQISLLKQNLEMQLSQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALENHLQQKHSAELQSLKDAHRESMEGFRIEMEQELQTLRFELEDEGKAMLASLRSELNHQHAAAIDLLRHNHHQELAAAKMELERSIDISRRQSKEHMCRITDLQDEVRHREHHISDLDKEVQHLHENISALTKELEFKGKEILRIRSESNQQMRLHEQDLNKRLEKELDVMTADHLREKNIMRADFNKTNELLKEINAALQVSLEEMEEKYLMRESKPEDIQMIAELKAMLTERDQVIKKLIEDNKFYQLELINRETNFNKVFNSSPTVGVINPLTKQKKKNDKSPTNRFVSVPNLSALESGGVGNGHPNRLDPIPNSPVHDIEFNSSKPLPQPVPPKEPKTFLRYQ", "length": 1078, "header": "tr|F1SF39-1|A0A480JNE4_PIG Computationally mapped isoform of Family with sequence similarity 184 member A OS=Sus scrofa OX=9823 GN=FAM184A PE=4 SV=5 CANONICAL=A0A480JNE4-1" }, "locus": { "chromosome": "1", "start_pos": 43112571, "end_pos": 43003455, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004692.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004692.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004584.5", "url": "https://www.ensembl.org/id/ENSSSCP00000004584.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1040, "start_aa": "Thr", "end_pos": 1040, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1040", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3, "start_aa": "Thr", "end_pos": 3, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXH6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PFG2-1", "protein_name": "Family with sequence similarity 184 member A", "gene_name": "FAM184A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MATPGMSWQQQHGYGGGSAPGAGKFSSGSAPSGLGAEHSPDLHFKMSKKIAQLTKVIYALNTKNDEHEAAIQALKDAHEEEIQQILAETREKILQYKSKVAEEMDLKRKIQVLEESLEDHKKMKHQALTEFEAYKDRVEDMQLCAEAQHVQRVVTMSREVEEIRKKFEERLRSFIQLQVQYEKDKRSALEDLRAAHRLEIQELLKTQQNQNATLSKGQEKLEELHRLELEDLNNKVEELRLERKKLIEDYEGKLSKAQSFYEHELDSLKRSQLFTAESLHACKEKEVELRKEFQNQESILRKNLGKLKTELQMVQDEAASLREKCQKLQVALSTAENNVQVLQKQLDDVKEEEMSLLSKHKEVESELAAARERLQQQATDLVLKASHIGMLQATQMTQEVTIRDLESEKSRLKEKLSQLEEERNLLQSKTQSLDERQRQQILALEKKVNEARETQREYYEKELVKLQARLEGEAAQLKEAHSKTLEELAWKHHTAIEAAHSNANKDKKKLQMELEQQFEKEKLHLEDDKNQLRQQLENLREELTTKLTSANQEVCRLQDLVRKSEQGLGTAEGHISSLQEAQEILQKELELTRARLRETTDSLYNVEGELDQERQQHEVMIAAMREEEKFKVDRMARDLEIKWTENLRQECNKLREELRLQHEEDKKAAMTQLLQLKEREKNAARDGWQKKVEDLLDQISLLKQNLEMQLSQSQSSLQQLQAQFSQERQRLTQEIQELEEEHQQRHKSLQEAHILAFQNMEETKEQEQKELEERLQQKHSEELQALKETHKQAMEGFKLEMEQELQTLRFELEDEGKAMLASLRSELNHQHAAAIDQLRHNHQQELLAAKMELERSIELGRRQEKEFLCRISDLQDELRHRDHHIAELDKEILHLHDNISALTKELEFKGKEVLRIRSESNQQIRMHEQDLSKKHEKELDVLTADHIREKQSMLADFNKTQELLKEINSALQVSLEEMEEKYKNRESRPEDLQLISELKDLIAERDQLIKKLIEDKKFYQLELVNRETNYNKVFNASPNVGVINPLVKQKKKNDKSTNRFVSVPNLSALESSGVGNGHPNRLDPIPNSPIHDIEFNSSKPLPQPIPPKEPKTFLSPPQTDASPVASPDPQRQEWLARYFTF", "length": 1141 }, "evidence": [ { "id": "A0A480JNE4", "url": "https://omabrowser.org/oma/group/A0A480JNE4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8I5ZS46-1", "protein_name": "Family with sequence similarity 184, member A", "gene_name": "Fam184a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATPGMSWQHHYYGGSSSGPAKFTTSPAAAQLAGHNMDYSQDMHLKMSKKIAQLTKVIYALNTKNDEHDSAIQALKDAHEEEIQQILAETREKILLYKSRVTEELDLKRKIQVLEASLEDHVKMKQEALKEFEAYKRRVEDMQLCAEAQHVQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENDKQSALEELRTTHRLEVQELLRSQEDHSASMNLGQEKAEELHRREVEALNNTLEELRLEKKELIEEYEGKLSKAQLFYERELDNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLVRKASHIGMLQATQMTQEVTIKDLESEKSRAHERLCQLEKERAFLQSRTQSLDEEQKQQELEMEKKVNEVKRTQQEYYEMELKNLQTRLEGEVAQLNETHGKTLEELAWKHHMAIEAVHSNASRDKIKLQTELEEQHKKEKLSLEEDKNQLQLELENLKQALGDKLTSANQEIDRLQDLVRKSEQGLGSAEGLIASLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDLEIKWTENLRQECSKLRQELKLQHEEDKKCAMSQLLQLKEREKTAARDSWQKKVEDLLNQRHSLGEALHKSINNISLLKQNLELQLCQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALETHLQQKHSAELQSLKDAHRESMEGFRVEMEQELQTLRFELEDEGKAMLASLRSELNHQHATSIDLLRHSHHQELAAAKMELERSIDISRRQSKEHMCRISDLQDELRHREHHITDLDKEVQHLHESISTLTKELELKGKEILRIRSESNQQMRLHEQDLNKRLEKELDVMTADHLREKNIMRADFNKTNELLKEINAALQVSLEDMEEKYLMRESRPEDLQMIAELKSLLTERDQVIKKLIQKKKNDKSPANRFVSVPNLSALESGGMGNGHPTRLEPIPNSPAHDVEFNSNKPLPQPLPPKEPKTFLSPPQSEASPVASPDPQRQEWFARYFTF", "length": 1122 }, "evidence": [ { "id": "A0A480JNE4", "url": "https://omabrowser.org/oma/group/A0A480JNE4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BA11-1", "protein_name": "Family with sequence similarity 184 member A", "gene_name": "FAM184A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATPGMSWQQHYYGGSAAKFVPSPAAGQQAGHCMDYSQDMHLKMSKKIAQLTKVIYALNTKNDEHESAIQALKDAHEEEIQQILAETREKILQYKSRVTEELDLRRKIQVLEASLEDHIKMKQQALTEFEAYKHRVEDMQLCAEAQHVQRIVTMSREVEEIRRKFEERLRSFGQLQVQFEKDKRLALEDLRTAHRREIQELLKCQQDHSASVNKGQEKAEELHRMEVEALNKTLEELRLERKKLVEDYEGKLHKAQSFYEHELDTLKRSQLFTAESLQASKEKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEAGSLRDKCQKLQIALVTAENNVQVLQKQLDDAKEGEMALLSRHKEVESELAAARERLQQQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLSQLEEERAFLQSKTQSLDEEQKQQILELEKKVNEAKKTQQEYYEMELKNLQSRLEGEVAQLNEAHSKTLEELAWKHHMAIEAVHSNAIRDKKKLQMELEEQYKKEKLNLEEDKNQLQQELENLKEELENKLHSANQEIGRLQEMVSKSEQGLGSAEGLIASLQDSQERLQNELDLTKGRLKETKDALLNVESKLEQERRQHEETLAAMKEEEKLQVDRMAHDLEMKWTENLRQECSKLREELRLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQISLLKQNLEMQLSQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALESHLQQKHSAELQSLKDAHRESMEGFRIEMEQELQTLRFELEDEGKAMLASLRSELNQQHAAAIDLLRHNHHQELAAAKMELERSIDISRRQSKEHMCRITDLQDEVRHREHHISDLDKEVQHLHENINALTKELEFKGKEILRIRSESNQQMRLHEQDLNKRLEKELDVMTADHLREKNIMRADFNKTNELLKEVNAALQVSLEEMEEKYLMRESKPEDIQMIAELKAMLTERDQVIKKLMEDNKFYQLELVNRETNFNKVFNSSPTVGVINPLMKQKKKNDKSPTNRFVSVPNLSALESGGVGNGHPNRLDPIPNSPVHDIEFNSSKPLPQPVPPKEPKTFLRYH", "length": 1116 }, "evidence": [ { "id": "A0A480JNE4", "url": "https://omabrowser.org/oma/group/A0A480JNE4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E9PW83-1", "protein_name": "Family with sequence similarity 184, member A", "gene_name": "Fam184a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATPGMSWQHHYYGSSTSGPAKFATSPAAAQLAGHNMDYSQDMHLKMSKKIAQLTKVIYALNTRNDEHDAAIQALKDAHEEEIQQILAETREKILLYKSKVTEELDLRRKIQVLEASLEDHMKMKQEALTEFEAYKRRVEDMQLCAEAQHVQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENDKQAALEDLRTTHRLEVQELLKSQQNHSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEGKLSKAQVFYERELDNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVHSNASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDLEIKWTENLRQECSKLRQELRLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQISLLKQNLELQLCQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALETHLQQKHSAELQSLKDAHRESMEGFRVEMEQELQTLRFELEDEGKAMLASLRSELNHQHAASIDLLRHSHHQELAAAKMELERSIDISRRQSKEHMCRISDLQEELRHREHHITDLDKEVQHLHENINTLTKELELKGKEILRVRSESNQQMRLHEQDLNKRLEKELDVMTADHLREKNIMRADFNKTNELLKEINAALQVSLEDMEEKYLMRESRPEDIQMIAELKSLITERDQVIKKLIEDNKFYQLELVNRETNFNKIFNTSPTVGVINPLAKQKKKNDKSAANRFVSVPNLSALESSGMGNGHPTRLEPIPNSPAHDVEFNSNKPLPQPLPPKEPKTFLSPPQSEASPVASPDPQRQEWFARYFTF", "length": 1143 }, "evidence": [ { "id": "A0A480JNE4", "url": "https://omabrowser.org/oma/group/A0A480JNE4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5SPS1-1", "protein_name": "Protein FAM184A isoform X1", "gene_name": "fam184ab", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MATGAGWQHYYNPAGSASTGKYNSTSTSTSTSTSFPSGLTLEYTQDLHLKMSKKIAQLTKVIYALNTKNDEHEAAIQTLKEAHEEEVQQILSETREKIMQYKSKISDEMDLKRRIQSLEESMELHERMKRQALDEFETYRQRVEDMQLCTEAQHTQRVVSMSREVEEMRRSFEEKLRSFAQLQSQFEQEKRQALEELRSGHRQEVQELLRSHQSQNANYSKDQEKLGQLHKAEVDSLNERVEELKQDKKRLVEEYEAKLNKAQAFYERELEAMKRTQQMTAENLLAWKKTEAELRKEFQAQEAALQKTLGKLRSELQRVQDEARESREKSHKLQASLMTAENNIKELHKQLEEVTKDAEIVEIRQREGECELEASRDRVQQQATEILLKASQIGSLQATQMTHEAVIRDLESEKSRLKDKVLRLEEERGALQNKCQTLDDRQRQQIVTLEKSLREEKQIYEKELMNLRAKYEDDTAHFKESHSRALEELSRKHRASLENIQSLSEKEKNRLLSDMEDQFNKERTSLEEQKRILREELDSLREELTAKLNMANNEVSRLQELVKQGEQTLGSSEGHISNLKDAQKKLLEELDATRARLRETSNLLTALQGEMETQKQQHDAKLISIKEEEKLKMDKMALELELKWTETLRQECKKLREELREDHEEDKRSALTQLAQNKDQELCSARESWQRKVEDLLEQISLLKQSLEMQLSQSQHSLQQLQAQFSQEREHLGQQLEEMEMEHQHRQQRLQEAHCCAIQDMQEARKHDLKALEERLRQQHHMELQTLREAHRQNIETLKQQSEQELQTLRFELEDEGKAMLASLRSELNHLHASAIEHMRQTHQQETAAAKQELENALEQSRVQERELLSRISDLQEEVSRRKKHIADLDHEIHTLNENISTLTKELELKGKEVLKIRSEANQQIRAHEQDLCKKHEREMAELNALHHRETQNMLSDFNKAQELLKDKISALQILLEGTEDKFRNRESRPEDLQTIAELKDMVAEREALVKKLVDDKKFYQLELVNRETSFNKIFNANPNVGVINPLVKQKRKNDKSATRFSSSANLRANVEASGTGSGQPQPNRLEPLPNSPIHQLEPNASKPLSLPTPLTEPKKVTSPPEGEESALTSPDPQRQEWFAQYFSF", "length": 1145 }, "evidence": [ { "id": "A0A480JNE4", "url": "https://omabrowser.org/oma/group/A0A480JNE4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8NB25-1", "protein_name": "Protein FAM184A", "gene_name": "FAM184A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPGMSWQQHYYGGSAAKFAPSPATAQLAGHSMDYSQEMHLKMSKKIAQLTKVIYALNTKNDEHESAIQALKDAHEEEIQQILAETREKILQYKSKVTEELDLRRKIQVLESSLEDHIKMKQQALTEFEAYKHRVEDMQLCAEAQHVQRIVTMSREVEEIRRKFEEKLRSFGQLQVQFEKDKRLALEDLQAAHRREIQELLKSQQDHSASVNKGQEKAEELHRMEVESLNKMLEELRLERKKLIEDYEGKLNKAQSFYERELDTLKRSQLFTAESLQASKEKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEAGSLLDKCQKLQTALAIAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQQQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRVNERLSQLEEERAFLRSKTQSLDEEQKQQILELEKKVNEAKRTQQEYYERELKNLQSRLEEEVTQLNEAHSKTLEELAWKHHMAIEAVHSNAIRDKKKLQMDLEEQHNKDKLNLEEDKNQLQQELENLKEVLEDKLNTANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKDSLKETKDALLNVEGELEQERQQHEETIAAMKEEEKLKVDKMAHDLEIKWTENLRQECSKLREELRLQHEEDKKSAMSQLLQLKDREKNAARDSWQKKVEDLLNQISLLKQNLEIQLSQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALENHLQQKHSAELQSLKDAHRESMEGFRIEMEQELQTLRFELEDEGKAMLASLRSELNHQHAAAIDLLRHNHHQELAAAKMELERSIDISRRQSKEHICRITDLQEELRHREHHISELDKEVQHLHENISALTKELEFKGKEILRIRSESNQQIRLHEQDLNKRLEKELDVMTADHLREKNIMRADFNKTNELLKEINAALQVSLEEMEEKYLMRESKPEDIQMITELKAMLTERDQIIKKLIEDNKFYQLELVNRETNFNKVFNSSPTVGVINPLAKQKKKNDKSPTNRFVSVPNLSALESGGVGNGHPNRLDPIPNSPVHDIEFNSSKPLPQPVPPKGPKTFLSPAQSEASPVASPDPQRQEWFARYFTF", "length": 1140 }, "evidence": [ { "id": "A0A480JNE4", "url": "https://omabrowser.org/oma/group/A0A480JNE4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "P-body", "id": "GO:0000932", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000932", "evidence": [ { "database": "UniProtKB", "id": "A0A480JNE4", "url": "https://www.uniprot.org/uniprotkb/A0A480JNE4" } ], "pmid": "" }, { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "A0A480JNE4", "url": "https://www.uniprot.org/uniprotkb/A0A480JNE4" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "A0A480JNE4", "url": "https://www.uniprot.org/uniprotkb/A0A480JNE4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1036, "end_pos": 1038, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1067, "end_pos": 1069, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1098, "end_pos": 1100, "annotation": "n_glycosylation_sequon" }, { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" }, { "start_pos": 899, "end_pos": 901, "annotation": "n_glycosylation_sequon" }, { "start_pos": 959, "end_pos": 961, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480JNE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JNE4" }, { "id": "PF15665", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15665" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein FAM184A/B N-terminal", "eco_id": "ECO_0000259", "start_pos": 57, "end_pos": 267, "start_aa": "Val", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 3, 1040 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1036, "end_pos": 1038 }, { "start_pos": 1067, "end_pos": 1069 }, { "start_pos": 1098, "end_pos": 1100 }, { "start_pos": 234, "end_pos": 236 }, { "start_pos": 899, "end_pos": 901 }, { "start_pos": 959, "end_pos": 961 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480JQY8-1", "uniprot_ac": "A0A480JQY8", "uniprot_id": "A0A480JQY8_PIG", "mass": { "chemical_mass": 75978.0, "monoisotopic_mass": 75978.0 }, "refseq": { "ac": "XP_020948581", "name": "dymeclin isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948581" }, "gene_names": [ { "name": "DYM", "type": "recommended", "evidence": [ { "id": "A0A480JQY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8" } ] }, { "name": "DYM", "type": "synonym", "evidence": [ { "id": "XP_020948581", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948581" } ] } ], "protein_names": [ { "name": "Dymeclin", "type": "recommended", "evidence": [ { "id": "A0A480JQY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8/entry#names_and_taxonomy" } ] }, { "name": "dymeclin isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020948581", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948581" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480JQY8", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DYM", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8", "locus": { "chromosome": "1", "start_pos": 98638339, "end_pos": 99024642, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004508", "url": "https://www.ensembl.org/id/ENSSSCG00000004508" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004508", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004508", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100738627", "url": "https://www.ncbi.nlm.nih.gov/gene/100738627", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019142", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019142", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100738627", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738627", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VWTLVCK", "url": "https://omabrowser.org/oma/group/VWTLVCK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QRC1", "url": "https://www.orthodb.org/?gene=A0A5G2QRC1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12895", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12895", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12895:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12895:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09742", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09742", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020948581", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948581", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480JQY8", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480JQY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRC1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R050", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R050", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R050-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R050-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R786", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R786", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R786-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R786-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAE4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAE4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0NR84", "url": "https://www.uniprot.org/uniprotkb/A0A8D0NR84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0NR84-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0NR84-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0XMD1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0XMD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0XMD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0XMD1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LFB3", "url": "https://www.uniprot.org/uniprotkb/I3LFB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LFB3-1", "url": "https://www.uniprot.org/uniprotkb/I3LFB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LV52", "url": "https://www.uniprot.org/uniprotkb/I3LV52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LV52-1", "url": "https://www.uniprot.org/uniprotkb/I3LV52-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSNSSRIGDLPKNEYLKKLSGTESVSENDPFWNQLLSFSFPAPTSSTELKLLEEATISVCRSLVENNPRTGNLGALIKVFLSRTKELKLSAECQNHIFIWQTHNALFIICCLLKVFICEMSEEELQLHFTYEEKSPGSYSSDSEDLLEELLCCLMQLITDIPLLDITYEISVEAVSTMVVFLSCQLFHKEVLRQSISHKYLMRGRCLPYTSKLVKTLLYNFIRQEKPPPPGAHVLPQQSDSGGLLYGLASGVATGLWTVFTLGGVGSKAAAAPELSSPLANQSLLLLLVLANLTDAADAPNPYRQAIMSFKNTQDSSPFPSSNPHAFQINFNSLYMALCEQQTSDQATLLLYTLLHQNSNIRTYMLARTDMENLVLPILEILYHVEERNSHHVYMALIILLILTEDDGFNRSIHEVILKNITWYSERVLTEISLGSLLILVVIRTIQYNMTRTRDKYLHTNCLAALANMSAQFRSLHQYAAQRIISLFSLLSKKHNKVLEQATQSLRGSLSSNDVPLPDYAQDLNVIEEVIRMMLEIINSCLTNSLHHNPNLVYALLYKRDLFEQFRTHPSFQDIMQNIDLVITFFSSRLLQAGAELSVERVLEIIKQGVVALPKDRLKKFPELKFKYVEEEQPEEFFIPYVWSLVYNTAVGLYWNPQDIQLFTMDSD", "length": 669, "header": "tr|A0A480JQY8-1|A0A480JQY8_PIG Isoform 1 of Dymeclin OS=Sus scrofa OX=9823 GN=DYM PE=3 SV=1 CANONICAL=A0A480JQY8-1" }, "isoforms": [ { "isoform_ac": "A0A480JQY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8/entry#A0A480JQY8-1", "sequence": { "sequence": "MGSNSSRIGDLPKNEYLKKLSGTESVSENDPFWNQLLSFSFPAPTSSTELKLLEEATISVCRSLVENNPRTGNLGALIKVFLSRTKELKLSAECQNHIFIWQTHNALFIICCLLKVFICEMSEEELQLHFTYEEKSPGSYSSDSEDLLEELLCCLMQLITDIPLLDITYEISVEAVSTMVVFLSCQLFHKEVLRQSISHKYLMRGRCLPYTSKLVKTLLYNFIRQEKPPPPGAHVLPQQSDSGGLLYGLASGVATGLWTVFTLGGVGSKAAAAPELSSPLANQSLLLLLVLANLTDAADAPNPYRQAIMSFKNTQDSSPFPSSNPHAFQINFNSLYMALCEQQTSDQATLLLYTLLHQNSNIRTYMLARTDMENLVLPILEILYHVEERNSHHVYMALIILLILTEDDGFNRSIHEVILKNITWYSERVLTEISLGSLLILVVIRTIQYNMTRTRDKYLHTNCLAALANMSAQFRSLHQYAAQRIISLFSLLSKKHNKVLEQATQSLRGSLSSNDVPLPDYAQDLNVIEEVIRMMLEIINSCLTNSLHHNPNLVYALLYKRDLFEQFRTHPSFQDIMQNIDLVITFFSSRLLQAGAELSVERVLEIIKQGVVALPKDRLKKFPELKFKYVEEEQPEEFFIPYVWSLVYNTAVGLYWNPQDIQLFTMDSD", "length": 669, "header": "tr|A0A480JQY8-1|A0A480JQY8_PIG Isoform 1 of Dymeclin OS=Sus scrofa OX=9823 GN=DYM PE=3 SV=1 CANONICAL=A0A480JQY8-1" }, "locus": { "chromosome": "1", "start_pos": 99001036, "end_pos": 98643150, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089300.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089300.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062235.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062235.1" } ] } }, { "isoform_ac": "A0A5G2QRC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8/entry#A0A5G2QRC1-1", "sequence": { "sequence": "MGSNSSRIGDLPKNEYLKKLSGTESVSENDPFWNQLLSFSFPAPTSSTELKLLEEATISVCRSLVENNPRTGNLGALIKVFLSRTKELKLSAECQNHIFIWQTHNALFIICCLLKVFICEMSEEELQLHFTYEEKSPGSYSSDSEDLLEELLCCLMQLITDIPLLDITYEISVEAVSTMVVFLSCQLFHKEVLRQSISHKYLMRGRCLPYTSKLVKTLLYNFIRQEKPPPPGAHVLPQQSDSGGLLYGLASGVATGLWTVFTLGGVGSKAAAAPELSSPLANQSLLLLLVLANLTDAADAPNPYRQAIMSFKNTQDSSPFPSSNPHAFQINFNSLYMALCEQQTSDQATLLLYTLLHQNSNIRTYMLARTDMENLVLPILEILYHVEERNSHHVYMALIILLILTEDDGFNRSIHEVILKNITWYSERVLTEISLGSLLILVVIRTIQYNMTRTRDKYLHTNCLAALANMSAQFRSLHQYAAQRIISYTCRHLRRYVYVLDKLYFPHSHCSTLQHCFSTLSDNGEELLSLTCSHILRSYASSLFSLLSKKHNKVLEQATQSLRGSLSSNDVPLPDYAQDLNVIEEVIRMMLEIINSCLTNSLHHNPNLVYALLYKRDLFEQFRTHPSFQDIMQNIDLVITFFSSRLLQAGAELSVERVLEIIKQGVVALPKDRLKKFPELKFKYVEEEQPEEFFIPYVWSLVYNTAVGLYWNPQDIQLFTMDSD", "length": 724, "header": "tr|A0A5G2QRC1-1|A0A480JQY8_PIG Computationally mapped isoform of Dymeclin OS=Sus scrofa OX=9823 GN=DYM PE=3 SV=1 CANONICAL=A0A480JQY8-1" }, "locus": { "chromosome": "1", "start_pos": 99001036, "end_pos": 98643150, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084035.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084035.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067304.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067304.1" } ] } }, { "isoform_ac": "A0A5G2R050-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8/entry#A0A5G2R050-1", "sequence": { "sequence": "MGSNSSRIGDLPKNEYLKKLSGTESVSENDPFWNQLLSFSFPAPTSSTELKLLEEATISVCRSLAGLWTVFTLGGVGSKAAAAPELSSPLANQSLLLLLVLANLTDAADAPNPYRQAIMSFKNTQDSSPFPSSNPHAFQINFNSLYMALCEQQTSDQATLLLYTLLHQNSNIRTYMLARTDMENLVLPILEILYHVEERNSHHVYMALIILLILTEDDGFNRSIHEVILKNITWYSERVLTEISLGSLLILVVIRTIQYNMTRTRDKYLHTNCLAALANMSAQFRSLHQYAAQRIISLFSLLSKKHNKVLEQATQSLRGSLSSNDVPLPDYAQDLNVIEEVIRMMLEIINSCLTNSLHHNPNLVYALLYKRDLFEQFRTHPSFQDIMQNIDLVITFFSSRLLQAGAELSVERVLEIIKQGVVALPKDRLKKFPELKFKYVEEEQPEEFFIPYVWSLVYNTAVGLYWNPQDIQLFTMDSD", "length": 479, "header": "tr|A0A5G2R050-1|A0A480JQY8_PIG Computationally mapped isoform of Dymeclin OS=Sus scrofa OX=9823 GN=DYM PE=3 SV=1 CANONICAL=A0A480JQY8-1" }, "locus": { "chromosome": "1", "start_pos": 99001036, "end_pos": 98643150, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068297.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068297.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069765.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069765.1" } ] } }, { "isoform_ac": "A0A5G2R786-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8/entry#A0A5G2R786-1", "sequence": { "sequence": "MGSNSSRIGDLPKNEYLKKLSGTESVSENDPFWNQLLSFSFPAPTSSTELKLLEEATISVCRSLVENNPRTGNLGALIKVFLSRTKELKLSAECQNHIFIWQTHNALFIICCLLKVFICEMSEEELQLHFTYEEKSPGSYSSDSEDLLEELLCCLMQLITDIPLLDITYEISVEAVSTMVVFLSCQLFHKEVLRQSISHKYLMRGRCLPYTSKLVKTLLYNFIRQEKPPPPGAHVLPQQSDSGGLLYGLASGVATGLWTVFTLGGVGSKAAAAPELSSPLANQSLLLLLVLANLTDAADAPNPYRQAIMSFKNTQDSSPFPSSNPHAFQINFNSLYMALCEQQTSDQATLLLYTLLHQNSNIRTYMLARTDMENLVLPILEILYHVEERNSHHVYMALIILLILTEDDGFNRSIHEVILKNITWYSERVLTEISLGSLLILVVIRTIQYNMTRTRDKYLHTNCLAALANMSAQFRSLHQYAAQRIISLFSLLSKKHNKVLEQATQSLRGSLSSNDVPLPDYAQDLNVIEEVIRMMLEIINSCLTNSLHHNPNLVYALLYKRDLFEQFRTHPSFQDIMQNIDLVITFFSSRLLQAGAELSVERVLEIIKQGVVALPKDRLKKRLSEYGLRYRSDTQKCNEGF", "length": 641, "header": "tr|A0A5G2R786-1|A0A480JQY8_PIG Computationally mapped isoform of Dymeclin OS=Sus scrofa OX=9823 GN=DYM PE=3 SV=1 CANONICAL=A0A480JQY8-1" }, "locus": { "chromosome": "1", "start_pos": 99001036, "end_pos": 98708653, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077417.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077417.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069992.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069992.1" } ] } }, { "isoform_ac": "A0A5G2RAE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8/entry#A0A5G2RAE4-1", "sequence": { "sequence": "MGSNSSRIGDLPKNEYLKKLSGTESVSENDPFWNQLLSFSFPAPTSSTELKLLEEATISVCRSLVENNPRTGNLGALIKVFLSRTKELKLSAECQNHIFIWQTHNALFIICCLLKVFICEMSEEELQLHFTYEEKSPGSYSSDSEDLLEELLCCLMQLITDIPLLDITYEISVEAVSTMVVFLSCQLFHKEVLRQSISHKYLMRGRCLPYTSKLVKTLLYNFIRQEKPPPPGAHVLPQQSDSGGLLYGLASGVASLKGILASFMQIIGE", "length": 269, "header": "tr|A0A5G2RAE4-1|A0A480JQY8_PIG Computationally mapped isoform of Dymeclin OS=Sus scrofa OX=9823 GN=DYM PE=3 SV=2 CANONICAL=A0A480JQY8-1" }, "locus": { "chromosome": "1", "start_pos": 99001036, "end_pos": 98917722, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071364.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071364.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074294.2", "url": "https://www.ensembl.org/id/ENSSSCP00000074294.2" } ] } }, { "isoform_ac": "A0A8D0NR84-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8/entry#A0A8D0NR84-1", "sequence": { "sequence": "MGSNSSRIGDLPKNEYLKKLSGTESVSENDPFWNQLLSFSFPAPTSSTELKLLEEATISVCRSLVENNPRTGNLGALIKVFLSRTKELKLSAECQNHIFIWQTHNALFIICCLLKVFICEMSEEELQLHFTYEEKSPGSYSSDSEDLLEELLCCLMQLITDIPLLDITYEISVEAVSTMVVFLSCQLFHKEVLRQSISHKYLMRGRCLPYTSKLVKTLLYNFIRQEKPPPPGAHVLPQQSDSGGLLYGLASGVANSSPFPSSNPHAFQINFNSLYMALCEQQTSDQATLLLYTLLHQNSNIRTYMLARTDMENLVLPILEILYHVEERNSHHVYMALIILLILTEDDGFNRSIHEVILKNITWYSERVLTEISLGSLLILVVIRTIQYNMTRTRDKYLHTNCLAALANMSAQFRSLHQYAAQRIISLFSLLSKKHNKVLEQATQSLRGSLSSNDVPLPDYAQDLNVIEEVIRMMLEIINSCLTNSLHHNPNLVYALLYKRDLFEQFRTHPSFQDIMQNIDLVITFFSSRLLQAGAELSVERVLEIIKQGVVALPKDRLKKFPELKFKYVEEEQPEEFFIPYVWSLVYNTAVGLYWNPQDIQLFTMDSD", "length": 608, "header": "tr|A0A8D0NR84-1|A0A480JQY8_PIG Computationally mapped isoform of Dymeclin OS=Sus scrofa OX=9823 GN=DYM PE=3 SV=1 CANONICAL=A0A480JQY8-1" }, "locus": { "chromosome": "1", "start_pos": 99001036, "end_pos": 98643150, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073850.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073850.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066123.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066123.1" } ] } }, { "isoform_ac": "A0A8D0XMD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8/entry#A0A8D0XMD1-1", "sequence": { "sequence": "MGSNSSRIGDLPKNEYLKKLSGTESVSENDPFWNQLLSFSFPAPTSSTELKLLEEATISVCRSLVENNPRTGNLGALIKVFLSRTKELKLSAECQNHIFIWQTHNALFIICCLLKVFICEMSEEELQLHFTYEEKSPGSYSSDSEDLLEELLCCLMQLITDIPLLDITYEISVEAVSTMVVFLSCQLFHKEVLRQSISHKYLMRGRCLPYTSKLVKTLLYNFIRQEKPPPPGAHVLPQQSDSGGLLYGLASGVATGLWTVFTLGGVGSKAAAAPELSSPLANQSLLLLLVLANLTDAADAPNPYRQAIMSFKNTQDSSPFPSSNPHAFQINFNSLYMALCEQQTSDQATLLLYTLLHQNSNIRTYMLARTDMENLILKNITWYSERVLTEISLGSLLILVVIRTIQYNMTRTRDKYLHTNCLAALANMSAQFRSLHQYAAQRIISLFSLLSKKHNKVLEQATQSLRGSLSSNDVPLPDYAQDLNVIEEVIRMMLEIINSCLTNSLHHNPNLVYALLYKRDLFEQFRTHPSFQDIMQNIDLVITFFSSRLLQAGAELSVERVLEIIKQGVVALPKDRLKKFPELKFKYVEEEQPEEFFIPYVWSLVYNTAVGLYWNPQDIQLFTMDSD", "length": 627, "header": "tr|A0A8D0XMD1-1|A0A480JQY8_PIG Computationally mapped isoform of Dymeclin OS=Sus scrofa OX=9823 GN=DYM PE=3 SV=1 CANONICAL=A0A480JQY8-1" }, "locus": { "chromosome": "1", "start_pos": 99001036, "end_pos": 98643150, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044909.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044909.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036924.2", "url": "https://www.ensembl.org/id/ENSSSCP00000036924.2" } ] } }, { "isoform_ac": "I3LFB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8/entry#I3LFB3-1", "sequence": { "sequence": "MGSNSSRIGDLPKNEYLKKLSGTESVSENDPFWNQLLSFSFPAPTSSTELKLLEEATISVCRSLVENNPRTGNLGALIKVFLSRTKELKLSAECQNHIFIWQTHNALFIICCLLKVFICEMSEEELQLHFTYEEKSPGSYSSDSEDLLEELLCCLMQLITDIPLLDITYEISVEAVSTMVVFLSCQLFHKEVLRQSISHKYLMRGRCLPYTSKLVKTLLYNFIRQEKPPPPGAHVLPQQSDSGGLLYGLASGVATGLWTVFTLGGVGSKAAAAPELSSPLANQSLLLLLVLANLTDAADAPNPYRQAIMSFKNTQDSSPFPSSNPHAFQINFNSLYMALCEQQTSDQATLLLYTLLHQNSNIRTYMLARTDMENLVLPILEILYHVEERNSHHVYMALIILLILTEDDGFNRSIHEVILKNITWYSERVLTEISLGSLLILVVIRTIQYNMTRTRDKYLHTNCLAALANMSAQFRSLHQYAAQRIISLFSLLSKKHNKVLEQATQSLRGSLSSNDVPLPDYAQDLNVIEEVIRMMLEIINSCLTNSLHHNPNLVYALLYKRDLFEQFRTHPSFQDIMQNIDLVITFFSSRLLQAGAELSVERVLEIIKQGVVALPKDRLKAGPGDSPTQRHQEVKERMHLVVLKP", "length": 645, "header": "tr|I3LFB3-1|A0A480JQY8_PIG Computationally mapped isoform of Dymeclin OS=Sus scrofa OX=9823 GN=DYM PE=3 SV=2 CANONICAL=A0A480JQY8-1" }, "locus": { "chromosome": "1", "start_pos": 99001036, "end_pos": 98676880, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024612.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024612.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022753.2", "url": "https://www.ensembl.org/id/ENSSSCP00000022753.2" } ] } }, { "isoform_ac": "I3LV52-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8/entry#I3LV52-1", "sequence": { "sequence": "MGSNSSRIGDLPKNEYLKKLSGTESVSENDPFWNQLLSFSFPAPTSSTELKLLEEATISVCRSLVENNPRTGNLGALIKVFLSRTKELKLSAECQNHIFIWQTHNALFIICCLLKVFICEMSEEELQLHFTYEEKSPGSYSSDSEDLLEELLCCLMQLITDIPLLDITYEISVEAVSTMVVFLSCQLFHKEVLRQSISHKYLMRGRCLPYTSKLVKTLLYNFIRQEKPPPPGAHVLPQQSDSGGLLYGLASGVATGLWTVFTLGGVGSKAAAAPELSSPLANQSLLLLLVLANLTDAADAPNPYRQAIMSFKNTQDSSPFPSSNPHAFQINFNSLYMALCEQQTSDQATLLLYTLLHQNSNIRTYMLARTDMENLVLPILEILYHVEERNSHHVYMALIILLILTEDDGFNRSIHEVILKNITWYSERVLTEISLGSLLILVVIRTIQYNMTRTRDKYLHTNCLAALANMSAQFRSLHQYAAQRIISLFSLLSKKHNKVLEQATQSLRGSLSSNDVPLPDYVITFFSSRLLQAGAELSVERVLEIIKQGVVALPKDRLKKFPELKFKYVEEEQPEEFFIPYVWSLVYNTAVGLYWNPQDIQLFTMDSD", "length": 608, "header": "tr|I3LV52-1|A0A480JQY8_PIG Computationally mapped isoform of Dymeclin OS=Sus scrofa OX=9823 GN=DYM PE=3 SV=2 CANONICAL=A0A480JQY8-1" }, "locus": { "chromosome": "1", "start_pos": 99001036, "end_pos": 98643150, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022523.3", "url": "https://www.ensembl.org/id/ENSSSCT00000022523.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028004.2", "url": "https://www.ensembl.org/id/ENSSSCP00000028004.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRC1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738627", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738627", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9SU98-1", "protein_name": "Dymeclin", "gene_name": "DYM", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSNSSRIGDLPKNEYLKKLSGTESVSENDPFWNQLLSFSFPAPTSSTELKLLEEATISVCRSLVENNPRTGNLGALIKVFLSRTKELKLSAECQNHIFIWQTHNALFIICCLLKVFICEMSEEELQLHFTYEEKSPGSYSSDSEDLLEELLCCLMQLITDIPLLDITYEISVEAVSTMVVFLSCQLFHKEVLRQSISHKYLMRGRCLPYTSKLVKTLLYNFIRQEKPPPPGTHVLPQQSDGGGLLYGLASGVATGLWTVFTLGGVGSKVAAASELSSPLANQSLLLLLVLANLTDAADAPNPYRQAIMSFKNTQDSSPFPSSIPHAFQINFNSLYMALCEQQTSDQATLLLYTLLHQNSNIRTYMLARTDMENLVLPILEILYHVEERNSHHVYMALIILLILTEDDGFNRSIHEVMLKNITWYSERVLTEISLGSLLILVVIRTIQYNMTRTRDKYLHTNCLAALANMSAQFRSLHQYAAQRIVSLFSLLSKKHNKVLEQATQSLRGSLSSSDVPLPDYAQDLNVIEEVIRMMLEIINSCLTNSLHHNPNLVYALLYKRDLFEQFRTHPSFQDIMQNIDLVITFFSSRLLQAGAELSVERVLEIIKQGVVALPKDRLKMQVFHGKEDHCAATYKTPGSMTKTFCHLHEPCPHT", "length": 655 }, "evidence": [ { "id": "A0A480JQY8", "url": "https://omabrowser.org/oma/group/A0A480JQY8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5ZLW3-1", "protein_name": "Dymeclin", "gene_name": "DYM", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGANSSSISELPDNEYLKKLSGAEPISENDPFWNQLLSFSFTTPTNSADLKLLEEATVSVCKSLVEKNPRTGNLGSLIKVFLSRTKELKISAECQNHLFIWQAHNALFIICCLLKVFISRMSEEELQLHFTYEDKTPGSYGTECEDLIEELLCCLIQLIVEIPLLDITYSISLEAVTTLIVFLSCQLFHKEILRESLIHKYLMRGRCLPYTSRLVKTLLYNFIRQERSPPPGSHVFQQQTDGGGLLYGIASGVATGLWTVFTLGGVGSKATPQLDQCSPLANQSLLLLLVLANLTDAPDTPNPYRQAIMSFKNTQDSSAFSSSHPHVFQINFNSLYTALCEQQKSDQATLLLYMLLHQNGNVRTYVLARTDIENLVLPILEILYHVEERNSHHVYMALIILLILTEDDGFNRSIHEVILKNITWYAERVLTEISLGSLLILVVIRTIQYNMTRTRDKYLHTNCLAALANMSAQFRSLHQYAAQRIISLFSLLSKKHNKVLEQATQSLRGSLDSNDSPLPDYAQDLNVIEEVIRMMLEIINSCLTNSLHHNPNLVYALLYKRDLFEQFRTHPSFQDIMQNIDLVISFFSSRLEHAGAELSVERVLEIIKQGAVALPKDRLRKFPELKFKYVEEEQPEEFFIPYVWSLVYNAAVALYWNPRDIQLFTMDSG", "length": 669 }, "evidence": [ { "id": "A0A480JQY8", "url": "https://omabrowser.org/oma/group/A0A480JQY8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q7KNA0-1", "protein_name": "Dymeclin", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGINVSRTADLGSNQWLQRFVGRQHIAHDDEAFWNGLLNYNIVLPENSQDQLNLDSRLEALCQSFIGNNLKTGNFGSLVTVFLEKTSELLSLSDQESNMHVWQTFNALFIIRSLVKYINETGSEFQLLQHFEAMPNAELLQAALEQQQQTPAESATIAMEATEQSAAAAVPVIVDGSKFETFIDALVNLIVVIPVKEFTYHLHLEAVNMLITLLSVHLFAQQPTDKSIVFRTVFKCQHANVLMSALLHFVARIVEVPHTMFGSSSAGSFVFGIAESLLSIFTFRKQPDILKAGQAAGGGELSQRFRTHYPLANQSLLLILILTNHCTAQDNAYRTSLFSCADSKDSPKQGAVSFQIDFSAVYETLCTIVTIDQATLLLYLLLHRNERFYRFVMQQQDLEQLVIPILQTLYNAPDSNSHHIYMSLIVLLILSEDEGFNKNVHTIMLKNITWYTERTISEISLGGILILIVIRTIQYNMLKMRDKYLHTNCLAALANMSGHFRALHPYVAQRLVSLFETLARKHTRLDAQLKEPADSAVFVNVSTTPEDMLQDLSVLEEVLRMVLEILNSCLTNQLVYCPNLVYTLLYKRSVFEGFRSHHAFQDVIQNIDMVVGFFSSRLQRVQEQRGELGVNEVLEVISKGASQWSSDRLRKFPDLKFKYVEEDAPEEFFIPYVWTLVCKYGCVHFSSESIKSVTTDIAC", "length": 699 }, "evidence": [ { "id": "A0A480JQY8", "url": "https://omabrowser.org/oma/group/A0A480JQY8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7RTS9-1", "protein_name": "Dymeclin", "gene_name": "DYM", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGSNSSRIGDLPKNEYLKKLSGTESISENDPFWNQLLSFSFPAPTSSSELKLLEEATISVCRSLVENNPRTGNLGALIKVFLSRTKELKLSAECQNHIFIWQTHNALFIICCLLKVFICQMSEEELQLHFTYEEKSPGNYSSDSEDLLEELLCCLMQLITDIPLLDITYEISVEAISTMVVFLSCQLFHKEVLRQSISHKYLMRGPCLPYTSKLVKTLLYNFIRQEKPPPPGAHVFPQQSDGGGLLYGLASGVATGLWTVFTLGGVGSKAAASPELSSPLANQSLLLLLVLANLTDASDAPNPYRQAIMSFKNTQDSSPFPSSIPHAFQINFNSLYTALCEQQTSDQATLLLYTLLHQNSNIRTYMLARTDMENLVLPILEILYHVEERNSHHVYMALIILLILTEDDGFNRSIHEVILKNITWYSERVLTEISLGSLLILVVIRTIQYNMTRTRDKYLHTNCLAALANMSAQFRSLHQYAAQRIISLFSLLSKKHNKVLEQATQSLRGSLSSNDVPLPDYAQDLNVIEEVIRMMLEIINSCLTNSLHHNPNLVYALLYKRDLFEQFRTHPSFQDIMQNIDLVISFFSSRLLQAGAELSVERVLEIIKQGVVALPKDRLKKFPELKFKYVEEEQPEEFFIPYVWSLVYNSAVGLYWNPQDIQLFTMDSD", "length": 669 }, "evidence": [ { "id": "A0A480JQY8", "url": "https://omabrowser.org/oma/group/A0A480JQY8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A480JQY8", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "Golgi organization", "id": "GO:0007030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007030", "evidence": [ { "database": "UniProtKB", "id": "A0A480JQY8", "url": "https://www.uniprot.org/uniprotkb/A0A480JQY8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" }, { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 411, "end_pos": 413, "annotation": "n_glycosylation_sequon" }, { "start_pos": 421, "end_pos": 423, "annotation": "n_glycosylation_sequon" }, { "start_pos": 450, "end_pos": 452, "annotation": "n_glycosylation_sequon" }, { "start_pos": 469, "end_pos": 471, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 282, "end_pos": 284 }, { "start_pos": 293, "end_pos": 295 }, { "start_pos": 411, "end_pos": 413 }, { "start_pos": 421, "end_pos": 423 }, { "start_pos": 450, "end_pos": 452 }, { "start_pos": 469, "end_pos": 471 }, { "start_pos": 4, "end_pos": 6 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480JTU7-1", "uniprot_ac": "A0A480JTU7", "uniprot_id": "A0A480JTU7_PIG", "mass": { "chemical_mass": 85812.0, "monoisotopic_mass": 85812.0 }, "refseq": { "ac": "XP_005669582", "name": "ATR interacting protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669582" }, "gene_names": [ { "name": "ATRIP", "type": "recommended", "evidence": [ { "id": "A0A480JTU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JTU7" } ] }, { "name": "ATRIP", "type": "synonym", "evidence": [ { "id": "XP_005669582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669582" } ] } ], "protein_names": [ { "name": "ATR interacting protein", "type": "synonym", "evidence": [ { "id": "XP_005669582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669582" }, { "id": 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"100523399", "url": "https://www.ncbi.nlm.nih.gov/gene/100523399", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR033349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523399", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523399", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CALAQHH", "url": "https://omabrowser.org/oma/group/CALAQHH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480JTU7", "url": "https://www.orthodb.org/?gene=A0A480JTU7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28594", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28594", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28594:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28594:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28409", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28409", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28426", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28426", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-176187", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176187", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5685938", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685938", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5693607", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6783310", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6783310", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6804756", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69473", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69473", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005669582", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669582", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480JTU7", "url": "https://www.uniprot.org/uniprotkb/A0A480JTU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480JTU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JTU7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH69-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH69-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGIPTPGSRRRSGPPAPNPGPPPSPGHPPSKRARGFPAAAAPDPEDPFGAHGDFTADDLEELDTLASQALSQCPTTGRDMSNVQKVPRLDGMPKNPTGKKRESAPVKDNFELEVLQLQYKELKEKMKAMEEEVLIKNGEIKILRDSLHQTESILEEQRRSHFLLEQEKTQALSDKEKEFSKKLQSLQSELQFKDAEMNELRTKLQSSERANKLAAPSISHASPRKSPSVVIKPEASPQFGKPSFPTKESFSANMSLSHPCQTEPEYKSLTGREVSENKAHSLADDPIKQEESQKSLTDSWMQSSNTQGSILINLLLKQPLIPGSSLGLCHLLSSCSEAPAGTLLQLPGLGSTLTGISSLRTTGSRDGSFPLSALREAQNLALTGLNLVSRNEGFCDRDPAEAGRRAFPLCQLPGAVHLLPLVQFFIGLHCQALQDLAVAKRSGVPGDSPTHPSCVSSGVEASPEDSLCNLEGFSVASLSVLQHLVCHSGAVVCLLLSGAGTDSAVKEEDQSLVHGHGHRDVTSVPAGLADDQDQHPLLKMLLQLLAFSSAAAGHLQASVLSQCLKVLVKLAENASFDFLPRFQCVFRVLPQCLRPETPLPGVLLTVELLSLLADHEKLAPQLCSHSEGCLLLLLYMYITSRPDKAASETQWLQLEQEAVWLLAKLGVQSPSSPVTGSSCQCNVEVVRALTVMLHRQWLTVQRAGALPRTDQQKRTVRCLRDTVLLLHSLSQKDKLFTVHCVEVLHQYDQVMPGVSLLIRGLPDVTDCEEAALDDLCATEPDVDDPEMDCG", "length": 791, "header": "tr|A0A480JTU7-1|A0A480JTU7_PIG Isoform 1 of ATR interacting protein OS=Sus scrofa OX=9823 GN=ATRIP PE=4 SV=1 CANONICAL=A0A480JTU7-1" }, "isoforms": [ { "isoform_ac": "A0A480JTU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JTU7/entry#A0A480JTU7-1", "sequence": { "sequence": "MAGIPTPGSRRRSGPPAPNPGPPPSPGHPPSKRARGFPAAAAPDPEDPFGAHGDFTADDLEELDTLASQALSQCPTTGRDMSNVQKVPRLDGMPKNPTGKKRESAPVKDNFELEVLQLQYKELKEKMKAMEEEVLIKNGEIKILRDSLHQTESILEEQRRSHFLLEQEKTQALSDKEKEFSKKLQSLQSELQFKDAEMNELRTKLQSSERANKLAAPSISHASPRKSPSVVIKPEASPQFGKPSFPTKESFSANMSLSHPCQTEPEYKSLTGREVSENKAHSLADDPIKQEESQKSLTDSWMQSSNTQGSILINLLLKQPLIPGSSLGLCHLLSSCSEAPAGTLLQLPGLGSTLTGISSLRTTGSRDGSFPLSALREAQNLALTGLNLVSRNEGFCDRDPAEAGRRAFPLCQLPGAVHLLPLVQFFIGLHCQALQDLAVAKRSGVPGDSPTHPSCVSSGVEASPEDSLCNLEGFSVASLSVLQHLVCHSGAVVCLLLSGAGTDSAVKEEDQSLVHGHGHRDVTSVPAGLADDQDQHPLLKMLLQLLAFSSAAAGHLQASVLSQCLKVLVKLAENASFDFLPRFQCVFRVLPQCLRPETPLPGVLLTVELLSLLADHEKLAPQLCSHSEGCLLLLLYMYITSRPDKAASETQWLQLEQEAVWLLAKLGVQSPSSPVTGSSCQCNVEVVRALTVMLHRQWLTVQRAGALPRTDQQKRTVRCLRDTVLLLHSLSQKDKLFTVHCVEVLHQYDQVMPGVSLLIRGLPDVTDCEEAALDDLCATEPDVDDPEMDCG", "length": 791, "header": "tr|A0A480JTU7-1|A0A480JTU7_PIG Isoform 1 of ATR interacting protein OS=Sus scrofa OX=9823 GN=ATRIP PE=4 SV=1 CANONICAL=A0A480JTU7-1" }, "locus": { "chromosome": "13", "start_pos": 31178618, "end_pos": 31159949, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012436.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012436.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012111.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012111.5" } ] } }, { "isoform_ac": "A0A5G2QH69-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JTU7/entry#A0A5G2QH69-1", "sequence": { "sequence": "MAGIPTPGSRRRSGPPAPNPGPPPSPGHPPSKRARGFPAAAAPDPEDPFGAHGDFTADDLEELDTLASQALSQCPTTGRDMSNVQKVPRLDGMPKNPTGKKRESAPVKDNFELEVLQLQYKELKEKMKAMEEEVLIKNGEIKILRDSLHQTESILEEQRRSHFLLEQEKTQALSDKEKEFSKKLQSLQSELQFKDAEMNELRTKLQSSERANKLAAPSISHASPRKSPSVVIKPEASPQFGKPSFPTKESFSANMSLSHPCQTEPEYKSLTGREENKAHSLADDPIKQEESQKSLTDSWMQSSNTQGSILINLLLKQPLIPGSSLGLCHLLSSCSEAPAGTLLQLPGLGSTLTGISSLRTTGSRDGSFPLSALREAQNLALTGLNLVSRNEGFCDRDPAEAGRRAFPLCQLPGAVHLLPLVQFFIGLHCQALQDLAVAKRSGVPGDSPTHPSCVSSGVEASPEDSLCNLEGFSVASLSVLQHLVCHSGAVVCLLLSGAGTDSAVKEEDQSLVHGHGHRDVTSVPAGLADDQDQHPLLKMLLQLLAFSSAAAGHLQASVLSQCLKVLVKLAENASFDFLPRFQCVFRVLPQCLRPETPLPGVLLTVELLSLLADHEKLAPQLCSHSEGCLLLLLYMYITSRPDKAASETQWLQLEQEVVRALTVMLHRQWLTVQRAGALPRTDQQKRTVRCLRDTVLLLHSLSQKDKLFTVHCVEVLHQYDQVMPGVSLLIRGLPDVTDCEEAALDDLCATEPDVDDPEMDCG", "length": 762, "header": "tr|A0A5G2QH69-1|A0A480JTU7_PIG Computationally mapped isoform of ATR interacting protein OS=Sus scrofa OX=9823 GN=ATRIP PE=4 SV=1 CANONICAL=A0A480JTU7-1" }, "locus": { "chromosome": "13", "start_pos": 31178618, "end_pos": 31159949, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068536.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068536.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061358.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061358.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523399", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523399", "resource": "KEGG Pathway" }, { "id": "R-SSC-176187", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176187", "resource": "Reactome", "description": "Activation of ATR in response to replication stress" }, { "id": "R-SSC-5685938", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685938", "resource": "Reactome", "description": "HDR through Single Strand Annealing (SSA)" }, { "id": "R-SSC-5693607", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "resource": "Reactome", "description": "Processing of DNA double-strand break ends" }, { "id": "R-SSC-6783310", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6783310", "resource": "Reactome", "description": "Fanconi Anemia Pathway" }, { "id": "R-SSC-6804756", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "resource": "Reactome", "description": "Regulation of TP53 Activity through Phosphorylation" }, { "id": "R-SSC-69473", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69473", "resource": "Reactome", "description": "G2/M DNA damage checkpoint" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LSZ1-1", "protein_name": "ATR-interacting protein isoform X1", "gene_name": "Atrip", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGTPAPSSHRKQSGGPAPLPGLSRAFDNPPSKRARSFSETADPDPEDPFGAHAEFTADDLEELDILASQALSQCPVAPRNSLASAHKVCQLDGSSNSPMRKNKENAPVKDSFELEVLQTQYKELKEKLKAMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSHFLLEQEKTQALNEKEKEFSKKLQSLQSELQFKDAEMNELRTKLQSSERTNKLAASSTSHASPRKGSSVAIKSEACSPHVRKSSFPTKESFSANMPLSHPCQTEAGFKLLVEPEVPDNKTHSLRDNPMKQDVQQKILADSWMQRSNTQGSILINLLLKQPLVPGSSLGLCHLLSSCSEVPIGTLLQPPGLSSTLAGISGLRTIISRDGSFSPSALREAQNLAFTGLNLVARSESSHDGDLAKGSRRVFPLCQLPGAVHLLPLVQFFIGLHCQALQDLASAKKSVAPGDSPTHTSCVSSGVETSLEDSIYHLESFSVTSLSVLQHLVCHSGAVVCLLLSGLGTDAAAREGNPVQTCADTVSASREDAHDKKQHPLLKMLLQLVAFSSTASGHFQASVLSQCLKVLVKLAENASSDFLPRFSCVLPMLPQCLSSELPLPCVLLAVELLSLLVDHDSFAQQLCFHSEGCLLLRLYMYITSRPDKVASETQWLQLEQEVVWLLAKLSVQSPSLPGIGSDCQCNVEAVRVLTVMLHRQWLTVRRAGGPRTPQQKQTMRCLRDTVLLLHSLSQKDKFFTVHCVEVLHQYDQVMPGVSMLIRALPDVADCEEAALDDLCAAETDLEDSEMDCS", "length": 789 }, "evidence": [ { "id": "A0A480JTU7", "url": "https://omabrowser.org/oma/group/A0A480JTU7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8BMG1-1", "protein_name": "ATR-interacting protein", "gene_name": "Atrip", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGTPAPNSHRKQSGGLEPFPGLSRSIENPPSKRARSFSETTVPDPEDPFGEHAEFTADDLEELDILASQALSQCPVAPRNLSSAHKVRRLDGLPNSPIRKSREDIPVKDNFELEVLQIQYKELKEKLKAMEEEILIKNGEIKILRDSLRQTESVLEEQKRSHFLLEQEKTQALSEKEKEFSRKLQSLQSELQFKDAEMNELRTKSQSNGRTNKPAAPSVSHVSPRKGSSVVLKSEACSPHVGKTTFPTKESFSANTPLFHPCQTEAGHRFLVGQEVSDNKNHSLGGSLMKQDVQQRILADGWMQRKDAQGSILINLLLKQPLVPGSSLGLCHLLSSCPEVPTGTLLQPPGLSTLPGTSGLRTISSSDGPFSPSALREAQNLAFTGLNLVARTESSHDGDMAGRRVFPLHQLPGAVHLLPLVQFFVGLHCQALQDLAPAKKSGVPGDSATHTSCMSSGVEASPEDSIHGLESFSVASLSVLQNLVCHSGAVVCLLLSGMGTEAAAREGNLVQTCADTTSASREDAHDQDQHPLLKMLLQLMASSSAASGHFQASVLGLCLKVLVKLAENASSDLLPRFSCVFPVLPQCLGSALPLPCVLLAVELLSVLLDHDSLAWQLCSHPEGCLLLRLYMYITSRPDRTASETQWLQLEQEVVWLLAKLSVQSPAPAGIGSDCHCNVEAVRALTVMLHRQWLTVRRAGGPRTHQQKQTIRCLRDTVLLLHSLSQKDKLFTVHCVEVLHQYDQVMPGVSMLIRALPDVTDCEEAALDDLCAAETDLEDSEMDCN", "length": 785 }, "evidence": [ { "id": "A0A480JTU7", "url": "https://omabrowser.org/oma/group/A0A480JTU7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WXE1-1", "protein_name": "ATR-interacting protein", "gene_name": "ATRIP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGTSAPGSKRRSEPPAPRPGPPPGTGHPPSKRARGFSAAAAPDPDDPFGAHGDFTADDLEELDTLASQALSQCPAAARDVSSDHKVHRLLDGMSKNPSGKNRETVPIKDNFELEVLQAQYKELKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSHFLLEQEKTQALSDKEKEFSKKLQSLQSELQFKDAEMNELRTKLQTSERANKLAAPSVSHVSPRKNPSVVIKPEACSPQFGKTSFPTKESFSANMSLPHPCQTESGYKPLVGREDSKPHSLRGDSIKQEEAQKSFVDSWRQRSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSSESPAGTPLQPPGFGSTLAGMSGLRTTGSYDGSFSLSALREAQNLAFTGLNLVARNECSRDGDPAEGGRRAFPLCQLPGAVHFLPLVQFFIGLHCQALQDLAAAKRSGAPGDSPTHSSCVSSGVETNPEDSVCILEGFSVTALSILQHLVCHSGAVVSLLLSGVGADSAAGEGNRSLVHRLSDGDMTSALRGVADDQGQHPLLKMLLHLLAFSSAATGHLQASVLTQCLKVLVKLAENTSCDFLPRFQCVFQVLPKCLSPETPLPSVLLAVELLSLLADHDQLAPQLCSHSEGCLLLLLYMYITSRPDRVALETQWLQLEQEVVWLLAKLGVQSPLPPVTGSNCQCNVEVVRALTVMLHRQWLTVRRAGGPPRTDQQRRTVRCLRDTVLLLHGLSQKDKLFMMHCVEVLHQFDQVMPGVSMLIRGLPDVTDCEEAALDDLCAAETDVEDPEVECG", "length": 791 }, "evidence": [ { "id": "A0A480JTU7", "url": "https://omabrowser.org/oma/group/A0A480JTU7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A480JTU7", "url": "https://www.uniprot.org/uniprotkb/A0A480JTU7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "A0A480JTU7", "url": "https://www.uniprot.org/uniprotkb/A0A480JTU7" } ], "pmid": "" }, { "name": "DNA damage checkpoint signaling", "id": "GO:0000077", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000077", "evidence": [ { "database": "UniProtKB", "id": "A0A480JTU7", "url": "https://www.uniprot.org/uniprotkb/A0A480JTU7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "K63-linked polyubiquitin modification-dependent protein binding", "id": "GO:0070530", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070530", "evidence": [ { "database": "UniProtKB", "id": "A0A480JTU7", "url": "https://www.uniprot.org/uniprotkb/A0A480JTU7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 574, "end_pos": 576, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480JTU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JTU7" }, { "id": "PF28426", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28426" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ATR-interacting protein C-terminal", "eco_id": "ECO_0000259", "start_pos": 318, "end_pos": 789, "start_aa": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480JY15-1", "uniprot_ac": "A0A480JY15", "uniprot_id": "A0A480JY15_PIG", "mass": { "chemical_mass": 37738.0, "monoisotopic_mass": 37738.0 }, "refseq": { "ac": "XP_003124667", "name": "protein-lysine N-methyltransferase EEF2KMT", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124667" }, "gene_names": [ { "name": "EEF2KMT", "type": "recommended", "evidence": [ { "id": "A0A480JY15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JY15" } ] }, { "name": "EEF2KMT", "type": "synonym", "evidence": [ { "id": "XP_003124667", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124667" } ] } ], "protein_names": [ { "name": "Eukaryotic elongation factor 2 lysine methyltransferase", "type": "synonym", "evidence": [ { "id": "A0A480JY15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JY15/entry#names_and_taxonomy" } ] }, { "name": "protein-lysine N-methyltransferase EEF2KMT", "type": "synonym", "evidence": [ { "id": "XP_003124667", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124667" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480JY15", "url": "https://www.uniprot.org/uniprotkb/A0A480JY15" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EEF2KMT", "url": "https://www.uniprot.org/uniprotkb/A0A480JY15", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000007920", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007920", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523895", "url": "https://www.ncbi.nlm.nih.gov/gene/100523895", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019410", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019410", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029426", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029426", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523895", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523895", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PIRTYRI", "url": "https://omabrowser.org/oma/group/PIRTYRI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480JY15", "url": "https://www.orthodb.org/?gene=A0A480JY15", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14614", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14614", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14614:SF130", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14614:SF130", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10294", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10294", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14904", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14904", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8876725", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876725", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003124667", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124667", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480JY15", "url": "https://www.uniprot.org/uniprotkb/A0A480JY15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480JY15-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JY15-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPEETADAARLLWSFERRFLAARALRSFPWQSLEEKLRDSSGSELLLDILQKTVHHPLCMRHPPPVKYARSFLSELIRKHEAVHTEPLDELYEALAKVLTAEESTRCHRSYLLPSGDAVTLAESLAIISHGTTGLVTWNAALYLAEWALEHPAAFAHRTVLELGSGAGLTGLAICKTCRPRAFVFSDCHSLVLEQLRGNILLNGFSLEPSVSTPSEPPGHDTPQAESPRVTVARLDWDVVTVPQLAALQPDIVIAADVLYCPETLLSLVGVLQKLSACRKDQRAPDAYVAFTVRNPETYQLFITELDQAGILWEVVPGHDQKLFPYEECSEMTILKLTL", "length": 340, "header": "tr|A0A480JY15-1|A0A480JY15_PIG Isoform 1 of Eukaryotic elongation factor 2 lysine methyltransferase OS=Sus scrofa OX=9823 GN=EEF2KMT PE=3 SV=1 CANONICAL=A0A480JY15-1" }, "isoforms": [ { "isoform_ac": "A0A480JY15-1", "url": "https://www.uniprot.org/uniprotkb/A0A480JY15/entry#A0A480JY15-1", "sequence": { "sequence": "MAPEETADAARLLWSFERRFLAARALRSFPWQSLEEKLRDSSGSELLLDILQKTVHHPLCMRHPPPVKYARSFLSELIRKHEAVHTEPLDELYEALAKVLTAEESTRCHRSYLLPSGDAVTLAESLAIISHGTTGLVTWNAALYLAEWALEHPAAFAHRTVLELGSGAGLTGLAICKTCRPRAFVFSDCHSLVLEQLRGNILLNGFSLEPSVSTPSEPPGHDTPQAESPRVTVARLDWDVVTVPQLAALQPDIVIAADVLYCPETLLSLVGVLQKLSACRKDQRAPDAYVAFTVRNPETYQLFITELDQAGILWEVVPGHDQKLFPYEECSEMTILKLTL", "length": 340, "header": "tr|A0A480JY15-1|A0A480JY15_PIG Isoform 1 of Eukaryotic elongation factor 2 lysine methyltransferase OS=Sus scrofa OX=9823 GN=EEF2KMT PE=3 SV=1 CANONICAL=A0A480JY15-1" }, "locus": { "chromosome": "3", "start_pos": 37324370, "end_pos": 37310957, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008680.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008680.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008457.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008457.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 214, "start_aa": "Thr", "end_pos": 214, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr214", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480JY15", "url": "https://www.uniprot.org/uniprotkb/A0A480JY15" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523895", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523895", "resource": "KEGG Pathway" }, { "id": "R-SSC-8876725", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876725", "resource": "Reactome", "description": "Protein methylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z7V3-1", "protein_name": "Eukaryotic elongation factor 2 lysine methyltransferase", "gene_name": "EEF2KMT", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "LGTGEVSPAPQSTHRDVVLHVVVEEPGRDQHPQQEEAAALELEQQLRAAPERSQSSLLADILHQTVLHPLCVRYPPSAAYRRCFLTELIKKHESTAADPLDELYDALARILNEEESAHCYKSYLLPSGEPVTLSESVAIISQGTTGLITWDAALQLAEWATENPAVFTNRTVLELGSGVGFTGLVICKTCNPKTYIFSDYHHCVLKQLTENIHLNGFTLEPETTNPAQGQEAEGKEYQQPKLVVAELDWGSVTEEQLLALQADVVIAADVIYDPEITLSLTGMLQKFSTSRADRKPEVYIALTVRNLDTYHMFQAELDKAGIRWQIIPAHSNSIFLHDTQPNVTILQLFI", "length": 350 }, "evidence": [ { "id": "A0A480JY15", "url": "https://omabrowser.org/oma/group/A0A480JY15/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3Z8P8-1", "protein_name": "Eukaryotic elongation factor 2 lysine methyltransferase", "gene_name": "Eef2kmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPEDHEGATSLLQSFERRFLAARALPSFPWQSLEEKLREPSGSELLLAILQKTVKHPVCVQHGPSLKYSRCFLSKLIKKHEAVPMEPLDALYEALAEVLMARESTQCHRSYLLPSGDSVTLSESTAIVSHGTTGLVTWDAALYLAEWAIENPAAFTDRTILELGSGAGLTGLAICKACYPRAYVFSDCHAQVLEQLRRNVLLNGFSLELHTPIDSGSPKVTVAQLDWDEVTSSQLSAFQADTVIAADVLYCGEVTLSLVRVLRMLTDCQRKKAPDVYVAYTIRSQDTGKLFITELDRAGIHWEEVAPHTGKLFPYEEHSAIVILKLTLTGRHGV", "length": 335 }, "evidence": [ { "id": "A0A480JY15", "url": "https://omabrowser.org/oma/group/A0A480JY15/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q1JPJ9-1", "protein_name": "Protein-lysine N-methyltransferase EEF2KMT", "gene_name": "EEF2KMT", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAPEERADAARLLRGFERRFLAARALRSFPWQSLEEKLRDSSGSELLLDILQKTVKHPLCVKHPPSVKYSRSFLSELIRKHEAVHTEPLDELYQALAEVLTAEDPTHCHRSYLLPSGDSVTLCESTAIVSHGTTGLVTWNAALYLAEWAVENPAVFAHRMVLELGSGAGLTGLAICKTCRPRAYIFSDCHSHVLEQLRGNVLLNGFSLEPSIDTWAQHPGPHTPEAERPWVTVARLDWDTVTAPQLAAFQPDVVLAADVLYCPETVLSLVGVLRKLSTCRKDQRAPDAYIAFTVRNPETCQLFTTELGQAGIPWEEVPCHDQKLFPYEEHSEMAILKLTL", "length": 340 }, "evidence": [ { "id": "A0A480JY15", "url": "https://omabrowser.org/oma/group/A0A480JY15/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3UZW7-1", "protein_name": "Protein-lysine N-methyltransferase EEF2KMT", "gene_name": "Eef2kmt", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPEDHEGATSLLQSFERRFLAARALPSFPWQSLEEKLKDPSGSELLLAILQRTVKHPVCVQHGPSVKYARCFLSKLIKKHEAVPTEPLDALYEALAEVLMTQESTQCHRSYLLPSGNSVTLSESTAIVSHGTTGLVTWDAALYLAEWAIENPAAFTDRTILELGSGAGLTGLAICKACCPRAYIFSDCHAQVLEQLRGNVLLNGFSLEPHTPIDAGSSKVTVAQLDWDEVTASQLSAFQADVVIAADVLYCWEMTLSLVRVLKMLEDCQRKSAPDVYVAYTIRSQDTGKLFIEELDRAGIYWEEVPPHTGKLFPYEEHSAIVILKLVLTSRHGV", "length": 335 }, "evidence": [ { "id": "A0A480JY15", "url": "https://omabrowser.org/oma/group/A0A480JY15/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96G04-1", "protein_name": "Protein-lysine N-methyltransferase EEF2KMT", "gene_name": "EEF2KMT", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPEENAGTELLLQSFERRFLAARTLRSFPWQSLEAKLRDSSDSELLRDILHKTVKHPVCVKHPPSVKYARCFLSELIKKHEAVHTEPLDELYEALAETLMAKESTQGHRSYLLPSGGSVTLSESTAIISYGTTGLVTWDAALYLAEWAIENPAVFTNRTVLELGSGAGLTGLAICKMCRPRAYIFSDCHSRVLEQLRGNVLLNGLSLEADITAKLDSPRVTVAQLDWDVATVHQLSAFQPDVVIAADVLYCPEAIMSLVGVLRRLAACREHQRAPEVYVAFTVRNPETCQLFTTELGRAGIRWEVEPRHEQKLFPYEEHLEMAMLNLTL", "length": 330 }, "evidence": [ { "id": "A0A480JY15", "url": "https://omabrowser.org/oma/group/A0A480JY15/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "A0A480JY15", "url": "https://www.uniprot.org/uniprotkb/A0A480JY15" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A480JY15", "url": "https://www.uniprot.org/uniprotkb/A0A480JY15" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-lysine N-methyltransferase activity", "id": "GO:0016279", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016279", "evidence": [ { "database": "UniProtKB", "id": "A0A480JY15", "url": "https://www.uniprot.org/uniprotkb/A0A480JY15" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480JY15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480JY15" }, { "id": "PF14904", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14904" } ], "ann_type": 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480K124-1", "uniprot_ac": "A0A480K124", "uniprot_id": "A0A480K124_PIG", "mass": { "chemical_mass": 47668.0, "monoisotopic_mass": 47668.0 }, "refseq": {}, "gene_names": [ { "name": "IFRD2", "type": "recommended", "evidence": [ { "id": "A0A480K124", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K124" } ] } ], "protein_names": [ { "name": "Interferon-related developmental regulator 2", "type": "recommended", "evidence": [ { "id": "A0A480K124", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K124/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Ribosome-binding protein that acts as an inhibitor of mRNA translation by promoting ribosome inactivation. Associates with the P- and E-sites of the ribosome and inserts a C-terminal helix into the mRNA exit channel to preclude translation.", "evidence": [ { "database": "UniProtKB", "id": "A0A480K124", "url": "https://www.uniprot.org/uniprotkb/A0A480K124#function" }, { "database": "UniProtKB", "id": "ARBA00053624", "url": "https://www.uniprot.org/uniprotkb/ARBA00053624#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480K124", "url": "https://www.uniprot.org/uniprotkb/A0A480K124" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IFRD2", "url": "https://www.uniprot.org/uniprotkb/A0A480K124", "locus": { "chromosome": "13", "start_pos": 32756680, "end_pos": 32790672, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000051852", "url": "https://www.ensembl.org/id/ENSSSCG00000051852" } ] } } ], "crossref": [ { "id": "100155668", "url": "https://www.ncbi.nlm.nih.gov/gene/100155668", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006921", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006921", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039777", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039777", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155668", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155668", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QCFEAIF", "url": "https://omabrowser.org/oma/group/QCFEAIF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480K124", "url": "https://www.orthodb.org/?gene=A0A480K124", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12354", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12354", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12354:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12354:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04836", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04836", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05004", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05004", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A480K124", "url": "https://www.uniprot.org/uniprotkb/A0A480K124", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480K124-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K124-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRARKGNAPRRGGQRRGGGARSSTQADSGSSEDEAASEARSTTSECPSLLSTAAEEGLGGDAVDEQGQQEDLEEKLKEYVDCLTDKSAKTRQGALESLRLALAAHLLPDFLLERCLTLADALEKCLKKGKGEEQALAAAVLGLLCVQLGPGPKGEELFHSLQPLLVSVLTDGTASPAARLHCASALGLGCYVAAADVQDLVSCLTCLEGVFSRSCGVGGATAPMVPTSLHGLLCAALQAWALLLTICPSTHISHILDRQLPQLPQLLSSESVNLRIAAGETIALLFELARDLEEDFIYEDMEALCGALRTLATDSNKYRAKADRRRQRSTFRSVLHFVEGGECEEETVRFGLEVLYVDSWARRRIYAAFKDVLGSGMHHHLQNNELLRDIFGLGPVLVLDATALKACKISRFEKHLYNAASFKARTKARSRVRDKRADIL", "length": 441, "header": "tr|A0A480K124-1|A0A480K124_PIG Isoform 1 of Interferon-related developmental regulator 2 OS=Sus scrofa OX=9823 GN=IFRD2 PE=3 SV=1 CANONICAL=A0A480K124-1" }, "isoforms": [ { "isoform_ac": "A0A480K124-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K124/entry#A0A480K124-1", "sequence": { "sequence": "MPRARKGNAPRRGGQRRGGGARSSTQADSGSSEDEAASEARSTTSECPSLLSTAAEEGLGGDAVDEQGQQEDLEEKLKEYVDCLTDKSAKTRQGALESLRLALAAHLLPDFLLERCLTLADALEKCLKKGKGEEQALAAAVLGLLCVQLGPGPKGEELFHSLQPLLVSVLTDGTASPAARLHCASALGLGCYVAAADVQDLVSCLTCLEGVFSRSCGVGGATAPMVPTSLHGLLCAALQAWALLLTICPSTHISHILDRQLPQLPQLLSSESVNLRIAAGETIALLFELARDLEEDFIYEDMEALCGALRTLATDSNKYRAKADRRRQRSTFRSVLHFVEGGECEEETVRFGLEVLYVDSWARRRIYAAFKDVLGSGMHHHLQNNELLRDIFGLGPVLVLDATALKACKISRFEKHLYNAASFKARTKARSRVRDKRADIL", "length": 441, "header": "tr|A0A480K124-1|A0A480K124_PIG Isoform 1 of Interferon-related developmental regulator 2 OS=Sus scrofa OX=9823 GN=IFRD2 PE=3 SV=1 CANONICAL=A0A480K124-1" }, "locus": { "chromosome": "13", "start_pos": 32790300, "end_pos": 32757119, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092649.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092649.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079479.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079479.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480K124", "url": "https://www.uniprot.org/uniprotkb/A0A480K124" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155668", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155668", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F4HUS5-1", "protein_name": "Interferon-related developmental regulator family protein / IFRD protein family", "gene_name": "SAT32", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRKSQRKNATMFDSDDDTSSVSSSSTMPSERLLNPGMDEVTVLKDALLDQSLDALYEKRSSTREQALATIVDAFNSDLQYEFVEKKFATLLHQCLHCTKKGSTKETSLATHVIGLLALTVGLGDHAQEVLEESVTPLSQALKSGREILKITSILECLAVITFVGGNDPEQTEKSMQIIWQMIHPKLGSNVVATKPSPAVISAVVSSWAFLLTTVDRWTLGPKIFQETVTYLSTLLEKDDRSVRIAAGEALAVIYELGTLEKFAAEVKGSANGSVKEGGVSQEALMHMHGLKAKVTKQVRELSVEAGGKGSAKKDLNTQRNLFKDLVEFLEDGYAPETSTKVGGDYLQTSTWYQMIQLNYLKHFLGGGFIKHMQENEFLHDVFSFTPKKIGGGKLSNDEKRLFKSPNSALNKARTQFLAKQRMLAKNMNVGHYAATAMEEE", "length": 441 }, "evidence": [ { "id": "A0A480K124", "url": "https://omabrowser.org/oma/group/A0A480K124/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q12894-1", "protein_name": "Interferon-related developmental regulator 2", "gene_name": "IFRD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPRARKGNTLRKGGQRRGGGARSSAQADSGSSDDEAASEARSTASECPSLLSTTAEDSLGGDVVDEQGQQEDLEEKLKEYVDCLTDKSAKTRQGALESLRLALASRLLPDFLLERRLTLADALEKCLKKGKGEEQALAAAVLGLLCVQLGPGPKGEELFHSLQPLLVSVLSDSTASPAARLHCASALGLGCYVAAADIQDLVSCLACLESVFSRFYGLGGSSTSPVVPASLHGLLSAALQAWALLLTICPSTQISHILDRQLPRLPQLLSSESVNLRIAAGETIALLFELARDLEEEFVYEDMEALCSVLRTLATDSNKYRAKADRRRQRSTFRAVLHSVEGGECEEEIVRFGFEVLYMDSWARHRIYAAFKEVLGSGMHHHLQNNELLRDIFGLGPVLLLDATALKACKVPRFEKHLYNAAAFKARTKARSRVRDKRADIL", "length": 442 }, "evidence": [ { "id": "A0A480K124", "url": "https://omabrowser.org/oma/group/A0A480K124/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D8U0-1", "protein_name": "Interferon-related developmental regulator 2", "gene_name": "Ifrd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRARKGNALRKGGQRRGGGARSSTQADSGSSEDEAASEARSTTSDCPSLLSATTEDCLGGEAVDEQSQQENLEEKLKGYVDCLTDKSAKTRQGALESLRLALASRLLPDFLLERSLTLADALEKCLKKGKGEEQALAAAVLGILCVQLGPGPKGEELFRSLQPLLISVLSDSTASPTARLHCASALGLGCYVAATDVQDLVSCLACLEGVFSWSCGTSGSAASLVPASLHGLLCAALQAWALLLTICPGTHISHILDRQLPRLPQLLSSESVNLRIAAGEAIALLFELARDLEEDFVYEDMEALCGSLRTLATDSNKYRAKVDRRRQRSIFRAVLHFVEGGECEEETVRFGLEVLYIDSWARHRIYTAFKDVLGSGIHYHLQNNELLRDIFGLGPVLVLDAAALKACKISRFEKHLYNAAAFKARTKARSRARDKRADIL", "length": 441 }, "evidence": [ { "id": "A0A480K124", "url": "https://omabrowser.org/oma/group/A0A480K124/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VQI5-1", "protein_name": "Interferon-related developmental regulator 1", "gene_name": "Ifrd1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPRRNKKSAAGRGRTNDSNSEDESFDNVSVYSHMSEVASSEATDELANERFEEKFEKALEQATEKSAQTRVQALQAICELLMHRYMPDFVEDRKMTLMDFVEKSIRRGKGQEQVWGARLAPLLVLQMGGDEGISKAMNQFLLNTVQDKSVGFDARAKCCTAVGLLSFLGCEDVGELVHLMQSFEAIFAGSYLRGDDKTPVSVTAEAGTFHAEALNAWGLLLTLIPSGDFVSLMTTGQNMFPSIKKFLGLLQSTHLDVRMAAGETIALILESGRAHEEDFLEDDIAELSEAVKQLATDSHKYRAKRDRKAQRATFRDVLRYLEEDISPEISIRFGTESLTLDSWSIHHQYSAMCTVMGPGMTSQLQENEFIRDIFQLGPRPTNTGINGNAKVKPTKLERHLVNAAAFKARSITRGKNRDKRSAVVT", "length": 425 }, "evidence": [ { "id": "A0A480K124", "url": "https://omabrowser.org/oma/group/A0A480K124/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "translation repressor activity", "id": "GO:0030371", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030371", "evidence": [ { "database": "UniProtKB", "id": "A0A480K124", "url": "https://www.uniprot.org/uniprotkb/A0A480K124" } ], "pmid": "" }, { "name": "ribosome binding", "id": "GO:0043022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043022", "evidence": [ { "database": "UniProtKB", "id": "A0A480K124", "url": "https://www.uniprot.org/uniprotkb/A0A480K124" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480K124", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K124" }, { "id": "PF04836", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04836" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Interferon-related developmental regulator C-terminal", "eco_id": "ECO_0000259", "start_pos": 385, "end_pos": 438, "start_aa": "Asn", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A480K124", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K124" }, { "id": "PF05004", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Interferon-related developmental regulator N-terminal", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 340, "start_aa": "Thr", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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}, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480K168-1", "uniprot_ac": "A0A480K168", "uniprot_id": "A0A480K168_PIG", "mass": { "chemical_mass": 31949.0, "monoisotopic_mass": 31949.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A480K168", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K168/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480K168", "url": "https://www.uniprot.org/uniprotkb/A0A480K168" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A480K168", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000041731", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041731", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008981", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008981", "database": "InterPro", "categories": 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Involved in regulation of cytokinesis; promotes RHOA activity, probably acting locally at the midbody in late cytokinesis. Monooxygenase activity is involved in stabilizing transient structures between daughter cells, termed intercellular bridges, before abscission. Regulates differentiation and proliferation through the regulation of cell death.", "evidence": [ { "database": "UniProtKB", "id": "A0A480K3Q8", "url": "https://www.uniprot.org/uniprotkb/A0A480K3Q8#function" }, { "database": "UniProtKB", "id": "ARBA00093330", "url": "https://www.uniprot.org/uniprotkb/ARBA00093330#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480K3Q8", "url": "https://www.uniprot.org/uniprotkb/A0A480K3Q8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OSGIN1", "url": "https://www.uniprot.org/uniprotkb/A0A480K3Q8", "locus": { "chromosome": "6", "start_pos": 4642764, "end_pos": 4653487, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032115", "url": "https://www.ensembl.org/id/ENSSSCG00000032115" } ] } } ], "crossref": [ { "id": "ENSSSCG00000032115", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032115", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110260904", "url": "https://www.ncbi.nlm.nih.gov/gene/110260904", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR023753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029731", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029731", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110260904", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260904", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ASWDIQT", "url": "https://omabrowser.org/oma/group/ASWDIQT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480K3Q8", "url": "https://www.orthodb.org/?gene=A0A480K3Q8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15192", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15192", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15192:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15192:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07992", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07992", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020949398", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949398", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480K3Q8", "url": "https://www.uniprot.org/uniprotkb/A0A480K3Q8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480K3Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K3Q8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNWRKDHLGASSSEPLPVVIIGNGPSGICLSYLLSGYTPYVKPDAVHPHPLLQRKLSEAPGVSITDQDLDYLSEGLEGRSQSPVALLFDALLRPDTDFGGNTESVLTWKYQKERAIPHLVLGRNLPGGAWHSIEGSMVTLSQGQWMGLPDLQVKDWMCRKRRGLRNSRATAGDIAHYYRDYVIKKGLSHNFVSRAVVTAVDWGMPEPSGPGTQDPSPLFQVRGFVTAEDQSQQPFSLCARNVVLATGTSDSPARLGIPGEALPFVHHHLSALEAATRAGKVTPSSDPVLIIGAGLSAADAVLYARHYNVPVIHAFRRPVDDPGLVFNQLPKMLYPEYHKVHQMMREQSILSPSPYEGYCSLPEHQLLRFKEDRQAVFRNPQGLQKVFGVSLVLVLIGSHPDLSFLPGAGADLAMDPDQPLSAKRNPIDVDPFTYQSTHQEGLYAMGPLAGDNFVRFVQGGALAVASSLLSKEGRKPP", "length": 478, "header": "tr|A0A480K3Q8-1|A0A480K3Q8_PIG Isoform 1 of Oxidative stress-induced growth inhibitor 1 OS=Sus scrofa OX=9823 GN=OSGIN1 PE=3 SV=1 CANONICAL=A0A480K3Q8-1" }, "isoforms": [ { "isoform_ac": "A0A480K3Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K3Q8/entry#A0A480K3Q8-1", "sequence": { "sequence": "MSNWRKDHLGASSSEPLPVVIIGNGPSGICLSYLLSGYTPYVKPDAVHPHPLLQRKLSEAPGVSITDQDLDYLSEGLEGRSQSPVALLFDALLRPDTDFGGNTESVLTWKYQKERAIPHLVLGRNLPGGAWHSIEGSMVTLSQGQWMGLPDLQVKDWMCRKRRGLRNSRATAGDIAHYYRDYVIKKGLSHNFVSRAVVTAVDWGMPEPSGPGTQDPSPLFQVRGFVTAEDQSQQPFSLCARNVVLATGTSDSPARLGIPGEALPFVHHHLSALEAATRAGKVTPSSDPVLIIGAGLSAADAVLYARHYNVPVIHAFRRPVDDPGLVFNQLPKMLYPEYHKVHQMMREQSILSPSPYEGYCSLPEHQLLRFKEDRQAVFRNPQGLQKVFGVSLVLVLIGSHPDLSFLPGAGADLAMDPDQPLSAKRNPIDVDPFTYQSTHQEGLYAMGPLAGDNFVRFVQGGALAVASSLLSKEGRKPP", "length": 478, "header": "tr|A0A480K3Q8-1|A0A480K3Q8_PIG Isoform 1 of Oxidative stress-induced growth inhibitor 1 OS=Sus scrofa OX=9823 GN=OSGIN1 PE=3 SV=1 CANONICAL=A0A480K3Q8-1" }, "locus": { "chromosome": "6", "start_pos": 4649903, "end_pos": 4643134, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066181.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066181.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056375.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056375.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480K3Q8", "url": "https://www.uniprot.org/uniprotkb/A0A480K3Q8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110260904", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260904", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IC61-1", "protein_name": "Oxidative stress-induced growth inhibitor 1", "gene_name": "Osgin1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSWKHNYLRASSSEPLPVVIIGNGPSGICLSYLLSGHIPYVKPGTIHPHPLLQRKLAEAPGVSILDQDLEYLSEGLEGRSQSPVALLFDALLRPDTDFGGSMDSVLSWKQQKERAVPHLVLGRNLPGGAWHSIEGSMVTLSQGQWMSLPDLQVKDWLRKKCRGLRNSRATAGDIAHYYRDYVTKKGLLHNFVSGAIVTAVEQAKSEHGIPEAQAPSPLFQVKGYLTAKDNSHQPFSLWARNVVLATGTLDNPARLGIPGETLPFVHHELSALEAALRAGTVNPNSDPVLIVGAGLSAADAVLFARHYNIQVIHAFRRSVHDPGLVFNQLPKMLYPEYHKVHQMMRDQSILSPSPYEGYRSLPEHLPLLFKEDHQAVFQDPQGGQQLFGVSMVLVLIGSHPNLSYLPRAGADLVIDPDQPLSPKRNPIDVDPFTYESTHQEGLYALGPLAGDNFVRFVQGGALAAASSLLRKETRKPP", "length": 478 }, "evidence": [ { "id": "A0A480K3Q8", "url": "https://omabrowser.org/oma/group/A0A480K3Q8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3S5ZPS7-1", "protein_name": "Oxidative stress-induced growth inhibitor 1", "gene_name": "OSGIN1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKVIFLAPPSARLFPAPEIPGLPGLSHPLGSPRGNVRPAPSAGSLTPGSPRGLTALPSVLDPGRSGRLPAPHPPPATGMSNQRKDHLGASSSEPLRVIIIGNGPSGICLSYLLSGYTPYVRPDAIHPHPLLQRKLSEAPGVSIMDQDLDYLSEGLEGRCQSPVALLFDALLRPDTDFGGSVESVLTWRHQKERAIPHLVLGRNPPGGAWHSIEGSMVTLSQGEWMGLPDLQVKDWMCKKRRGLRNSRATAGDIAHYYRDYVIRKGLSHNFVSSATVTAVEWGTPEPSSPGARDPSPLFQVSGFVTAEDQSQQSFSLRAHNVVLATGTSDSPARLGIPGEALPFVHHDLSALEAATQAGTVSPSSDPVLIIGAGLSAADAVLYARHYSVPVIHAFRRPVDDPGLVFNQLPKMLYPEYHKVHQMMREQSILSPSPYEGYRSLPEHQLLLLKEDRQAVFRDPQGLQKVFGVALVLVLIGSHPDLSFLPGAGTDLAVDPDQPLSAKRNPIEVDPFTYQTIHQEGLYAMGPLAGDNFVRFVQGGALAVASSLLRKEARKPP", "length": 556 }, "evidence": [ { "id": "A0A480K3Q8", "url": "https://omabrowser.org/oma/group/A0A480K3Q8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V1A1Z9-1", "protein_name": "Oxidative stress induced growth inhibitor 1", "gene_name": "OSGIN1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MHSALDRHQNKSGSKPIPVVIIGNGPSGICLSYLLSGYTPYFKRHSLHPHPILQNKLEEAVDVSILDQDLEYLSEGLEGRSNSPVALLFDTLQRPDTDFGVSAESVLTWRHEIDRAIPHLVLGKNPPGGAWHSIEGSMITLSRGEWMGLPDLQFKDWLKQKKRGLRNHRATAEDIAQYYQHYVMKKGLQKNFRCGTVVTSVKKIFRRADKNDDGKLSLEEFQAFFSDGTLNEEELEKLFHTIDSDNTNNVDTKELCDYFADHMGDYEDVLASLETLNLSILKAMDYTKRVYESGSNVDQFVTRFLLKETANQTQSLLSSVESAVDAIDEQTNPSRQCPGPAGLALTEPWYDSPVPSYAPPGRIVPRGHGKSSQSGAPEPRQDGLEGQIGRLAALIGRLEDKTLWFDLHQRLSDSESTACAYLLLVRDEMTVSHKHLGEFCSSLKQYLKSVAGERDCFHVTAVKLPDGVTFIVYEFWETEEDWKRHLQSATCKGFQHVKVDTLSQPEAVSSVAVPAAWCTLSQD", "length": 523 }, "evidence": [ { "id": "A0A480K3Q8", "url": "https://omabrowser.org/oma/group/A0A480K3Q8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8VC10-1", "protein_name": "Oxidative stress-induced growth inhibitor 1", "gene_name": "Osgin1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSWRHDSLGASSSEPLPVVIIGNGPSGICLSYLLSGHIPYVKPGAVHPHPLLQRKLAEAPGVSILDQDLEYLSEGLEGRSQSPVALLFDALLRPDTDFGGSIDSVLSWKRQKDRAVPHLVLGRNLPGGAWHSIEGSMVTLSQGQWMSLPDLQVKDWMRKKCRGLRNSRATAGDIAHYYRDYVIKKGLSHNFVSGAVVTAVEWAKSEHGSPEVQASSPLFQVNGYLTTKDHGHQPFSLRARNVVLATGTFDSPAMLGIPGETLPFVHHDLSALEAALRAGTVNPTSDPVLIVGAGLSAADAVLFARHYNIQVIHAFRRSVHDPGLVFNQLPKMLYPEYHKVQQMMRDQSILSPSPYEGYRSLPEHQPLLFKEDHQAVFQDPQGGQQLFGVSMVLVLIGSHPDLSYLPRAGADLVIDPDQPLSPKRNPIDVDPFTHESTHQEGLYALGPLAGDNFVRFVQGGALAAASSLLKKETRKPP", "length": 478 }, "evidence": [ { "id": "A0A480K3Q8", "url": "https://omabrowser.org/oma/group/A0A480K3Q8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UJX0-1", "protein_name": "Oxidative stress-induced growth inhibitor 1", "gene_name": "OSGIN1", "tax_id": 9606, 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"https://www.uniprot.org/uniprotkb/A0A480K3Q8" } ], "pmid": "" }, { "name": "negative regulation of cell growth", "id": "GO:0030308", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030308", "evidence": [ { "database": "UniProtKB", "id": "A0A480K3Q8", "url": "https://www.uniprot.org/uniprotkb/A0A480K3Q8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "midbody", "id": "GO:0030496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030496", "evidence": [ { "database": "UniProtKB", "id": "A0A480K3Q8", "url": "https://www.uniprot.org/uniprotkb/A0A480K3Q8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "growth factor activity", "id": "GO:0008083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008083", "evidence": [ { "database": "UniProtKB", "id": "A0A480K3Q8", "url": "https://www.uniprot.org/uniprotkb/A0A480K3Q8" } ], "pmid": "" }, { "name": "monooxygenase activity", "id": "GO:0004497", "url": 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domain 73", "type": "synonym", "evidence": [ { "id": "A0A480K409", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K409/entry#names_and_taxonomy" } ] }, { "name": "WD repeat-containing protein 73", "type": "synonym", "evidence": [ { "id": "XP_020954564", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954564" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480K409", "url": "https://www.uniprot.org/uniprotkb/A0A480K409" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WDR73", "url": "https://www.uniprot.org/uniprotkb/A0A480K409", "locus": { "chromosome": "7", "start_pos": 52904146, "end_pos": 52887530, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022451", "url": "https://www.ensembl.org/id/ENSSSCG00000022451" } ] } } ], "crossref": [ { "id": "ENSSSCG00000022451", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022451", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100622907", "url": "https://www.ncbi.nlm.nih.gov/gene/100622907", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100622907", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622907", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CKPRTLL", "url": "https://omabrowser.org/oma/group/CKPRTLL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480K409", "url": "https://www.orthodb.org/?gene=A0A480K409", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46947", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46947", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46947:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46947:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_020954564", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954564", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480K409", "url": "https://www.uniprot.org/uniprotkb/A0A480K409", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480K409-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K409-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPAEDWLVESLRLYQDFHEFDLSGATRVLEWIGDKGILVAGYESLKKNEILHLILPLRLSVKENQGLFPERDFKVRHGGFSDRSVFDLKHVPDTRLLVTSGLPGCYLQVWQVAEDSDVIKAVSTIDAHEKEGHPWPRLAIFSSPAPGVLHGARLSSLKVVDLESHKSTYTSGISEDELLSSLQVLDANTFAFCCTSGRLGLVDTRQKWAPSENLRPSPGSAGGRWYAEVGGRGPGPRIASLGSDGQLCLLDLRDLSQPVSSVQCPVSTPSPDPELLRVTWAPGLDNCLAISGFDGTVQVYDVTSWNGVGGQVEPLFTHRGHIFLDDSGVDTAPLVTTHTWHPCKPRTLLSAASDASLHVWDWVDLRASH", "length": 370, "header": "tr|A0A480K409-1|A0A480K409_PIG Isoform 1 of WD repeat domain 73 OS=Sus scrofa OX=9823 GN=WDR73 PE=4 SV=1 CANONICAL=A0A480K409-1" }, "isoforms": [ { "isoform_ac": "A0A480K409-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K409/entry#A0A480K409-1", "sequence": { "sequence": "MDPAEDWLVESLRLYQDFHEFDLSGATRVLEWIGDKGILVAGYESLKKNEILHLILPLRLSVKENQGLFPERDFKVRHGGFSDRSVFDLKHVPDTRLLVTSGLPGCYLQVWQVAEDSDVIKAVSTIDAHEKEGHPWPRLAIFSSPAPGVLHGARLSSLKVVDLESHKSTYTSGISEDELLSSLQVLDANTFAFCCTSGRLGLVDTRQKWAPSENLRPSPGSAGGRWYAEVGGRGPGPRIASLGSDGQLCLLDLRDLSQPVSSVQCPVSTPSPDPELLRVTWAPGLDNCLAISGFDGTVQVYDVTSWNGVGGQVEPLFTHRGHIFLDDSGVDTAPLVTTHTWHPCKPRTLLSAASDASLHVWDWVDLRASH", "length": 370, "header": "tr|A0A480K409-1|A0A480K409_PIG Isoform 1 of WD repeat domain 73 OS=Sus scrofa OX=9823 GN=WDR73 PE=4 SV=1 CANONICAL=A0A480K409-1" }, "locus": { "chromosome": "7", "start_pos": 52902346, "end_pos": 52887536, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077950.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077950.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064917.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064917.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 269, "start_aa": "Thr", "end_pos": 269, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr269", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480K409", "url": "https://www.uniprot.org/uniprotkb/A0A480K409" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100622907", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622907", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IF21-1", "protein_name": "WD repeat-containing protein 73 isoform X1", "gene_name": "Wdr73", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MELAEDWLVESLRLYQDFHAFDLSGATRVLEWIGEKGVFVAGYESSKKNEILHLILPLRLSVKENQGLFPERDFKVRHGGFSDRSVFDLKHVPDTRLLVTTGLPGCYLQVWQIGEDNDVIEAVSTIDVQDREKSLWPRVSVFSTAAPGILHGTRLSGLKTVDIESQKITYSSGTSDSESLSSLQVLDSDTFAFCGTSGRLGLVDTRQKWAPLEAFSPSPDSSGQRWCADVRNRGQGPGPCVASLGSDGQLCLLDPRNLCHPVSSAQCPVSKSSPDPELLRVSWAPGLDNCLAISGFDGTVQIYDVTSWDGKKSQVESLFTHKGHILLDGNEIDATPLVTTHTWHPCKPRTLLSAASDASLHVWDWVDLQASC", "length": 372 }, "evidence": [ { "id": "A0A480K409", "url": "https://omabrowser.org/oma/group/A0A480K409/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0X3H4-1", "protein_name": "WD repeat domain 73", "gene_name": "WDR73", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAAGERGEEEEEEEEEEEWLLQSLHLYEALHAFELQAPTRVIEWALGKRVCVAGYGCAGRNEILQLLPPAALEAKESRGLCPERDFKVECGGFSNRPVYNLKHVPDTSLLVTSGPPDSSLQLWQMSAEDSDVIKSVSAISTENSTGEGWAKIATISMRAPWVLHGSRLSSTQITEVESRKKVYVAASSSGEEQLSSLAFVDANTSLLCCTAGQLCVADIRQHSPLQAAPIPSAQRGQCWCMAVGRRALCSELSSQPIACLSSAGQLVLMDVRKASQCLASAKCRVPSSSCSAEFLSVSWAPALEGCLAVSAIPQSLSCTKKHVSAAWPCSLFPTSCPGHSASARIPREHPRAPGKVSTEGCNEETFGAAASIWGGFPLQINVWGRGATRRAGEQSNANAAPIKWSLGRKGGWGGGVKRSIGTLWVRLCVCVFVSEVNKLE", "length": 441 }, "evidence": [ { "id": "A0A480K409", "url": "https://omabrowser.org/oma/group/A0A480K409/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9TA72-1", "protein_name": "WD repeat domain 73", "gene_name": "WDR73", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDCSRPAPLSMGLSRYQDFHAFDLSGATRVLEWIGDKGILVAGYDSLKKNEILHLILPLRLSVKENQGLFPERDFKVQHGGFSDRSVCDLKHVPDTRLLVTSGPPGSYLQVWQLAEDSDVIRAVSTIDVHEREEPLWPRVAIFPSVAPGVLHGTRLSSLKVVDLHSQKTMYTSGVSDDDVLSSLQVLDTDTFAFCCSSGRLGLVDTRQRWAPSENLSPGPGSTGRQWCAEAGGRGPGPSIARLGSDGQLCLLDPRDLCQPVSSVQCPVSMPSPEPELLRVTWAPGLDNCLAISGFDGTVQVYDVTSWAGVGRQVEPLFTHRGHIFLDDSGMDPAPLVTTHTWHPYKPRTVLSAASDASLHVWDWVDPCASR", "length": 371 }, "evidence": [ { "id": "A0A480K409", "url": "https://omabrowser.org/oma/group/A0A480K409/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0LB16-1", "protein_name": "WD repeat domain 73", "gene_name": "Wdr73", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "YTSPATKRGGFLPRAEPLERPIQLPCPDTRLLREWGSYCFVSSGVFVAGYESLKKNEILHLILPLRLSVKENQGLYPERDFKVRHGGFSDRAVFDLKHVPDTRLLVTSGLPGCYIQVWQIREDNDVIEAVSTIDVQDKEESLWPRVSIFCSAAPGILHGARLSGLRTVDVESRKITYSSDTTDSESLSSLQVLDADTFAFCGTSGRLGLVDTRQKWAPLETVSPRAGSSGERWCAEVRSKGQGPGPCIASLGSDGQLCLLDPRNLRDPVSSAQCPVFKSSPDPELLRVTWAPGLDNCLAISGFDGTVQIYDVTSWDGKKTQVEALFIHKGHIFLDGNEVESAPLVTTHTWHPSKPRTLLSAASDAALHVWDWVDLQAS", "length": 378 }, "evidence": [ { "id": "A0A480K409", "url": "https://omabrowser.org/oma/group/A0A480K409/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6P4I2-1", "protein_name": "Integrator complex assembly factor WDR73", "gene_name": "WDR73", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPGDDWLVESLRLYQDFYAFDLSGATRVLEWIDDKGVFVAGYESLKKNEILHLKLPLRLSVKENKGLFPERDFKVRHGGFSDRSIFDLKHVPHTRLLVTSGLPGCYLQVWQVAEDSDVIKAVSTIAVHEKEESLWPRVAVFSTLAPGVLHGARLRSLQVVDLESRKTTYTSDVSDSEELSSLQVLDADTFAFCCASGRLGLVDTRQKWAPLENRSPGPGSGGERWCAEVGSWGQGPGPSIASLGSDGRLCLLDPRDLCHPVSSVQCPVSVPSPDPELLRVTWAPGLKNCLAISGFDGTVQVYDATSWDGTRSQDGTRSQVEPLFTHRGHIFLDGNGMDPAPLVTTHTWHPCRPRTLLSATNDASLHVWDWVDLCAPR", "length": 378 }, "evidence": [ { "id": "A0A480K409", "url": "https://omabrowser.org/oma/group/A0A480K409/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CWR1-1", "protein_name": "Integrator complex assembly factor WDR73", "gene_name": "Wdr73", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MELAEDWLVESLRLYQDFHAFDLSGATRVLEWIGEKGVFVAGYESLKKNEILHLILPLRLSVQENQGLHPERDFKVRHGGFSDRSVFDLKHVPDTRLLVTSGLPGCYIQMWQVREDNDVIEAVSTIDVQDKEESLWPRVSVFCSKAPGILHGARLSGLRTVDVESQKITYSSGTADSESLSCLQVLDANTFAFCGNSGRLGLVDTRQKWAALETVSPGSGCSGERWCAEVRNKGQGPGPCIASLGSDGQLCLLDSRNLCHPVSSAQCPVFKPSPDPELLRVTWAPGLDNCLAISGFDGTVQIYDVTSWDGKKTQAEPLFTHKGHIFLDGNDVDSAPLVTTHTWHPRKPRTLLSAASDSSLHVWDWVDLQAS", "length": 371 }, "evidence": [ { "id": "A0A480K409", "url": "https://omabrowser.org/oma/group/A0A480K409/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "A0A480K409", "url": "https://www.uniprot.org/uniprotkb/A0A480K409" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A480K409", "url": "https://www.uniprot.org/uniprotkb/A0A480K409" } ], "pmid": "" }, { "name": "cleavage furrow", "id": "GO:0032154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032154", "evidence": [ { "database": "UniProtKB", "id": "A0A480K409", "url": "https://www.uniprot.org/uniprotkb/A0A480K409" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "A0A480K409", "url": "https://www.uniprot.org/uniprotkb/A0A480K409" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "nucleus organization", "id": "GO:0006997", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006997", "evidence": [ { "database": "UniProtKB", "id": "A0A480K409", "url": "https://www.uniprot.org/uniprotkb/A0A480K409" } ], "pmid": "" }, { "name": "cytoplasmic microtubule organization", "id": "GO:0031122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031122", "evidence": [ { "database": "UniProtKB", "id": "A0A480K409", "url": "https://www.uniprot.org/uniprotkb/A0A480K409" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 269 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480K5P1-1", "uniprot_ac": "A0A480K5P1", "uniprot_id": "A0A480K5P1_PIG", "mass": { "chemical_mass": 25492.0, "monoisotopic_mass": 25492.0 }, "refseq": { "ac": "XP_020919961", "name": "lysophospholipase-like protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919961" }, "gene_names": [ { "name": "LYPLAL1", "type": "recommended", "evidence": [ { "id": "A0A480K5P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1" } ] }, { "name": "LYPLAL1", "type": "synonym", "evidence": [ { "id": "XP_020919961", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919961" } ] } ], "protein_names": [ { "name": "Lysophospholipase-like protein 1", "type": "recommended", "evidence": [ { "id": "A0A480K5P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1/entry#names_and_taxonomy" } ] }, { "name": "3.1.2.22", "type": "synonym", "evidence": [ { "id": "A0A480K5P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1/entry#names_and_taxonomy" } ] }, { "name": "lysophospholipase-like protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020919961", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919961" } ] } ], "function": [ { "annotation": "Palmitoyl thioesterase that catalyzes depalmitoylation of CGAS and KCNMA1. Acts as a regulator of innate immunity by mediating depalmitoylation of CGAS, thereby preventing CGAS homodimerization and cyclic GMP-AMP synthase activity. Does not exhibit phospholipase nor triacylglycerol lipase activity, able to hydrolyze only short chain substrates due to its shallow active site.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0G4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0G4#function" }, { "database": "UniProtKB", "id": "ARBA00057451", "url": "https://www.uniprot.org/uniprotkb/ARBA00057451#function" }, { "database": "UniProtKB", "id": "A0A480K5P1", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480K5P1", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LYPLAL1", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1", "locus": { "chromosome": "10", "start_pos": 9062412, "end_pos": 8946487, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010817", "url": "https://www.ensembl.org/id/ENSSSCG00000010817" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010817", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010817", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515402", "url": "https://www.ncbi.nlm.nih.gov/gene/100515402", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003140", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003140", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050565", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050565", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LEYPHIK", "url": "https://omabrowser.org/oma/group/LEYPHIK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10655", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10655", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10655:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10655:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02230", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02230", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020919961", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919961", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19233", "url": "https://www.rhea-db.org/rhea/19233", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A480K5P1", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480K5P1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0G4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0G4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0G4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAASGSMRLQRCIVSPAGRHSASLIFLHGSGDSGQGLRTWIKQVLNQDLTFQHIKVIYPTAPPRPYTPLKGGISNVWFDRFKISNDCPEHLESIDVTCQVLTDLINDEVKSGIRKNRILIGGFSMGGCMAMHLAFRNHQDVAGVFALSSFLNTASAVYQALQQSDGLLPELFQCHGTADELVLHAWGEETNSTLTSLGVSTRFHSLPGVHHELSKAELEKLKSWILTKLPE", "length": 232, "header": "tr|A0A480K5P1-1|A0A480K5P1_PIG Isoform 1 of Lysophospholipase-like protein 1 OS=Sus scrofa OX=9823 GN=LYPLAL1 PE=3 SV=1 CANONICAL=A0A480K5P1-1" }, "isoforms": [ { "isoform_ac": "A0A480K5P1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1/entry#A0A480K5P1-1", "sequence": { "sequence": "MAAASGSMRLQRCIVSPAGRHSASLIFLHGSGDSGQGLRTWIKQVLNQDLTFQHIKVIYPTAPPRPYTPLKGGISNVWFDRFKISNDCPEHLESIDVTCQVLTDLINDEVKSGIRKNRILIGGFSMGGCMAMHLAFRNHQDVAGVFALSSFLNTASAVYQALQQSDGLLPELFQCHGTADELVLHAWGEETNSTLTSLGVSTRFHSLPGVHHELSKAELEKLKSWILTKLPE", "length": 232, "header": "tr|A0A480K5P1-1|A0A480K5P1_PIG Isoform 1 of Lysophospholipase-like protein 1 OS=Sus scrofa OX=9823 GN=LYPLAL1 PE=3 SV=1 CANONICAL=A0A480K5P1-1" }, "locus": { "chromosome": "10", "start_pos": 8978227, "end_pos": 8946518, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088357.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088357.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062453.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062453.1" } ] } }, { "isoform_ac": "A0A5G2R0G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1/entry#A0A5G2R0G4-1", "sequence": { "sequence": "MAAASGSMRLQRCIVSPAGRHSASLIFLHGSGDSGQGLRTWIKQVLNQDLTFQHIKVIYPTAPPRPYTPLKGGISNVWFDRFKISNDCPEHLESIDVTCQVLTDLINDEVKSGIRKNRILIGGFSMGGCMAMHLAFRNHQDVAGVFALSSFLNTASAVYQALQQSDGLLPELFQCHGTADELVLHAWGEETNSTLTSLGATLKGGEAGALSISMKKIQAD", "length": 220, "header": "tr|A0A5G2R0G4-1|A0A480K5P1_PIG Computationally mapped isoform of Lysophospholipase-like protein 1 OS=Sus scrofa OX=9823 GN=LYPLAL1 PE=3 SV=1 CANONICAL=A0A480K5P1-1" }, "locus": { "chromosome": "10", "start_pos": 9016083, "end_pos": 8946518, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066526.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066526.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067691.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067691.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 61, "start_aa": "Thr", "end_pos": 61, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr61", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0G4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0G4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LED6-1", "protein_name": "palmitoyl-protein hydrolase", "gene_name": "Lyplal1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MHLTAEHRAAHSWPDKGAERLPKRMRTPMPAQLACVRGPVTLGAWPGALLSLFRHGCITQRCAPSALCGVPSRETQCFADLPAWLRPYTPLKGGFSNVWFDRFKISNDCPEHLESIDSMCQVLTGLIDDEVKNGIEKSRILIGGFSMGGCMAMHLAYRKHPGVAGVFVLSGFLNKASAVYQDLQQGGRAFPELFQCHGTADDLVLHAWGEETNSNLKSLGVSTTFHSLPDVYHELSRPELERLNCHEAARRDRWAE", "length": 256 }, "evidence": [ { "id": "A0A480K5P1", "url": "https://omabrowser.org/oma/group/A0A480K5P1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3UFF7-1", "protein_name": "Lysophospholipase-like protein 1", "gene_name": "Lyplal1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAVPSAVHLPRCVVSPTGRHSASLIFLHGSGHSGQGQREWIKHVLNQDLTFQHIKIIYPTAPSRPYTPLKGGLSNVWFDRFKISMDCPEHLESIDSMCQVLSGLIDEEVKTGIQKSRILIGGFSMGGCMAMHLAYRSHPDVAGVFVLSGFLNKASVVYQDLQQGGRMLPELFQCHGSADNLVLHAWGKETNSKLKSLGVSTTFHSLPNLNHELNKTELEKLKSWILTRLPGETDGQSE", "length": 239 }, "evidence": [ { "id": "A0A480K5P1", "url": "https://omabrowser.org/oma/group/A0A480K5P1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5VWZ2-1", "protein_name": "Lysophospholipase-like protein 1", "gene_name": "LYPLAL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAASGSVLQRCIVSPAGRHSASLIFLHGSGDSGQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESIDVMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAIHLAYRNHQDVAGVFALSSFLNKASAVYQALQKSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVYHELSKTELDILKLWILTKLPGEMEKQK", "length": 237 }, "evidence": [ { "id": "A0A480K5P1", "url": "https://omabrowser.org/oma/group/A0A480K5P1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9LW14-1", "protein_name": "Alpha/beta-Hydrolases superfamily protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSYSRQSMGSGSRSTRGYEFGRTYVVRPKGKHQATIVWLHGLGDNGSSSSQLLESLPLPNIKWICPTAPSRPVSLLGGFPCTAWFDVGEISEDLHDDIEGLDASAAHIANLLSAEPTDVKVGIGGFSMGAAIALYSTTCYALGRYGTGHAYTINLRATVGLSGWLPGWRSLRSKIESSNEVARRAASIPILLAHGTSDDVVPYRFGEKSAHSLAMAGFRQTMFKPYEGLGHYTVPKEMDEVVHWLVSRLGLEGSR", "length": 255 }, "evidence": [ { "id": "A0A480K5P1", "url": "https://omabrowser.org/oma/group/A0A480K5P1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VGV9-1", "protein_name": "palmitoyl-protein hydrolase", "gene_name": "Dmel\\CG6567", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MKPALTTVNATGKHTASVIFFHGSGDTGPNVLEWVRFLIGRNLEYPHIKIIYPTAPKQKYTPLDGELSNVWFDRKSVNIAASESKKSMSQCYDAVNQLIDEEVASGIPLNRIVVGGFSMGGALALHTGYHLRRSLAGVFAHSSFLNRGSVVYDSLANGKDESFPELRMYHGERDTLVPKDWGLETFENLTKLGVKGTFHPLRNTLHELKTASITDLQQWIYEKLPPLENQVQNKL", "length": 235 }, "evidence": [ { "id": "A0A480K5P1", "url": "https://omabrowser.org/oma/group/A0A480K5P1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A480K5P1", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A480K5P1", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of Golgi to plasma membrane protein transport", "id": "GO:0042997", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042997", "evidence": [ { "database": "UniProtKB", "id": "A0A480K5P1", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1" } ], "pmid": "" }, { "name": "negative regulation of cGAS/STING signaling pathway", "id": "GO:0160049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160049", "evidence": [ { "database": "UniProtKB", "id": "A0A480K5P1", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "palmitoyl-(protein) hydrolase activity", "id": "GO:0008474", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008474", "evidence": [ { "database": "UniProtKB", "id": "A0A480K5P1", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19233", "name": "", "equation": "S-hexadecanoyl-L-cysteinyl-[protein] + H2O = L-cysteinyl-[protein] + hexadecanoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19233", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19233" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480K5P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K5P1" }, { "id": "PF02230", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02230" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phospholipase/carboxylesterase/thioesterase", "eco_id": "ECO_0000259", "start_pos": 13, "end_pos": 227, "start_aa": "Cys", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 61 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 192, "end_pos": 194 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480K665-1", "uniprot_ac": "A0A480K665", "uniprot_id": "A0A480K665_PIG", "mass": { "chemical_mass": 77428.0, "monoisotopic_mass": 77428.0 }, "refseq": { "ac": "XP_005663883", "name": "FAD-dependent oxidoreductase domain-containing protein 2 precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663883" }, "gene_names": [ { "name": "FOXRED2", "type": "recommended", "evidence": [ { "id": "A0A480K665", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K665" } ] }, { "name": "FOXRED2", "type": "synonym", "evidence": [ { "id": "XP_005663883", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663883" } ] } ], "protein_names": [ { "name": "FAD-dependent oxidoreductase domain-containing protein 2", "type": "recommended", "evidence": [ { "id": "A0A480K665", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480K665/entry#names_and_taxonomy" } ] }, { "name": "FAD-dependent oxidoreductase domain-containing protein 2 precursor", "type": "synonym", "evidence": [ { "id": "XP_005663883", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663883" } ] } ], "function": [ { "annotation": "Probable flavoprotein which may function in endoplasmic reticulum associated degradation (ERAD). May bind non-native proteins in the endoplasmic reticulum and target them to the ubiquitination machinery for subsequent degradation.", "evidence": [ { "database": "UniProtKB", "id": "A0A480K665", "url": "https://www.uniprot.org/uniprotkb/A0A480K665#function" }, { "database": "UniProtKB", "id": "ARBA00056122", "url": "https://www.uniprot.org/uniprotkb/ARBA00056122#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480K665", "url": "https://www.uniprot.org/uniprotkb/A0A480K665" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FOXRED2", "url": "https://www.uniprot.org/uniprotkb/A0A480K665", "locus": { "chromosome": "5", "start_pos": 11254064, "end_pos": 11233902, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000142", "url": "https://www.ensembl.org/id/ENSSSCG00000000142" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000142", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000142", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513010", "url": "https://www.ncbi.nlm.nih.gov/gene/100513010", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR036188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050982", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050982", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KGQAYQC", "url": "https://omabrowser.org/oma/group/KGQAYQC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480K665", "url": "https://www.orthodb.org/?gene=A0A480K665", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43539", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43539", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43539:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43539:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13738", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13738", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005663883", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663883", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480K665", "url": "https://www.uniprot.org/uniprotkb/A0A480K665", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480K665-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K665-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLSAAAPLWGPLGLLLAIALHPALSVSPASEPAHRDYCVLGAGPAGLQMAYFLQRAGRDYTVFERAARPGSFFTRYPRHRKLISINKRYTGKANAEFNLRHDWNSLLSHDPQLLFRHYSSAYFPDASDMVRYLGDFADRLGLRVRYNTTIAHVTLNKDGQAWNGHYFILTDQKGQTFQCSVLLVATGLSVPNQVDFPGAEYMDGYESVSVDPKDFVGQNVLILGRGNSAFETAENILGVTNFIHMLSRSRVRLSWATHYVGDLRAINNGLLDTYQLKSLDGLLESDLANLAIVKDHKGKFHITLKLYLEVGNHSADAIPLPEDESDNFAMRVPYDRVIRCLGWNFDFSIFSKSLRLSSGGDFSKKYPLVRASYESKGSRGLFILGTASHSVDYRKSAGGFIHGFRYTARAVHRLLEQRHHGVAWPATEHPVTQLASAIIRRINEASGLYQMFGVLADVVLMKENATAFEYLEEFPMQMLAQLETITGRQARHGLFVVNMEYGKNFSGPDKDVFYYDRSVGYTEDAWLSNFLHPVIYYYRHLPTEQEVRFRPADWPLPRPTAIHHVVEDFLTDWTAPVGHILPLRRFLENCLDTDLRNFYAESCFLFALTRQKLPPFCQQGYLRTQGLVGTESLRRHGVESGLLQDYAAEGWPWQDSSQQPDDHGPGGYTLAPGPPVQALDSNKEEL", "length": 687, "header": "tr|A0A480K665-1|A0A480K665_PIG Isoform 1 of FAD-dependent oxidoreductase domain-containing protein 2 OS=Sus scrofa OX=9823 GN=FOXRED2 PE=3 SV=1 CANONICAL=A0A480K665-1" }, "isoforms": [ { "isoform_ac": "A0A480K665-1", "url": "https://www.uniprot.org/uniprotkb/A0A480K665/entry#A0A480K665-1", "sequence": { "sequence": "MGLSAAAPLWGPLGLLLAIALHPALSVSPASEPAHRDYCVLGAGPAGLQMAYFLQRAGRDYTVFERAARPGSFFTRYPRHRKLISINKRYTGKANAEFNLRHDWNSLLSHDPQLLFRHYSSAYFPDASDMVRYLGDFADRLGLRVRYNTTIAHVTLNKDGQAWNGHYFILTDQKGQTFQCSVLLVATGLSVPNQVDFPGAEYMDGYESVSVDPKDFVGQNVLILGRGNSAFETAENILGVTNFIHMLSRSRVRLSWATHYVGDLRAINNGLLDTYQLKSLDGLLESDLANLAIVKDHKGKFHITLKLYLEVGNHSADAIPLPEDESDNFAMRVPYDRVIRCLGWNFDFSIFSKSLRLSSGGDFSKKYPLVRASYESKGSRGLFILGTASHSVDYRKSAGGFIHGFRYTARAVHRLLEQRHHGVAWPATEHPVTQLASAIIRRINEASGLYQMFGVLADVVLMKENATAFEYLEEFPMQMLAQLETITGRQARHGLFVVNMEYGKNFSGPDKDVFYYDRSVGYTEDAWLSNFLHPVIYYYRHLPTEQEVRFRPADWPLPRPTAIHHVVEDFLTDWTAPVGHILPLRRFLENCLDTDLRNFYAESCFLFALTRQKLPPFCQQGYLRTQGLVGTESLRRHGVESGLLQDYAAEGWPWQDSSQQPDDHGPGGYTLAPGPPVQALDSNKEEL", "length": 687, "header": "tr|A0A480K665-1|A0A480K665_PIG Isoform 1 of FAD-dependent oxidoreductase domain-containing protein 2 OS=Sus scrofa OX=9823 GN=FOXRED2 PE=3 SV=1 CANONICAL=A0A480K665-1" }, "locus": { "chromosome": "5", "start_pos": 11251071, "end_pos": 11234559, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057822.2", "url": "https://www.ensembl.org/id/ENSSSCT00000057822.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042097.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042097.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480K665", "url": "https://www.uniprot.org/uniprotkb/A0A480K665" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LPK0-1", "protein_name": "FAD-dependent oxidoreductase domain-containing protein 2", "gene_name": "Foxred2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNSWVPGFSPGPAPDPWEAQALGFSFLGKAGCHQLPTTRCEASPLLCRRMGPSGLLVALALHLAVCSRPHRDYCVLGAGPAGLQMAALLHRAGRDYEVFERESAPGSFFTRYPRHRKLISINKRYTGKANAEFNLRHDWNSLLSDDPHLLFRHYSQAYFPDASDMVRYLGDFAQRLGLRVLYNTNITHVTLDKDPQAWNGHYFILRDQKGQVYQCSVLLVATGLAVPKLVDFPGSEYVEGYESVSVDPEDFVGQNVLILGHGNSAFETAENILGVTNFVHMLSRSRVRLSWATHYVGDVRAINNGLLDTYQLKSLDGLLESDLEYLALVKDSKGKFHITLKFLLENSSNQSADSIPLPQDDNDNFAMRVAYDRVIRCLGWKFDFSIFNQSLRLSSGTEFSKKYPLIKASYESKGSRGLFILGTASHSVDYRKSAGGFIHGFRYTVRAVHRLLEHRHHGITWPSTQYPITQLTSSIIRRVNEASGLYQMFSVLADIILLKENATAFEYLEEFPIQMLAQLEMLTGRTARHGIFVINMEYGKNFSGPEKDVFYYDRSVAHIEDAWMSNFLHPVIYYYRHLPTEQDMRFRPAQWPLPRPVAIHHIVEDFLTDWTAPVGHILPLRRFLENCLDTDLRSFYAESCFLFTLTRQKLPPFCQQGYLRMQGLSSTKSLRQHGVESRLLQDYTAMENSSRWLDDHSSAPGPLTQFLDSNREEL", "length": 714 }, "evidence": [ { "id": "A0A480K665", "url": "https://omabrowser.org/oma/group/A0A480K665/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0UXS1-1", "protein_name": "FAD-dependent oxidoreductase domain-containing protein 2", "gene_name": "foxred2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSVIQLVFRLLCVLDLLLAVSASGLHGRNRTLSHEYCVLGAGPAGLQMGYFLSRSQRDYIILERNAGPGSFFNIYPRHRKLISINKIYTGRRNKEFNLRHDWNSLLSDRPDLLFQRISRKLYPSADDFPHYLSLFEKELGLKVKYGTDVGRIKASDFNGHQGYVLTDQNGVNYQCRVLLVSTGLWVPQEVDFRGSDLVEGYESIPTDPEEFKDQAVLILGKGNSAFETAQSILGRASRIHLYSPSPVRLAWQTHYVGDLRAVNNELLDTYQLKSLDGLVEGRLEDIAIVRRAKDRGKRRAAKKRNSTSTKRNEPLYLTLTELLDDQNDTNISNVTGQNLPGYHTDNFSLRQPYDRVIRCLGFRFNFSIFDGSARPPQSSGARGRLPGVTAWYEGRGTPNMFVLGIAAHSRDYRMSAGGFIHGFRYTVRAVHKILEQRYHNIAWPTTNIPISQLQSWILRRVNEASGTYQMFGVLGDIILLQGSHCEYLEEFPLQALPQLSALSGRSISDHGLLVLVMQYGLNHTDTLGPGRAESEWTKAWKSNFLHPVLYYYKTLPTDKDMRQRPVGWPLPRPEAVHHMVEDFLTEWDQPISHSQPLRRFLEHCLKTDLRAFYAESCFLLSLTSRNPPLFCRQGYLRKQGIMGNRHLWQHAREAGLMEDAALSEDASVPEYLNHAGAAVISTVNFDL", "length": 687 }, "evidence": [ { "id": "A0A480K665", "url": "https://omabrowser.org/oma/group/A0A480K665/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E1BD49-1", "protein_name": "FAD-dependent oxidoreductase domain-containing protein 2", "gene_name": "FOXRED2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGLSTVAPLWGAPGLLLTIALHLALYLRPAQAWAPVHRDYCVLGAGPAGLQMAYFLQRAGRDYMVFERAPVPGSFFTRYPRHRKLISINKRYTGKTNAEFNLRHDWNSLLSHDPRLLFRHYSDAYYPDANDMVRYLSDFAERLGLHVLYNTTIAHVTVNKDRGAWNGHYFILTDHRGQAYQCSVLLVATGLSVPNQVDFPGSEYVDGYESVSVDPKDFEGQNVLILGRGNSAFETAENIFSVTNFIHMLSRSRVRLSWATHYVGDLRAINNGLLDTYQLKSLDGLLESDLTDLAIVKDHKGKFHITLKLFMEEFFNQSSDAIPLPQDNNDNFAMRVAYDRVIRCLGWKFDFSIFSKSLRLSSGSELSEKYPLVRASYESKGSRGLFILGTASHSVDYRKSAGGFIHGFRYTVRAVHRLLEQRHHGVAWPSTEHPITHLASAIIRRINEASGLYQMFSVLADVVLLKENATTFEYLEEFPMQMLAQLETITGKRARHGLFVINMEYGRNYSGPDKDVFFSDRSVGHMEDAWLSNFLHPVIYYYRHLPTEQEVRFRPAGWPLPRPSALHHVVEDFLTDWTAPVGHILPLRRFLENCLDTDLRSFYAESCFLFALTHQKLPPFCQQGYLRTQGLVGTESLRQHGVESGLLWDSATMGQNQGASDQRPGDHGPGGHPLAPGPPVSPFNSNKEEL", "length": 690 }, "evidence": [ { "id": "A0A480K665", "url": "https://omabrowser.org/oma/group/A0A480K665/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1C6M2-1", "protein_name": "FAD-dependent oxidoreductase domain-containing protein 2", "gene_name": "FOXRED2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MARGLFLRLVLSALCAAGAAAFLYHDYCVLGAGPAGLQAAYFLQRAGRDYVVFERSHAPGSFFAIYPRHRKLISINKRHTGKSNSEFNLRHDWNSLLSHEPRLLFRRYSRQFFPHADAMVRYLEDFAAMLGLRIRYDTAIVHVTLEKDPRAWNGHYFVLSDQNRQSYKCSCLLVATGTWVPNVVNFPGSEYVEGYETVSTNPEDFAGQTVLILGRGNSAFETAENILGVTNFIHMVSRSRVRLSWATHYVGDLRAINNGLLDTYQLKSLDGLLEGDLEDLAIVKDKKGKLHITLRFYLENRNTSAGIDGITLPQDELDNFATRAPYDRVIRCLGWKFDFSIYNRSLRMMPGRGNKSKYPQIKPSYESRGTRGLFVLGTASHSVDFRKSAGGFIHGFRYTTRAVHRLLENRHHGVPWPSAVYPITQLTNSIIKRVNEASGLYQMFSVLADIILLRENATAFEYLEEYPVGILAELETQTGRKAPAGLFVVIMEYGRNFSGDDKDVFYYNRAVGEAQHAWQSNFLHPVIYYYKRLPTEREMRLHPPDWPLPRPDAIHHIVEDFLTDWTAPNAHILPLRRFLENCLSTDLRNFFAESCFLFALTRQKLPPFCQQGYARMQGLTGSERLRRHAVEAGLLEDYAVTDFSGDKLPDSRQGSHDQLLRDHVIPLRPLHHLVNAKDEF", "length": 680 }, "evidence": [ { "id": "A0A480K665", "url": "https://omabrowser.org/oma/group/A0A480K665/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3IJ28-1", "protein_name": "FAD-dependent oxidoreductase domain-containing protein 2", "gene_name": "Foxred2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGPLGLLLALAMHLAVCTRPHRDYCVLGAGPAGLQMAALLQRAGRDYEVFERESAPGSFFTRYPRHRKLISINKRHTGKANAEFNLRHDWNSLLSDDPRLLFRHYSKAYFPDASDMVHYLGDFAKCLGLRVLYNTNITHVTLDKDPQAWNGHYFILTDQNGQAYQCSVLLVATGLSVPKLVDFPGSEHVEGYESVSVDPEDFVGQNVLILGRGNSAFETAENILGVTNFVHMLSRSRVRLSWATHYVGDVRAINNGLLDTYQLKSLDGLLESDLEYLALVKDSKGKLHITLKFLLEENNSSQSADSIPLPQDENDNFAMRVAYDRVIRCLGWKFDFSIFNQSLRLSSGTEFSKKYPLIRASYESKGSRGLFILGTASHSVDYRKSAGGFIHGFRYTVRAVHRLLEHRHHGIAWPSTEHPITQLTSSIIRRVNEASGLYQMFSVLADIILLKENATAFEYLEEFPMQMLAQLETLTGRTARHGLFVINMEYGKNFSGPEKDVFYYDRSVAHIEDAWRSNFLHPVIYFYRHLPTEQDMRFRPAQWPLPRPVAVHHIVEDFLTDWTAPVGHILPLRRFLENCLDTDLRSFYAESCFLFTLTRQRLPPFCQQGYLKMQGVSSTKSLRQHGVESRLLQDYTTMEDSNLWLGDQPSAPGPLTQSLDSNKEEL", "length": 666 }, "evidence": [ { "id": "A0A480K665", "url": "https://omabrowser.org/oma/group/A0A480K665/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3USW5-1", "protein_name": "FAD-dependent oxidoreductase domain-containing protein 2", "gene_name": "Foxred2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGPSGLLVALALHLAVCSRPHRDYCVLGAGPAGLQMAAFLHRAGRDYEVFERESAPGSFFTRYPRHRKLISINKRHTGKANAEFNLRHDWNSLLSDDPHLLFRHYSQAYFPDASDMVRYLGDFARRLGLHVLYNTNITHVTLDKDPQAWNGHYFILTDQKGQVYQCSVLLVATGLAVPKLVDFPGSEYVEGYESVSVDPEDFVGQNVLILGHGNSAFETAENILGVTNFVHMLSRSRVRLSWATHYVGDVRAINNGLLDTYQLKSLDGLLESDLEYLALVKDSKGKFHVTLKFLLENNSSQSADSIPLPEDDNDNFAMRVAYDRVIRCLGWTFDFSIFDQSLRLSSGTEFSKKYPLIKASYESKGSRGLFILGTASHSVDYRKSAGGFIHGFRYTVRAVHRLLEHRHHGIPWPSTEYPITQLTSSIIRRVNEASGLYQMFSVLADIILLKENATAFEYLEEFPMQMLAQLEMLTGRTARHGLFVINMEYGKNFSGPEKDVFYYDRSVAHIEDAWMSNFLHPVIYYYRHLPTEQDMRFRPAQWPLPRPTAIHHIVEDFLTDWTAPVGHILPLRRFLENCLDTDLRSFYAESCFLFTLTRQRLPPFCQQGYLRMQGLSSTKSLWQHGVESRLLQDYTAMENSNRWLGDHSTAPEPLTQSLDSNKEEL", "length": 665 }, "evidence": [ { "id": "A0A480K665", "url": "https://omabrowser.org/oma/group/A0A480K665/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IWF2-1", "protein_name": "FAD-dependent oxidoreductase domain-containing protein 2", "gene_name": "FOXRED2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGLSAAAPLWGPPGLLLAIALHPALSVPPRRDYCVLGAGPAGLQMAYFLQRAGRDYAVFERAPRPGSFFTRYPRHRKLISINKRYTGKANAEFNLRHDWNSLLSHDPRLLFRHYSRAYFPDARDMVRYLGDFADTLGLRVQYNTTIAHVTLDKDRQAWNGHYFILTDQKGQVHQCSVLFVATGLSVPNQVDFPGSEYAEGYESVSVDPEDFVGQNVLILGRGNSAFETAENILGVTNFIHMLSRSRVRLSWATHYVGDLRAINNGLLDTYQLKSLDGLLESDLTDLAILKDSKGKFHVTPKFFLEEANTNQSADSITLPQDDNDNFAMRVPYDRVIRCLGWNFDFSIFNKSLRLNSGNAFGKKYPLIRASYESKGSRGLFILGTASHSVDYRKSAGGFIHGFRYTVRAVHRLLEHRHHSVTWPATELPITQLTSSIVRRVNEASGLYQMFGVLADVILLKENSTAFEYLEEFPIQMLAQLETLTGRKAKHGLFVINMEYGRNFSGPDKDVFFDDRSVGHTEDAWQSNFLHPVIYYYRYLPTEQEVRFRPAHWPLPRPTAIHHIVEDFLTDWTAPIGHILPLRRFLENCLDTDLRSFYAESCFLFALTRQKLPPFCQQGYLRMQGLVSTESLWQHRVESRLLRDYAPTGRRLEDSSQQLGDQEPLGSPLAPGPLAQSVDSNKEEL", "length": 684 }, "evidence": [ { "id": "A0A480K665", "url": "https://omabrowser.org/oma/group/A0A480K665/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum lumen", "id": "GO:0005788", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005788", "evidence": [ { "database": "UniProtKB", "id": "A0A480K665", "url": "https://www.uniprot.org/uniprotkb/A0A480K665" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "flavin adenine dinucleotide binding", "id": "GO:0050660", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050660", "evidence": [ { "database": "UniProtKB", "id": "A0A480K665", "url": "https://www.uniprot.org/uniprotkb/A0A480K665" } ], "pmid": "" }, { "name": "monooxygenase activity", "id": "GO:0004497", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004497", "evidence": [ { "database": "UniProtKB", "id": "A0A480K665", "url": "https://www.uniprot.org/uniprotkb/A0A480K665" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "ERAD pathway", "id": "GO:0036503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036503", "evidence": [ { "database": "UniProtKB", "id": "A0A480K665", "url": "https://www.uniprot.org/uniprotkb/A0A480K665" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 148, "end_pos": 150, "annotation": "n_glycosylation_sequon" }, { "start_pos": 313, "end_pos": 315, "annotation": "n_glycosylation_sequon" }, { "start_pos": 465, "end_pos": 467, "annotation": "n_glycosylation_sequon" }, { "start_pos": 505, "end_pos": 507, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 148, "end_pos": 150 }, { "start_pos": 313, "end_pos": 315 }, { "start_pos": 465, "end_pos": 467 }, { "start_pos": 505, "end_pos": 507 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480KD82-1", "uniprot_ac": "A0A480KD82", "uniprot_id": "A0A480KD82_PIG", "mass": { "chemical_mass": 115063.0, "monoisotopic_mass": 115063.0 }, "refseq": { "ac": "XP_020948515", "name": "serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948515" }, "gene_names": [ { "name": "ANKRD52", "type": "recommended", "evidence": [ { "id": "A0A480KD82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480KD82" } ] }, { "name": "ANKRD52", "type": "synonym", "evidence": [ { "id": "XP_020948515", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948515" } ] } ], "protein_names": [ { "name": "Ankyrin repeat domain 52", "type": "synonym", "evidence": [ { "id": "A0A480KD82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480KD82/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020948515", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948515" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480KD82", "url": "https://www.uniprot.org/uniprotkb/A0A480KD82" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANKRD52", "url": "https://www.uniprot.org/uniprotkb/A0A480KD82", "locus": { "chromosome": "5", "start_pos": 21637613, "end_pos": 21657045, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000386", "url": "https://www.ensembl.org/id/ENSSSCG00000000386" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000386", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000386", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519313", "url": "https://www.ncbi.nlm.nih.gov/gene/100519313", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519313", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519313", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VKNNDQW", "url": "https://omabrowser.org/oma/group/VKNNDQW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480KD82", "url": "https://www.orthodb.org/?gene=A0A480KD82", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24166:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24166:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020948515", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948515", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480KD82", "url": "https://www.uniprot.org/uniprotkb/A0A480KD82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480KD82-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KD82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGILSITDQPPLVQAIFSRDVEEVRSLLSQKENINVLDQERRTPLHAAAYVGDVPILQLLLMSGANVNAKDTLWLTPLHRAAASRNEKVLGLLLAHSADVNARDKLWQTPLHVAAANRATKCAEALAPLLSSLNVADRSGRSALHHAVHSGHLETVNLLLNKGASLNVCDKKERQPLHWAAFLGHLEVLKLLVARGADLGCKDRKGYGLLHTAAASGQIEVVKYLLRMGAEIDEPNAFGNTALHIACYLGQDAVAIELVNAGANVNQPNDKGFTPLHVAAVSTNGALCLELLVNNGADVNYQSKEGKSPLHMAAIHGRFTRSQILIQNGSEIDCADKFGNTPLHVAARYGHELLISTLMTNGADTARRGIHDMFPLHLAVLFGFSDCCRKLLSSGQLYSIVSSLSNEHVLSAGFDINTPDNLGRTCLHAAASGGNVECLNLLLSSGADLRRRDKFGRTPLHYAAANGSYQCAVTLVTAGAGVNEADCKGCSPLHYAAASDTYRRAEPHSSSSHDAEEDEPLKESRRKEAFFCLEFLLDNGADPSLRDRQGYTAVHYAAAYGNRQNLELLLEMSFNCLEDVESTIPVSPLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALFLATERGSTECVEVLTAHGASALIKERKRKWTPLHAAAASGHTDSLHLLIDSGERADITDVMDAYGQTPLMLAIMNGHVDCVHLLLEKGSTADAADLRGRTALHRGAVTGCEDCLAALLDHDAFVLCRDFKGRTPIHLASACGHTAVLRTLLQAALSTDPLDAGVDYSGYSPMHWASYTGHEDCLELLLEHSPFSYLEGNPFTPLHCAVINNQDSTTEMLLGALGAKIVNSRDAKGRTPLHAAAFADNVSGLRMLLQHQAEVNATDHTGHTALMTAAENGQTAAVEFLLYRGKADLTVLDENKNTALHLACSKGHEKCALMILAETQDLGLINATNSALQMPLHIAARNGLASVVQALLSRGATVLAVDEEGHTPALACAPNKDVADCLALILSTMKPFPPKDAVSPFSFSLLKNCGIAAAKTVGGCGALPHGASCPYSQERHGAIGLDGCYSE", "length": 1076, "header": "tr|A0A480KD82-1|A0A480KD82_PIG Isoform 1 of Ankyrin repeat domain 52 OS=Sus scrofa OX=9823 GN=ANKRD52 PE=4 SV=1 CANONICAL=A0A480KD82-1" }, "isoforms": [ { "isoform_ac": "A0A480KD82-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KD82/entry#A0A480KD82-1", "sequence": { "sequence": "MGILSITDQPPLVQAIFSRDVEEVRSLLSQKENINVLDQERRTPLHAAAYVGDVPILQLLLMSGANVNAKDTLWLTPLHRAAASRNEKVLGLLLAHSADVNARDKLWQTPLHVAAANRATKCAEALAPLLSSLNVADRSGRSALHHAVHSGHLETVNLLLNKGASLNVCDKKERQPLHWAAFLGHLEVLKLLVARGADLGCKDRKGYGLLHTAAASGQIEVVKYLLRMGAEIDEPNAFGNTALHIACYLGQDAVAIELVNAGANVNQPNDKGFTPLHVAAVSTNGALCLELLVNNGADVNYQSKEGKSPLHMAAIHGRFTRSQILIQNGSEIDCADKFGNTPLHVAARYGHELLISTLMTNGADTARRGIHDMFPLHLAVLFGFSDCCRKLLSSGQLYSIVSSLSNEHVLSAGFDINTPDNLGRTCLHAAASGGNVECLNLLLSSGADLRRRDKFGRTPLHYAAANGSYQCAVTLVTAGAGVNEADCKGCSPLHYAAASDTYRRAEPHSSSSHDAEEDEPLKESRRKEAFFCLEFLLDNGADPSLRDRQGYTAVHYAAAYGNRQNLELLLEMSFNCLEDVESTIPVSPLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALFLATERGSTECVEVLTAHGASALIKERKRKWTPLHAAAASGHTDSLHLLIDSGERADITDVMDAYGQTPLMLAIMNGHVDCVHLLLEKGSTADAADLRGRTALHRGAVTGCEDCLAALLDHDAFVLCRDFKGRTPIHLASACGHTAVLRTLLQAALSTDPLDAGVDYSGYSPMHWASYTGHEDCLELLLEHSPFSYLEGNPFTPLHCAVINNQDSTTEMLLGALGAKIVNSRDAKGRTPLHAAAFADNVSGLRMLLQHQAEVNATDHTGHTALMTAAENGQTAAVEFLLYRGKADLTVLDENKNTALHLACSKGHEKCALMILAETQDLGLINATNSALQMPLHIAARNGLASVVQALLSRGATVLAVDEEGHTPALACAPNKDVADCLALILSTMKPFPPKDAVSPFSFSLLKNCGIAAAKTVGGCGALPHGASCPYSQERHGAIGLDGCYSE", "length": 1076, "header": "tr|A0A480KD82-1|A0A480KD82_PIG Isoform 1 of Ankyrin repeat domain 52 OS=Sus scrofa OX=9823 GN=ANKRD52 PE=4 SV=1 CANONICAL=A0A480KD82-1" }, "locus": { "chromosome": "5", "start_pos": 21656970, "end_pos": 21642965, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044069.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044069.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034616.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034616.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480KD82", "url": "https://www.uniprot.org/uniprotkb/A0A480KD82" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519313", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519313", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A0V2-1", "protein_name": "Ankyrin repeat domain 52", "gene_name": "ANKRD52", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGGDDGRPAAVEAELVISAATGTSLVPRGWRWVCRPAPNTARGGGAVRHRLPPVFVLFLWGFFFFTSNRGVLSLLHSDGPPLVQAIFNRDVEEVRSLLNQKENINVLDQERRTPLHAAAYIGDVAILELLILSGANVNAKDTVWLTPLHRAAASRNEKALHLLLKHSADVNARDKYWQTPLHVAAANRATKCVEAIIPLLSTVNVADRTGRTALHHAVHSGHLEMVNLLLNKGASLSTCDKKDRQPIHWAAFLGHLEVLKLLVARGADVMCKDKKGYTLLHTAAASGQIEVVRHLLRLGVEIDEPNSFGNTALHIACYMGQDAVANELVNYGANVNQPNEKGFTPLHFAAVSTNGALCLELLVNNGADVNFQSKEGKSPLHMAAIHGRFTRSQILIQNGSEIDCADKYGNTPLHVAARYGHELLISTLMTNGADTARRGIHDMFPLHLAVLFGFSDCCRKLLSSGQLYSIVSSLSNEHVLSAGFDINTPDNLGRTCLHAAASGGNVECLNLLLSSGADLRRRDKFGRTPLHYAAANGSYQCTVTLVTAGASINEADCKGCTPLHYAAASDTYRRAETHSGNSHDTDEEPLKESRMKEAFFCLEFLLDNGADPSLRDKQGYTAVHYAAAYGNRQNLELLLEMSFNCLEDVESTIPVSPLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALYLATERGSTECVEVLTSHGASALVKERKRKWTPLHAAAANGNTDSLHLLIDSGERADITDVMDIHGQTPLMLAIMNGHVDCVHLLLEKGSTADAADKRGRTALHRGAVTGCEDCLAALLDHDAFVLCRDFKGRTPIHFASACGHLEILRTLLQAALSTDPLDSVVDYSGYSPMHWASYSGHEDCLELLLEHNPFAYLEGNPFTPLHCAVINNQDSTAEMLVEALGAKIVNSRDAKGRTPLHAAAFADNIHGLQLLLRHQAEVDTTDKLGRTPLMMASENGHTAAVEFLLYQAKANITVLDVNKNTALHLACSKGHEKCALLILGETQDLGLINASNSALQMPLHIAARNGLATVVQALLSRGATVLAVDEEGHTPALACAPNKDVADCLALILSTMKPFPPKDAISSFSFNLLKNCGIAAKTAACGALPNGSTCPYSKDRHNAIGLDGCYSE", "length": 1144 }, "evidence": [ { "id": "A0A480KD82", "url": "https://omabrowser.org/oma/group/A0A480KD82/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9S1F6-1", "protein_name": "Ankyrin repeat domain 52", "gene_name": "ANKRD52", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGILSITDQPPLVQAIFSRDVEEVRSLLSQKENINVLDQERRTPLHAAAYVGDVPILQLLLMSGANVNAKDTLWLTPLHRAAASRNEKVLGLLLAHSADVNARDKLWQTPLHVAAANRATKCAEALAPLLSSLNVADRSGRSALHHAVHSGHLETVNLLLNKGASLNVCDKKERQPLHWAAFLGHLEVLKLLVARGADLGCKDRKGYGLLHTAAASGQIEVVKYLLRMGAEIDEPNAFGNTALHIACYLGQDAVAIELVNAGANVNQPNDKGFTPLHVAAVSTNGALCLELLVNNGADVNYQSKEGKSPLHMAAIHGRFTRSQILIQNGSEIDCADKFGNTPLHVAARYGHELLISTLMTNGADTARRGIHDMFPLHLAVLFGFSDCCRKLLSSGQLYSIVSSLSNEHVLSAGFDINTPDNLGRTCLHAAASGGNVECLNLLLSSGADLRRRDKFGRTPLHYAAANGSYQCAVTLVTAGAGVNEADCKGCSPLHYAAASDTYRRAEPHSPSSHDAEEDEPLKESRRKEAFFCLEFLLDNGADPSLRDRQGYTAVHYAAAYGNRQNLELLLEMSFNCLEDVESTIPVSPLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALFLATERGSTECVEVLTTHGASALIKERKRKWTPLHAAAASGHTDSLHLLIDSGERADITDVMDAYGQTPLMLAIMNGHVDCVHLLLEKGSTADAADLRGRTALHRGAVTGCEDCLAALLDHDAFVLCRDFKGRTPIHLASACGHTAVLRTLLQAALSTDPLDTGVDYSGYSPMHWASYTGHEDCLELLLEHSPFSYLEGNPFTPLHCAVINNQDSTTEMLLGALGAKIVNSRDAKGRTPLHAAAFADNVSGLRMLLQHQAEVNATDHTGRTALMTAAENGQTAAVEFLLYRGKADLTVLDENKNTALHLACSKGHEKCALMILAETQDLGLINATNSALQMPLHIAARNGLASVVQALLSRGATVLAVDEEGHTPALACAPNKDVADCLALILSTMKPFPPKDAVSPFSFSLLKNCGIAAAKTVGGCGALPHGASCPYSQERHGAIGLDGCYSE", "length": 1076 }, "evidence": [ { "id": "A0A480KD82", "url": "https://omabrowser.org/oma/group/A0A480KD82/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BTI7-1", "protein_name": "Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C", "gene_name": "Ankrd52", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGILSITDQPPLVQAIFSRDVEEVRSLLSQKENINVLDQERRTPLHAAAYVGDVPILQLLLMSGANVNAKDTLWLTPLHRAAASRNEKVLGLLLAHSADVNARDKLWQTPLHVAAANRATKCAEALAPLLSSLNVADRSGRSALHHAVHSGHLETVNLLLNKGASLNVCDKKERQPLHWAAFLGHLEVLKLLVARGADLSCKDRKGYGLLHTAAASGQIEVVKHLLRMGAEIDEPNAFGNTALHIACYLGQDAVAIELVNAGANVNQPNDKGFTPLHVAAVSTNGALCLELLVNNGADVNYQSKEGKSPLHMAAIHGRFTRSQILIQNGSEIDCADKFGNTPLHVAARYGHELLISTLMTNGADTARRGIHDMFPLHLAVLFGFSDCCRKLLSSGQLYSIVSSLSNEHVLSAGFDINTPDSLGRTCLHAAASGGNVECLNLLLSSGADLRRRDKFGRTPLHYAAANGSYQCAVTLVTAGAGVNEADCKGCSPLHYAAASDTYRRAEPHTASSHDAEEDELLKESRRKEAFFCLEFLLDNGADPSLRDRQGYTAVHYAAAYGNRQNLELLLEMSFNCLEDVESTVPVSPLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALFLATERGSTECVEVLTAHGASALIKERKRKWTPLHAAAASGHTDSLHLLIDSGERADITDVMDAYGQTPLMLAIMNGHVDCVHLLLEKGSTADAADLRGRTALHRGAVTGCEDCLAALLDHDAFVLCRDFKGRTPIHLASACGHTAVLRTLLQAALSTDPLDAGVDYSGYSPMHWASYTGHEDCLELLLEHSPFSYLEGNPFTPLHCAVINNQDSTTEMLLGALGAKIVNSRDAKGRTPLHAAAFADNVSGLRMLLQHQAEVNATDHTGRTALMTAAESGQTAAVEFLLYRGKADLTVLDENKNTALHLACSKGHEKCALMILAETQDLGLINATNSALQMPLHIAARNGLASVVQALLSRGATVLAVDEEGHTPALACAPNKDVADCLALILSTMKPFPPKDAVSPFSFSLLKNCGIAAAKTVGGCGALPHGASCPYSQERHGAIGLDGCYSE", "length": 1076 }, "evidence": [ { "id": "A0A480KD82", "url": "https://omabrowser.org/oma/group/A0A480KD82/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NB46-1", "protein_name": "Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C", "gene_name": "ANKRD52", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGILSITDQPPLVQAIFSRDVEEVRSLLSQKENINVLDQERRTPLHAAAYVGDVPILQLLLMSGANVNAKDTLWLTPLHRAAASRNEKVLGLLLAHSADVNARDKLWQTPLHVAAANRATKCAEALAPLLSSLNVADRSGRSALHHAVHSGHLETVNLLLNKGASLNVCDKKERQPLHWAAFLGHLEVLKLLVARGADLGCKDRKGYGLLHTAAASGQIEVVKYLLRMGAEIDEPNAFGNTALHIACYLGQDAVAIELVNAGANVNQPNDKGFTPLHVAAVSTNGALCLELLVNNGADVNYQSKEGKSPLHMAAIHGRFTRSQILIQNGSEIDCADKFGNTPLHVAARYGHELLISTLMTNGADTARRGIHDMFPLHLAVLFGFSDCCRKLLSSGQLYSIVSSLSNEHVLSAGFDINTPDNLGRTCLHAAASGGNVECLNLLLSSGADLRRRDKFGRTPLHYAAANGSYQCAVTLVTAGAGVNEADCKGCSPLHYAAASDTYRRAEPHTPSSHDAEEDEPLKESRRKEAFFCLEFLLDNGADPSLRDRQGYTAVHYAAAYGNRQNLELLLEMSFNCLEDVESTIPVSPLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALFLATERGSTECVEVLTAHGASALIKERKRKWTPLHAAAASGHTDSLHLLIDSGERADITDVMDAYGQTPLMLAIMNGHVDCVHLLLEKGSTADAADLRGRTALHRGAVTGCEDCLAALLDHDAFVLCRDFKGRTPIHLASACGHTAVLRTLLQAALSTDPLDAGVDYSGYSPMHWASYTGHEDCLELLLEHSPFSYLEGNPFTPLHCAVINNQDSTTEMLLGALGAKIVNSRDAKGRTPLHAAAFADNVSGLRMLLQHQAEVNATDHTGRTALMTAAENGQTAAVEFLLYRGKADLTVLDENKNTALHLACSKGHEKCALMILAETQDLGLINATNSALQMPLHIAARNGLASVVQALLSHGATVLAVDEEGHTPALACAPNKDVADCLALILSTMKPFPPKDAVSPFSFSLLKNCSIAAAKTVGGCGALPHGASCPYSQERPGAIGLDGCYSE", "length": 1076 }, "evidence": [ { "id": "A0A480KD82", "url": "https://omabrowser.org/oma/group/A0A480KD82/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 328, "end_pos": 330, "annotation": "n_glycosylation_sequon" }, { "start_pos": 466, "end_pos": 468, "annotation": "n_glycosylation_sequon" }, { "start_pos": 870, "end_pos": 872, "annotation": "n_glycosylation_sequon" }, { "start_pos": 885, "end_pos": 887, "annotation": "n_glycosylation_sequon" }, { "start_pos": 955, "end_pos": 957, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 328, "end_pos": 330 }, { "start_pos": 466, "end_pos": 468 }, { "start_pos": 870, "end_pos": 872 }, { "start_pos": 885, "end_pos": 887 }, { "start_pos": 955, "end_pos": 957 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480KQN9-1", "uniprot_ac": "A0A480KQN9", "uniprot_id": "A0A480KQN9_PIG", "mass": { "chemical_mass": 169280.0, "monoisotopic_mass": 169280.0 }, "refseq": { "ac": "XP_003124050", "name": "arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124050" }, "gene_names": [ { "name": "ARAP3", "type": "recommended", "evidence": [ { "id": "A0A480KQN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9" } ] }, { "name": "ARAP3", "type": "synonym", "evidence": [ { "id": "XP_003124050", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124050" } ] } ], "protein_names": [ { "name": "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3", "type": "recommended", "evidence": [ { "id": "A0A480KQN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9/entry#names_and_taxonomy" } ] }, { "name": "Centaurin-delta-3", "type": "synonym", "evidence": [ { "id": "A0A480KQN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9/entry#names_and_taxonomy" } ] }, { "name": "arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_003124050", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124050" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480KQN9", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARAP3", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9", "locus": { "chromosome": "2", "start_pos": 143304080, "end_pos": 143327588, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014391", "url": "https://www.ensembl.org/id/ENSSSCG00000014391" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014391", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014391", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04385", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04385", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09490", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09490", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13253", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13253", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13254", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13254", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17902", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17902", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100511744", "url": "https://www.ncbi.nlm.nih.gov/gene/100511744", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037278", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037278", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037858", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037858", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038508", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038508", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052227", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052227", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511744", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511744", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TLNTMEM", "url": "https://omabrowser.org/oma/group/TLNTMEM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45899", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45899", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45899:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45899:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00788", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00788", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07647", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07647", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8980692", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013148", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013423", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003124050", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124050", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480KQN9", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480KQN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RM54", "url": "https://www.uniprot.org/uniprotkb/F1RM54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RM54-1", "url": "https://www.uniprot.org/uniprotkb/F1RM54-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPQDLDIAVWLAAVHLEQYADAFRRQGLATAGAARGLGHEELRQLGISATGHRKRILRLLQAGAAEGSPDPRPDSAMEPSPSPAAQAQPAKPVPKPRTVFGGLSGSTPTQRPGLTSALWRPEAAGSAESSPKSPSVPAFSAEQSSALNTVEMMPNAIYFGLDLRGGAQAAQDTAPDSAQAAAPTPALRPATGTVHIMDPGCLYYGVQPVGVPGAPDRREGRGVCQERAEHRLSRQDLEAREDAGYASLELPGAAPLSLPALDTDPSDDLISPYASFSSTADRPMPLLSGWLDKLSPQGNYVFQRRFVQFNGRSLMYFGSDKDPFPKGVIPLTAIEMTRSSKDNKFQVITGQRVFVFRTESEAQRDTWCSTLQSCLKEQRLLGHPRSPQPPRPLRTGMLELRGHKAKVFAALSPGELALYKSEQAFSLGIGICFIELQGCSVRETKSRSFDLLTPHRCFSFTAESGGARQSWAAALQEAVTETLSDYEVAEKIWSNRANRHCADCGASRPDWAAVNLGVVICKQCAGQHRALGSGISKVQSLKLDTSVWSNEIVQLFIVLGNDRANRFWAGALPAGEGLHPDSTPGSRGEFISRKYRLGLFRKPHPQHPDHSQLLQALCAAVAGPNLLKNMTQLLCVEAFEGEESWSPSALDGSFPGVLSSDPSPGVYNEVVVPATYSSFLYCSPISNKAGPPPPRRGRDAPPRLWCVLGAALEMFVSESSPEPLSLIQPQDVVCLGVSPPPTDPGDLDRFPFAFELILTGGRIQHFGTDGADSLEAWTSAVGKWFSPLSCHQLLGPGLLRLGRLWLRSPSHTALAPGLWLAGFGLLRGDHLFLCPAPGPGPPAPEDMVHLRRLQEISVVSAADTPEKKEHLVLVETGRTLYLQAEGRLDFSAWSAAIGGAAGGGGTGLQEQQMSRGDIPIIVDACISFVTQHGLRLEGVYRKGGARARSLRLLAEFRRDARSVKLRPGEHFVEDVTDTLKRFFRELDDPVTSARLLPRWREAAELPQKHQRLEKYKEVIGSLPRVNRRTLATLIGHLYRVQKCAALNQMCTRNLALLFAPSIFQTDGRGEHEVRVLQELIDGYISVFDIDPDQVAQIDLEVSLITTWKDVQLSQAGDLIMEVFIEQQLPDNCVTLKVSPTLTAEELTNQVLEIRGTAAGTDLWVTFEIREHGELERPLHPKERVLEQALQWCQLPEPCSASLLLRKVSLAQAGCLFTGIRRESPRVGLLRCREEPPRLLGNRFQERFFLLRGRCLLLLKEKKSSKPEREWPLEGAKVYLGIRKKFKPPTPWGFTLILEKMHLQLSCTDEDEMWDWTTSILKAQYDDQQPVVLRRRSSSDLARQKFGTMPLLPIRGDDSGATLLSANQTLRRLHNRRTLSMFFPMKSSQGSVEEQEELEEPVYEEPVYEEVGAFPELTEDPFASFSTRREQTAKPETPLASQRSFDQPFLPKAGPLGWEERRPEPPPGPPSKSSPQAQGSLEEQLLQELSSLILRKGEATVGLGNPSQPSSPQPPSPSGLATQTPGFSTPAPCTSSPPPGQPLT", "length": 1545, "header": "tr|A0A480KQN9-1|A0A480KQN9_PIG Isoform 1 of Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 OS=Sus scrofa OX=9823 GN=ARAP3 PE=4 SV=1 CANONICAL=A0A480KQN9-1" }, "isoforms": [ { "isoform_ac": "A0A480KQN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9/entry#A0A480KQN9-1", "sequence": { "sequence": "MAAPQDLDIAVWLAAVHLEQYADAFRRQGLATAGAARGLGHEELRQLGISATGHRKRILRLLQAGAAEGSPDPRPDSAMEPSPSPAAQAQPAKPVPKPRTVFGGLSGSTPTQRPGLTSALWRPEAAGSAESSPKSPSVPAFSAEQSSALNTVEMMPNAIYFGLDLRGGAQAAQDTAPDSAQAAAPTPALRPATGTVHIMDPGCLYYGVQPVGVPGAPDRREGRGVCQERAEHRLSRQDLEAREDAGYASLELPGAAPLSLPALDTDPSDDLISPYASFSSTADRPMPLLSGWLDKLSPQGNYVFQRRFVQFNGRSLMYFGSDKDPFPKGVIPLTAIEMTRSSKDNKFQVITGQRVFVFRTESEAQRDTWCSTLQSCLKEQRLLGHPRSPQPPRPLRTGMLELRGHKAKVFAALSPGELALYKSEQAFSLGIGICFIELQGCSVRETKSRSFDLLTPHRCFSFTAESGGARQSWAAALQEAVTETLSDYEVAEKIWSNRANRHCADCGASRPDWAAVNLGVVICKQCAGQHRALGSGISKVQSLKLDTSVWSNEIVQLFIVLGNDRANRFWAGALPAGEGLHPDSTPGSRGEFISRKYRLGLFRKPHPQHPDHSQLLQALCAAVAGPNLLKNMTQLLCVEAFEGEESWSPSALDGSFPGVLSSDPSPGVYNEVVVPATYSSFLYCSPISNKAGPPPPRRGRDAPPRLWCVLGAALEMFVSESSPEPLSLIQPQDVVCLGVSPPPTDPGDLDRFPFAFELILTGGRIQHFGTDGADSLEAWTSAVGKWFSPLSCHQLLGPGLLRLGRLWLRSPSHTALAPGLWLAGFGLLRGDHLFLCPAPGPGPPAPEDMVHLRRLQEISVVSAADTPEKKEHLVLVETGRTLYLQAEGRLDFSAWSAAIGGAAGGGGTGLQEQQMSRGDIPIIVDACISFVTQHGLRLEGVYRKGGARARSLRLLAEFRRDARSVKLRPGEHFVEDVTDTLKRFFRELDDPVTSARLLPRWREAAELPQKHQRLEKYKEVIGSLPRVNRRTLATLIGHLYRVQKCAALNQMCTRNLALLFAPSIFQTDGRGEHEVRVLQELIDGYISVFDIDPDQVAQIDLEVSLITTWKDVQLSQAGDLIMEVFIEQQLPDNCVTLKVSPTLTAEELTNQVLEIRGTAAGTDLWVTFEIREHGELERPLHPKERVLEQALQWCQLPEPCSASLLLRKVSLAQAGCLFTGIRRESPRVGLLRCREEPPRLLGNRFQERFFLLRGRCLLLLKEKKSSKPEREWPLEGAKVYLGIRKKFKPPTPWGFTLILEKMHLQLSCTDEDEMWDWTTSILKAQYDDQQPVVLRRRSSSDLARQKFGTMPLLPIRGDDSGATLLSANQTLRRLHNRRTLSMFFPMKSSQGSVEEQEELEEPVYEEPVYEEVGAFPELTEDPFASFSTRREQTAKPETPLASQRSFDQPFLPKAGPLGWEERRPEPPPGPPSKSSPQAQGSLEEQLLQELSSLILRKGEATVGLGNPSQPSSPQPPSPSGLATQTPGFSTPAPCTSSPPPGQPLT", "length": 1545, "header": "tr|A0A480KQN9-1|A0A480KQN9_PIG Isoform 1 of Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 OS=Sus scrofa OX=9823 GN=ARAP3 PE=4 SV=1 CANONICAL=A0A480KQN9-1" }, "locus": { "chromosome": "2", "start_pos": 143325885, "end_pos": 143304640, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056738.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056738.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037502.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037502.2" } ] } }, { "isoform_ac": "F1RM54-1", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9/entry#F1RM54-1", "sequence": { "sequence": "MAAPQDLDIAVWLAAVHLEQYADAFRRQGLATAGAARGLGHEELRQLGISATGHRKRILRLLQAGAAEGSPDPRPDSAMEPSPSPAAQAQPAKPVPKPRTVFGGLSGSTPTQRPGLTSALWRPEAAGSAESSPKSPSVPAFSAEQSSALNTVEMMPNAIYFGLDLRGGAQAAQDTAPDSAQAAAPTPALRPATGTVHIMDPGCLYYGVQPVGVPGAPDRREGRGVCQERAEHRLSRQDLEAREDAGYASLELPGAAPLSLPALDTDPSDDLISPYASFSSTADRPMPLLSGWLDKLSPQGNYVFQRRFVQFNGRSLMYFGSDKDPFPKGVIPLTAIEMTRSSKDNKFQVITGQRVFVFRTESEAQRDTWCSTLQSCLKEQRLLGHPRSPQPPRPLRTGMLELRGHKAKVFAALSPGELALYKSEQAFSLGIGICFIELQGCSVRETKSRSFDLLTPHRCFSFTAESGGARQSWAAALQEAVTETLSDYEVAEKIWSNRANRHCADCGASRPDWAAVNLGVVICKQCAGQHRALGSGISKVQSLKLDTSVWSNEIVQLFIVLGNDRANRFWAGALPAGEGLHPDSTPGSRGEFISRKYRLGLFRKPHPQHPDHSQLLQALCAAVAGPNLLKNMTQLLCVEAFEGEESWSPSALDGSFPGVLSSDPSPGVYNEVVVPATYSSFLYCSPISNKAGPPPPRRGRDAPPRLWCVLGAALEMFVSESSPEPLSLIQPQDVVCLGVSPPPTDPGDLDRFPFAFELILTGGRIQHFGTDGADSLEAWTSAVGKWFSPLSCHQLLGPGLLRLGRLWLRSPSHTALAPGLWLAGFGLLRGDHLFLCPAPGPGPPAPEDMVHLRRLQEISVVSAADTPEKKEHLVLVETGRTLYLQAEGRLDFSAWSAAIGGAAGGGGTGLQEQQMSRGDIPIIVDACISFVTQHGLRLEGVYRKGGARARSLRLLAEFRRDARSVKLRPGEHFVEDVTDTLKRFFRELDDPVTSARLLPRWREAAELPQKHQRLEKYKEVIGSLPRVNRRTLATLIGHLYRVQKCAALNQMCTRNLALLFAPSIFQTDGRGEHEVRVLQELIDGYISVFDIDPDQVAQIDLEVSLITTWKDVQLSQAGDLIMEVFIEQQLPDNCVTLKVSPTLTAEELTNQVLEIRGTAAGTDLWVTFEIREHGELERPLHPKERVLEQALQWCQLPEPCSASLLLRKVSLAQAGCLFTGIRRESPRVGLLRCREEPPRLLGNRFQERFFLLRGRCLLLLKEKKSSKPEREWPLEGAKVYLGIRKKFKPPTPWGFTLILEKMHLQLSCTDEDEMWDWTTSILKAQYDDQQPVVLRRRSSSDLARQKFGTMPLLPIRGDDSGATLLSANQTLPMKSSQGSVEEQEELEEPVYEEPVYEEVGAFPELTEDPFASFSTRREQTAKPETPLASQRSFDQPFLPKAGPLGWEERRPEPPPGPPSKSSPQAQGSLEEQLLQELSSLILRKGEATVGLGNPSQPSSPQPPSPSGLATQTPGFSTPAPCTSSPPPGQPLT", "length": 1532, "header": "tr|F1RM54-1|A0A480KQN9_PIG Computationally mapped isoform of Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 OS=Sus scrofa OX=9823 GN=ARAP3 PE=4 SV=2 CANONICAL=A0A480KQN9-1" }, "locus": { "chromosome": "2", "start_pos": 143325885, "end_pos": 143304640, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015728.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015728.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015313.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015313.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 186, "start_aa": "Thr", "end_pos": 186, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr186", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 585, "start_aa": "Thr", "end_pos": 585, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr585", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 744, "start_aa": "Thr", "end_pos": 744, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr744", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RM54", "url": "https://www.uniprot.org/uniprotkb/F1RM54" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511744", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511744", "resource": "KEGG Pathway" }, { "id": "R-SSC-8980692", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "resource": "Reactome", "description": "RHOA GTPase cycle" }, { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" }, { "id": "R-SSC-9013423", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "resource": "Reactome", "description": "RAC3 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JUX2-1", "protein_name": "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3", "gene_name": "Arap3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAPQDLDIAVWLAAVHLEQYADTFRRHGLATAGAAQRLGHEELRHLGISATGHRKRILRLLQSGSAEGFLDSQLDSTMEPTPSPAPDAQPSKPVPKPRTVFGLSNPANAQKPGLNPIFWNPEVSRNSECTQRSPPVLPSSSEQPSALNTMEMMPNAIYFGLDLRGRAQAAQDLTPDSSQATVPTPAFRPTTGTVHIMDPGCLYYGVQPVGVPGVPDRRDGRGVCQERAEHSRQDQETREDAGYASLELPGDSILSLPTQDAETSDDLISPYASFSSTADRPVPLLSGWLDKLSPQGNYVFQRRFVQFNGRSLMYFGSDKDPFPKGVIPLTAIEMTRSSKDNKFQVITGQRVFVFRTESEAQRDIWCSTLQSCLKEQRLLGHPRPPHPPRPLRTGMLELRGHKAKVFAALIPGELALYKSEQAFSLGIGICFIELQGCSVRETKSRSFDLLTPHRCFSFTAESGGARQSWAVALQEAVTETLSDYEVAEKVWSNPANRHCADCRASRPDWAAVNLGVVICKQCAGQHRALGSGISKVQSLKLDTSVWTNEIVQLFIVLGNDRANCFWAGALPPGEGLHPDAAPGPRGEFISRKYKLGLYRKPHPRHPDHSQLLQALCAAMVGPNLLKNMTQLLCVEASEGEEPLSPSALNGSLLSLLPSDSSPGVYNEVVVPATYRGFLYCGPISNKAGAPPLRRGRDAPPRLWCVLGAALEMFASESSSEPLSLLQPQDVVCLGISPPPADSGDLDRFPFSFELILTGGRIQHFATDGADSLEAWISAVGKWFSPLSCHQLLGPGLLRMGRLWLRSPSHAGLAPGLWLSGFGLLRGDHLFLCPAPGPGPPAPEDMVHLRRLQEISVVSAADTPDKKEHLVLVETGRTLYLQGEGRLDFAAWNTAIGGAAGGGGTGLQEQQMSRGDIPIIVDACISFVTQHGLRLEGVYRKGGARARSLRLLAEFRRDARSVKLRPREHFVEDVTDTLKRFFRELDDPVTSARLLPRWREAAELPQKNQRLEKYKEVISCLPRVNRRTLATLIGHLYRVQKCAALNQMCTRNLALLFAPSVFQTDGRGEHEVRVLQELIDGYISVFDIDSDQAAQIDLEVSLITTWKDVQLSQAGDLIMEVYIEQQLPDNCVTLKVSPTLTAEELTNQVLEMRGAASGTDLWVTFEILDHGELERPLHPKEKVLEQALQWCQLPEPCSASLLLRKVSMAHAGCLFTGVRRESPRVGLLRCREEPPRLLGSRFQERFFLVRGRCLLLLKEKKSSKPEREWSLEGAKVYLGIRKKLKPPTLWGFTLILEKMHLCLSCTDEEEMWDWTTSILKAQHDDQQSVVLRRHSSSDLARQKFGTMPLLPIRGDDSGATLLSANQTLRRLHNRRTLSMFFPMKSSQGSVEEQDELEEPVYEEPVYEEVGAFPELTKDMTSTWEWSTKSDTPLTSQRSFDQTPLTKASMLVQEERIPEPPPGPPSKSSPQARGSLEEQLLQELNNLILRKGEPATCPESPSQPTSPQSPSPTSLPTQTPSLPTQIPCASNPPSSQPLT", "length": 1538 }, "evidence": [ { "id": "A0A480KQN9", "url": "https://omabrowser.org/oma/group/A0A480KQN9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0YIJ2-1", "protein_name": "ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3", "gene_name": "ARAP3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSSPCTPDSDIADWLATIHLERYRDLFKQHGFHLARDVAALDNKQLQQLGITATGHRKRILNLAEKTRLLGDPHPRAPQMGEDATKAEPGVAADAFGMQKCNAVPRQVMLLQKDLDPPLVRPVPKPRTVFYRPKLEQGSAATPAAHSQDRDGTAGAFVVLEGFVPGESSTDLESPGATMGTGTSRLGAQEEAQLPAVPDHGETQETPEKPCLCVPSVPPRLRHRVPVAELSAVGATVRPPSVPGVGQGRMEMVSNVIYEGFKQPLAPVEDSGQEDSPRGQALTQDPSPQELTQLAEKPNRASWPGGGLPPIPQRPASKPEFSEPPISPYSETTFGNTVPAREQKGTDVPSGQSYEAVTELEQETQRTSSEYSSEGRSEDEETRTRLIERIVQNDTEGYSTVDAPRAKGTPFSLPPHLYPDEVLDDLTISPYASYTSLSEPRPAMLSGWLDKLSPQGNYVFQRRYVRFDGKNLMYFSSEKEPYPKGVIPLPVIEMVRSTKDNKFQVVTSHRIFVFRAENEAQRNEWCSTLQQKVMDQHLVGTRPRPLNTAHCQKSGTLELKGQKSKVFAVLSLPEMWLYKSEQFFKMGIGICMIEMRGSTIREAKNRTFELITPSKIFSFVAESEREKREWMEALQEAIAETLYDYEVAEKIWSNKANRYCADCWAHSPDWASINLCVVICKQCAGQHRSLGSNISKVQSLKLDTSVWSNEIVQLFIVLGNDRANRFWAARIPATEVLHPDASTEQRRDFISRKYRDGRYRLPHPHYASHEDVLQALCTAVAGPSLLKTILQFFSAAEAGLAADPTAPDITPVAEPWWDLESKRNHAGVPGPEGVYNEITQPVAHSGYLHRSMAHPRLPGAKKSRDDFQRVWCSLERALLIFETEKCTEPLSHIQSGDLLSLGVSRAQPISSPGPTERFHFILELFLTGEKVQQLGADSADTLQAWASAIGKWFTPVSCHCLLGYEFQRVGQLRYKCMLNPERWQRAFFILQKAHLFICPAEEDGAEDSINLRRLQELSLVPPAEMPEKKEMLVLVEMGRTFYLQGLSRADTAAWYADIQASAGGRGNALRDQQLSRGDIPIIVDSCIAFITQYGLRHEGIYRKNGAKSRIKVLMEEFRRDARNVKLRISDNFIEDVTDVLKRFFRELEDPVFTLELHPQWKEAAAISSKPQRLERYKELIHRLPRLNRKTLAALIGHLYRVQKCADLNQMSTKNLSLLFAPSLFQTDGKGEHEVKVMEDLIDNYVTIFNIDEDQVSQMDLENSLITTWKDTQLSQAGDLIIEVYLEQKLPDCCVTLKVSPTMTAEELTNQVLEMRNVAASLDIWLTFEVLENGELERPLHPKEKVLEQALQWCKLPEPSAAYLLVRKVPIGEGSCLFTGAKRESPKCGLLKCREEPPKLLGNKFHERYFVIRDRQLLLLKEKRSAKPEREWPLDVAKVYMGIRKKLKPPAPWGFTLSMDKQQLYLVCTGQAELWDWITSILKAQHDDQRPVIMRRRSSSDLAKQKFGTMPLVPLHGDSTDATMLSANQTLRRLHTRRTLSMFFPMKVHQDSLEEQQEKEVDTEPVYEEVGNFPELATLELQRGLLADPSPVPTMDRSQKPSSSPEQPPAPVLRSSLPPSPAQRLPAPSVTKAVSLERGLNLECDKAPSCGLRATLTASLERNLEPPTVLARDQEQTAVLGHSSSPETSISTKKRSAQPSSPISDKLIQELSSIILKKSDGQTQGTGTGTGSGQPVT", "length": 1736 }, "evidence": [ { "id": "A0A480KQN9", "url": "https://omabrowser.org/oma/group/A0A480KQN9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AC58H7L2-1", "protein_name": "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 isoform X1", "gene_name": "arap3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MHTMATIGPCSDAEDLLASIHLERYLDHFRQAGFLLARDFCHVDNAALNRVGVAATGHRKRILKLVEHIQLICQHQSKEPSLDRCNSESAIHDVTPVKAKPLSPSKPPGTTFQALRNSSAPNLCAQVKRSFSERSTSVVKPVPKPRTVFHKLRGDKFSLATQHEHRKSSQDPVVIDSSSLSSSTDTVKTATESKKGHLEPSLSCTALSPESEGPLPPVPPRLNRGIPPSTFRRMSGQERLSTPPLCTPPDSPSSYQCSPFTNTPGSPPSPPCSGLEMVSNEIYCGTLPDTPHVFWSRSVPVPPPRQEPSPSTENHSTLEKSNSSESSKRTSASAEEDDDMINPYCETVFHSKRQYQHSEVERSESKEKTSNKEDKLRDHGHHNHSWLKRLDSPGYCTVGESSHSFSLPHNLCSSEADEDIISPYASFTSLSERAAPILSGWLDKLSPQGYEPPPGLLLLISSRLCISFSGFSFCFLSVLYGRNYVFQKRYVKFDGKNLMYFGSEKDAYPKGVIPLAAIQMARLAKDNKFEIVTSHRTFVFRADNDVQRSKWCSTLQERVKEQLVFGRPRFGPGSHCQKSGFLELKGTKSKIYTAIIMEQIWLYKSEQCFKNGIGITVIEARGATIRDGKGKSFDLITPYKTFSFTAETDREKRDWMEALQESIAETLSDYEVAEKIWSNRSNKICADCKAINPDWASINLCVVICKNCAGQHRGLGTMVSKVQSLKLDTSVWSNEIVQLFIMLGNDRANEFWAARLPVSEELDCDATPEQRREFISHKYKEGRYRHPHPSFSSQEELLKALCTAVTEQNLLKTVTQIFAEAEAARLADANGNDKRVSPHYSYTQSADSCVYDEIMQPILYSGFLYKSGSLNKGTLSRRTRDADFQKYWCSVEKSILFYESDRCHEPSMKIDVKDIICLGVSRPDSSNNSGFIDKFRYTFELYLMSDKLVQFGLETPDALHSWARAIGKATTPLSCHCLLAREFERVGVLRYKAMLDPQQWKEGFFVLQKSNLFICPGNDGAAEDIINLKRLQELSIASEMENHEKKDILVLVEKGRTLHLQGTGRTDFSLWYADIQKAAGGKGNTLKDQQLSRNDIPIIVDSCIAFITQYGLGHEGIYRKNGAKSRIKLLMEEFRKDARNVKLRIGDNFIEDVTDVLKRFFREIDDPIFMADLHPFWKEAAKIPLKTQRLDRYKELIRGLPRVNRTTLAALISHLYRVQKCADLNQMCTKNLSLLFAPSLFQTDGKGEHEVKIIEDLIDNYLYIFDVDEEHQTQIDLEISLITTWRDTQLSQAGDLIIEVYLEEKIPDCCITLKVSPTMCAEELTNQVLYMRNIPAGEKDVWMTFEAIEDGELERPLHPKEKVLEQALQWCKMADPSSAYLVVKKVPRGEAIDIFTAYKSEIVKSGVLKCREEPPKLLQGNKFQERSFQIKDHKLLLMKDKKSNKPEKEWQLKTLKIYMGIRKKLKPPTKWGLTVLLDKQQLYLSCSCETELWDWMTNLLKAQNDDLRPPVMRRHSSSDISKQKFGTMPLVPIRGEESNTNSTMLSANQTLRKLHTRRALSMFFPMKIQQQDSFEERIEIPEPLYEEVGDFGLQVLKSLETSFLSSGHAETQEVPMRPISLGQRKTTSLDRMLGSRPFVSSGESLDALSHDGSSDSLPIPGRHRAHRSCSPQQELLLQELSTMFCKKPESDEPESLT", "length": 1697 }, "evidence": [ { "id": "A0A480KQN9", "url": "https://omabrowser.org/oma/group/A0A480KQN9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8R5G7-1", "protein_name": "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3", "gene_name": "Arap3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAPQDLDIAVWLALVHLEQYADTFRRHGLATAGAAQHLGHEELRHLGISATGHRKRILRLLRAGSAEGFLDSHLDNTMEPTPSPAPDAQPPKPVPKPRTVFGLSNPATAQRPGLSPIFWDPEVSRNSECTQRSSPLLPSSSEQPSVPNTMEMMPNAIYFGLDLRGRAQAAQDVTPDSSQATVPTPAFRPTTGTVHIMDPGCLYYGVQPVGIPGASDRRDGRGVCQERAEHRQDLETREDAGYASLELPGDSILSLPTQDAETSDDLISPYASFSSTADRPVPLLSGWLDKLSPQGNYVFQRRFVQFNGRSLMYFGSDKDPFPKGVIPLTAIEMTRSSKDNKFQVITGQRVFVFRTESEAQRDLWCSTLQSCLKEQRLLGHPRPPHPPRPLRTGTLELRGHKAKVFAALIPGELALYKSEQAFSLGIGICFIELQGCSVRETKSRSFDLLTPHRCFSFTAESGGARQSWAAALQEAVTETLSDYEVAEKVWSNPANRHCADCRASRPDWAAVNLGVVICKQCAGQHRALGSGISKVQSLKLDTSVWSNEIVQLFIVLGNDRANCFWAGALPPGEGLHPDSAPGPRGEFISRKYKLGLFRKPHPRHPDHSQLLQALCAAMAGPNLLKNMAQLLCVETSEGEEPLSPSALNGSLLSLLPSDSPGVYNEVVVPATYRGFLYCGSISNKAGAPPLRRGRDAPPRLWCVLGAALEMFASESSPEPLSLLQPQDIVCLGVSPPPADPGDLDRFPFSFELILTGGRIQHFATDGADSLEAWISAVGKWFSPLSCHQLLGPGLLRMGRLWLRSPSHAGLAPGLWLSGFGLLRGDHLFLCPAPGPGPPAPEDMVHLRRLQEISVVSAADTPDKKEHLVLVETGRTLYLQGEGRLDFAAWNTAIGGAAGGGGTGLQEQQMSRGDIPIIVDACISFVTQHGLRLEGVYRKGGARARSLRLLAEFRRDARSVKLRPREHFVEDVTDTLKRFFRELDDPVTSARLLPRWREAAELSQKNQRLEKYKEVISCLPRVNRRTLATLIGHLYRVQKCASLNQMCTRNLALLFAPSVFQTDGRGEHEVRVLQELIDGYISVFDIDSDQAAQIDLEVSLITTWKDVQLSQAGDLIMEVYIEQQLPDNCVTLKVSPTLTAEELTNQVLEMRGAASGTDLWVTFEILEHGELERPLHPKEKVLEQALQWCQLPEPCSASLLLRKVSMAHAGCLFTGVRRESPRVGLLRCREEPPRLLGNRFQERFFLVRGRCLLLLKEKKSSKPEREWSLEGAKVYLGIRKKLKPPTLWGFTLILEKMHLCLSCMDEEEMWDWTTSILKAQHDDQQSVVLRRRSSSDLARQKFGTMPLLPIRGDDSGATLLSANQTLRRLHNRRTLSMFFPMKSPQGSVEEQDELEEPVYEEPVYEEVGAFPELTKDTTFSSTWEWSAKSDPSLTSQRSFDQPPLSKASMLGHEERIPDPPPGPPSKSSSQARGSLEEQLLQELNNLILRKGEPASCPESSSQPTSPQAPSPTSLPTPTPSLPTQPPCTSNPPSSQPLT", "length": 1538 }, "evidence": [ { "id": "A0A480KQN9", "url": "https://omabrowser.org/oma/group/A0A480KQN9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WWN8-1", "protein_name": "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3", "gene_name": "ARAP3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAPQDLDIAVWLATVHLEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQTGTEEGSLDPKSDSAMEPSPSPAPQAQPPKPVPKPRTVFGGLSGPATTQRPGLSPALGGPGVSRSPEPSPRPPPLPTSSSEQSSALNTVEMMPNSIYFGLDSRGRAQAAQDKAPDSSQISAPTPALRPTTGTVHIMDPGCLYYGVQPVGTPGAPDRRESRGVCQGRAEHRLSRQDLEAREDAGYASLELPGDSTLLSPTLETEETSDDLISPYASFSFTADRLTPLLSGWLDKLSPQGNYVFQRRFVQFNGRSLMYFGSDKDPFPKGVIPLTAIEMTRSSKDNKFQVITGQRVFVFRTESEAQRDMWCSTLQSCLKEQRLLGHPRPPQPPRPLRTGMLELRGHKAKVFAALSPGELALYKSEQAFSLGIGICFIELQGCSVRETKSRSFDLLTPHRCFSFTAESGGARQSWAAALQEAVTETLSDYEVAEKIWSNRANRQCADCGSSRPDWAAVNLGVVICKQCAGQHRALGSGISKVQSLKLDTSVWSNEIVQLFIVLGNDRANRFWAGTLPPGEGLHPDATPGPRGEFISRKYRLGLFRKPHPQYPDHSQLLQALCAAVARPNLLKNMTQLLCVEAFEGEEPWFPPAPDGSCPGLLPSDPSPGVYNEVVVRATYSGFLYCSPVSNKAGPSPPRRGRDAPPRLWCVLGAALEMFASENSPEPLSLIQPQDIVCLGVSPPPTDPGDRFPFSFELILAGGRIQHFGTDGADSLEAWTSAVGKWFSPLSCHQLLGPGLLRLGRLWLRSPSHTAPAPGLWLSGFGLLRGDHLFLCSAPGPGPPAPEDMVHLRRLQEISVVSAADTPDKKEHLVLVETGRTLYLQGEGRLDFTAWNAAIGGAAGGGGTGLQEQQMSRGDIPIIVDACISFVTQHGLRLEGVYRKGGARARSLRLLAEFRRDARSVKLRPGEHFVEDVTDTLKRFFRELDDPVTSARLLPRWREAAELPQKNQRLEKYKDVIGCLPRVNRRTLATLIGHLYRVQKCAALNQMCTRNLALLFAPSVFQTDGRGEHEVRVLQELIDGYISVFDIDSDQVAQIDLEVSLITTWKDVQLSQAGDLIMEVYIEQQLPDNCVTLKVSPTLTAEELTNQVLEMRGTAAGMDLWVTFEIREHGELERPLHPKEKVLEQALQWCQLPEPCSASLLLKKVPLAQAGCLFTGIRRESPRVGLLRCREEPPRLLGSRFQERFFLLRGRCLLLLKEKKSSKPEREWPLEGAKVYLGIRKKLKPPTPWGFTLILEKMHLYLSCTDEDEMWDWTTSILKAQHDDQQPVVLRRHSSSDLARQKFGTMPLLPIRGDDSGATLLSANQTLRRLHNRRTLSMFFPMKSSQGSVEEQEELEEPVYEEPVYEEVGAFPELIQDTSTSFSTTREWTVKPENPLTSQKSLDQPFLSKSSTLGQEERPPEPPPGPPSKSSPQARGSLEEQLLQELSSLILRKGETTAGLGSPSQPSSPQSPSPTGLPTQTPGFPTQPPCTSSPPSSQPLT", "length": 1544 }, "evidence": [ { "id": "A0A480KQN9", "url": "https://omabrowser.org/oma/group/A0A480KQN9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A480KQN9", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9" } ], "pmid": "" }, { "name": "phosphatidylinositol-3,4,5-trisphosphate binding", "id": "GO:0005547", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005547", "evidence": [ { "database": "UniProtKB", "id": "A0A480KQN9", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A480KQN9", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9" } ], "pmid": "" }, { "name": "phosphatidylinositol-3,4-bisphosphate binding", "id": "GO:0043325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043325", "evidence": [ { "database": "UniProtKB", "id": "A0A480KQN9", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A480KQN9", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A480KQN9", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A480KQN9", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9" } ], "pmid": "" }, { "name": "lamellipodium", "id": "GO:0030027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030027", "evidence": [ { "database": "UniProtKB", "id": "A0A480KQN9", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9" } ], "pmid": "" }, { "name": "ruffle", "id": "GO:0001726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001726", "evidence": [ { "database": "UniProtKB", "id": "A0A480KQN9", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A480KQN9", "url": "https://www.uniprot.org/uniprotkb/A0A480KQN9" } ], "pmid": "" }, { "name": "regulation of actin cytoskeleton organization", "id": "GO:0032956", "url": 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480L8N8-1", "uniprot_ac": "A0A480L8N8", "uniprot_id": "A0A480L8N8_PIG", "mass": { "chemical_mass": 34098.0, "monoisotopic_mass": 34098.0 }, "refseq": {}, "gene_names": [ { "name": "KAZALD1", "type": "recommended", "evidence": [ { "id": "A0A480L8N8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8" } ] } ], "protein_names": [ { "name": "Kazal type serine peptidase inhibitor domain 1", "type": "synonym", "evidence": [ { "id": "A0A480L8N8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480L8N8", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KAZALD1", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8", "locus": { "chromosome": "14", "start_pos": 112153961, "end_pos": 112142745, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022429", "url": "https://www.ensembl.org/id/ENSSSCG00000022429" } ] } } ], "crossref": [ { "id": "ENSSSCG00000022429", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022429", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00104", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00104", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", 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Classification" ] }, { "id": "TWNITGQ", "url": "https://omabrowser.org/oma/group/TWNITGQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14186", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14186", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14186:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14186:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00219", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00219", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07648", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07648", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A480L8N8", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480L8N8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRVLAGLPLIMPQSPAAALALPLLLLLVVVVVRPPPQTGARPSPGPDYLRRGWLRLLAEGEGCAPCRPEECATPRGCLAGQVHDACGCCWECANLEGQLCDLDPSAHFYGSCGEQLECRLDTGGDLSRGEVPEPLCACRSQRPLCGSDGRTYAQICRLQEAARARPEANLTVAHPGPCESGPQIVSRPYDIWNVTGQDVIFGCEVFAYPMASIEWRKDGLDIQLPGDDPHISVQFRGGPQRFEVTGWLQIQAVRPSDEGTYRCLARNALGQVEAPASLTVLTPDQLNSTGIPQLSSLHLLPEEEAESEEGEDYY", "length": 315, "header": "tr|A0A480L8N8-1|A0A480L8N8_PIG Isoform 1 of Kazal type serine peptidase inhibitor domain 1 OS=Sus scrofa OX=9823 GN=KAZALD1 PE=4 SV=1 CANONICAL=A0A480L8N8-1" }, "isoforms": [ { "isoform_ac": "A0A480L8N8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8/entry#A0A480L8N8-1", "sequence": { "sequence": "MPRVLAGLPLIMPQSPAAALALPLLLLLVVVVVRPPPQTGARPSPGPDYLRRGWLRLLAEGEGCAPCRPEECATPRGCLAGQVHDACGCCWECANLEGQLCDLDPSAHFYGSCGEQLECRLDTGGDLSRGEVPEPLCACRSQRPLCGSDGRTYAQICRLQEAARARPEANLTVAHPGPCESGPQIVSRPYDIWNVTGQDVIFGCEVFAYPMASIEWRKDGLDIQLPGDDPHISVQFRGGPQRFEVTGWLQIQAVRPSDEGTYRCLARNALGQVEAPASLTVLTPDQLNSTGIPQLSSLHLLPEEEAESEEGEDYY", "length": 315, "header": "tr|A0A480L8N8-1|A0A480L8N8_PIG Isoform 1 of Kazal type serine peptidase inhibitor domain 1 OS=Sus scrofa OX=9823 GN=KAZALD1 PE=4 SV=1 CANONICAL=A0A480L8N8-1" }, "locus": { "chromosome": "14", "start_pos": 112145636, "end_pos": 112143301, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051924.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051924.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039592.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039592.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480L8N8", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "F1NLB5-1", "protein_name": "Kazal type serine peptidase inhibitor domain 1", "gene_name": "KAZALD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPVVLSSSCLLLYLLTLPWACLQPGRAFPSSAEYLQRGWQRLLEEGEGCAECRPEECPVPRGCLAGTVRDACDCCWECANLEGQICDLDNTNHFYGKCGEHLECQLEAGDLQRGEVPEPQCACISHQALCGSDGRTYPQICRFLESARAHPDANLTVAHEGPCEAEPQITSPPYDAWNVTGQDVIFGCEVFAYPMASIEWRKDGTEMLLPGDDPHISVQFRGGPQKYEVTGWLQIQGVRVTDEGTYRCFARNRVGAVVAVASLTVLTPDQLNLTGLSLLEPRAVPEDYGDSEEEYY", "length": 296 }, "evidence": [ { "id": "A0A480L8N8", "url": "https://omabrowser.org/oma/group/A0A480L8N8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q3ZAU4-1", "protein_name": "Kazal-type serine peptidase inhibitor domain 1", "gene_name": "Kazald1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRVFTGLPANHAAPSLALPLVLLLLMVSARPSTGPDYLRRGWLRLLAEGEGCAPCRPEECAAPRGCLAGRVRDACGCCWECANLEGQLCDLDPSANFYGRCGEQLECRLDAGGDLSRGEVPEPLCVCRSQRPLCGSDGRTYAQVCRLQEVARARPDANLTVVHPGPCESEPQILSQPHNIWNVTGQDVIFGCEVFAYPMASIEWRKDGLDIQLPGDDPHISVQFRGGPQKFEVTGWLQIQALRPSDEGTYRCLARNALGQAEASATLTVLTPDQLNATGFSQLQSQGLIPEEEAEDEELEDYY", "length": 304 }, "evidence": [ { "id": "A0A480L8N8", "url": "https://omabrowser.org/oma/group/A0A480L8N8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BJ66-1", "protein_name": "Kazal-type serine protease inhibitor domain-containing protein 1", "gene_name": "Kazald1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRVFTGLPANYAAPTLALSLLLPLLLVVWTQLPVSARPSTGPDYLRRGWLRLLAEGEGCAPCRPEECAAPRGCLAGRVRDACGCCWECANLEGQLCDLDPSANFYGRCGEQLECRLDAGGDLSRGEVPEPLCVCRSQRPLCGSDGRTYAQICRLQEAARARLDANLTVVHPGPCESEPQILSQPHNIWNVTGQDVIFGCEVFAYPMASIEWRKDGLDIQLPGDDPHISVQFRGGPQKFEVTGWLQIQALRPSDEGTYRCLARNALGQAEASATLTVLTPEQLNATGFSQLQSRSLFPEEEEEAESEELGDYY", "length": 313 }, "evidence": [ { "id": "A0A480L8N8", "url": "https://omabrowser.org/oma/group/A0A480L8N8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96I82-1", "protein_name": "Kazal-type serine protease inhibitor domain-containing protein 1", "gene_name": "KAZALD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLPPPRPAAALALPVLLLLLVVLTPPPTGARPSPGPDYLRRGWMRLLAEGEGCAPCRPEECAAPRGCLAGRVRDACGCCWECANLEGQLCDLDPSAHFYGHCGEQLECRLDTGGDLSRGEVPEPLCACRSQSPLCGSDGHTYSQICRLQEAARARPDANLTVAHPGPCESGPQIVSHPYDTWNVTGQDVIFGCEVFAYPMASIEWRKDGLDIQLPGDDPHISVQFRGGPQRFEVTGWLQIQAVRPSDEGTYRCLGRNALGQVEAPASLTVLTPDQLNSTGIPQLRSLNLVPEEEAESEENDDYY", "length": 304 }, "evidence": [ { "id": "A0A480L8N8", "url": "https://omabrowser.org/oma/group/A0A480L8N8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A480L8N8", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8" } ], "pmid": "" }, { "name": "interstitial matrix", "id": "GO:0005614", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005614", "evidence": [ { "database": "UniProtKB", "id": "A0A480L8N8", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of cell growth", "id": "GO:0001558", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001558", "evidence": [ { "database": "UniProtKB", "id": "A0A480L8N8", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8" } ], "pmid": "" }, { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "A0A480L8N8", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "insulin-like growth factor binding", "id": "GO:0005520", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005520", "evidence": [ { "database": "UniProtKB", "id": "A0A480L8N8", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8" } ], "pmid": "" }, { "name": "receptor ligand activity", "id": "GO:0048018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048018", "evidence": [ { "database": "UniProtKB", "id": "A0A480L8N8", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" }, { "start_pos": 194, "end_pos": 196, "annotation": "n_glycosylation_sequon" }, { "start_pos": 288, "end_pos": 290, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480L8N8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8" }, { "id": "PS51323", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51323" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IGFBP N-terminal", "eco_id": "ECO_0000259", "start_pos": 60, "end_pos": 140, "start_aa": "Glu", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A480L8N8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 183, "end_pos": 280, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A480L8N8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480L8N8" }, { "id": "PS51465", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51465" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Kazal-like", "eco_id": "ECO_0000259", "start_pos": 131, "end_pos": 181, "start_aa": "Glu", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 170, "end_pos": 172 }, { "start_pos": 194, "end_pos": 196 }, { "start_pos": 288, "end_pos": 290 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480L8X4-1", "uniprot_ac": "A0A480L8X4", "uniprot_id": "A0A480L8X4_PIG", "mass": { "chemical_mass": 74454.0, "monoisotopic_mass": 74454.0 }, "refseq": { "ac": "XP_005655611", "name": "tastin isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655611" }, "gene_names": [ { "name": "TROAP", "type": "recommended", "evidence": [ { "id": "A0A480L8X4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480L8X4" } ] }, { "name": "TROAP", "type": "synonym", "evidence": [ { "id": "XP_005655611", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655611" } ] } ], "protein_names": [ { "name": "Trophinin associated protein", "type": "synonym", "evidence": [ { "id": "A0A480L8X4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480L8X4/entry#names_and_taxonomy" } ] }, { "name": "tastin isoform X4", "type": "synonym", "evidence": [ { "id": "XP_005655611", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655611" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480L8X4", "url": "https://www.uniprot.org/uniprotkb/A0A480L8X4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TROAP", "url": "https://www.uniprot.org/uniprotkb/A0A480L8X4", "locus": { "chromosome": "5", "start_pos": 15307679, "end_pos": 15300687, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023176", "url": "https://www.ensembl.org/id/ENSSSCG00000023176" } ] } } ], "crossref": [ { "id": "ENSSSCG00000023176", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023176", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100511692", "url": "https://www.ncbi.nlm.nih.gov/gene/100511692", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026133", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026133", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A480L8X4", "url": "https://www.orthodb.org/?gene=A0A480L8X4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15289", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15289", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15289:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15289:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_005655611", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655611", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480L8X4", "url": "https://www.uniprot.org/uniprotkb/A0A480L8X4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480L8X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480L8X4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTLQATKDPLLRGVSPTPSKIPVRSQRRPPLPTVKPYALGQENQDPRRLVQKVSIQRPLVDSAGPRPKATRQTDPSEKLVGSTQLRNPLKELRPSPGGQNVDPRPPTQTEASGTVEFVADPAALATILSGEGVKSCRLGRQPSLAQRVLVRGSQGGTIRRGQDARASAYLAPRTPIHRLDPARASCFSRLEGPGPRGRTLCPQRLEALELRRETGGGLRTSVSQASGLLAKTPVQPASSLPEGEHEIVTHSDEGGGGPLGLAQRVPLKETRVPLKETREIPHTKDGRDSCPMPSPGRVVPPAVARPSPFGRAQRVPSPGPSVPTSYSVLRRLAFRPKTQFTPLPSASRVQQARWLSGLSPQPCPEEPAVPWEQIAVRLFDQESCMRLQEGPGKPPPVSTPCGPHPSRTPSLQEIKMQRISILQQLLRQEVEGLAGGQCAPLNGGSSLDMAELQPLLAEISRTLNAPESNNSGAFQPPRPLHPSAMPEPCLLEACGEEPEPCPEAEPGPPESCPRREPGISEPSTQEQLEVLEPCPPGAPRPLQACPLGQTRPAEPSPKVETERAPQSPESSLQPSCGQRAPATTSLTFSSQRPLCASPPIHSLQSLKPPTGQADPHNLAPRTLALRQRLRACLSAIHCFHEARLDDECAFYTSRAPPSGLTRVCPNPVATLLEWQDALSFIPVSSAAPQDSPS", "length": 694, "header": "tr|A0A480L8X4-1|A0A480L8X4_PIG Isoform 1 of Trophinin associated protein OS=Sus scrofa OX=9823 GN=TROAP PE=4 SV=1 CANONICAL=A0A480L8X4-1" }, "isoforms": [ { "isoform_ac": "A0A480L8X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480L8X4/entry#A0A480L8X4-1", "sequence": { "sequence": "MTTLQATKDPLLRGVSPTPSKIPVRSQRRPPLPTVKPYALGQENQDPRRLVQKVSIQRPLVDSAGPRPKATRQTDPSEKLVGSTQLRNPLKELRPSPGGQNVDPRPPTQTEASGTVEFVADPAALATILSGEGVKSCRLGRQPSLAQRVLVRGSQGGTIRRGQDARASAYLAPRTPIHRLDPARASCFSRLEGPGPRGRTLCPQRLEALELRRETGGGLRTSVSQASGLLAKTPVQPASSLPEGEHEIVTHSDEGGGGPLGLAQRVPLKETRVPLKETREIPHTKDGRDSCPMPSPGRVVPPAVARPSPFGRAQRVPSPGPSVPTSYSVLRRLAFRPKTQFTPLPSASRVQQARWLSGLSPQPCPEEPAVPWEQIAVRLFDQESCMRLQEGPGKPPPVSTPCGPHPSRTPSLQEIKMQRISILQQLLRQEVEGLAGGQCAPLNGGSSLDMAELQPLLAEISRTLNAPESNNSGAFQPPRPLHPSAMPEPCLLEACGEEPEPCPEAEPGPPESCPRREPGISEPSTQEQLEVLEPCPPGAPRPLQACPLGQTRPAEPSPKVETERAPQSPESSLQPSCGQRAPATTSLTFSSQRPLCASPPIHSLQSLKPPTGQADPHNLAPRTLALRQRLRACLSAIHCFHEARLDDECAFYTSRAPPSGLTRVCPNPVATLLEWQDALSFIPVSSAAPQDSPS", "length": 694, "header": "tr|A0A480L8X4-1|A0A480L8X4_PIG Isoform 1 of Trophinin associated protein OS=Sus scrofa OX=9823 GN=TROAP PE=4 SV=1 CANONICAL=A0A480L8X4-1" }, "locus": { "chromosome": "5", "start_pos": 15307565, "end_pos": 15301083, "strand": "-", "evidence": [ { "database": 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"Protein" ] }, { "id": "I3LU80", "url": "https://www.uniprot.org/uniprotkb/I3LU80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LU80-1", "url": "https://www.uniprot.org/uniprotkb/I3LU80-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCIGSRTVGNEVIAVDWKGLKDVDQINMDSTSSLHGSSLHRPSTEQTRTDFSWDGINLSMEDTTSILPKLKRNSNAYGIGALAKSSFSGISRSMKDHVTKPTAMGQGRVAHMIEWQGWGKAPAIQPQHSHEAVRRDTDAYSDLSDGEKEARFLAGVMEQFAISEATLMAWSSMDGEDMSVNSTQEPLGCNYSDNYQELMESQDALAQAPMDGWPHSYVSQGMYCLGSSDAWEASDQSLIASPATGSYLGPAFDDSQPSLHEMGPSQPASGYSAQEPPSFLGGDADWAPGVGGVDLARGPAEEEKRPLAPEEEEDAGCRDLESLSPREDPEVSTALSRKVSDVTSSGVQSFDEEEGEANN", "length": 360, "header": "tr|A0A480PUJ1-1|A0A480PUJ1_PIG Isoform 1 of Family with sequence similarity 131 member B OS=Sus scrofa OX=9823 GN=FAM131B PE=3 SV=1 CANONICAL=A0A480PUJ1-1" }, "isoforms": [ { "isoform_ac": "A0A480PUJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480PUJ1/entry#A0A480PUJ1-1", "sequence": { "sequence": 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"https://www.uniprot.org/uniprotkb/A0A480PUJ1/entry#I3LU80-1", "sequence": { "sequence": "MGCIGSRTVGNEVIAVDWKGLKDVDQINMDSTSSLHGSSLHRPSTELSMEDTTSILPKLKRNSNAYGIGALAKSSFSGISRSMKDHVTKPTAMGQGRVAHMIEWQGWGKAPAIQPQHSHEAVRRDTDAYSDLSDGEKEARFLAGVMEQFAISEATLMAWSSMDGEDMSVNSTQEPLGCNYSDNYQELMESQDALAQAPMDGWPHSYVSQGMYCLGSSDAWEASDQSLIASPATGSYLGPAFDDSQPSLHEMGPSQPASGYSAQEPPSFLGGDADWAPGVGGVDLARGPAEEEKRPLAPEEEEDAGCRDLESLSPREDPEVSTALSRKVSDVTSSGVQSFDEEEGEANN", "length": 348, "header": "tr|I3LU80-1|A0A480PUJ1_PIG Computationally mapped isoform of Family with sequence similarity 131 member B OS=Sus scrofa OX=9823 GN=FAM131B PE=3 SV=3 CANONICAL=A0A480PUJ1-1" }, "locus": { "chromosome": "18", "start_pos": 6899977, "end_pos": 6893509, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031482.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031482.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027679.3", "url": "https://www.ensembl.org/id/ENSSSCP00000027679.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LU80", "url": "https://www.uniprot.org/uniprotkb/I3LU80" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520650", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520650", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A480PUJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480PUJ1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A480PUJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480PUJ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 182, "end_pos": 184, "annotation": "n_glycosylation_sequon" }, { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" }, { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 182, "end_pos": 184 }, { "start_pos": 191, "end_pos": 193 }, { "start_pos": 58, "end_pos": 60 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480Q049-1", "uniprot_ac": "A0A480Q049", "uniprot_id": "A0A480Q049_PIG", "mass": { "chemical_mass": 81378.0, "monoisotopic_mass": 81378.0 }, "refseq": { "ac": "XP_020937085", "name": "melanoma-associated antigen D4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937085" }, "gene_names": [ { "name": "LOC100523107", "type": "recommended", "evidence": [ { "id": "A0A480Q049", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480Q049" } ] }, { "name": "LOC100523107", "type": "synonym", "evidence": [ { "id": "XP_020937085", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937085" } ] } ], "protein_names": [ { "name": "MAGE domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A480Q049", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480Q049/entry#names_and_taxonomy" } ] }, { "name": "melanoma-associated antigen D4", "type": "synonym", "evidence": [ { "id": "XP_020937085", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937085" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480Q049", "url": "https://www.uniprot.org/uniprotkb/A0A480Q049" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100523107", "url": "https://www.uniprot.org/uniprotkb/A0A480Q049", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000039860", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039860", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523107", "url": "https://www.ncbi.nlm.nih.gov/gene/100523107", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523107", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523107", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ssc:110255204", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255204", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AEPWTRM", "url": "https://omabrowser.org/oma/group/AEPWTRM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480Q049", "url": "https://www.orthodb.org/?gene=A0A480Q049", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01454", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01454", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020937085", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937085", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480Q049", "url": "https://www.uniprot.org/uniprotkb/A0A480Q049", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480Q049-1", "url": "https://www.uniprot.org/uniprotkb/A0A480Q049-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEGSYRMEPEGYSVEDMDEGSDEVEEEEMVEGNDYEEFGAFGGYGALTSFDIRILRAFGSLGPGFRILANEPWELENPMLARTLMEAFQLDSETLASEAAARAANVARAASSNRAARAAAAAARATYSQVVPNHSGATDQASAGDPQPMTYAAAAEARAATPERGLASPHSSQMLANSERAAPGAPAASSPQPQTSSQAQGAATEGPSTACAFPQAPGARDMDATRPKAAFLGQNDVFDFTQPAGVSGMAFPRPKRPAPAQEAAPEGPSGASGGAQAASAGEGAATRPKTTKSGKALAKTRWVEPQNVAAAAAAKAKMATSIPEPEGAAATSQQSAEPWARMGGKRTKKSKHLDDEYESSEEEREPPVVPPTWRASQPPPTMGRAQMAPRPPTAVRSQVPSRHVLCLPPRNVTLLQERANKLVKYLMIKDYKKIPIKRSDMLKDVIREYDEHFPEIIERATYTLEKKFGIHLKEIDKEEHLYILVCTRDSSARLLGKTKDTPRLSLLLVILGIIFMNGNRASEAVLWEALRKMGLRPGVKHPFLGDLRKLITEDFVKQKYLEYKKIPNSSPPEYEFLWGLRARHETSKMRVLRFIAQYQNRDPREWKAHFLEAVDDAFKTMDVDMAEEHARAQMRAQMNIGDEALIGRWSWDDIQVELLTWDEDGDFGDAWSRIPFAFWARYHQYILNSNRANRRATWRAGVSSGTNGPASTSMLDGPSTSSTIRTRNAARTSASFFSWIQ", "length": 742, "header": "tr|A0A480Q049-1|A0A480Q049_PIG Isoform 1 of MAGE domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100523107 PE=4 SV=1 CANONICAL=A0A480Q049-1" }, "isoforms": [ { "isoform_ac": "A0A480Q049-1", "url": "https://www.uniprot.org/uniprotkb/A0A480Q049/entry#A0A480Q049-1", "sequence": { "sequence": "MAEGSYRMEPEGYSVEDMDEGSDEVEEEEMVEGNDYEEFGAFGGYGALTSFDIRILRAFGSLGPGFRILANEPWELENPMLARTLMEAFQLDSETLASEAAARAANVARAASSNRAARAAAAAARATYSQVVPNHSGATDQASAGDPQPMTYAAAAEARAATPERGLASPHSSQMLANSERAAPGAPAASSPQPQTSSQAQGAATEGPSTACAFPQAPGARDMDATRPKAAFLGQNDVFDFTQPAGVSGMAFPRPKRPAPAQEAAPEGPSGASGGAQAASAGEGAATRPKTTKSGKALAKTRWVEPQNVAAAAAAKAKMATSIPEPEGAAATSQQSAEPWARMGGKRTKKSKHLDDEYESSEEEREPPVVPPTWRASQPPPTMGRAQMAPRPPTAVRSQVPSRHVLCLPPRNVTLLQERANKLVKYLMIKDYKKIPIKRSDMLKDVIREYDEHFPEIIERATYTLEKKFGIHLKEIDKEEHLYILVCTRDSSARLLGKTKDTPRLSLLLVILGIIFMNGNRASEAVLWEALRKMGLRPGVKHPFLGDLRKLITEDFVKQKYLEYKKIPNSSPPEYEFLWGLRARHETSKMRVLRFIAQYQNRDPREWKAHFLEAVDDAFKTMDVDMAEEHARAQMRAQMNIGDEALIGRWSWDDIQVELLTWDEDGDFGDAWSRIPFAFWARYHQYILNSNRANRRATWRAGVSSGTNGPASTSMLDGPSTSSTIRTRNAARTSASFFSWIQ", "length": 742, "header": "tr|A0A480Q049-1|A0A480Q049_PIG Isoform 1 of MAGE domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100523107 PE=4 SV=1 CANONICAL=A0A480Q049-1" }, "locus": { "chromosome": "AEMK02000254.1", "start_pos": 38143, "end_pos": 32089, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049605.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049605.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037711.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037711.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 382, "start_aa": "Thr", "end_pos": 382, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr382", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480Q049", "url": "https://www.uniprot.org/uniprotkb/A0A480Q049" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523107", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523107", "resource": "KEGG Pathway" }, { "id": "ssc:110255204", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255204", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MDL6-1", "protein_name": "MAGE domain-containing protein", "gene_name": "LOC112445144", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAEGSYRKESEGYNVEDMDEGSDEVGEEDMVEGNDYEEFGAFGGYGALTSFDIRILRAFGSLGPGFRILANEPWELENPVLARTLLEAFRMDPETLANETAARAANVARAAASNQAARAAATAARATYNQVVTNHHPVATHQASGGDTQPMTSAAQAPAATPETSVASPHSSRMLVNSEMAAPGAPARSPQPQTSSQAQEAAAEGPSTACAFPQASRASEMDATRPKTAFLGQNDAFDFSQPAGVSGMAFPRPKRPAPAQEAATEGPSVASRGTQAASAGEGAATRPKTTKSGKALAKTRWVEPQNVVAAAAAKAKMATSIPEPESAAATSQQSAEPWARMGGKRTKKSKHLDDEYESGEEEREPPAVPPTWRASQPLLTTARPQVAPRPSMALRSQVPSRHVLCLPPRNVTLLQERANKLVKYLMIKDYKKIPIKRSDMLKDVIREYDEHFPEIIERATYTLEKVGVGPGAALWSRSSREPLTKDTPRLSLLLVILGVIFMNGNRASEAVLWEALRKMGLRPGVRHPFLGDLRKLITEDFVKQKYLEYKKGPQLAAHPEYEFLWGLRACHETSKMRVLRFIAQVGRACVLAASSHTWFVSMPGWDDIQVELLTWDEDGDFGDAWSRIPFAFWARYHQYILNSNRANRRGTWRAGVSSGTNGAASASMLDGPSTSSTIRTQKRSRFAFWPDYHQYILNSNRANRRMLPGGLCQQSHQSAGQRQLMLDGPAPAPTHSGPRGETAARTSASFFSWISVRLEPHYTGPLGGWRWGGAGRISLAGRPGVSWGNE", "length": 790 }, "evidence": [ { "id": "A0A480Q049", "url": "https://omabrowser.org/oma/group/A0A480Q049/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { 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T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480QBH9", "url": "https://www.uniprot.org/uniprotkb/A0A480QBH9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "sensory perception of mechanical stimulus", "id": "GO:0050954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050954", "evidence": [ { "database": "UniProtKB", "id": "A0A480QBH9", "url": "https://www.uniprot.org/uniprotkb/A0A480QBH9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { 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{ "id": "XP_005653113", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653113", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480QF27", "url": "https://www.uniprot.org/uniprotkb/A0A480QF27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480QF27-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QF27-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7C8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7C8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7C8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7C8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFFQEQQKMNQSLEPVSFKDVAVDFTQEEWRQLDAEQKTTYRDVMLENYSHLVSVGCHIIKPEVITKLEQGEDPWIVEGEFLLQTYPEVWKVHDLIEGAPENEDKHPRQTLSINRTTLIEERGNVLGKTFTVETNPVPSRQISYKCDSCEKSLKSVSEYISSDGSYARMKPDECSACGKSLLHVKLEKTHQRDKPNEFNQNGEAYALNEEIYQNIHILEKPFEYIECQKAFQKDTVFVNHMEEKPYKWNESEIAFLQMSNLSVHQGAHMEMKPYECNACGKSFCKKSKFIIHQRTHTGEKPYECNQCGKSFCQKGTLTVHQRTHTGEKPYECNECGKTFYQKLHLIQHQRTHSGEKPYECSYCGKSFCQKTHLTQHQRTHSGERPYVCHDCGKTFSQKSALNDHQKIHTGVKLYKCNECGKCFCRKSTLTTHQRTHTGEKPYECNECGKFFSRLSYLTVHYRTHSGEKPYECNECGKTFYLNSALMRHQRVHTGEKPYECNECGKLFSQLSYLTIHHRTHSGVKPYECNECGKTFYQNSALCRHRRIHKGEKPYECYICGKFFSQMSYLTIHHRIHSGEKPYECNECGKTFCQNSALNRHQRTHTGEKAYECYECGKFFSQMSYLTIHHRIHSGEKPFECNECGKAFSRMSYLTVHYRTHSGEKPYECNECGKKFYHKSAFNSHQRIHRRGNVNVIDVGRLL", "length": 702, "header": "tr|A0A480QF27-1|A0A480QF27_PIG Isoform 1 of Zinc finger protein 12 OS=Sus scrofa OX=9823 GN=ZNF12 PE=3 SV=1 CANONICAL=A0A480QF27-1" }, "isoforms": [ { "isoform_ac": "A0A480QF27-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QF27/entry#A0A480QF27-1", "sequence": { "sequence": "MFFQEQQKMNQSLEPVSFKDVAVDFTQEEWRQLDAEQKTTYRDVMLENYSHLVSVGCHIIKPEVITKLEQGEDPWIVEGEFLLQTYPEVWKVHDLIEGAPENEDKHPRQTLSINRTTLIEERGNVLGKTFTVETNPVPSRQISYKCDSCEKSLKSVSEYISSDGSYARMKPDECSACGKSLLHVKLEKTHQRDKPNEFNQNGEAYALNEEIYQNIHILEKPFEYIECQKAFQKDTVFVNHMEEKPYKWNESEIAFLQMSNLSVHQGAHMEMKPYECNACGKSFCKKSKFIIHQRTHTGEKPYECNQCGKSFCQKGTLTVHQRTHTGEKPYECNECGKTFYQKLHLIQHQRTHSGEKPYECSYCGKSFCQKTHLTQHQRTHSGERPYVCHDCGKTFSQKSALNDHQKIHTGVKLYKCNECGKCFCRKSTLTTHQRTHTGEKPYECNECGKFFSRLSYLTVHYRTHSGEKPYECNECGKTFYLNSALMRHQRVHTGEKPYECNECGKLFSQLSYLTIHHRTHSGVKPYECNECGKTFYQNSALCRHRRIHKGEKPYECYICGKFFSQMSYLTIHHRIHSGEKPYECNECGKTFCQNSALNRHQRTHTGEKAYECYECGKFFSQMSYLTIHHRIHSGEKPFECNECGKAFSRMSYLTVHYRTHSGEKPYECNECGKKFYHKSAFNSHQRIHRRGNVNVIDVGRLL", "length": 702, "header": "tr|A0A480QF27-1|A0A480QF27_PIG Isoform 1 of Zinc finger protein 12 OS=Sus scrofa OX=9823 GN=ZNF12 PE=3 SV=1 CANONICAL=A0A480QF27-1" }, "locus": { "chromosome": "3", "start_pos": 4467634, "end_pos": 4456467, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085387.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085387.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069866.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069866.1" } ] } }, { "isoform_ac": "A0A5G2R7C8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QF27/entry#A0A5G2R7C8-1", "sequence": { "sequence": "MFFQEQQKMNQSLEPVSFKDVAVDFTQEEWRQLDAEQKTTYRDVMLENYSHLVSVGCHIIKPEVITKLEQGEDPWIVEGEFLLQTYPEVWKVHDLIEGAPENEDKHPRQTLSINRTTLIEEREYISSDGSYARMKPDECSACGKSLLHVKLEKTHQRDKPNEFNQNGEAYALNEEIYQNIHILEKPFEYIECQKAFQKDTVFVNHMEEKPYKWNESEIAFLQMSNLSVHQGAHMEMKPYECNACGKSFCKKSKFIIHQRTHTGEKPYECNQCGKSFCQKGTLTVHQRTHTGEKPYECNECGKTFYQKLHLIQHQRTHSGEKPYECSYCGKSFCQKTHLTQHQRTHSGERPYVCHDCGKTFSQKSALNDHQKIHTGVKLYKCNECGKCFCRKSTLTTHQRTHTGEKPYECNECGKFFSRLSYLTVHYRTHSGEKPYECNECGKTFYLNSALMRHQRVHTGEKPYECNECGKLFSQLSYLTIHHRTHSGVKPYECNECGKTFYQNSALCRHRRIHKGEKPYECYICGKFFSQMSYLTIHHRIHSGEKPYECNECGKTFCQNSALNRHQRTHTGEKAYECYECGKFFSQMSYLTIHHRIHSGEKPFECNECGKAFSRMSYLTVHYRTHSGEKPYECNECGKKFYHKSAFNSHQRIHRRGNVNVIDVGRLL", "length": 667, "header": "tr|A0A5G2R7C8-1|A0A480QF27_PIG Computationally mapped isoform of Zinc finger protein 12 OS=Sus scrofa OX=9823 GN=ZNF12 PE=3 SV=2 CANONICAL=A0A480QF27-1" }, "locus": { "chromosome": "3", "start_pos": 4467634, "end_pos": 4456467, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077951.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077951.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073152.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073152.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R7C8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7C8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520374", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520374", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LYY9-1", "protein_name": "Zinc finger protein 12", "gene_name": "Zfp12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNTSLAPLSFKDVAVAFSQEEWQQLDSEERTTYRDVMLETYSNLVSVGYHIIKPDVIIKLERGDEPWIVEGALSPRSYPDEIWHASSPMEEVQEDEEDQSRSAVFSYGSLLDASRMAAEVAKKLAPSGKVLPKCSSCEESLMCVSAFIRSDGSYAKLRPNVCAGCGKPLLHGKLEKTHPGDDELSGDGEEDCSLREESVYQNVRFVEKPLDYVEWQKPFPKSAVFLNHLEEEPCDWNDSEEAFLQTSDLSTHQESLMEMKPYDCQQCGKSFCKRSKFIIHQRTHTGEKPFKCNQCGKSFCQKGTLTVHQRTHTGEKPYECTECGKTFYQKLHLIQHQRTHSGEKPYKCSYCGKSFCQKTHLTQHQRTHSGERPYVCHDCGKTFSQKSALNDHQKIHTGVKLYKCSECGKCFCRKSTLTTHMRTHTGEKPYECNECGKFFSRLSYLTVHYRTHSGEKPYECTECGKTFYLNSALMRHQRVHTGEKPYECTECGKLFSQLSYLTVHHRTHSGVKPYECSECGKTFYQNSALCRHRRIHRGEKPYECYICGKFFSQMSYLTIHHRIHSGEKPYECSECGKTFCQNSALNRHQRTHTGEKAYECYECGKCFSQMSYLTIHHRIHSGEKPFECNECGKAFSRMSYLTVHCRTHSGEKPYECTECGKKFYHKSAFNSHQRTHRRGNGSGVDVGRLL", "length": 690 }, "evidence": [ { "id": "A0A480QF27", "url": "https://omabrowser.org/oma/group/A0A480QF27/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P17014-1", "protein_name": "Zinc finger protein 12", "gene_name": "ZNF12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNKSLGPVSFKDVAVDFTQEEWQQLDPEQKITYRDVMLENYSNLVSVGYHIIKPDVISKLEQGEEPWIVEGEFLLQSYPDEVWQTDDLIERIQEEENKPSRQTVFIETLIEERGNVPGKTFDVETNPVPSRKIAYKNSLCDSCEKCLTSVSEYISSDGSYARMKADECSGCGKSLLHIKLEKTHPGDQAYEFNQNGEPYTLNEESLYQKIRILEKPFEYIECQKAFQKDTVFVNHMEEKPYKWNGSEIAFLQMSDLTVHQTSHMEMKPYECSECGKSFCKKSKFIIHQRTHTGEKPYECNQCGKSFCQKGTLTVHQRTHTGEKPYECNECGKNFYQKLHLIQHQRTHSGEKPYECSYCGKSFCQKTHLTQHQRTHSGERPYVCHDCGKTFSQKSALNDHQKIHTGVKLYKCSECGKCFCRKSTLTTHLRTHTGEKPYECNECGKFFSRLSYLTVHYRTHSGEKPYECNECGKTFYLNSALMRHQRVHTGEKPYECNECGKLFSQLSYLTIHHRTHSGVKPYECSECGKTFYQNSALCRHRRIHKGEKPYECYICGKFFSQMSYLTIHHRIHSGEKPYECSECGKTFCQNSALNRHQRTHTGEKAYECYECGKCFSQMSYLTIHHRIHSGEKPFECNECGKAFSRMSYLTVHYRTHSGEKPYECTECGKKFYHKSAFNSHQRIHRRGNMNVIDVGRLL", "length": 697 }, "evidence": [ { "id": "A0A480QF27", "url": "https://omabrowser.org/oma/group/A0A480QF27/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TSI0-1", "protein_name": "Zinc finger protein 12", "gene_name": "Znf12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTSLGPLSFKDVAVAFSQEEWQQLDPEERTTYRDVMLETYSNLVSVGYDIIKPDVIIKLEQGEEPWIVEGAFSPQSYPDEIRHMSRLMEEDQGGEENQSSSAVFSYRSRADASSKATDGETKPFPSQKALPQCNSCEKSLMCVSAFIRSDGSYAKLRPNVCAGCGKPLPCSKPEETHPGGESYEFSGDGDEDPLGEEGVYQKGHFLEEPFEYVECQKSFPKGTVFLNHLEEEPCDWNDAEVAFLQTSDLSAHQDSLMEMKPYECQQCGKSFCKKSKFVIHQRTHTGEKPFKCSQCGKSFCQKGTLTVHQRTHTGEKPYECTECGKTFYQKLHLIQHQRTHSGEKPYKCGYCGKSFCQKTHLTQHQRTHSGERPYVCHDCGKTFSQKSALNDHQKIHTGVKLYKCSECGKCFCRKSTLTTHMRTHTGEKPYECNECGKFFSRLSYLTVHYRTHSGEKPYECAECGKSFYLNSALMRHQRVHTGEKPYECNECGKLFSQLSYLTVHHRTHSGVKPYECSECGKTFYQNSALCRHRRIHRGEKPYECYICGKFFSQMSYLTIHHRIHSGEKPYECRECGKSFCQNSALNRHQRTHTGEKAYECYECGKCFSQMSYLTIHHRIHSGEKPFECNECGKAFSRMSYLTVHHRTHSGEKPYECTECGKKFYHKSAFNSHQRTHRRGSGNGVD", "length": 686 }, "evidence": [ { "id": "A0A480QF27", "url": "https://omabrowser.org/oma/group/A0A480QF27/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A480QF27", "url": "https://www.uniprot.org/uniprotkb/A0A480QF27" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A480QF27", "url": "https://www.uniprot.org/uniprotkb/A0A480QF27" } ], "pmid": "" }, { "name": "regulation of immune system process", "id": "GO:0002682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002682", "evidence": [ { "database": "UniProtKB", "id": "A0A480QF27", "url": "https://www.uniprot.org/uniprotkb/A0A480QF27" } ], "pmid": "" }, { "name": "regulation of cytokine production", "id": "GO:0001817", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001817", "evidence": [ { "database": "UniProtKB", "id": "A0A480QF27", "url": "https://www.uniprot.org/uniprotkb/A0A480QF27" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A480QF27", "url": "https://www.uniprot.org/uniprotkb/A0A480QF27" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A480QF27", "url": "https://www.uniprot.org/uniprotkb/A0A480QF27" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A480QF27", "url": "https://www.uniprot.org/uniprotkb/A0A480QF27" } ], "pmid": "" }, { "name": 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"n_glycosylation_sequon" }, { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" }, { "start_pos": 260, "end_pos": 262, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480QF27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QF27" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 274, "end_pos": 301, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A480QF27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QF27" }, { "id": "PS50805", 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"id": "ENSSSCP00000009331.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009331.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R7K5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7K5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9840310", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840310", "resource": "Reactome", "description": "Glycosphingolipid catabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JVP8-1", "protein_name": "Cytosolic beta-glucosidase", "gene_name": "Gba3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAFPVGFGWGAATAAYQVEGGWDADGRGPCVWDTFTHQGGERVFENQTGDVACGSYTLWEEDLKCIKQLGLTHYRFSLSWSRLLPDGTTGFINQKGIDYYNKIIDDLLKNGVTPIVAIYHFDLPQALEDLGGWLSEAIVEAFDKYAQFCFSTFGDRVKQWLTINEPNILALLAYDMGIFAPGVPHIGIGGYQAAHNLIKAHARSWHSYDSLFREEQKGFVSLSLFFCWLEPADPNSEIDQEATKRAINFHLDFFAKPIFIDGDYPDVVKSQVASMSKKQGYPSSRLPEFTEEEKKMIKGTADFFAVQYYTTRLVRHQENKKRELGFLQDVEIEFFPNPFWKNVGWIYVVPWGIRKLLKYIKDTYNNPVIYITENGFPQCDPPSLDDTQRWEYFRQTFQELFKAIHVDDVNLQLYCAWSLLDNFEWNNGYSRRFGLFHVDFEDPARPRTPYRSAKEYAKVIRDNGLAGAM", "length": 469 }, "evidence": [ { "id": "A0A480QKC9", "url": 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"uniprot_canonical_ac": "F1MNT6-1", "protein_name": "Cytosolic beta-glucosidase", "gene_name": "GBA3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAFPAGFGWGAATSAYQVEGGWDADGKGPCVWDTFTHQGGERVFKNQTGDVACGSYTLWEEDLKCIKQLGLTHYRFSLSWSRLLPDGTTGFINQKGIDYYNKIIDDLLANGVRPIVTLYHFDLPQALEDQGGWLSEAIIESFDKYARFCFSTFGDRVKQWITINEPNIFAVMAYEFGVFPPGVSNVGTKAYQAAHNLIKAHARSWHSYDSLFRKEQKGMVSLSIFAGWAEPADPYSASDQEAVKRAMAFQLDFFAKPIFIDGDYPEVVKSQVALMSKKQGYSSSRLPEFTEEEKRMIKGTADFFAVQYYTTRLVKNQENRKGELGLLQDVEVEVFPDPSWISLSWVCVVPWGIRKLLKYIKDTYNNPVIYITENGFPQGDPTSFDDTQRWEYFRQTFQELFKAIQLDKVNLQVYCAWSLLDNFEWNRGYSSRFGLFHVDFEDPARPRVPYTSAKEYAKIIRNNGLEGPP", "length": 469 }, "evidence": [ { "id": "A0A480QKC9", "url": "https://omabrowser.org/oma/group/A0A480QKC9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "glucosylceramidase activity", "id": "GO:0004348", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004348", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKC9", "url": "https://www.uniprot.org/uniprotkb/A0A480QKC9" } ], "pmid": "" }, { "name": "glycosylceramidase activity", "id": "GO:0017042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017042", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKC9", "url": "https://www.uniprot.org/uniprotkb/A0A480QKC9" } ], "pmid": "" }, { "name": "beta-glucosidase activity", "id": "GO:0008422", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008422", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKC9", "url": "https://www.uniprot.org/uniprotkb/A0A480QKC9" } ], "pmid": "" }, { "name": "beta-galactosidase activity", "id": "GO:0004565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004565", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKC9", "url": "https://www.uniprot.org/uniprotkb/A0A480QKC9" } ], "pmid": "" }, { "name": "galactosylceramidase activity", "id": "GO:0004336", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004336", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKC9", "url": "https://www.uniprot.org/uniprotkb/A0A480QKC9" } ], "pmid": "" }, { "name": "hydrolase activity, hydrolyzing O-glycosyl compounds", "id": "GO:0004553", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004553", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKC9", "url": "https://www.uniprot.org/uniprotkb/A0A480QKC9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKC9", "url": "https://www.uniprot.org/uniprotkb/A0A480QKC9" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKC9", "url": "https://www.uniprot.org/uniprotkb/A0A480QKC9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "carbohydrate catabolic process", "id": "GO:0016052", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016052", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKC9", "url": "https://www.uniprot.org/uniprotkb/A0A480QKC9" } ], "pmid": "" }, { "name": "glycosylceramide catabolic process", "id": "GO:0046477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046477", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKC9", "url": "https://www.uniprot.org/uniprotkb/A0A480QKC9" } ], "pmid": "" }, { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKC9", "url": "https://www.uniprot.org/uniprotkb/A0A480QKC9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 46, "end_pos": 48, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13269", "name": "", "equation": "a beta-D-glucosyl-(1<->1')-N-acylsphing-4-enine + H2O = an N-acylsphing-4-enine + D-glucose", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13269", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13269" } ] }, { "id": "14297", "name": "", "equation": "a beta-D-galactosyl-(1<->1')-N-acylsphing-4-enine + H2O = D-galactose + an N-acylsphing-4-enine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "14297", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/14297" } ] }, { "id": "43908", "name": "", "equation": "beta-D-galactosyl-(1<->1)-sphing-4-enine + H2O = sphing-4-enine + D-galactose", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "43908", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/43908" } ] }, { "id": "59284", "name": "", "equation": "beta-D-glucosyl-(1<->1)-N-octadecanoylsphing-4-enine + H2O = N-octadecanoylsphing-4-enine + D-glucose", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "59284", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/59284" } ] }, { "id": "59288", "name": "", "equation": "beta-D-glucosyl-(1<->1)-sphing-4-enine + H2O = sphing-4-enine + D-glucose", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "59288", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/59288" } ] }, { "id": "59292", "name": "", "equation": "beta-D-galactosyl-(1<->1')-N-octadecanoylsphing-4-enine + H2O = N-octadecanoylsphing-4-enine + D-galactose", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "59292", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/59292" } ] }, { "id": "70239", "name": "", "equation": "a beta-D-xylosyl-(1<->1')-N-acylsphing-4-enine + cholesterol = cholesteryl 3-beta-D-xyloside + an N-acylsphing-4-enine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "70239", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/70239" } ] }, { "id": "R-SSC-1861789", "name": "GBA3 hydrolyzes GlcCer (cytosol)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-1861764" ], "output_participant_list": [ "R-ALL-194377" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1861789", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1861789" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-1861764", "participant_name": "GlcCer [cytosol]", "crossref": [ { "id": "22801", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-194377", "participant_name": "CERA [cytosol]", "crossref": [ { "id": "C00195", "database": "COMPOUND", "url": "" }, { "id": "83273", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 46, "end_pos": 48 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480QKQ3-1", "uniprot_ac": "A0A480QKQ3", "uniprot_id": "A0A480QKQ3_PIG", "mass": { "chemical_mass": 61573.0, "monoisotopic_mass": 61573.0 }, "refseq": { "ac": "XP_020932873", "name": "spermine oxidase isoform 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932873" }, "gene_names": [ { "name": "SMOX", "type": "recommended", "evidence": [ { "id": "A0A480QKQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3" } ] }, { "name": "SMOX", "type": "synonym", "evidence": [ { "id": "XP_020932873", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932873" } ] } ], "protein_names": [ { "name": "Spermine oxidase", "type": "recommended", "evidence": [ { "id": "A0A480QKQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3/entry#names_and_taxonomy" } ] }, { "name": "1.5.3.16", "type": "synonym", "evidence": [ { "id": "A0A480QKQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3/entry#names_and_taxonomy" } ] }, { "name": "Polyamine oxidase 1", "type": "synonym", "evidence": [ { "id": "A0A480QKQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3/entry#names_and_taxonomy" } ] }, { "name": "spermine oxidase isoform 1", "type": "synonym", "evidence": [ { "id": "XP_020932873", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932873" } ] } ], "function": [ { "annotation": "Flavoenzyme which catalyzes the oxidation of spermine to spermidine. Can also use N(1)-acetylspermine and spermidine as substrates, with different affinity depending on the isoform (isozyme) and on the experimental conditions. Plays an important role in the regulation of polyamine intracellular concentration and has the potential to act as a determinant of cellular sensitivity to the antitumor polyamine analogs. May contribute to beta-alanine production via aldehyde dehydrogenase conversion of 3-amino-propanal.", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKQ3", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3#function" }, { "database": "UniProtKB", "id": "ARBA00057555", "url": "https://www.uniprot.org/uniprotkb/ARBA00057555#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480QKQ3", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMOX", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3", "locus": { "chromosome": "17", "start_pos": 31548636, "end_pos": 31591975, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007140", "url": "https://www.ensembl.org/id/ENSSSCG00000007140" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007140", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007140", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152781", "url": "https://www.ncbi.nlm.nih.gov/gene/100152781", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050281", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050281", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CITGCHS", "url": "https://omabrowser.org/oma/group/CITGCHS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S8C9", "url": "https://www.orthodb.org/?gene=F1S8C9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10742", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10742", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10742:SF416", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10742:SF416", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01593", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01593", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-141334", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141334", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-351200", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-351200", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020932873", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932873", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "25804", "url": "https://www.rhea-db.org/rhea/25804", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A480QKQ3", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480QKQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8C9", "url": "https://www.uniprot.org/uniprotkb/F1S8C9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8C9-1", "url": "https://www.uniprot.org/uniprotkb/F1S8C9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQSCESSGDSADDPLSCGLRRRGQPRVVVIGAGLAGLAAAKALLEQGFTNVTVLEASSRIGGRVQSVKLGHATFELGATWIHGSHGNPIYHLAEANGLLEETTDGERSVGRISLYSKNGVACYLTNHGRRIPKDVVEEFSDLYNEVYNLTQEFFRHGKPVNAESQNSVGVFTREEVRNRIRDDPDEPEATKRLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWTEIPGAHHIIPSGFMRVVELLAEGIPAHVIQLGKPVRCVHWNQASACPRGPEIEPRGEGDHNHDAGEGSQGGEEPPGERQDEDEQWPVLVECEDCEVIPADHVIVTVSLGVLKRQHASFFQPGLPTEKVVAIHRLGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESRTLTYPPELWYRKICGFDVLYPPERYGHVLSGWICGEEALVMEKCDDEAVAEICTEMLRQFTGNPNIPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTAPMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYQDLFQQGT", "length": 555, "header": "tr|A0A480QKQ3-1|A0A480QKQ3_PIG Isoform 1 of Spermine oxidase OS=Sus scrofa OX=9823 GN=SMOX PE=3 SV=1 CANONICAL=A0A480QKQ3-1" }, "isoforms": [ { "isoform_ac": "A0A480QKQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3/entry#A0A480QKQ3-1", "sequence": { "sequence": "MQSCESSGDSADDPLSCGLRRRGQPRVVVIGAGLAGLAAAKALLEQGFTNVTVLEASSRIGGRVQSVKLGHATFELGATWIHGSHGNPIYHLAEANGLLEETTDGERSVGRISLYSKNGVACYLTNHGRRIPKDVVEEFSDLYNEVYNLTQEFFRHGKPVNAESQNSVGVFTREEVRNRIRDDPDEPEATKRLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWTEIPGAHHIIPSGFMRVVELLAEGIPAHVIQLGKPVRCVHWNQASACPRGPEIEPRGEGDHNHDAGEGSQGGEEPPGERQDEDEQWPVLVECEDCEVIPADHVIVTVSLGVLKRQHASFFQPGLPTEKVVAIHRLGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESRTLTYPPELWYRKICGFDVLYPPERYGHVLSGWICGEEALVMEKCDDEAVAEICTEMLRQFTGNPNIPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTAPMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYQDLFQQGT", "length": 555, "header": "tr|A0A480QKQ3-1|A0A480QKQ3_PIG Isoform 1 of Spermine oxidase OS=Sus scrofa OX=9823 GN=SMOX PE=3 SV=1 CANONICAL=A0A480QKQ3-1" }, "locus": { "chromosome": "17", "start_pos": 31567785, "end_pos": 31553271, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075810.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075810.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068546.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068546.1" } ] } }, { "isoform_ac": "A0A5G2RAB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3/entry#A0A5G2RAB4-1", "sequence": { "sequence": "MQSCESSGDSADDPLSCGLRRRGQPRVVVIGAGLAGLAAAKALLEQGFTNVTVLEASSRIGGRVQSVKLGHATFELGATWIHGSHGNPIYHLAEANGLLEETTDGERSVGRISLYSKNGVACYLTNHGRRIPKDVVEEFSDLYNEPMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYQDLFQQGT", "length": 190, "header": "tr|A0A5G2RAB4-1|A0A480QKQ3_PIG Computationally mapped isoform of Spermine oxidase OS=Sus scrofa OX=9823 GN=SMOX PE=3 SV=1 CANONICAL=A0A480QKQ3-1" }, "locus": { "chromosome": "17", "start_pos": 31567785, "end_pos": 31553271, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086006.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086006.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067553.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067553.1" } ] } }, { "isoform_ac": "F1S8C9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3/entry#F1S8C9-1", "sequence": { "sequence": "MQSCESSGDSADDPLSCGLRRRGQPRVVVIGAGLAGLAAAKALLEQGFTNVTVLEASSRIGGRVQSVKLGHATFELGATWIHGSHGNPIYHLAEANGLLEETTDGERSVGRISLYSKNGVACYLTNHGRRIPKDVVEEFSDLYNEVYNLTQEFFRHGKPVNAESQNSVGVFTREEVRNRIRDDPDEPEATKRLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWTEIPGAHHIIPSGFMRVVELLAEGIPAHVIQLGKPVRCVHWNQASACPRGPEIEPRGEGDHNHDAGEGSQGGEEPPGERQDEDEQWPVLVECEDCEVIPADHVIVTVSLGVLKRQHASFFQPGLPTEKVVAIHRLGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESRTLTYPPELWYRKICGFDVLYPPERYGHVLSGWICGEEALVMEKCDDEAVAEICTEMLRQFTGNPNIPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTAQGSSSKQLPGLLLSSKCPEQSLEPNRGSIKPMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYQDLFQQGT", "length": 585, "header": "tr|F1S8C9-1|A0A480QKQ3_PIG Computationally mapped isoform of Spermine oxidase OS=Sus scrofa OX=9823 GN=SMOX PE=3 SV=4 CANONICAL=A0A480QKQ3-1" }, "locus": { "chromosome": "17", "start_pos": 31567785, "end_pos": 31553271, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007812.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007812.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007602.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007602.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S8C9", "url": "https://www.uniprot.org/uniprotkb/F1S8C9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-141334", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141334", "resource": "Reactome", "description": "PAOs oxidise polyamines to amines" }, { "id": "R-SSC-351200", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-351200", "resource": "Reactome", "description": "Interconversion of polyamines" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YPI2-1", "protein_name": "Peroxisomal N(1)-acetyl-spermine/spermidine oxidase", "gene_name": "SMOX", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSCEISGDSTDDPLSSGLRRTRQPRIVVIGAGLAGLSAAKALLESGFTDVTILEATDRIGGRVQSVKLGHATFELGATWIHGSHGNPVYHLAEDNGLLEETTDGERSVGRISLYSKNGVAYHLTNNGQRIPKDVVEEFSDLYNEVYNLTQEFFQRGKPVNAESQNSVGVFTRDVVRKRVKADPDDTEAVKRLKLAMIQQYLKVESCESSSHSMDEVSLSEFGEWTEIPGAHHIIPCGFIKIVEILARSIPESVIQLRKPVKCIHWNQSVSKEIERVADHNSDLPEEDRGSNVFVECEDCEFIPADHVIVTVSLGVLKKRHESLFHPRLPEEKVMAIEKLGINTTDKIFLEFEEPFWSSECNSIQFVWEDEAESESLTYPEELWYKKICSFDVLYPPERYGHVLSGWICGEEALIMEKCDDETVAETCTEMLRKFTGQPCPGSLGNPNIPKPRRILRSSWGSNPNFRGSYSYTQVGSSGADVEKLAKPLPYAESSKTTPMQVMFSGEATHRKYYSTTHGAVLSGQREAAHLIEMYQDLLQCRS", "length": 543 }, "evidence": [ { "id": "A0A480QKQ3", "url": "https://omabrowser.org/oma/group/A0A480QKQ3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "B8A458-1", "protein_name": "Peroxisomal N(1)-acetyl-spermine/spermidine oxidase", "gene_name": "smox", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MQSCEISSDSTDDPLSSALHGHRQPRIVVIGAGLAGLAATKTLLENGFTNVTVLEASDRIGGRVQSIQHGKTTLELGATWIHGANGNPVYHLAEDNGLLEHTTEEERSVGRISLYAKNGVAHYQTNNGKRIPKDLVEEFSDLYNEVYELTQEFFQNGKPVGAESQNSVGIFTRDVVRKKIMLDPYDSESIRKLKLSMLQQYLKVESCESSSPNMDEVSLSEFGEWTEIPGAHHVIPTGFIKVVEILAQDIPSCVLHLSKPVRRVHWNCSSQDAEEFGDQVDHNQDQRPSPSPVCVECEDGERLLADHVILTASLGVLKKAHKTLFSPGLPQDKAQAIQKLGISTTDKIFLEFAEPFWSPECNSIQFVWEDEAQLESQAYPEELWYRKICSFDVLYPPERYGHMLSGWICGEEALRMERCDDETVAEICTELLRQFTGNQNIPKPRRILRSSWGSNPYIRGSYSFTRVGSSGRDVEKLAEPLPYIKNTKAPPLQVLFAGEATHRKYYSTTHGALLSGQREANRLMELYQYSCAETTKPNI", "length": 539 }, "evidence": [ { "id": "A0A480QKQ3", "url": "https://omabrowser.org/oma/group/A0A480QKQ3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E1B7M5-1", "protein_name": "Spermine oxidase", "gene_name": "SMOX", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSCESSGDSADDPLSRGLRRRGQPRVVVIGAGLAGLAAAKALLEQGFTDVTVLEASSRIGGRVQSVKLGHATFELGATWIHGSHGNPIYHLAEANGLLEETTDGERSVGRISLYSKNGVACYLTNRGCRIPKDVVEEFSDLYNEVYNLTQEFFRHGKPVNAESQNSVGVFTREEVRNRIRDDPDDPEATKRLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWTEIPGAHHVIPSGFMRVVELLAEGIPAHVIQLGKPVRCVHWDQASSRPRGPEIEPRDEGDHNHDAGEGSQGGEEPREERQDEDEQWPVVVECEDCEVIPADHVIVTVSLGVLKRQHASFFRPGLPAEKVAAIHRLGIGTTDKIFLEFEEPFWGPECNSLRFVWEDEAESCTLTYPPELWYRKICGFDVLYPPERYGHVLSGWICGEEALVMEKCDDEAVAEICTEMLRQFTGNPNIPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTAPMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYRDLFQQGT", "length": 555 }, "evidence": [ { "id": "A0A480QKQ3", "url": "https://omabrowser.org/oma/group/A0A480QKQ3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q99K82-1", "protein_name": "Spermine oxidase", "gene_name": "Smox", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQSCESSGDSADDPLSRGLRRRGQPRVVVIGAGLAGLAAARALLEQGFTDVTVLEASSHIGGRVQSVRLGDTTFELGATWIHGSHGNPIYQLAEANGLLEETTDGERSVGRISLYSKNGVACYLTNRGCRIPKDVVEEFSDLYNEVYNMTQEFFRHGKPVNAESQNSVGVFTREKVRNRIRDDPDDTEATKRLKLAMIQQYLKVESCESSSHSIDEVSLSAFGEWTEIPGAHHIIPSGFMRVVELLAEGIPPHVIQLGKPVRCIHWDQASAHPRGPEIEPRGEGDHNHDTGEGGQSGENPQQGRWDEDEPWPVVVECEDCEVIPADHVIVTVSLGVLKRQYTSFFRPCLPTEKVAAIHRLGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESCTLTYPPELWYRKICGFDVLYPPERYGHVLSGWICGEEALVMERCDDEAVAEICTEMLRQFTGNPNIPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTAPMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYRDLFQQGP", "length": 555 }, "evidence": [ { "id": "A0A480QKQ3", "url": "https://omabrowser.org/oma/group/A0A480QKQ3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NWM0-1", "protein_name": "Spermine oxidase", "gene_name": "SMOX", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQSCESSGDSADDPLSRGLRRRGQPRVVVIGAGLAGLAAAKALLEQGFTDVTVLEASSHIGGRVQSVKLGHATFELGATWIHGSHGNPIYHLAEANGLLEETTDGERSVGRISLYSKNGVACYLTNHGRRIPKDVVEEFSDLYNEVYNLTQEFFRHDKPVNAESQNSVGVFTREEVRNRIRNDPDDPEATKRLKLAMIQQYLKVESCESSSHSMDEVSLSAFGEWTEIPGAHHIIPSGFMRVVELLAEGIPAHVIQLGKPVRCIHWDQASARPRGPEIEPRGEGDHNHDTGEGGQGGEEPRGGRWDEDEQWSVVVECEDCELIPADHVIVTVSLGVLKRQYTSFFRPGLPTEKVAAIHRLGIGTTDKIFLEFEEPFWGPECNSLQFVWEDEAESHTLTYPPELWYRKICGFDVLYPPERYGHVLSGWICGEEALVMEKCDDEAVAEICTEMLRQFTGNPNIPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTAPMQVLFSGEATHRKYYSTTHGALLSGQREAARLIEMYRDLFQQGT", "length": 555 }, "evidence": [ { "id": "A0A480QKQ3", "url": "https://omabrowser.org/oma/group/A0A480QKQ3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VHN8-1", "protein_name": "Amine oxidase domain-containing protein", "gene_name": "Dmel\\CG8032", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGDKEEPVTPAPSPTEEGMANIGSAGAGDQPQTSGNNTNVKIVIIGAGMAGLSAANHLLQNGCDDFLILEARGRVGGRIVSIPLSNNQKIELGANWIHGVLGNPIFELAVQHGLVSVVNVPKPHKVVATTEDGHQVPFNILQEIYEAYVCFLRRCDEYFLCQYSPPPDIHSVGEHINYEIEIYLSGVQDPKEKRLKQSIFNCLLKRETCITGCNNMDEVDLLELGSYTELQGGNIVLPTGYSSILRPLGAQIAKQSILTKCPVKKIHWKRKKTFTGLETVDENSEDEHSDDSERTVTEVPTGEIRGASVESNTSSNCDYPAGNVRIDCEDGRVFHAAHVICTIPLGVLKNTHRTLFDPVLPQYKQESIENLMFGTVDKIFLEYERPFLSADISEIMLLWDDDKRDMNSSEEELASEAYLSKNWFKKIYSFAKVTDTLLLGWVSGREAEYMEKLDHEAVAEKCTEILRNFLQDPYVPKPKRCVCTSWKSQDFTGGAYTSIPVGATQEDIENLAQPLYATPQAMKPAIVFAGEHTHSSFYSTVHGAYLSGRTAAQHLLASDEPDEIIMESDGSDLSAWIQGIALD", "length": 583 }, "evidence": [ { "id": "A0A480QKQ3", "url": "https://omabrowser.org/oma/group/A0A480QKQ3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKQ3", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKQ3", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKQ3", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKQ3", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3" } ], "pmid": "" }, { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKQ3", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "spermine catabolic process", "id": "GO:0046208", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046208", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKQ3", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3" } ], "pmid": "" }, { "name": "polyamine catabolic process", "id": "GO:0006598", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006598", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKQ3", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "polyamine oxidase activity", "id": "GO:0046592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046592", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKQ3", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3" } ], "pmid": "" }, { "name": "spermine oxidase activity", "id": "GO:0052901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052901", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKQ3", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3" } ], "pmid": "" }, { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "A0A480QKQ3", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 148, "end_pos": 150, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "25804", "name": "", "equation": "spermine + O2 + H2O = 3-aminopropanal + spermidine + H2O2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "25804", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/25804" } ] }, { "id": "R-SSC-141341", "name": "SMOX-3 oxidises SPN to SPM", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, peroxisomal matrix", "input_participant_list": [ "R-ALL-141342", "R-ALL-141343" ], "output_participant_list": [ "R-ALL-141324", "R-ALL-141328" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-141341", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141341" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-141324", "participant_name": "SPM [peroxisomal matrix]", "crossref": [ { "id": "C00315", "database": "COMPOUND", "url": "" }, { "id": "57834", "database": "ChEBI", "url": "" }, { "id": "ZINC000001532612", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-ALL-141328", "participant_name": "3APAL [peroxisomal matrix]", "crossref": [ { "id": "ZINC000001529387", "database": "ZINC", "url": "" }, { "id": "C02229", "database": "COMPOUND", "url": "" }, { "id": "HMDB0062210", "database": "HMDB Metabolite", "url": "" }, { "id": "58374", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-141342", "participant_name": "SPN [peroxisomal matrix]", "crossref": [ { "id": "45725", "database": "ChEBI", "url": "" }, { "id": "ZINC000001532734", "database": "ZINC", "url": "" }, { "id": "C00750", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-141343", "participant_name": "H2O [peroxisomal matrix]", "crossref": [ { "id": "15377", "database": "ChEBI", "url": "" }, { "id": "8145132", "database": "PubChem Substance", "url": "" }, { "id": "C00001", "database": "COMPOUND", "url": "" }, { "id": "HMDB0002111", "database": "HMDB Metabolite", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480QKQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QKQ3" }, { "id": "PF01593", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01593" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Amine oxidase", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 268, "start_aa": "Leu", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 148, "end_pos": 150 }, { "start_pos": 50, "end_pos": 52 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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Acts as a damage-induced regulator of muscle remodeling by mediating the interferon gamma response in muscle cells.", "evidence": [ { "database": "UniProtKB", "id": "A0A480QPH8", "url": "https://www.uniprot.org/uniprotkb/A0A480QPH8#function" }, { "database": "UniProtKB", "id": "ARBA00093286", "url": "https://www.uniprot.org/uniprotkb/ARBA00093286#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480QPH8", "url": "https://www.uniprot.org/uniprotkb/A0A480QPH8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF697", "url": "https://www.uniprot.org/uniprotkb/A0A480QPH8", "locus": { "chromosome": "4", "start_pos": 101552753, "end_pos": 101521763, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000063017", "url": "https://www.ensembl.org/id/ENSSSCG00000063017" } ] } } ], "crossref": [ { "id": "100154558", "url": "https://www.ncbi.nlm.nih.gov/gene/100154558", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154558", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154558", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EDKQGVC", "url": "https://omabrowser.org/oma/group/EDKQGVC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480QPH8", "url": "https://www.orthodb.org/?gene=A0A480QPH8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24379", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24379", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24379:SF122", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24379:SF122", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003355276", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355276", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480QPH8", "url": "https://www.uniprot.org/uniprotkb/A0A480QPH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480QPH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QPH8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQEDKQGVCGAQDSGDNGMGSDFENSEDGEGDSEERGMGSNPHDAAKTEGRPEQEMGSNPREEALRGHSEEKEVAPDICTAGLLSEEEGVALREEEDDPSGVAEMAMFPGLSESDSISRSFREEEEEEESAGENRLEDEEEQPTPPVLPWRRHLSLGSRHRGDKPAHRRFRRLHHPMAVDLGELDSLMASIMDAPTICPDCGESFSPGAAFLQHQRIHRLAEAAAAASLEPFGFAGECGAVVGMMGVGVAGGFGAGPALARPPREKPFRCGECGKGFSRNTYLTNHLRLHTGERPNLCADCGKSFSWRADLLKHRRLHTGEKPYPCPECGEAFSLSSHLLSHRRAHAAASGAGPAALRPFACGECGKGFVRRSHLANHQRIHTGEKPHGCGECGKRFSWRSDLVKHQRVHTGEKPYMCSECGETFSVSSHLFTHKRTHSGERPYVCRECGKGFGRNSHLVNHLRVHTGEKPFRCGQCEKRFSDFSTLTQHQRTHTGEKPYTCIECGKSFIQSSHLIRHRRIHTGNKPHKCAGCGKGFRYKTHLAQHQKLHLC", "length": 553, "header": "tr|A0A480QPH8-1|A0A480QPH8_PIG Isoform 1 of Zinc finger protein 697 OS=Sus scrofa OX=9823 GN=ZNF697 PE=3 SV=1 CANONICAL=A0A480QPH8-1" }, "isoforms": [ { "isoform_ac": "A0A480QPH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QPH8/entry#A0A480QPH8-1", "sequence": { "sequence": "MEQEDKQGVCGAQDSGDNGMGSDFENSEDGEGDSEERGMGSNPHDAAKTEGRPEQEMGSNPREEALRGHSEEKEVAPDICTAGLLSEEEGVALREEEDDPSGVAEMAMFPGLSESDSISRSFREEEEEEESAGENRLEDEEEQPTPPVLPWRRHLSLGSRHRGDKPAHRRFRRLHHPMAVDLGELDSLMASIMDAPTICPDCGESFSPGAAFLQHQRIHRLAEAAAAASLEPFGFAGECGAVVGMMGVGVAGGFGAGPALARPPREKPFRCGECGKGFSRNTYLTNHLRLHTGERPNLCADCGKSFSWRADLLKHRRLHTGEKPYPCPECGEAFSLSSHLLSHRRAHAAASGAGPAALRPFACGECGKGFVRRSHLANHQRIHTGEKPHGCGECGKRFSWRSDLVKHQRVHTGEKPYMCSECGETFSVSSHLFTHKRTHSGERPYVCRECGKGFGRNSHLVNHLRVHTGEKPFRCGQCEKRFSDFSTLTQHQRTHTGEKPYTCIECGKSFIQSSHLIRHRRIHTGNKPHKCAGCGKGFRYKTHLAQHQKLHLC", "length": 553, "header": "tr|A0A480QPH8-1|A0A480QPH8_PIG Isoform 1 of Zinc finger protein 697 OS=Sus scrofa OX=9823 GN=ZNF697 PE=3 SV=1 CANONICAL=A0A480QPH8-1" }, "locus": { "chromosome": "4", "start_pos": 101548634, "end_pos": 101545543, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106737.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106737.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077361.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077361.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480QPH8", "url": "https://www.uniprot.org/uniprotkb/A0A480QPH8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154558", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154558", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4AA20-1", "protein_name": "Zinc finger protein 697", "gene_name": "Zfp697", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSFVQPHRKPQREGSGQPARVPARGPIAAASGRRAGARLGQCAQESPGASQGPCFPPCSLSCWMEQEDNLGVCADQSSEDRGMGSDFENSEDQEGDPEERGVGSNPQDTEERGHLEQELDSNPQDDDLRGDPPERDIVSTVCSEGLLSEEEGAILREEEDDQPGVADMALFPGLSESDSITRSPQGEEEEEEEEEEESAGENRLIEKEEPLPTPVLPWRRHLSLGGRHRGDKPAYRRFHRLHHPMAVDLGELDSLMASIMDAPTICPDCGESFSPGAAFLQHQRIHRLAEAAAMASLEPFGLAGECGGVVGMMGVGMGVSGGFGAGPTLARPPREKPFRCGECGKGFSRNTYLTNHLRLHTGERPNLCADCGKSFSWRADLLKHRRLHTGEKPYPCPECGEAFSLSSHLLSHRRAHAAAGGAGSAAAAAAALRPFACGECGKGFVRRSHLANHQRIHTGEKPHGCGECGKRFSWRSDLVKHQRVHTGEKPYMCSECGETFSVSSHLFTHKRTHSGERPYVCRECGKGFGRNSHLVNHLRVHTGEKPFSCGQCEKRFSDFSTLTQHQRTHTGEKPYTCLECGKSFIQSSHLIRHRRIHTGNKPHKCTGCGKGFRYKTHLAQHQKLHLC", "length": 627 }, "evidence": [ { "id": "A0A480QPH8", "url": "https://omabrowser.org/oma/group/A0A480QPH8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1B8V4-1", "protein_name": "Zinc finger protein 697", "gene_name": "ZNF697", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEQDDKQGVCEAQDSQDKGMGSDFENCEDREGDPDERGMGSNPQDADKREGHLGQEMGSDPQDEAPRGHSEERELMSNICTEGLLSEEDGVASREEEDDQSGVVEMAMFPGLSESDSISRSPQEEEEEESAGENRLEEEEEQPPPAVLPWRRHLSLGSRHRGDKPAHRRFRRLHHPMSMDLGELDSLMASIMDAPTICPDCGESFSPGAAFLQHQRIHRLAEAAAAASLEPFGFAGECEAVVGMMGVGGGFGAGPALARPPREKPFRCGECGKGFSRNTYLTNHLRLHTGERPNLCADCGKSFSWRADLLKHRRLHTGEKPYPCPECGEAFSLSSHLLSHRRAHAAASGAGPAALRPFACGECGKGFVRRSHLANHQRIHTGEKPHGCSECGKRFSWRSDLVKHQRVHTGEKPYMCSECGETFSVSSHLFTHKRTHSGERPYVCRECGKGFGRNSHLVNHLRVHTGEKPFRCGQCEKRFSDFSTLTQHQRTHTGEKPYTCIECGKSFIQSSHLIRHRRIHTGNKPHKCAGCGKGFRYKTHLAQHQKLHLC", "length": 550 }, "evidence": [ { "id": "A0A480QPH8", "url": "https://omabrowser.org/oma/group/A0A480QPH8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q569E7-1", "protein_name": "Zinc finger protein 697", "gene_name": "Znf697", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEQEDNQGVCEYQTSEDRGMDSDLENSEDREGDPEERGMGSNPWDTEDRGHLEQEVDSNPQDDDLRGDSRERDRASTVCSEGRLSEEERAILREEEDDQPGVADMALFPGLSESDSISRSPRGEEDEEEEDEEEESAGENRLIEEEDPLPTPVLPWRRHLSLGGRHRGDKPAHRRFHRLHHPMAMDLGELDSLMASIMDAPTICPDCGESFSPGAAFLQHQRIHRLAEAAAVASLEPFGLAGECGGVVGMMGMGMGVGMGVAGGFGAGPTLARPPREKPFRCGECGKGFSRNTYLTNHLRLHTGERPNLCADCGKSFSWRADLLKHRRLHTGEKPYPCPECGEAFSLSSHLLSHRRAHAAAGGGAGSAGSAAALRPFACGECGKGFVRRSHLANHQRIHTGEKPHGCGECGKRFSWRSDLVKHQRVHTGEKPYMCSECGETFSVSSHLFTHKRTHSGERPYVCRECGKGFGRNSHLVNHLRVHTGEKPFGCGQCEKRFSDFSTLTQHQRTHTGEKPYTCLECGKSFIQSSHLIRHRRIHTGNKPHKCAGCGKGFRYKTHLAQHQKLHLC", "length": 569 }, "evidence": [ { "id": "A0A480QPH8", "url": "https://omabrowser.org/oma/group/A0A480QPH8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5TEC3-1", "protein_name": "Zinc finger protein 697", "gene_name": "ZNF697", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKQEDNQGVCAHQDSEDKGMGSDFEDSEDREGDPEEREMGSNPHDTNKREGHPEPEMGSNPQDSRHREAVPDICTEGQLSEEEGVSVRGEEDDQSGVADMAMFPGLSESDSISRSLREDDDESAGENRLEEEEEQPAPPVLPWRRHLSLGSRHRGDKPAHRRFHRLHHPMAVDLGELDSLVASIMDAPTICPDCGESFSPGAAFLQHQRIHRLAEAAAAASLEPFGLAGECDAMVGMMGVGVAGGFGAGPPLARPPREKPFRCGECGKGFSRNTYLTNHLRLHTGERPNLCADCGKSFSWRADLLKHRRLHTGEKPYPCPECGEAFSLSSHLLSHRRAHAAASGAGAAALRPFACGECGKGFVRRSHLANHQRIHTGEKPHGCGECGKRFSWRSDLVKHQRVHTGEKPYMCSECGETFSVSSHLFTHKRTHSGERPYVCRECGKGFGRNSHLVNHLRVHTGEKPFRCGQCEKRFSDFSTLTQHQRTHTGEKPYTCIECGKSFIQSSHLIRHRRIHTGNKPHKCAGCGKGFRYKTHLAQHQKLHLC", "length": 545 }, "evidence": [ { "id": "A0A480QPH8", "url": "https://omabrowser.org/oma/group/A0A480QPH8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480QPH8", "url": "https://www.uniprot.org/uniprotkb/A0A480QPH8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A480QPH8", "url": "https://www.uniprot.org/uniprotkb/A0A480QPH8" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A480QPH8", "url": "https://www.uniprot.org/uniprotkb/A0A480QPH8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A480QPH8", "url": "https://www.uniprot.org/uniprotkb/A0A480QPH8" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A480QPH8", "url": "https://www.uniprot.org/uniprotkb/A0A480QPH8" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A480QPH8", "url": "https://www.uniprot.org/uniprotkb/A0A480QPH8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480QPH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QPH8" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 197, "end_pos": 224, "start_aa": "Thr", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480QR74-1", "uniprot_ac": "A0A480QR74", "uniprot_id": "A0A480QR74_PIG", "mass": { "chemical_mass": 84564.0, "monoisotopic_mass": 84564.0 }, "refseq": { "ac": "XP_020934968", "name": "probable C-mannosyltransferase DPY19L1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934968" }, "gene_names": [ { "name": "DPY19L1", "type": "recommended", "evidence": [ { "id": "A0A480QR74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QR74" } ] }, { "name": "DPY19L1", "type": "synonym", "evidence": [ { "id": "XP_020934968", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934968" } ] } ], "protein_names": [ { "name": "Dpy-19 like C-mannosyltransferase 1", "type": "synonym", "evidence": [ { "id": "A0A480QR74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QR74/entry#names_and_taxonomy" } ] }, { "name": "probable C-mannosyltransferase DPY19L1", "type": "synonym", "evidence": [ { "id": "XP_020934968", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934968" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480QR74", "url": "https://www.uniprot.org/uniprotkb/A0A480QR74" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DPY19L1", "url": "https://www.uniprot.org/uniprotkb/A0A480QR74", "locus": { "chromosome": "18", "start_pos": 38903662, "end_pos": 38801334, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027063", "url": "https://www.ensembl.org/id/ENSSSCG00000027063" } ] } } ], "crossref": [ { "id": "ENSSSCG00000027063", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027063", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20178", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20178", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525550", "url": "https://www.ncbi.nlm.nih.gov/gene/100525550", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018732", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018732", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047463", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047463", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525550", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525550", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YDNITEY", "url": "https://omabrowser.org/oma/group/YDNITEY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480QR74", "url": "https://www.orthodb.org/?gene=A0A480QR74", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31488", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31488", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31488:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31488:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10034", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10034", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020934968", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934968", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480QR74", "url": "https://www.uniprot.org/uniprotkb/A0A480QR74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480QR74-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QR74-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8H7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8H7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8H7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8H7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPG7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5Q8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5Q8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5Q8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLQARNKHREAAPKPPQPPRASQSPLRGTPDVGAGEPGPERAPPSPRRKGAAGRKGLRAEPAAPAAGGGLGGRLAARLSGALGLRRSGRGRTWTTLLLAAFAAVLHWSHITHLFENDRHFSHLSTLEREMAFRTEMGLYYSYFKTIVEAPSFLNGVWMIMNDKLTEYPLVINTLKRFNLYPEVILASWYRIYIKIMDLIGIQTKICWTVTRGEGLSPIESCEGLGDPACFYVAVIFILNGLMMALFFIYGTYLSGSRLGGLVTVLCFFFNHGECTRVMWTPPLRESFSYPFLVLQMLLVTHILRATKVYRGSLIALCISNVFFMLPWQFAQFVLLTQIASLFAVYVVGYIDICKLRKIIYMHMISLALCFVLMFGNSMLLTSYYASSLVIIWGLLAMKPHFLKINVSELSLWVIQGCFWLFGTVILKYLTSKIFGIADDAHIGNLLTSKFFSYKDFDTLLYTCAAEFDFMEKETPLRYTKTLLLPVVLVVFIAIIRKIISDMWSVLTKQQAHIRKHQFDHGELVYHALQLLAYTVLGVLIMRLKLFLTPHMCVMASLICSRQLFGWLFCKVHPGAVVFAVLAAMSIQGSANLQTQWNIVGEFSNLPQEELIEWIKYSTKPDAVFAGAMPTMASVKLSALRPIVNHPHYEDAGLRARTKIVYSMYSRKAAEEVKRELIKLQVNYYILEESWCIRRSKPGCSMPEIWDVEDPANAGKPPLCNILVKESKPHFTTVFQNSVYKVLEVIEE", "length": 748, "header": "tr|A0A480QR74-1|A0A480QR74_PIG Isoform 1 of Dpy-19 like C-mannosyltransferase 1 OS=Sus scrofa OX=9823 GN=DPY19L1 PE=1 SV=1 CANONICAL=A0A480QR74-1" }, "isoforms": [ { "isoform_ac": "A0A480QR74-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QR74/entry#A0A480QR74-1", "sequence": { "sequence": "MVLQARNKHREAAPKPPQPPRASQSPLRGTPDVGAGEPGPERAPPSPRRKGAAGRKGLRAEPAAPAAGGGLGGRLAARLSGALGLRRSGRGRTWTTLLLAAFAAVLHWSHITHLFENDRHFSHLSTLEREMAFRTEMGLYYSYFKTIVEAPSFLNGVWMIMNDKLTEYPLVINTLKRFNLYPEVILASWYRIYIKIMDLIGIQTKICWTVTRGEGLSPIESCEGLGDPACFYVAVIFILNGLMMALFFIYGTYLSGSRLGGLVTVLCFFFNHGECTRVMWTPPLRESFSYPFLVLQMLLVTHILRATKVYRGSLIALCISNVFFMLPWQFAQFVLLTQIASLFAVYVVGYIDICKLRKIIYMHMISLALCFVLMFGNSMLLTSYYASSLVIIWGLLAMKPHFLKINVSELSLWVIQGCFWLFGTVILKYLTSKIFGIADDAHIGNLLTSKFFSYKDFDTLLYTCAAEFDFMEKETPLRYTKTLLLPVVLVVFIAIIRKIISDMWSVLTKQQAHIRKHQFDHGELVYHALQLLAYTVLGVLIMRLKLFLTPHMCVMASLICSRQLFGWLFCKVHPGAVVFAVLAAMSIQGSANLQTQWNIVGEFSNLPQEELIEWIKYSTKPDAVFAGAMPTMASVKLSALRPIVNHPHYEDAGLRARTKIVYSMYSRKAAEEVKRELIKLQVNYYILEESWCIRRSKPGCSMPEIWDVEDPANAGKPPLCNILVKESKPHFTTVFQNSVYKVLEVIEE", "length": 748, "header": "tr|A0A480QR74-1|A0A480QR74_PIG Isoform 1 of Dpy-19 like C-mannosyltransferase 1 OS=Sus scrofa OX=9823 GN=DPY19L1 PE=1 SV=1 CANONICAL=A0A480QR74-1" }, "locus": { "chromosome": "18", "start_pos": 38900993, "end_pos": 38801445, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086404.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086404.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062766.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062766.1" } ] } }, { "isoform_ac": "A0A5G2Q8H7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QR74/entry#A0A5G2Q8H7-1", "sequence": { "sequence": "MVLQARNKHREAAPKPPQPPRASQSPLRGTPDVGAGEPGPERAPPSPRRKGAAGRKGLRAEPAAPAAGGGLGGRLAARLSGALGLRRSGRGRTWTTLLLAAFAAVLHWSHITHLFENDRHFSHLSTLEREMAFRTEMGLYYSYFKTIVEAPSFLNGVWMIMNDKLTEYPLVINTLKRFNLYPEVILASWYRIYIKIMDLIGIQTKICWTVTRGEGLSPIESCEGLGDPACFYVAVIFILNGLMMALFFIYGTYLSGSRLGGLVTVLCFFFNHGECTRVMWTPPLRESFSYPFLVLQMLLVTHILRATKVYRGSLIALCISNVFFMLPWQFAQFVLLTQIASLFAVYVVGYIDICKLRKIIYMHMISLALCFVLMFGNSMLLTSYYASSLVIIWGLLAMKPHFLKINVSELSLWVIQGCFWLFGTVILKYLTSKIFGIADDAHIGNLLTSKFFSYKDFDTLLYTCAAEFDFMEKEVRCDFSFSFLRFYLAHSFFHKVLKIIFSFFQLVYHALQLLAYTVLGVLIMRLKLFLTPHMCVMASLICSRQLFGWLFCKVHPGAVVFAVLAAMSIQGSANLQTQWNIVGEFSNLPQEELIEWIKYSTKPDAVFAGAMPTMASVKLSALRPIVNHPHYEDAGLRARTKIVYSMYSRKAAEEVKRELIKLQVNYYILEESWCIRRSKPGCSMPEIWDVEDPANAGKPPLCNILVKESKPHFTTVFQNSVYKVLEVIEE", "length": 730, "header": "tr|A0A5G2Q8H7-1|A0A480QR74_PIG Computationally mapped isoform of Dpy-19 like C-mannosyltransferase 1 OS=Sus scrofa OX=9823 GN=DPY19L1 PE=1 SV=1 CANONICAL=A0A480QR74-1" }, "locus": { "chromosome": "18", "start_pos": 38900993, "end_pos": 38801445, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088905.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088905.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060186.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060186.1" } ] } }, { "isoform_ac": "A0A5G2QPG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QR74/entry#A0A5G2QPG7-1", "sequence": { "sequence": "MVLQARNKHREAAPKPPQPPRASQSPLGLRRSGRGRTWTTLLLAAFAAVLHWSHITHLFENDRHFSHLSTLEREMAFRTEMGLYYSYFKTIVEAPSFLNGVWMIMNDKLTEYPLVINTLKRFNLYPEVILASWYRIYIKIMDLIGIQTKICWTVTRGEGLSPIESCEGLGDPACFYVAVIFILNGLMMALFFIYGTYLSGSRLGGLVTVLCFFFNHGECTRVMWTPPLRESFSYPFLVLQMLLVTHILRATKVYRGSLIALCISNVFFMLPWQFAQFVLLTQIASLFAVYVVGYIDICKLRKIIYMHMISLALCFVLMFGNSMLLTSYYASSLVIIWGLLAMKPHFLKINVSELSLWVIQGCFWLFGTVILKYLTSKIFGIADDAHIGNLLTSKFFSYKDFDTLLYTCAAEFDFMEKETPLRYTKTLLLPVVLVVFIAIIRKIISDMWSVLTKQQAHIRKHQFDHGELVYHALQLLAYTVLGVLIMRLKLFLTPHMCVMASLICSRQLFGWLFCKVHPGAVVFAVLAAMSIQGSANLQTQWNIVGEFSNLPQEELIEWIKYSTKPDAVFAGAMPTMASVKLSALRPIVNHPHYEDAGLRARTKIVYSMYSRKAAEEVKRELIKLQVNYYILEESWCIRRSKPGCSMPEIWDVEDPANAGKPPLCNILVKESKPHFTTVFQNSVYKVLEVIEE", "length": 692, "header": "tr|A0A5G2QPG7-1|A0A480QR74_PIG Computationally mapped isoform of Dpy-19 like C-mannosyltransferase 1 OS=Sus scrofa OX=9823 GN=DPY19L1 PE=1 SV=2 CANONICAL=A0A480QR74-1" }, "locus": { "chromosome": "18", "start_pos": 38900993, "end_pos": 38801445, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082013.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082013.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066793.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066793.2" } ] } }, { "isoform_ac": "A0A5G2R5Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QR74/entry#A0A5G2R5Q8-1", "sequence": { "sequence": "RPPPARRRVSGPAAPAAGGGLGGRLAARLSGALGLRRSGRGRTWTTLLLAAFAAVLHWSHITHLFENDRHFSHLSTLEREMAFRTEMGLYYSYFKTIVEAPSFLNGVWMIMNDKLTEYPLVINTLKRFNLYPEVILASWYRIYIKIMDLIGIQTKICWTVTRGEGLSPIESCEGLGDPACFYVAVIFILNGLMMALFFIYGTYLSGSRLGGLVTVLCFFFNHGECTRVMWTPPLRESFSYPFLVLQMLLVTHILRATKVYRGSLIALCISNVFFMLPWQFAQFVLLTQIASLFAVYVVGYIDICKLRKIIYMHMISLALCFVLMFGNSMLLTSYYASSLVIIWGLLAMKPHFLKINVSELSLWVIQGCFWLFGTVILKYLTSKIFGIADDAHIGNLLTSKFFSYKDFDTLLYTCAAEFDFMEKEVRCDFSFSFLRFYLAHSFFHKVLKIIFSFFQLVYHALQLLAYTVLGVLIMRLKLFLTPHMCVMASLICSRQLFGWLFCKVHPGAVVFAVLAAMSIQGSANLQTQWNIVGEFSNLPQEELIEWIKYSTKPDAVFAGAMPTMASVKLSALRPIVNHPHYEDAGLRARTKIVYSMYSRKAAEEVKRELIKLQVNYYILEESWCIRRSKPGCSMPEIWDVEDPANAGKPPLCNILVKESKPHFTTVFQNSVYKVLEVIEE", "length": 680, "header": "tr|A0A5G2R5Q8-1|A0A480QR74_PIG Computationally mapped isoform of Dpy-19 like C-mannosyltransferase 1 OS=Sus scrofa OX=9823 GN=DPY19L1 PE=1 SV=2 CANONICAL=A0A480QR74-1" }, "locus": { "chromosome": "18", "start_pos": 38900993, "end_pos": 38801334, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074444.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074444.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072422.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072422.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8H7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8H7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525550", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525550", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A6X919-1", "protein_name": "Protein C-mannosyl-transferase DPY19L1", "gene_name": "Dpy19l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLQARSKHRDAAPRPPRSARSSPPPLSGASEVDAGELGSERTPPSPGRRGAAGRKGPRAGTAAPAPDGLAGRLAAGLHWALGLRRGRGRTWSTLLLASFAALLHWSHITHLFENDRHFSHLSTLEREMAFRTEMGLYYSYFKTIVEAPSFLNGVWMIMNDKLTEYPLVINTLKRFNLYPEVILASWYRIYTKIMDLIGIQTKICWTVTRGEGLSPIESCEGLGDPACFYVAVIFMLNGLMMALFFIYGTYLSGSRLGGVVTVLCFFFNHGECTRVMWTPPLRESFSYPFLVLQMLLVTHILRAPELCRGSLIALCISNVLFMLPWQFAQFVLLTQIASLFAVYVVGYIDTHKLQKIIYMHMISLVLCFVLMFGNSMLLTSYYASSLVIIWGMLAMKPQFLRMNVSELSLWVIQGCGWLFGTVILKSVTSRIFGIADDAHIGNLLTSKFFSYKDFDTLLYTCAAEFDFMEKETPLRYTKTLLLPVVLVTVAAIVRKIFNDMRGVVAKQRTHTRKQQFEHGELVYHALQLLAYTALGVLIMRLKLFLTPHMCVMASLICSRQLFGWLFGKVHPGAVVFAILAAMSIQGSANLQTQWNIVGEFSNLPQEELIEWIRYSTKPDAVFAGAMPTMASVKLSALRPVVNHPHYEDAGLRARTKIVYSMYSRKAPEDVKKELMKLKVNYYILEESWCIRRSKPGCSMPEIWDVEDPDNAGKTPLCNILVKDSKPHFTTVFQNSVYKVLEVLRQ", "length": 746 }, "evidence": [ { "id": "A0A480QR74", "url": "https://omabrowser.org/oma/group/A0A480QR74/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D4AD75-1", "protein_name": "Protein C-mannosyl-transferase DPY19L1", "gene_name": "Dpy19l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVLQARSKHRDAAPRPPRPARSSPPPLNGASEVAARELGPERAPPSPGRRSTASRKGPRAETAAPAPDGLAGRLAAGLHWALGLRRGRGRTWSTLLLASFAALLHWSHITQLFENDRHFSHLSTLEREMAFRTEMGLYYSYFKTIVEAPSFLSGVWMIMNDRLTEYPLVINTLKRFNLYPEVILASWYRIYTKIMDLIGIQTKICWTVTRGEGLSPIESCEGLGDPACFYVAVIFMLNGLMMALFFIYGTYLSGSRLGGLVTVLCFFFNHGECTRVMWTPPLRESFSYPFLVLQMLLVTHILRTTQLYRGSLIALCISNVFFMLPWQFAQFVLLTQIASLFAVYVVGYIDTYKLQKIIYTHMISLVLCFVLMFGNSMLLTSYYASSLVIIWGMLAMKPQFLKMNVSELSLWVIQGCCWLFGTVTLKSLTSRIFGIADDAHIGNLLTSKFFSYKDFDTLLYTCAAEFDFMEKETPLRYTKTLLLPVVLAIVAAIGRKIINDMRGVIANQETDVRKHQVDHGELVYHALQLFAYTALGILIMRLKLFLTPHMCVMASLICSRQLFGWLFGKVHPGAVVFAVLAAMSIQGSANLQTQWNIVGEFSNLPQEELIEWIRHSTKPDAVFAGAMPTMASVKLSALRPVVNHPHYEDAGLRARTKIVYSMYSRKAPEDVKKELIKLKVNYYILEESWCIRRSKPGCSMPEIWDVEDPDNAGKTPLCNILVKDSKPHFTTVFQNSVYKVLEVIRQ", "length": 746 }, "evidence": [ { "id": "A0A480QR74", "url": "https://omabrowser.org/oma/group/A0A480QR74/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2PZI1-1", "protein_name": "Protein C-mannosyl-transferase DPY19L1", "gene_name": "DPY19L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEGRPPPEGRPPPRPRTGRAPRGRRRAVFAAVLHWSHITHLFENDRHFSHLSTLEREMAFRTEMGLYYSYFKTIVEAPSFLNGVWMIMNDKLTEYPLVINTLKRFNLYPEVILASWYRIYTKIMDLIGIQTKICWTVTRGEGLSPIESCEGLGDPACFYVAVIFILNGLMMALFFIYGTYLSGSRLGGLVTVLCFFFNHGECTRVMWTPPLRESFSYPFLVLQMLLVTHILRATKLYRGSLIALCISNVFFMLPWQFAQFVLLTQIASLFAVYVVGYIDICKLRKIIYIHMISLALCFVLMFGNSMLLTSYYASSLVIIWGILAMKPHFLKINVSELSLWVIQGCFWLFGTVILKYLTSKIFGIADDAHIGNLLTSKFFSYKDFDTLLYTCAAEFDFMEKETPLRYTKTLLLPVVLVVFVAIVRKIISDMWGVLAKQQTHVRKHQFDHGELVYHALQLLAYTALGILIMRLKLFLTPHMCVMASLICSRQLFGWLFCKVHPGAIVFAILAAMSIQGSANLQTQWNIVGEFSNLPQEELIEWIKYSTKPDAVFAGAMPTMASVKLSALRPIVNHPHYEDAGLRARTKIVYSMYSRKAAEEVKRELIKLKVNYYILEESWCVRRSKPGCSMPEIWDVEDPANAGKTPLCNLLVKDSKPHFTTVFQNSVYKVLEVVKE", "length": 675 }, "evidence": [ { "id": "A0A480QR74", "url": "https://omabrowser.org/oma/group/A0A480QR74/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A480QR74", "url": "https://www.uniprot.org/uniprotkb/A0A480QR74" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A480QR74", "url": "https://www.uniprot.org/uniprotkb/A0A480QR74" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "mannosyltransferase activity", "id": "GO:0000030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000030", "evidence": [ { "database": "UniProtKB", "id": "A0A480QR74", "url": "https://www.uniprot.org/uniprotkb/A0A480QR74" } ], "pmid": "" }, { "name": "glycosyltransferase activity", "id": "GO:0016757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016757", "evidence": [ { "database": "UniProtKB", "id": "A0A480QR74", "url": "https://www.uniprot.org/uniprotkb/A0A480QR74" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein C-linked glycosylation", "id": "GO:0018103", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0018103", "evidence": [ { "database": "UniProtKB", "id": "A0A480QR74", "url": "https://www.uniprot.org/uniprotkb/A0A480QR74" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 406, "end_pos": 408, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 406, "end_pos": 408 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480QVB2-1", "uniprot_ac": "A0A480QVB2", "uniprot_id": "A0A480QVB2_PIG", "mass": { "chemical_mass": 78148.0, "monoisotopic_mass": 78148.0 }, "refseq": { "ac": "XP_020926301", "name": "NCK-interacting protein with SH3 domain", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926301" }, "gene_names": [ { "name": "NCKIPSD", "type": "recommended", "evidence": [ { "id": "A0A480QVB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QVB2" } ] }, { "name": "NCKIPSD", "type": "synonym", "evidence": [ { "id": "XP_020926301", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926301" } ] } ], "protein_names": [ { "name": "NCK interacting protein with SH3 domain", "type": "synonym", "evidence": [ { "id": "A0A480QVB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QVB2/entry#names_and_taxonomy" } ] }, { "name": "NCK-interacting protein with SH3 domain", "type": "synonym", "evidence": [ { "id": "XP_020926301", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926301" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480QVB2", "url": "https://www.uniprot.org/uniprotkb/A0A480QVB2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NCKIPSD", "url": "https://www.uniprot.org/uniprotkb/A0A480QVB2", "locus": { "chromosome": "13", "start_pos": 31363765, "end_pos": 31377672, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011364", "url": "https://www.ensembl.org/id/ENSSSCG00000011364" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011364", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011364", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11849", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11849", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524278", "url": "https://www.ncbi.nlm.nih.gov/gene/100524278", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018556", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018556", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030125", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030125", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035514", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035514", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524278", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524278", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TGFERQY", "url": "https://omabrowser.org/oma/group/TGFERQY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480QVB2", "url": "https://www.orthodb.org/?gene=A0A480QVB2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13357", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13357", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13357:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13357:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09431", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09431", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2029482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5663213", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663213", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020926301", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926301", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480QVB2", "url": "https://www.uniprot.org/uniprotkb/A0A480QVB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480QVB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QVB2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEM2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKK3", "url": "https://www.uniprot.org/uniprotkb/F1SKK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKK3-1", "url": "https://www.uniprot.org/uniprotkb/F1SKK3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYRALYAFRSAEPNALAFAAGETFLVLERSSAHWWLAARARSGETGYVPPAYLRRLQGLEQDVLQAIDRAIEAVHNAAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSAPSPAAMTSSTSDHHLDTAAARQPNGVCRAGFERQHSLPSSEYLGADGGLYQIPPQPRRAAPTTPPPPVKRRDREALVASGSGGCNTTPSGGSSVSSGSSVSSTSLDTYYTGSSSSELGPSCSPTPPPVPRRSTHTTVSQAQPPPSKVPNPEPPAEEVAVDTASAPDELEALGTLSLGTTEEKAAAETAVPRTIGAELMELVRRNTGLSHELCRVAIGVVVGHIQASVPASSPVMEQVLLSLVEGKDLSTALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEGVIRCYLEELLHILTDADPEVCKKMCKRNEFESVLALVAYYQMEHRVSLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMIFSMGEAVPYAHYEHLGTPFAQFLLSIVEDGLPLDTTEQLPDLCMNLLLALNLHLPAPDQNIIMAALSKHANVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSILKFLQDVFASPATAAIFYHTDMMALIDITVRHIADLSPGDKLRMEYLSLMHAVVRSTPYLQHRHRLPDLQATLRRILTEEEASPQCQMDRMIVREMCKEFPVLGEAPS", "length": 714, "header": "tr|A0A480QVB2-1|A0A480QVB2_PIG Isoform 1 of NCK interacting protein with SH3 domain OS=Sus scrofa OX=9823 GN=NCKIPSD PE=1 SV=1 CANONICAL=A0A480QVB2-1" }, "isoforms": [ { "isoform_ac": "A0A480QVB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QVB2/entry#A0A480QVB2-1", "sequence": { "sequence": "MYRALYAFRSAEPNALAFAAGETFLVLERSSAHWWLAARARSGETGYVPPAYLRRLQGLEQDVLQAIDRAIEAVHNAAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSAPSPAAMTSSTSDHHLDTAAARQPNGVCRAGFERQHSLPSSEYLGADGGLYQIPPQPRRAAPTTPPPPVKRRDREALVASGSGGCNTTPSGGSSVSSGSSVSSTSLDTYYTGSSSSELGPSCSPTPPPVPRRSTHTTVSQAQPPPSKVPNPEPPAEEVAVDTASAPDELEALGTLSLGTTEEKAAAETAVPRTIGAELMELVRRNTGLSHELCRVAIGVVVGHIQASVPASSPVMEQVLLSLVEGKDLSTALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEGVIRCYLEELLHILTDADPEVCKKMCKRNEFESVLALVAYYQMEHRVSLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMIFSMGEAVPYAHYEHLGTPFAQFLLSIVEDGLPLDTTEQLPDLCMNLLLALNLHLPAPDQNIIMAALSKHANVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSILKFLQDVFASPATAAIFYHTDMMALIDITVRHIADLSPGDKLRMEYLSLMHAVVRSTPYLQHRHRLPDLQATLRRILTEEEASPQCQMDRMIVREMCKEFPVLGEAPS", "length": 714, "header": "tr|A0A480QVB2-1|A0A480QVB2_PIG Isoform 1 of NCK interacting protein with SH3 domain OS=Sus scrofa OX=9823 GN=NCKIPSD PE=1 SV=1 CANONICAL=A0A480QVB2-1" }, "locus": { "chromosome": "13", "start_pos": 31377559, "end_pos": 31367294, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077538.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077538.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071634.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071634.2" } ] } }, { "isoform_ac": "A0A8W4FEM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QVB2/entry#A0A8W4FEM2-1", "sequence": { "sequence": "MYRALYAFRSAEPNALAFAAGETFLVLERSSAHWWLAARARSGETGYVPPAYLRRLQGLEQDVLQAIDRAIEAVHNAAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSAPSPAAMTSSTSDHHLDTAAARQPNGVCRAGFERQHSLPSSEYLGADGGLYQIPLLSPIPPQPRRAAPTTPPPPVKRRDREALVASGSGGCNTTPSGGSSVSSGSSVSSTSLDTYYTGSSSSELGPSCSPTPPPVPRRSTHTTVSQAQPPPSKVPNPEPPAEEVAVDTASAPDELEALGTLSLGTTEEKAAAETAVPRTIGAELMELVRRNTGLSHELCRVAIGVVVGHIQASVPASSPVMEQVLLSLVEGKDLSTALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEGVIRCYLEELLHILTDADPEVCKKMCKRNEFESVLALVAYYQMEHRVSLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMIFSMGEAVPYAHYEHLGTPFAQFLLSIVEDGLPLDTTEQLPDLCMNLLLALNLHLPAPDQNIIMAALSKHANVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSILKFLQDVFASPATAAIFYHTDMMALIDITVRHIADLSPGDKLRMEYLSLMHAVVRSTPYLQHRHRLPDLQATLRRILTEEEASPQCQMDRMIVREMCKEFPVLGEAPS", "length": 720, "header": "tr|A0A8W4FEM2-1|A0A480QVB2_PIG Computationally mapped isoform of NCK interacting protein with SH3 domain OS=Sus scrofa OX=9823 GN=NCKIPSD PE=1 SV=1 CANONICAL=A0A480QVB2-1" }, "locus": { "chromosome": "13", "start_pos": 31377559, "end_pos": 31367294, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101610.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101610.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077761.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077761.1" } ] } }, { "isoform_ac": "F1SKK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QVB2/entry#F1SKK3-1", "sequence": { "sequence": "MSRGKASAARRSWPGVLNPQTSPSLLPRPAPAQPGPSPCTARCTRSARRSPTRWRSPRARPSWCWSAAARTGGWRRGRAVARRATCRPPTCAACRKLIHHRKETLSRRGPSAPSPAAMTSSTSDHHLDTAAARQPNGVCRAGFERQHSLPSSEYLGADGGLYQIPPQPRRAAPTTPPPPVKRRDREALVASGSGGCNTTPSGGSSVSSGSSVSSTSLDTYYTGSSSSELGPSCSPTPPPVPRRSTHTTVSQAQPPPSKVPNPEPPAEEVAVDTASAPDELEALGTLSLGTTEEKAAAETAVPRTIGAELMELVRRNTGLSHELCRVAIGVVVGHIQASVPASSPVMEQVLLSLVEGKDLSTALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEGVIRCYLEELLHILTDADPEVCKKMCKRNEFESVLALVAYYQMEHRVSLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMIFSMGEAVPYAHYEHLGTPFAQFLLSIVEDGLPLDTTEQLPDLCMNLLLALNLHLPAPDQNIIMAALSKHANVKIFSEKLLLLLNRGDDPVRIFKHEPQPPHSILKFLQDVFASPATAAIFYHTDMMALIDITVRHIADLSPGDKLRMEYLSLMHAVVRSTPYLQHRHRLPDLQATLRRILTEEEASPQCQMDRMIVREMCKEFPVLGEAPS", "length": 715, "header": "tr|F1SKK3-1|A0A480QVB2_PIG Computationally mapped isoform of NCK interacting protein with SH3 domain OS=Sus scrofa OX=9823 GN=NCKIPSD PE=1 SV=4 CANONICAL=A0A480QVB2-1" }, "locus": { "chromosome": "13", "start_pos": 31377672, "end_pos": 31367294, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012442.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012442.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012117.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012117.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 235, "start_aa": "Thr", "end_pos": 235, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr235", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKK3", "url": "https://www.uniprot.org/uniprotkb/F1SKK3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524278", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524278", "resource": "KEGG Pathway" }, { "id": "R-SSC-2029482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "resource": "Reactome", "description": "Regulation of actin dynamics for phagocytic cup formation" }, { "id": "R-SSC-5663213", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663213", "resource": "Reactome", "description": "RHO GTPases Activate WASPs and WAVEs" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZWX4-1", "protein_name": "NCK interacting protein with SH3 domain", "gene_name": "Nckipsd", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLEPTHPWGGAFGSRACARVACHGAGRGERGTQGLGFPALQPSSRTQHRRGAERPGLMYRALYAFRSAEPNAMAFAAGETFLVLERSSTHWWLAARARSGETGYVPPAYLHRLQGMEQDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGTSAASASVMTPSTSDHHLDTAVSRQPNGVCRTGFERQHSLPSSEHLGTDGALYQVPPQPRRAAPATPPPPVKRRDREALVISGSGGRTAVPSGGSSVSSGSSVSSTSMDTLYTGSSPSELGPSCSPTPPPVPRRSAHTTVSQAQPSPSKAPSPEPPAEEVAAETNSAPDDLEALDALSPETTEEKPATETVVPRTIGAELMELVRRNTGLSHELCRVAIGVVVGHIQASVPASSPVMEQVLLSLVEGKDLSTALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEDVIRCYLEELLHILTDADPEVCKKMCKRSDFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALVLAMVFSMGEAVPYAHYEHLGTPFAQFLLSIVEDGLPLDATEQLPDLCMNLLLALNLHLTAPDQNVIMAALSKHTNVKIFSEKLLLLLNRGDDPVRIFRHEPQPPHSVLKFLQDVFSSAATASIFYHTDMMALIDITVRQIADLSPGDKLRMEYLSLMHAVVRSTPYLQHRHRLSDLQATLRRILTEEETSPQCQMDRMIVQEMYKEFPDLGEVPS", "length": 771 }, "evidence": [ { "id": "A0A480QVB2", "url": "https://omabrowser.org/oma/group/A0A480QVB2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ESJ4-1", "protein_name": "NCK-interacting protein with SH3 domain", "gene_name": "Nckipsd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MYRALYAFRSAEPNAMAFAAGETFLVLERSSTHWWLAARARSGETGYVPPAYLHRLQGMEQDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGTSASSATVMTPSTSDHHLDAAVSRQPNGVCRTGFERQHSLPSSEHLGTDGALYQVPPQPRRAAPTTPPPPVKRRDREALVISGSGGRTAIPSGGSSVSSGSSASSTSMDTLYTGSSPSELGPSCSPTPPPVPRRGAHTTVSQPQPSPSKAPSPEPPTEEVAAETNSTPDDLEAQDALSPETTEEKAAAETVVPRTIGAELMELVRRNTGLSHELCRVAIGVVVGHIQATVPASSPIMEQVLLSLVEGKDLSTALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEDVIRCYLEELLHILTDADPEVCKKMCKRSDFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALVLAMVFSMGEAVPYAHYEHLGTPFAQFLLSIVEDGLPMDTTEQLPDLCMNLLLALNLHLTAPEQNVIMAALSRHTNVKIFSEKLLLLLNRGDDPVRIFRHEPQPPHSVLKFLQDVFSSSATAAIFYHTDMMALIDITVRQIADLSPGDKLRMEYLSLMHAVVRSTPYLQHRHRLSDLQATLRRILTEEEASPQCQMDRMIVQEMYKEFPDLGEVPS", "length": 714 }, "evidence": [ { "id": "A0A480QVB2", "url": "https://omabrowser.org/oma/group/A0A480QVB2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "A0A480QVB2", "url": "https://www.uniprot.org/uniprotkb/A0A480QVB2" } ], "pmid": "" }, { "name": "positive regulation of neuron projection development", "id": "GO:0010976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010976", "evidence": [ { "database": "UniProtKB", "id": "A0A480QVB2", "url": "https://www.uniprot.org/uniprotkb/A0A480QVB2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "Arp2/3 complex binding", "id": "GO:0071933", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071933", "evidence": [ { "database": "UniProtKB", "id": "A0A480QVB2", "url": "https://www.uniprot.org/uniprotkb/A0A480QVB2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A480QVB2", "url": "https://www.uniprot.org/uniprotkb/A0A480QVB2" } ], "pmid": "" }, { "name": "COP9 signalosome", "id": "GO:0008180", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008180", "evidence": [ { "database": "UniProtKB", "id": "A0A480QVB2", "url": "https://www.uniprot.org/uniprotkb/A0A480QVB2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480QVB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QVB2" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 58, "start_aa": "Met", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 235 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 196, "end_pos": 198 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480QZY2-1", "uniprot_ac": "A0A480QZY2", "uniprot_id": "A0A480QZY2_PIG", "mass": { "chemical_mass": 75289.0, "monoisotopic_mass": 75289.0 }, "refseq": { "ac": "XP_013854336", "name": "zinc finger protein 256", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013854336" }, "gene_names": [ { "name": "LOC100516085", "type": "recommended", "evidence": [ { "id": "A0A480QZY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QZY2" } ] }, { "name": "LOC100516085", "type": "synonym", "evidence": [ { "id": "XP_013854336", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013854336" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A480QZY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480QZY2/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 256", "type": "synonym", "evidence": [ { "id": "XP_013854336", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013854336" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480QZY2", "url": "https://www.uniprot.org/uniprotkb/A0A480QZY2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100516085", "url": "https://www.uniprot.org/uniprotkb/A0A480QZY2", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000036554", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036554", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516085", "url": "https://www.ncbi.nlm.nih.gov/gene/100516085", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516085", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516085", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ANFKQHQ", "url": "https://omabrowser.org/oma/group/ANFKQHQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480QZY2", "url": "https://www.orthodb.org/?gene=A0A480QZY2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384:SF242", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384:SF242", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013854336", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013854336", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480QZY2", "url": "https://www.uniprot.org/uniprotkb/A0A480QZY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480QZY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QZY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAATVLWDPPQGGVNFEDIAVYFSWEEWRLLDEAQRRLYLDVMLDNYALISSLGCCCGAEGSEAPFEQIDSLGVSQARISEAALSSQETHPCGMCGPVLRDIFHLAESQEAEHHQKLLRCGACAKRFYFGASIQQHQEEQIREKPFRSSVDEALFVKSCRLLVSQKPFTCGEFEKDFPIIMGCLQQQATHAVEKPNIIAQCGSSLQSRKSHHTWGECKKALSPEHTLLQDQGVYTGRPCFVCSECGKTFRYKSSFVVHQRVHVGEGLHMCGECGKSFRQNSSLSQHRSVHTGAMQYNCSKCGKSLSHKSVIISPHTWCNGENSYVCSECSKSFTSSSALTYHQRSHTGERPYECNECGKSFISRPALRYHQRSHTGERPYECSDCGKSFTTSSNLHYHQRVHTGERPYKCSECGKSFNNRWVLIQHQRVHTGERPYECTECGKLFKYGSQLNQHQKAHTGEKPFKCSECGKSFNNRWTLIQHWRVHTGERPFECSECGKFFNRRNNLILHQRIHTGIRPYACNECGKSFTFSSSLRYHQRAHTGERPYECKECGKSFISRSDLHYHHRVHSGERPFECSECGKSFIQRNNLIIHQRVHTGERPYVCDECGKSFTCSSTLHYHQRVHTGVRPYVCSECGKSFITMSKLRCHQKGHTGERP", "length": 659, "header": "tr|A0A480QZY2-1|A0A480QZY2_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100516085 PE=3 SV=1 CANONICAL=A0A480QZY2-1" }, "isoforms": [ { "isoform_ac": "A0A480QZY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QZY2/entry#A0A480QZY2-1", "sequence": { "sequence": 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TCKLWEA", "url": "https://omabrowser.org/oma/group/TCKLWEA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22847", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22847", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22847:SF637", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22847:SF637", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A480RK91", "url": "https://www.uniprot.org/uniprotkb/A0A480RK91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480RK91-1", "url": "https://www.uniprot.org/uniprotkb/A0A480RK91-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { 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"phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480RK91", "url": "https://www.uniprot.org/uniprotkb/A0A480RK91" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { 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"id": "XP_013832987", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013832987", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480S2P2", "url": "https://www.uniprot.org/uniprotkb/A0A480S2P2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480S2P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480S2P2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1PP25", "url": "https://www.uniprot.org/uniprotkb/A0A8D1PP25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1PP25-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1PP25-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMASIWAIQAHKDQDELLEVKVEEEEDVKEEHKYTTRQDQNLQKNNTHSREVFRQHFRHFCYQETSGPREALSRLRELCHQWLRPETHTKEQILELLVLEQFLTILPEELQAWVQEQHPESGEEVVTVLEALERELDEPGYQVSVHTEEQEMFLQEVAPLGSEQEPGMSLPSVKVQLKCESPDLEAQQEQVSDVDTGNEYRNLTPKQEVSEEMKSYGNISSKFENEIAQSTGYEKTCEPQEKTEEPSGYSREDTCHENGVSLTENSDRPEQQRVCPGEKLYECDDCGKAFSQHSRLLEHQRIHTGDRPYKCEECGKTFRGRTVLIRHKVIHTGEKPYKCNECGKAFGRWSALNQHQRLHTGEKHYHCNECGKAFSQKAGLFHHLKIHTRDKPYHCTQCNKSFSRRSILTQHQGVHTGAKPYECNECGKAFVYNSSLVSHQEIHHKEKCYQCKECGKSFSQSGLIQHQRIHTGEKPYKCDVCGKAFIQRTSLIEHQRIHTGERPYKCDTCGKAFTQRSVLTEHQRIHTGERPYKCDECGNAFRGITSLIQHQRIHTGEKPYQCDECGKAFRQRKKTSYKEILLKNRCEPQAGVNLLLSSLIPEWQSSCRKDL", "length": 611, "header": "tr|A0A480S2P2-1|A0A480S2P2_PIG Isoform 1 of Zinc finger and SCAN domain-containing protein 12 OS=Sus scrofa OX=9823 GN=ZSCAN12 PE=3 SV=1 CANONICAL=A0A480S2P2-1" }, "isoforms": [ { "isoform_ac": "A0A480S2P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480S2P2/entry#A0A480S2P2-1", "sequence": { "sequence": "MMASIWAIQAHKDQDELLEVKVEEEEDVKEEHKYTTRQDQNLQKNNTHSREVFRQHFRHFCYQETSGPREALSRLRELCHQWLRPETHTKEQILELLVLEQFLTILPEELQAWVQEQHPESGEEVVTVLEALERELDEPGYQVSVHTEEQEMFLQEVAPLGSEQEPGMSLPSVKVQLKCESPDLEAQQEQVSDVDTGNEYRNLTPKQEVSEEMKSYGNISSKFENEIAQSTGYEKTCEPQEKTEEPSGYSREDTCHENGVSLTENSDRPEQQRVCPGEKLYECDDCGKAFSQHSRLLEHQRIHTGDRPYKCEECGKTFRGRTVLIRHKVIHTGEKPYKCNECGKAFGRWSALNQHQRLHTGEKHYHCNECGKAFSQKAGLFHHLKIHTRDKPYHCTQCNKSFSRRSILTQHQGVHTGAKPYECNECGKAFVYNSSLVSHQEIHHKEKCYQCKECGKSFSQSGLIQHQRIHTGEKPYKCDVCGKAFIQRTSLIEHQRIHTGERPYKCDTCGKAFTQRSVLTEHQRIHTGERPYKCDECGNAFRGITSLIQHQRIHTGEKPYQCDECGKAFRQRKKTSYKEILLKNRCEPQAGVNLLLSSLIPEWQSSCRKDL", "length": 611, "header": "tr|A0A480S2P2-1|A0A480S2P2_PIG Isoform 1 of Zinc finger and SCAN domain-containing protein 12 OS=Sus scrofa OX=9823 GN=ZSCAN12 PE=3 SV=1 CANONICAL=A0A480S2P2-1" }, "locus": { "chromosome": "7", "start_pos": 22208693, "end_pos": 22191088, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080442.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080442.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061308.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061308.1" } ] } }, { "isoform_ac": "A0A8D1PP25-1", "url": "https://www.uniprot.org/uniprotkb/A0A480S2P2/entry#A0A8D1PP25-1", "sequence": { "sequence": "MMASIWAIQAHKDQDELLEVKVEEEEDVKEEHKYTTRQDQNLQKNNTHSREVFRQHFRHFCYQETSGPREALSRLRELCHQWLRPETHTKEQILELLVLEQFLTILPEELQAWVQEQHPESGEEVVTVLEALERELDEPGYQEVAPLGSEQEPGMSLPSVKVQLKCESPDLEAQQEQVSDVDTGNEYRNLTPKQEVSEEMKSYGNISSKFENEIAQSTGYEKTCEPQEKTEEPSGYSREDTCHENGVSLTENSDRPEQQRVCPGEKLYECDDCGKAFSQHSRLLEHQRIHTGDRPYKCEECGKTFRGRTVLIRHKVIHTGEKPYKCNECGKAFGRWSALNQHQRLHTGEKHYHCNECGKAFSQKAGLFHHLKIHTRDKPYHCTQCNKSFSRRSILTQHQGVHTGAKPYECNECGKAFVYNSSLVSHQEIHHKEKCYQCKECGKSFSQSGLIQHQRIHTGEKPYKCDVCGKAFIQRTSLIEHQRIHTGERPYKCDTCGKAFTQRSVLTEHQRIHTGERPYKCDECGNAFRGITSLIQHQRIHTGEKPYQCDECGKAFRQRQNSALTQHQTTHK", "length": 572, "header": "tr|A0A8D1PP25-1|A0A480S2P2_PIG Computationally mapped isoform of Zinc finger and SCAN domain-containing protein 12 OS=Sus scrofa OX=9823 GN=ZSCAN12 PE=3 SV=1 CANONICAL=A0A480S2P2-1" }, "locus": { "chromosome": "7", "start_pos": 22208693, "end_pos": 22199232, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001307.4", "url": "https://www.ensembl.org/id/ENSSSCT00000001307.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001278.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001278.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1PP25", "url": "https://www.uniprot.org/uniprotkb/A0A8D1PP25" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152126", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152126", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A480S2P2", "url": "https://www.uniprot.org/uniprotkb/A0A480S2P2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A480S2P2", "url": "https://www.uniprot.org/uniprotkb/A0A480S2P2" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A480S2P2", "url": "https://www.uniprot.org/uniprotkb/A0A480S2P2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A480S2P2", "url": "https://www.uniprot.org/uniprotkb/A0A480S2P2" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A480S2P2", "url": "https://www.uniprot.org/uniprotkb/A0A480S2P2" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A480S2P2", "url": "https://www.uniprot.org/uniprotkb/A0A480S2P2" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A480S2P2", "url": "https://www.uniprot.org/uniprotkb/A0A480S2P2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 399, "end_pos": 401, "annotation": "n_glycosylation_sequon" }, { "start_pos": 433, "end_pos": 435, "annotation": 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"MSTTVEAEATEGGTINDGNLNMAQEQTSRRGFCSVRHGLALIVHLCNFSISTQQINMSIAMPAMVNNTALPTPLNASIEGPPTDSQDNWNETLKEVKAVAAMYDWSPEIQGIILSSPNYCSFLAPIPCGYMAEMFGVKYLTSACLLISSVLNLFIPLAADTGVTWLIVLRIVQGIAQVMVLTSQYSIWTRWAPPLERSQLITLSVSGSVLGSCTILFIGGFLCQTLGWPTIFYIFGAIGCFSSFLWFALVYDDPMNHPFISTSEKEYIVCSLAQEDSPPGWSLPIKAMIKSLPLWSILIFYFTDYWYYYIITSYTPTYISSVLEVNIRDNGILSALPYVSAYICIVLGGLLADYLFSRKILRLNTIRKLFTVIGVVIPSAFTVSLFWVRSSFGATIAFLILAFSFKSIVQSGALINFMDIAPRHGTLLRGLSQIFSYLSGTISPTVSGFLISQDSEFGWRNVFLLSFAVGMAGLFFYLIFGQAEVQDWAKGRPSPTSEQTE", "length": 501, "header": "tr|A0A480SJL0-1|A0A480SJL0_PIG Isoform 1 of Solute carrier family 17 member 4 OS=Sus scrofa OX=9823 GN=SLC17A4 PE=3 SV=1 CANONICAL=A0A480SJL0-1" }, "isoforms": [ { "isoform_ac": "A0A480SJL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SJL0/entry#A0A480SJL0-1", "sequence": { "sequence": "MSTTVEAEATEGGTINDGNLNMAQEQTSRRGFCSVRHGLALIVHLCNFSISTQQINMSIAMPAMVNNTALPTPLNASIEGPPTDSQDNWNETLKEVKAVAAMYDWSPEIQGIILSSPNYCSFLAPIPCGYMAEMFGVKYLTSACLLISSVLNLFIPLAADTGVTWLIVLRIVQGIAQVMVLTSQYSIWTRWAPPLERSQLITLSVSGSVLGSCTILFIGGFLCQTLGWPTIFYIFGAIGCFSSFLWFALVYDDPMNHPFISTSEKEYIVCSLAQEDSPPGWSLPIKAMIKSLPLWSILIFYFTDYWYYYIITSYTPTYISSVLEVNIRDNGILSALPYVSAYICIVLGGLLADYLFSRKILRLNTIRKLFTVIGVVIPSAFTVSLFWVRSSFGATIAFLILAFSFKSIVQSGALINFMDIAPRHGTLLRGLSQIFSYLSGTISPTVSGFLISQDSEFGWRNVFLLSFAVGMAGLFFYLIFGQAEVQDWAKGRPSPTSEQTE", "length": 501, "header": "tr|A0A480SJL0-1|A0A480SJL0_PIG Isoform 1 of Solute carrier family 17 member 4 OS=Sus scrofa OX=9823 GN=SLC17A4 PE=3 SV=1 CANONICAL=A0A480SJL0-1" }, "locus": { "chromosome": "7", "start_pos": 20518001, "end_pos": 20495996, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063154.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063154.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038098.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038098.3" } ] } }, { "isoform_ac": "A0A4X1VLF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SJL0/entry#A0A4X1VLF5-1", "sequence": { "sequence": "INMSIAMPAMVNNTALPTPLNASIEGPPTDSQDNWNETLKEVKAVDSPPGWSLPIKAMIKSLPLWSILIFYFTDYWYYYIITSYTPTYISSVLEVNIRDNGILSALPYVSAYICIVLGGLLADYLFSRKILRLNTIRKLFTVIGKNGGYRGGYGILRAASYSLCVCSPAPGVVIPSAFTVSLFWVRSSFGATIAFLILAFSFKSIVQSGALINFMDIAPRY", "length": 221, "header": "tr|A0A4X1VLF5-1|A0A480SJL0_PIG Computationally mapped isoform of Solute carrier family 17 member 4 OS=Sus scrofa OX=9823 GN=SLC17A4 PE=3 SV=1 CANONICAL=A0A480SJL0-1" }, "locus": { "chromosome": "7", "start_pos": 20515559, "end_pos": 20501851, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049633.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049633.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035818.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035818.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 445, "start_aa": "Thr", "end_pos": 445, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr445", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VLF5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VLF5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106504136", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504136", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A480SJL0", "url": 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of Zinc finger protein 568 OS=Sus scrofa OX=9823 GN=ZNF568 PE=3 SV=1 CANONICAL=A0A480ST08-1" }, "locus": { "chromosome": "6", "start_pos": 46116409, "end_pos": 46094413, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055356.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055356.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040316.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040316.2" } ] } }, { "isoform_ac": "A0A5G2RAW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480ST08/entry#A0A5G2RAW9-1", "sequence": { "sequence": "MTSQPLEISSGCVTVERLTQMMERRAWCSPDSALFKEEEDMTSSLERVTFKDVAVDLTQEEWQQMKPAQRNLYRDVMLENYSNLVTVGCQVTKPEVIFKLEQEEEPWVVEEEMLGRHCPERRGDRGDKFYYIETRSPLLYLILWITFLGNVFFVPL", "length": 156, "header": "tr|A0A5G2RAW9-1|A0A480ST08_PIG Computationally mapped isoform of Zinc finger protein 568 OS=Sus scrofa OX=9823 GN=ZNF568 PE=3 SV=1 CANONICAL=A0A480ST08-1" }, "locus": { "chromosome": "6", "start_pos": 46116409, "end_pos": 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"MPGSRPGPPLPAPLSPQTPMAAAARRVPVQGQVTFEDVAVCFSQEEWGLLDETQRLLYRSVMLETFSLMASLGLTSSRTHDISQLERWGEPFLSASGAMRATRPTGCWHGVQAEEAPSKQSVYAGVLRAKLHQHQQLSSREKPVRGEEGGKHSPTGSGLLRHQVAQSRGEPHRSTESTEDFHPGKRHYRCSECGKAFGQKYLLVQHQRLHTGEKPYECSECGKLFSHKSNLFIHQIVHTGERPYGCNECGKSFSRNADLIQHRRVHTGEKPFTCSECGKAFRHNSTLVQHHRIHTGVRPYECSECGKFFSFNSSLMKHQRVHTGERPYKCSECGKFYSHKSSLINHWRIHTGERPYECSECGKFFSQSSSLMQHRKVHTGEKPFKCDECGRLFSENSSLVKHQRVHTGARPYECRECGKFFRHSSSLVKHRRIHTGEMPYECSNCGKSFSQRFNLIQHQKIHSGEQS", "length": 467, "header": "tr|A0A480SWY1-1|A0A480SWY1_PIG Isoform 1 of Zinc finger protein 773 OS=Sus scrofa OX=9823 GN=ZNF773 PE=3 SV=1 CANONICAL=A0A480SWY1-1" }, "isoforms": [ { "isoform_ac": "A0A480SWY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480SWY1/entry#A0A480SWY1-1", "sequence": { "sequence": 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"MAELDIGQHCQVEHCRQRDFLPFVCDGCSGIFCLEHRSRESHSCPEVTVTSERLKSDTHTSYPCSFKECAERELVPVVCPYCEKNFCLRHRHQSDHECEKLEIPKPRMAATQKLVKDIIDSKTGETASKRRKGAKNSETAAKVALMKLKMHADGDKSLPQTERIYFQVFLPKGSKEKSKPMFFCQRWSIGKVIDFAASLASLKNDNNKLTAKKLRLCHITSGEALPLDHILETWIAKEDCPLYNGGNVILEYLNDEEQFLKNVDSYLE", "length": 268, "header": "tr|A0A480TK05-1|A0A480TK05_PIG Isoform 1 of Zinc finger AN1-type containing 1 OS=Sus scrofa OX=9823 GN=ZFAND1 PE=4 SV=1 CANONICAL=A0A480TK05-1" }, "isoforms": [ { "isoform_ac": "A0A480TK05-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TK05/entry#A0A480TK05-1", "sequence": { "sequence": "MAELDIGQHCQVEHCRQRDFLPFVCDGCSGIFCLEHRSRESHSCPEVTVTSERLKSDTHTSYPCSFKECAERELVPVVCPYCEKNFCLRHRHQSDHECEKLEIPKPRMAATQKLVKDIIDSKTGETASKRRKGAKNSETAAKVALMKLKMHADGDKSLPQTERIYFQVFLPKGSKEKSKPMFFCQRWSIGKVIDFAASLASLKNDNNKLTAKKLRLCHITSGEALPLDHILETWIAKEDCPLYNGGNVILEYLNDEEQFLKNVDSYLE", "length": 268, "header": "tr|A0A480TK05-1|A0A480TK05_PIG Isoform 1 of Zinc finger AN1-type containing 1 OS=Sus scrofa OX=9823 GN=ZFAND1 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"Chicken" }, { "uniprot_canonical_ac": "P53899-1", "protein_name": "CDC48-associated ubiquitin-like/zinc finger protein 1", "gene_name": "CUZ1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSAAIEKETGMLDVGKHCAYCRQLDFLPFHCSFCNEDFCSNHRLKEDHHCRWLLEHEEVHKTEKSPSKSRDGSSSNDEAYFKSLLPERASVRIQRVSETREPLRGSNTAKVSSTLNSKTLDKIFKFFQRNEKRKSNNKSKKNFGSSSNKIIQLANLKKIAKGDPKIPMQNRIYIWCYLVDGDETDIAKEDTRMPLYINKMWPVGRAMDYLSIQLNVKSSTLTNSSSNDKFQLCKLKEGKQVSFYNIGASLRVTNEIKDLDTLYLVHNNADEKSN", "length": 274 }, "evidence": [ { "id": "A0A480TK05", "url": "https://omabrowser.org/oma/group/A0A480TK05/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q8BFR6-1", "protein_name": "AN1-type zinc finger protein 1", "gene_name": "Zfand1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSEVNVVKERPKTDEHKSYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEKLEVAKPRMAATQKLVRDIVDAKTGGAASKGRKGAKSSGTAAKVALMKLKMHADGDKSLPQTERTYFQVYLPKGSKEKSKAMFFCLRWSIGKVVDFAASLANLRNENNKLTAKKLRLCHVPSGEALPLDHTLERWITKEECPLYNGGNVILEYLNDEEQFLKNVDSYLE", "length": 268 }, "evidence": [ { "id": "A0A480TK05", "url": "https://omabrowser.org/oma/group/A0A480TK05/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TCF1-1", "protein_name": "AN1-type zinc finger protein 1", "gene_name": "ZFAND1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAELDIGQHCQVEHCRQRDFLPFVCDDCSGIFCLEHRSRESHGCPEVTVINERLKTDQHTSYPCSFKDCAERELVAVICPYCEKNFCLRHRHQSDHECEKLEIPKPRMAATQKLVKDIIDSKTGETASKRWKGAKNSETAAKVALMKLKMHADGDKSLPQTERIYFQVFLPKGSKEKSKPMFFCHRWSIGKAIDFAASLARLKNDNNKFTAKKLRLCHITSGEALPLDHTLETWIAKEDCPLYNGGNIILEYLNDEEQFCKNVESYLE", "length": 268 }, "evidence": [ { "id": "A0A480TK05", "url": "https://omabrowser.org/oma/group/A0A480TK05/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A480TK05", "url": "https://www.uniprot.org/uniprotkb/A0A480TK05" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "A0A480TK05", "url": "https://www.uniprot.org/uniprotkb/A0A480TK05" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A480TK05", "url": "https://www.uniprot.org/uniprotkb/A0A480TK05" } ], "pmid": "" }, { "name": "proteasome binding", "id": "GO:0070628", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070628", "evidence": [ { "database": "UniProtKB", "id": "A0A480TK05", "url": "https://www.uniprot.org/uniprotkb/A0A480TK05" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of intracellular protein transport", "id": "GO:0090316", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090316", "evidence": [ { "database": "UniProtKB", "id": "A0A480TK05", "url": "https://www.uniprot.org/uniprotkb/A0A480TK05" } ], "pmid": "" }, { "name": "stress granule disassembly", "id": "GO:0035617", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035617", "evidence": [ { "database": "UniProtKB", "id": "A0A480TK05", "url": "https://www.uniprot.org/uniprotkb/A0A480TK05" } ], "pmid": "" }, { "name": "cellular response to arsenite ion", "id": "GO:1903843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903843", "evidence": [ { "database": "UniProtKB", "id": "A0A480TK05", "url": "https://www.uniprot.org/uniprotkb/A0A480TK05" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480TK05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480TK05" }, { "id": "PS51039", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51039" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AN1-type", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 52, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A481C5J5-1", "uniprot_ac": "A0A481C5J5", "uniprot_id": "A0A481C5J5_PIG", "mass": { "chemical_mass": 157233.0, "monoisotopic_mass": 157233.0 }, "refseq": {}, "gene_names": [ { "name": "ROBO2", "type": "recommended", "evidence": [ { "id": "A0A481C5J5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481C5J5" } ] } ], "protein_names": [ { "name": "Roundabout guidance receptor 2", "type": "synonym", "evidence": [ { "id": "A0A481C5J5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481C5J5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A481C5J5", "url": "https://www.uniprot.org/uniprotkb/A0A481C5J5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ROBO2", "url": "https://www.uniprot.org/uniprotkb/A0A481C5J5", "locus": { "chromosome": "13", "start_pos": 177365772, "end_pos": 179013542, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012002", "url": "https://www.ensembl.org/id/ENSSSCG00000012002" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012002", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012002", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd05726", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05726", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd07693", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07693", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20952", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20952", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517681", "url": "https://www.ncbi.nlm.nih.gov/gene/100517681", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051170", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051170", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12231", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12231", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12231:SF242", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12231:SF242", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A480TKR0", "url": "https://www.uniprot.org/uniprotkb/A0A480TKR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480TKR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TKR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481C5J5", "url": "https://www.uniprot.org/uniprotkb/A0A481C5J5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481C5J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A481C5J5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UGR5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UGR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGR5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRLMFTQLLLCGFLYVRVDGSRLRQEDFPPRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVALLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYWKKDKIRIDDKEERISIRGGKLMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEEEGVEFRCQVQGDPQPTVRWKKDDADLPRGRYDIKDDYTLRIKKAMSTDEGTYMCIAENRVGKVEASATLTVRAPPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLLFPNQPQQPNSRCSVSPTGDLTITNIQRSDAGYYICQALTVAGSILAKAQLEVTDVLTDRPPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFLGRDPRATIQEQGTLQIKNLRISDSGTYTCVATSSSGETSWSAVLDVTESGATISKNYDLNDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSAMSDPVRTQDISPPAQGVDHRQVQKELGDVLVRLHTPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSTWQNLDAKVPTERSAVLANLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEEAPSAPPQSVTVLTVGSHNSTSISVSWDPPPPDHQNGIIQEYKIWCLGNETRFHINKTVDAAIRSVIIGGLFPGIQYRVEVAASTSAGVGVKSEPQPIIIGGRNEVVITENNNSITEQITDVVKQPAFIAGIGGACWVILMGFSIWLYWRRKKRKGLSNYAVTFQRGDGGLMSNGSRPGLLNAGDPSYPWLADSWPATSLPVNNSNTGPNEIGNFGRGDVLPPVPGQGDKTATMLSDGAIYSSIDFTTKTTYNSSSQITQATPYATTQILHSNSIHELAVDLPDPQWKSSIQQKTDLMGFGYSLPDQNKGNNGGKGGKKKKNKNSSKPQKSNGSNWANVPLPPPPVQPLPGTELEHYAVEQQENGYDSDSWCPPLPVQTYLHQGMEDELEEDDDRVPTPPVRGVASSPAISFGQQSTATLTPSPREEMQPMLQTHLDELTRAYQFDIAKQTWHVQSNNQPPQPPVPPLGYMSGALISDLETDVPDDDADDEEEALEIPRPLRALEQTPGSSMDNLDSSVTGSMVNGWGSASDEDRNFSSHRSSVGSSSDGSIFASGSFAQALVAAADKAGFRLDGTSLTRTGKAFASSQRPRPTSPFSTDSNTSAALSQSQRPRPTKKHKGGRMDPQPALPHRREGMTDEETLVPYSKPSFPSPGGHSSSGTASSKGSTGPRKAEALRGSHQRNASDLLDIGYMGSNSQGQFTGEL", "length": 1439, "header": "tr|A0A481C5J5-1|A0A481C5J5_PIG Isoform 1 of Roundabout guidance receptor 2 OS=Sus scrofa OX=9823 GN=ROBO2 PE=3 SV=1 CANONICAL=A0A481C5J5-1" }, "isoforms": [ { "isoform_ac": "A0A480TKR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A481C5J5/entry#A0A480TKR0-1", "sequence": { "sequence": "MSRLMFTQLLLCGFLYVRVDGSRLRQEDFPPRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVALLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYWKKDKIRIDDKEERISIRGGKLMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEEEGVEFRCQVQGDPQPTVRWKKDDADLPRGRYDIKDDYTLRIKKAMSTDEGTYMCIAENRVGKVEASATLTVRAPPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLLFPNQPQQPNSRCSVSPTGDLTITNIQRSDAGYYICQALTVAGSILAKAQLEVTDVLTDRPPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFLGRDPRATIQEQGTLQIKNLRISDSGTYTCVATSSSGETSWSAVLDVTESGATISKNYDLNDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSAMSDPVRTQDISPPAQGVDHRQVQKELGDVLVRLHTPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSTWQNLDAKVPTERSAVLANLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEEAPSAPPQSVTVLTVGSHNSTSISVSWDPPPPDHQNGIIQEYKIWCLGNETRFHINKTVDAAIRSVIIGGLFPGIQYRVEVAASTSAGVGVKSEPQPIIIGGRNEVVITENNNSITEQITDVVKQPAFIAGIGGACWVILMGFSIWLYWRRKKRKGLSNYAVTFQRGDGGLMSNGSRPGLLNAGDPSYPWLADSWPATSLPVNNSNTGPNEIGNFGRGDVLPPVPGQGDKTATMLSDGAIYSSIDFTTKTTYNSSSQITQATPYATTQILHSNSIHELAVDLPDPQWKSSIQQKTDLMGFGYSLPDQNKGNNGGKGGKKKKNKNSSKPQKSNGSNWANVPLPPPPVQPLPGTELEHYAVEQQENGYDSDSWCPPLPVQTYLHQGMEDELEEDDDRVPTPPVRGVASSPAISFGQQSTATLTPSPREEMQPMLQTHLDELTRAYQFDIAKQTWHVQSNNQPPQPPVPPLGYMSGALISDLETDVPDDDADDEEEALEIPRPLRALEQTPGSSMDNLDSSVTGKAFASSQRPRPTSPFSTDSNTSAALSQSQRPRPTKKHKGGRMDPQPALPHRREGMTDEETLVPYSKPSFPSPGGHSSSGTASSKGSTGPRKAEALRGSHQRNASDLLDIGYMGSNSQGQFTGEL", "length": 1378, "header": "tr|A0A480TKR0-1|A0A481C5J5_PIG Computationally mapped isoform of Roundabout guidance receptor 2 OS=Sus scrofa OX=9823 GN=ROBO2 PE=3 SV=1 CANONICAL=A0A481C5J5-1" }, "locus": { "chromosome": "13", "start_pos": 177966296, "end_pos": 177372221, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027034.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027034.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022197.4", "url": "https://www.ensembl.org/id/ENSSSCP00000022197.4" } ] } }, { "isoform_ac": "A0A481C5J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A481C5J5/entry#A0A481C5J5-1", "sequence": { "sequence": "MSRLMFTQLLLCGFLYVRVDGSRLRQEDFPPRIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSRNASLEVALLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYWKKDKIRIDDKEERISIRGGKLMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEEEGVEFRCQVQGDPQPTVRWKKDDADLPRGRYDIKDDYTLRIKKAMSTDEGTYMCIAENRVGKVEASATLTVRAPPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLLFPNQPQQPNSRCSVSPTGDLTITNIQRSDAGYYICQALTVAGSILAKAQLEVTDVLTDRPPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFLGRDPRATIQEQGTLQIKNLRISDSGTYTCVATSSSGETSWSAVLDVTESGATISKNYDLNDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSAMSDPVRTQDISPPAQGVDHRQVQKELGDVLVRLHTPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSTWQNLDAKVPTERSAVLANLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEEAPSAPPQSVTVLTVGSHNSTSISVSWDPPPPDHQNGIIQEYKIWCLGNETRFHINKTVDAAIRSVIIGGLFPGIQYRVEVAASTSAGVGVKSEPQPIIIGGRNEVVITENNNSITEQITDVVKQPAFIAGIGGACWVILMGFSIWLYWRRKKRKGLSNYAVTFQRGDGGLMSNGSRPGLLNAGDPSYPWLADSWPATSLPVNNSNTGPNEIGNFGRGDVLPPVPGQGDKTATMLSDGAIYSSIDFTTKTTYNSSSQITQATPYATTQILHSNSIHELAVDLPDPQWKSSIQQKTDLMGFGYSLPDQNKGNNGGKGGKKKKNKNSSKPQKSNGSNWANVPLPPPPVQPLPGTELEHYAVEQQENGYDSDSWCPPLPVQTYLHQGMEDELEEDDDRVPTPPVRGVASSPAISFGQQSTATLTPSPREEMQPMLQTHLDELTRAYQFDIAKQTWHVQSNNQPPQPPVPPLGYMSGALISDLETDVPDDDADDEEEALEIPRPLRALEQTPGSSMDNLDSSVTGSMVNGWGSASDEDRNFSSHRSSVGSSSDGSIFASGSFAQALVAAADKAGFRLDGTSLTRTGKAFASSQRPRPTSPFSTDSNTSAALSQSQRPRPTKKHKGGRMDPQPALPHRREGMTDEETLVPYSKPSFPSPGGHSSSGTASSKGSTGPRKAEALRGSHQRNASDLLDIGYMGSNSQGQFTGEL", 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"length": 1394, "header": "tr|A0A4X1UGR5-1|A0A4X1UGR5_PIG Computationally mapped isoform of Roundabout guidance receptor 2 OS=Sus scrofa OX=9823 GN=ROBO2 PE=3 SV=1 CANONICAL=A0A481C5J5-1" }, "locus": { "chromosome": "13", "start_pos": 179013542, "end_pos": 177372221, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060876.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060876.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050646.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050646.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 546, "start_aa": "Thr", "end_pos": 546, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr546", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480TKR0", "url": "https://www.uniprot.org/uniprotkb/A0A480TKR0" } ], "reference": [ { "type": 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"MKETDREAVATAVQRVAGMLQRPDQLDKVEQYRRREARKKASVEARLKAAIQSQLDGVRTGLSQLHSALSDVGAIQRSLADVSKDWRQSISTIESLRDVKEAVVRHSQLAAAVENLKNIFSVPEIVRETQDLIEQGALLQAHRKLMDLECSRDGLMCEQYRMDSGNTRDMTLIHSYFGSTQGLSDELAKQLWMVLQRSLVTVRRDPTLLVSVVRIIEREEKIDRRILDRKKQTGFVPPGRPKSWKEKMFAVLDRTVTTRIEGTQADTRESDRMWLVRHLEIIRKYVLDDLIVAKNLMAQCFPPHYDIFRNLLHMYHQALSTRMQELASEDLEANEIVSLLTWVLNTYTSTEMMGNAELAPEVDVGLLEPLLSPSVVSELLDTYMSTLTSNIIGWLRKALETDKKDWVKETEPEADQDGYYQTTLPAIVFQMFEQNLQVAAQISEDLKTKVLVLCLQQMNSFLSRYKEEAQLYKEEHLRNRQQPHCYVQYMVAIINNCQTFKESIVSLKRKYLKHEAEEGAALSQLSMDGVLDAIAKDGCSGLLEEVFLDLEQHLNELMTKKWLLGSNAVDIICVTVEDYFNDFAKIKKPYKKRMTAEAHRRVVVEYLRAVMQKRISFRSAEERKEGAERMVREAEQLRFLFRKLASGFGEDMDGYCDTIVAVAEVIKLTDPSLLYLEVSTLVSKYPDIRDDHIGALLAMRGDATRDMRQTIIETLEQGPAQASPDHVPIFRDIVVPSLNVAKLLK", "length": 745, "header": "tr|A0A480TWJ1-1|A0A480TWJ1_PIG Isoform 1 of Exocyst complex component 3 OS=Sus scrofa OX=9823 GN=EXOC3 PE=3 SV=1 CANONICAL=A0A480TWJ1-1" }, "isoforms": [ { "isoform_ac": "A0A480TWJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TWJ1/entry#A0A480TWJ1-1", "sequence": { "sequence": "MKETDREAVATAVQRVAGMLQRPDQLDKVEQYRRREARKKASVEARLKAAIQSQLDGVRTGLSQLHSALSDVGAIQRSLADVSKDWRQSISTIESLRDVKEAVVRHSQLAAAVENLKNIFSVPEIVRETQDLIEQGALLQAHRKLMDLECSRDGLMCEQYRMDSGNTRDMTLIHSYFGSTQGLSDELAKQLWMVLQRSLVTVRRDPTLLVSVVRIIEREEKIDRRILDRKKQTGFVPPGRPKSWKEKMFAVLDRTVTTRIEGTQADTRESDRMWLVRHLEIIRKYVLDDLIVAKNLMAQCFPPHYDIFRNLLHMYHQALSTRMQELASEDLEANEIVSLLTWVLNTYTSTEMMGNAELAPEVDVGLLEPLLSPSVVSELLDTYMSTLTSNIIGWLRKALETDKKDWVKETEPEADQDGYYQTTLPAIVFQMFEQNLQVAAQISEDLKTKVLVLCLQQMNSFLSRYKEEAQLYKEEHLRNRQQPHCYVQYMVAIINNCQTFKESIVSLKRKYLKHEAEEGAALSQLSMDGVLDAIAKDGCSGLLEEVFLDLEQHLNELMTKKWLLGSNAVDIICVTVEDYFNDFAKIKKPYKKRMTAEAHRRVVVEYLRAVMQKRISFRSAEERKEGAERMVREAEQLRFLFRKLASGFGEDMDGYCDTIVAVAEVIKLTDPSLLYLEVSTLVSKYPDIRDDHIGALLAMRGDATRDMRQTIIETLEQGPAQASPDHVPIFRDIVVPSLNVAKLLK", "length": 745, "header": "tr|A0A480TWJ1-1|A0A480TWJ1_PIG Isoform 1 of Exocyst complex component 3 OS=Sus scrofa OX=9823 GN=EXOC3 PE=3 SV=1 CANONICAL=A0A480TWJ1-1" }, "locus": { "chromosome": "16", "start_pos": 79728843, "end_pos": 79706680, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040823.2", "url": "https://www.ensembl.org/id/ENSSSCT00000040823.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037660.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037660.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480TWJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480TWJ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624948", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624948", "resource": "KEGG Pathway" }, { "id": "R-SSC-5620916", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620916", "resource": "Reactome", "description": "VxPx cargo-targeting to cilium" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "exocyst localization", "id": "GO:0051601", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051601", "evidence": [ { "database": "UniProtKB", "id": "A0A480TWJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480TWJ1" } ], "pmid": "" }, { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A480TWJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480TWJ1" } ], "pmid": "" }, { "name": "exocytosis", "id": "GO:0006887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006887", "evidence": [ { "database": "UniProtKB", "id": "A0A480TWJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480TWJ1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A480TWJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480TWJ1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A480TWJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480TWJ1" } ], "pmid": "" }, { "name": "growth cone", "id": "GO:0030426", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030426", "evidence": [ { "database": "UniProtKB", "id": "A0A480TWJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480TWJ1" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A480TWJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480TWJ1" } ], "pmid": "" }, { "name": "midbody", "id": "GO:0030496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030496", "evidence": [ { "database": "UniProtKB", "id": "A0A480TWJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480TWJ1" } ], "pmid": "" }, { "name": "exocyst", "id": "GO:0000145", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000145", "evidence": [ { "database": "UniProtKB", "id": "A0A480TWJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480TWJ1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "SNARE binding", "id": "GO:0000149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000149", "evidence": [ { "database": "UniProtKB", "id": "A0A480TWJ1", "url": "https://www.uniprot.org/uniprotkb/A0A480TWJ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480U2S8-1", "uniprot_ac": "A0A480U2S8", "uniprot_id": "A0A480U2S8_PIG", "mass": { "chemical_mass": 39352.0, "monoisotopic_mass": 39352.0 }, "refseq": { "ac": "XP_003356314", "name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356314" }, "gene_names": [ { "name": "SNRNP40", "type": "recommended", "evidence": [ { "id": "A0A480U2S8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8" } ] }, { "name": "SNRNP40", "type": "synonym", "evidence": [ { "id": "XP_003356314", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356314" } ] } ], "protein_names": [ { "name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "type": "recommended", "evidence": [ { "id": "A0A480U2S8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8/entry#names_and_taxonomy" } ] }, { "name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "type": "synonym", "evidence": [ { "id": "XP_003356314", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356314" } ] }, { "name": "WD repeat-containing protein 57", "type": "synonym", "evidence": [ { "id": "A0A480U2S8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Required for pre-mRNA splicing as component of the activated spliceosome. Component of the U5 small nuclear ribonucleoprotein (snRNP) complex and the U4/U6-U5 tri-snRNP complex, building blocks of the spliceosome. As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs.", "evidence": [ { "database": "UniProtKB", "id": "F1SVA6", "url": "https://www.uniprot.org/uniprotkb/F1SVA6#function" }, { "database": "UniProtKB", "id": "ARBA00057342", "url": "https://www.uniprot.org/uniprotkb/ARBA00057342#function" }, { "database": "UniProtKB", "id": "A0A480U2S8", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480U2S8", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SNRNP40", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8", "locus": { "chromosome": "6", "start_pos": 87839337, "end_pos": 87879570, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003596", "url": "https://www.ensembl.org/id/ENSSSCG00000003596" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003596", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003596", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100624754", "url": "https://www.ncbi.nlm.nih.gov/gene/100624754", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052234", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052234", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056551", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056551", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100624754", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624754", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IWDIRPY", "url": "https://omabrowser.org/oma/group/IWDIRPY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480U2S8", "url": "https://www.orthodb.org/?gene=A0A480U2S8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44006", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44006", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44006:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44006:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23098", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23098", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003356314", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356314", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480U2S8", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480U2S8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VZU3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VZU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZU3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAN3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAN3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SVA6", "url": "https://www.uniprot.org/uniprotkb/F1SVA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SVA6-1", "url": "https://www.uniprot.org/uniprotkb/F1SVA6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ", "length": 358, "header": "tr|A0A480U2S8-1|A0A480U2S8_PIG Isoform 1 of U5 small nuclear ribonucleoprotein 40 kDa protein OS=Sus scrofa OX=9823 GN=SNRNP40 PE=1 SV=1 CANONICAL=A0A480U2S8-1" }, "isoforms": [ { "isoform_ac": "A0A480U2S8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8/entry#A0A480U2S8-1", "sequence": { "sequence": "MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ", "length": 358, "header": "tr|A0A480U2S8-1|A0A480U2S8_PIG Isoform 1 of U5 small nuclear ribonucleoprotein 40 kDa protein OS=Sus scrofa OX=9823 GN=SNRNP40 PE=1 SV=1 CANONICAL=A0A480U2S8-1" }, "locus": { "chromosome": "6", "start_pos": 87879540, "end_pos": 87839783, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096410.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096410.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075865.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075865.1" } ] } }, { "isoform_ac": "A0A4X1VZU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8/entry#A0A4X1VZU3-1", "sequence": { "sequence": "VILISARFSGGPWLIAVLLCLFAVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ", "length": 122, "header": "tr|A0A4X1VZU3-1|A0A480U2S8_PIG Computationally mapped isoform of U5 small nuclear ribonucleoprotein 40 kDa protein OS=Sus scrofa OX=9823 GN=SNRNP40 PE=1 SV=1 CANONICAL=A0A480U2S8-1" }, "locus": { "chromosome": "6", "start_pos": 87847174, "end_pos": 87839783, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067981.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067981.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069622.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069622.1" } ] } }, { "isoform_ac": "A0A8W4FAN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8/entry#A0A8W4FAN3-1", "sequence": { "sequence": "MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRWLSTLTNQSFSQHPVTRDCIWGRFSEDMEWKTLQGCLTLRPQCEWHQMMPKPASSLQMKIITSKEQEEVAIVQQPHVSHFTRMIKASLQWPLKTTCQISGTVWFFSFF", "length": 341, "header": "tr|A0A8W4FAN3-1|A0A480U2S8_PIG Computationally mapped isoform of U5 small nuclear ribonucleoprotein 40 kDa protein OS=Sus scrofa OX=9823 GN=SNRNP40 PE=1 SV=1 CANONICAL=A0A480U2S8-1" }, "locus": { "chromosome": "6", "start_pos": 87879540, "end_pos": 87839533, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104999.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104999.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075352.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075352.1" } ] } }, { "isoform_ac": "F1SVA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8/entry#F1SVA6-1", "sequence": { "sequence": "MIEQQKRKGPELPLVPVKRQRHELLLGAAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ", "length": 339, "header": "tr|F1SVA6-1|A0A480U2S8_PIG Computationally mapped isoform of U5 small nuclear ribonucleoprotein 40 kDa protein OS=Sus scrofa OX=9823 GN=SNRNP40 PE=1 SV=4 CANONICAL=A0A480U2S8-1" }, "locus": { "chromosome": "6", "start_pos": 87879540, "end_pos": 87839783, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003991.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003991.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003900.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003900.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VZU3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VZU3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624754", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624754", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A944-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "Snrnp40", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLEIDWLLSSGSSGGRTQLKPIAQRLLQAARLLAAPRVVVAAMIEQQKRKGPELPLVPVKRPRHELLLGAAGSGPGAGQQQATPGALLQTGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWSVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ", "length": 400 }, "evidence": [ { "id": "A0A480U2S8", "url": "https://omabrowser.org/oma/group/A0A480U2S8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MLP7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ", "length": 358 }, "evidence": [ { "id": "A0A480U2S8", "url": "https://omabrowser.org/oma/group/A0A480U2S8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O22826-1", "protein_name": "Transducin/WD40 repeat-like superfamily protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEIMSRENETALSGPRPMEWSTVPHSASQGPGPNGKNRTSSLEAPIMLLSGHPSAVYTMKFNPAGTLIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMVHIWDTTSRRTIYKLPGHTGSVNECVFHPTEPIIGSCSSDKNIYLGEI", "length": 343 }, "evidence": [ { "id": "A0A480U2S8", "url": "https://omabrowser.org/oma/group/A0A480U2S8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q55AR8-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "snrnp40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENKRKQKDEIVLVNGSNDTTPNKKQKNELQVVSSGGGREIILGTERTSKLEHPIMQLIGHKGEIYSCKFNSYGTALASGGSDKEIFLWNVYGECINYSVLKGHKGTILELHWSTDSNEIYTACTDKSIGVWDSNKGELIKRIREHSGVVNSCCPARRGPPLVASGSDDRSARIFDTRSKGSTHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQEDPLYTLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEKNLIKSSWSIDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNEPIIASCSSDKTIYLGEIKP", "length": 355 }, "evidence": [ { "id": "A0A480U2S8", "url": "https://omabrowser.org/oma/group/A0A480U2S8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q6PE01-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "Snrnp40", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIEQQKRKGPELPLVPVKRPRHELLLGAAGAGPGAGPQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ", "length": 358 }, "evidence": [ { "id": "A0A480U2S8", "url": "https://omabrowser.org/oma/group/A0A480U2S8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MIEQQKRKGPELPLVPVKRQRHELLLGAGSGPGAGQQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEIQ", "length": 357 }, "evidence": [ { "id": "A0A480U2S8", "url": "https://omabrowser.org/oma/group/A0A480U2S8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VPL0-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "Dmel\\CG3436", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGTKRPNNSVILAQEAKRSKNDLMAYTNRDKALLESGVRRTSNLQAPIMQLEGHEGEIFTAEFHPEGELLLSSGFDRQIYIWQVYEDCENVMAMSGHSGAVMEAHFTPDGSHIFTCSTDKTLAFWDIATGQRQRRFKGHGNFVNSVQGSRRGQQLLCSGSDDRTIKIWDARKKHAAHTLESPFQVTAVCFGDTGEQVISGGIDNEVKIWDIRKQAVLHHLRGHSDTITGMSLSPEGDFILTNAMDNTLRVWDVRPYAPGERCVKVFQGHQHNFEKNLLRCAWSPGSDKITSGSADRHVYIWDVNTRRILYKLPGHNGSVNAVDFSPKEPLILSGSSDKTLYLGEIDE", "length": 347 }, "evidence": [ { "id": "A0A480U2S8", "url": "https://omabrowser.org/oma/group/A0A480U2S8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "RNA splicing, via transesterification reactions", "id": "GO:0000375", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000375", "evidence": [ { "database": "UniProtKB", "id": "A0A480U2S8", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8" } ], "pmid": "" }, { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "A0A480U2S8", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "A0A480U2S8", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "A0A480U2S8", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8" } ], "pmid": "" }, { "name": "U2-type catalytic step 2 spliceosome", "id": "GO:0071007", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071007", "evidence": [ { "database": "UniProtKB", "id": "A0A480U2S8", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8" } ], "pmid": "" }, { "name": "U5 snRNP", "id": "GO:0005682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005682", "evidence": [ { "database": "UniProtKB", "id": "A0A480U2S8", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8" } ], "pmid": "" }, { "name": "spliceosomal complex", "id": "GO:0005681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005681", "evidence": [ { "database": "UniProtKB", "id": "A0A480U2S8", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480U2S8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480U2S8" }, { "id": "PF23098", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23098" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nucleolar protein 10-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 115, "end_pos": 265, "start_aa": "Glu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 203, "end_pos": 205 }, { "start_pos": 78, "end_pos": 80 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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subunit lysine methyltransferase OS=Sus scrofa OX=9823 GN=ETFBKMT PE=3 SV=1 CANONICAL=A0A480U871-1" }, "locus": { "chromosome": "5", "start_pos": 42573716, "end_pos": 42570365, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044390.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044390.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046895.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046895.3" } ] } }, { "isoform_ac": "A0A5G2QUM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480U871/entry#A0A5G2QUM1-1", "sequence": { "sequence": "MALCPGWRAFALFPFNRCGVLGKAVRSTGLPLFPWGHCPWRGTGSFLDPEMKAFLEEHTEVTRSGSLTPEIQLRLLTPRCKFWWERADLWPHSDPYWAIYWPGGQALSSCRNGYYTKL", "length": 118, "header": "tr|A0A5G2QUM1-1|A0A480U871_PIG Computationally mapped isoform of Electron transfer flavoprotein beta subunit lysine methyltransferase OS=Sus scrofa OX=9823 GN=ETFBKMT PE=3 SV=1 CANONICAL=A0A480U871-1" }, "locus": { "chromosome": "5", "start_pos": 42573716, "end_pos": 42570678, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084347.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084347.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061866.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061866.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUM1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110260714", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260714", "resource": "KEGG Pathway" }, { "id": "R-SSC-8876725", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876725", "resource": "Reactome", "description": "Protein methylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MGD9-1", "protein_name": "Electron transfer flavoprotein beta subunit lysine methyltransferase", "gene_name": "Etfbkmt", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": 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"url": "https://omabrowser.org/oma/group/A0A480U871/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BH46-1", "protein_name": "Electron transfer flavoprotein beta subunit lysine methyltransferase", "gene_name": "ETFBKMT", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALSPGWRVFASFPMNRYVVLWKAVRSSGFPLFPWGHCPWRGTGSLLDPKMKAFLEENTEVTSSGSLTPEIRLRLLTPRCKFWWERADLWPLRDPYWAIYWPGGQALSRYLLDNPDVVRGKSVLDIGSGCGATAIAAKMSGALRILANDIDPIAGMAITLNCELNQLNPFPILIKNILDLEQDKWDIVVLGDMFYDEDLADSLLQWLKNCFETHRTQVLIGDPGRPQFTGHSIQHQLHKVAEYSLPEPTRQDNNGLTISTVWQFQP", "length": 266 }, "evidence": [ { "id": "A0A480U871", "url": "https://omabrowser.org/oma/group/A0A480U871/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6P7Q0-1", "protein_name": "Electron transfer flavoprotein beta subunit lysine methyltransferase", "gene_name": "Etfbkmt", "tax_id": 10116, "organism": "Rattus 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480URP4-1", "uniprot_ac": "A0A480URP4", "uniprot_id": "A0A480URP4_PIG", "mass": { "chemical_mass": 61902.0, "monoisotopic_mass": 61902.0 }, "refseq": { "ac": "XP_003483624", "name": "dihydropyrimidinase-related protein 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483624" }, "gene_names": [ { "name": "DPYSL4", "type": "recommended", "evidence": [ { "id": "A0A480URP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4" } ] }, { "name": "DPYSL4", "type": "synonym", "evidence": [ { "id": "XP_003483624", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483624" } ] } ], "protein_names": [ { "name": "Dihydropyrimidinase-related protein 4", "type": "recommended", "evidence": [ { "id": "A0A480URP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4/entry#names_and_taxonomy" } ] }, { "name": "Collapsin response mediator protein 3", "type": "synonym", "evidence": [ { "id": "A0A480URP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4/entry#names_and_taxonomy" } ] }, { "name": "UNC33-like phosphoprotein 4", "type": "synonym", "evidence": [ { "id": "A0A480URP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4/entry#names_and_taxonomy" } ] }, { "name": "dihydropyrimidinase-related protein 4", "type": "synonym", "evidence": [ { "id": "XP_003483624", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483624" } ] } ], "function": [ { "annotation": "Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance, neuronal growth cone collapse and cell migration.", "evidence": [ { "database": "UniProtKB", "id": "A0A480URP4", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4#function" }, { "database": "UniProtKB", "id": "ARBA00025548", "url": "https://www.uniprot.org/uniprotkb/ARBA00025548#function" }, { "database": "UniProtKB", "id": "A0A8W4FN55", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN55#function" }, { "database": "UniProtKB", "id": "A0A5G2QSW3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSW3#function" }, { "database": "UniProtKB", "id": "F1SDI9", "url": "https://www.uniprot.org/uniprotkb/F1SDI9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480URP4", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DPYSL4", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4", "locus": { "chromosome": "14", "start_pos": 140511733, "end_pos": 140497457, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010762", "url": "https://www.ensembl.org/id/ENSSSCG00000010762" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010762", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010762", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01314", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01314", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512868", "url": "https://www.ncbi.nlm.nih.gov/gene/100512868", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011059", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011059", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011778", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011778", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512868", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512868", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FGFHFGI", "url": "https://omabrowser.org/oma/group/FGFHFGI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480URP4", "url": "https://www.orthodb.org/?gene=A0A480URP4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11647", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11647", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11647:SF55", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11647:SF55", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01979", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01979", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-399956", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399956", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003483624", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483624", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480URP4", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480URP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSW3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSW3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSW3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FN55", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FN55-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN55-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDI9", "url": "https://www.uniprot.org/uniprotkb/F1SDI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDI9-1", "url": "https://www.uniprot.org/uniprotkb/F1SDI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSFQGKKSIPRLTSDRLLIRGGKIVNHDQSFHADLYVEDGLIKQIGENLVVPGGIKTLDARGLMVLPGGVDVHTRLQMPVLGMAPADDFCQGTKAALAGGTTMILDHVFPDVGGSLLAAYEQWRERADREACCDYSLHVDVPRWHERAREELEALVKDKGVNSFLVFMSYKDRYQCTDGQMYEIFSLLRDLGAVAQVHAENGDIVEEEQKRLLELGITGPEGHVLSHPEEVEAEAVFRAITIAKQANCPLYVTKVMSKGAADVIAQAKRRGVVVFGEPITASLGADGSHHWSKNWAKAAAFVTSPPISPDPTTMEHLASLMSSGDLQVTGSAHCTFTTAQKAVGKDNFTLIPEGTNGVEERLSVVWDRCVASGKMDENEFVAVTSTNAAKIFNFYPRKGRVAVGSDADLVIWNPKATKTISAKSHNLNVEYNIFEGVECRGAPTVVISQGRVVLEDGALSVTPGTGRFVPRKTFPDFVYKRIKARNRLAEIHGVPRGLYDGPVHEVVVPAKPGGGAQARASCPGKIPVPPVRNLHQSGFSLSGSQADDHIARRTAQKIMAPPGGRSNITSLS", "length": 572, "header": "tr|A0A480URP4-1|A0A480URP4_PIG Isoform 1 of Dihydropyrimidinase-related protein 4 OS=Sus scrofa OX=9823 GN=DPYSL4 PE=1 SV=1 CANONICAL=A0A480URP4-1" }, "isoforms": [ { "isoform_ac": "A0A480URP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4/entry#A0A480URP4-1", "sequence": { "sequence": "MSFQGKKSIPRLTSDRLLIRGGKIVNHDQSFHADLYVEDGLIKQIGENLVVPGGIKTLDARGLMVLPGGVDVHTRLQMPVLGMAPADDFCQGTKAALAGGTTMILDHVFPDVGGSLLAAYEQWRERADREACCDYSLHVDVPRWHERAREELEALVKDKGVNSFLVFMSYKDRYQCTDGQMYEIFSLLRDLGAVAQVHAENGDIVEEEQKRLLELGITGPEGHVLSHPEEVEAEAVFRAITIAKQANCPLYVTKVMSKGAADVIAQAKRRGVVVFGEPITASLGADGSHHWSKNWAKAAAFVTSPPISPDPTTMEHLASLMSSGDLQVTGSAHCTFTTAQKAVGKDNFTLIPEGTNGVEERLSVVWDRCVASGKMDENEFVAVTSTNAAKIFNFYPRKGRVAVGSDADLVIWNPKATKTISAKSHNLNVEYNIFEGVECRGAPTVVISQGRVVLEDGALSVTPGTGRFVPRKTFPDFVYKRIKARNRLAEIHGVPRGLYDGPVHEVVVPAKPGGGAQARASCPGKIPVPPVRNLHQSGFSLSGSQADDHIARRTAQKIMAPPGGRSNITSLS", "length": 572, "header": "tr|A0A480URP4-1|A0A480URP4_PIG Isoform 1 of Dihydropyrimidinase-related protein 4 OS=Sus scrofa OX=9823 GN=DPYSL4 PE=1 SV=1 CANONICAL=A0A480URP4-1" }, "locus": { "chromosome": "14", "start_pos": 140510976, "end_pos": 140497672, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104141.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104141.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078527.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078527.1" } ] } }, { "isoform_ac": "A0A5G2QSW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4/entry#A0A5G2QSW3-1", "sequence": { "sequence": "MRFPWQPASRPPPWTVQPRHRELFVRDKAAQPRRWQGAPGGRTPPGGRSDRLLIRGGKIVNHDQSFHADLYVEDGLIKQIGENLVVPGGIKTLDARGLMVLPGGVDVHTRLQMPVLGMAPADDFCQGTKAALAGGTTMILDHVFPDVGGSLLAAYEQWRERADREACCDYSLHVDVPRWHERAREELEALVKDKGVNSFLVFMSYKDRYQCTDGQMYEIFSLLRDLGAVAQVHAENGDIVEEEQKRLLELGITGPEGHVLSHPEEVEAEAVFRAITIAKQANCPLYVTKVMSKGAADVIAQAKRRGVVVFGEPITASLGADGSHHWSKNWAKAAAFVTSPPISPDPTTMEHLASLMSSGDLQVTGSAHCTFTTAQKAVGKDNFTLIPEGTNGVEERLSVVWDRCVASGKMDENEFVAVTSTNAAKIFNFYPRKGRVAVGSDADLVIWNPKATKTISAKSHNLNVEYNIFEGVECRGAPTVVISQGRVVLEDGALSVTPGTGRFVPRKTFPDFVYKRIKARNRLAEIHGVPRGLYDGPVHEVVVPAKPGGGAQARASCPGKIPVPPVRNLHQSGFSLSGSQADDHIARRTAQKIMAPPGGRSNITSLS", "length": 607, "header": "tr|A0A5G2QSW3-1|A0A480URP4_PIG Computationally mapped isoform of Dihydropyrimidinase-related protein 4 OS=Sus scrofa OX=9823 GN=DPYSL4 PE=1 SV=1 CANONICAL=A0A480URP4-1" }, "locus": { "chromosome": "14", "start_pos": 140510976, "end_pos": 140498093, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069426.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069426.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068021.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068021.1" } ] } }, { "isoform_ac": "A0A8W4FN55-1", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4/entry#A0A8W4FN55-1", "sequence": { "sequence": "MSFQGKKSIPRLTSDRLLIRGGKIVNHDQSFHADLYVEDGLIKQIGENLVVPGGIKTLDARGLMVLPGGVDVHTRLQMPVLGMAPADDFCQGTKAALAGGTTMILDHVFPDVGGSLLAAYEQWRERADREACCDYSLHVDVPRWHERAREELEALVKDKGVNSFLVFMSYKDRYQCTDGQMYEIFSLLRDLGAVAQVHAENGDIVEEVEAEAVFRAITIAKQANCPLYVTKVMSKGAADVIAQAKRRGVVVFGEPITASLGADGSHHWSKNWAKAAAFVTSPPISPDPTTMEHLASLMSSGDLQVTGSAHCTFTTAQKAVGKDNFTLIPEGTNGVEERLSVVWDRCVASGKMDENEFVAVTSTNAAKIFNFYPRKGRVAVGSDADLVIWNPKATKTISAKSHNLLAEIHGVPRGLYDGPVHEVVVPAKPGGGAQARASCPGKIPVPPVRNLHQSGFSLSGSQADDHIARRTAQKIMAPPGGRSNITSLS", "length": 489, "header": "tr|A0A8W4FN55-1|A0A480URP4_PIG Computationally mapped isoform of Dihydropyrimidinase-related protein 4 OS=Sus scrofa OX=9823 GN=DPYSL4 PE=1 SV=1 CANONICAL=A0A480URP4-1" }, "locus": { "chromosome": "14", "start_pos": 140510976, "end_pos": 140497672, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092134.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092134.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080921.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080921.1" } ] } }, { "isoform_ac": "F1SDI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4/entry#F1SDI9-1", "sequence": { "sequence": "MSFQGKKSIPRLTSDRLLIRGGKIVNHDQSFHADLYVEDGLIKQIGENLVVPGGIKTLDARGLMVLPGGVDVHTRLQMPVLGMAPADDFCQGTKAALAGGTTMILDHVFPDVGGSLLAAYEQWRERADREACCDYSLHVDVPRWHERAREELEALVKDKGVNSFLVFMSYKDRYQCTDGQMYEIFSLLRDLGAVAQVHAENGDIVEEEQKRLLELGITGPEGHVLSHPEEVEAEAVFRAITIAKQANCPLYVTKVMSKGAADVIAQAKRRGVVVFGEPITASLGADGSHHWSKNWAKAAAFVTSPPISPDPTTMEHLASLMSSGDLQVTGSAHCTFTTAQKAVGKDNFTLIPEGTNGVEERLSVVWDRCVASGKMDENEFVAVTSTNAAKIFNFYPRKGRVAVGSDADLVIWNPKATKTISAKSHNLNVEYNIFEGVECRGAPTVVISQGRVVLEDGALSVTPGTGRFVPRKTFPDFVYKRIKARNRLAEIHGVPRGLYDGPVHEVVVPAKPGGGAQARASCPGKIPVPPVRNLHQSGFSLSGELSLGSQPLWDLGPRGSPPASPSRPAADTPALASRVRPVRKGPGGVSAQLPGLASGCAPRMLWHTDSNRSTQVSLHTRARPPPNPPRCLKPMGPRVCAPSSSSHCRPFCRISGRRPHRQAHSAEDHGATWRPLQHHLTVLGAAGAACCPPCRPRSIPFTDPVLNGAGLTFHPGNSPPGAPGPVAGSPRRRGRIWGGFTARARGLDAGVGTAQVALSPGAGCPRKTGASRDAQGRGGRLKDWGAAPWSPPLITAPEAPSSPACSHRPRRSLSPAASMQGEPPHPRAAVTSGTHQEPCRAASGRTLQQTHLYAFPRTKPPLASRPPPGNCRPL", "length": 874, "header": "tr|F1SDI9-1|A0A480URP4_PIG Computationally mapped isoform of Dihydropyrimidinase-related protein 4 OS=Sus scrofa OX=9823 GN=DPYSL4 PE=1 SV=4 CANONICAL=A0A480URP4-1" }, "locus": { "chromosome": "14", "start_pos": 140511551, "end_pos": 140497672, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011774.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011774.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011472.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011472.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 462, "start_aa": "Thr", "end_pos": 462, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr462", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSW3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSW3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512868", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512868", "resource": "KEGG Pathway" }, { "id": "R-SSC-399956", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399956", "resource": "Reactome", "description": "CRMPs in Sema3A signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M9Q8F2-1", "protein_name": "Dihydropyrimidinase-related protein 4 isoform X1", "gene_name": "dpysl4", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSERRLLPRDDDQGSLLSRLGTDSPKPRVKFGGMFCNIEGAYENKTLNFESYSPSSVRRNPGGRVDDQRDSFSDTSSISEFSSASYAAPSRTHAGGSRAQTLVQTARVHNGRRESDKLIIKGGKIVNDDQSFYADIYVEDGIIKQIGENLIVPTGVKTVDAYGHIVIPGGIDVNTCLQAPHLGMSPADDFYHGTRAALAGGTTMIIDHVVPEPGSSLLSAFDQWKDTADKRSCCDYSLHIDITRWHDGLFEELESLVKDKGVNSFLIFMAYKDKFQSSDTQIYEMFSAMRELGAIAQVHAENGDIIEEEQKKLLDLGITGPEGHVLSHPEEVETEAVYRAITIAKQANCPLYITKVMSKPAADLIAKARKKGMVIYGEPIAASLGTDGSHYWSKNWAEAAAFVMSPPLNPDTSTPDYLNSLLSCGDLQVTASANCTFTTAQKAVGKDDFTFIPEGTNGIEERMSIVWDKAVATGKMDENDFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWNTKETRTFSAKTHNLTVEVNIFEGMECRGFPVLVISQGRIVLEDGTLSVMEGSGRFIPRKAYPDYVYKRIKARSRMADARGVPRGNYDGPVHDVISMTKSVPATPTTRGPSCPGKTPLGPTRNLHQSGFTLSGTQMDDHIPRRTAQKIVAPPGGRSNITSLS", "length": 675 }, "evidence": [ { "id": "A0A480URP4", "url": "https://omabrowser.org/oma/group/A0A480URP4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0X2Q2-1", "protein_name": "Dihydropyrimidinase like 4", "gene_name": "DPYSL4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAERSAEPLPACFAGLGAGSPRPRQKRGGMFCSVEDAFDNKTLDFPSLGGGGGGRSRGSATPSDGSSSPAPPPPPRSPGAATAGGMSDGCRQSEQLLIKGGKIVNDDQSFYADIYVEDGLIKQIGENLAVPSGVRTVDAYGQLVVPGGIDVHTRLQMAVMGMASADDFYQGTRAALAGGTTMIMDHVLPEAGTSLLAAYEQWRQRADSRACCDYALHIDIPRWHESLREELEALVKDKGVNSFLVFMAYKDRLQCTDAQMYEIFCIIRDLGAIAQVHAENGDIIEEEQKRLLDIGITGPEGHVLSRPEEVEAEAVYRAITIAKQANCPLYVTKIMSKSAADVVAQAKRKGTVVYGEPITASLGADGSHYWSKNWAKAAAFVTSPPLSPDPTTPERLSSLLSCGDLQVAGSAHCTFTTAQKAVGKDNFTLIPEGTNGIEERMAIIWEKCVVSGKMDENDFVAVTSTNAAKIFNCYPRKGRIAVGSDADLVLWNPRATKVISAKTHNLNVEYNIFEGTECHGAPAVVISQGKVVLEDGNLFVTEGSGRFVPRKTFPDFVYKRIKARNRLAEVHGVPRGLYDGPVHDVVLSTKAVPTIAASRIAACAGKVPAVPVRNLHQSGFSLSGSQADDHVARRTAQKIMAPPGGRSNITSLS", "length": 653 }, "evidence": [ { "id": "A0A480URP4", "url": "https://omabrowser.org/oma/group/A0A480URP4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3IGF1-1", "protein_name": "Dihydropyrimidinase-related protein 4", "gene_name": "Dpysl4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSFQGKKSIPRITSDRLLIKGGKIVNDDQSFYADLYVEDGLIKQIGENLIVPGGIKTIDAHGLMVLPGGVDVHTRLQMPVLGMTPADDFCQGTKAALAGGTTMILDHVFPEPGVSLLAAYEQWRDRADSAACCDYSLHVDIPRWHESTKEELEALVRDKGVNSFLVFMAYKDRCQCTDGQMYEIFSLIRDLGALAQVHAENGDIVEEEQKRLLEQGITGPEGHVLSHPEEVEAEAVYRAVTIAKQANCPLYITKVMSKGAADMVAQAKRRGVVVFGEPITASLGTDGSHYWSKNWAKAAAFVTSPPINPDPTTADHLTSLLSSGDLQVTGSAHCTFTTAQKAVGKDNFTLIPEGVNGIEERMSVVWEKCVASGKMDENEFVAVTSTNAAKIFNFYPRKGRVAVGSDADLVIWNPRASKVISAKSHNLNVEYNIFEGVECRGVPTVVISQGRVVLEDGNLFVTPGAGRFIPRKTFPDFVYKRIKARNRLAEIHGVPRGLYDGPVHEVMLPAKPGTGTPARASCPGKISVPPVRNLHQSGFSLSGSQADDHIARRTAQKIMAPPGGRSNITSLS", "length": 572 }, "evidence": [ { "id": "A0A480URP4", "url": "https://omabrowser.org/oma/group/A0A480URP4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O14531-1", "protein_name": "Dihydropyrimidinase-related protein 4", "gene_name": "DPYSL4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSFQGKKSIPRITSDRLLIRGGRIVNDDQSFYADVHVEDGLIKQIGENLIVPGGIKTIDAHGLMVLPGGVDVHTRLQMPVLGMTPADDFCQGTKAALAGGTTMILDHVFPDTGVSLLAAYEQWRERADSAACCDYSLHVDITRWHESIKEELEALVKEKGVNSFLVFMAYKDRCQCSDSQMYEIFSIIRDLGALAQVHAENGDIVEEEQKRLLELGITGPEGHVLSHPEEVEAEAVYRAVTIAKQANCPLYVTKVMSKGAADAIAQAKRRGVVVFGEPITASLGTDGSHYWSKNWAKAAAFVTSPPVNPDPTTADHLTCLLSSGDLQVTGSAHCTFTTAQKAVGKDNFALIPEGTNGIEERMSMVWEKCVASGKMDENEFVAVTSTNAAKIFNFYPRKGRVAVGSDADLVIWNPKATKIISAKTHNLNVEYNIFEGVECRGAPAVVISQGRVALEDGKMFVTPGAGRFVPRKTFPDFVYKRIKARNRLAEIHGVPRGLYDGPVHEVMVPAKPGSGAPARASCPGKISVPPVRNLHQSGFSLSGSQADDHIARRTAQKIMAPPGGRSNITSLS", "length": 572 }, "evidence": [ { "id": "A0A480URP4", "url": "https://omabrowser.org/oma/group/A0A480URP4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O35098-1", "protein_name": "Dihydropyrimidinase-related protein 4", "gene_name": "Dpysl4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSFQGKKSIPRITSDRLLIKGGKIVNDDQSFHADLYVEDGLIKQIGENLIVPGGIKTIDAHGLMVLPGGVDVHTRLQMPVMGMTPADDFCQGTKAALAGGTTMILDHVFPDAGVSLLAAYEQWRERADSAACCDYSLHVDIPRWHESTKEELEALVRDKGVNSFLVFMAYKDRCQCTDGQIYEIFSLIRDLGAVAQVHAENGDIVEEEQKRLLEQGITGPEGHVLSHPEEVEAEAVYRAVTIAKQANCPLYVTKVMSKGAADMVAQAKRRGVVVFGEPITASLGTDGSHYWSKNWAKAAAFVTSPPINPDPTTADHLTSLLSSGDLQVTGSAHCTFTTAQKAVGKDNFTLIPEGVNGIEERMSVVWEKCVASGKMDENEFVAVTSTNAAKIFNFYPRKGRVAVGSDADLVIWNPRATKVFSAKSHNLNVEYNIFEGVECRGVPTVVISQGRVVLEDGNLLVTPGAGRFIPRKTFPDFVYKRIKARNRLAEIHGVPRGLYDGPVHEVMLPAKPGSGTQARASCSGKISVPPVRNLHQSGFSLSGSQADDHIARRTAQKIMAPPGGRSNITSLS", "length": 572 }, "evidence": [ { "id": "A0A480URP4", "url": "https://omabrowser.org/oma/group/A0A480URP4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q62951-1", "protein_name": "Dihydropyrimidinase-related protein 4", "gene_name": "Dpysl4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "IPRITSDRLLIKGGKIVNDDQSFHADLYVEDGLIKQIGENLIVPGGIKTIDAHGLMVLPGGVDVHTRLQMPVLGMTPADDFCQGTKAALAGGTTMILDHVFPDAGVSLLAAYEQWRERADSAACCDYSLHVDIPRWHESTKEELEALVRDKGVNSFLVFMAYKDRCQCTDGQIYEIFSLIRDLGAVAQVHAENGDIVEEEQKRLLEQGITGPEGHVLSHPEEVEAEAVYRAVTIAKQANCPLYITKVMSKGAADMVAQAKRRGVVVFGEPITASLGTDGSHYWSKNWAKAAAFVTSPPINPDPTTADHLTSLLSSGDLQVTGSAHCTFTTAQKAVGKDNFTLIPEGINGIEERMSVVWEKCVASGKMDENEFVAVTSTNAAKIFNFYPRKGRVAVGSDADLVIWNPRATKVISAKSHNLNVEYNIFEGVECRGMPTVVISQGRVVLEDGNLLVTPGAGRFIPRKTFPDFVYKRIKARNRLAEIHGVPRGLYDGPVHEVMLPAKPGSGTQARASCPGKISVPPVRNLHQSGFSLSGSQADDHIARRTAQKIMAPPGGRSNITSLS", "length": 564 }, "evidence": [ { "id": "A0A480URP4", "url": "https://omabrowser.org/oma/group/A0A480URP4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A480URP4", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A480URP4", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides", "id": "GO:0016812", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016812", "evidence": [ { "database": "UniProtKB", "id": "A0A480URP4", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4" } ], "pmid": "" }, { "name": "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds", "id": "GO:0016810", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016810", "evidence": [ { "database": "UniProtKB", "id": "A0A480URP4", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 347, "end_pos": 349, "annotation": "n_glycosylation_sequon" }, { "start_pos": 567, "end_pos": 569, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480URP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4" }, { "id": "PF01979", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01979" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Amidohydrolase-related", "eco_id": "ECO_0000259", "start_pos": 64, "end_pos": 453, "start_aa": "Met", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [ { "evidence": [ { "id": "A0A5G2QSW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSW3#function" }, { "id": "A0A5G2QSW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSW3" }, { "id": "PIRSR611778-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR611778-2" } ], "binding_site_uniprot": 108, "amino_acid": "Val", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 108, "end_pos": 108, "start_aa": "Val", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A480URP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4#function" }, { "id": "A0A480URP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480URP4" }, { "id": "PIRSR611778-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR611778-2" }, { "id": "A0A8W4FN55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN55#function" }, { "id": "A0A8W4FN55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN55" }, { "id": "F1SDI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDI9#function" }, { "id": "F1SDI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDI9" } ], "binding_site_uniprot": 198, "amino_acid": "His", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 198, "end_pos": 198, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QSW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSW3#function" }, { "id": "A0A5G2QSW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSW3" }, { "id": "PIRSR611778-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR611778-2" } ], "binding_site_uniprot": 233, "amino_acid": "Ala", "chebi_lig_id": 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"binding_site_uniprot": 73, "amino_acid": "His", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 73, "end_pos": 73, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 462 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 347, "end_pos": 349 }, { "start_pos": 567, "end_pos": 569 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480V3U0-1", "uniprot_ac": "A0A480V3U0", "uniprot_id": "A0A480V3U0_PIG", "mass": { "chemical_mass": 35928.0, "monoisotopic_mass": 35928.0 }, "refseq": { "ac": "NP_001191173", "name": "bifunctional peptidase and (3S)-lysyl hydroxylase JMJD7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191173" }, "gene_names": [ { "name": "JMJD7", "type": "recommended", "evidence": [ { "id": "A0A480V3U0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480V3U0" } ] }, { "name": "JMJD7", "type": "synonym", "evidence": [ { "id": "NP_001191173", "database": "RefSeq", "url": 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"url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100533119", "resource": "KEGG Pathway" }, { "id": "R-SSC-9629569", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9629569", "resource": "Reactome", "description": "Protein hydroxylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "endopeptidase activity", "id": "GO:0004175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004175", "evidence": [ { "database": "UniProtKB", "id": "A0A480V3U0", "url": "https://www.uniprot.org/uniprotkb/A0A480V3U0" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A480V3U0", "url": "https://www.uniprot.org/uniprotkb/A0A480V3U0" } ], "pmid": "" }, { "name": "aminopeptidase activity", "id": "GO:0004177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004177", "evidence": [ { 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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9629578", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9629578" } ] }, { "id": "R-SSC-9629591", "name": "JMJD7 dimer hydroxlates a lysine residue of DRG1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. 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"categories": [ "Protein Classification" ] }, { "id": "A0A480V8F1", "url": "https://www.orthodb.org/?gene=A0A480V8F1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21207", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21207", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21207:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21207:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10274", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10274", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003128927", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128927", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480V8F1", "url": "https://www.uniprot.org/uniprotkb/A0A480V8F1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480V8F1-1", "url": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1HQR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1HQR2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQKSECHGGVQLRNRVTDDHDERTSLSAQVKHRTTVQQSKSLSTSSPESARQLYPRPSDKLNPKTINPFGEQSRVPSAFAAVYSKGGIPCRLVHGSVKHRLQWDCPPENLPFDPLLITLAEGLRETKHPYTFVSKEGFRELLLVAGAPEKAVPLLPRLIPVLKAALVHLDDDVFERGLNALVQLSGVVGPSLNDHLKHLLTSLSKRLRDKKFKEPITSALQKLEQHGGSGSLLIIKSKIPTYCSIRC", "length": 247, "header": "tr|A0A480V8F1-1|A0A480V8F1_PIG Isoform 1 of Parkin coregulated like OS=Sus scrofa OX=9823 GN=PACRGL PE=4 SV=1 CANONICAL=A0A480V8F1-1" }, "isoforms": [ { "isoform_ac": "A0A480V8F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480V8F1/entry#A0A480V8F1-1", "sequence": { "sequence": "MQKSECHGGVQLRNRVTDDHDERTSLSAQVKHRTTVQQSKSLSTSSPESARQLYPRPSDKLNPKTINPFGEQSRVPSAFAAVYSKGGIPCRLVHGSVKHRLQWDCPPENLPFDPLLITLAEGLRETKHPYTFVSKEGFRELLLVAGAPEKAVPLLPRLIPVLKAALVHLDDDVFERGLNALVQLSGVVGPSLNDHLKHLLTSLSKRLRDKKFKEPITSALQKLEQHGGSGSLLIIKSKIPTYCSIRC", "length": 247, "header": "tr|A0A480V8F1-1|A0A480V8F1_PIG Isoform 1 of Parkin coregulated like OS=Sus scrofa OX=9823 GN=PACRGL PE=4 SV=1 CANONICAL=A0A480V8F1-1" }, "locus": { "chromosome": "8", "start_pos": 15210509, "end_pos": 15195876, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054129.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054129.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041377.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041377.1" } ] } }, { "isoform_ac": "A0A5G2QBA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480V8F1/entry#A0A5G2QBA3-1", "sequence": { "sequence": "MQKSECHGGVQLRNRVTDDHDERTSLSAQVKHRTTVQQSKSLSTSSPESARQLYPRPSDKLNPKTINPGSLLIIKSKIPTYCSIRC", "length": 86, "header": "tr|A0A5G2QBA3-1|A0A480V8F1_PIG Computationally mapped isoform of Parkin coregulated like OS=Sus scrofa OX=9823 GN=PACRGL PE=4 SV=1 CANONICAL=A0A480V8F1-1" }, "locus": { "chromosome": "8", "start_pos": 15210509, "end_pos": 15195876, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082151.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082151.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060736.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060736.1" } ] } }, { "isoform_ac": "A0A5G2R5D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480V8F1/entry#A0A5G2R5D3-1", "sequence": { "sequence": "MQKSECHGGVQLRNRVTDDHDERTSLSAQVKHRTTVQQSKSLSTSSPESARQLYPRPSDKLNPKTINPVHLDDDVFERGLNALVQLSGVVGPSLNDHLKHLLTSGSLLIIKSKIPTYCSIRC", "length": 122, "header": "tr|A0A5G2R5D3-1|A0A480V8F1_PIG Computationally mapped isoform of Parkin coregulated like OS=Sus scrofa OX=9823 GN=PACRGL PE=4 SV=1 CANONICAL=A0A480V8F1-1" }, "locus": { "chromosome": "8", "start_pos": 15210509, "end_pos": 15195876, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090122.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090122.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069380.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069380.1" } ] } }, { "isoform_ac": "A0A8D0XF63-1", "url": "https://www.uniprot.org/uniprotkb/A0A480V8F1/entry#A0A8D0XF63-1", "sequence": { "sequence": "MQKSECHGGVQLRNRVTDDHDERTSLSAQVKHRTTVQQSKSLSTSSPESARQLYPRPSDKLNPKTINPGLRETKHPYTFVSKEGFRELLLVAGAPEKAVPLLPRLIPVLKAALVHLDDDVFERGLNALVQLSGVVGPSLNDHLKHLLTSGSLLIIKSKIPTYCSIRC", "length": 167, "header": "tr|A0A8D0XF63-1|A0A480V8F1_PIG Computationally mapped isoform of Parkin coregulated like OS=Sus scrofa OX=9823 GN=PACRGL PE=4 SV=1 CANONICAL=A0A480V8F1-1" }, "locus": { "chromosome": "8", "start_pos": 15210509, "end_pos": 15195876, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071357.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071357.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068887.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068887.1" } ] } }, { "isoform_ac": "A0A8D1HQR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480V8F1/entry#A0A8D1HQR2-1", "sequence": { "sequence": "MQKSECHGGVQLRNRVTDDHDERTSLSAQVKHRTTVQQSKSLSTSSPESARQLYPRPSDKLNPKTINPFGEQSRVPSAFAAVYSKGGIPCRLVHGSVKHRLQWDCPPENLPFDPLLITLAEGLRETKHPYTFVSKEGFRELLLVAGAPEKAVPLLPRLIPVLKAALVHLDDDVFERGLNALVQLSGVVGPSLNDHLKHLLTSGSLLIIKSKIPTYCSIRC", "length": 220, "header": "tr|A0A8D1HQR2-1|A0A480V8F1_PIG Computationally mapped isoform of Parkin coregulated like OS=Sus scrofa OX=9823 GN=PACRGL PE=4 SV=1 CANONICAL=A0A480V8F1-1" }, "locus": { "chromosome": "8", "start_pos": 15210509, "end_pos": 15195876, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009573.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009573.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009326.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009326.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBA3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBA3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515674", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515674", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MLN4-1", "protein_name": "Parkin coregulated like", "gene_name": "PACRGL", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQKSEFHRGVQMRSRLTDNCDQRTSSSAQVKHGTTVQQSKSSSSTSSPESARKLHPRPSDKLNPKTINPFGEQSRAPSAFAAIYSKGGIPCRLVHGSVKHRLQWECPPEKLPFDPLLITLAEGLRETKHPYTFVSKEGFRELLLVTGAPEKAVPLLPRLIPVLKAALGQMIPYWKIPLEDVLKVHVDDEVFERGLNALVQLSVVVGPALNDHLKHLLTSLSKRLRDKKFKEPITTALQKLEQHGGSGSLIIIKSKIPTYCSICC", "length": 264 }, "evidence": [ { "id": "A0A480V8F1", "url": "https://omabrowser.org/oma/group/A0A480V8F1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZE96-1", "protein_name": "Parkin coregulated like", "gene_name": "Pacrgl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "KRSYAEIRVLWRCAIEKQSNSNDRTSSSTQVKHRTAVQRSKSSSLTSSPEAARRAHPRPSDKLNPKTINPFGEQPRAPSAFAAIYSQGGIPCRLVHGSVKHRLQWECQPETLPFDPLLITLAEGLRETKHPYTFVSKEGFRELLLVKDAPEKAIPLLPRLIPVLKAALVHSADEVFERGLSALVQLSAVVGPSLNGHLKLLLTSLSKRLMDKKFKEPITSALQKLEQHGGSASLIIIKSKIPTYCSICS", "length": 249 }, "evidence": [ { "id": "A0A480V8F1", "url": "https://omabrowser.org/oma/group/A0A480V8F1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8N7B6-1", "protein_name": "PACRG-like protein", "gene_name": "PACRGL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLNPKTINPFGEQSRVPSAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITLAEGLRETKHPYTFVSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALVQLSVVVGPSLNDHLKHLLTSLSKRLMDKKFKEPITSALQKLEQHGGSGSLSIIKSKIPTYCSICC", "length": 248 }, "evidence": [ { "id": "A0A480V8F1", "url": "https://omabrowser.org/oma/group/A0A480V8F1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D3X5-1", "protein_name": "PACRG-like protein", "gene_name": "Pacrgl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQRSECSGGVQLRNRATGSNDQRTSSSTQMKHRTTVQRSKSSSLTSSPEAARRARPRPSDKLNPKTINPFGEQPRAPTAFAAIYSQGGIPCRLVHGSVKHRLQWECPPEILPFDPLLITLAEGLRETKHPYTFVSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLSALVQLSVVVGPSLNGHLKLLLTSLSKRLMDKKFKEPITSALQKLEQHGGNASLIIIKSKIPTYCSICC", "length": 248 }, "evidence": [ { "id": "A0A480V8F1", "url": "https://omabrowser.org/oma/group/A0A480V8F1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], 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"https://www.uniprot.org/uniprotkb/A0A480VS16", "locus": { "chromosome": "14", "start_pos": 134002228, "end_pos": 134082462, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010732", "url": "https://www.ensembl.org/id/ENSSSCG00000010732" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010732", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010732", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153610", "url": "https://www.ncbi.nlm.nih.gov/gene/100153610", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153610", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153610", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WSPDPNP", "url": "https://omabrowser.org/oma/group/WSPDPNP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480VS16", "url": "https://www.orthodb.org/?gene=A0A480VS16", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28567", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28567", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28567:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28567:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15242", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15242", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005671606", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671606", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480VS16", "url": "https://www.uniprot.org/uniprotkb/A0A480VS16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480VS16-1", "url": "https://www.uniprot.org/uniprotkb/A0A480VS16-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVMILSQSLDKQGADPIACRTFSPELHTPKKMSQGPTLFSCGIMENDRWRDLDRKCPLQIDQPSAGIWECLPEKCQDSALWHREAATACAVTNLIKDLSLSDHNGNPSAPPSKRQCRSLSFSDEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQRYANGLSPMQRSSSFSLPSRASVLSSPCDQAGLHHRLGIQPCQGAPGSAAGGQVGDLWGPAPSPVAGGRLDMQRSLSCSHEQFSFAEYGPPSANSTPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRRPEEVQEQRPSLDLAKMAQNCQTFSSLSSLSAGMEDCGPHSPFTLHVSSTRSWTALLSASASGLGGRTPAGTPVPEPLPPSLDDQLTCREELCCEESGGCTLDEGCPRRGEPATAWRDRRATRNSPCSLDGELDIEQIENN", "length": 426, "header": "tr|A0A480VS16-1|A0A480VS16_PIG Isoform 1 of Family with sequence similarity 53 member B OS=Sus scrofa OX=9823 GN=FAM53B PE=3 SV=1 CANONICAL=A0A480VS16-1" }, "isoforms": [ { "isoform_ac": "A0A480VS16-1", "url": "https://www.uniprot.org/uniprotkb/A0A480VS16/entry#A0A480VS16-1", "sequence": { "sequence": "MVMILSQSLDKQGADPIACRTFSPELHTPKKMSQGPTLFSCGIMENDRWRDLDRKCPLQIDQPSAGIWECLPEKCQDSALWHREAATACAVTNLIKDLSLSDHNGNPSAPPSKRQCRSLSFSDEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQRYANGLSPMQRSSSFSLPSRASVLSSPCDQAGLHHRLGIQPCQGAPGSAAGGQVGDLWGPAPSPVAGGRLDMQRSLSCSHEQFSFAEYGPPSANSTPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRRPEEVQEQRPSLDLAKMAQNCQTFSSLSSLSAGMEDCGPHSPFTLHVSSTRSWTALLSASASGLGGRTPAGTPVPEPLPPSLDDQLTCREELCCEESGGCTLDEGCPRRGEPATAWRDRRATRNSPCSLDGELDIEQIENN", "length": 426, "header": "tr|A0A480VS16-1|A0A480VS16_PIG Isoform 1 of Family with sequence similarity 53 member B OS=Sus scrofa OX=9823 GN=FAM53B PE=3 SV=1 CANONICAL=A0A480VS16-1" }, "locus": { "chromosome": "14", "start_pos": 134082279, "end_pos": 134006094, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057914.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057914.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047221.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047221.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 251, "start_aa": "Thr", "end_pos": 251, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr251", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480VS16", "url": "https://www.uniprot.org/uniprotkb/A0A480VS16" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153610", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153610", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LR72-1", "protein_name": "Family with sequence similarity 53 member B", "gene_name": "FAM53B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVMILSQSLDKQGADPVACRTFNPEPHTPKKMSQGPTLFSCGIMENDRWRDLDRKCPLQIDQPSASIWECLPDKCQDSALWHREAATTCAVTNLIKDLSLSDHNGHPSAPPSKRQCRSLSFSDEMASCRTSWRPLGSKVWTPVEKRRCYSGGSVQRYSNGFGTMQRSSSFSLPSRASTLSSPYDPAGLHPRPGGPPGPGVLGPATCGQAGDLWGPAASPVGGGRLDMQRSLSCSHEQFSFAEYCPPSASSTPASTPEPARRSGGLARSRSQPCVLNDKKVGIKRRRPEEAQEQRPSLDLAKMAQNCQTFSSLSCLNTGTEDRSTHSPFALHTRSWATLHSAPSAGGRTPAGTPVPEPLPSSLDDSLACREEPCCEELGTAWRDRRARSSPCSLDGELDIEQIENN", "length": 405 }, "evidence": [ { "id": "A0A480VS16", "url": "https://omabrowser.org/oma/group/A0A480VS16/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V0XAR9-1", "protein_name": "Family with sequence similarity 53 member B", "gene_name": "FAM53B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVMILTKTRENKGADSVTCRTELHTPKMSQGPTLFSCGIMENDRWGDLSRKCPLQIEQPGTNIWDCLADKGEEGTLWPREATSTCSVTNLIKELSLSDPHSNPSAPPSKRQCRSLSFSDEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQRYSNGSATMQRSSSFSLPSRSHPLASSCDHRPGCPPRRSGAGGDAWSPEGGRADMQRSLSCSHDRFSSSEPGPPSASSTPASTPQLGRRAGGLCRSRSQPCVLNDKKVGVKRRRPQDAQEPRPSLDLAKMTQNRQTFNSLSSLSTAAEDNTQRLPTTRPWTTAPHSPEVMPGRTPACTPVPEPRTRGEERGVSRDDLSCEESDEGGGKEDDGTPWRGGGAGTQSPFQLDGEIDIEQIENN", "length": 391 }, "evidence": [ { "id": "A0A480VS16", "url": "https://omabrowser.org/oma/group/A0A480VS16/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3Z8Z2-1", "protein_name": "Family with sequence similarity 53, member B", "gene_name": "Fam53b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"MVMILRRSLIIQGADSIAYRTFVPELHTPKKMSQGPTLLSCGIMENDRWRDLDRKCPLQIDQPSASIWECLPEKCQDSSLWHQEAVTACAVTSLIKDLSISDHNGNPSAPPSKRQCRSLSFSDEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQRYSNGVSPMQRSSSFSLPARANGLSSPCHQSSLHQRFGGQPCQGAPGSAPCGQVGDAWSPDPHPVGGGRLDLQRSLSCSHEQFSFPEYCSPSANSTPASTPELARRSSGLARSRSQPCVLNDKKIGVKRRRPEEVREQRPSLDLAKMAQNCQTFSSLSCLSMGVEDHSSQNPFALVSSTRSWTALLSASNPGGRTPAGTPVPEPVPHSFDDHFTCQEDLPCEESDGCSLDEDCCRKGEPATAWQDLGACTNSLCSLDGELDIEQIENN", "length": 423 }, "evidence": [ { "id": "A0A480VS16", "url": "https://omabrowser.org/oma/group/A0A480VS16/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q14153-1", "protein_name": "Protein FAM53B", "gene_name": "FAM53B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVMVLSESLSTRGADSIACGTFSRELHTPKKMSQGPTLFSCGIMENDRWRDLDRKCPLQIDQPSTSIWECLPEKDSSLWHREAVTACAVTSLIKDLSISDHNGNPSAPPSKRQCRSLSFSDEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQRYSNGFSTMQRSSSFSLPSRANVLSSPCDQAGLHHRFGGQPCQGVPGSAPCGQAGDTWSPDLHPVGGGRLDLQRSLSCSHEQFSFVEYCPPSANSTPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRRPEEVQEQRPSLDLAKMAQNCQTFSSLSCLSAGTEDCGPQSPFARHVSNTRAWTALLSASGPGGRTPAGTPVPEPLPPSFDDHLACQEDLSCEESDSCALDEDCGRRAEPAAAWRDRGAPGNSLCSLDGELDIEQIEKN", "length": 422 }, "evidence": [ { "id": "A0A480VS16", "url": "https://omabrowser.org/oma/group/A0A480VS16/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BGR5-1", "protein_name": "Protein FAM53B", "gene_name": "Fam53b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"name": "positive regulation of canonical Wnt signaling pathway", "id": "GO:0090263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090263", "evidence": [ { "database": "UniProtKB", "id": "A0A480VS16", "url": "https://www.uniprot.org/uniprotkb/A0A480VS16" } ], "pmid": "" }, { "name": "protein import into nucleus", "id": "GO:0006606", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006606", "evidence": [ { "database": "UniProtKB", "id": "A0A480VS16", "url": "https://www.uniprot.org/uniprotkb/A0A480VS16" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], 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"https://www.ncbi.nlm.nih.gov/protein/XP_020944894" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480WBM1", "url": "https://www.uniprot.org/uniprotkb/A0A480WBM1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SBSPON", "url": "https://www.uniprot.org/uniprotkb/A0A480WBM1", "locus": { "chromosome": "4", "start_pos": 62791609, "end_pos": 62756342, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006183", "url": "https://www.ensembl.org/id/ENSSSCG00000006183" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006183", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006183", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517890", "url": "https://www.ncbi.nlm.nih.gov/gene/100517890", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001212", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001212", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044004", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044004", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056801", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056801", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517890", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517890", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QAASPQW", "url": "https://omabrowser.org/oma/group/QAASPQW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480WBM1", "url": "https://www.orthodb.org/?gene=A0A480WBM1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20920", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20920", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20920:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20920:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF19028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25031", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25031", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5173214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5173214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020944894", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944894", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480WBM1", "url": "https://www.uniprot.org/uniprotkb/A0A480WBM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480WBM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480WBM1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWI4", "url": "https://www.uniprot.org/uniprotkb/F1RWI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWI4-1", "url": "https://www.uniprot.org/uniprotkb/F1RWI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRTLWMALCALARLWPGALGGCADAGRCCPGRDPACFASGWRLDRVYGTCFCDQACRLTGDCCFDYARACPARPCIVGEWSPWSGCADQCKPTARVRRRAVRQEPQNGGAPCPALEERAGCLEYATAQGQDCGHAFVPAFITTSAFNKERTRRAASPQWSADTEDAGYCMEFKTESLTHHCALENRPLTRWMQYLREGYTVCVGCQPPAMNAVSLRCSGDGLDSDGNQTLHWQAIGNPRCQGTWKKVRRVEQCSCPAVHSFIFI", "length": 264, "header": "tr|A0A480WBM1-1|A0A480WBM1_PIG Isoform 1 of Somatomedin B and thrombospondin type 1 domain containing OS=Sus scrofa OX=9823 GN=SBSPON PE=1 SV=1 CANONICAL=A0A480WBM1-1" }, "isoforms": [ { "isoform_ac": "A0A480WBM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A480WBM1/entry#A0A480WBM1-1", "sequence": { "sequence": "MRTLWMALCALARLWPGALGGCADAGRCCPGRDPACFASGWRLDRVYGTCFCDQACRLTGDCCFDYARACPARPCIVGEWSPWSGCADQCKPTARVRRRAVRQEPQNGGAPCPALEERAGCLEYATAQGQDCGHAFVPAFITTSAFNKERTRRAASPQWSADTEDAGYCMEFKTESLTHHCALENRPLTRWMQYLREGYTVCVGCQPPAMNAVSLRCSGDGLDSDGNQTLHWQAIGNPRCQGTWKKVRRVEQCSCPAVHSFIFI", "length": 264, "header": "tr|A0A480WBM1-1|A0A480WBM1_PIG Isoform 1 of Somatomedin B and thrombospondin type 1 domain containing OS=Sus scrofa OX=9823 GN=SBSPON PE=1 SV=1 CANONICAL=A0A480WBM1-1" }, "locus": { "chromosome": "4", "start_pos": 62789214, "end_pos": 62756369, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090349.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090349.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068200.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068200.1" } ] } }, { "isoform_ac": "F1RWI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A480WBM1/entry#F1RWI4-1", "sequence": { "sequence": "MRTLWMALCALARLWPGALGGCADAGRCCPGRDPAYCCFDYARACPARPCIVGEWSPWSGCADQCKPTARVRRRAVRQEPQNGGAPCPALEERAGCLEYATAQGQDCGHAFVPAFITTSAFNKERTRRAASPQWSADTEDAGYCMEFKTESLTHHCALENRPLTRWMQYLREGYTVCVGCQPPAMNAVSLRCSGDGLDSDGNQTLHWQAIGNPRCQGTWKKVRRVEQCSCPAVHSFIFI", "length": 239, "header": "tr|F1RWI4-1|A0A480WBM1_PIG Computationally mapped isoform of Somatomedin B and thrombospondin type 1 domain containing OS=Sus scrofa OX=9823 GN=SBSPON PE=1 SV=4 CANONICAL=A0A480WBM1-1" }, "locus": { "chromosome": "4", "start_pos": 62789214, "end_pos": 62756369, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006777.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006777.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006594.5", "url": "https://www.ensembl.org/id/ENSSSCP00000006594.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RWI4", "url": "https://www.uniprot.org/uniprotkb/F1RWI4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517890", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517890", "resource": "KEGG Pathway" }, { "id": "R-SSC-5173214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5173214", "resource": "Reactome", "description": "O-glycosylation of TSR domain-containing proteins" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M1QUS9-1", "protein_name": "Somatomedin-B and thrombospondin type-1 domain-containing protein", "gene_name": "sbspon", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGLLSVKQNALLLVATFFGMCHFSDGGCSGRCCQGSDFTCFTTDWRMDHVYGTCYCDEKCLKTKDCCFDYPAECPAQPCVVSEWSNWSGCAQPCQPSFRVRRRNVERLPQNNGEACLSLEEQAGCMEYQDHQGQFCSQTQGAAFITTMEYSKGRTHELYGAPVDAGFCMEFKMESLTAQCMGENRPYARWMQYLREGYTVCVACQPPANHSWGCQGDGNLAERNDLLHWQAVGNPPCRGTWRKVQRLQHCSCPQVHSFIFI", "length": 261 }, "evidence": [ { "id": "A0A480WBM1", "url": "https://omabrowser.org/oma/group/A0A480WBM1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0X7F1-1", "protein_name": "Somatomedin B and thrombospondin type 1 domain containing", "gene_name": "SBSPON", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTTTILCGVMAAEDISVLYISAKLNAALDPPATRTPVPHLPNPSALHGARGRRGREGRAGKGRAQPSRSPPPGPAARPPAQPAPRYRVSVTVVGDMGAVALSGALCLGLLWRLWAGAGGSCSERCCQGRDAACVSSGWREDGGYGTCYCDGGCRRTRDCCHDHGHACPAHPCIVGEWSHWSGCAEQCKPSLRIRRRYVQQEPTNAGEPCPALEEKAGCLEYLTYQGQDCGHEHVPAFITTSEYDKERKLRAASSPWPSDKETGYCVEFKTESLSHYCALENRPYARWMQYLREGHTVCVACQPPAMNTDTHRCSGDGHNADGGKILHWEAVGNSRCQGTWKKIRQLKQCSCPLVHSFIFT", "length": 360 }, "evidence": [ { "id": "A0A480WBM1", "url": "https://omabrowser.org/oma/group/A0A480WBM1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZS55-1", "protein_name": "Somatomedin B and thrombospondin, type 1 domain containing", "gene_name": "Sbspon", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRTLWMVLCALARLWPGALAGCAEAGRCCPGRDPACFARGWRLDRVYGTCFCDQACRLTGDCCFDYDRACPARPCFVGEWSPWSGCAGQCQPTMRVRRRSVHQEPLNGGAPCPPLEERAGCLEYSSSQGQDCGHSFVPAFITSSAFNKKRIVQAVSPQWPTHTEDAGYCMEFKTESLTAHCALDSRPLTRWMQYLREGYTVCVDCQPPAMNSVSLRCSGDGLDSDGNQTLRWQAIGNPRCQGTWKKVRRAEQCSCPDVHRFIFI", "length": 264 }, "evidence": [ { "id": "A0A480WBM1", "url": "https://omabrowser.org/oma/group/A0A480WBM1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q32L50-1", "protein_name": "Somatomedin-B and thrombospondin type-1 domain-containing protein", "gene_name": "SBSPON", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRTLWMALCVLARLWPGALAGCADAGRCCPGRDPACFASGWRQDRVYGTCFCDQACRLTGDCCFDYARACPARPCIVGEWSPWSGCASQCRPTARVRRRAVQQEPQNGGEPCPALEERAGCLEYATPQGEDCGHAFVPAFITTSAFNKERTRQAASPHWTTSTEDAGYCMEFKTESLTHHCALENRPLTRWMQYLREGYTVCVDCQPPAMNSVSLRCSGDGLDSDGNQTLHWQAIGNPRCQGTWKKVRRVEQCSCPAVHSFIFI", "length": 264 }, "evidence": [ { "id": "A0A480WBM1", "url": "https://omabrowser.org/oma/group/A0A480WBM1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3UPR9-1", "protein_name": "Somatomedin-B and thrombospondin type-1 domain-containing protein", "gene_name": "Sbspon", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLWMVLCALARLWPGALAGCAEAGRCCPGRDPACFARGWRLDRVYGTCFCDQACRLTGDCCFDYDRACPARPCFVGEWSPWSGCAGQCQPTTRVRRRSVRQEPLNGGAPCPPLEERAGCLEYSSSQSQDCGHSFVPAFITSSVFNKKRIIQAVSPQWSTHTKDAGYCMEFKTESLTPHCALVNSPLTRWMQYLREGYTVCVDCQPPAMNSVSLRCSGDGLDSDGNQTLRWQAIGNPRCQGTWKKVRRVEQCSCPDVHRFIFI", "length": 264 }, "evidence": [ { "id": "A0A480WBM1", "url": "https://omabrowser.org/oma/group/A0A480WBM1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IVN8-1", "protein_name": "Somatomedin-B and thrombospondin type-1 domain-containing protein", "gene_name": "SBSPON", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRTLWMALCALSRLWPGAQAGCAEAGRCCPGRDPACFARGWRLDRVYGTCFCDQACRFTGDCCFDYDRACPARPCFVGEWSPWSGCADQCKPTTRVRRRSVQQEPQNGGAPCPPLEERAGCLEYSTPQGQDCGHTYVPAFITTSAFNKERTRQATSPHWSTHTEDAGYCMEFKTESLTPHCALENWPLTRWMQYLREGYTVCVDCQPPAMNSVSLRCSGDGLDSDGNQTLHWQAIGNPRCQGTWKKVRRVDQCSCPAVHSFIFI", "length": 264 }, "evidence": [ { "id": "A0A480WBM1", "url": "https://omabrowser.org/oma/group/A0A480WBM1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 227, "end_pos": 229, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480WBM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480WBM1" }, { "id": "PS50958", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50958" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SMB", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 75, "start_aa": "Asp", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 227, "end_pos": 229 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480WFY6-1", "uniprot_ac": "A0A480WFY6", "uniprot_id": "A0A480WFY6_PIG", "mass": { "chemical_mass": 25876.0, "monoisotopic_mass": 25876.0 }, "refseq": { "ac": "XP_020941989", "name": "dnaJ homolog subfamily C member 30", "summary": "", "url": 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Associates with the ATP synthase complex and facilitates ATP synthesis. May be a chaperone protein involved in the turnover of the subunits of mitochondrial complex I N-module. 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332, "header": "tr|A0A5G2R1K6-1|A0A480WVU0_PIG Computationally mapped isoform of Fatty acid desaturase 6 OS=Sus scrofa OX=9823 GN=FADS6 PE=4 SV=1 CANONICAL=A0A480WVU0-1" }, "locus": { "chromosome": "12", "start_pos": 6366394, "end_pos": 6354050, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066644.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066644.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070235.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070235.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., 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"MCLWDPVLVMCCLRSMAAGSSLLHSRGLCSSLLSCCVLEDLTGVIAEDEELWPQLDDGDVTSGRGEDARRALQRAGSGEALMAELSERVQKVVRSSSWWERHGVDICILSCSLLALPVGFLCLRSAHAIPFLVGVLTLGVGYHTLAVKGSHLASHNALTKSKSWGKVWAVFFIEFCSAFTAEQASYNHVKLHHGYTNVIGLGDSSTWKLPFLNRYIYMFIAPLAVPIITPLVALDLLRNVEMRAALRTVCLMSLGLCCHYCLLRHVSGFQSPWSALLCMLLTRSLLAHPYIHVNIFQHIGLPMFAADRKPKRIQQMSLGVLNLPRNALLDWCFGHSLISCHVEHHLFPSLSDNMCLKIKPVVSQYLKEKRLPYNEDTYGSRLQLFLQKYEELMVHAPPITELVGIQ", "length": 406 }, "evidence": [ { "id": "A0A480WVU0", "url": "https://omabrowser.org/oma/group/A0A480WVU0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A2VE15-1", "protein_name": "Fatty acid desaturase 6", "gene_name": "FADS6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPAGGAPRESARAEALLGELEARVQEVVRASSWWERHGVDCAILALSLLALPPGFLCLRSDSPLVFALGITILGVCHYTLTVKGSHLATHGALTESRGWSKVWTLFFVEVCTSFTAEYAKYGHVKMHHGYTNVLGLGDSSTWRLPCLNRYVYMFLAPLLIPIITPLVAVERLREVELRTALRTLGLISLGLYSQYWLLLNVSGFQSPSSALACMLITRSLLAHPYLHVNIFQHIGLPMFSPDKKPRRIHMMSLGVLNLPRLPVLDWAFGHSLISCHVEHHLFPRLSDNMCLKVKPVVSQFLHEKQLPYNEDSYLARFWLFLQRYEEFMVQTPPITELVGLQ", "length": 342 }, "evidence": [ { "id": "A0A480WVU0", "url": "https://omabrowser.org/oma/group/A0A480WVU0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZEE9-1", "protein_name": "Fatty acid desaturase 6", "gene_name": "Fads6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPTRSAPPGDGAAEALLKELERQVQDVVRASSWWERHGVDCAILALSLLALPAGFLCLRFHNVLAFATGITILGVCHYTLTVKGSHLATHSALTESKRWSKILMIFFVEVCTAFPAEFAKFNHVNMHHGYTNVLGLGDSSTWKMPLLNRYVYMLLGPLLVPLLTPLVALEHLRKEELKTALRALGFICLGLYSQYWLFMNVSGFKSPASALACMLLARSLLAHPYLHVNIFQHIGLPMFSPDKKPRRIHMMTLGVLNLPRQPVLDWAFGHSLISCHVEHHLFPWLSDHMCLKVKPVVSKFLHDKRLPYNEDSYLARFQLFLSRYEEFMVHVPPITELVGLQ", "length": 342 }, "evidence": [ { "id": "A0A480WVU0", "url": "https://omabrowser.org/oma/group/A0A480WVU0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3GTG6-1", "protein_name": "Fatty acid desaturase 6", "gene_name": "Fads6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEPAHRASPGDGAAEALLSELERQVQDVVRASSWWERRGVDCAILALSLLALPAGFLCLRFHNVLAFATGITILGVCHYTLTVKGSHLATHGALTESKRWSKILMIFFVEVCTAFPAEFGKFNHVNMHHGYTNVVGLGDSSTWKVPSLNRYIYMFLAPLSIPILTPLVALERLRKEELRVALRTLGFISLGLYSQYWLFLNVSGFKSSSSALACMLLARSLLAHPYLHVNIFQHIGLPMFSPDKKPRRIHMMTLGVLNLPRQPVLDWAFGHSLISCHVEHHLFPWLSDRMCLKVKPLVSKFLHDKQLPYNEDSYLARFQLFLSHYEEFMVHAPSITELVGMQ", "length": 342 }, "evidence": [ { "id": "A0A480WVU0", "url": "https://omabrowser.org/oma/group/A0A480WVU0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q80UG1-1", "protein_name": "Fatty acid desaturase 6", "gene_name": "Fads6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVRSAPPGDGAAEALLKELERQVQDVVRASSWWERHGVDCAILALSLLALPAGFLCLRAHNILAFATGITILGVCHYTLTVKGSHLATHSALTESKRWSKILMIFFLEVCTAFSAEFAKFNHVNLHHVYTNVVGLGDSSTWKVPLLNRYVYMFLGPLLVPIITPLVALEHLRKEEPRTALRTLGFICLGLYSQYWLFMNVSGFKNPSSALACMLLTRSLLAHPYLHVNIFQHIGLPMFSPDKKPRRIHMMTLGVLNLPRQLVLDWAFGHSLISCHVEHHLFPWLSDHMCLKVKPLVSKFLHEKQLPYNEDSYLARFQLFLSRYEEFMVHVPPITELVGVQ", "length": 342 }, "evidence": [ { "id": "A0A480WVU0", "url": "https://omabrowser.org/oma/group/A0A480WVU0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "A0A480WVU0", "url": "https://www.uniprot.org/uniprotkb/A0A480WVU0" } ], "pmid": "" }, { "name": "fatty acid biosynthetic process", "id": "GO:0006633", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006633", "evidence": [ { "database": "UniProtKB", "id": "A0A480WVU0", "url": "https://www.uniprot.org/uniprotkb/A0A480WVU0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A480WVU0", "url": "https://www.uniprot.org/uniprotkb/A0A480WVU0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water", "id": "GO:0016717", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016717", "evidence": [ { "database": "UniProtKB", "id": "A0A480WVU0", "url": "https://www.uniprot.org/uniprotkb/A0A480WVU0" } ], "pmid": "" }, { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "A0A480WVU0", "url": "https://www.uniprot.org/uniprotkb/A0A480WVU0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480WVU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480WVU0" }, { "id": "PF00487", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00487" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fatty acid desaturase", "eco_id": "ECO_0000259", "start_pos": 65, "end_pos": 311, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 201, "end_pos": 203 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480WYQ6-1", "uniprot_ac": "A0A480WYQ6", "uniprot_id": "A0A480WYQ6_PIG", "mass": { "chemical_mass": 21317.0, "monoisotopic_mass": 21317.0 }, "refseq": { "ac": "XP_020920184", "name": "protein shisa-4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920184" }, "gene_names": [ { "name": "SHISA4", "type": "recommended", "evidence": [ { "id": "A0A480WYQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480WYQ6" } ] }, { "name": "SHISA4", "type": "synonym", "evidence": [ { "id": "XP_020920184", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920184" } ] } ], "protein_names": [ { "name": "Shisa family member 4", "type": "synonym", "evidence": [ { "id": "A0A480WYQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480WYQ6/entry#names_and_taxonomy" } ] }, { "name": "protein shisa-4", "type": "synonym", "evidence": [ { "id": "XP_020920184", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920184" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480WYQ6", "url": "https://www.uniprot.org/uniprotkb/A0A480WYQ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SHISA4", "url": "https://www.uniprot.org/uniprotkb/A0A480WYQ6", "locus": { "chromosome": "10", "start_pos": 24162063, "end_pos": 24158688, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000054480", "url": "https://www.ensembl.org/id/ENSSSCG00000054480" } ] } } ], "crossref": [ { "id": "110255661", "url": "https://www.ncbi.nlm.nih.gov/gene/110255661", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053891", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053891", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255661", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255661", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DCYHRFC", "url": "https://omabrowser.org/oma/group/DCYHRFC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480WYQ6", "url": "https://www.orthodb.org/?gene=A0A480WYQ6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31395", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31395", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31395:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31395:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13908", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13908", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27717", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27717", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020920184", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920184", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480WYQ6", "url": "https://www.uniprot.org/uniprotkb/A0A480WYQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480WYQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480WYQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPAGLRGAAPLAVIALLVLGAPLALAGEDCLWYVDRNGSWQPGFNCEFSTFCCGTCYQRYCCRDPTLLITERQQKHCLAFSPKTIAGIASAVILFVAVVATTICCFLCSCCYLYRRRQQLQSPFEGQEIPMTGIPVQPVYPYTQDPKAGPVPPQPGFMYPPSAPAPQYPLYPAGPPVYNPAAPPPYVPPQPSYPGA", "length": 197, "header": "tr|A0A480WYQ6-1|A0A480WYQ6_PIG Isoform 1 of Shisa family member 4 OS=Sus scrofa OX=9823 GN=SHISA4 PE=4 SV=1 CANONICAL=A0A480WYQ6-1" }, "isoforms": [ { "isoform_ac": "A0A480WYQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480WYQ6/entry#A0A480WYQ6-1", "sequence": { "sequence": "MPPAGLRGAAPLAVIALLVLGAPLALAGEDCLWYVDRNGSWQPGFNCEFSTFCCGTCYQRYCCRDPTLLITERQQKHCLAFSPKTIAGIASAVILFVAVVATTICCFLCSCCYLYRRRQQLQSPFEGQEIPMTGIPVQPVYPYTQDPKAGPVPPQPGFMYPPSAPAPQYPLYPAGPPVYNPAAPPPYVPPQPSYPGA", "length": 197, "header": "tr|A0A480WYQ6-1|A0A480WYQ6_PIG Isoform 1 of Shisa family member 4 OS=Sus scrofa OX=9823 GN=SHISA4 PE=4 SV=1 CANONICAL=A0A480WYQ6-1" }, "locus": { "chromosome": "10", "start_pos": 24161059, "end_pos": 24158770, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093449.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093449.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079412.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079412.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480WYQ6", "url": "https://www.uniprot.org/uniprotkb/A0A480WYQ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110255661", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255661", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0MV40-1", "protein_name": "Shisa family member 4", "gene_name": "Shisa4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPPAGPRGVAPLAAVVLLVLGAPLALASEDCLWYLDRNGSWHPGFDCEFFTFCCGTCYQRYCCRDLTLLITERQQKHCLAFSPKTIAGIASAVILFVAVVATTICCFLCSCCYLYRRRQQLQSTFEGQEIPMTGIPMQPVYQYPPDPKAGPGPPQPGFMYPPSGPAPQYPLYPAGPPIYNPAAPPPYMPPQPSYPGA", "length": 197 }, "evidence": [ { "id": "A0A480WYQ6", "url": "https://omabrowser.org/oma/group/A0A480WYQ6/", 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480Y8S6-1", "uniprot_ac": "A0A480Y8S6", "uniprot_id": "A0A480Y8S6_PIG", "mass": { "chemical_mass": 50669.0, "monoisotopic_mass": 50669.0 }, "refseq": {}, "gene_names": [ { "name": "SLC38A6", "type": "recommended", "evidence": [ { "id": "A0A480Y8S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8S6" } ] } ], "protein_names": [ { "name": "Solute carrier family 38 member 6", "type": "synonym", "evidence": [ { "id": "A0A480Y8S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8S6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480Y8S6", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8S6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC38A6", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8S6", "locus": { "chromosome": "1", "start_pos": 189988552, "end_pos": 189923323, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005092", "url": "https://www.ensembl.org/id/ENSSSCG00000005092" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005092", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005092", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KARMQNV", "url": "https://omabrowser.org/oma/group/KARMQNV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22950", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22950", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22950:SF366", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22950:SF366", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A480Y8S6", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8S6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480Y8S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8S6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRV0", "url": "https://www.uniprot.org/uniprotkb/F1SRV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRV0-1", "url": "https://www.uniprot.org/uniprotkb/F1SRV0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAPWGTISAEPGWFVSTQQIEEAEAEELSPLLSNELHRQGSPGVSFGFSVFNLMNAIMGSGILGLAYVMAHTGILGFSLLLLMVALLASYSVHLLLSMCIQTAVTSYEDLGLFAFGLPGKVVVAGTIIIQNIGAMSSYLLIIKTELPAAISEFLSGDHSGSWYLDGETLLIIICVGIVFPLALLPKIGFLGYTSSLSFFFMVFFAIVIIIKKWSIPCPLTLNYIERYFQISNATDDCKPKLFHFSKESAYAIPTMAFSFLCHTSILPIYCELQSPSKKRMQNVTNTAIALSFLIYFISALFGYLTFYDNVASELLQGYSKYLPHDVVVMTVKLCILFAVLLTVPLIHFPARKALMMIFFSNFPFSWIRHFLITLALNIIIVLLAIYVPDIRNVFGVIGSSTSTCLIFVFPGLFYLRLSREDFLSWKKLGAFVLLIFGILVGNFSLALVIFNWINK", "length": 456, "header": "tr|A0A480Y8S6-1|A0A480Y8S6_PIG Isoform 1 of Solute carrier family 38 member 6 OS=Sus scrofa OX=9823 GN=SLC38A6 PE=3 SV=1 CANONICAL=A0A480Y8S6-1" }, "isoforms": [ { "isoform_ac": "A0A480Y8S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8S6/entry#A0A480Y8S6-1", "sequence": { "sequence": "MEAPWGTISAEPGWFVSTQQIEEAEAEELSPLLSNELHRQGSPGVSFGFSVFNLMNAIMGSGILGLAYVMAHTGILGFSLLLLMVALLASYSVHLLLSMCIQTAVTSYEDLGLFAFGLPGKVVVAGTIIIQNIGAMSSYLLIIKTELPAAISEFLSGDHSGSWYLDGETLLIIICVGIVFPLALLPKIGFLGYTSSLSFFFMVFFAIVIIIKKWSIPCPLTLNYIERYFQISNATDDCKPKLFHFSKESAYAIPTMAFSFLCHTSILPIYCELQSPSKKRMQNVTNTAIALSFLIYFISALFGYLTFYDNVASELLQGYSKYLPHDVVVMTVKLCILFAVLLTVPLIHFPARKALMMIFFSNFPFSWIRHFLITLALNIIIVLLAIYVPDIRNVFGVIGSSTSTCLIFVFPGLFYLRLSREDFLSWKKLGAFVLLIFGILVGNFSLALVIFNWINK", "length": 456, "header": "tr|A0A480Y8S6-1|A0A480Y8S6_PIG Isoform 1 of Solute carrier family 38 member 6 OS=Sus scrofa OX=9823 GN=SLC38A6 PE=3 SV=1 CANONICAL=A0A480Y8S6-1" }, "locus": { "chromosome": "1", "start_pos": 189987233, "end_pos": 189923437, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052719.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052719.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050477.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050477.2" } ] } }, { "isoform_ac": "F1SRV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8S6/entry#F1SRV0-1", "sequence": { "sequence": "MEAPWGTISAEPGWFVSTQQIEEAEAEELSPLLSNELHRQGSPGVSFGFSVFNLMNAIMGSGILGLAYVMAHTGILGFSLLLLMVALLASYSVHLLLSMCIQTAVTSYEDLGLFAFGLPGKVIFFFSSLSMSSYLLIIKTELPAAISEFLSGDHSGSWYLDGETLLIIICVGIVFPLALLPKIGFLGYTSSLSFFFMVFFAIVIIIKKWSIPCPLTLNYIERYFQISNATDDCKPKLFHFSKESAYAIPTMAFSFLCHTSILPIYCELQSPSKKRMQNVTNTAIALSFLIYFISALFGYLTFYDNVASELLQGYSKYLPHDVVVMTVKLCILFAVLLTVPLIHFPARKALMMIFFSNFPFSWIRHFLITLALNIIIVLLAIYVPDIRNVFGVIGSSTSTCLIFVFPGLFYLRLSREDFLSWKKLGAFVLLIFGILVGNFSLALVIFNWINK", "length": 451, "header": "tr|F1SRV0-1|A0A480Y8S6_PIG Computationally mapped isoform of Solute carrier family 38 member 6 OS=Sus scrofa OX=9823 GN=SLC38A6 PE=3 SV=3 CANONICAL=A0A480Y8S6-1" }, "locus": { "chromosome": "1", "start_pos": 189987233, "end_pos": 189923437, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005612.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005612.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005471.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005471.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRV0", "url": "https://www.uniprot.org/uniprotkb/F1SRV0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1N3L7-1", "protein_name": "Solute carrier family 38 member 6", "gene_name": "SLC38A6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEVPAGVINAEPGWFVSTQEPEEAEAEESSPLLSNEVHTQRSRGASFGFSVFNLMNAIMGSGILGLAYVMAHTGILGFSFLLLIVALLASYSVHLLLSLCIQTAVTSYEDLGLFAFGLPGKVMVASTIIIQNIGAMSSYLLIIKTELPATISEFLSGDYSGSWYLDGDTLLIIICVGIVFPLALLPKIGFLGYTSSLSFFFMVFFALVVIIKKWSIPCPLTLNYVEQYFQISSATDDCKPKLFHFSKESAYAIPTMAFSFLCHTSILPIYCELQSPSKKRMQNVTNTAIALSFLIYFISALFGYLTFYDSVASELLQGYSKYLPHDVVIMTVKLCILFSVLLTVPLIHFPARKALMMMFFSNFPFSWIRHSLITLALNIVIVLLAIYVPDIRNVFGIVGSSTSTCLIFVFPGLFYLKMSREDFLSWKKLGAFVLLIFGILVGNFSLALIIFNWINK", "length": 456 }, "evidence": [ { "id": "A0A480Y8S6", "url": "https://omabrowser.org/oma/group/A0A480Y8S6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BXH7-1", "protein_name": "Solute carrier family 38 member 6", "gene_name": "SLC38A6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEALPRGAQRGWYLSARRQRDCGQGEDGDDDSEEDGETAPLLPAASGRGSSQRGSSFGLSVFNLMNAIMGSGILGLSYAMAGTGVLGFSALLLMVASLASYSVFLLLSMCTQTAVTSYEDLGLFAFGSAGKVLVATTIIIQNIGAMSSYLLIVKSELPGAVAGFLSGDGSGSWYLDGRLLLLITSVCIVFPLALLPKIGFLGYTSSLSFFFMVYFALVIMIKKWSIPCPLPLGSAIETLQVSNSTADCKAKLFHLSKESAYAIPTMAFSFLCHTSVLPIYCELQSPSKSRMQNVAVTGIGLSFIIYFMSALFGYLTFYDKVDSELLRGYSRYLPHDTVIMTVKLAILFSVLLTVPLIHFPARKAVFLVFFSHLPVSWICHILVTLVLNAIIVLFAMYVPDIKNVFGVVGSTTSTCLLFVYPGLFYLKLSREDFLSPHKLGACALVIFGICVGLLSLVLIILNWINQ", "length": 466 }, "evidence": [ { "id": "A0A480Y8S6", "url": "https://omabrowser.org/oma/group/A0A480Y8S6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3UVW3-1", "protein_name": "Solute carrier family 38 member 6", "gene_name": "Slc38a6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQASRHSIQAEPGWYVSAQQPEEAVAADEWSPLLSNEPHRQGSSGASFGLSVFNVMNAIMGSGILGLAYVMANTGILGFSFLLLFVALLASYSVHLLLAMCIHTAVTSYEDLGLFAFGLPGKVVVAGTIIIQNIGAMSSYLLIIKTELPAAISEFLPSDHSGSWYLDGQMLLIIICVGIVFPLSLLPKIGFLGYTSSLSFFFMVFFALVVVIKKWAVPCPVTLDCINEVFQISNATDDCKPKLFHFSKESVYAIPTMAFSFLCHTSVLPIYCELQSPSKKRMQNVTNTAIALSFLVYFVSALFGYLTFYDKVESELLQGYSKYLPHDVIVMAVKLCILFAVLLTAPLIHFPARKALMMILFSNYPFSWIRHSLTTAALNAIIVVLAIYVPDIRNVFGVVGASTSTCLIFVFPGLFYLKLSREDFLSWKKLGALFLLLTGAVVGSFSLVLIIFDWVNK", "length": 457 }, "evidence": [ { "id": "A0A480Y8S6", "url": "https://omabrowser.org/oma/group/A0A480Y8S6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P38176-1", "protein_name": "Vacuolar amino acid transporter 5", "gene_name": "AVT5", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MPSNVRSGVLTLLHTACGAGVLAMPFAFKPFGLMPGLITLTFCGICSLCGLLLQTRIAKYVPKSENASFAKLTQLINPSISVVFDFAIAVKCFGVGVSYLIIVGDLVPQIVQSIFYRNDDNMSGSQEHHMFLDRRLYITLIIVFVISPLCFKRSLNSLRYASMIAIVSVAYLSGLIIYHFVNRHQLERGQVYFMVPHGDSQSHSPLTTLPIFVFAYTCHHNMFSVINEQVDKSFKVIRRIPIFAIVLAYFLYIIIGGTGYMTFGENIVGNILTLYPNSISTTIGRLAMLLLVMLAFPLQCHPCRSSVKNIIIFIENFRKGKLYDNRASFIPLDNFNSEDPQEAPTQQNNEEPNLRSESLRHINIITLCILLFSYLLAISITSLAKVLAIVGATGSTSISFILPGLFGYKLIGSEFTGTNERVPTSIKIFKYLSLSLFIWGIAVMVASLSAIVFLGTSSH", "length": 459 }, "evidence": [ { "id": "A0A480Y8S6", "url": "https://omabrowser.org/oma/group/A0A480Y8S6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q6WWW3-1", "protein_name": "Solute carrier family 38 member 6", "gene_name": "Slc38a6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQASRYSIEAEPGWYVSVQQPEEAVAAEEWSPLLSNEPRRQGSSGASFGLSVFNVMNAIMGSGILGLAYVMANTGILGFSFLLLLVALLASYSVHLLLAMCIHTAVTSYEDLGLFAFGLPGKVVVAGTIIIQNIGAMSSYLLIIKTELPAAISEVLPSDHSGAWYLDGQMLLIIICVGIVFPLSLLPKIGFLGYTSSLSFFFMVFFALVVVIKKWAVPCPLTLNCINAVFQISNATDDCKPKLFHFSKESVYAIPTMAFSFLCHTSVLPIYCELRSPSKKRMQNVTNTAIALSFLVYFVSALFGYLTFYDKVESELLQGYSKYLPHDAAVMAVKLCILFAVLLTVPLIHFPARKALMMILFSNYPFSWIRHSLTTLALNIIIVLLAIYVPDIRNVFGVVGASTSTCLIFVFPGLFYLKLSREDFLSWKKLGALSLLSTGTVVGSFSLVLIILDWVNK", "length": 457 }, "evidence": [ { "id": "A0A480Y8S6", "url": "https://omabrowser.org/oma/group/A0A480Y8S6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8IZM9-1", "protein_name": "Solute carrier family 38 member 6", "gene_name": "SLC38A6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEASWGSFNAERGWYVSVQQPEEAEAEELSPLLSNELHRQRSPGVSFGLSVFNLMNAIMGSGILGLAYVLANTGVFGFSFLLLTVALLASYSVHLLLSMCIQTAVTSYEDLGLFAFGLPGKLVVAGTIIIQNIGAMSSYLLIIKTELPAAIAEFLTGDYSRYWYLDGQTLLIIICVGIVFPLALLPKIGFLGYTSSLSFFFMMFFALVVIIKKWSIPCPLTLNYVEKGFQISNVTDDCKPKLFHFSKESAYALPTMAFSFLCHTSILPIYCELQSPSKKRMQNVTNTAIALSFLIYFISALFGYLTFYDKVESELLKGYSKYLSHDVVVMTVKLCILFAVLLTVPLIHFPARKAVTMMFFSNFPFSWIRHFLITLALNIIIVLLAIYVPDIRNVFGVVGASTSTCLIFIFPGLFYLKLSREDFLSWKKLGAFVLLIFGILVGNFSLALIIFDWINK", "length": 456 }, "evidence": [ { "id": "A0A480Y8S6", "url": "https://omabrowser.org/oma/group/A0A480Y8S6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9LI61-1", "protein_name": "Amino acid transporter AVT6A", "gene_name": "AVT6A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MTVVGDVAPIPRRNSSTCSNDIAAPLLPECHGDEVAHDEFNGASFSGAVFNLATTIIGAGIMALPATMKILGLGLGITMIVVMAFLTDASIEFLLRFSKAGKNRSYGGLMGGSFGNPGRILLQVAVLVNNIGVLIVYMIIIGDVLAGKTEDGIHHFGVLEGWFGHHWWNGRAAILLITTLGVFAPLACFKRIDSLKFTSALSVALAVVFLIITAGISIMKLISGGVAMPRLLPDVTDLTSFWNLFTVVPVLVTAFICHYNVHSIQNELEDPSQIRPVVRSALMLCSSVYIMTSIFGFLLFGDDTLDDVLANFDTDLGIPFGSILNDAVRVSYALHLMLVFPIVFYPLRINIDGLLFPSARSLSTSNVRFGCLTAGLISVIFLGANFIPSIWDAFQFTGATAAVCLGFIFPASIILKDRHDKATNRDTTLAIFMIVLAVLSNAIAIYSDAYALFKKNAPRE", "length": 460 }, "evidence": [ { "id": "A0A480Y8S6", "url": "https://omabrowser.org/oma/group/A0A480Y8S6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A480Y8S6", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8S6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "glutamine transport", "id": "GO:0006868", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006868", "evidence": [ { "database": "UniProtKB", "id": "A0A480Y8S6", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8S6" } ], "pmid": "" }, { "name": "amino acid transmembrane transport", "id": "GO:0003333", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003333", "evidence": [ { "database": "UniProtKB", "id": "A0A480Y8S6", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8S6" } ], "pmid": "" }, { "name": "amino acid transport", "id": "GO:0006865", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006865", "evidence": [ { "database": "UniProtKB", "id": "A0A480Y8S6", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8S6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "L-glutamine transmembrane transporter activity", "id": "GO:0015186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015186", "evidence": [ { "database": "UniProtKB", "id": "A0A480Y8S6", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8S6" } ], "pmid": "" }, { "name": "L-glutamate transmembrane transporter activity", "id": "GO:0005313", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005313", "evidence": [ { "database": "UniProtKB", "id": "A0A480Y8S6", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8S6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 233, "end_pos": 235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 443, "end_pos": 445, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480Y8S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480Y8S6" }, { "id": "PF01490", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01490" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Amino acid transporter transmembrane", "eco_id": "ECO_0000259", "start_pos": 46, "end_pos": 450, "start_aa": "Ser", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 233, "end_pos": 235 }, { "start_pos": 283, "end_pos": 285 }, { "start_pos": 443, "end_pos": 445 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A480YSZ7-1", "uniprot_ac": "A0A480YSZ7", "uniprot_id": "A0A480YSZ7_PIG", "mass": { "chemical_mass": 101548.0, "monoisotopic_mass": 101548.0 }, "refseq": { "ac": "XP_020929420", "name": "MLX-interacting protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929420" }, "gene_names": [ { "name": "MLXIP", "type": "recommended", "evidence": [ { "id": "A0A480YSZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480YSZ7" } ] }, { "name": "MLXIP", "type": "synonym", "evidence": [ { "id": "XP_020929420", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929420" } ] } ], "protein_names": [ { "name": "MLX interacting protein", "type": "synonym", "evidence": [ { "id": "A0A480YSZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480YSZ7/entry#names_and_taxonomy" } ] }, { "name": "MLX-interacting protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020929420", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929420" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A480YSZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480YSZ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MLXIP", "url": "https://www.uniprot.org/uniprotkb/A0A480YSZ7", "locus": { "chromosome": "14", "start_pos": 30577661, "end_pos": 30646243, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009794", "url": "https://www.ensembl.org/id/ENSSSCG00000009794" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009794", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009794", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19688", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19688", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21772", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21772", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156510", "url": "https://www.ncbi.nlm.nih.gov/gene/100156510", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052207", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052207", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TEFHSSI", "url": "https://omabrowser.org/oma/group/TEFHSSI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15741", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15741", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15741:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15741:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020929420", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929420", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480YSZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480YSZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480YSZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480YSZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAEVFLCSPRRPHSRGRAVLLKPQVPEDDDDSDTDEPSPPPASGAATLARGHASAGPPQPRAGSGREEPPRRQQIIHSGHFMVSSPHREHPPKKGYDFDTVNKQTCQTYSFGKTSSCHLSIDASLTKLFECMTLAYSGKLVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQYLEKRKNPVCHFVTPLDGSVEVDEHRRPEAITTEGKYWKSRIEIVIREYHKWRTYFKKRLQQHKDEDLSSLAQDDDMLYWHKHGDGWKTPVPMEEDTLLDTDMLMSEFSDTLFSTLSSHPPVAWPNPREIAHLGNADMIQPGLMPLQPNLDFMDTFEPFQDLFSSSRSIFGSMLPAPASAAAPDPNSPPAQESILPTTALPTSSLPDSFIAPPVVTALDPTNGQGCEHTSQPGDPFVQPAELGPSAPPLTVPQSFLPVFTMPLLSPSPAPAPVSPALHLGPPPATALSPPTPPAFLQPQKFAEVSKSPSVITHTASATLTHDASATTFSQSQGLIITTRYPTPSMSACGLALSPVTRPMTVGPPQPRLTFVHPKPVSLPGVRHKQPPKIVPAPKPEPVSLVLKNARIAPAAFSGPPQAVIMTSGPLKREGMLASTVSQSNMVITPAAITRAPGVTEFHSSILVTDLGHSTGSQPAPVSRLFSPSTVPDSLVKGEQAPLHGGAPSVPATGPSRDCPNSGQASPCASEQSPSPQSPQNNCSGKSTADLKNVAALKNRQMKHISAEQKRRFNIKMGFDTLNSLISNNTKLTSHAITLQKTVEYITKLQQERSQMQEEARRLREEIEELNATILSCQQLLPATGVPVTRRQFDHMRDMFDEYVKSRTLQNWKFWIFSVIIKPLFESFKGVVSTSSLEELHRTALSWLDEHCSLPVLRPTVLNTLRHLSTTTSILTNPSQLPEQAAEAVTRIGKRPGES", "length": 927, "header": "tr|A0A480YSZ7-1|A0A480YSZ7_PIG Isoform 1 of MLX interacting protein OS=Sus scrofa OX=9823 GN=MLXIP PE=4 SV=1 CANONICAL=A0A480YSZ7-1" }, "isoforms": [ { "isoform_ac": "A0A480YSZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A480YSZ7/entry#A0A480YSZ7-1", "sequence": { "sequence": "MAAEVFLCSPRRPHSRGRAVLLKPQVPEDDDDSDTDEPSPPPASGAATLARGHASAGPPQPRAGSGREEPPRRQQIIHSGHFMVSSPHREHPPKKGYDFDTVNKQTCQTYSFGKTSSCHLSIDASLTKLFECMTLAYSGKLVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQYLEKRKNPVCHFVTPLDGSVEVDEHRRPEAITTEGKYWKSRIEIVIREYHKWRTYFKKRLQQHKDEDLSSLAQDDDMLYWHKHGDGWKTPVPMEEDTLLDTDMLMSEFSDTLFSTLSSHPPVAWPNPREIAHLGNADMIQPGLMPLQPNLDFMDTFEPFQDLFSSSRSIFGSMLPAPASAAAPDPNSPPAQESILPTTALPTSSLPDSFIAPPVVTALDPTNGQGCEHTSQPGDPFVQPAELGPSAPPLTVPQSFLPVFTMPLLSPSPAPAPVSPALHLGPPPATALSPPTPPAFLQPQKFAEVSKSPSVITHTASATLTHDASATTFSQSQGLIITTRYPTPSMSACGLALSPVTRPMTVGPPQPRLTFVHPKPVSLPGVRHKQPPKIVPAPKPEPVSLVLKNARIAPAAFSGPPQAVIMTSGPLKREGMLASTVSQSNMVITPAAITRAPGVTEFHSSILVTDLGHSTGSQPAPVSRLFSPSTVPDSLVKGEQAPLHGGAPSVPATGPSRDCPNSGQASPCASEQSPSPQSPQNNCSGKSTADLKNVAALKNRQMKHISAEQKRRFNIKMGFDTLNSLISNNTKLTSHAITLQKTVEYITKLQQERSQMQEEARRLREEIEELNATILSCQQLLPATGVPVTRRQFDHMRDMFDEYVKSRTLQNWKFWIFSVIIKPLFESFKGVVSTSSLEELHRTALSWLDEHCSLPVLRPTVLNTLRHLSTTTSILTNPSQLPEQAAEAVTRIGKRPGES", "length": 927, "header": "tr|A0A480YSZ7-1|A0A480YSZ7_PIG Isoform 1 of MLX interacting protein OS=Sus scrofa OX=9823 GN=MLXIP PE=4 SV=1 CANONICAL=A0A480YSZ7-1" }, "locus": { "chromosome": "14", "start_pos": 30646150, "end_pos": 30579852, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010736.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010736.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010456.5", "url": "https://www.ensembl.org/id/ENSSSCP00000010456.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 464, "start_aa": "Thr", "end_pos": 464, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr464", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 515, "start_aa": "Thr", "end_pos": 515, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr515", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480YSZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480YSZ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZXJ9-1", "protein_name": "MLX interacting protein", "gene_name": "MLXIP", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAADVFMRPAQLLGAAGPLSPRTEPDEDSSDTDDGGASPGGGRRCGPRRGQPPGPQIIHSGHFMVSSPHSEHPPKKGYDFDTVNEQTCQTYQFGAARGGGGAGGRLSIDASLTKLFECMSLAYSGKLVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQYLEKRKNPVCHFVTPLDGSVDVDEHRRPEAIATEGKYWKRRIEIVIREYHKWRTYFKKRLQKHKDEDLSSLVRDDDVVLWQKRRYGRETPVPMEEGSLLDADMLMSEFTDTLFSTLSSHQLVSWPNPREIAHLGNADMIQPGLIPLQPNFDFMDTFEPFQDLFTPSRSSAYFPSVSAVSSATTDSSSHSSQSPVLPTGSLPNTLPSGNISDGLIASSVPSPVIPDVGTDQCSSIRSGGSFIQPADFAPDSSLSGPQTFLPVFQTPLPLLQPAAQQHQSPLPAVPLNTSLSSPPSAFAAPETQKFGLCESTVITHTASATLTHNAPATTFSQSQNLVLATQQPGAGVPCNLAFQTTVLQGQPRPQLQSQLTFALPKAVPLASAGTRPKQSQKIASAPKPETVSLLLKNAFITPAAFQGQSRAVIVTPTPLKREGILTPAMPQSNVKIAPAGIARAPGVTEFRSNILVGPAQQAPSSQQSQSTVSHLFSTNVVQDVLVKGEQVPSHNSSSQVPSPTPSRDCQNSGQASPCTSEQSPSPQSPQNSCSGKLATDSQMAALKTQRMKRTSSEQKRRFNIRIGCSILNSLVSVNSKLISHAITLQKTVEYIAKLQQERTQMQEETRRLREEIEELNAAIISCQQRLPATGVPVTWQRFDHIRSMFDEYVRNNTLQNWKFWIFSIIIKPLFESFNGMVSTASFKDLNQTAIAWLDQHCSLPVLRPMVLSSLRQLSVSTSVLSDPSRLPEQATEAVSRTNETAGET", "length": 917 }, "evidence": [ { "id": "A0A480YSZ7", "url": "https://omabrowser.org/oma/group/A0A480YSZ7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BIZ7-1", "protein_name": "MLX interacting protein", "gene_name": "MLXIP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAADVFMCSQSRPRSRGRAVLLKPQVPEDDDDSDTDEPSPPPASGAATPARGQASAVLPPPKAGSGREEPPRRQQIIHSGHFMVSSPHREHPPKKGYDFDTVNKQTCQTYSFGKTSSCHLSIDASLTKLFECMTLAYSGKLVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQYLEKRKNPVCHFVTPLDGSVEVDEHRRPEAITTEGKYWKSRIEIVIREYHKWRTYFKKRLQQHKDEDLSSLAQDDDMLYWHKHRDGWKTPVPMEEDTLLDTDMLMSEFSDTLFSTLSSHPPVAWPNPREIAHLGNADMIQPGLIPLQPNLDFMDTFEPFQDLFSSSRSIFGSMLPAPASTPAPDPNSPPAQESILPTTALPTDLPTASLPDSFIAPPAAAALDPTSGQGCEHPPQPGDPFMQPADLGPSAPPLSGPQPYLPVFTLPLLSPSPAPPPPSPVLPLGPPPATALNPPTPPTFLQPQKFAEAGKSPSVITHTASATLTHDASATTFSQSQGLIITTRYPPPSGSPYGLALSPVTRPPTVGPPQPRLTFVHPKPVSLPGGRHKQPPKIVPAPKPEPVSVVLKNACLTPAAAFPGQPQAVIMTSGPLKREGMLASTVSQSNVVLTPAALTRAPGVAEFPSSILVTDLGPGPGSQHAPVSRLFPPDSLVKGEQGPLHGGIAQVPATGAGDSALRLDRLGPRRDCPNSGQASPCASEQSPSPQSPQNNCSGKSPADPKNVAVLKNRQMKHISAEQKRRFNIKMGFDTLNSLISNNTKLTSHAITLQKTVEYITKLQQERSQMQEEARRLREEIEELNATILSCQQLLPATGVPVTRRQFDHMRDMFDEYVKSRTLQNWKFWIFSVIIKPLFESFKGVVSTSSLDELHRTALSWLDEHCSLPILRPTVLNTLRHLSTTTSILTDPSQLPEQAAEAVSRISQRAGES", "length": 940 }, "evidence": [ { "id": "A0A480YSZ7", "url": "https://omabrowser.org/oma/group/A0A480YSZ7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1M051-1", "protein_name": "MLX interacting protein", "gene_name": "Mlxip", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAADVFMCSPRRPRSRGRSVLLKPQVPEDDDDSDTDEPSPPPPSGVATSARAHASAAPLPPRAGPGREEPPRRQQIIHSGHFMVSSPHREHPPKKGYDFDTVNKQTCQTYSFGKTSSCHLSIDASLTKLFECMTLAYSGKLVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQYLEKRKNPVCHFVTPLDGSVDVDEHRRPEAITTEGKYWKSRIEIVIREYHKWRTYFKKRLQQHKDEDLSSLAQDDDMLYWHKHGDGWKTPVPMEEDSLLDTDMLMSEFSDTLFSTLSSHQPVAWPNPREIAHLGNADMIQPGLIPLQPNLDFMDTFEPFQELFSSSRSIFGSMLPPPTSVPAPDPSSPPSQVEEAGEQTWQGNILPNPALPPVSLPNSLIASSAAPSLDPTEGQGCERTSQSVDPFIQPADFGPSEPPLSVPQPFLPVFTMTLLSPGPAPAPVPTALPLVSPPAPTLNPPTPPAFLQTQTFAGVSTSSPVITHTASATLTHDASATTFSQSQGLVITAHHPTPSPSPCGLALSPIPQPPAVGPPQPHLTFIHPKPVSLTGVRHKQPPKIVPAPKPEAVSLVLKSACIAPAAFTGQPQKVIMTSAPLKREGILASTVSPSSVVIASAAITRASGVTEFLSHSTSSQPSPASRLFSPSAVQDALVKGEQAALHGGPQAPATGSSRDCPNSGQASPCPSEQSPSPQSPQNNCSGKSTDPKNVAALKNRQKHISAEQKRRFNIRMGFNTLNSLISNNSKQTSHAITLQKTMEYITKLQQERMQMQEEARRLREEIEELNTTIISCQQLLPATGVPVNCRQFDHMKDMFDEYVKSRILQNWKFWIFSMIIKPLFESFKGMVSTSSLEEFHRTALSWLDQHCSLPVLRPMVLSTLRQLSTTTSILTDPSQLPEQASEAVTRIGKRSGES", "length": 926 }, "evidence": [ { "id": "A0A480YSZ7", "url": "https://omabrowser.org/oma/group/A0A480YSZ7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2VPU4-1", "protein_name": "MLX-interacting protein", "gene_name": "Mlxip", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"https://omabrowser.org/oma/group/A0A480YSZ7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HAP2-1", "protein_name": "MLX-interacting protein", "gene_name": "MLXIP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAADVFMCSPRRPRSRGRQVLLKPQVSEDDDDSDTDEPSPPPASGAATPARAHASAAPPPPRAGPGREEPPRRQQIIHSGHFMVSSPHREHPPKKGYDFDTVNKQTCQTYSFGKTSSCHLSIDASLTKLFECMTLAYSGKLVSPKWKNFKGLKLQWRDKIRLNNAIWRAWYMQYLEKRKNPVCHFVTPLDGSVDVDEHRRPEAITTEGKYWKSRIEIVIREYHKWRTYFKKRLQQHKDEDLSSLVQDDDMLYWHKHGDGWKTPVPMEEDPLLDTDMLMSEFSDTLFSTLSSHQPVAWPNPREIAHLGNADMIQPGLIPLQPNLDFMDTFEPFQDLFSSSRSIFGSMLPASASAPVPDPNNPPAQESILPTTALPTVSLPDSLIAPPTAPSLAHMDEQGCEHTSRTEDPFIQPTDFGPSEPPLSVPQPFLPVFTMPLLSPSPAPPPISPVLPLVPPPATALNPPAPPTFHQPQKFAGVNKAPSVITHTASATLTHDAPATTFSQSQGLVITTHHPAPSAAPCGLALSPVTRPPQPRLTFVHPKPVSLTGGRPKQPHKIVPAPKPEPVSLVLKNARIAPAAFSGQPQAVIMTSGPLKREGMLASTVSQSNVVIAPAAIARAPGVPEFHSSILVTDLGHGTSSPPAPVSRLFPSTAQDPLGKGEQVPLHGGSPQVTVTGPSRDCPNSGQASPCASEQSPSPQSPQNNCSGKSDPKNVAALKNRQMKHISAEQKRRFNIKMCFDMLNSLISNNSKLTSHAITLQKTVEYITKLQQERGQMQEEARRLREEIEELNATIISCQQLLPATGVPVTRRQFDHMKDMFDEYVKTRTLQNWKFWIFSIIIKPLFESFKGMVSTSSLEELHRTALSWLDQHCSLPILRPMVLSTLRQLSTSTSILTDPAQLPEQASKAVTRIGKRLGES", "length": 919 }, "evidence": [ { "id": "A0A480YSZ7", "url": 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"https://www.uniprot.org/uniprotkb/A0A480YSZ7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "A0A480YSZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480YSZ7" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A480YSZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480YSZ7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A480YSZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480YSZ7" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A480YSZ7", "url": "https://www.uniprot.org/uniprotkb/A0A480YSZ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 710, "end_pos": 712, "annotation": "n_glycosylation_sequon" }, { "start_pos": 756, "end_pos": 758, "annotation": "n_glycosylation_sequon" }, { "start_pos": 799, "end_pos": 801, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A480YSZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A480YSZ7" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 727, "end_pos": 777, "start_aa": "Asn", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 464, 515 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 710, "end_pos": 712 }, { "start_pos": 756, "end_pos": 758 }, { "start_pos": 799, "end_pos": 801 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A481A0E5-1", "uniprot_ac": "A0A481A0E5", "uniprot_id": "A0A481A0E5_PIG", "mass": { "chemical_mass": 33515.0, "monoisotopic_mass": 33515.0 }, "refseq": {}, "gene_names": [ { "name": "MTRES1", "type": "recommended", "evidence": [ { "id": "A0A481A0E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481A0E5" } ] } ], "protein_names": [ { "name": "Mitochondrial transcription rescue factor 1", "type": "synonym", "evidence": [ { "id": "A0A481A0E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481A0E5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A481A0E5", "url": "https://www.uniprot.org/uniprotkb/A0A481A0E5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MTRES1", "url": "https://www.uniprot.org/uniprotkb/A0A481A0E5", "locus": { "chromosome": "1", "start_pos": 73180017, "end_pos": 73162364, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037985", "url": "https://www.ensembl.org/id/ENSSSCG00000037985" } ] } } ], "crossref": [ { "id": "ENSSSCG00000037985", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037985", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR057896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13633", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13633", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13633:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13633:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25818", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25818", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A481A0E5", "url": "https://www.uniprot.org/uniprotkb/A0A481A0E5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481A0E5-1", "url": "https://www.uniprot.org/uniprotkb/A0A481A0E5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRTNAAFCRREHKYSPGCRVFTGCMVCVVRMPGYFTYEIKLSYGLFQVTYAMAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKTLFYNIFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVEDEGDSDEGSDHNEMSEQEEELEDDPSVVKDYKDLDKVVQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSRTVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRWKKLKLPKKSMPK", "length": 291, "header": "tr|A0A481A0E5-1|A0A481A0E5_PIG Isoform 1 of Mitochondrial transcription rescue factor 1 OS=Sus scrofa OX=9823 GN=MTRES1 PE=4 SV=1 CANONICAL=A0A481A0E5-1" }, "isoforms": [ { "isoform_ac": "A0A481A0E5-1", "url": "https://www.uniprot.org/uniprotkb/A0A481A0E5/entry#A0A481A0E5-1", "sequence": { "sequence": "MRTNAAFCRREHKYSPGCRVFTGCMVCVVRMPGYFTYEIKLSYGLFQVTYAMAMTSVRLPSSVLRKPEAWIGLCGALRGTPSHKRCASLNRYICFSSTKLNASNYKTLFYNIFSLRFPGLLISPEYIFPFSTRLKSNINSKKSAEKALQKVEDEGDSDEGSDHNEMSEQEEELEDDPSVVKDYKDLDKVVQSFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSRTVKVGDTLDLLIEDDKAAETETVMRILLKKVLEEKTDSEKYRVVLRRWKKLKLPKKSMPK", "length": 291, "header": "tr|A0A481A0E5-1|A0A481A0E5_PIG Isoform 1 of Mitochondrial transcription rescue factor 1 OS=Sus scrofa OX=9823 GN=MTRES1 PE=4 SV=1 CANONICAL=A0A481A0E5-1" }, "locus": { "chromosome": "1", "start_pos": 73174161, "end_pos": 73166468, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059292.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059292.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056953.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056953.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A481A0E5", "url": "https://www.uniprot.org/uniprotkb/A0A481A0E5" } ], "reference": [ { "type": "PubMed", "id": "32543654", 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"MLSGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLKEKERQLLPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPPPERCPIRASLPPKPRPALDREPRKALTFSLGCPGPAPSPVPLEPVASVAPMPGCCTDLQGWERRVRRNAAELGQEAFWEQELRREQAREREGQARLQALSAATAEHAARLQALDAQARALEAEIQLATEAPGPTSPTASATERLRQDLAAQERQSVEVQGSLSLVGRALEAAEHALKAQAQELEELNRELRQCNLQQFIQQTGAALPPPPRPDRAPPSAQDLLPPAREEPLPGAPQSPALVSSLSPEIAPMRQNSWR", "length": 359, "header": "tr|A0A481AYU6-1|A0A481AYU6_PIG Isoform 1 of Ras association domain-containing protein 7 OS=Sus scrofa OX=9823 GN=RASSF7 PE=4 SV=1 CANONICAL=A0A481AYU6-1" }, "locus": { "chromosome": "2", "start_pos": 332074, "end_pos": 330512, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064340.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064340.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032419.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032419.2" } ] } }, { "isoform_ac": "F1RYX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A481AYU6/entry#F1RYX2-1", "sequence": { "sequence": "MLSGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLKEKERQLLPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPPPERCPIRASLPPKPRPALDREPRKALTFSLGCPGPAPSPVPLEPVASVAPMPGCCTDLQGWERRVRRNAAELGQEAFWEQELRREQAREREGQARLQALSAATAEHAARLQALDAQARALEAEIQLATEAPGPTSPTASATERLRQDLAAQERQSVEVQGSLSLVGRALEAAEHALKAQAQELEELNRELRQCNLQQFIQQTGAALPPPPRPDRAPPSAQLPP", "length": 325, "header": "tr|F1RYX2-1|A0A481AYU6_PIG Computationally mapped isoform of Ras association domain-containing protein 7 OS=Sus scrofa OX=9823 GN=RASSF7 PE=4 SV=3 CANONICAL=A0A481AYU6-1" }, "locus": { "chromosome": "2", "start_pos": 332054, "end_pos": 330512, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014050.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014050.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013665.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013665.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 236, "start_aa": "Thr", "end_pos": 236, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr236", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RYX2", "url": "https://www.uniprot.org/uniprotkb/F1RYX2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512884", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512884", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A481AYU6", "url": "https://www.uniprot.org/uniprotkb/A0A481AYU6" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "A0A481AYU6", "url": "https://www.uniprot.org/uniprotkb/A0A481AYU6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "A0A481AYU6", "url": "https://www.uniprot.org/uniprotkb/A0A481AYU6" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A481AYU6", "url": "https://www.uniprot.org/uniprotkb/A0A481AYU6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A481AYU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481AYU6" }, { "id": "PS50200", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50200" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ras-associating", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 89, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 236 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { 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"count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A481BBL3-1", "uniprot_ac": "A0A481BBL3", "uniprot_id": "A0A481BBL3_PIG", "mass": { "chemical_mass": 53502.0, "monoisotopic_mass": 53502.0 }, "refseq": { "ac": "XP_020943280", "name": "aldehyde dehydrogenase family 8 member A1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943280" }, "gene_names": [ { "name": "ALDH8A1", "type": "recommended", "evidence": [ { "id": "A0A481BBL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3" } ] }, { "name": "ALDH8A1", "type": "synonym", "evidence": [ { "id": "XP_020943280", "database": "RefSeq", "url": 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2-aminomuconic semialdehyde of the kynurenine metabolic pathway in L-tryptophan degradation.", "evidence": [ { "database": "UniProtKB", "id": "A0A481BBL3", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3#function" }, { "database": "UniProtKB", "id": "ARBA00057663", "url": "https://www.uniprot.org/uniprotkb/ARBA00057663#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A481BBL3", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ALDH8A1", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3", "locus": { "chromosome": "1", "start_pos": 29083143, "end_pos": 29060701, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028115", "url": 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"MAGTRAPWMLENFIDGKFLPCNSYLDSYDPSTGDVYCRVPNSGKEEIEAAVEAARAAFPGWSSRSPQERSQVLHRLADLLEESLEELAQAESKDQGKTITLARTMDIPRSVQNFRFFASSILHHTSECTQMDHLGCLHYTVRTPVGIAGLISPWNLPLYLLTWKIAPAIAAGNTVIAKPSELTSVTAWMMCKLLEKAGVPPGVVNIVFGTGPRAGEALVSHPEVPLISFTGSQPTAERITQLSAPHCKKLSLELGGKNPAIIFEDANLEECVPTTVRSSFANQGEICLCTSRIFVQRSIYSEFLKRFVDATRMWKVGIPSDPSASMGALISKAHLEKVRSYIKKARLEGAQILCGEGVDKLNLPPRNQGGYFMLPTVITDIKDESCCMKEEIFGPVTCVVPFDSEEEVIQRANSVKYGLAATVWSGNVGRVHRVAKKLQSGLVWTNCWLIRELNLPFGGMKSSGVGREGAKDSYEFFTEVKTVTVKH", "length": 487, "header": "tr|A0A481BBL3-1|A0A481BBL3_PIG Isoform 1 of 2-aminomuconic semialdehyde dehydrogenase OS=Sus scrofa OX=9823 GN=ALDH8A1 PE=1 SV=1 CANONICAL=A0A481BBL3-1" }, "isoforms": [ { "isoform_ac": "A0A481BBL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3/entry#A0A481BBL3-1", "sequence": { "sequence": "MAGTRAPWMLENFIDGKFLPCNSYLDSYDPSTGDVYCRVPNSGKEEIEAAVEAARAAFPGWSSRSPQERSQVLHRLADLLEESLEELAQAESKDQGKTITLARTMDIPRSVQNFRFFASSILHHTSECTQMDHLGCLHYTVRTPVGIAGLISPWNLPLYLLTWKIAPAIAAGNTVIAKPSELTSVTAWMMCKLLEKAGVPPGVVNIVFGTGPRAGEALVSHPEVPLISFTGSQPTAERITQLSAPHCKKLSLELGGKNPAIIFEDANLEECVPTTVRSSFANQGEICLCTSRIFVQRSIYSEFLKRFVDATRMWKVGIPSDPSASMGALISKAHLEKVRSYIKKARLEGAQILCGEGVDKLNLPPRNQGGYFMLPTVITDIKDESCCMKEEIFGPVTCVVPFDSEEEVIQRANSVKYGLAATVWSGNVGRVHRVAKKLQSGLVWTNCWLIRELNLPFGGMKSSGVGREGAKDSYEFFTEVKTVTVKH", "length": 487, "header": "tr|A0A481BBL3-1|A0A481BBL3_PIG Isoform 1 of 2-aminomuconic semialdehyde dehydrogenase OS=Sus scrofa OX=9823 GN=ALDH8A1 PE=1 SV=1 CANONICAL=A0A481BBL3-1" }, "locus": { "chromosome": "1", "start_pos": 29079321, "end_pos": 29060751, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106764.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106764.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080766.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080766.1" } ] } }, { "isoform_ac": "A0A5G2RL67-1", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3/entry#A0A5G2RL67-1", "sequence": { "sequence": "MAGTRAPWMLENFIDGKFLPCNSYLDSYDPSTGDVYCRVPNSGKEEIEAAVEAARAAFPGWSSRSPQERSQVLHRLADLLEESLEELAQAESKDQGKTITLARTMDIPRSVQNFRFFASSILHHTSECTQMDHLGCLHYTVRTPVGIAGLISPWNLPLYLLTWKIAPAIAAGNTVIAKPSELTSVTAWMMCKLLEKAAPFKFLDFEEESSPCDLRLDILRRIPVTGLPSHPGVPPGVVNIVFGTGPRAGEALVSHPEVPLISFTGSQPTAERITQLSAPHCKKLSLELGGKNPAIIFEDANLEECVPTTVRSSFANQGEICLCTSRIFVQRSIYSEFLKRFVDATRMWKVGIPSDPSASMGALISKAHLEKVRSYIKKARLEGAQILCGEGVDKLNLPPRNQGGYFMLPTVITDIKDESCCMKEEIFGPVTCVVPFDSEEEVIQRANSVKYGLAATVWSGNVGRVHRVAKKLQSGLVWTNCWLIRELNLPFGGMKSSGVGREGAKDSYEFFTEVKTVTVKH", "length": 521, "header": "tr|A0A5G2RL67-1|A0A481BBL3_PIG Computationally mapped isoform of 2-aminomuconic semialdehyde dehydrogenase OS=Sus scrofa OX=9823 GN=ALDH8A1 PE=1 SV=1 CANONICAL=A0A481BBL3-1" }, "locus": { "chromosome": "1", "start_pos": 29079321, "end_pos": 29060751, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086170.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086170.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072988.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072988.1" } ] } }, { "isoform_ac": "A0A8D0TNF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3/entry#A0A8D0TNF9-1", "sequence": { "sequence": "MAGTRAPWMLENFIDGKFLPCNSYLDSYDPSTGDVYCRVPNSGKEEIEAAVEAARAAFPGWSSRSPQERSQVLHRLADLLEESLEELAQAESKDQGKTITLARTMDIPRSVQNFRFFASSILHHTSECTQMDHLGCLHYTVRTPVGIGVPPGVVNIVFGTGPRAGEALVSHPEVPLISFTGSQPTAERITQLSAPHCKKLSLELGGKNPAIIFEDANLEECVPTTVRSSFANQGEICLCTSRIFVQRSIYSEFLKRFVDATRMWKVGIPSDPSASMGALISKAHLEKVRSYIKKARLEGAQILCGEGVDKLNLPPRNQGGYFMLPTVITDIKDESCCMKEEIFGPVTCVVPFDSEEEVIQRANSVKYGLAATVWSGNVGRVHRVAKKLQSGLVWTNCWLIRELNLPFGGMKSSGVGREGAKDSYEFFTEVKTVTVKH", "length": 437, "header": "tr|A0A8D0TNF9-1|A0A481BBL3_PIG Computationally mapped isoform of 2-aminomuconic semialdehyde dehydrogenase OS=Sus scrofa OX=9823 GN=ALDH8A1 PE=1 SV=1 CANONICAL=A0A481BBL3-1" }, "locus": { "chromosome": "1", "start_pos": 29079321, "end_pos": 29060751, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104897.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104897.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076505.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076505.1" } ] } }, { "isoform_ac": "I3LQA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3/entry#I3LQA1-1", "sequence": { "sequence": "MAGTRAPWMLENFIDGKFLPCNSYLDSYDPSTGDVYCRVPNSGKEEIEAAVEAARAAFPGWSSRSPQERSQVLHRLADLLEESLEELAQAESKDQGKTITLARTMDIPRSVQNFRFFASSILHHTSECTQMDHLGCLHYTVRTPVGIAGLISPWNLPLYLLTWKIAPAIAAGNTVIAKPSELTSVTAWMMCKLLEKAGVPPGVVNIVFGTGPRAGEALVSHPEVPLISFTGSQPTAERITQLSAPHCKKLSLELGGKNPAIIFEDANLEECVPTTVRSSFANQVRSYIKKARLEGAQILCGEGVDKLNLPPRNQGGYFMLPTVITDIKDESCCMKEEIFGPVTCVVPFDSEEEVIQRANSVKYGLAATVWSGNVGRVHRVAKKLQSGLVWTNCWLIRELNLPFGGMKSSGVGREGAKDSYEFFTEVKTVTVKH", "length": 433, "header": "tr|I3LQA1-1|A0A481BBL3_PIG Computationally mapped isoform of 2-aminomuconic semialdehyde dehydrogenase OS=Sus scrofa OX=9823 GN=ALDH8A1 PE=1 SV=3 CANONICAL=A0A481BBL3-1" }, "locus": { "chromosome": "1", "start_pos": 29079321, "end_pos": 29060751, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029261.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029261.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026279.3", "url": "https://www.ensembl.org/id/ENSSSCP00000026279.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LQA1", "url": "https://www.uniprot.org/uniprotkb/I3LQA1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738255", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738255", "resource": "KEGG Pathway" }, { "id": "R-SSC-5365859", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5365859", "resource": "Reactome", "description": "RA biosynthesis pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XL16-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAHSEALLVLENFIAGRFVPCSSYIDSYNPSTGDVYCRVPDSGKEEVEAAVRAAKNAFPIWSSKSPLEKSQILNKLADLIEHDLEAFAQAESKDQGKTITFARTVDIPRAVYNFRFFASSILHHTTECTEMASMGCVHYTSRTPVGVAGLISPWNLPLYLLTWKIAPAIACGNTVVAKPSEMTSVTAWMMCKLLEKAGMPHGVVNMVFGTGAKAGEALVCHPDVPLISFTGSTLTAQRITEKSAPHCKKLSLELGGKNPAIIFDDADLSQCIPTTLRSSFANQGEICLCTSRIFVQRGIYSEFVKRFVAETKKWKVGNPSDPTVDVGALISKEHLEKVRSYVKKAKAEGAKILCGEGVDSLALPAGNQKGYFMLPTVIAEIKDESCCMQEEIFGPVTCVVAFDTEEEVVKRANGVKYGLAATVWSSNVGRVHRVARRLQSGLVWTNCWLVRDLNLPFGGMKASGIGREGAKDSYEFFTEVKTITIKH", "length": 487 }, "evidence": [ { "id": "A0A481BBL3", "url": "https://omabrowser.org/oma/group/A0A481BBL3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZXY4-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "Aldh8a1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGKRELLMLENFIGGKFLPCNSYIDSYDPSTGEVYCKVPNSGKEEIEVAVQAAREAFPAWSSRSPQERSLILNRVADVLEQSLEELAQAESKDQGKTLTLARTMDIPRSVLNFRFFASSIQHHVSDCTEMSHLGCMHYTVRTPVGIAGLISPWNLPLYLLTWKIAPAIAAGNTVIAKPSELTSVTAWMFCKLLDKAGVPPGVINVVFGTGPRVGEALVSHPEVPVISFTGSQPTAERITQLSAPHCKKLSLELGGKNPAIIFEDANLEECIPATVRSSFANQGEICLCTSRIFVQRSIYNEFLKRFVEATRKWKVGIPSDPSANMGALISKAHLEKVRSYVTKAHAEGAKILCGEGVDQLSLPLRNQAGYFMLPTVITDIKDESCCMTEEIFGPVTCVVPFDSEEEVIARANGVKYGLGATVWSKDVGRIHRVAKRLQSGLVWTNCWLIRELNLPFGGMKSSGIGREGAKDSYDFFTEIKTITIKY", "length": 487 }, "evidence": [ { "id": "A0A481BBL3", "url": "https://omabrowser.org/oma/group/A0A481BBL3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BH00-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "Aldh8a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGKRELLMLENFIGGKFLPCNSYIDSYDPSTGEVYCKVPNSGKEEIEAAVEAAREAFPAWSSRSPQERSLVLNRLADVLEQSLEELAQAESKDQGKTLTLARTMDIPRSVLNFRFFASSNLHHVSECTQMSHLGCMHYTVRTPVGIAGLISPWNLPLYLLTWKIAPAIAAGNTVIAKPSEMTSVTAWMFCKLLDKAGVPPGVINIVFGTGPRVGEALVSHPEVPLISFTGSQPTAERITQLSAPHCKKLSLELGGKNPAIIFEDANLEECIPATVRSSFANQGEICLCTSRIFVQRSIYSEFLKRFVEATRKWKVGVPSDPSANMGALISKAHLEKVRSYVLKAQTEGARILCGEGVDQLSLPLRNQAGYFMLPTVITDIKDESRCMTEEIFGPVTCVVPFDSEEEVITRANSVRYGLAATVWSKDVGRIHRVAKKLQSGLVWTNCWLIRELNLPFGGMKSSGIGREGAKDSYDFFTEIKTITIKY", "length": 487 }, "evidence": [ { "id": "A0A481BBL3", "url": "https://omabrowser.org/oma/group/A0A481BBL3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGTNALLMLENFIDGKFLPCSSYIDSYDPSTGEVYCRVPNSGKDEIEAAVKAAREAFPSWSSRSPQERSRVLNQVADLLEQSLEEFAQAESKDQGKTLALARTMDIPRSVQNFRFFASSSLHHTSECTQMDHLGCMHYTVRAPVGVAGLISPWNLPLYLLTWKIAPAMAAGNTVIAKPSELTSVTAWMLCKLLDKAGVPPGVVNIVFGTGPRVGEALVSHPEVPLISFTGSQPTAERITQLSAPHCKKLSLELGGKNPAIIFEDANLDECIPATVRSSFANQGEICLCTSRIFVQKSIYSEFLKRFVEATRKWKVGIPSDPLVSIGALISKAHLEKVRSYVKRALAEGAQIWCGEGVDKLSLPARNQAGYFMLPTVITDIKDESCCMTEEIFGPVTCVVPFDSEEEVIERANNVKYGLAATVWSSNVGRVHRVAKKLQSGLVWTNCWLIRELNLPFGGMKSSGIGREGAKDSYDFFTEIKTITVKH", "length": 487 }, "evidence": [ { "id": "A0A481BBL3", "url": "https://omabrowser.org/oma/group/A0A481BBL3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9S795-1", "protein_name": "Aminoaldehyde dehydrogenase ALDH10A8, chloroplastic", "gene_name": "ALDH10A8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAIPMPTRQLFIDGEWREPILKKRIPIVNPATEEVIGDIPAATTEDVDVAVNAARRALSRNKGKDWAKAPGAVRAKYLRAIAAKVNERKTDLAKLEALDCGKPLDEAVWDMDDVAGCFEFYADLAEGLDAKQKAPVSLPMESFKSYVLKQPLGVVGLITPWNYPLLMAVWKVAPSLAAGCTAILKPSELASVTCLELADICREVGLPPGVLNVLTGFGSEAGAPLASHPGVDKIAFTGSFATGSKVMTAAAQLVKPVSMELGGKSPLIVFDDVDLDKAAEWALFGCFWTNGQICSATSRLLVHESIASEFIEKLVKWSKNIKISDPMEEGCRLGPVVSKGQYEKILKFISTAKSEGATILHGGSRPEHLEKGFFIEPTIITDVTTSMQIWREEVFGPVLCVKTFASEDEAIELANDSHYGLGAAVISNDTERCDRISEAFEAGIVWINCSQPCFTQAPWGGVKRSGFGRELGEWGLDNYLSVKQVTLYTSNDPWGWYKSPN", "length": 501 }, "evidence": [ { "id": "A0A481BBL3", "url": "https://omabrowser.org/oma/group/A0A481BBL3/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A481BBL3", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "retinoic acid metabolic process", "id": "GO:0042573", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042573", "evidence": [ { "database": "UniProtKB", "id": "A0A481BBL3", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3" } ], "pmid": "" }, { "name": "retinal metabolic process", "id": "GO:0042574", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042574", "evidence": [ { "database": "UniProtKB", "id": "A0A481BBL3", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "retinal dehydrogenase (NAD+) activity", "id": "GO:0001758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001758", "evidence": [ { "database": "UniProtKB", "id": "A0A481BBL3", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3" } ], "pmid": "" }, { "name": "aminomuconate-semialdehyde dehydrogenase activity", "id": "GO:0047102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047102", "evidence": [ { "database": "UniProtKB", "id": "A0A481BBL3", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3" } ], "pmid": "" }, { "name": "aldehyde dehydrogenase [NAD(P)+] activity", "id": "GO:0004030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004030", "evidence": [ { "database": "UniProtKB", "id": "A0A481BBL3", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor", "id": "GO:0016620", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016620", "evidence": [ { "database": "UniProtKB", "id": "A0A481BBL3", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "14469", "name": "", "equation": "2-aminomuconate 6-semialdehyde + NAD(+) + H2O = (2Z,4E)-2-aminomuconate + NADH + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "14469", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/14469" } ] }, { "id": "R-SSC-5696101", "name": "ALDH8A1 oxidises 9cRAL to 9cRA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-5362565" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5696101", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696101" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-5362565", "participant_name": "9cRAL [cytosol]", "crossref": [ { "id": "78273", "database": "ChEBI", "url": "" }, { "id": "ZINC000022066345", "database": "ZINC", "url": "" }, { "id": "HMDB0006218", "database": "HMDB Metabolite", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A481BBL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481BBL3" }, { "id": "PF00171", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00171" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aldehyde dehydrogenase", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 483, "start_aa": "Tyr", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9769733", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9769733", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9769739", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9769739", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9769743", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9769743", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001929601", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929601", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A481BLI9", "url": "https://www.uniprot.org/uniprotkb/A0A481BLI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481BLI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A481BLI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQRSPHPLMLFLLLASVCGKHGLVGQPVDGGEDPKSADPRWGQMKSRNQSRPLLPTDFHKDTVTNEWIADGEEDEDYLDLEKIFGDDDDYIDIVDAVSPADPMASAGNVLQLFPGKSRIQRLNILNAKFAFNLYRALKEQASASDNIFLAPVGISTAMGMLCLGLRGETHKQVHAALHFTDFVNASSKYELGTIHNLFRKLTHRLFRRDFGYTLRAVNDLYVQRQFPILDDFRTKVRQYYFAEVQAADFADPAFLSETNHHVARLTKGLIKDTLQDIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNEREVVKVPMMQTKGAFLAASDQELDCEILQLDYVGGVSMLVVVPHKLSGMKTLEAQLTPQVVEKWQKSMTNRTREVLLPKFKLEKDYNLVEALRSVGVTALFDRNSNLTGISDQRIAIDLFKHHGTITVNEEGTQAAAVTTVGFMPLSTQARFSVDRPFLFLIHEHRTGCLLFMGRVANPARS", "length": 495, "header": "tr|A0A481BLI9-1|A0A481BLI9_PIG Isoform 1 of Serpin family D member 1 OS=Sus scrofa OX=9823 GN=SERPIND1 PE=1 SV=1 CANONICAL=A0A481BLI9-1" }, "isoforms": [ { "isoform_ac": "A0A481BLI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A481BLI9/entry#A0A481BLI9-1", "sequence": { "sequence": "MQRSPHPLMLFLLLASVCGKHGLVGQPVDGGEDPKSADPRWGQMKSRNQSRPLLPTDFHKDTVTNEWIADGEEDEDYLDLEKIFGDDDDYIDIVDAVSPADPMASAGNVLQLFPGKSRIQRLNILNAKFAFNLYRALKEQASASDNIFLAPVGISTAMGMLCLGLRGETHKQVHAALHFTDFVNASSKYELGTIHNLFRKLTHRLFRRDFGYTLRAVNDLYVQRQFPILDDFRTKVRQYYFAEVQAADFADPAFLSETNHHVARLTKGLIKDTLQDIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNEREVVKVPMMQTKGAFLAASDQELDCEILQLDYVGGVSMLVVVPHKLSGMKTLEAQLTPQVVEKWQKSMTNRTREVLLPKFKLEKDYNLVEALRSVGVTALFDRNSNLTGISDQRIAIDLFKHHGTITVNEEGTQAAAVTTVGFMPLSTQARFSVDRPFLFLIHEHRTGCLLFMGRVANPARS", "length": 495, "header": "tr|A0A481BLI9-1|A0A481BLI9_PIG Isoform 1 of Serpin family D member 1 OS=Sus scrofa OX=9823 GN=SERPIND1 PE=1 SV=1 CANONICAL=A0A481BLI9-1" }, "locus": { "chromosome": "14", "start_pos": 50435862, "end_pos": 50430262, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011054.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011054.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010766.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010766.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A481BLI9", "url": "https://www.uniprot.org/uniprotkb/A0A481BLI9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155945", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155945", "resource": "KEGG Pathway" }, { "id": "R-SSC-381426", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "resource": "Reactome", "description": "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" }, { "id": "R-SSC-8957275", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "resource": "Reactome", "description": "Post-translational protein phosphorylation" }, { "id": "R-SSC-9769733", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9769733", "resource": "Reactome", "description": "Fibrin formation" }, { "id": "R-SSC-9769739", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9769739", "resource": "Reactome", "description": "Regulation of clotting cascade" }, { "id": "R-SSC-9769743", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9769743", "resource": "Reactome", "description": "Amplification and propagation of coagulation cascade" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZRE8-1", "protein_name": "Serpin family D member 1", "gene_name": "SERPIND1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAVYSKRMKFLFPLLALAVIITSTFCGIKDFSDHFESLKDAHTHENGTYNMPDLPLEFHRENTITNDLIPEEEEEEDYLDLDKILGEDDYSDIIDAAPHIVSEIQQGNILELFQGKTRIQRLNILNANFGFNLYRSVADKANSSDNILMAPVGISTAMAMISLGLKGQTQQEVLSVLGFEDFINASAKYELMTVHNLFRKLTHRLFRRNFGYTLRSVNDLYIRKDFSILNDFRNNMKTYYFADAQPADFSDPNFITKTNERILKLTKGLIKEALVNVNPTTLMMILNCLYFKGTWENKFPVEMTTKRSFRLNEKQTIKVPMMQTKGNFLAAADPELDCGVIQLPFVGNISMLIVLPHKLSGMKALEKQITPQVVEKWQKSMTNRTREVVLPKFKLEKNYNLIGFLRSMGIEELFSEKGNYCGVSEEKVSIDRFNHQGTITVNEEGTEAGAITNVGFMPLSTQIRFIVDRPFLFLIYEHRTNCLLFMGRVVNPAKP", "length": 495 }, "evidence": [ { "id": "A0A481BLI9", "url": "https://omabrowser.org/oma/group/A0A481BLI9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F6R4P6-1", "protein_name": "Serpin family D member 1", "gene_name": "SERPIND1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MWSRSCWAVTRHTAGLCADEAGGRCSICDLCTLEDLDCSPAPKVTEERGRPWPIPPLQSHFAPAAQSSSGMWCPLRPLLLALLLASACRTLGPWGQRDDGGGEPESMEPRWGRLKGSNASGPLPPAAFHEENTVTGEWAADGEEEEDYLDLEKIFGEDDNYSDVVDAAPPTRPGAGAGSVLPLFPGKSRVQRLNLLNAQFAFDLYRALAARVGAADNVFLAPVGVSAAMAMLSLGLAGDTHQEVHTALRFAEFVNASAAYELGTVHNLFRKLIHRLFRRNFGYTLRSVSDLYVQKQLPVLDDFKTQVREYYFAEVRAADFSDPAFLAHTNRHVARLTKGLIRDALQDVDPATQMLLLNCLYFKGSWVNKFPVEMTHNHNFRLNEREVVKVPMMQTKGAFLAASDQELDCDVLRLEYVGGISMLVVVPHKLSGMKTLESQLTPQAVERWQRSMTNRTREVLLPKFKLEKDYDLVGALRALGVTALFDKHSNTTGITGQRIVIDLFKHQGTITVNEEGTQAAAVTAVGFMPLSTQVRFSVDRPFLFLIYEHRTSCLLFLGRVANPTRP", "length": 566 }, "evidence": [ { "id": "A0A481BLI9", "url": "https://omabrowser.org/oma/group/A0A481BLI9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HFZ7-1", "protein_name": "Heparin cofactor 2", "gene_name": "Serpind1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKHPLHPLLLSVILSVCVGSNGLAEQVANENVSVSFLPANFHKENTVTNDWIPEGEEEDDYLDLEKLFSEDDDYIYIIDAVSPTDAESSAGNILQLFQGKSRIQRLNIINAKFAFNLYRVLKDKATTSENIFIAPVGISTAMGMLSLGLSGETHEEVHSVLHFKDFVNASSKYEITTIHNLFRKLTHRLFRRNFGYTLQSANGLYIQKQLPVREDFKADMREFYFAEAQVADFSDPAFILKANNHILKLTKGLIKAALENIDPATQMMILNCIYFKGTWVNKFPVEMTHSHNFRLNEREVIKVSMMQTKGNFLAASDQELDCDILQLEYVGGISMLIVIPRKLSGMKTLEAQLTPQVVERWQKSMTNRTREVLLPKFKLEKNYNLVEVLKSMGITKVFDKNGNMSGISDQRITVDLFKHQSTITVDEEGTQAAAVTTVGFMPLSTQVRFAVDRPFLFLVYEHRTSCLLFMGRVANPTRS", "length": 479 }, "evidence": [ { "id": "A0A481BLI9", "url": "https://omabrowser.org/oma/group/A0A481BLI9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P05546-1", "protein_name": "Heparin cofactor 2", "gene_name": 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Peptide", "id": "ENSSSCP00000034825.3", "url": "https://www.ensembl.org/id/ENSSSCP00000034825.3" } ] } }, { "isoform_ac": "A0A8D1RL50-1", "url": "https://www.uniprot.org/uniprotkb/A0A481BXD4/entry#A0A8D1RL50-1", "sequence": { "sequence": "MLLLRCHLKQASPQKVLCRFCAAMGKLQSKLKHSTYRYSPDGFIEERMQTKAFQQYSPAHVDAVSVVAALNSDLCVSGGKDKTVVAYNWRTGHVVKRFKGHDREITKIACIHKSNQFFSASRDKMVMMWELQGPSQPRQQFSGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVGTGQCVEKASVSRNLVTHLCWVPREPYILQTSEDKTIRLWDSRGLQIAHTFPTKQHIQTYCEVSEDGHRCISCSSGFGGEGCEATLWDLRQTRNRICEYKGHFQTVASCVFLPRALASMPVIATSSHDCKVKIWNEDTGVCLFTLSLDGSGPLTSLAVADTISLLCASFSRGIHLLRVDHSRGLELREVAAF", "length": 366, "header": "tr|A0A8D1RL50-1|A0A481BXD4_PIG Computationally mapped isoform of WD repeat domain 31 OS=Sus scrofa OX=9823 GN=WDR31 PE=4 SV=1 CANONICAL=A0A481BXD4-1" }, "locus": { "chromosome": "1", "start_pos": 253959642, "end_pos": 253948666, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042639.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042639.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059102.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059102.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1RL50", "url": "https://www.uniprot.org/uniprotkb/A0A8D1RL50" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100622202", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622202", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { 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"authors" ] } ] }, { "uniprot_canonical_ac": "A0A481CBJ8-1", "uniprot_ac": "A0A481CBJ8", "uniprot_id": "A0A481CBJ8_PIG", "mass": { "chemical_mass": 56367.0, "monoisotopic_mass": 56367.0 }, "refseq": { "ac": "XP_001928378", "name": "lysophospholipid acyltransferase 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928378" }, "gene_names": [ { "name": "MBOAT1", "type": "recommended", "evidence": [ { "id": "A0A481CBJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481CBJ8" } ] }, { "name": "MBOAT1", "type": "synonym", "evidence": [ { "id": "XP_001928378", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928378" } ] } ], "protein_names": [ { "name": "Membrane bound O-acyltransferase domain containing 1", "type": "synonym", "evidence": [ { "id": "A0A481CBJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481CBJ8/entry#names_and_taxonomy" } ] }, { "name": "lysophospholipid acyltransferase 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001928378", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928378" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A481CBJ8", "url": "https://www.uniprot.org/uniprotkb/A0A481CBJ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MBOAT1", "url": "https://www.uniprot.org/uniprotkb/A0A481CBJ8", "locus": { "chromosome": "7", "start_pos": 15532015, "end_pos": 15643692, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001078", "url": "https://www.ensembl.org/id/ENSSSCG00000001078" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001078", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001078", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152017", "url": "https://www.ncbi.nlm.nih.gov/gene/100152017", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049941", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049941", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152017", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152017", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YVVMQAA", "url": "https://omabrowser.org/oma/group/YVVMQAA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A481CBJ8", "url": "https://www.orthodb.org/?gene=A0A481CBJ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13906", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13906", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13906:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13906:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03062", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03062", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1482801", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482801", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1482839", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482839", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001928378", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928378", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A481CBJ8", "url": "https://www.uniprot.org/uniprotkb/A0A481CBJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481CBJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CBJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUH2", "url": "https://www.uniprot.org/uniprotkb/F1RUH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUH2-1", "url": "https://www.uniprot.org/uniprotkb/F1RUH2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAEPPSSLSYRTTGSTCLHPLSELLGIPLDQVNFVACQLFALFAAFWFRIYLSPGKTSPDVRHAFATIFGIYFVIFCFGWYSLHLFVLVLMCYGLMVTASVSNIHRYSFFVAMGYLTICHISRIYIFHYGILTTDFSGPLMIVTQKITTLAFQVHDGLGRRAEDLSTEQHRLAVKAKPSFLEYLSYLLNFMSVIAGPCNNFKDYVAFIEGRHTHMKLLEVNWKEKGFHSLPEPSPTGAVIHKLCMTLVSLLLFLTLTKTFPVTCLVDDWFVHKANFLTRLCYLYVVMQASKPKYYFAWTLADAVNNAAGFGFSGVDKNGNFSWDLLSNLNIWKIETATSFKMYLENWNIQTATWLKRVCYERVPWYPTVLTFILSALWHGVYPGYYFTFLTGILVTLAARTVRNNYRHYFLSSKALKVLYDIVTWAVTQLAVSYTVAPFVMLAVEPTISLYKSMYFYLHIISLLIILFLPIKPQAHTQRRPPTLNSKKKTD", "length": 492, "header": "tr|A0A481CBJ8-1|A0A481CBJ8_PIG Isoform 1 of Membrane bound O-acyltransferase domain containing 1 OS=Sus scrofa OX=9823 GN=MBOAT1 PE=4 SV=1 CANONICAL=A0A481CBJ8-1" }, "isoforms": [ { "isoform_ac": "A0A481CBJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CBJ8/entry#A0A481CBJ8-1", "sequence": { "sequence": "MAAEPPSSLSYRTTGSTCLHPLSELLGIPLDQVNFVACQLFALFAAFWFRIYLSPGKTSPDVRHAFATIFGIYFVIFCFGWYSLHLFVLVLMCYGLMVTASVSNIHRYSFFVAMGYLTICHISRIYIFHYGILTTDFSGPLMIVTQKITTLAFQVHDGLGRRAEDLSTEQHRLAVKAKPSFLEYLSYLLNFMSVIAGPCNNFKDYVAFIEGRHTHMKLLEVNWKEKGFHSLPEPSPTGAVIHKLCMTLVSLLLFLTLTKTFPVTCLVDDWFVHKANFLTRLCYLYVVMQASKPKYYFAWTLADAVNNAAGFGFSGVDKNGNFSWDLLSNLNIWKIETATSFKMYLENWNIQTATWLKRVCYERVPWYPTVLTFILSALWHGVYPGYYFTFLTGILVTLAARTVRNNYRHYFLSSKALKVLYDIVTWAVTQLAVSYTVAPFVMLAVEPTISLYKSMYFYLHIISLLIILFLPIKPQAHTQRRPPTLNSKKKTD", "length": 492, "header": "tr|A0A481CBJ8-1|A0A481CBJ8_PIG Isoform 1 of Membrane bound O-acyltransferase domain containing 1 OS=Sus scrofa OX=9823 GN=MBOAT1 PE=4 SV=1 CANONICAL=A0A481CBJ8-1" }, "locus": { "chromosome": "7", "start_pos": 15643488, "end_pos": 15534227, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069759.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069759.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066581.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066581.2" } ] } }, { "isoform_ac": "F1RUH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CBJ8/entry#F1RUH2-1", "sequence": { "sequence": "MYKGTLSSSTPTPKAVLPFVNFVACQLFALFAAFWFRIYLSPGKTSPDVRHAFATIFGIYFVIFCFGWYSLHLFVLVLMCYGLMVTASVSNIHRYSFFVAMGYLTICHISRIYIFHYGILTTDFSGPLMIVTQKITTLAFQVHDGLGRRAEDLSTEQHRLAVKAKPSFLEYLSYLLNFMSVIAGPCNNFKDYVAFIEGRHTHMKLLEVNWKEKGFHSLPEPSPTGAVIHKLCMTLVSLLLFLTLTKTFPVTCLVDDWFVHKANFLTRLCYLYVVMQASKPKYYFAWTLADAVNNAAGFGFSGVDKNGNFSWDLLSNLNIWKIETATSFKMYLENWNIQTATWLKRVCYERVPWYPTVLTFILSALWHGVYPGYYFTFLTGILVTLAARTVRNNYRHYFLSSKALKVLYDIVTWAVTQLAVSYTVAPFVMLAVEPTISLYKSMYFYLHIISLLIILFLPIKPQAHTQRRPPTLNSKKKTD", "length": 479, "header": "tr|F1RUH2-1|A0A481CBJ8_PIG Computationally mapped isoform of Membrane bound O-acyltransferase domain containing 1 OS=Sus scrofa OX=9823 GN=MBOAT1 PE=4 SV=5 CANONICAL=A0A481CBJ8-1" }, "locus": { "chromosome": "7", "start_pos": 15613987, "end_pos": 15534227, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001173.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001173.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001148.5", "url": "https://www.ensembl.org/id/ENSSSCP00000001148.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RUH2", "url": "https://www.uniprot.org/uniprotkb/F1RUH2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152017", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152017", "resource": "KEGG Pathway" }, { "id": "R-SSC-1482801", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482801", "resource": "Reactome", "description": "Acyl chain remodelling of PS" }, { "id": "R-SSC-1482839", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482839", "resource": "Reactome", "description": "Acyl chain remodelling of PE" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4IZC9-1", "protein_name": "Lysophospholipid acyltransferase 1", "gene_name": "mboat1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDKKKNIDIAFKTTGCTWLSPVSDQVGVPLDQVNFIACQLFGLAAAFWFRLFLSPQRATPEVRHAVAAILGASSVMFCFGWYAVHIFILVLACYGIMIKASVRNVHRYTMVASIGYLTACQVSRVFIFDYGILSTDFSGPLMMITQKITSLAFQVYDGMGRKQEELKDDQRQLAVHSKPSLLEYLSYNINFLSVLVGPCSNYKDYEEFIKGQHVQHRLKRVKDGSLQQNGWDKVPEPSPVRTVITKVLVCVCCLLWFFIITRAFPIKYNVDPQFITEASFISRLAYAFVSIQAARPKFYFAWTLADAVHNAAGYGVSGVNERGEVSWDLVSNVRIWEIETATSFKSFIDNWNIQTGLWLKRVCYDRAPFYRTPLTFVLSAIWHGVYPGYYFTFITAIPITLAARSVRRNFRKYFLSSRQLKACYDVVTWGATQLTICYTVMPFLLLALEPTLKYYRSMYFHVHVISILAMILLPGKPKSFKPENHDLHSNNNVKED", "length": 496 }, "evidence": [ { "id": "A0A481CBJ8", "url": "https://omabrowser.org/oma/group/A0A481CBJ8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E1BNI4-1", "protein_name": "Membrane bound O-acyltransferase domain containing 1", "gene_name": "MBOAT1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQDGSGAYRTTGSTCLHPLSELLGIPLDQVNFVACQLSALCAAFWFRLYLSPGETSPAVRHAFATIFGIYFVIFCFGWYSVHLFVLVLMCYGIMVTASISNIHRYSFFVAMGYLTICHISRIYIFHYGILTTDFSGPLMIVTQKITTLAFQVHDGLGRRAEDLSSEQHRLAVKAKPSFLEYVSYLLNFMSVIAGPCNNFKDYVAFIEGRHTHMKLLEVNWKEKGFHSLPEPSPTGAVMHKLCVTLVSLLLFLTLTKTFPVTSLVDDWFVHEANFLTRLCYLYIVMQASKPKYYFAWTLADAVNNAAGFGFSGVDKNGNFSWDLLSNLNIWKIETATSFKMYVENWNIQTATWLKRVCYERVPWYPTVLTFILSALWHGVYPGYYFTFLTGILVTLAARTVRKNYRHYFLSSKALKAVYDIVTWAVTQLAVSYTVAPFVMLAVEPTISLYKSMYFYLHIISLLIILFLPIKPQAHNQRWPQTLNSLNKKMD", "length": 490 }, "evidence": [ { "id": "A0A481CBJ8", "url": "https://omabrowser.org/oma/group/A0A481CBJ8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1LV18-1", "protein_name": "Membrane bound O-acyltransferase domain containing 1", "gene_name": "Mboat1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAARSPASLSYRTTGSTCLHPLSQLLGIPLDQVNFVACQLLALSAAFWFRIYLRPGKASPEVRHTLATILGIYFVVFCFGWYAVHLFVLVLMCYGVMVTASVSNIHRYSFFVAMGYLTICHISRIYIFHYGILTTDFSGPLMIVTQKITTLAFQVHDGLGRKAEDLSAEQHRLAVKVKPSLLEYLSYHLNFMSVIAGPCNNFKDYVAFIEGRHIHMKLLEVNWKERGFQSLPEPSPTGAVIQKLCITLMSLLLFLTLSKSFPVTFLIDDWFVHKANFLSRLWYLYVVMQAAKPKYYFAWTLADAVHNAAGFGFSGIDADGNSCWDLLSNLNIWKIETATSFKMYLENWNIQTSTWLKCVCYERVPWYPTVLTFLLSALWHGVYPGYYFTFLTGVPVTLAARAVRNNYRHHFLASKARKVAYDVVTWAVTQLAVSYTAAPFVMLAVEPTISLYKSMFFFLHILCLLIILLLPVKPRQPQRQSQSPNSVKKKAD", "length": 492 }, "evidence": [ { "id": "A0A481CBJ8", "url": "https://omabrowser.org/oma/group/A0A481CBJ8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3GWW5-1", "protein_name": "Lysophospholipid acyltransferase 1 isoform X1", "gene_name": "Mboat1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAARPPVSLSYRTTGSTCLHPLSQLLGIPLDQVNFVACQLFALSAAFWFRIYLHPGKASPEVRHALATILGIYFVVFCFGWYAVHLFVLVLMCYGVMVTASISNIHRYSFLVAMGYLTICHISRIYIFHYGILTTDFSGPLMIVTQKITTLAFQIHDGLGRKAEDLSAEQHRLAVKVKPSLLEYLSYHLNFMSIIAGPCNNFKDYAAFIEGRHIHMKLLEVNWKQRGFHSLPEPSPSAAVIQKLCMTLMSLLLFLTLSKSFPVTFLIDDWFVHKANFLSRLWYLYVVMQAAKPKYYFAWTLADAVHNAAGFGFSGVDADGHFCWDLLSNLNIWKIETATSFKMYLENWNIQTSAWLKCVCYERVPWYPTVFTFVLSALWHGVYPGYYFTFLTGVPVTLAARAVRNNYRHHFLSSKARKVAYDVVTWAATQLAISYTAAPFVLLAVEPTISLYKSMFFFLHIVSLLIIFFLPIKPRQPQRQPQSANSVKKKVD", "length": 492 }, "evidence": [ { "id": "A0A481CBJ8", "url": "https://omabrowser.org/oma/group/A0A481CBJ8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8BH98-1", "protein_name": "Membrane-bound glycerophospholipid O-acyltransferase 1", "gene_name": "Mboat1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAARPPASLSYRTTGSTCLHPLSQLLGIPLDQVNFVACQLFALSAAFWFRIYLHPGKASPEVRHTLATILGIYFVVFCFGWYAVHLFVLVLMCYGVMVTASVSNIHRYSFFVAMGYLTICHISRIYIFHYGILTTDFSGPLMIVTQKITTLAFQVHDGLGRKAEDLSAEQHRLAVKAKPSLLEYLSYHLNFMSVIAGPCNNFKDYVAFIEGRHIHMKLLEVNWTQRGFQSLPEPSPMGAVIQKLCVTLMSLLLFLTLSKSFPVTFLIDDWFVHKANFLSRLWYLYVVMQAAKPKYYFAWTLADAVHNAAGFGFNGMDTDGKSRWDLLSNLNIWKIETATSFKMYLENWNIQTSTWLKCVCYERVPWYPTVLTFLLSALWHGVYPGYYFTFLTGVPVTLAARAVRNNYRHHFLSSKARKIAYDVVTWAVTQLAVSYTAAPFVMLAVEPTISLYKSVFFFLHIICLLIILFLPIKPHQPQRQSRSPNSVKKKAD", "length": 492 }, "evidence": [ { "id": "A0A481CBJ8", "url": "https://omabrowser.org/oma/group/A0A481CBJ8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A481CBJ8", "url": "https://www.uniprot.org/uniprotkb/A0A481CBJ8" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A481CBJ8", "url": "https://www.uniprot.org/uniprotkb/A0A481CBJ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "phosphatidylserine acyl-chain remodeling", "id": "GO:0036150", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036150", "evidence": [ { "database": "UniProtKB", "id": "A0A481CBJ8", "url": "https://www.uniprot.org/uniprotkb/A0A481CBJ8" } ], "pmid": "" }, { "name": "lipid modification", "id": "GO:0030258", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030258", "evidence": [ { "database": "UniProtKB", "id": "A0A481CBJ8", "url": "https://www.uniprot.org/uniprotkb/A0A481CBJ8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "acyltransferase activity", "id": "GO:0016746", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016746", "evidence": [ { "database": "UniProtKB", "id": "A0A481CBJ8", "url": "https://www.uniprot.org/uniprotkb/A0A481CBJ8" } ], "pmid": "" }, { "name": "1-acylglycerophosphoserine O-acyltransferase activity", "id": "GO:0106263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106263", "evidence": [ { "database": "UniProtKB", "id": "A0A481CBJ8", "url": "https://www.uniprot.org/uniprotkb/A0A481CBJ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 321, "end_pos": 323, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 321, "end_pos": 323 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A481CKZ1-1", "uniprot_ac": "A0A481CKZ1", "uniprot_id": "A0A481CKZ1_PIG", "mass": { "chemical_mass": 101831.0, "monoisotopic_mass": 101831.0 }, "refseq": { "ac": "XP_020926739", "name": "periodic tryptophan protein 2 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926739" }, "gene_names": [ { "name": "PWP2", "type": "recommended", "evidence": [ { "id": "A0A481CKZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481CKZ1" } ] }, { "name": "PWP2", "type": "synonym", "evidence": [ { "id": "XP_020926739", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926739" } ] } ], "protein_names": [ { "name": "Periodic tryptophan protein 2 homolog", "type": "recommended", "evidence": [ { "id": "A0A481CKZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481CKZ1/entry#names_and_taxonomy" } ] }, { "name": "periodic tryptophan protein 2 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020926739", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926739" } ] } ], "function": [ { "annotation": "Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome.", "evidence": [ { "database": "UniProtKB", "id": "I3LBR8", "url": "https://www.uniprot.org/uniprotkb/I3LBR8#function" }, { "database": "UniProtKB", "id": "ARBA00035000", "url": "https://www.uniprot.org/uniprotkb/ARBA00035000#function" }, { "database": "UniProtKB", "id": "A0A481CKZ1", "url": "https://www.uniprot.org/uniprotkb/A0A481CKZ1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A481CKZ1", "url": "https://www.uniprot.org/uniprotkb/A0A481CKZ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PWP2", "url": "https://www.uniprot.org/uniprotkb/A0A481CKZ1", "locus": { "chromosome": "13", "start_pos": 207031879, "end_pos": 207015125, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000029627", "url": "https://www.ensembl.org/id/ENSSSCG00000029627" } ] } } ], "crossref": [ { "id": "ENSSSCG00000029627", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029627", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100623705", "url": "https://www.ncbi.nlm.nih.gov/gene/100623705", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007148", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007148", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027145", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027145", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "VYEWQSE", "url": "https://omabrowser.org/oma/group/VYEWQSE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR19858", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19858", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19858:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19858:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04003", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04003", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23381", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23381", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020926739", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926739", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A481CKZ1", "url": "https://www.uniprot.org/uniprotkb/A0A481CKZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481CKZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CKZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LBR8", "url": "https://www.uniprot.org/uniprotkb/I3LBR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LBR8-1", "url": "https://www.uniprot.org/uniprotkb/I3LBR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKFAYRFSNLLGTVYRCGNLNFTCDGNSLISPVGNRVTVFDLKNNKSDTLPLATRYNIKCVGLSPDGRLAIIVDEGGDALLVSLVCRSVLHHFHFKGAVHSVAFSPDGRKFVVTKGNGAQLYHAPGRRREFNAFVLDKTYFGPYDETTCIDWTDDSKCFVVGSKDMSTWVFGAERWDNLIYYALGGHRDAIVACFFEADSLDVYTLSQDGALCVWQCDTPPAGLRLKAPSGWRADLQRREGDEDEEDNEEEERAVRGKAAPAAEEQQGKVRYSRLAKYFFNKEGDFNNLTAAAYHKKVHLLVTGFASGMFHLHELPEFNLIHSLSISDQRVASVAINSSGDWIAFGCSGLGQLLVWEWQSESYVLKQQGHFNSMVSLAYSPDGQYIVTGGDDGKVKVWNTLSGFCFITFTEHSSGVTGVTFTATGYVIVTSSMDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDTSGEVVAAGAQDSFEIFIWSMQTGRLLDVLSGHEGPISGLCFNPTKSVLASASWDRTVRLWDMADSWRTTETLALTSDALAVTFRPDGAELAVATLNSQITFWDPENAVQTGSIEGRHDLKSGRKELDKITAKHSAKGKAFTALCYSADGQSVLAGGRSKFVCIYHVREQILRKRFEISGNLSLDAMEEFLNRRKMTEFGNLALIDQDAAEEAGVAIPLPGVKKGDMSSRHFKPEIRVTSLRFSPTGRCWAATTTEGLLIYSLDARMLFDPFELDTSVTPARVRAALRQRDFTRAILMAFRLNERKLLQEALESVPWDEVEVVSSSLPDLYVEKVLEFLASSLEVSHHLEFYLVWAQKLLMAHGQKLKARAGTLLPAVQFLQKSIQRHFDGLSKLCDWNRYSLRFALAVSQQRGLKRASEAPGSEEEADGSDEDDESLHLLGAGPGDADGLRP", "length": 918, "header": "tr|A0A481CKZ1-1|A0A481CKZ1_PIG Isoform 1 of Periodic tryptophan protein 2 homolog OS=Sus scrofa OX=9823 GN=PWP2 PE=3 SV=1 CANONICAL=A0A481CKZ1-1" }, "isoforms": [ { "isoform_ac": "A0A481CKZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CKZ1/entry#A0A481CKZ1-1", "sequence": { "sequence": "MKFAYRFSNLLGTVYRCGNLNFTCDGNSLISPVGNRVTVFDLKNNKSDTLPLATRYNIKCVGLSPDGRLAIIVDEGGDALLVSLVCRSVLHHFHFKGAVHSVAFSPDGRKFVVTKGNGAQLYHAPGRRREFNAFVLDKTYFGPYDETTCIDWTDDSKCFVVGSKDMSTWVFGAERWDNLIYYALGGHRDAIVACFFEADSLDVYTLSQDGALCVWQCDTPPAGLRLKAPSGWRADLQRREGDEDEEDNEEEERAVRGKAAPAAEEQQGKVRYSRLAKYFFNKEGDFNNLTAAAYHKKVHLLVTGFASGMFHLHELPEFNLIHSLSISDQRVASVAINSSGDWIAFGCSGLGQLLVWEWQSESYVLKQQGHFNSMVSLAYSPDGQYIVTGGDDGKVKVWNTLSGFCFITFTEHSSGVTGVTFTATGYVIVTSSMDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDTSGEVVAAGAQDSFEIFIWSMQTGRLLDVLSGHEGPISGLCFNPTKSVLASASWDRTVRLWDMADSWRTTETLALTSDALAVTFRPDGAELAVATLNSQITFWDPENAVQTGSIEGRHDLKSGRKELDKITAKHSAKGKAFTALCYSADGQSVLAGGRSKFVCIYHVREQILRKRFEISGNLSLDAMEEFLNRRKMTEFGNLALIDQDAAEEAGVAIPLPGVKKGDMSSRHFKPEIRVTSLRFSPTGRCWAATTTEGLLIYSLDARMLFDPFELDTSVTPARVRAALRQRDFTRAILMAFRLNERKLLQEALESVPWDEVEVVSSSLPDLYVEKVLEFLASSLEVSHHLEFYLVWAQKLLMAHGQKLKARAGTLLPAVQFLQKSIQRHFDGLSKLCDWNRYSLRFALAVSQQRGLKRASEAPGSEEEADGSDEDDESLHLLGAGPGDADGLRP", "length": 918, "header": "tr|A0A481CKZ1-1|A0A481CKZ1_PIG Isoform 1 of Periodic tryptophan protein 2 homolog OS=Sus scrofa OX=9823 GN=PWP2 PE=3 SV=1 CANONICAL=A0A481CKZ1-1" }, "locus": { "chromosome": "13", "start_pos": 207029285, "end_pos": 207015171, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074987.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074987.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073955.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073955.2" } ] } }, { "isoform_ac": "I3LBR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CKZ1/entry#I3LBR8-1", "sequence": { "sequence": "MKFAYRFSNLLGTVYRCGNLNFTCDGNSLISPVGNRVTVFDLKNNKSDTLPLATRYNIKCVGLSPDGRLAIIVDEGGDALLVSLVCRSVLHHFHFKGAVHSVAFSPDGRKFVVTKGNGAQLYHAPGRRREFNAFVLDKTYFGPYDETTCIDWTDDSKCFVVGSKDMSTWVFGAERWDNLIYYALGGHRDAIVACFFEADSLDVYTLSQDGALCVWQCDTPPAGLRLKAPSGWRADLQRREGDEDEEDNEEEERAVRGKAAPAAEEQQGKVRYSRLAKYFFNKEGDFNNLTAAAYHKKVHLLVTGFASGMFHLHELPEFNLIHSLSISDQRVASVAINSSGDWIAFGCSGLGQLLVWEWQSESYVLKQQGHFNSMVSLAYSPDGQYIVTGGDDGKVKVWNTLSGFCFITFTEHSSGVTGVTFTATGYVIVTSSMDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDTSGEVVAAGAQDSFEIFIWSMQTGRLLDVLSGHEGPISGLCFNPTKSVLASASWDRTVRLWDMADSWRTTETLALTSDALAVTFRPDGAELAVATLNSQITFWDPENAVQTGSIEGRHDLKSGRKELDKITAKHSAKGKAFTALCYSADGQSVLAGGRSKFVCIYHVREQILRKRFEISGNLSLDAMEEFLNRRKMTEFGNLALIDQDAAEEAGVAIPLPGVKKGDMSSRHFKPEIRVTSLRFSPTGRCWAATTTEGLLIYSLDARMLFDPFELDTSVTPARVRAALRQRDFTRAILMAFRLNERKLLQEALESVPWDEVEVVSSSLPDLYVEKVLEFLASSLEVSHHLEFYLVWAQKLLMAHGQKLKARCDWNRYSLRFALAVSQQRGLKRASEAPGSEEEADGSDEDDESLHLLGAGPGDADGLRP", "length": 893, "header": "tr|I3LBR8-1|A0A481CKZ1_PIG Computationally mapped isoform of Periodic tryptophan protein 2 homolog OS=Sus scrofa OX=9823 GN=PWP2 PE=3 SV=3 CANONICAL=A0A481CKZ1-1" }, "locus": { "chromosome": "13", "start_pos": 207029285, "end_pos": 207015171, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028839.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028839.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021489.3", "url": "https://www.ensembl.org/id/ENSSSCP00000021489.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LBR8", "url": "https://www.uniprot.org/uniprotkb/I3LBR8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QLU6-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "Pwp2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKFAYRFSNLLGTVYRCGNLNFTQDGNSVISPVGNRVTVFDLKNNRSDTLPLATKYNIKCVGLSPDGRLAIIVDEGGEALLVSLVCRSVLHHFHFKGSVHSVSFSPDGRKFVVTKGNIAQMYHAPGKKREFNAFVLDKTYFGPYDETTCIDWTDDSKCFVVGSKDMSTWVFGAERWDNLIYYALGGHKDAIVACFFESNSLDLYSLSQDGALCVWQCDTPPEGLKLKPPKGWKADLLQREKEEEEEEEGEDEEEGDRETTIRGKTMPAEQEKAGKVKYSRLAKYFLNKEGDFNNLTAAAYHKKTHLLVTGFASGIFHLHELPEFNLIHSLSISDQRVASVAINSSGDWIAFGCSGLGQLLVWEWQSESYILKQQGHFNSMVSLAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTFTEHSSGVTGVTFTTTGHVIVTSSLDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDSSGEIVSAGAQDSFEIFVWSMQTGRLLDVLSGHEGPISGLCFNPMKSILASASWDKTVRLWDMFDSWRTKETLTLTSDALAVTFRPDGAELAVATLNSQITFWDPENAVQMGSIEGRHDLKTGRKELDKITAKHSAKGKAFTTLCYSADGQNILAGGMSKFVCLYHVREQILVKRFELSCNLSLDAMEEFLNRRKMTEFGNLALIDQDAGEENGVAVPLPGVRKGDMSSRHFKPEIRVTSLRFSPTGRCWAATSTEGLLIFSLDAQMLFDPFELDTSVTPGRIREALRQREFTRAILMAFRLNEKKLAQEVLEAVPQDEIDVVSASLPELYVEKVLEFLAASFEVSRHLEFYLIWTQKLLMSHGQRLKPRAGQLLPVVQFLQKGLQRHLDDVSKLCDWNRYNIQYALAVSKQRGVKRTLEPVDTEEDTDASDDDSLHLLRGAADDEEEEEGMLV", "length": 925 }, "evidence": [ { "id": "A0A481CKZ1", "url": "https://omabrowser.org/oma/group/A0A481CKZ1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZV54-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "Pwp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKFAYRFSNLLGTVYRCGNLNFSRDGNSVISPVGNRVTVFDLKNNRSDTLPLATKYNIKCVGLSPDGRLAIIVDEGGAALLVSLVCRSVLHHFHFKGSVHSVSFSPDGRKFVITKGNIAQMYHAPGKKREFNAFVLDKTYFGPYDETTCIDWTDDSKCFVVGSKDMSTWVFGAERWDNLIYYALSGHKDAIVACFFESNSLDLYSLSQDGALCVWQCDTPPEGLRLKAPRGWKADILQREKEEEEEEDEEGEGNRETTIRGKAVPAEQERVGKVKYSRLAKYFLNKEGDFNNLTAAAYHKKTHLLVTGFASGIFHLHELPEFNLIHSLSISDQRVASVAINSSGDWIAFGCSGLGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTLTEHSSGVTGVTFTATGHVIVTSSLDGTVRAYDLHRYRNFRTFTSPRPTQFSCVAVDSSGEIVSAGAQDSFEIFVWSMQTGRLLDVLSGHEGPISGLCFNPMKSILASASWDKTVRLWDMFDSWRTKETLSLTSDVLAVTYRPDGAELAVATLNSQITFWDPENAVQVGSIEGRHDLKTGRKELDKITAKHSAKGKAFTTVCYSADGQNILAGGMSKFVCLYHVREQILVKRFELSCNFSLDAMEEFLNRRKMTEFGNLALIDQDAGEENGVAIPLPGVRKGDMSSRHFKPEIRVTSLRFSPTGRCWAATSTEGLLIFSLDAQMLFDPFELDTSVTPGRIREALRQREFTRAILMAFRLNEKKLAQEALEAVPQNEIEVVSASLPELYVVKVLEFLAASFEESRHLEFYLIWTQKLLMSHGQRLKSRAGQLLPVVQFLQKGLQRHLDDISKLCDWNRYNIQYALAVSKQRGMKRTLEPVDTEEDTDASDEDSLHLLRAAEEEEEGMLV", "length": 920 }, "evidence": [ { "id": "A0A481CKZ1", "url": "https://omabrowser.org/oma/group/A0A481CKZ1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BL00-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALPPRKCLLRAEGRGAETASNTRVAAGMKFAYRFSNLLGTVYRCGNLNFTCDGNSVISPVGNRVTVFDLKNNKSNTLPLATRYNIKCVGLSPDGRLAIIVDEGGDALLVSLVCRSVLHHFHFKGAVHSVSFSPDGRKFVVTKGNIAQVYHAPGRKREFNAFVLDKTYFGPYDETTCIDWTDDSRCFAVGSRDMSTWVFGAERWDNLIYYALGGHKDAIVACFFEASSLDLYTLSQDGALCVWQCDTLPEGLRLKAPTGWKADLLQREEEQEEEEGAESETTIRGKATPAAEEQQGKVKYSRVAKYFFNKEGDFNNLTAAAYHKKVHLLVTGFASGIFHLHELPEFNLIHSLSISDQRVASVAINSSGDWIAFGCSGLGQLLVWEWQSESYVLKQQGHFNSMVSLAYSPDGQYIVTGGDDGKVKVWNSLSGFCFVTFTEHSSGVTGVTFTTTGYVIVTSSMDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDSSGEIVSAGAQDSFEVFIWSMQTGRLLDVLSGHEGPISGLCFNPMKSVLASASWDRTVHLWDMADSWRTTETLALTSDALAVTFRPDGAELAVATLNSQITFWDPENAVQTGSIEGRHDLKTGRKELDKITAKHSAKGKAFTTLCYSADGQSILAGGMSKFVCIYHVREQILRKKFEISCNLSLDAMEEFLNRRKMTEFGNLALIDQDAAEEGGVAIPLPSVKKGDMSSRHFKPEIRVTSLRFSPTGRCWAATTTEGLLIYSLDAQMLFDPFELDTSVTPVRIRAALRQRDFTRAILLAFRLNERKLLQETLEAVPWDEIEVISSSLPDLYVEKVLEFLASSFEVSHHLEFYLIWTQKLLMVHGQKLKSRVGTLLPAVQFLQKSIQRHLDDVSKLCDWNRYNLQYALAVSKQRGLKRPSEPLGSEEEAGASEDDDDDSLHLLGGGPGHADAPLA", "length": 948 }, "evidence": [ { "id": "A0A481CKZ1", "url": "https://omabrowser.org/oma/group/A0A481CKZ1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P25635-1", "protein_name": "Periodic tryptophan protein 2", "gene_name": "PWP2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MKSDFKFSNLLGTVYRQGNITFSDDGKQLLSPVGNRVSVFDLINNKSFTFEYEHRKNIAAIDLNKQGTLLISIDEDGRAILVNFKARNVLHHFNFKEKCSAVKFSPDGRLFALASGRFLQIWKTPDVNKDRQFAPFVRHRVHAGHFQDITSLTWSQDSRFILTTSKDLSAKIWSVDSEEKNLAATTFNGHRDYVMGAFFSHDQEKIYTVSKDGAVFVWEFTKRPSDDDDNESEDDDKQEEVDISKYSWRITKKHFFYANQAKVKCVTFHPATRLLAVGFTSGEFRLYDLPDFTLIQQLSMGQNPVNTVSVNQTGEWLAFGSSKLGQLLVYEWQSESYILKQQGHFDSTNSLAYSPDGSRVVTASEDGKIKVWDITSGFCLATFEEHTSSVTAVQFAKRGQVMFSSSLDGTVRAWDLIRYRNFRTFTGTERIQFNCLAVDPSGEVVCAGSLDNFDIHVWSVQTGQLLDALSGHEGPVSCLSFSQENSVLASASWDKTIRIWSIFGRSQQVEPIEVYSDVLALSMRPDGKEVAVSTLKGQISIFNIEDAKQVGNIDCRKDIISGRFNQDRFTAKNSERSKFFTTIHYSFDGMAIVAGGNNNSICLYDVPNEVLLKRFIVSRNMALNGTLEFLNSKKMTEAGSLDLIDDAGENSDLEDRIDNSLPGSQRGGDLSTRKMRPEVRVTSVQFSPTANAFAAASTEGLLIYSTNDTILFDPFDLDVDVTPHSTVEALREKQFLNALVMAFRLNEEYLINKVYEAIPIKEIPLVASNIPAIYLPRILKFIGDFAIESQHIEFNLIWIKALLSASGGYINEHKYLFSTAMRSIQRFIVRVAKEVVNTTTDNKYTYRFLVSTDGSMEDGAADDDEVLLKDDADEDNEENEENDVVMESDDEEGWIGFNGKDNKLPLSNENDSSDEEENEKELP", "length": 923 }, "evidence": [ { "id": "A0A481CKZ1", "url": "https://omabrowser.org/oma/group/A0A481CKZ1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFAYRFSNLLGTVYRRGNLNFTCDGNSVISPVGNRVTVFDLKNNKSDTLPLATRYNVKCVGLSPDGRLAIIVDEGGDALLVSLVCRSVLHHFHFKGSVHSVSFSPDGRKFVVTKGNIAQMYHAPGKKREFNAFVLDKTYFGPYDETTCIDWTDDSRCFVVGSKDMSTWVFGAERWDNLIYYALGGHKDAIVACFFESNSLDLYSLSQDGVLCMWQCDTPPEGLRLKPPAGWKADLLQREEEEEEEEDQEGDRETTIRGKATPAEEEKTGKVKYSRLAKYFFNKEGDFNNLTAAAFHKKSHLLVTGFASGIFHLHELPEFNLIHSLSISDQSIASVAINSSGDWIAFGCSGLGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTFTEHSSGVTGVTFTATGYVVVTSSMDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDASGEIVSAGAQDSFEIFVWSMQTGRLLDVLSGHEGPISGLCFNPMKSVLASASWDKTVRLWDMFDSWRTKETLALTSDALAVTFRPDGAELAVATLNSQITFWDPENAVQTGSIEGRHDLKTGRKELDKITAKHAAKGKAFTALCYSADGHSILAGGMSKFVCIYHVREQILMKRFEISCNLSLDAMEEFLNRRKMTEFGNLALIDQDAGQEDGVAIPLPGVRKGDMSSRHFKPEIRVTSLRFSPTGRCWAATTTEGLLIYSLDTRVLFDPFELDTSVTPGRVREALRQQDFTRAILMALRLNESKLVQEALEAVPRGEIEVVTSSLPELYVEKVLEFLASSFEVSRHLEFYLLWTHKLLMLHGQKLKSRAGTLLPVIQFLQKSIQRHLDDLSKLCSWNHYNMQYALAVSKQRGTKRSLDPLGSEEEAEASEDDSLHLLGGGGRDSEEEMLA", "length": 919 }, "evidence": [ { "id": "A0A481CKZ1", "url": "https://omabrowser.org/oma/group/A0A481CKZ1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54PE0-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "pwp2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKFGYKFSNLLGTVYNKGNILFTPDGNTVISPVGNRLTVFDLVNHTSITLPIQSKYNIRRLALSPNGQILITSDESGHTLIINLTRQVVLGEYKFFKTPKSILFSPNGAIIAIAVLEKVFLFKTPIIQKQPNPLIRLSVFTHKSAVISMCWSADSLKLMIGCKNGTLLIRQGKSERVSYFQVKGSGIINCFFGNEESTIAYAVTPTGLASWDYKTNEEMEQEKLERVENGETAYLREEEMDEEKLKVITENQRLYKGRWIFKGFKKFENYGVKCKVKTVCFHLKSKLLLVGFSTGQFILYEMPGFNQLYKLNISSHGISTSAINNTGEWLAFGCSELGQLLVWEWRSETYILKQQGHSYNMNTVAYSPDGQTIATGGEDGKVKIWNTTSGYCYITFTEHEGPVTAVKYSPVSSQNVVFSAGVDGTIRAFDLVRYRNFRTFVSPNKTQFSCLAVDPSGEIIAAGSLDSFEIYVWSVRTGRLTDILSGHQSPVCELAFDPINPFLASASWDKSCKIWNIFEDREIRESIQHTSDVLTCAYSQDGKKFIVSCLDGTIQIYETSTWGQIGLIDGKNDIMGGRGYKDEILAKNNSAGRAFTKIAFTPNGECIIAGGNSKYICIYHIDQQVLIKKYSTSSNLSLDGITLDINWKRVGEFGHLDAMEKDFDSDDDLYQQNKEYLTGSSKGDLSKRTTKKKQKTTSISVSPTGRAWAVSTTEGLLIYSLDDFLFFDPTDLSIDINPDSILSELNLKNYLKSLIMSIKLNEKPIIEKVFESIPFNEIQLVCQEFPIYYLKNFIQFLSGYFEKNHHLEFQMKWVKLISIYHGKYIKTNSLSMITSLRNLQKTITQTYNDISKVCDDNIFSMEYFKTVLLKELKSQEETNKISKKSQKYKKYLESKKNKEQEEDQFSDDEETVYQNNKKNKNK", "length": 922 }, "evidence": [ { "id": "A0A481CKZ1", "url": "https://omabrowser.org/oma/group/A0A481CKZ1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BU03-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "Pwp2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKFAYRFSNLLGTVYRCGNLNFTHDGNSVISPVGNRVTVFDLKNNRSNTLPLATKYNIKCVGLSPDGRLAIIVDEGGAALLVSLVCRSVLHHFHFKGSVHSVSFSPDGRKFVVTKGNIAQMYHAPGKKREFNAFVLDKTYFGPYDETTCIDWTDDSKCFVVGSKDMSTWVFGAERWDNLIYYALSGHKDAIVACFFESNSLDLYSLSQDGALCVWQCDTPPEGLRLKAPRGWKADILQREKEEEEEDEEEGDRETTIRGKTTPAEQERVGKVKYSRLAKYFLNKEGDFNNLTSAAYHKKTHLLVTGFASGIFHLHELPEFNLIHSLSISDQRVASVAINSSGDWIAFGCSGMGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGFCFVTLTEHSSGVTGVTFTTTGHVIVTSSLDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDSSGEIVSAGAQDSFEIFVWSMQTGRLLDVLSGHEGPVSGLCFNPMKSILASASWDKTVRLWDMFDSWRTKETLTLTSDALAVTFRPDGAELAVATLNSQITFWDPENAVQVGSIEGRHDLKTGRKELDKITAKHSAKGKAFTTLCYSADGQSILAGGMSKFVCLYHVREQILVKRFELSCNLSLDAMEEFLNRRKMTEFGNLALIDQDAGEENGVAVPLPGVRKGDMSSRHFKPEIRVTSLRFSPTGRCWAATSTEGLLIFSLDAQMLFDPFELDTSVTPGRIREALRQREFTRAILMAFRLNEKKLAQEALEAVPQNEIEVVSTSLPELYVVKVLEFLAASFEESRHLEFYLIWTQKLLMSHGQRLKSRAGQLLPVVQFLQKGLQRHLDDVSKLCDWNRFNIQYVLAVSKQRGMKRTLEPVDTEEDSDASDEDSLHLLRAAGEEEEEEMLI", "length": 919 }, "evidence": [ { "id": "A0A481CKZ1", "url": "https://omabrowser.org/oma/group/A0A481CKZ1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VYZ5-1", "protein_name": "Periodic tryptophan protein 2", "gene_name": "PWP2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEFRFENLLGAPYRGGNAVITKNTQLISPVGNRVSVTDLSKNHSVTLPLETSTNICRLASSPDGTFLLAVDEQNRCLFINLPRRVVLHRITFKDKVGALKFSPNGKFIAVGIGKLVEIWRSPGFRRAVLPFERVRTFANSDDKVVSLEWSLDSDYLLVGSRDLAARLFCVRKLKGVLNKPFLFLGHRDSVVGCFFGVDKMTNKVNRAFTIARDGYIFSWGYTEKDVKMDESEDGHSEPPSPVTPDRADEVMVENGGGVGTELKKRKEYDGKGLESDEEGDDDDEEYMHRGKWVLLRKDGCNQASAKVTACDYHQGLDMVVVGFSNGVFGLYQMPDFICIHLLSISRQKLTTAVFNERGNWLTFGCAKLGQLLVWDWRTETYILKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDGTVRAWDFKRYKNYKTYTTPTPRQFVSLTADPSGDVVCAGTLDSFEIFVWSKKTGQIKDILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWDVFASKGTVETFRHNHDVLTVAFRPDGKQLASSTLDGQINFWDTIEGVLMYTIEGRRDIAGGRVMTDRRSAANSSSGKCFTTLCYSADGGYILAAGTSRYICMYDIADQVLLRRFQISHNLSLDGVLDFLHSKKMTEAGPIDLIDDDNSDEEGGIDKQSRGNLGYDLPGSRPNRGRPIIRTKSLSIAPTGRSFAAATTEGVLIFSIDDTFIFDPTDLDIDVTPEAVEAAIEEDEVSRALALSMRLNEDSLIKKCIFAVAPADIKAVAISVRQKYLERLMEALVDLLENCPHLEFILHWCQEICKAHGSSIQRNYRTLLPALRSLQKAITRAHQDLADMCSSNEYTLRYLCSVPNNH", "length": 900 }, "evidence": [ { "id": "A0A481CKZ1", "url": "https://omabrowser.org/oma/group/A0A481CKZ1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Pwp2p-containing subcomplex of 90S preribosome", "id": "GO:0034388", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034388", "evidence": [ { "database": "UniProtKB", "id": "A0A481CKZ1", "url": "https://www.uniprot.org/uniprotkb/A0A481CKZ1" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "A0A481CKZ1", "url": "https://www.uniprot.org/uniprotkb/A0A481CKZ1" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A481CKZ1", "url": "https://www.uniprot.org/uniprotkb/A0A481CKZ1" } ], "pmid": "" } ] }, { "name": 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1 of GLIS family zinc finger 3 OS=Sus scrofa OX=9823 GN=GLIS3 PE=3 SV=1 CANONICAL=A0A481CRY1-1" }, "locus": { "chromosome": "1", "start_pos": 218113224, "end_pos": 217643687, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005757.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005757.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005615.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005615.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 456, "start_aa": "Thr", "end_pos": 456, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr456", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A481CRY1", "url": "https://www.uniprot.org/uniprotkb/A0A481CRY1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523225", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523225", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A481CRY1", "url": "https://www.uniprot.org/uniprotkb/A0A481CRY1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A481CRY1", "url": "https://www.uniprot.org/uniprotkb/A0A481CRY1" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A481CRY1", "url": "https://www.uniprot.org/uniprotkb/A0A481CRY1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A481CRY1", "url": "https://www.uniprot.org/uniprotkb/A0A481CRY1" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A481CRY1", "url": "https://www.uniprot.org/uniprotkb/A0A481CRY1" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A481CRY1", "url": "https://www.uniprot.org/uniprotkb/A0A481CRY1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], 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"Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 502, "end_pos": 532, "start_aa": "His", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 456 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 240, "end_pos": 242 }, { "start_pos": 333, "end_pos": 335 }, { "start_pos": 341, "end_pos": 343 }, { "start_pos": 612, "end_pos": 614 }, { "start_pos": 717, "end_pos": 719 }, { "start_pos": 75, "end_pos": 77 }, { "start_pos": 851, "end_pos": 853 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A481CVU6-1", "uniprot_ac": "A0A481CVU6", "uniprot_id": "A0A481CVU6_PIG", "mass": { "chemical_mass": 92636.0, "monoisotopic_mass": 92636.0 }, "refseq": { "ac": "XP_020943431", "name": "protein EFR3 homolog B isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943431" }, "gene_names": [ { "name": "EFR3B", "type": "recommended", "evidence": [ { "id": "A0A481CVU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481CVU6" } ] }, { "name": "EFR3B", "type": "synonym", "evidence": [ { "id": "XP_020943431", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943431" } ] } ], "protein_names": [ { "name": "Protein EFR3 homolog B", "type": "recommended", "evidence": [ { "id": "A0A481CVU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481CVU6/entry#names_and_taxonomy" } ] }, { "name": "protein EFR3 homolog B isoform X4", "type": "synonym", "evidence": [ { "id": "XP_020943431", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943431" } ] } ], "function": [ { "annotation": "Component of a complex required to localize phosphatidylinositol 4-kinase (PI4K) to the plasma membrane. The complex acts as a regulator of phosphatidylinositol 4-phosphate (PtdIns(4)P) synthesis. In the complex, EFR3B probably acts as the membrane-anchoring component. Also involved in responsiveness to G-protein-coupled receptors; it is however unclear whether this role is direct or indirect.", "evidence": [ { "database": "UniProtKB", "id": "A0A481CVU6", "url": "https://www.uniprot.org/uniprotkb/A0A481CVU6#function" }, { "database": "UniProtKB", "id": "ARBA00060067", "url": "https://www.uniprot.org/uniprotkb/ARBA00060067#function" }, { "database": "UniProtKB", "id": "I3LFY5", "url": "https://www.uniprot.org/uniprotkb/I3LFY5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A481CVU6", "url": "https://www.uniprot.org/uniprotkb/A0A481CVU6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EFR3B", "url": "https://www.uniprot.org/uniprotkb/A0A481CVU6", "locus": { "chromosome": "3", "start_pos": 113670755, "end_pos": 113758876, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022933", "url": "https://www.ensembl.org/id/ENSSSCG00000022933" } ] } } ], "crossref": [ { "id": "ENSSSCG00000022933", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022933", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100621843", "url": "https://www.ncbi.nlm.nih.gov/gene/100621843", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051851", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051851", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "VGTKYQT", "url": "https://omabrowser.org/oma/group/VGTKYQT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12444", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12444", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12444:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12444:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21052", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21052", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020943431", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943431", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A481CVU6", "url": "https://www.uniprot.org/uniprotkb/A0A481CVU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481CVU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CVU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LFY5", "url": "https://www.uniprot.org/uniprotkb/I3LFY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LFY5-1", "url": "https://www.uniprot.org/uniprotkb/I3LFY5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYGVCGCCGALRPRYKRLVDNIFPEDPEDGLVKTNMEKLTFYALSAPEKLDRIGAYLSERLIRDVGRHRYGYVCIAMEALDQLLMACHCQSINLFVESFLKMVAKLLESEKPNLQILGTNSFVKFANIEEDTPSYHRSYDFFVSRFSEMCHSSHEDLEIKTKIRMSGIKGLQGVVRKTVNDELQANIWDPQHMDKIVPSLLFNLQHVEEAESRSPSPLQAPEKEKENPAELAERCLRELLGRAAFGNIKNAIKPVLIHLDNHSLWEPKVFAIRCFKIIMYSIQPQHSHLVIQQLLSHLDANSRSAATVRAGIVEVLSEAAVIAATGSVGPTVLEMFNTLLRQLRLSIDYALTGSYDGAISLGTKIIKEHEERMFQEAVIKTIGSFASTLPTYQRSEVILFIMSKVPLPSLHHPMETGRTGENRNRLTQIMLLKSLLQVSTGFQCNNMMSALPSNFLDRLLSTVLMEDAEIRLFVLEILISFIDRHGNRHKFSTISTLSDISVLKLKVDKCSRQDTIFMKKHSQQLYRHIYLSCKEETNIQKHYEALYGLLALISIELANEEVVVDLIRLVLAVQDVAQVNEENLPVYNRCALYALGAAYLNLISQLTTVPAFCQHIHEVIETRKKEAPYMLPEDVFVERPRLSQNLDGVVIELLFRQSKISEVLGGSGYNADRLCLPYIPQLTDEDRLSKRKSIGETISLQVEVESRNSPEKEERVPAEEITYETLKKAIVDSVAVEEQERERRRQVVEKFQKAPFEEIAAHCGARASLLQSKLNQIFEITIRPPPSPSGTITAAYGQPQNHSIPVYEMKFPDLCVY", "length": 817, "header": "tr|A0A481CVU6-1|A0A481CVU6_PIG Isoform 1 of Protein EFR3 homolog B OS=Sus scrofa OX=9823 GN=EFR3B PE=3 SV=1 CANONICAL=A0A481CVU6-1" }, "isoforms": [ { "isoform_ac": "A0A481CVU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CVU6/entry#A0A481CVU6-1", "sequence": { "sequence": "MYGVCGCCGALRPRYKRLVDNIFPEDPEDGLVKTNMEKLTFYALSAPEKLDRIGAYLSERLIRDVGRHRYGYVCIAMEALDQLLMACHCQSINLFVESFLKMVAKLLESEKPNLQILGTNSFVKFANIEEDTPSYHRSYDFFVSRFSEMCHSSHEDLEIKTKIRMSGIKGLQGVVRKTVNDELQANIWDPQHMDKIVPSLLFNLQHVEEAESRSPSPLQAPEKEKENPAELAERCLRELLGRAAFGNIKNAIKPVLIHLDNHSLWEPKVFAIRCFKIIMYSIQPQHSHLVIQQLLSHLDANSRSAATVRAGIVEVLSEAAVIAATGSVGPTVLEMFNTLLRQLRLSIDYALTGSYDGAISLGTKIIKEHEERMFQEAVIKTIGSFASTLPTYQRSEVILFIMSKVPLPSLHHPMETGRTGENRNRLTQIMLLKSLLQVSTGFQCNNMMSALPSNFLDRLLSTVLMEDAEIRLFVLEILISFIDRHGNRHKFSTISTLSDISVLKLKVDKCSRQDTIFMKKHSQQLYRHIYLSCKEETNIQKHYEALYGLLALISIELANEEVVVDLIRLVLAVQDVAQVNEENLPVYNRCALYALGAAYLNLISQLTTVPAFCQHIHEVIETRKKEAPYMLPEDVFVERPRLSQNLDGVVIELLFRQSKISEVLGGSGYNADRLCLPYIPQLTDEDRLSKRKSIGETISLQVEVESRNSPEKEERVPAEEITYETLKKAIVDSVAVEEQERERRRQVVEKFQKAPFEEIAAHCGARASLLQSKLNQIFEITIRPPPSPSGTITAAYGQPQNHSIPVYEMKFPDLCVY", "length": 817, "header": "tr|A0A481CVU6-1|A0A481CVU6_PIG Isoform 1 of Protein EFR3 homolog B OS=Sus scrofa OX=9823 GN=EFR3B PE=3 SV=1 CANONICAL=A0A481CVU6-1" }, "locus": { "chromosome": "3", "start_pos": 113758732, "end_pos": 113675056, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070587.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070587.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073106.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073106.1" } ] } }, { "isoform_ac": "I3LFY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CVU6/entry#I3LFY5-1", "sequence": { "sequence": "MYGVCGCCGALRPRYKRLVDNIFPEDPEDGLVKTNMEKLTFYALSAPEKLDRIGAYLSERLIRDVGRHRYGYVCIAMEALDQLLMACHCQSINLFVESFLKMVAKLLESEKPNLQILGTNSFVKFANIEEDTPSYHRSYDFFVSRFSEMCHSSHEDLEIKTKIRMSGIKGLQGVVRKTVNDELQANIWDPQHMDKIVPSLLFNLQHVEEAESRSPSPLQAPEKEKENPAELAERCLRELLGRAAFGNIKNAIKPVLIHLDNHSLWEPKVFAIRCFKIIMYSIQLLSHLDANSRSAATVRAGIVEVLSEAAVIAATGSVGPTVLEMFNTLLRQLRLSIDYALTGSYDGAISLGTKIIKEHEERMFQEAVIKTIGSFASTLPTYQRSEVILFIMSKVPLPSLHHPMETGRTGENRNRLTQIMLLKSLLQVSTGFQCNNMMSALPSNFLDRLLSTVLMEDAEIRLFVLEILISFIDRHGNRHKFSTISTLSDISVLKLKVDKCSRQDTIFMKKHSQQLYRHIYLSCKEETNIQKHYEALYGLLALISIELANEEVVVDLIRLVLAVQDVAQVNEENLPVYNRCALYALGAAYLNLISQLTTVPAFCQHIHEVIETRKKEAPYMLPEDVFVERPRLSQNLDGVVIELLFRQSKISEVLGGSGYNADRLCLPYIPQLTDEDRLSKRKSIGETISLQVEVESRNSPEKEERVPAEEITYETLKKAIVDSVAVEEQERERRRQVVEKFQKAPFEEIAAHCGARASLLQSKLNQIFEITIRPPPSPSGTITAAYGQPQNHSIPVYEMKFPDLCVY", "length": 807, "header": "tr|I3LFY5-1|A0A481CVU6_PIG Computationally mapped isoform of Protein EFR3 homolog B OS=Sus scrofa OX=9823 GN=EFR3B PE=3 SV=3 CANONICAL=A0A481CVU6-1" }, "locus": { "chromosome": "3", "start_pos": 113758732, "end_pos": 113675056, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025548.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025548.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022978.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022978.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 331, "start_aa": "Thr", "end_pos": 331, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr331", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LFY5", "url": "https://www.uniprot.org/uniprotkb/I3LFY5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q54GC3-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAFGKTKKYKRIVKTIFPQVEGGEMQLGNISKLVYFCEMSPEQLQKVGPYIEAKAQKNLSKKRLVYVSTCIIIIRELIIGCRKHLALFSGNATRLMKILLIQTEYPSLQIEATETFIRFASVQDDSNQIPPEIDEFIKYFIIMAKNMDNDDTMRRTIRGEGLRGVTAYVSLASLTDDLDTFITKHTDIIYTILDNMQYRDQIPSPLIIINIKIVIIDKYHNRSMENRNQHHDETGETTITNVKLLATECLKDLSGRVDNMTVASLVTTIVNYLDSHQKWNFEKFAVHALTSVTQSIKGQNYTIMLTSFLRHLELDHPPTVTKEIVLTSVAIVNDTTSSINMVVTSLLKILVRSIENSSKHLPDVDQQFSLQNSIVESIGLIGRKIKSTGKKVEIMNQIINSLRDIIKSNNSTTNNLINLITFSFVQCISQVASTLNDLVVGPSLVPLLDLTSKLIGIHQSPTTSHQTKTFIQSTFQSFLIQQIQFKSLFDQLMNQQIIQFNNNDGVLEFLNNCSKPIIETIISGLKSKNNQPDNIISIFKTLVALLIREKSKQIQYSIPMLLKLESEIDDNNNSNQLPIRLVRSIHLLISSYLIVVARLYRSKELEDYVEQVSNYRKSMNIHCKYLLFDIKSLSGLVIANTQKHIYSDQDQDISTLVSGSSSSSSTTIATTKITTQTTLVTSTTIEETITTQETFEKIENKEKEEEKQEEEEIEEPKEERKDIINHEKVIEILCAIQSLCAEIPNLKSILLEGADPNNLSTISNLQILQQTPPPPRIVTNEINSNTTTTATISNDGYLNEVNTTTTTTTTTITSPMKLPILNKSRESVVLSSTIPTMFQKSLTFDSFKQFVNYFDENNHAVNGVTAAANQQAQQIQNGSISGVVKVERNNVHNAIFEQTFELTCAKIVEAQHINKEYSDLMEILKLSEQQNLIENNNNNRAPIFIN", "length": 946 }, "evidence": [ { "id": "A0A481CVU6", "url": "https://omabrowser.org/oma/group/A0A481CVU6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q6ZQ18-1", "protein_name": "Protein EFR3 homolog B", "gene_name": "Efr3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MYGVCGCCGALRPRYKRLVDNIFPEDPEDGLVKTNMEKLTFYALSAPEKLDRIGAYLSERLIRDVGRHRYGYVCIAMEALDQLLMACHCQSINLFVESFLKMVAKLLESEKPNLQILGTNSFVKFANIEEDTPSYHRSYDFFVSRFSEMCHSSHDDLEIKTKIRMSGIKGLQGVVRKTVNDELQANIWDPQHMDKIVPSLLFNLQHVEEAESRSPSPLQAPEKEKENPAELAERCLRELLGRAAFGNIKNAIKPVLIHLDNHSLWEPKVFATRCFKIIMYSIQPQHSHLVIQQLLSHLDANSRSAATVRAGIVEVLSEAAIIAATGSVGPTVLEMFNTLLRQLRLSIDYALTGSYDGAVSLGSKIIKEHEECMFQEAVIKTIGSFASTLPTYQRSEVILFIMSKVPLPSVHHPVETGRTGENRNRLTQIMLLKSLLQVSTGFQCNNMMSALPSNFLDRLLSTALMEDAEIRLFVLEILISFIDRHGNRHKFSTISTLGDISVLKLKVDKCSRQDTVFMKKHSQQLYRHIYLSCKEETNIQKHYEALYGLLALISIELANEEVVVDLIRLVLAVQDVAQVNEENLPTYNRCALYALGAAYLNLISQLTTVPAFCQHIHEVIETRKKEAPYMLPEDVFVEKPRLSQNLDGVVIEFLFRQSKISEVLGGSGYNSDRLCLPYIPQLTDEDRLSKRKSIGETISLQVEVESRNSPEKEERVPAEEITYETLKKAIVDSVAVEEQERERQRQVVEKFQKAPFEEIAAHCGARASLLQSKLNQIFEITIRPPPSPSGTISAAYGQPQNHSIPVYEMKFPDLCVY", "length": 817 }, "evidence": [ { "id": "A0A481CVU6", "url": "https://omabrowser.org/oma/group/A0A481CVU6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IGJ0-2", "protein_name": "Protein EFR3 homolog cmp44E", "gene_name": "stmA", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MALIRCCFEPPELPEFFDSFVQKCTDPSCCCGCCSALRPRYKRLVDNIFPVNPEDGLVKSNMEKLTFYSLSSPDKLDRIGEYLYQKATKDINRKRYKLAEIAMEAMDLLLQACHAQTTLNLFVESFLRMVQKLLEDSNPNLKIMATNSFVKFANINEDTPSYHRRYDFFISKFSSMCHSDAASMRDSLRLAGIKGLQGVIRKTVSDDLVENIWEAEHMEKIVPSLLFNMQFCVNVMFVKKNLLASGDLTPVEDATNVTPPALAEEVLRELVGRASFGHIRSVLKPLLTHLDRHELWVPNTFAIHTFRIVMISIQPQYSYTVVETLMQHLDNNFKSSPKTRTSLAVVLSKIIAIAAGESVGPSALDIINNLLTHLRTSVSTTSEITPEESQYQEALINALGEFANHHPDYQKIEIMLFIMNTVPDLSKKSKGDQMLQNILLKSLLKVGTQYSTVSFEKAFPASFLQPLLKMARAPHNPTRMVVMQILQALLDRHQNEQVLSSVSVKPYPALSQEPPSRSDIIFTHKYGANIMQALIDSMALSDRVDALTSSFNTAALLIVEMSCNETVQEFLLFILGIQQVACTVDTLGNVHKCSLHAISIGLLVLISRVSGINNLLEYAQKIVDARREEASHFLPPLLEPKKLAGKTFNLQLPHLAIDKLALGECLQNAGMDAQRLNTGAPYSLNQTDHPGHRHSWVESVSNQLTQRNSSADLTVYNGDVDSVSSSPGVCKKLLAPEFNFDAMKRALAEPTEAAKREQRERQMQIVRTFREGEFDDLMRRTEPKHDLIQNRLNELFNSLAVERQITQSDTKSSQLQASNEKPIYETNFPELFYY", "length": 834 }, "evidence": [ { "id": "A0A481CVU6", "url": "https://omabrowser.org/oma/group/A0A481CVU6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y2G0-1", "protein_name": "Protein EFR3 homolog B", "gene_name": "EFR3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MYGVCGCCGALRPRYKRLVDNIFPEDPEDGLVKTNMEKLTFYALSAPEKLDRIGAYLSERLIRDVGRHRYGYVCIAMEALDQLLMACHCQSINLFVESFLKMVAKLLESEKPNLQILGTNSFVKFANIEEDTPSYHRSYDFFVSRFSEMCHSSHDDLEIKTKIRMSGIKGLQGVVRKTVNDELQANIWDPQHMDKIVPSLLFNLQHVEEAESRSPSPLQAPEKEKESPAELAERCLRELLGRAAFGNIKNAIKPVLIHLDNHSLWEPKVFAIRCFKIIMYSIQPQHSHLVIQQLLGHLDANSRSAATVRAGIVEVLSEAAVIAATGSVGPTVLEMFNTLLRQLRLSIDYALTGSYDGAVSLGTKIIKEHEERMFQEAVIKTVGSFASTLPTYQRSEVILFIMSKVPRPSLHQAVDTGRTGENRNRLTQIMLLKSLLQVSTGFQCNNMMSALPSNFLDRLLSTALMEDAEIRLFVLEILISFIDRHGNRHKFSTISTLSDISVLKLKVDKCSRQDTVFMKKHSQQLYRHIYLSCKEETNVQKHYEALYGLLALISIELANEEVVVDLIRLVLAVQDVAQVNEENLPVYNRCALYALGAAYLNLISQLTTVPAFCQHIHEVIETRKKEAPYMLPEDVFVERPRLSQNLDGVVIELLFRQSKISEVLGGSGYNSDRLCLPYIPQLTDEDRLSKRRSIGETISLQVEVESRNSPEKEERVPAEEITYETLKKAIVDSVAVEEQERERRRQVVEKFQKAPFEEIAAHCGARASLLQSKLNQIFEITIRPPPSPSGTITAAYGQPQNHSIPVYEMKFPDLCVY", "length": 817 }, "evidence": [ { "id": "A0A481CVU6", "url": "https://omabrowser.org/oma/group/A0A481CVU6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A481CVU6", "url": "https://www.uniprot.org/uniprotkb/A0A481CVU6" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A481CVU6", "url": "https://www.uniprot.org/uniprotkb/A0A481CVU6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein localization to plasma membrane", "id": "GO:0072659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072659", "evidence": [ { "database": "UniProtKB", "id": "A0A481CVU6", "url": "https://www.uniprot.org/uniprotkb/A0A481CVU6" } ], "pmid": "" }, { "name": "phosphatidylinositol phosphate biosynthetic process", "id": "GO:0046854", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046854", "evidence": [ { "database": "UniProtKB", "id": "A0A481CVU6", "url": "https://www.uniprot.org/uniprotkb/A0A481CVU6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" }, { "start_pos": 801, "end_pos": 803, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 331 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 261, "end_pos": 263 }, { "start_pos": 801, "end_pos": 803 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A481DCA9-1", "uniprot_ac": "A0A481DCA9", "uniprot_id": "A0A481DCA9_PIG", "mass": { "chemical_mass": 104695.0, "monoisotopic_mass": 104695.0 }, "refseq": { "ac": "XP_020950886", "name": "centrosomal protein of 104 kDa isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950886" }, "gene_names": [ { "name": "CEP104", "type": "recommended", "evidence": [ { "id": "A0A481DCA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481DCA9" } ] }, { "name": "CEP104", "type": "synonym", "evidence": [ { "id": "XP_020950886", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950886" } ] } ], "protein_names": [ { "name": "Centrosomal protein of 104 kDa", "type": "recommended", "evidence": [ { "id": "A0A481DCA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A481DCA9/entry#names_and_taxonomy" } ] }, { "name": "centrosomal protein of 104 kDa isoform X4", "type": "synonym", "evidence": [ { "id": "XP_020950886", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950886" } ] } ], "function": [ { "annotation": "Required for ciliogenesis and for structural integrity at the ciliary tip.", "evidence": [ { "database": "UniProtKB", "id": "A0A481DCA9", "url": "https://www.uniprot.org/uniprotkb/A0A481DCA9#function" }, { "database": "UniProtKB", "id": "ARBA00059645", "url": "https://www.uniprot.org/uniprotkb/ARBA00059645#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A481DCA9", "url": "https://www.uniprot.org/uniprotkb/A0A481DCA9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CEP104", "url": "https://www.uniprot.org/uniprotkb/A0A481DCA9", "locus": { "chromosome": "6", "start_pos": 65274488, "end_pos": 65310669, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003362", "url": "https://www.ensembl.org/id/ENSSSCG00000003362" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003362", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003362", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "106510608", "url": "https://www.ncbi.nlm.nih.gov/gene/106510608", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034085", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034085", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048738", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048738", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048739", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048739", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052607", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052607", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13371", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13371", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13371:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13371:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21039", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21039", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21040", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21040", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020950886", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950886", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A481DCA9", "url": "https://www.uniprot.org/uniprotkb/A0A481DCA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481DCA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A481DCA9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPHKIGFVVVSSSGHEDGFSARELMIHAPTISGWRSPRFCQFPQEIVLQMVERCRIRKLQLLAHQYMIASKIEFYVSESLPEYFVPYQAERFRRLGYVSLCDNEKTGCKARELKSVYVDAVGQFLKLIFHQNHVNKYNVYNQVALVAINIIGDPADFGDESNIPSREKLIDHYLGHTAEDPALEGTCSGKSDYISPLDDLAFDMYQDPEVAQIIRRLDERKREAVRQERYDHAKKLKQAIADLHKVGERLGRYEVEKRCAVEKEDYDLAKEKKRQMEQYRLRVYQQLQLHDLAGAELMRRPLDLPLQPLVRPGSPRHQQPVLPPPQPEEKGTETQLAAPFLEEKPSSRLLEASPQHPTVHRPPPAADPPPKTHLESLPYDERPLPVTRKQPGRVAAEPEPERSAMEPAEAPRGGVVGEPEPLTEKALREASSAVDVLGEALVAAAYSKTWSHREESLLALSAQLADLPLGTPKEAVKNALRAAVFLVRRAARDIVTPVFQASLKLLKMIITQYIPKHKLSKLETAHCVERTIPVLLTRTGDSSARLRVIASNFIQEVALFKEVRSLQIIPSYLVQPLKANCSAHLAMSQMSLLARLLKDLGTEGTGFTVDSVMKFSVRALEHRAREVREAAVRMILDLYAQHRSPVLEHLPPDDSAARRNVLYKTLFEGFARIDGRPADTQVRIIPHQVQKRAAADEAEKRKKEEMKALHGQLAALEGAQAESQDKESQAAEARRPAPQGREAAPPRAPEIPENQDLDNLCIFCGERSEAFTEEGLDLHYWKHCLMLTRCDHCRQVVEISSLTEHLLTECDRRDSFGKCYRCSEAVLKEELPRHLKTKDCNPAKPEKLANRCPLCHENFSPGEEAWKAHLMGPMGCTLNLRRTHLLPRPPALPPGKGPATTTSGTSGPRGGSKIPTPKGGLSRRSGRTCTKR", "length": 932, "header": "tr|A0A481DCA9-1|A0A481DCA9_PIG Isoform 1 of Centrosomal protein of 104 kDa OS=Sus scrofa OX=9823 GN=CEP104 PE=4 SV=1 CANONICAL=A0A481DCA9-1" }, "isoforms": [ { "isoform_ac": "A0A481DCA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A481DCA9/entry#A0A481DCA9-1", "sequence": { "sequence": "MPHKIGFVVVSSSGHEDGFSARELMIHAPTISGWRSPRFCQFPQEIVLQMVERCRIRKLQLLAHQYMIASKIEFYVSESLPEYFVPYQAERFRRLGYVSLCDNEKTGCKARELKSVYVDAVGQFLKLIFHQNHVNKYNVYNQVALVAINIIGDPADFGDESNIPSREKLIDHYLGHTAEDPALEGTCSGKSDYISPLDDLAFDMYQDPEVAQIIRRLDERKREAVRQERYDHAKKLKQAIADLHKVGERLGRYEVEKRCAVEKEDYDLAKEKKRQMEQYRLRVYQQLQLHDLAGAELMRRPLDLPLQPLVRPGSPRHQQPVLPPPQPEEKGTETQLAAPFLEEKPSSRLLEASPQHPTVHRPPPAADPPPKTHLESLPYDERPLPVTRKQPGRVAAEPEPERSAMEPAEAPRGGVVGEPEPLTEKALREASSAVDVLGEALVAAAYSKTWSHREESLLALSAQLADLPLGTPKEAVKNALRAAVFLVRRAARDIVTPVFQASLKLLKMIITQYIPKHKLSKLETAHCVERTIPVLLTRTGDSSARLRVIASNFIQEVALFKEVRSLQIIPSYLVQPLKANCSAHLAMSQMSLLARLLKDLGTEGTGFTVDSVMKFSVRALEHRAREVREAAVRMILDLYAQHRSPVLEHLPPDDSAARRNVLYKTLFEGFARIDGRPADTQVRIIPHQVQKRAAADEAEKRKKEEMKALHGQLAALEGAQAESQDKESQAAEARRPAPQGREAAPPRAPEIPENQDLDNLCIFCGERSEAFTEEGLDLHYWKHCLMLTRCDHCRQVVEISSLTEHLLTECDRRDSFGKCYRCSEAVLKEELPRHLKTKDCNPAKPEKLANRCPLCHENFSPGEEAWKAHLMGPMGCTLNLRRTHLLPRPPALPPGKGPATTTSGTSGPRGGSKIPTPKGGLSRRSGRTCTKR", "length": 932, "header": "tr|A0A481DCA9-1|A0A481DCA9_PIG Isoform 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"Ensembl Peptide", "id": "ENSSSCP00000079500.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079500.1" } ] } }, { "isoform_ac": "F1RGE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFP9/entry#F1RGE7-1", "sequence": { "sequence": "MLGKDYMLAIILVNCDDDLWGDQSLEGEPGLPPGWRKIRDAAGTYYWHVPSGSTQWQRPTWEPGDAESGTRTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGEESHIQRMEPGAKCFAVRSLGWVEVPEEDLVPGKSSIAVNNCIQQLAQTRSRGQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRPISDPARDFAFVAGDKDSCMLKCHVFRCDVPAKAIASALHGLCAQILSERVGVSGDSPCCSLDPISPEDLPRQVELLDAVSQAAQKYEALFMGTLPVTKAMGMDVLNEAIGTLTTRGDRDAWVPAMLSVSDSLMTAHPIQAEAGAEEEPLWECPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSVDSPGGPLPLPLLKGGVGGAGAAPRKRSVFSFLDAFRLKPSLLHMP", "length": 490, "header": "tr|F1RGE7-1|A0A4X1SFP9_PIG Computationally mapped isoform of Amyloid-beta A4 precursor protein-binding family B member 3 OS=Sus scrofa OX=9823 GN=APBB3 PE=4 SV=4 CANONICAL=A0A4X1SFP9-1" }, "locus": { "chromosome": "2", "start_pos": 142320395, "end_pos": 142314380, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015695.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015695.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015282.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015282.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder 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"database": "Ensembl Peptide", "id": "ENSSSCP00000076810.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076810.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 438, "start_aa": "Thr", "end_pos": 438, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr438", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 464, "start_aa": 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"A0A8W4FBW2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBW2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512069", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512069", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZCS6-1", "protein_name": "Otopetrin 2", "gene_name": "Otop2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEELVPHPNESLPGPRASPREVWKKGGRLLSVLLAVNVLLLACTLISGGAFNKVAVYDTDVFALLTTMMLLAALWIIFYLLRTARSPDAVPYRDAHAGPIWLRGGLVLFGICTLVMDVFKTGYYSSFFECQSAIKILHPITQAVFVIVQTYFLWISAKDCIHTHLDLTRCGLMFTLATNLAIWMTAVVDESVHQAHSFSGFHGNTSHTRLTPDSERAGGTAEGDPCPCSTAICQIFQQGYFYLYPFNIEYSLFASTMLYVMWKNVGRLLASAHGHGHTPSRVSLFRETFFAGPVLGLLLFVVGLAVFILYEVQVSGERGHTQQALVIYYSFNIVCLGLMTLVSLSGSVIYRFDRRAMDHHKNPTRTLDVALLMGAALGQYAISYYSIVAVVVGSPRDLLGALNLSHALLMIAQHTFQNVFIIESLHRGPPGAEPRETPPKELYQGITFANLSAIHTLPSCPPTPRLVSPNPEGPQEAVAIVSAPRCHWRRRCLKDISLFLLLCNVILWIMPAFGARPHFSNTVEVDFYGYSLWAAIVNICLPFGIFYRMHAVSSLLEVYVLS", "length": 563 }, "evidence": [ { "id": "A0A4X1SFQ1", "url": "https://omabrowser.org/oma/group/A0A4X1SFQ1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MZ55-1", "protein_name": "Otopetrin 2", "gene_name": "OTOP2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSTELPSDPKESPPAPRPAPREVWKKGGRLLSVLLAVNVLLLACTLISGGAFNKVAVYDTDVFALLTTMLLLAMVWILFYLLGTARCPNGVPYRDAHAGPIWLRGGLVLFGICTLIMDVFKTGYYSSFFECQSAIKILYPLTQAVFVIVQTYFLWVSAKDCVHTHLDLTRCGLMLTLTTNLAIWMAAVVDESVHQSHSHSSSHSNTSHTRLALDLERASSAVGGDCSCDTAVCQIFQQGYFYLYPFNIEYSLFASTMLYVMWKNVGRLLASSTPSHSHAPSPVSLFRETFFAGPVLGLMLFVVGLAVFIIYEVQVSGEQSRTQQALVTYYSFNIVCLGLMTLVSLSGSVIYRFDRRAMDQHKNPTRTLDVALLMGAALGQYAISYYSIVAVVAGTPRDLLAGLNLAHALLMIAQHTFQNVFIIESLHRGPPSAEPHDTPPKEPCHGLTFANLDALHTLPACPPTPRLVGPSPAGPQEAASIIVAPRSHWRRRCLKDISLFLLLCNIILWIMPAFGARPHFSNTVEVDFYGYSLWAAIVNICLPFGIFYRMHAVSSLLEVYVMS", "length": 563 }, "evidence": [ { "id": "A0A4X1SFQ1", "url": "https://omabrowser.org/oma/group/A0A4X1SFQ1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3GTG4-1", "protein_name": "Proton channel OTOP2", "gene_name": "Otop2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSEELVQHPKESLPGPRASPREVWKKGGRLLSVLLAVNVLLLACTLISGGAFNKVAVYDTDVFALLTTMTLLATLWIVFYLLRTARCRDAVPYRDAHAGPIWLRGGLVLFGICTLVMDVFKTGYYSSFFECQSAIKILHPIIQAVFVIVQTYFLWVSAKDCIHTHLDLTRCGLMFTLTTNLAIWMAAVVDESVHQAHSYSGSHGNTSHTRLAPDPERAGGTAGGDPCPCSTAICQIFQQGYFYLYPFNIEYSLFASTMLYVMWKNVGRLLAPTHGHGHTPSRVSLFRETFFAGPILGLLLFVVGLAVFILYEVQVSGERDHTQKALVTYYSFNIVCLGLMTLVSLSGSVIYRFDQRAMDHHKNPTRTLDVALLMGAALGQYAISYYSIVAVVVGSPRDLLGALNLSHALLLIAQHTFQNVFIIESLHRGPPGAEPCEMPPKEPCQGITFANLDAIHTLPSCPPTPRLVSSNPESPQEAVAIISAPRCHWRRRCLKDISLFLLLCNVILWIMPAFGARPHFSNTVEVDFYGYSLWAAIVNICLPFGIFYRMHAVSSLLEVYVLS", "length": 563 }, "evidence": [ { "id": "A0A4X1SFQ1", "url": "https://omabrowser.org/oma/group/A0A4X1SFQ1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q7RTS6-1", "protein_name": "Proton channel OTOP2", "gene_name": "OTOP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"A0A4X1SFQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFQ1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "proton channel activity", "id": "GO:0015252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015252", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SFQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFQ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proton transmembrane transport", "id": "GO:1902600", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902600", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SFQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFQ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], 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{ "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1SFU0-1", "uniprot_ac": "A0A4X1SFU0", "uniprot_id": "A0A4X1SFU0_PIG", "mass": { "chemical_mass": 22771.0, "monoisotopic_mass": 22771.0 }, "refseq": { "ac": "XP_003360416", "name": "polyadenylate-binding protein 1-like 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360416" }, "gene_names": [ { "name": "PABPC1L2A", "type": "synonym", "evidence": [ { "id": "XP_003360416", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360416" } ] } ], "protein_names": [ { "name": "Poly(A) binding protein cytoplasmic 1 like 2A", "type": "synonym", "evidence": [ { "id": "A0A4X1SFU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFU0/entry#names_and_taxonomy" } ] }, { "name": "polyadenylate-binding protein 1-like 2", "type": "synonym", "evidence": [ { "id": "XP_003360416", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360416" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SFU0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFU0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFU0", "locus": {} } ], "crossref": [ { "id": "cd12378", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12378", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12379", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12379", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525442", "url": "https://www.ncbi.nlm.nih.gov/gene/100525442", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "100623240", "url": "https://www.ncbi.nlm.nih.gov/gene/100623240", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034364", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034364", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525442", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525442", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ssc:100623240", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623240", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IVWELMI", "url": "https://omabrowser.org/oma/group/IVWELMI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SFU0", "url": "https://www.orthodb.org/?gene=A0A4X1SFU0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24012", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24012", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003360416", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360416", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1SFU0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SFU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFU0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEEATLR", "length": 200, "header": "tr|A0A4X1SFU0-1|A0A4X1SFU0_PIG Isoform 1 of Poly(A) binding protein cytoplasmic 1 like 2A OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1SFU0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SFU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFU0/entry#A0A4X1SFU0-1", "sequence": { "sequence": "MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEEATLR", "length": 200, "header": "tr|A0A4X1SFU0-1|A0A4X1SFU0_PIG Isoform 1 of Poly(A) binding protein cytoplasmic 1 like 2A OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1SFU0-1" }, "locus": { "chromosome": "X", "start_pos": 58831076, "end_pos": 58830477, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095493.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095493.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080821.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080821.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SFU0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SFU0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525442", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525442", "resource": "KEGG Pathway" }, { "id": "ssc:100623240", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623240", "resource": "KEGG Pathway" } ], 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"MWTNFFKLRLFCCVLAVLMVVVLVINVTQVEYLDHATASATFIDSSGQFVSSQVTGISRNPYCGYEHQILSSRERLEEDSLLAALQWQLPDVGPIPFLKSTDPSSSYFVILNSAAFFKVGSQLEVLVHVQDFQRKPKKYGGDYLQARIHSPKLQAGAVGRVVDYQNGFYKVFFTLLWPGRVKVSISLVHPSEGIRVLQHLQEEKPDRVYFKSLFRSGRISETTECNVCLPGSLPLCNFTDLYTGEPWFCFKPKKLPCSSRINHFKGGYLKGLLTAAESAFFQSGVNIKMPINSSGPDWVTVIPRSIKEMNSLELSQGLGTFPSGYYYKDQWRPRKFKMRQFNDPDNITECLQRKVVYLFGDSTIRQWFEYLTTFVPDLVEFNLGSPKNVGPFLAVDQKHNILLKYRCHGPPIRFTTVFSNDLRYVANELNGIVGGKNTVVAIAVWSHFSTFPLEVYIRRLRNIRRAVVQLLDRSPKTVVVIRTANAQELGPEVSLFNSDWYNFQLDTILRKMFSGVGVYLVDAWEMTLAHYLPHKLHPDEVIVKNQLDMFLSFVCPLET", "length": 559, "header": "tr|A0A4X1SHH8-1|A0A4X1SHH8_PIG Isoform 1 of Neurexophilin and PC-esterase domain family member 3 OS=Sus scrofa OX=9823 GN=NXPE3 PE=3 SV=1 CANONICAL=A0A4X1SHH8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SHH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHH8/entry#A0A4X1SHH8-1", "sequence": { "sequence": 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"Ensembl Peptide", "id": "ENSSSCP00000049671.3", "url": "https://www.ensembl.org/id/ENSSSCP00000049671.3" } ] } }, { "isoform_ac": "F1SL20-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHH8/entry#F1SL20-1", "sequence": { "sequence": "MPINSSGPDWVTVIPRSIKEMNSLELSQGLGTFPSGYYYKDQWRPRKFKMRQFNDPTTLQNAYREKWCIYLVTRQSDNGLNISLHLFQI", "length": 89, "header": "tr|F1SL20-1|A0A4X1SHH8_PIG Computationally mapped isoform of Neurexophilin and PC-esterase domain family member 3 OS=Sus scrofa OX=9823 GN=NXPE3 PE=3 SV=2 CANONICAL=A0A4X1SHH8-1" }, "locus": { "chromosome": "13", "start_pos": 157313020, "end_pos": 157300556, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013076.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013076.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012731.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012731.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SL20", "url": "https://www.uniprot.org/uniprotkb/F1SL20" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520806", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520806", "resource": "KEGG 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"id": "A0A4X1SHS6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SHS6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006661", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006661", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100514766", "url": "https://www.ncbi.nlm.nih.gov/gene/100514766", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001619", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001619", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027482", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027482", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036045", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036045", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043127", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043127", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514766", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514766", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VHQLNNA", "url": "https://omabrowser.org/oma/group/VHQLNNA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SHS6", "url": "https://www.orthodb.org/?gene=A0A4X1SHS6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11679", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11679", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00995", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00995", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6811438", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811438", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983231", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983231", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231923", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231923", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1SHS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SHS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHS6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SHV4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SHV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHV4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SHY1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SHY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHY1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RNL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RNL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RNL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RNL2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0MC35", "url": "https://www.uniprot.org/uniprotkb/A0A8D0MC35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0MC35-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0MC35-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1CXI4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1CXI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1CXI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1CXI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNREIMKHLKAICFLRPTKENVDYLIQELRRPKYSIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYIAVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSSEAAKRLAECVKQVITKEYELFEFRRTEVPPLLLILDRCDDAITPLLNQWTYQAMVHELLGINNNRIDLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSNIKNLMEDFQKKKPKEQQKLESIADMKAFVENYPQFKKMSGTVSKHVTVVGELSRLVSERNLLEVSEVEQELACQNDHSSALQNVKRLLQNPKVTEFDAARLVMLYALHYERHSSNSLPGLMMDLRNKGVSEKYRKLVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGKLKENLYPYLGPSTLRDRPQDIIVFIIGGATYEEALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEVLASGLHSRSKESSQVTSRSASRR", "length": 570, "header": "tr|A0A4X1SHS6-1|A0A4X1SHS6_PIG Isoform 1 of Vacuolar protein sorting-associated protein 45 OS=Sus scrofa OX=9823 GN=VPS45 PE=1 SV=1 CANONICAL=A0A4X1SHS6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SHS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHS6/entry#A0A4X1SHS6-1", "sequence": { "sequence": "MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNREIMKHLKAICFLRPTKENVDYLIQELRRPKYSIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYIAVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSSEAAKRLAECVKQVITKEYELFEFRRTEVPPLLLILDRCDDAITPLLNQWTYQAMVHELLGINNNRIDLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSNIKNLMEDFQKKKPKEQQKLESIADMKAFVENYPQFKKMSGTVSKHVTVVGELSRLVSERNLLEVSEVEQELACQNDHSSALQNVKRLLQNPKVTEFDAARLVMLYALHYERHSSNSLPGLMMDLRNKGVSEKYRKLVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGKLKENLYPYLGPSTLRDRPQDIIVFIIGGATYEEALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEVLASGLHSRSKESSQVTSRSASRR", "length": 570, "header": "tr|A0A4X1SHS6-1|A0A4X1SHS6_PIG Isoform 1 of Vacuolar protein sorting-associated protein 45 OS=Sus scrofa OX=9823 GN=VPS45 PE=1 SV=1 CANONICAL=A0A4X1SHS6-1" }, "locus": { "chromosome": "4", "start_pos": 99010459, "end_pos": 98940139, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007298.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007298.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007103.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007103.3" } ] } }, { "isoform_ac": "A0A4X1SHV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHS6/entry#A0A4X1SHV4-1", "sequence": { "sequence": "MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNREIMKHLKAICFLRPTKENVDYLIQELRRPKYSIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYIAVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSSEAAKRLAECVKWTYQAMVHELLGINNNRIDLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSNIKNLMEDFQKKKPKEQQKLESIADMKAFVENYPQFKKMSGTVSKHVTVVGELSRLVSERNLLEVSEVEQELACQNDHSSALQNVKRLLQNPKVTEFDAARLVMLYALHYERHSSNSLPGLMMDLRNKGVSEKYRKLVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGKLKENLYPYLGPSTLRDRPQDIIVFIIGGATYEEALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEVLASGLHSRSKESSQVTSRSASRR", "length": 533, "header": "tr|A0A4X1SHV4-1|A0A4X1SHV4_PIG Computationally mapped isoform of Vacuolar protein sorting-associated protein 45 OS=Sus scrofa OX=9823 GN=VPS45 PE=1 SV=1 CANONICAL=A0A4X1SHS6-1" }, "locus": { "chromosome": "4", "start_pos": 99010459, "end_pos": 98940139, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053229.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053229.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047290.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047290.1" } ] } }, { "isoform_ac": "A0A4X1SHY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHS6/entry#A0A4X1SHY1-1", "sequence": { "sequence": "MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNREIMKHLKAICFLRPTKENVDYLIQELRRPKYSIYFIYFSNVISKSDVKSLAEADEQEVVAEVQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSSEAAKRLAECVKQVITKEYELFEFRRTEVPPLLLILDRCDDAITPLLNQWTYQAMVHELLGINNNRIDLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSNIKNLMEDFQKKKPKEQQKLESIADMKAFVENYPQFKKMSGTVSKHVTVVGELSRLVSERNLLEVSEVEQELACQNDHSSALQNVKRLLQNPKVTEFDAARLVMLYALHYERHSSNSLPGLMMDLRNKGVSEKYRKLVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGKLKENLYPYLGPSTLRDRPQDIIVFIIGGATYEEALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEVLASGLHSRSKESSQVTSRSASRR", "length": 547, "header": "tr|A0A4X1SHY1-1|A0A4X1SHY1_PIG Computationally mapped isoform of Vacuolar protein sorting-associated protein 45 OS=Sus scrofa OX=9823 GN=VPS45 PE=1 SV=1 CANONICAL=A0A4X1SHS6-1" }, "locus": { "chromosome": "4", "start_pos": 99010459, "end_pos": 98940139, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060515.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060515.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045873.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045873.1" } ] } }, { "isoform_ac": "A0A5G2RNL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHS6/entry#A0A5G2RNL2-1", "sequence": { "sequence": "MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNREIMKHLKAICFLRPTKVLHKLSCHLARQIQHTII", "length": 94, "header": "tr|A0A5G2RNL2-1|A0A4X1SHS6_PIG Computationally mapped isoform of Vacuolar protein sorting-associated protein 45 OS=Sus scrofa OX=9823 GN=VPS45 PE=1 SV=1 CANONICAL=A0A4X1SHS6-1" }, "locus": { "chromosome": "4", "start_pos": 99010459, "end_pos": 99009541, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090515.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090515.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074481.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074481.1" } ] } }, { "isoform_ac": "A0A8D0MC35-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHS6/entry#A0A8D0MC35-1", "sequence": { "sequence": "MNVVFAVKQYISKMIEDSGPGMKVLLMDKETENVDYLIQELRRPKYSIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYIAVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSSEAAKRLAECVKQVITKEYELFEFRRTEVPPLLLILDRCDDAITPLLNQWTYQAMVHELLGINNNRIDLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSNIKNLMEDFQKKKPKEQQKLESIADMKAFVENYPQFKKMSGTVSKHVTVVGELSRLVSERNLLEVSEVEQELACQNDHSSALQNVKRLLQNPKVTEFDAARLVMLYALHYERHSSNSLPGLMMDLRNKGVSEKYRKLVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGKLKENLYPYLGPSTLRDRPQDIIVFIIGGATYEEALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEVLASGLHSRSKESSQVTSRSASRR", "length": 525, "header": "tr|A0A8D0MC35-1|A0A4X1SHS6_PIG Computationally mapped isoform of Vacuolar protein sorting-associated protein 45 OS=Sus scrofa OX=9823 GN=VPS45 PE=1 SV=1 CANONICAL=A0A4X1SHS6-1" }, "locus": { "chromosome": "4", "start_pos": 99010459, "end_pos": 98940139, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071352.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071352.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068019.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068019.1" } ] } }, { "isoform_ac": "A0A8D1CXI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHS6/entry#A0A8D1CXI4-1", "sequence": { "sequence": "MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNREIMKHLKAICFLRPTKENVDYLIQELRRPKYSIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYIAVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSSEAAKRLAECVKQVITKEYELFEFRRTEVPPLLLILDRCDDAITPLLNQWTYQAMVHELLGINNNRIDLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSNIKNLMEDFQKKKPKEQQKLESIADMKAFVENYPQFKKMSGTVSKHVTVVGELSRLVSERNLLEVSEVEQELACQNDHSSALQNVKRLLQNPKVTEFDAARLVMLYALHYERHSSNSLPGLMMDLRNKGVSEKYRKLVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGKLKENLYPYLGPSTLRDRPQDIIVFIIGGATYEEALTVYNLNRTTPGVRIVLGGTTVHNTKRLLQSTE", "length": 548, "header": "tr|A0A8D1CXI4-1|A0A4X1SHS6_PIG Computationally mapped isoform of Vacuolar protein sorting-associated protein 45 OS=Sus scrofa OX=9823 GN=VPS45 PE=1 SV=1 CANONICAL=A0A4X1SHS6-1" }, "locus": { "chromosome": "4", "start_pos": 99010459, "end_pos": 98968136, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071423.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071423.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066748.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066748.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RNL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RNL2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514766", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514766", "resource": "KEGG Pathway" }, { "id": "R-SSC-6811438", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811438", "resource": "Reactome", "description": "Intra-Golgi traffic" }, { "id": "R-SSC-983231", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983231", "resource": "Reactome", "description": "Factors involved in megakaryocyte development and platelet production" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AGN0-1", "protein_name": "Vacuolar protein sorting-associated protein 45", "gene_name": "VPS45", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MNAVLAVKQYVSKMIEDSGPGMKVLLMDRETPGAVSMVYTQSEILQKEVYLFERIDSPGREPMKHLKAVCFLRPTKENVDYLIQELRRPKYSIYYIYFSNVISKSDIKALAEADEQEVVAEIQEFYGDYIAVNPHVFSLNLLGCCQGRSWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSSEPAKRLAECVKQVITKEYELFDFRRTEVPPLLLILDRSDDAITPLLNQWTYQAMVHELLGINNNRVDLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSNIKNLMEDFQKRKPKEQQKLESIADMKAFVENYPQFKKMSGTVSKHVTVVGELSRLVGERNLLEVSEVEQELACHNDHSSALQNVRRLLQNPKVTELDAARLVMLYALHYERHSSNSLPGLMADLKNRGVSERYRKLVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPLLQETLDQLIKGKLKDSQYPYLGPNTLRDRPQDIIVFIIGGATYEEALTVYNLNRTNPGVRVVLGGTTIHNTRSFLEEVTASGFRGRSTESSHAAPRPSSRR", "length": 570 }, "evidence": [ { "id": "A0A4X1SHS6", "url": "https://omabrowser.org/oma/group/A0A4X1SHS6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A8E7N5-1", "protein_name": "Vacuolar protein sorting-associated protein 45", "gene_name": "vps45", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNVTLAVKQYISKMIESSGPGMKVLLMDKETTSIVSVVYTQSEILQKEVYLFERIDSQNRDNMKHLKAICFLRPTKENVEHLIQELRRPKYSVYFIYFSNVISKSEVKALAEADEQEVVAEVQEFYGDFIAVNPHLFSLNLQGVSRGRSWEPSVLPRVTQGLTSVLLSLKKCPMIRYQLSSDMSKRLAESVKQIITKEYELFDFRKTEVPPLLLILDRSDDAITPLLNQWTYQAMVHELLGLNNNRIDLSRVPGISKDLREVVLSAENDEFYANNLYLNFGEIGTNIKNLMEDFQKKKPKDQQKLESISDMKAFVENYPQFKKMSGTVSKHVTVVGELSRLVSERQLMEVSEVEQELACQNDHSNAQQMLRRLLQSPRLSEIDAVRLVMLYALRYEKHSSSILPSLMEELNRKGVSERHRKMVHAVVEYGGKRIRGSDLITPTDAVSITKQFFKGLKGVENVYTQHQPLLHDTLDQLIKGRLKDSQFPYLGPSSLRDRPQDIIVFIIGGATYEEALTVYNLNRTMPGVRIVLGGTHIHNTKSFLEEVMLSVGSGGDRSQIGGRQMSRR", "length": 568 }, "evidence": [ { "id": "A0A4X1SHS6", "url": "https://omabrowser.org/oma/group/A0A4X1SHS6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3H2U9-1", "protein_name": "Vacuolar protein sorting-associated protein 45", "gene_name": "Vps45", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNREIMKHLKAICFLRPTKENVDYLIQELRRPKYSIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYIAVNPHLFSLNILGCCQGRNWDPAQLARTTQGLTALLLSLKKCPMIRYQLSSEAARRLGECVKQVISKEYELFEFRRTEVPPLLLILDRCDDAITPLLNQWTYQAMVHELLGINNNRIDLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSNIKNLMEDFQKKKPKEQQKLESIADMKAFVENYPQFKKMSGTVSKHVTVVGELSRLVSERNLLEVSEVEQELACQNDHSSALQNVKRLLQNPKVTELDAARLVMLYALHYERHSSNSLPGLIVDLRSKGVSEKYRKLVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGKLKENLYPYLGPSTLRDRPQDIIVFVIGGATYEEALTVYNLNRTTPGVRVVLGGTTIHNTKSFLEEVLASGLHSRSRESSQATSRSTSRR", "length": 570 }, "evidence": [ { "id": "A0A4X1SHS6", "url": "https://omabrowser.org/oma/group/A0A4X1SHS6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O08700-1", "protein_name": "Vacuolar protein sorting-associated protein 45", "gene_name": "Vps45", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNREIMKHLKAICFLRPTKENVDSLIQELRRPKYSIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYIAVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSSEAAKRLGECVKQVISKEYELFEFRRTEVPPLLLILDRCDDAITPLLNQWTYQAMVHELLGINNNRIDLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSNIKNLMEDFQKKRPKEQQKLESIADMKAFVENYPQFKKMSGTVSKHVTVVGELSRLVSERNLLEVSEVEQELACQNDHSSALQNVKRLLQNPKVTEFDAVRLVMLYALHYERHSSNSLPGLIVDLRSKGVAEKYRKLVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGKLKENLYPYLGPSTLRDRPQDIIVFVIGGATYEEALTVYNLNRTTPGVRIVLGGTTIHNTKSFLEEVLASGLHSRSRESSQATSRSASRR", "length": 570 }, "evidence": [ { "id": "A0A4X1SHS6", "url": "https://omabrowser.org/oma/group/A0A4X1SHS6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O49048-1", "protein_name": "Vacuolar protein sorting-associated protein 45 homolog", "gene_name": "VPS45", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLVTSVRDYINRMLQDISGMKVLILDSETVSNVSIVYSQSELLQKEVFLVEMIDSISVSKESMSHLKAVYFIRPTSDNIQKLRYQLANPRFGEYHLFFSNLLKDTQIHILADSDEQEVVQQVQEYYADFVSGDPYHFTLNMASNHLYMIPAVVDPSGLQRFSDRVVDGIAAVFLALKRRPVIRYQRTSDTAKRIAHETAKLMYQHESALFDFRRTESSPLLLVIDRRDDPVTPLLNQWTYQAMVHELIGLQDNKVDLKSIGSLPKDQQVEVVLSSEQDAFFKSNMYENFGDIGMNIKRMVDDFQQVAKSNQNIQTVEDMARFVDNYPEYKKMQGNVSKHVTLVTEMSKLVEARKLMTVSQTEQDLACNGGQGAAYEAVTDLLNNESVSDIDRLRLVMLYALRYEKENPVQLMQLFNKLASRSPKYKPGLVQFLLKQAGVEKRTGDLFGNRDLLNIARNMARGLKGVENVYTQHQPLLFQTMESITRGRLRDVDYPFVGDHFQQGRPQEVVIFMVGGTTYEESRSVALQNATNSGVRFILGGTAVLNSKRFLKDLEEAQRISRSGSHMV", "length": 569 }, "evidence": [ { "id": "A0A4X1SHS6", "url": "https://omabrowser.org/oma/group/A0A4X1SHS6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38932-1", "protein_name": "Vacuolar protein sorting-associated protein 45", "gene_name": "VPS45", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MNLFDVADFYINKIVTSQSKLSVANVNEHQRIKVLLLDKNTTPTISLCATQSELLKHEIYLVERIENEQREVSRHLRCLVYVKPTEETLQHLLRELRNPRYGEYQIFFSNIVSKSQLERLAESDDLEAVTKVEEIFQDFFILNQDLFSFDLQPREFLSNKLVWSEGGLTKCTNSLVSVLLSLKIKPDIRYEGASKICERLAKEVSYEIGKNERTFFDFPVMDSTPVLLILDRNTDPITPLLQPWTYQSMINEYIGIKRNIVDLSKVPRIDKDLEKVTLSSKQDAFFRDTMYLNFGELGDKVKQYVTTYKDKTQTNSQINSIEDIKNFIEKYPEFRKLSGNVAKHMAIVGELDRQLKIKNIWEISEIEQNLSAHDANEEDFSDLIKLLQNEAVDKYYKLKLACIYSLNNQTSSDKIRQLVEILSQQLPPEDVNFFHKFKSLFSRQDKMTQSNHDKDDILTELARRFNSRMNSKSNTAENVYMQHIPEISSLLTDLSKNALFRDRFKEIDTQGHRVIGNQQSKDIPQDVILFVIGGVTYEEARLVHDFNGTMNNRMRVVLGGTSILSTKEYMDSIRSAK", "length": 577 }, "evidence": [ { "id": "A0A4X1SHS6", "url": "https://omabrowser.org/oma/group/A0A4X1SHS6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P97390-1", "protein_name": "Vacuolar protein sorting-associated protein 45", "gene_name": "Vps45", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNREIMKHLKAICFLRPTKENVEYLIQELRRPKYSIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYIAVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSSEAAKRLGECVKQVISKEYELFEFRRTEVPPLLLILDRCDDAITPLLNQWTYQAMVHELLGINNNRIDLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSNIKNLMEDFQKKRPKEQQKLESIADMKAFVENYPQFKKMSGTVSKHVTVVGELSRLVSERNLLEVSEVEQELACQNDHSSALQNVKRLLQNPKVTEFDAVRLVMLYALHYERHSSNSLPGLIVDLRSKGVAEKYRKLVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGRLKENLYPYLGPSTLRDRPQDIIVFIIGGATYEEALTVYNLNRTTPGVRIVLGGTTIHNTKSFLEEVLASGLHSRSRESSQATSRSANRR", "length": 570 }, "evidence": [ { "id": "A0A4X1SHS6", "url": "https://omabrowser.org/oma/group/A0A4X1SHS6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54GE3-1", "protein_name": "Vacuolar protein sorting-associated protein 45", "gene_name": "vps45", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSGKQMDVIASIQEYINKILTNIQGMKVLVLDKETAGIVSMVYTQSEILQKEVFLFEKIENTKEKMLHMKGVYFIRPTQENIQSICDELKDPKFNKYHLFFTNTISKVSLDEIAKADEQDVVSEIQEYFGDFFAVNPDTFTLNLPGMLTKKSPRWQGDVGRVVDGLFSSLLALKKKPVIRYSSNSDTTRYLAEKITERMNRDRDLFDFRRQGEPLLLILDRKDDPITPLLHQWTYQAMIHELLTINNNRVSLAKAPGIKDELKEVVLSLDHDIFYKENLYKNFGDLGASIKDLVDQFQDKMNTNQNIQTIDDMKKFIENYPNFQKFSTTVSKHVSLMDELNRLISLDNLMEVSEVQQELACNHDHNSIYNHVLEIVNDSKYTDRDKLVLVLLYSIRYEDGRVWELKEKLSSIGIPPKEIGLIDTLRGYAGASLREGDLLGTKNIFSFARSVVKRGLQGVSNIYTQHKPLLHDILDSILKNKLKETSYPYLSTTQSRERPQDVIIFMVGGITYEEALTVYTFNSLNTGVCRVVLGGTSILNREQFLEDLSSTQISNPSSSSGRR", "length": 563 }, "evidence": [ { "id": "A0A4X1SHS6", "url": "https://omabrowser.org/oma/group/A0A4X1SHS6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9NRW7-1", "protein_name": "Vacuolar protein sorting-associated protein 45", "gene_name": "VPS45", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNVVFAVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNREIMKHLKAICFLRPTKENVDYIIQELRRPKYTIYFIYFSNVISKSDVKSLAEADEQEVVAEVQEFYGDYIAVNPHLFSLNILGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSSEAAKRLAECVKQVITKEYELFEFRRTEVPPLLLILDRCDDAITPLLNQWTYQAMVHELLGINNNRIDLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSNIKNLMEDFQKKKPKEQQKLESIADMKAFVENYPQFKKMSGTVSKHVTVVGELSRLVSERNLLEVSEVEQELACQNDHSSALQNIKRLLQNPKVTEFDAARLVMLYALHYERHSSNSLPGLMMDLRNKGVSEKYRKLVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGRLKENLYPYLGPSTLRDRPQDIIVFVIGGATYEEALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEVLASGLHSRSKESSQVTSRSASRR", "length": 570 }, "evidence": [ { "id": "A0A4X1SHS6", "url": "https://omabrowser.org/oma/group/A0A4X1SHS6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VHB5-1", "protein_name": "Vacuolar protein sorting-associated protein 45", "gene_name": "Vps45", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNLISGIKLYIEKMCSESGPGMKIILLDKETTSIISMAFSQSDMLQREVYLFERLDSGRSNERLKYLKCIVFIRPTKQNIQLLANELRNPKYSAYYIYFSNIIPRTDIKYLAECDESESVREVKELYADYLCVNPNLFSLGIPNCMANLNWLPDALNRSMQGITAVLLSLKLNPVIRYRAGSQAAQLLAKLIYEQITKESSLFDFRSNMDGAAPPLLLVLDRRDDPVTPLLHQWTYQAMVHELLHIKNNRLDLSNCPNVPKDFKELVLSGDQDDFYGNNMYANYGEIGSTIKQLMEEFQRKANDHKKVESIADMKNFIESYPQFKKMSGTVQKHLCVIGELSALSNKRNLFEVSELEQEIACKAEHSAQLQRIKKLIADERVSIDDALKLVALYALRYERHANCDTSGLLQIIKTRGGRAAIVPSLIEYAGTHVRQGDLFNMVRITDAVKLTRNLIKGLKGVENVFTQHTPLLKETLEDVFKGRELDPLFPAINSELVPFRRPPQEVVVFIIGGATYEEALAVHQLNNAGYKVILGGTTIHNSQSFIQEVVAATSGIQFKHTKSMIKYCSTDNI", "length": 574 }, "evidence": [ { "id": "A0A4X1SHS6", "url": "https://omabrowser.org/oma/group/A0A4X1SHS6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SHS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHS6" } ], "pmid": "" }, { "name": "endosome membrane", "id": "GO:0010008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010008", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SHS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHS6" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SHS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHS6" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SHS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHS6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SHS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHS6" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SHS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHS6" } ], "pmid": "" }, { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SHS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHS6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 522, "end_pos": 524, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 522, "end_pos": 524 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1SHT7-1", "uniprot_ac": "A0A4X1SHT7", "uniprot_id": "A0A4X1SHT7_PIG", "mass": { "chemical_mass": 8799.0, "monoisotopic_mass": 8799.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1SHT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHT7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SHT7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHT7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHT7", "locus": {} } ], "crossref": [ { "id": "A0A4X1SHT7", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SHT7", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1SHT7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHT7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SHT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHT7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMLMSESVLPMFSSRSLMVSCRIFKSFSHLEFIFVHGVRVCSSFIALHAAVQVSQQCLLNRLSFSHFMFLPPLSKIN", "length": 77, "header": "tr|A0A4X1SHT7-1|A0A4X1SHT7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1SHT7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SHT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SHT7/entry#A0A4X1SHT7-1", "sequence": { "sequence": "MMLMSESVLPMFSSRSLMVSCRIFKSFSHLEFIFVHGVRVCSSFIALHAAVQVSQQCLLNRLSFSHFMFLPPLSKIN", "length": 77, "header": "tr|A0A4X1SHT7-1|A0A4X1SHT7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1SHT7-1" }, "locus": { "chromosome": "4", "start_pos": 100774614, "end_pos": 100774384, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077705.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077705.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070990.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070990.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to 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"glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NGDN", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIH2", "locus": {} } ], "crossref": [ { "id": "A0A4X1SIH2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SIH2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002020", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002020", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513213", "url": "https://www.ncbi.nlm.nih.gov/gene/100513213", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513213", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513213", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PVHYNET", "url": "https://omabrowser.org/oma/group/PVHYNET/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SIH2", "url": "https://www.orthodb.org/?gene=A0A4X1SIH2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13237", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13237", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13237:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13237:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04000", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04000", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231717", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231717", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1SIH2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SIH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIH2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS37", "url": "https://www.uniprot.org/uniprotkb/F1SS37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS37-1", "url": "https://www.uniprot.org/uniprotkb/F1SS37-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPEVLESDLPNAVALLKNLQEQVIAVTAQVQALTKKVQAKAFPTEKGLSLLEVKDQLLLMYLMDLSHLILHKASGGSLQGHAAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSENDPLRFKPHPSNMMSKLNSEDEEEDEAEEGQSGASGKKSGKAIAKKYVPPRLVPVHYDETEAEREKKRLERAKRRALSSSVIRELKEQYSDAPEEIRDARHPHVTRQSQEDQHRINYEESMMVRLSVSKREKGRRKRASIMSSQLHSLTHFSDISALTGGTPHLDEDQNLTKRRKKIPKKGRKKKGFRRRR", "length": 315, "header": "tr|A0A4X1SIH2-1|A0A4X1SIH2_PIG Isoform 1 of Neuroguidin OS=Sus scrofa OX=9823 GN=NGDN PE=3 SV=1 CANONICAL=A0A4X1SIH2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SIH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIH2/entry#A0A4X1SIH2-1", "sequence": { "sequence": "MAAPEVLESDLPNAVALLKNLQEQVIAVTAQVQALTKKVQAKAFPTEKGLSLLEVKDQLLLMYLMDLSHLILHKASGGSLQGHAAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSENDPLRFKPHPSNMMSKLNSEDEEEDEAEEGQSGASGKKSGKAIAKKYVPPRLVPVHYDETEAEREKKRLERAKRRALSSSVIRELKEQYSDAPEEIRDARHPHVTRQSQEDQHRINYEESMMVRLSVSKREKGRRKRASIMSSQLHSLTHFSDISALTGGTPHLDEDQNLTKRRKKIPKKGRKKKGFRRRR", "length": 315, "header": "tr|A0A4X1SIH2-1|A0A4X1SIH2_PIG Isoform 1 of Neuroguidin OS=Sus scrofa OX=9823 GN=NGDN PE=3 SV=1 CANONICAL=A0A4X1SIH2-1" }, "locus": { "chromosome": "7", "start_pos": 75629418, "end_pos": 75621492, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059165.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059165.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046650.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046650.2" } ] } }, { "isoform_ac": "F1SS37-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIH2/entry#F1SS37-1", "sequence": { "sequence": "MAAPEVLESDLPNAVALLKNLQEQVIAVTAQVQALTKKVQAKAFPTEKGLSLLEVKDQLLLMYLMDLSHLILHKASGGSLQGHAAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSENDPLRFKPHPSNMMSKLNSEDEEEDEAEEGQSGASGKKSGKAIAKKYVPPRLVPVHYDETEAEREKKRLERAKRRALSSSVIRELKEQYSDAPEEIRDARHPHVTRQSQEDQHRINYEESMMVRLSVSKREKGRRKRASIMSSQLHSLTHFSDISALTGGTPHLDEDQNLTKRRKKIPKKGRKKKGQ", "length": 311, "header": "tr|F1SS37-1|A0A4X1SIH2_PIG Computationally mapped isoform of Neuroguidin OS=Sus scrofa OX=9823 GN=NGDN PE=3 SV=2 CANONICAL=A0A4X1SIH2-1" }, "locus": { "chromosome": "7", "start_pos": 75629418, "end_pos": 75621957, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002259.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002259.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002207.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002207.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SS37", "url": "https://www.uniprot.org/uniprotkb/F1SS37" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513213", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513213", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LL94-1", "protein_name": "Neuroguidin", "gene_name": "Ngdn", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMLSWVSFRSPSSFRFARSRSMMLSWVSFRSPSSFRFARSRSMRTFFSCSRDPSSWQREEPAMNHKEVLESEVSSSITLLKNLQEQVMAVTAQVQALTAKVRAGAYSTEKGLSLLEVKDQLLLMYLMDLSHLILDKASGGSLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSENDPLRFKPHPSNMMSKLSSEDEEENEAEEDQSEASGKKSVKGASKKYVPPRLVPVHYDETEAEREQKRLEKAKRRALSSSVIRELKEQYSDAPEEIRDVRHPHVTRQSQEDQHRINYEESMMVRLSVSKREKGLRRRASAMSSQLHSLTHFSDISALTGGTAHLDEDQNPVKKRKKMPKKGRKKKGFRRRW", "length": 377 }, "evidence": [ { "id": "A0A4X1SIH2", "url": "https://omabrowser.org/oma/group/A0A4X1SIH2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HDG3-1", "protein_name": "Neuroguidin", "gene_name": "Ngdn", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAPEVPESDVSSSITLLKNLQEQVMAVTAQVQALTKKVQAGTYSTEKGLSFLEVKDQLLLMYLMDLSHLILDKASGGSLQGHPAVWRLVELRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSENDPLRFKPHPSNMISKLNSEDEEEDEAEEDQSEAAGKKSVKGTSKKYVPPRLVPVHYDETEAEREQKRLDRAKKRALSSSVIRELKEQYSDAPEEIRDSRHPHVTRQSQEDQHRINYEESMMVRLSVSKREKGRRKRASVMSSQLNSLTHFSDISALTGGAAHLDEDQNPIKKRKKIPKKGRKKKGFRRRR", "length": 315 }, "evidence": [ { "id": "A0A4X1SIH2", "url": "https://omabrowser.org/oma/group/A0A4X1SIH2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q2KII6-1", "protein_name": "Neuroguidin", "gene_name": "NGDN", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAPEVLESDLPNAVALLKNLQEQVMAVTAQVQTLTKKVQAKAYPTEKGLSLLEVKDQLLLMYLMDLSHLILDKASGGSLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSENDPLRFKPHPSNMMSKLSSEDEEEDEAEEGQSGASGKKSGKGTAKKYVPPRLVPVHYDETEAEREKKRLERAKRRALSSSVIRELKEQYSDAPEEIRDARHPHVTRQSQEDQHRINYEESMMVRLSVSKREKGRRKRANVMSSQLHSLTHFSDISALTGGTPHLDEDQNPTKKRKKIPKKGRKKKGFRRRR", "length": 315 }, "evidence": [ { "id": "A0A4X1SIH2", "url": "https://omabrowser.org/oma/group/A0A4X1SIH2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8NEJ9-1", "protein_name": "Neuroguidin", "gene_name": "NGDN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAALGVLESDLPSAVTLLKNLQEQVMAVTAQVKSLTQKVQAGAYPTEKGLSFLEVKDQLLLMYLMDLTHLILDKASGGSLQGHDAVLRLVEIRTVLEKLRPLDQKLKYQIDKLIKTAVTGSLSENDPLRFKPHPSNMMSKLSSEDEEEDEAEDDQSEASGKKSVKGVSKKYVPPRLVPVHYDETEAEREKKRLERAKRRALSSSVIRELKEQYSDAPEEIRDARHPHVTRQSQEDQHRINYEESMMVRLSVSKREKGRRKRANVMSSQLHSLTHFSDISALTGGTVHLDEDQNPIKKRKKIPQKGRKKKGFRRRR", "length": 315 }, "evidence": [ { "id": "A0A4X1SIH2", "url": "https://omabrowser.org/oma/group/A0A4X1SIH2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DB96-1", "protein_name": "Neuroguidin", "gene_name": "Ngdn", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAPEVLESDVSSSITLLKNLQEQVMAVTAQIQALTTKVRAGTYSTEKGLSFLEVKDQLLLMYLMDLSHLILDKASGASLQGHPAVLRLVEIRTVLEKLRPLDQKLKYQIDKLVKTAVTGSLSENDPLRFKPHPSNMVSKLSSEDEEESEAEEGQSEASGKKSAKGSAKKYVPPRLVPVHYDETEAEREQKRLEKAKRRALSSSVIRELKEQYSDAPEEIRDARHPHVTRQSQEDQHRVNYEESMMVRLSVSKREKGLRRRASAMSSQLHSLTHFSDISALTGGTAHLDEDQNPVKKRKKLPKKGRKKKGFRRRW", "length": 315 }, "evidence": [ { "id": "A0A4X1SIH2", "url": "https://omabrowser.org/oma/group/A0A4X1SIH2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VMM7-1", "protein_name": "Neuroguidin", "gene_name": "Dmel\\CG11030", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MVQALDYDCEAQGQDIPQAIQLLGEMNSNVKQVTDLVEGMLQRVKRGELTTEYGLSFLEVKYHMLLDYLINLTYVVLRKCSGETIEGDPSIERLIEIRTVLEKIRPIDHKLRYQIDKLVKTATTGVSSSTDPILYKPNPDDMMSSAGGAGRDEDDGEDDSDEEDEDDDEEDEDEAGAAKMPRKAATAGKSGVYVPPRIKPVYYDGDERDADKEKKALDRAKKRAITSSMLQDLKEEYLDAPTEISSGSRAQQMLSQAQKEKQEYEETYLMRLPVTKAEKHRQRKLTTLGTLGDEILGEISRESALRGDGSKKRKLAKKGKGKKRGGKKRKFH", "length": 332 }, "evidence": [ { "id": "A0A4X1SIH2", "url": "https://omabrowser.org/oma/group/A0A4X1SIH2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SIH2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIH2" } ], "pmid": "" }, { "name": "filopodium", "id": "GO:0030175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030175", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SIH2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIH2" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SIH2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIH2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000462", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SIH2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIH2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 293, "end_pos": 295 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1SIJ9-1", "uniprot_ac": "A0A4X1SIJ9", "uniprot_id": "A0A4X1SIJ9_PIG", "mass": { "chemical_mass": 22497.0, "monoisotopic_mass": 22497.0 }, "refseq": {}, "gene_names": [ { "name": "TEX51", "type": "recommended", "evidence": [ { "id": "A0A4X1SIJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIJ9" } ] } ], "protein_names": [ { "name": "Testis expressed 51", "type": "synonym", "evidence": [ { "id": "A0A4X1SIJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIJ9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SIJ9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIJ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TEX51", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIJ9", "locus": {} } ], "crossref": [ { "id": "A0A4X1SIJ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SIJ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1SIJ9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SIJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAZ6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDL0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDL0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLLLLSCILPPANGKSCLHCWPELPPLIDYDLQILWGTPGPPAELSQSLHALFLDTQASPESWYLGQDHMEEAAGKLFTHIDQAIKKFQDDKSRLLEEVRVLKQQFSQQLEEKSEKLKEKDISSTLEVINCANCKTHFLTCQDPTLCPVRDRRTFVWAVILALALPLAVLAGGGCYIFWLKKKEAEKQGHSRPLVTFN", "length": 199, "header": "tr|A0A4X1SIJ9-1|A0A4X1SIJ9_PIG Isoform 1 of Testis expressed 51 OS=Sus scrofa OX=9823 GN=TEX51 PE=4 SV=1 CANONICAL=A0A4X1SIJ9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SIJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIJ9/entry#A0A4X1SIJ9-1", "sequence": { "sequence": "MLLLLLSCILPPANGKSCLHCWPELPPLIDYDLQILWGTPGPPAELSQSLHALFLDTQASPESWYLGQDHMEEAAGKLFTHIDQAIKKFQDDKSRLLEEVRVLKQQFSQQLEEKSEKLKEKDISSTLEVINCANCKTHFLTCQDPTLCPVRDRRTFVWAVILALALPLAVLAGGGCYIFWLKKKEAEKQGHSRPLVTFN", "length": 199, "header": "tr|A0A4X1SIJ9-1|A0A4X1SIJ9_PIG Isoform 1 of Testis expressed 51 OS=Sus scrofa OX=9823 GN=TEX51 PE=4 SV=1 CANONICAL=A0A4X1SIJ9-1" }, "locus": { "chromosome": "15", "start_pos": 25471636, "end_pos": 25468422, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075022.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075022.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069852.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069852.1" } ] } }, { "isoform_ac": "A0A8W4FAZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SIJ9/entry#A0A8W4FAZ6-1", "sequence": { "sequence": 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"url": "https://www.ensembl.org/id/ENSSSCG00000001620" } ] } } ], "crossref": [ { "id": "A0A4X1SJK1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SJK1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100152701", "url": "https://www.ncbi.nlm.nih.gov/gene/100152701", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026134", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026134", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152701", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152701", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MPQGNDP", "url": "https://omabrowser.org/oma/group/MPQGNDP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SJK1", "url": "https://www.orthodb.org/?gene=A0A4X1SJK1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8D1FIL7", "url": "https://www.orthodb.org/?gene=A0A8D1FIL7", 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"https://www.uniprot.org/uniprotkb/A0A8D1FIL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1FIL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FIL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQVSGQRPPHCDAPHGAPSAAPDPAQTTSLLPGLEVVTGPAHPAEAALEEGSLEEAAPPMPQGNGPGIPQALDSTDLDVPIEAVTRQPQGNPLGCTPLVANGSGHPSELGGARRTGNGALGGPKVHRKLQTHPSLASQGSKKSKGSTKSAASQIPLQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECCGLCFSS", "length": 246, "header": "tr|A0A4X1SJK1-1|A0A4X1SJK1_PIG Isoform 1 of MyoD family inhibitor OS=Sus scrofa OX=9823 GN=MDFI PE=3 SV=1 CANONICAL=A0A4X1SJK1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SJK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJK1/entry#A0A4X1SJK1-1", "sequence": { "sequence": "MSQVSGQRPPHCDAPHGAPSAAPDPAQTTSLLPGLEVVTGPAHPAEAALEEGSLEEAAPPMPQGNGPGIPQALDSTDLDVPIEAVTRQPQGNPLGCTPLVANGSGHPSELGGARRTGNGALGGPKVHRKLQTHPSLASQGSKKSKGSTKSAASQIPLQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECCGLCFSS", "length": 246, "header": "tr|A0A4X1SJK1-1|A0A4X1SJK1_PIG Isoform 1 of MyoD family inhibitor OS=Sus scrofa OX=9823 GN=MDFI PE=3 SV=1 CANONICAL=A0A4X1SJK1-1" }, "locus": { "chromosome": "7", "start_pos": 36846228, "end_pos": 36830826, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001801.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001801.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001755.2", "url": "https://www.ensembl.org/id/ENSSSCP00000001755.2" } ] } }, { "isoform_ac": "A0A8D1FIL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJK1/entry#A0A8D1FIL7-1", "sequence": { "sequence": "MSQVSGQRPPHCDAPHGAPSAAPDPGQPQGNPLGCTPLVANGSGHPSELGGARRTGNGALGGPKVHRKLQTHPSLASQGSKKSKGSTKSAASQIPLQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECCGLCFSS", "length": 185, "header": "tr|A0A8D1FIL7-1|A0A4X1SJK1_PIG Computationally mapped isoform of MyoD family inhibitor OS=Sus scrofa OX=9823 GN=MDFI PE=3 SV=1 CANONICAL=A0A4X1SJK1-1" }, "locus": { "chromosome": "7", "start_pos": 36846228, "end_pos": 36830826, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037770.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037770.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050512.1", "url": "https://www.ensembl.org/id/ENSSSCP00000050512.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1FIL7", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FIL7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152701", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152701", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M3C7-1", "protein_name": "MyoD family inhibitor", "gene_name": "MDFI", "tax_id": 9913, "organism": "Bos 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"https://omabrowser.org/oma/group/A0A4X1SJK1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q99750-1", "protein_name": "MyoD family inhibitor", "gene_name": "MDFI", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MYQVSGQRPSGCDAPYGAPSAAPGPAQTLSLLPGLEVVTGSTHPAEAAPEEGSLEEAATPMPQGNGPGIPQGLDSTDLDVPTEAVTCQPQGNPLGCTPLLPNDSGHPSELGGTRRAGNGALGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECCGLCFSS", "length": 246 }, "evidence": [ { "id": "A0A4X1SJK1", "url": "https://omabrowser.org/oma/group/A0A4X1SJK1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "maintenance of protein location in cell", "id": "GO:0032507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032507", "evidence": [ { "database": "UniProtKB", "id": 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[ { "database": "UniProtKB", "id": "A0A4X1SJK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJK1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SJK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJK1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SJK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJK1" } ], "pmid": "" }, { "name": "protein sequestering activity", "id": "GO:0140311", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140311", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SJK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJK1" } ], "pmid": "" } ] } ] }, 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Involved in the assembly of the distal region of complex I.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SJU6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJU6#function" }, { "database": "UniProtKB", "id": "ARBA00057777", "url": "https://www.uniprot.org/uniprotkb/ARBA00057777#function" }, { "database": "UniProtKB", "id": "A0A4X1SKX5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SKX5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SJU6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJU6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DMAC2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJU6", "locus": { "chromosome": "6", "start_pos": 49403350, "end_pos": 49410238, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032711", "url": "https://www.ensembl.org/id/ENSSSCG00000032711" } ] } } ], "crossref": [ { "id": "100738209", "url": "https://www.ncbi.nlm.nih.gov/gene/100738209", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100738209", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738209", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GFRFAGQ", "url": "https://omabrowser.org/oma/group/GFRFAGQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SJU6", "url": "https://www.orthodb.org/?gene=A0A4X1SJU6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SKX5", "url": "https://www.orthodb.org/?gene=A0A4X1SKX5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SJU6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SJU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SKX5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SKX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SKX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SKX5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQGLDNLLALKELQSLSLQRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRDPASSPVPA", "length": 255, "header": "tr|A0A4X1SJU6-1|A0A4X1SJU6_PIG Isoform 1 of Distal membrane-arm assembly complex protein 2 OS=Sus scrofa OX=9823 GN=DMAC2 PE=3 SV=1 CANONICAL=A0A4X1SJU6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SJU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJU6/entry#A0A4X1SJU6-1", "sequence": { "sequence": "MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQGLDNLLALKELQSLSLQRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRDPASSPVPA", "length": 255, "header": "tr|A0A4X1SJU6-1|A0A4X1SJU6_PIG Isoform 1 of Distal membrane-arm assembly complex protein 2 OS=Sus scrofa OX=9823 GN=DMAC2 PE=3 SV=1 CANONICAL=A0A4X1SJU6-1" }, "locus": { "chromosome": "6", "start_pos": 49410212, "end_pos": 49405708, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077562.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077562.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068152.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068152.1" } ] } }, { "isoform_ac": "A0A4X1SKX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJU6/entry#A0A4X1SKX5-1", "sequence": { "sequence": "MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKVHRKNRFQDNEWIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQGLDNLLALKELQSLSLQRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRDPASSPVPA", "length": 228, "header": "tr|A0A4X1SKX5-1|A0A4X1SKX5_PIG Computationally mapped isoform of Distal membrane-arm assembly complex protein 2 OS=Sus scrofa OX=9823 GN=DMAC2 PE=3 SV=1 CANONICAL=A0A4X1SJU6-1" }, "locus": { "chromosome": "6", "start_pos": 49410212, "end_pos": 49405708, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059806.2", "url": "https://www.ensembl.org/id/ENSSSCT00000059806.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048790.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048790.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SJU6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SJU6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738209", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738209", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XZC5-1", "protein_name": "Distal membrane-arm assembly complex protein 2", "gene_name": "DMAC2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAALAIRGLRGGRIPPPPHPTGPLRGAASGALQRLGEWFYEVEVVLGWAERLRRRRLRRKNAHYSFIQSLHGHNVAAACFAMSCGGRVRFEGQQRWLCADSRGRWSPEVLQFHHVPVVAVDLSGSQLTYDGLDNFVLLTKLQHLDLSGCPHVDDWALGRLHVFGDSLQELSVARCPRVTERGLATLHQLPKLRCLDVGGLAVQSPGLLRILLEEMLPQCRVLGMEMEEGDPPEAPPELGQPPPLCDSAVIGGRVVPKWH", "length": 260 }, "evidence": [ { "id": "A0A4X1SJU6", "url": "https://omabrowser.org/oma/group/A0A4X1SJU6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A6QNS9-1", "protein_name": "Distal membrane-arm assembly complex protein 2", "gene_name": "DMAC2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAPRASLRLVAPVWNRGTSGIRGLSKAVDPEGSQKKGRTLLQFLTDHFYDVEAVREYLLRKQVLKVQKKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFRDREWMRANEQGLSSLEFRKLQEVPVEAVDASGCAINYQGLDNLLALKELQSLSLRRCPHVDDWCLGRLYQLADSLQELSLAGCPRISERGLACLHHLQNLRRLDISDLPAVSNPGLTQILVEEMLPHCEVLGADWAQGLKVGPEEQSRDAASSPIPAWPSAPPHQARSLPGCAERPTAHPSGSVGLTQLGGSGWGEGRRA", "length": 301 }, "evidence": [ { "id": "A0A4X1SJU6", "url": "https://omabrowser.org/oma/group/A0A4X1SJU6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5I0I4-1", "protein_name": "Distal membrane-arm assembly complex protein 2", "gene_name": "Dmac2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAPRAFLHLGAREWHGRARGTHSMSGLATPDSNREKKRTLLQFLSDHFHDVQTLREYLLQKQISKVSMENRSYRKIQERYGPYITGAQFILKQGGAVKFQGRDWIRPNDRGHSIAELQKVPVEAVDASGCAINYQGLSNLLPLKELQFLSLQRCPNLDDWCLSRLYLLAGSLQELSLAGCPRISERGLACLHHLQNLRRLDISDLPAVSHPGLTQILVEEMLPHCEVLGVDWAKSLKLGPDDQPPDTSSPLSS", "length": 254 }, "evidence": [ { "id": "A0A4X1SJU6", "url": "https://omabrowser.org/oma/group/A0A4X1SJU6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9D7K5-1", "protein_name": "Distal membrane-arm assembly complex protein 2", "gene_name": "Dmac2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAPRAVLHLGAREWNGRARRIHGMSELVTPDSSREKKRTLLQFLSDHFQDIQTLREYLLQKQISKVNRENRSFTNIQEKYGPYVAGAVFILKQGGAVKFQDKEEWIRPNNRSHFLAEIQKFQNVPVEAVDASGCAINYQGLSNLLPLKELRSLSLQRCPNLDDWCLSRLYLLAGSLQELSLAGCPRISERGLACLHHLQNLRRLDISDLPAVSHPGLTQILVEEMLPHCEVLGADWAQNLKLEPDKQPPDTSTPLSS", "length": 258 }, "evidence": [ { "id": "A0A4X1SJU6", "url": "https://omabrowser.org/oma/group/A0A4X1SJU6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NW81-1", "protein_name": "Distal membrane-arm assembly complex protein 2", "gene_name": "DMAC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLLQREMYKVHEKNRSYTWLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCDINYEGLDNLLRLKELQSLSLQRCCHVDDWCLSRLYPLADSLQELSLAGCPRISERGLACLHHLQNLRRLDISDLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGLKSGPEEQPRDTASPVPA", "length": 257 }, "evidence": [ { "id": "A0A4X1SJU6", "url": "https://omabrowser.org/oma/group/A0A4X1SJU6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "R4GEM5-1", "protein_name": "Distal membrane-arm assembly complex protein 2", "gene_name": "dmac2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAPLVRHAMRRCLAHNCAVTVRRGLRSGATPSVFTRLLLKLDHYFYDVESFLYLKEWWKTKVVKFQNKYFGYVQKRYGAQIGAAYYILAIKGSFRFAGQSQWFRPDSTGMFSFMRSPHGQIEEVDLSGTLINLNGLGNLISQNKLKTLSLRGCPEVDDWFLARLHVFRDSLVELDLSDCTHVTVGGLAALQNLRKLKRLDISGLPRLQCPGLVRILLEEMLPHCQVIGVESEQGMIQPERQEPTDIDDASTQSGLRRS", "length": 259 }, "evidence": [ { "id": "A0A4X1SJU6", "url": 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"A0A4X1TTG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3L2", "url": "https://www.uniprot.org/uniprotkb/F1S3L2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3L2-1", "url": "https://www.uniprot.org/uniprotkb/F1S3L2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGDFLTKLSMSAQTSPAEKGLNPGLLCQESYTCSGTDEAVFECDECCSLQCLRCEEELHRQERLRNHERIRLKAGHVPYCDPCKGPNGHSPGMKQRAVVRCQTCKINLCLECQKRTHSGGSKRRHPVTVYHVAKVQELLEDEGMDEETKRKKMTEKVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHLKVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPAQESCTVGVWAAYDPVHKVAVIDTEGLLGATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTARCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEVPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPTDFSGLRRALEQQLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGAGCKNSMNHGKEGVPHEAKSRCRYSHQYDNRVFTCKACYERGNEVSVVPKTAASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQADDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSVKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL", "length": 787, "header": "tr|A0A4X1TTG3-1|A0A4X1TTG3_PIG Isoform 1 of Zinc finger FYVE domain-containing protein 1 OS=Sus scrofa OX=9823 GN=ZFYVE1 PE=1 SV=1 CANONICAL=A0A4X1TTG3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TNL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3/entry#A0A4X1TNL4-1", "sequence": { "sequence": "MVGDFLTKLSMSAQTSPAEKGLNPGLLCQESYTCSGTDEAVFECDECCSLQCLRCEEELHRQERLRNHERIRLKAGHVPYCDPCKGPNGHSPGMKQRAVVRCQTCKINLCLECQKRTHSGGSKRRHPVTVYHVAKVQELLEDEGMDEETKRKKMTEKVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHLKVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPAQESCTVGVWAAYDPVHKVAVIDTEGLLGATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTARCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEVPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPTDFSGLRRALEQQLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQADDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSVKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL", "length": 718, "header": "tr|A0A4X1TNL4-1|A0A4X1TNL4_PIG Computationally mapped isoform of Zinc finger FYVE domain-containing protein 1 OS=Sus scrofa OX=9823 GN=ZFYVE1 PE=1 SV=1 CANONICAL=A0A4X1TTG3-1" }, "locus": { "chromosome": "7", "start_pos": 96378157, "end_pos": 96324694, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066304.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066304.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038144.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038144.2" } ] } }, { "isoform_ac": "A0A4X1TTG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3/entry#A0A4X1TTG3-1", "sequence": { "sequence": "MVGDFLTKLSMSAQTSPAEKGLNPGLLCQESYTCSGTDEAVFECDECCSLQCLRCEEELHRQERLRNHERIRLKAGHVPYCDPCKGPNGHSPGMKQRAVVRCQTCKINLCLECQKRTHSGGSKRRHPVTVYHVAKVQELLEDEGMDEETKRKKMTEKVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHLKVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPAQESCTVGVWAAYDPVHKVAVIDTEGLLGATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTARCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEVPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPTDFSGLRRALEQQLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGAGCKNSMNHGKEGVPHEAKSRCRYSHQYDNRVFTCKACYERGNEVSVVPKTAASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQADDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSVKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL", "length": 787, "header": "tr|A0A4X1TTG3-1|A0A4X1TTG3_PIG Isoform 1 of Zinc finger FYVE domain-containing protein 1 OS=Sus scrofa OX=9823 GN=ZFYVE1 PE=1 SV=1 CANONICAL=A0A4X1TTG3-1" }, "locus": { "chromosome": "7", "start_pos": 96378157, "end_pos": 96324694, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048408.1", "url": "https://www.ensembl.org/id/ENSSSCT00000048408.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049293.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049293.1" } ] } }, { "isoform_ac": "F1S3L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3/entry#F1S3L2-1", "sequence": { "sequence": "MVGDFLTKLSMSAQTSPAEKGLNPGLLCQESYTCSGTDEAVFECDECCSLQCLRCEEELHRQERLRNHERIRLKAGHVPYCDPCKGPNGHSPGMKQRAVVRCQTCKINLCLECQKRTHSGGSKRRHPVTVYHVAKVQELLEDEGMDEETKRKKMTEKVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHLKVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPAQESCTVGVWAAYDPVHKVAVIDTEGLLGATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTARCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEVPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPTDFSGLRRALEQQLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGAGCKNSMNHGKEGVPHEAKSRCRYSHQYDNRVFTCKACYERGNEVSVVPKTAASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQADDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSVKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPAGIPMSVMTGKRLLCV", "length": 800, "header": "tr|F1S3L2-1|A0A4X1TTG3_PIG Computationally mapped isoform of Zinc finger FYVE domain-containing protein 1 OS=Sus scrofa OX=9823 GN=ZFYVE1 PE=1 SV=4 CANONICAL=A0A4X1TTG3-1" }, "locus": { "chromosome": "7", "start_pos": 96378157, "end_pos": 96323527, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002600.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002600.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002535.5", "url": "https://www.ensembl.org/id/ENSSSCP00000002535.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S3L2", "url": "https://www.uniprot.org/uniprotkb/F1S3L2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154908", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154908", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZGY1-1", "protein_name": "Zinc finger FYVE domain-containing protein 1", "gene_name": "ZFYVE1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAHTQTAEKGQNTALLCQESYVCSGTDEAVFECDECWSLQCQRCEEELHQPERLRNHERTRIRPGHVPYCDSCKGANGNIMHASMTGSRQIAAVRCQVCKINLCVECQKRTHAGGNRRKHPVTVYHAGKAQEQEEEEMDEETRRRKMAEKVVSFLLVDETEEIQVRNEEDFIKKLDCSPDQHLKVVSIFGNTGDGKSHTLNHAFFYGREVFKTSPAQESCTVGVWAAYDPVRKVVVIDTEGLLGATVNLSQRTRLLLKVLAISDLVIYRTRADRLHNDLFKFLGDASEAYLKHFTKELKATTARCGLDVPLSTLGPGVIIFHETVYTKLLGSDHPSEVPEKLIQDRFRKLSCFPEAFSSIHYKGTRTYNPPTDFSGLRRAVEQQLENNTTRSPRQPGVIYKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSVCLSCGCGCKKSMNHTKEGVPHESKSRCRYSHQYDNRVYTCKACYERGMEVSVVPKTSASTDSPWLGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVNTVVRTEIEHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCNTPFKDNDTKHHCRACGEGFCDGCSSKTRPVPERGWGPAPVRVCDNCYENRGIQLDVAELPSDEEGGTLIARKVGEAVQNTLGAVVTAMDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL", "length": 781 }, "evidence": [ { "id": "A0A4X1TTG3", "url": "https://omabrowser.org/oma/group/A0A4X1TTG3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A3T4-1", "protein_name": "Zinc finger FYVE domain-containing protein 1", "gene_name": "Zfyve1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAQTSLAEKGLNPGLMCQESYACSGTDEAVFECDECCSLQCLRCEEELHRQERLRNHERIRLKAGHVPYCDPCKGPNGHSPGVRQRAAVRCQTCKINLCLECQKRTHSGGNKRRHPVTVYHVSKVQESLEGEEMDEETKRRKMTERVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHLKVVSIFGNTGDGKSHTLNHTFFHGREVFKTSPAQESCTVGVWAAHDPVHKVAVIDTEGLLGATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTARCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEAPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGAGCKNSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGKEVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDAFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNQCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYDARNVQLDVAEAQADDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSVKLSKHHCRACGQGFCDECSHGRRAVPSRGWDHPVRVCFNCNKKPGDL", "length": 777 }, "evidence": [ { "id": "A0A4X1TTG3", "url": "https://omabrowser.org/oma/group/A0A4X1TTG3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BPK7-1", "protein_name": "Zinc finger FYVE domain-containing protein 1", "gene_name": "ZFYVE1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSAQTSPAEKGLNPGLLCQESYTCSGTDEAVFECDECCSLQCLRCEEELHRQERLRNHERIRLKAGHVPYCDPCKGPSGHSPGVKQRAVVRCQTCKINLCLECQKRTHSGGNKRRHPITVYHVTKVQELLEEEGMDEETKRKKMTEKVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHLKVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPAQESCTVGVWAAYDPVHKVAVIDTEGLLGATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTARCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEVPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPTDFSGLRRALEQQLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGAGCKNSMNHGKEGVPHEAKSRCRYSHQYDNRVFTCKACYERGNEVSVVPKTAASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNSQLDVTEAQGDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHSCRKEFSVKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPGDL", "length": 777 }, "evidence": [ { "id": "A0A4X1TTG3", "url": "https://omabrowser.org/oma/group/A0A4X1TTG3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q810J8-1", "protein_name": "Zinc finger FYVE domain-containing protein 1", "gene_name": "Zfyve1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAQTSLAEKGLNPGLMCQESYACSGTDEAIFECDECCSLQCLRCEEELHRQERLRNHERIRLKAGHVPYCDPCKGPNGHSPGVRQRAAVRCQTCKINLCLECQKRTHSGGNKRRHPITVYLVSKVQESLEGEEMDEETKRKKMTERVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHLKVVSIFGNTGDGKSHTLNHTFFYGREVFKTSPAQESCTVGVWAAYDPVHKVAVIDTEGLLGATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATTARCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEAPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGAGCKNSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGKEVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDAFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNQCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDSCYDARNVQLDVTEAQADDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSVKLSKHHCRACGQGFCDECSHDCRAVPSRGWDHPVRVCFNCNKKPGDL", "length": 777 }, "evidence": [ { "id": "A0A4X1TTG3", "url": "https://omabrowser.org/oma/group/A0A4X1TTG3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "host-mediated activation of viral genome replication", "id": "GO:0044829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "macroautophagy", "id": "GO:0016236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016236", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "cellular response to starvation", "id": "GO:0009267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009267", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "lipid droplet formation", "id": "GO:0140042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140042", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "phosphatidylinositol-3,4,5-trisphosphate binding", "id": "GO:0005547", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005547", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "phosphatidylinositol-3,4-bisphosphate binding", "id": "GO:0043325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043325", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "1-phosphatidylinositol binding", "id": "GO:0005545", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005545", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "phosphatidylinositol-3-phosphate binding", "id": "GO:0032266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032266", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 10, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "lipid droplet", "id": "GO:0005811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005811", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "mitochondria-associated endoplasmic reticulum membrane contact site", "id": "GO:0044233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044233", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "autophagosome", "id": "GO:0005776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005776", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "Golgi stack", "id": "GO:0005795", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005795", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "phagophore assembly site", "id": "GO:0000407", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000407", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "extrinsic component of omegasome membrane", "id": "GO:0097629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097629", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TTG3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTG3" } ], "pmid": "" }, { "name": "endoplasmic 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"MHKKHLQEIPDQSSNVTTSFTWGWDSSKTSELLSGMGVSALEKEEVDSENIPQELLSNLGHPQSPPRKRLKSKGNEKDFVIVRRPKLNRENFPGVSWDSLPDELLLGIFSCLCLPELLKVSSVCKRWYHLAFDESLWQTLDLTGRNLHPDVTGRLLSRGVVAFRCPRSFMDQPLVEHFSPFRVQHMDLSNSVIDVSTLHGLLSQCSKLQNLSLEGLRLSDPIVNNLAQNTNLVRLNLSGCSGFSESALKTLLSSCSRLDELNLSWCYDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDVSTLVGRCPNLVHLDLSDSVMLKNDCFQEFYQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRLTLQKPSCL", "length": 424, "header": "tr|A0A4X1T9Q5-1|A0A4X1T9Q5_PIG Isoform 1 of S-phase kinase-associated protein 2 OS=Sus scrofa OX=9823 GN=SKP2 PE=4 SV=1 CANONICAL=A0A4X1T9Q5-1" }, "locus": { "chromosome": "16", "start_pos": 21500803, "end_pos": 21463697, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081046.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081046.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061963.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061963.1" } ] } }, { "isoform_ac": "A0A5G2QQI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5/entry#A0A5G2QQI0-1", "sequence": { "sequence": "MHAFKTPEPADAMHRKHLQEIPDQSSNVTTSFTWGWDSSKTSELLSGMGVSALEKEEVDSENIPQELLSNLGHPQSPPRKRLKSKGNEKDFVIVRRPKLNRENFPDVSTLVGRCPNLVHLDLSDSVMLKNDCFQEFYQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRLTLQKPSCL", "length": 229, "header": "tr|A0A5G2QQI0-1|A0A4X1T9Q5_PIG Computationally mapped isoform of S-phase kinase-associated protein 2 OS=Sus scrofa OX=9823 GN=SKP2 PE=4 SV=2 CANONICAL=A0A4X1T9Q5-1" }, "locus": { "chromosome": "16", "start_pos": 21500803, "end_pos": 21463242, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090589.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090589.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066987.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066987.2" } ] } }, { "isoform_ac": "A0A5G2RIX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5/entry#A0A5G2RIX7-1", "sequence": { "sequence": "MHRKHLQEIPDQSSNVTTSFTWGWDSSKTSELLSGMGVSALEKEEVDSENIPQELLSNLGHPQSPPRKRLKSKGNEKDFVIVRRPKLNRENFPGVSWDSLPDELLLGIFSCLCLPELLKVSSVCKRWYHLAFDESLWQTLDLTGRNLHPDVTGRLLSRGVVAFRCPRSFMDQPLVEHFSNLAQNTNLVRLNLSGCSGFSESALKTLLSSCSRLDELNLSWCYDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDVSTLVGRCPNLVHLDLSDSVMLKNDCFQEFYQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRLTLQKPSCL", "length": 379, "header": "tr|A0A5G2RIX7-1|A0A4X1T9Q5_PIG Computationally mapped isoform of S-phase kinase-associated protein 2 OS=Sus scrofa OX=9823 GN=SKP2 PE=4 SV=2 CANONICAL=A0A4X1T9Q5-1" }, "locus": { "chromosome": "16", "start_pos": 21500803, "end_pos": 21463278, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067576.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067576.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071639.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071639.2" } ] } }, { "isoform_ac": "A0A8W4FHJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5/entry#A0A8W4FHJ2-1", "sequence": { "sequence": "MHAFKTPEPADAMHRKHLQEIPDQSSNVTTSFTWGWDSSKTSELLSGMGVSALEKEEVDSENIPQELLSNLGHPQSPPRKRLKSKGNEKDFVIVRRPKLNRENFPGVSWDSLPDELLLGIFSCLCLPELLKVSSVCKRWYHLAFDESLWQTLDLTGRNLHPDVTGRLLSRGVVAFRCPRSFMDQPLVEHFSPFRVQHMDLSNSVIDVSTLHGLLSQCSKLQNLSLEGLRLSDPIVNNLAQNTNLVRLNLSGCSGFSESALKTLLSSCSRLDELNLSWCYDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDVSTLVGRCPNLVHLDLSDSVMLKNDCFQEFYQLNYLQHLSLSRCYDIIPETLLIQQKKNANLTFLVTFEPKANQSQQ", "length": 390, "header": "tr|A0A8W4FHJ2-1|A0A4X1T9Q5_PIG Computationally mapped isoform of S-phase kinase-associated protein 2 OS=Sus scrofa OX=9823 GN=SKP2 PE=4 SV=1 CANONICAL=A0A4X1T9Q5-1" }, "locus": { "chromosome": "16", "start_pos": 21509307, "end_pos": 21463242, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097271.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097271.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078707.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078707.1" } ] } }, { "isoform_ac": "A0A8W4FM66-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5/entry#A0A8W4FM66-1", "sequence": { "sequence": "MHAFKTPEPADAMHRKHLQEIPDQSSNVTTSFTWGWDSSKTSELLSGMGVSALEKEEVDSENIPQELLSNLGHPQSPPRKRLKSKGNEKDFVIVRRPKLNRENFPGVSWDSLPDELLLGIFSCLCLPELLKVSSVCKRWYHLAFDESLWQTLDLTGRNLHPDVTGRLLSRGVVAFRCPRSFMDQPLVEHFSPFRVQHMDLSNSVIDVSTLHGLLSQCSKLQNLSLEGLRLSDPIVNNLAQNTNLVRLNLSGCSGFSESALKTLLSSCSRLDELNLSWCYDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDVSTLVGRCPNLVHLDLSDSVMLKNDCFQEFYQLNYLQHLSLSRCYDIIPETLLTQKSL", "length": 371, "header": "tr|A0A8W4FM66-1|A0A4X1T9Q5_PIG Computationally mapped isoform of S-phase kinase-associated protein 2 OS=Sus scrofa OX=9823 GN=SKP2 PE=4 SV=1 CANONICAL=A0A4X1T9Q5-1" }, "locus": { "chromosome": "16", "start_pos": 21496206, "end_pos": 21463242, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106493.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106493.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080292.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080292.1" } ] } }, { "isoform_ac": "A0A8W4FMG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5/entry#A0A8W4FMG5-1", "sequence": { "sequence": "MDQPLVEHFSPFRVQHMDLSNSVIDVSTLHGLLSQCSKLQNLSLEGLRLSDPIVNNLAQNTNLVRLNLSGCSGFSESALKTLLSSCSRLDELNLSWCYDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDVSTLVGRCPNLVHLDLSDSVMLKNDCFQEFYQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRLTLQKPSCL", "length": 255, "header": "tr|A0A8W4FMG5-1|A0A4X1T9Q5_PIG Computationally mapped isoform of S-phase kinase-associated protein 2 OS=Sus scrofa OX=9823 GN=SKP2 PE=4 SV=1 CANONICAL=A0A4X1T9Q5-1" }, "locus": { "chromosome": "16", "start_pos": 21500803, "end_pos": 21480573, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106329.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106329.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080541.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080541.1" } ] } }, { "isoform_ac": "F6Q6U7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5/entry#F6Q6U7-1", "sequence": { "sequence": "MHAFKTPEPADAMHRKHLQEIPDQSSNVTTSFTWGWDSSKTSELLSGMGVSALEKEEVDSENIPQELLSNLGHPQSPPRKRLKSKGNEKDFVIVRRPKLNRENFPGVSWDSLPDELLLGIFSCLCLPELLKVSSVCKRWYHLAFDESLWQTLDLTGRNLHPDVTGRLLSRGVVAFRCPRSFMDQPLVEHFSPFRVQHMDLSNSVIDVSTLHGLLSQCSKLQNLSLEGLRLSDPIVNNLAQNTNLVRLNLSGCSGFSESALKTLLSSCSRLDELNLSWCYDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDVSTLVGRCPNLVHLDLSDSVMLKNDCFQEFYQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRLTLQKPSCL", "length": 436, "header": "tr|F6Q6U7-1|A0A4X1T9Q5_PIG Computationally mapped isoform of S-phase kinase-associated protein 2 OS=Sus scrofa OX=9823 GN=SKP2 PE=4 SV=1 CANONICAL=A0A4X1T9Q5-1" }, "locus": { "chromosome": "16", "start_pos": 21500803, "end_pos": 21463242, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018330.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018330.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017834.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017834.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F6Q6U7", "url": "https://www.uniprot.org/uniprotkb/F6Q6U7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-174178", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "resource": "Reactome", "description": "APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1" }, { "id": "R-SSC-187577", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-187577", "resource": "Reactome", "description": "SCF(Skp2)-mediated degradation of p27/p21" }, { "id": "R-SSC-5689880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "resource": "Reactome", "description": "Ub-specific processing proteases" }, { "id": "R-SSC-68949", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68949", "resource": "Reactome", "description": "Orc1 removal from chromatin" }, { "id": "R-SSC-69231", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69231", "resource": "Reactome", "description": "Cyclin D associated events in G1" }, { "id": "R-SSC-8939902", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939902", "resource": "Reactome", "description": "Regulation of RUNX2 expression and activity" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-9708530", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9708530", "resource": "Reactome", "description": "Regulation of BACH1 activity" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HJU6-1", "protein_name": "S-phase kinase-associated protein 2", "gene_name": "Skp2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MHRKHLQEIPDQSSNVTTSFTWGWDSSKTSELLSGMGVSALEKEEVDSENIPHELLSNLGHPQSPPRKRLKSKGSEKDFVIIRRPKLNRENFPGVSWDSLPDELLLGIFSCLCLPELLRVSGVCKRWYRLSLDESLWQSLDLAGKNLHPDVTVRLLSRGVIAFRCPRSFMEQPLGESFSSFRVQHMDLSNSVINVSNLLGILSECSKLQNLSLEGLQLSDPIVNTLSKNENLVRLNLCGCSGFSESAVATLLSSCCRLDELNLSWCFEFTEKHVQAAVAHLSASITQLNLSGYRKNLQKTDLCTLIKRCPNLVRLDLSDSIMLKNDCFPEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDATLQLLREALPHLQINCAYFTTIARPTMDNKKNPEIWGIKCRLTLQKPSCV", "length": 424 }, "evidence": [ { "id": "A0A4X1T9Q5", "url": "https://omabrowser.org/oma/group/A0A4X1T9Q5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q13309-1", "protein_name": "S-phase kinase-associated protein 2", "gene_name": "SKP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MHRKHLQEIPDLSSNVATSFTWGWDSSKTSELLSGMGVSALEKEEPDSENIPQELLSNLGHPESPPRKRLKSKGSDKDFVIVRRPKLNRENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGIKCRLTLQKPSCL", "length": 424 }, "evidence": [ { "id": "A0A4X1T9Q5", "url": "https://omabrowser.org/oma/group/A0A4X1T9Q5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z0Z3-1", "protein_name": "S-phase kinase-associated protein 2", "gene_name": "Skp2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRKHLQEIPDQSGNVTTSFTWGWDSSKTSELLSGMGVSALEKEEVDSENIPHGLLSNLGHPQSPPRKRVKGKGSDKDFVIIRRPKLSRENFPGVSWDSLPDELLLGIFSCLCLPELLRVSGVCKRWYRLSLDESLWQSLDLAGKNLHPDVTVRLLSRGVVAFRCPRSFMEQPLGESFSSFRVQHMDLSNSVINVSNLHKILSECSKLQNLSLEGLQLSDPIVKTLAQNENLVRLNLCGCSGFSESAVATLLSSCSRLDELNLSWCFDFTEKHVQAAVAHLPNTITQLNLSGYRKNLQKTDLCTIIKRCPNLIRLDLSDSIMLKNDCFPEFFQLNYLQHLSLSRCYDIIPDTLLELGEIPTLKTLQVFGIVPEGTLQLLREALPRLQINCAYFTTIARPTMDSKKNLEIWGIKCRLTLQKPSCL", "length": 424 }, "evidence": [ { "id": "A0A4X1T9Q5", "url": "https://omabrowser.org/oma/group/A0A4X1T9Q5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" }, { "name": "SCF ubiquitin ligase complex", "id": "GO:0019005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019005", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" }, { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" }, { "name": "defense response to virus", "id": "GO:0051607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051607", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" }, { "name": "G1/S transition of mitotic cell cycle", "id": "GO:0000082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000082", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" }, { "name": "protein K48-linked ubiquitination", "id": "GO:0070936", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070936", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" }, { "name": "protein K63-linked ubiquitination", "id": "GO:0070534", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070534", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" }, { "name": "positive regulation of double-strand break repair via homologous recombination", "id": "GO:1905168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905168", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" }, { "name": "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0031146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031146", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 289, "end_pos": 291, "annotation": "n_glycosylation_sequon" }, { "start_pos": 389, "end_pos": 391, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1T9Q5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9Q5" }, { "id": "PS50181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 94, "end_pos": 140, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 15, "end_pos": 17 }, { "start_pos": 210, "end_pos": 212 }, { "start_pos": 236, "end_pos": 238 }, { "start_pos": 262, "end_pos": 264 }, { "start_pos": 289, "end_pos": 291 }, { "start_pos": 389, "end_pos": 391 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1THH2-1", "uniprot_ac": "A0A4X1THH2", "uniprot_id": "A0A4X1THH2_PIG", "mass": { "chemical_mass": 46286.0, "monoisotopic_mass": 46286.0 }, "refseq": { "ac": "XP_005667986", "name": "BRO1 domain-containing protein BROX", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667986" }, "gene_names": [ { "name": "BROX", "type": "recommended", "evidence": [ { "id": "A0A4X1THH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2" } ] }, { "name": "BROX", "type": "synonym", "evidence": [ { "id": "XP_005667986", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667986" } ] } ], "protein_names": [ { "name": "BRO1 domain-containing protein BROX", "type": "recommended", "evidence": [ { "id": "A0A4X1THH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2/entry#names_and_taxonomy" } ] }, { "name": "BRO1 domain- and CAAX motif-containing protein", "type": "synonym", "evidence": [ { "id": "A0A4X1THH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2/entry#names_and_taxonomy" } ] }, { "name": "BRO1 domain-containing protein BROX", "type": "synonym", "evidence": [ { "id": "XP_005667986", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667986" } ] } ], "function": [ { "annotation": "Nuclear envelope-associated factor that is involved in the nuclear envelope ruptures during interphase (NERDI) repair, where it is locally recruited by CHMP5 and reduces cytoskeletal stress through its action on SYN2 to help reseal the ruptured membrane.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RK25", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RK25#function" }, { "database": "UniProtKB", "id": "ARBA00058649", "url": "https://www.uniprot.org/uniprotkb/ARBA00058649#function" }, { "database": "UniProtKB", "id": "A0A4X1THH2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2#function" }, { "database": "UniProtKB", "id": "A0A5G2Q777", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q777#function" }, { "database": "UniProtKB", "id": "F1S9G9", "url": "https://www.uniprot.org/uniprotkb/F1S9G9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1THH2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BROX", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2", "locus": { "chromosome": "10", "start_pos": 11486974, "end_pos": 11466004, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010836", "url": "https://www.ensembl.org/id/ENSSSCG00000010836" } ] } } ], "crossref": [ { "id": "A0A4X1THH2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1THH2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010836", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010836", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09243", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09243", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "106504096", "url": "https://www.ncbi.nlm.nih.gov/gene/106504096", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004328", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004328", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106504096", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504096", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YNYCGEN", "url": "https://omabrowser.org/oma/group/YNYCGEN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1THH2", "url": "https://www.orthodb.org/?gene=A0A4X1THH2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23032", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23032", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23032:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23032:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03097", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03097", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005667986", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667986", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1THH2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1THH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TLX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TLX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLX6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q777", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q777", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q777-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q777-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RK25", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RK25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RK25-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RK25-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1IBJ9", "url": "https://www.uniprot.org/uniprotkb/A0A8D1IBJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1IBJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1IBJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7L9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7L9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7L9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7L9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9G9", "url": "https://www.uniprot.org/uniprotkb/F1S9G9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9G9-1", "url": "https://www.uniprot.org/uniprotkb/F1S9G9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTHWFHRNPLKATAPVSFNYYGVITGPAASKICSDLRSSRARLLELFTDLSCNPEMMKSAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHIAKLITPAEKGRDLEARLLEAYIIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGQTLLASDKCGEAIRSLQEAEKFYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGTLVKNTLEKCQRENGFIYFQKVPTEAPQLELKANYGLVEPVPFEFPPLSSHWTPEAMAAFDLTQRPKDDRGKPKPEEVVKPVKEPDIKPQKDTGCSVS", "length": 411, "header": "tr|A0A4X1THH2-1|A0A4X1THH2_PIG Isoform 1 of BRO1 domain-containing protein BROX OS=Sus scrofa OX=9823 GN=BROX PE=3 SV=1 CANONICAL=A0A4X1THH2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1THH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2/entry#A0A4X1THH2-1", "sequence": { "sequence": "MTHWFHRNPLKATAPVSFNYYGVITGPAASKICSDLRSSRARLLELFTDLSCNPEMMKSAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHIAKLITPAEKGRDLEARLLEAYIIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGQTLLASDKCGEAIRSLQEAEKFYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGTLVKNTLEKCQRENGFIYFQKVPTEAPQLELKANYGLVEPVPFEFPPLSSHWTPEAMAAFDLTQRPKDDRGKPKPEEVVKPVKEPDIKPQKDTGCSVS", "length": 411, "header": "tr|A0A4X1THH2-1|A0A4X1THH2_PIG Isoform 1 of BRO1 domain-containing protein BROX OS=Sus scrofa OX=9823 GN=BROX PE=3 SV=1 CANONICAL=A0A4X1THH2-1" }, "locus": { "chromosome": "10", "start_pos": 11484876, "end_pos": 11469840, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044579.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044579.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041405.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041405.1" } ] } }, { "isoform_ac": "A0A4X1TLX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2/entry#A0A4X1TLX6-1", "sequence": { "sequence": "MTHWFHRNPLKATAPVSFNYYGVITGPAASKICSDLRSSRARLLELFTDLSCNPEMMKSAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHIAKLITPAEKGRDLEARLLEAYIIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGQTLLASDKCGEAIRSLQEAEKFYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGTLVKNTLEKCQRENGFMANPSRKKW", "length": 338, "header": "tr|A0A4X1TLX6-1|A0A4X1TLX6_PIG Computationally mapped isoform of BRO1 domain-containing protein BROX OS=Sus scrofa OX=9823 GN=BROX PE=3 SV=1 CANONICAL=A0A4X1THH2-1" }, "locus": { "chromosome": "10", "start_pos": 11484817, "end_pos": 11469840, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082515.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082515.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068312.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068312.1" } ] } }, { "isoform_ac": "A0A5G2Q777-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2/entry#A0A5G2Q777-1", "sequence": { "sequence": "MTHWFHRNPLKATAPVSFNYYGVITGPAASKICSDLRSSRARLLELFTDLSCNPEMMKSAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHIAKLITPAEKGRDLEARLLEAYIIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGQTLLASDKCGEAIRSLQEAEKFYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGTLVKNTLEKCQRENGFIYFQKVPTEAPQLELKANYGLVEPVPFEFPPLSSHWTPEAMAAFDLTQRPKDDSGKPKPEEVVKPVKEPDIKPQKDTGCSVS", "length": 411, "header": "tr|A0A5G2Q777-1|A0A4X1THH2_PIG Computationally mapped isoform of BRO1 domain-containing protein BROX OS=Sus scrofa OX=9823 GN=BROX PE=3 SV=1 CANONICAL=A0A4X1THH2-1" }, "locus": { "chromosome": "10", "start_pos": 11484876, "end_pos": 11469840, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076712.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076712.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059635.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059635.1" } ] } }, { "isoform_ac": "A0A5G2RK25-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2/entry#A0A5G2RK25-1", "sequence": { "sequence": "MTHWFHRNPLKATAPVSFNYYGVITGPAASKICSDLRSSRARLLELFTDLSCNPEMMKSAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHIAKLITPAEKGRDLEARLLEAYIIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGQTLLASDKCGEAIRSLQEAEKFYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGTLVKNTLEKCQRENGFIYFQKVPTEAPQLELKANYGLVEPVPFEFPPLSSHWTPEAMAAFDLTQRPKDDRPEEVVKPVKEPDIKPQKDTGCSVS", "length": 407, "header": "tr|A0A5G2RK25-1|A0A4X1THH2_PIG Computationally mapped isoform of BRO1 domain-containing protein BROX OS=Sus scrofa OX=9823 GN=BROX PE=3 SV=2 CANONICAL=A0A4X1THH2-1" }, "locus": { "chromosome": "10", "start_pos": 11484876, "end_pos": 11469840, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076020.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076020.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072360.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072360.2" } ] } }, { "isoform_ac": "A0A8D1IBJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2/entry#A0A8D1IBJ9-1", "sequence": { "sequence": "MTHWFHRNPLKATAPVSFNYYGVITGPAASKICSDLRSSRARLLELFTDLSCNPEMMKSAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSITEDEAKEVHRSLKIAAGIFKHLKESHIAKLITPAEKGRDLEARLLEAYIIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGQTLLASDKCGEAIRSLQEAEKFYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGTLVKNTLEKCQRENGFIYFQKVPTEAPQLELKANYGLVEPVPFEFPPLSSHWTPEAMAAFDLTQRPKDDRGKPKPEEVVKPVKEPDIKPQKDTGCSVS", "length": 379, "header": "tr|A0A8D1IBJ9-1|A0A4X1THH2_PIG Computationally mapped isoform of BRO1 domain-containing protein BROX OS=Sus scrofa OX=9823 GN=BROX PE=3 SV=1 CANONICAL=A0A4X1THH2-1" }, "locus": { "chromosome": "10", "start_pos": 11484876, "end_pos": 11469840, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056725.2", "url": "https://www.ensembl.org/id/ENSSSCT00000056725.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040942.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040942.2" } ] } }, { "isoform_ac": "A0A8W4F7L9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2/entry#A0A8W4F7L9-1", "sequence": { "sequence": "MTHWFHRNPLKATAPVSFNYYGVITGPAASKICRLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHIAKLITPAEKGRDLEARLLEAYIIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGQTLLASDKCGEAIRSLQEAEKFYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGTLVKNTLEKCQRENGFIYFQKVPTEAPQLELKANYGLVEPVPFEFPPLSSHWTPEAMAAFDLTQRPKDDRGKPKPEEVVKPVKEPDIKPQKDTGCSVS", "length": 371, "header": "tr|A0A8W4F7L9-1|A0A4X1THH2_PIG Computationally mapped isoform of BRO1 domain-containing protein BROX OS=Sus scrofa OX=9823 GN=BROX PE=3 SV=1 CANONICAL=A0A4X1THH2-1" }, "locus": { "chromosome": "10", "start_pos": 11484876, "end_pos": 11469840, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097663.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097663.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075234.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075234.1" } ] } }, { "isoform_ac": "F1S9G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2/entry#F1S9G9-1", "sequence": { "sequence": "MLQKHLEKMTHWFHRNPLKATAPVSFNYYGVITGPAASKICSDLRSSRARLLELFTDLSCNPEMMKSAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHIAKLITPAEKGRDLEARLLEAYIIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGQTLLASDKCGEAIRSLQEAEKFYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGTLVKNTLEKCQRENGFIYFQKVPTEAPQLELKANYGLVEPVPFEFPPLSSHWTPEAMAAFDLTQRPKDDRGKPKPEEVVKPVKEPDIKPQKDTGCSVS", "length": 419, "header": "tr|F1S9G9-1|F1S9G9_PIG Computationally mapped isoform of BRO1 domain-containing protein BROX OS=Sus scrofa OX=9823 GN=BROX PE=3 SV=3 CANONICAL=A0A4X1THH2-1" }, "locus": { "chromosome": "10", "start_pos": 11484876, "end_pos": 11469690, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011855.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011855.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011552.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011552.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 300, "start_aa": "Thr", "end_pos": 300, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr300", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q777", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q777" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106504096", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504096", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QPJ1-1", "protein_name": "BRO1 domain-containing protein BROX", "gene_name": "Brox", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTHWFHRNPLKATAPVSFNYYGMITGPAASKICNDLRSSRTRLLELFTDLSCNPETMKNAADLYFSLLQGFINSLGDSTQESKLRYVQSFKWTDTLQGHVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHIPKLLTPAEKGQDLEARLIDAYVIQCQAEAQEVTIARAIELQHAPGLIAALAYETASFYQRADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGQTLLASDKCGEAIRSLQEAEKLYTEAEALCKEYGETKGPGPTAKPSGHLFFRKLGSLVKNTLDKCQRENGFIYFQKIPTEAPQLELKANYGLVEPVPFEFPPMSAHWTPEALAAFDLTKRPKDDSVKPKPEEEVKPVKEPDIKPQKDTGCSVS", "length": 411 }, "evidence": [ { "id": "A0A4X1THH2", "url": "https://omabrowser.org/oma/group/A0A4X1THH2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9T5V2-1", "protein_name": "BRO1 domain-containing protein BROX", "gene_name": "BROX", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTHWFHRNPLKATAPVSFNYYGVVTGPAASKICSDLRSSRARLLELFTDLSCNPEMMKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSITEDEAKEVHRSLKIAAGIFKHLKESHIPKLITPAEKGRDLEARLIEAYIIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHALSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGQTLLASDKCGEAIRSLQEAEKFYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIYFQKVPTEAPQLELKANYGLVEPVPFEFPPPSAHWTPETLAAFDLTKRPKDDSAKPKPEEVVKPVKEPDIKPQKDTGCYIS", "length": 379 }, "evidence": [ { "id": "A0A4X1THH2", "url": "https://omabrowser.org/oma/group/A0A4X1THH2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A3KQV2-1", "protein_name": "BRO1 domain-containing protein BROX", "gene_name": "brox", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTHWFHRNPLKATAPVSFNLYGVASSPAANKICNDLRTARARLLDMFTDATCSPDTLKKSSDEYFALLQGFILPLDGTTQENKLRFIQNFKWTDTLQGNIASAQQDAVFELVSMAFNVALWYTKFASRLAGKENITEEEAKDVHKSLKIAAGIFKTLKETHIPRLITPAEKGRDLEPRVIDTYIVQSQAEAQEVTIARAIELKHNASLIAALAFETANFYQKADHTLNTLDPECSSKWKKYLQLKQHFYMAYAHCYHGQTLLAGDKCGEAIRSLQEAEKCYSRAEVLCKEYRQMKGPGSTAKPSEQLFFKKLGAVIKNTLEKCQRENGFIYFHKVPAEAPALELKASYGLAEPTAFELPPLSAQCTPEVYATFDLTRGHKDDKAKAKPEEEIKPVKEPDLKPQKDTGCVVC", "length": 411 }, "evidence": [ { "id": "A0A4X1THH2", "url": "https://omabrowser.org/oma/group/A0A4X1THH2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E1BY06-1", "protein_name": "BRO1 domain-containing protein BROX", "gene_name": "BROX", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTHWFHRNPLKATAPVQFNYYGVATTPASSKICNDLRLSRTRLLELFTDLSCNPEMMKNATDLYFSLLQGFILSLDDSSQECKLRYIQNFKWTDTLQGHVPCAQQDAVFELVSMGFNVALWYTKYASRLAGKEDITEDEAKDVHRSLKIAAGIFKHLKECHIPKLITPVEKGRDLEARLIDSYIIQCQAEAQEVTIARAIELKHNPGLIAALAYETANFYQKADQTLSSLDPTYAGKWRKYLNLKSCFYMAYAYCYHGQTLLASDKCGEAIRSLQESEKFFAKAEALCKEYGETKGPGTTAKPSGHLFFRKLGSLIKNTLEKCQRENGFIYFQKVPAEAPQLELKANYGLVEPVPFEFPALNAHWTPETLAAFDLTKRPKDDTAKPKPDEEVKPLKEPDIKPQKDSGCRIS", "length": 411 }, "evidence": [ { "id": "A0A4X1THH2", "url": "https://omabrowser.org/oma/group/A0A4X1THH2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q4V8K5-1", "protein_name": "BRO1 domain-containing protein BROX", "gene_name": "Brox", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTHWFHRNPLKATAPVSFNYYGMITGPPASKICNDLRSARTRLLELFTDLSCNPETMKNAADLYFSLLQGFINSVGDSTQESKLRYIQNFKWTDTLQGHVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHIPKLLTPAEKGRDLEARLIDAYIIQCQAEAQEVTIARAIELKHAPGLIAALAYETASFYQKADHTLSSLEPAHSAKWRKYLHLKMCFYTAYAYCYHGQTLLASDKCGEAIRSLQEAEKLYAEAEALCKEYGETKGPGPTAKPSGHLFFRKLGSLVKNTLDKCQRENGFIYFQKIPTEAPQLELKANYGLVEPVPFEFPPMSALWTPEALAAFDLTKRPKDDSIKPKPEEEVKPVKEPDIKPQKDTGCSVS", "length": 411 }, "evidence": [ { "id": "A0A4X1THH2", "url": "https://omabrowser.org/oma/group/A0A4X1THH2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5VW32-1", "protein_name": "BRO1 domain-containing protein BROX", "gene_name": "BROX", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTHWFHRNPLKATAPVSFNYYGVVTGPSASKICNDLRSSRARLLELFTDLSCNPEMMKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIYFQKIPTEAPQLELKANYGLVEPIPFEFPPTSVQWTPETLAAFDLTKRPKDDSTKPKPEEEVKPVKEPDIKPQKDTGCYIS", "length": 411 }, "evidence": [ { "id": "A0A4X1THH2", "url": "https://omabrowser.org/oma/group/A0A4X1THH2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K2Q7-1", "protein_name": "BRO1 domain-containing protein BROX", "gene_name": "Brox", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHWFHRNPLKATAPVSFNYYGMITGPPASKICNDLRSARTRLLELFTDLSCNPETMKNAADLYFSLLQGFINSVGDSTQESKLRYIQNFKWTDTLQGHVPSAQQDAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHIPKLLTPAEKGRDLEARLIDAYIIQCQAEAQEVTIARAIELKHAPGLIAALAYDTASFYQKADHTLSSLEPAHSAKWRKYLHLKMCFYTAYAYCYHGQTLLASDKCGEAIRSLQEAEKLYAEAEALCKEYGETKGPGPTAKPSGHLFFRKLGSLVKNTLDKCQRENGFIYFQKIPTEAPQLELKANYGLVEPVPFEFPPMSAHWTPEALAAFDLTKRPKDDSVKPKPEEDVKPVKEPDIRPQKDTGCSVS", "length": 411 }, "evidence": [ { "id": "A0A4X1THH2", "url": "https://omabrowser.org/oma/group/A0A4X1THH2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1THH2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitotic nuclear membrane reassembly", "id": "GO:0007084", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007084", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1THH2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1THH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1THH2" }, { "id": "PS51180", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51180" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BRO1", "eco_id": "ECO_0000259", "start_pos": 90, "end_pos": 411, "start_aa": "Phe", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 300 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 134, "end_pos": 136 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, 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} ] }, { "uniprot_canonical_ac": "A0A4X1T7Y3-1", "uniprot_ac": "A0A4X1T7Y3", "uniprot_id": "A0A4X1T7Y3_PIG", "mass": { "chemical_mass": 18926.0, "monoisotopic_mass": 18926.0 }, "refseq": { "ac": "XP_005669523", "name": "coiled-coil domain-containing protein 12", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669523" }, "gene_names": [ { "name": "CCDC12", "type": "recommended", "evidence": [ { "id": "A0A4X1T7Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T7Y3" } ] }, { "name": "CCDC12", "type": "synonym", "evidence": [ { "id": "XP_005669523", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669523" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 12", "type": "synonym", "evidence": [ { "id": "A0A4X1T7Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T7Y3/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 12", "type": "synonym", 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"https://www.uniprot.org/uniprotkb/A0A4X1ST39-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEK0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1QKC7", "url": "https://www.uniprot.org/uniprotkb/A0A8D1QKC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1QKC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1QKC7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRU1", "url": "https://www.uniprot.org/uniprotkb/F1RRU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRU1-1", "url": "https://www.uniprot.org/uniprotkb/F1RRU1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYRISQLMSTPVANSSGSEKEDTGELSPTCLFPSFVCDSQCGDSSLEFGSIDRLAGSHFTCRRSPRLLTNGYYIWTEDSFLCDKDGNITLSPSQTRVLYKENLVRIFRKKKRVRHPFSSLFSLSASESWLHGSIFQNVGSPPSEDIWLEGVRRLDTSLCNESEASLLPEVSFQAILLIACFIISACARWFLGGIIASVFTCSLVITTAYVVKSSFLSLAHYFKATAWTWFAKF", "length": 233, "header": "tr|A0A4X1ST39-1|A0A4X1ST39_PIG Isoform 1 of Transmembrane protein 71 OS=Sus scrofa OX=9823 GN=TMEM71 PE=4 SV=1 CANONICAL=A0A4X1ST39-1" }, "isoforms": [ { "isoform_ac": "A0A4X1ST39-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST39/entry#A0A4X1ST39-1", "sequence": { "sequence": "MYRISQLMSTPVANSSGSEKEDTGELSPTCLFPSFVCDSQCGDSSLEFGSIDRLAGSHFTCRRSPRLLTNGYYIWTEDSFLCDKDGNITLSPSQTRVLYKENLVRIFRKKKRVRHPFSSLFSLSASESWLHGSIFQNVGSPPSEDIWLEGVRRLDTSLCNESEASLLPEVSFQAILLIACFIISACARWFLGGIIASVFTCSLVITTAYVVKSSFLSLAHYFKATAWTWFAKF", "length": 233, "header": "tr|A0A4X1ST39-1|A0A4X1ST39_PIG Isoform 1 of Transmembrane protein 71 OS=Sus scrofa OX=9823 GN=TMEM71 PE=4 SV=1 CANONICAL=A0A4X1ST39-1" }, "locus": { "chromosome": "4", "start_pos": 8515303, "end_pos": 8487930, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068979.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068979.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060136.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060136.1" } ] } }, { "isoform_ac": "A0A5G2QEK0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST39/entry#A0A5G2QEK0-1", "sequence": { "sequence": "SVCASLSFADTDSSGSEKEDTGELSPTCLFPSFVCDSQCGDSSLEFGSIDRLAGSHFTCRRSPRLLTNGYYIWTEDSFLCDKDGNITLSPSQTRVLYKENLVRIFRKKKRVRHPFSSLFSLSASESWLHGSIFQNVGSPPSEDIWLEGVRRLDTSLCNESGGDFDSSLTDDWESEKPNAESVTTSSSHRTAQTPKENLHHPSPPSQLTASEHFQENVWDRSKASLLPEVSFQAILLIACFIISACARWFLGGIIASVFTCSLVITTAYVVKSSFLSLAHYFKATAWTW", "length": 288, "header": "tr|A0A5G2QEK0-1|A0A4X1ST39_PIG Computationally mapped isoform of Transmembrane protein 71 OS=Sus scrofa OX=9823 GN=TMEM71 PE=4 SV=1 CANONICAL=A0A4X1ST39-1" }, "locus": { "chromosome": "4", "start_pos": 8511935, "end_pos": 8489762, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083712.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083712.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062613.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062613.1" } ] } }, { "isoform_ac": "A0A8D1QKC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST39/entry#A0A8D1QKC7-1", "sequence": { "sequence": "TSSFSQDVSNISTDVNTSSNFVCDSQCGDSSLEFGSIDRLAGSHFTCRRSPRLLTNGYYIWTEDSFLCDKDGNITLSPSQTRVLYKENLVRIFRKKKRVRHPFSSLFSLSASESWLHGSIFQNVGSPPSEDIWLEGVRRLDTSLCNESGGDFDSSLTDDWESEKPNAESVTTSSSHRTAQTPKENLHHPSPPSQLTASEHFQENVWDRSKASLLPEVSFQAILLIACFIISACARWFLGGIIASVFTCSLVITTAYVVKSSFLSLAHYFKATAWTWFAKF", "length": 280, "header": "tr|A0A8D1QKC7-1|A0A4X1ST39_PIG Computationally mapped isoform of Transmembrane protein 71 OS=Sus scrofa OX=9823 GN=TMEM71 PE=4 SV=1 CANONICAL=A0A4X1ST39-1" }, "locus": { "chromosome": "4", "start_pos": 8515303, "end_pos": 8487911, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064408.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064408.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047497.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047497.1" } ] } }, { "isoform_ac": "F1RRU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST39/entry#F1RRU1-1", "sequence": { "sequence": "SVCASLSFADTDSSGSEKEDTGELSPTCLFPSFVCDSQCGDSSLEFGSIDRLAGSHFTCRRSPRLLTNGYYIWTEDSFLCDKDGNITLSPSQTRVLYKENLVRIFRKKKRVRHPFSSLFSLSASESWLHGSIFQNVGSPPSEDIWLEGVRRLDTSLCNESGGDFDSSLTDDWESEKPNAESVTTSSSHRTAQTPKENLHHPSPPSQLTASEHFQENVWDRSKASLLPEVSFQAILLIACFIISACARWFLGGIIASVFTCSLVITTAYVVKSSFLSLAHYFKATAWTWFAKF", "length": 292, "header": "tr|F1RRU1-1|A0A4X1ST39_PIG Computationally mapped isoform of Transmembrane protein 71 OS=Sus scrofa OX=9823 GN=TMEM71 PE=4 SV=4 CANONICAL=A0A4X1ST39-1" }, "locus": { "chromosome": "4", "start_pos": 8515303, "end_pos": 8489762, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006534.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006534.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006361.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006361.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEK0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEK0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ST39", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST39" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" }, { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 14, "end_pos": 16 }, { "start_pos": 160, "end_pos": 162 }, { "start_pos": 87, "end_pos": 89 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TJZ3-1", "uniprot_ac": "A0A4X1TJZ3", "uniprot_id": "A0A4X1TJZ3_PIG", "mass": { "chemical_mass": 38352.0, "monoisotopic_mass": 38352.0 }, "refseq": {}, "gene_names": [ { "name": "STOML1", "type": "recommended", "evidence": [ { "id": "A0A4X1TJZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3" } ] } ], "protein_names": [ { "name": "Stomatin-like protein 1", "type": "recommended", "evidence": [ { "id": "A0A4X1TJZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TJZ3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STOML1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3", "locus": { "chromosome": "7", "start_pos": 59461206, "end_pos": 59452176, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001913", "url": "https://www.ensembl.org/id/ENSSSCG00000001913" } ] } } ], "crossref": [ { "id": "A0A4X1TJZ3", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TJZ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001913", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001913", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13436", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13436", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001107", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001107", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001972", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001972", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003033", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003033", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036013", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036013", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10264", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10264", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10264:SF130", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10264:SF130", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01145", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01145", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1TJZ3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TJZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVW9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5I1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5I1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5I1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5I1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SID0", "url": "https://www.uniprot.org/uniprotkb/F1SID0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SID0-1", "url": "https://www.uniprot.org/uniprotkb/F1SID0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VPDAPQSWPSCLCHGFISFLGFLLLLITFPISGWFALKVVPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVELAVEAVLQPPQDSPTGPSLDSTLQQLALHFLGGGLSSVAGGAPLLGTDTLEMVSEVEPPASHAGAGSSPKQPVAEGLLMALKPFLSEALVSQVGACYQFNVILPGGTQSIYFLDLTTGQGRVGHGAPDGIPDVVVEMSEEDLQALLCRELRPLGAYMSGRLKVKGDLSVAMKLEAVLRALK", "length": 355, "header": "tr|A0A4X1TJZ3-1|A0A4X1TJZ3_PIG Isoform 1 of Stomatin-like protein 1 OS=Sus scrofa OX=9823 GN=STOML1 PE=3 SV=1 CANONICAL=A0A4X1TJZ3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TJZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3/entry#A0A4X1TJZ3-1", "sequence": { "sequence": "VPDAPQSWPSCLCHGFISFLGFLLLLITFPISGWFALKVVPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVELAVEAVLQPPQDSPTGPSLDSTLQQLALHFLGGGLSSVAGGAPLLGTDTLEMVSEVEPPASHAGAGSSPKQPVAEGLLMALKPFLSEALVSQVGACYQFNVILPGGTQSIYFLDLTTGQGRVGHGAPDGIPDVVVEMSEEDLQALLCRELRPLGAYMSGRLKVKGDLSVAMKLEAVLRALK", "length": 355, "header": "tr|A0A4X1TJZ3-1|A0A4X1TJZ3_PIG Isoform 1 of Stomatin-like protein 1 OS=Sus scrofa OX=9823 GN=STOML1 PE=3 SV=1 CANONICAL=A0A4X1TJZ3-1" }, "locus": { "chromosome": "7", "start_pos": 59460468, "end_pos": 59453533, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069839.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069839.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060843.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060843.1" } ] } }, { "isoform_ac": "A0A5G2QVW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3/entry#A0A5G2QVW9-1", "sequence": { "sequence": "MLGRSGYRALPLGDFDRFQQSSFGFLGSQKGCLSPERGSVGPGADAPQSWPSCLCHGFISFLGFLLLLITFPISGWFALKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVELAVEAVLQPPQDSPTGPSLDSTLQQLALHFLGGGLSSVAGGAPLLGTADTLEMVSEVEPPASHAGAGSSPKQPVAEGLLMALKPFLSEALVSQVGACYQFNVILPGGTQSIYFLDLTTGQGRVGHGAPDGIPDVVVEMSEEDLQALLCRELRPLGAYMSGRLKVKGDLSVAMKLEAVLRALK", "length": 348, "header": "tr|A0A5G2QVW9-1|A0A4X1TJZ3_PIG Computationally mapped isoform of Stomatin-like protein 1 OS=Sus scrofa OX=9823 GN=STOML1 PE=3 SV=1 CANONICAL=A0A4X1TJZ3-1" }, "locus": { "chromosome": "7", "start_pos": 59460468, "end_pos": 59452288, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082589.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082589.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069099.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069099.1" } ] } }, { "isoform_ac": "A0A5G2R5I1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3/entry#A0A5G2R5I1-1", "sequence": { "sequence": "MLGRSGYRALPLGDFDRFQQSSFGFLGSQKGCLSPERGSVGPGADAPQSWPSCLCHGFISFLGFLLLLITFPISGWFALKVVPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVELAVEAVLQPPQDSPTGPSLDSTLQQLALHFLGGGLSSVAGGAPLLGTGQGRVGHGAPDGIPDVVVEMSEEDLQALLCRELRPLGAYMSGRLKVKGDLSVAMKLEAVLRALK", "length": 327, "header": "tr|A0A5G2R5I1-1|A0A4X1TJZ3_PIG Computationally mapped isoform of Stomatin-like protein 1 OS=Sus scrofa OX=9823 GN=STOML1 PE=3 SV=2 CANONICAL=A0A4X1TJZ3-1" }, "locus": { "chromosome": "7", "start_pos": 59460468, "end_pos": 59452288, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087775.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087775.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069430.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069430.2" } ] } }, { "isoform_ac": "F1SID0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3/entry#F1SID0-1", "sequence": { "sequence": "MLGRSGYRALPLGDFDRFQQSSFGFLGSQKGCLSPERGSVGPGADAPQSWPSCLCHGFISFLGFLLLLITFPISGWFALKVVPTYERMIVFRLGRIRTPQGPGMVLLLPFIDSFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVELAVEAVLQPPQDSPTGPSLDSTLQQLALHFLGGGLSSVAGGAPLLGTDTLEMVSEVEPPASHAGAGSSPKQPVAEGLLMALKPFLSEALVSQVGACYQFNVILPGGTQSIYFLDLTTGAGGWDTGHLTASLTWWWRCPRRTCRPCCAGSCGPSGPT", "length": 372, "header": "tr|F1SID0-1|A0A4X1TJZ3_PIG Computationally mapped isoform of Stomatin-like protein 1 OS=Sus scrofa OX=9823 GN=STOML1 PE=3 SV=4 CANONICAL=A0A4X1TJZ3-1" }, "locus": { "chromosome": "7", "start_pos": 59460394, "end_pos": 59452288, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002142.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002142.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002092.5", "url": "https://www.ensembl.org/id/ENSSSCP00000002092.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVW9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TJZ3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3" } ], "pmid": "" }, { "name": "membrane raft", "id": "GO:0045121", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045121", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TJZ3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3" } ], "pmid": "" }, { "name": "late endosome membrane", "id": "GO:0031902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031902", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TJZ3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ion channel inhibitor activity", "id": "GO:0008200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008200", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TJZ3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid transport", "id": "GO:0006869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006869", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TJZ3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1TJZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJZ3" }, { "id": "SM00244", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00244" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Band 7", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 200, "start_aa": "Phe", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UBA4-1", "uniprot_ac": "A0A4X1UBA4", "uniprot_id": "A0A4X1UBA4_PIG", "mass": { "chemical_mass": 65368.0, "monoisotopic_mass": 65368.0 }, "refseq": { "ac": "XP_003132435", "name": "nuclear receptor subfamily 2 group C member 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132435" }, "gene_names": [ { "name": "NR2C2", "type": "recommended", "evidence": [ { "id": "A0A4X1UBA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4" } ] }, { "name": "NR2C2", "type": "synonym", "evidence": [ { "id": "XP_003132435", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132435" } ] } ], "protein_names": [ { "name": "Nuclear receptor subfamily 2 group C member 2", "type": "synonym", "evidence": [ { "id": "A0A4X1UBA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4/entry#names_and_taxonomy" } ] }, { "name": "nuclear receptor subfamily 2 group C member 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003132435", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132435" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBA4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NR2C2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4", "locus": { "chromosome": "13", "start_pos": 69464795, "end_pos": 69576946, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011594", "url": "https://www.ensembl.org/id/ENSSSCG00000011594" } ] } } ], "crossref": [ { "id": "A0A4X1UBA4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1UBA4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011594", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011594", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06952", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06952", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06967", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06967", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513111", "url": "https://www.ncbi.nlm.nih.gov/gene/100513111", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001628", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001628", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001723", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001723", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048246", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048246", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050274", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050274", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513111", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513111", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IHWARSI", "url": "https://omabrowser.org/oma/group/IHWARSI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1UBA4", "url": "https://www.orthodb.org/?gene=A0A4X1UBA4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24083", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24083", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00104", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00104", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00105", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00105", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-383280", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-383280", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9940951", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9940951", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003132435", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132435", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1UBA4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UBA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1Y473", "url": "https://www.uniprot.org/uniprotkb/A0A8D1Y473", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1Y473-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1Y473-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSPSPRIQIISTDSAVASPQRIQIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEMQPEDQSASEITRAFDTLAKALNTTDSSSPPSLADGIDGSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL", "length": 596, "header": "tr|A0A4X1UBA4-1|A0A4X1UBA4_PIG Isoform 1 of Nuclear receptor subfamily 2 group C member 2 OS=Sus scrofa OX=9823 GN=NR2C2 PE=3 SV=1 CANONICAL=A0A4X1UBA4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UBA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4/entry#A0A4X1UBA4-1", "sequence": { "sequence": "MTSPSPRIQIISTDSAVASPQRIQIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEMQPEDQSASEITRAFDTLAKALNTTDSSSPPSLADGIDGSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL", "length": 596, "header": "tr|A0A4X1UBA4-1|A0A4X1UBA4_PIG Isoform 1 of Nuclear receptor subfamily 2 group C member 2 OS=Sus scrofa OX=9823 GN=NR2C2 PE=3 SV=1 CANONICAL=A0A4X1UBA4-1" }, "locus": { "chromosome": "13", "start_pos": 69508749, "end_pos": 69470700, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012690.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012690.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012357.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012357.4" } ] } }, { "isoform_ac": "A0A5G2QXR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4/entry#A0A5G2QXR1-1", "sequence": { "sequence": "MATNMEGLVQHRVGTQQVAEVPRTQTSRPESPGMTSPSPRIQIISTDSAVASPQRIQIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEMQPEDQSASEITRAFDTLAKALNTTDSSSPPSLADGIDGSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRRGGWEYQESRG", "length": 583, "header": "tr|A0A5G2QXR1-1|A0A4X1UBA4_PIG Computationally mapped isoform of Nuclear receptor subfamily 2 group C member 2 OS=Sus scrofa OX=9823 GN=NR2C2 PE=3 SV=2 CANONICAL=A0A4X1UBA4-1" }, "locus": { "chromosome": "13", "start_pos": 69557803, "end_pos": 69474010, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067783.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067783.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068932.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068932.2" } ] } }, { "isoform_ac": "A0A8D1Y473-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4/entry#A0A8D1Y473-1", "sequence": { "sequence": "MDTSQVPRTQTSRPESPGMTSPSPRIQIISTDSAVASPQRIQIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEMQPEDQSASEITRAFDTLAKALNTTDSSSPPSLADGIDGSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL", "length": 614, "header": "tr|A0A8D1Y473-1|A0A4X1UBA4_PIG Computationally mapped isoform of Nuclear receptor subfamily 2 group C member 2 OS=Sus scrofa OX=9823 GN=NR2C2 PE=3 SV=1 CANONICAL=A0A4X1UBA4-1" }, "locus": { "chromosome": "13", "start_pos": 69545046, "end_pos": 69470700, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057618.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057618.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040860.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040860.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513111", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513111", "resource": "KEGG Pathway" }, { "id": "R-SSC-383280", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-383280", "resource": "Reactome", "description": "Nuclear Receptor transcription pathway" }, { "id": "R-SSC-9940951", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9940951", "resource": "Reactome", "description": "Interaction of NuRD complexes with transcription factors" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LZU3-1", "protein_name": "Nuclear receptor subfamily 2 group C member 2", "gene_name": "NR2C2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTSPSPRIQIISTDSAVASPQRIQIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVAEKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDCKAETSQGALGTLANVVTSLANLSGPLNNGDTAETQPEDQSASEITRAFDTLAKALNTTDSASPPSLADGIDGSGGGGIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMARLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL", "length": 596 }, "evidence": [ { "id": "A0A4X1UBA4", "url": "https://omabrowser.org/oma/group/A0A4X1UBA4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8C2QF65-1", "protein_name": "Nuclear receptor subfamily 2 group C member 2 isoform X1", "gene_name": "Nr2c2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MATNMEGLVQHRVGTQQVAEVPRTQTSRPESPGMTSPSPRIQIISTDSAVASPQRIQIVTDQQTGQKIQIVTAVDASGSSKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVVTSLANLNESLNNGDTSEMQPEDQSASEITRAFDTLAKALNTTDSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL", "length": 629 }, "evidence": [ { "id": "A0A4X1UBA4", "url": "https://omabrowser.org/oma/group/A0A4X1UBA4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AB32TYQ7-1", "protein_name": "Nuclear receptor subfamily 2 group C member 2 isoform X2", "gene_name": "nr2c2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSGSPQRIQIISTEPSVTSPQRIQIVTEQQTGQKIQIVTALDSSVPKQQFLLASPDGSPAGKVLLASPESSSAKQLIFATADSLVPGRIQFVTDAVSVERLLGKGTDLSRVQPIEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKSLTYSCRSNQDCVINKHHRNRCQFCRLRKCLEMGMKMESVQSERKPIDLPREKPANCAASTEKIYIRKDLRSPLIATPTFISEKDSSRSKLLDSGMLVNIQQPLIQADGTLLLATDKTESGQGDLGTLANVVTSLANLNDSLSNGEATDGQLEESPSEITRAFDTLAKALNPGELTESQSLSEVDGVGGATIQVISRDQISPLIEVEGPLLTDTHVSFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFLALGQECNTALVRACWNELFILGLAQCAQIMSLSTILTAIVNHLQSSIQDVDKLSSERIKLVMEHIWKLQEFCNSMAKLQTDAYEYAYLKAIVLFSPDHPGLSSCSQIEKFQEKAQMELQDYVQKTYPDETYRLARILLRLPALRLMSSSITEELFFTGLIGNVPIDSIIPYILKMETADYNSQITAPSV", "length": 593 }, "evidence": [ { "id": "A0A4X1UBA4", "url": "https://omabrowser.org/oma/group/A0A4X1UBA4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1P0B9-1", "protein_name": "Nuclear receptor subfamily 2 group C member 2", "gene_name": "NR2C2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTSPSQRIQIISTDSSVGSPQRIQIVTDQQTGQKIQIVTAVDSSVSPKQQFILASPDGTGAGKVILAAPETSNAKQLIFTTADNVVPGRIQIVTDSASVERLLGKADVQRAQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPTNCAASTEKIYIRKDLRSPLIATPTFVADKDGARSAGLLDPGMLVNIQQPLIRDDGTILLAADSKAETSQGALGTLANVVTSLANLSDSLNNGDTSEIQQEEQSASEISRAFDTLAKALSTTDGTAVPNLADGMDPTGGGNIHVISRDQSTPIIEVEGPLLTDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQECNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKIDIDGYEYAYLKAIVLFSPDHPGLNSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFTGLIGNVPIDSIIPYILKMETAEYNGQITGTSA", "length": 596 }, "evidence": [ { "id": "A0A4X1UBA4", "url": "https://omabrowser.org/oma/group/A0A4X1UBA4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P49116-1", "protein_name": "Nuclear receptor subfamily 2 group C member 2", "gene_name": "NR2C2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSPSPRIQIISTDSAVASPQRIQIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL", "length": 596 }, "evidence": [ { "id": "A0A4X1UBA4", "url": "https://omabrowser.org/oma/group/A0A4X1UBA4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P49117-1", "protein_name": "Nuclear receptor subfamily 2 group C member 2", "gene_name": "Nr2c2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSPSPRIQIISTDSAVASPQRIQIVTDQQTGQKIQIVTAVDASGSSKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLAADSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTTDSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL", "length": 596 }, "evidence": [ { "id": "A0A4X1UBA4", "url": "https://omabrowser.org/oma/group/A0A4X1UBA4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P55094-1", "protein_name": "Nuclear receptor subfamily 2 group C member 2", "gene_name": "Nr2c2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTSPSPRIQIISTDSAVRSPQRIQIVTDQQTGQKLQIVTAVDASGSSKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGSRQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDASEMQPEDQSASEITRAFDTLAKALNTTDSASPPSLADGIDASGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGHEYAYLKAIVLFSPDHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL", "length": 596 }, "evidence": [ { "id": "A0A4X1UBA4", "url": "https://omabrowser.org/oma/group/A0A4X1UBA4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBA4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBA4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBA4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBA4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4" } ], "pmid": "" }, { "name": "nuclear receptor activity", "id": "GO:0004879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004879", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBA4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBA4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBA4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBA4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBA4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4" } ], "pmid": "" }, { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBA4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBA4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBA4" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", 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"url": "https://www.ensembl.org/id/ENSSSCP00000060443.2" } ] } }, { "isoform_ac": "A0A5G2R4Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8W5/entry#A0A5G2R4Q6-1", "sequence": { "sequence": "MAHDLVMFRDVTVDFSQEEWECLNSNQRNLYRDVILENYSNLVSLVITLLEQGKEPWMVVRDEKRRWSLDLESRYDTKKLFQVKDICEMNLSQWEIMERIRSCGLEDSFFRKDCGYKNFEGQEAYFRQVKKTTSEKMTKNRKRTSLPLYQRIHNREKPYECGDCGKAFRVRQQLTFHQRIHTGEKPYECKDCGKAFRQCAHLSRHQRIHASDKLLECKRCGKIFTCGADLRVHQRIHIGEKPYVCKECGKAFRVRGQLNLHQRIHTGEKPYECKECGKTFRQYAHLTRHQRLNIAEKCYECKECGQAFLCSTGLRVHHKLHTGEKPYDCKECGKAFRVRQQLTLHQRIHTGEKPYDCKECGKTFSRAYHLTLHQRIHTGEKPYECKECQKFFRRYSELISHQGIHIGEKPYDCKECGKAFRLFSQLTQHQSIHFGEKPYKCKECEKTFRLLSQLTQHQSIHTGEKPYDCKECGKAFRLHSSLIQHQRIHSGEKPYKCKECKKAFRQHSHLTYHQRVHNVTKL", "length": 522, "header": "tr|A0A5G2R4Q6-1|A0A4X1T8W5_PIG Computationally mapped isoform of Zinc finger protein 30 homolog OS=Sus scrofa OX=9823 GN=ZFP30 PE=3 SV=1 CANONICAL=A0A4X1T8W5-1" }, "locus": { "chromosome": "6", "start_pos": 46780291, "end_pos": 46764313, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086823.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086823.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069170.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069170.1" } ] } }, { "isoform_ac": "A0A8D0NGK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8W5/entry#A0A8D0NGK3-1", "sequence": { "sequence": "MRPGIQSSTSWLLDLVMFRDVTVDFSQEEWECLNSNQRNLYRDVILENYSNLVSLGGCSISKPDVITLLEQGKEPWMVVRDEKRRWSLDLESRYDTKKLFQVKDICEMNLSQWEIMERIRSCGLEDSFFRKDCGYKNFEGQEAYFRQVKKTTSEKMTKNRKRTSLPLYQRIHNREKPYECGDCGKAFRVRQQLTFHQRIHTGEKPYECKDCGKAFRQCAHLSRHQRIHASDKLLECKRCGKIFTCGADLRVHQRIHIGEKPYVCKECGKAFRVRGQLNLHQRIHTGEKPYECKECGKTFRQYAHLTRHQRLNIAEKCYECKECGQAFLCSTGLRVHHKLHTGEKPYDCKECGKAFRVRQQLTLHQRIHTGEKPYDCKECGKTFSRAYHLTLHQRIHTGEKPYECKECQKFFRRYSELISHQGIHIGEKPYDCKECGKAFRLFSQLTQHQSIHFGEKPYKCKECEKTFRLLSQLTQHQSIHTGEKPYDCKECGKAFRLHSSLIQHQRIHSGEKPYKCKECKKAFRQHSHLTYHQRVHNVTKL", "length": 541, "header": "tr|A0A8D0NGK3-1|A0A4X1T8W5_PIG Computationally mapped isoform of Zinc finger protein 30 homolog OS=Sus scrofa OX=9823 GN=ZFP30 PE=3 SV=1 CANONICAL=A0A4X1T8W5-1" }, "locus": { "chromosome": "6", "start_pos": 46777706, "end_pos": 46764313, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054068.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054068.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042104.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042104.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4Q6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4Q6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100739425", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739425", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LY27-1", "protein_name": "Zinc finger protein 568", "gene_name": "Zfp568", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVSTLKYQQQLRGMERLSQMAGRRAWCSEDSALGQEEEDMSRPSKTVTFKDVAVDLTQEEWQQMKPAQRDLYRDVMLETYSNLVTVGCHVTKPDVIFKLEQEDEPWVLEEEMFWRRSPEAARGGMKSFLSKDMAKDLKFEDVVIYFSLEEWECLHHSHRNLYRAVMLDNYSNLLSLSLANMKPRVVSLLEQGKEPWMVMRNGTKVWCADWESKTETKNFLPKDSSKIKTSQQKMAKNCTRSSLEDSRARGNREVTCELESQQVHEERHLRQAVVPSVERPGSIQCTAHREAHPGGKPCRCEKCQKMLVRKAPPSEREQSHSKEKGSEYTQSGKVFNCTSDMAVHQRPQESRKGSESKKNAIPCGSDTPKPPGAQGSERPHKCKECGKAFQTPSQLSHHQKLHVGEKPFKCKECGKAFPSNAQLSLHQRVHTDEKCFECKECGKAFMRPSHLVRHQRIHTGEKPHKCKECGKAFRYDTQLSLHLLTHAGARRFECKDCDKVYSCASQLALHQMTHTGEKPHKCKECGKGFISDSHLLRHQSVHTGEKPYKCKECGKGFRRGSELARHQRAHSGDKPYKCKECGKSFTCTTELLRHQKVHTGDRPHKCKECGKAFIRRSELTHHERSHSGEKPYECKECGKTFGRGSELSRHQKIHTGEKPYKCKQCGKAFIRGSHLTQHQRTHTGQRNFQSIQDCKLLQNY", "length": 701 }, "evidence": [ { "id": "A0A4X1T8W5", "url": "https://omabrowser.org/oma/group/A0A4X1T8W5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q60585-1", "protein_name": "Zinc finger protein 30", "gene_name": "Zfp30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAHSTVMFRDVAVGFSQEEWECLSAYERDLYRDVMLENYSHLVSLAGCSISKPDVITLLEQGKEPWMIVRAEKRRWSRDLESRYSSNGLLPEKNTYEINLSPWEIMGRIQRRGPEDSLLGKDFEYKIYEEQENSHRVYFRHVIKTTSGKRPRYRKRTPVSLYQKTPNGEKPYECGECGKAFKVRQQLTFHQRIHTGEKPYECKECGKAFRQCAHLSRHQRIHASDKLYECKKCAKIFTCSSDLRGHQRSHVGEKPYDCKECGKAFRVRGQLMLHQRIHTGEKPYACTECGKSFRQVAHLTRHQRLNSGSSRHECKECGRAFLCSTGLRLHHKLHTGEKPYDCKECGKAFRVRQQLTLHERIHTGEKPFDCKECGKTFSRGYHLTLHQRIHTGEKPYECKECRKFFRRYSELISHQGIHIGEKPYDCKECGKAFRLFSQLTQHQSIHFGEKPYKCMECEKTFRLLSQLTQHQSIHTGEKPYDCKECGKAFRLHSSLIQHQRIHSGEKPYKCTECKKAFRQHSHLTYHQRIHKNL", "length": 533 }, "evidence": [ { "id": "A0A4X1T8W5", "url": "https://omabrowser.org/oma/group/A0A4X1T8W5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y2G7-1", "protein_name": "Zinc finger protein 30 homolog", "gene_name": "ZFP30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARDLVMFRDVAVDFSQEEWECLNSYQRNLYRDVILENYSNLVSLAGCSISKPDVITLLEQGKEPWMVVRDEKRRWTLDLESRYDTKKLFQGKDIYEMNLSQWKVMERIKSCGLEEQESPHEVCFRQVTKTTSEKMPTYRKLTSLPLYQKSHNREKPYECGECGKAFRVRQQLTFHQRIHTGEKPYECKECGKAFRQCAHLSRHQRIHTSDKLYECKKCGKIFTCGSDLRVHQRIHIGEKPYECKECGKAFRVRGQLNLHQRIHTGEKPYECKECGKAFRQYAHLTRHQRLNIAEKCYECKECGQAFLCSTGLRLHHKLHTGEKPYECKECGKAFRVRQQLTLHQRIHTGEKPYDCKECGKTFSRGYHLTLHQRIHTGEKPYECKECQKFFRRYSELISHQGIHIGEKPYECKECGKAFRLFSQLTQHQSIHFGEKPFKCKECEKTFRLLSQLTQHQSIHTGEKPYDCKECGKAFRLHSSLIQHQRIHSGEKPYKCKECKKAFRQHSHLTYHQRIHNVT", "length": 519 }, "evidence": [ { "id": "A0A4X1T8W5", "url": "https://omabrowser.org/oma/group/A0A4X1T8W5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T8W5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8W5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T8W5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8W5" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T8W5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8W5" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T8W5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8W5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T8W5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8W5" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T8W5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8W5" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T8W5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8W5" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T8W5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8W5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" }, { "start_pos": 527, "end_pos": 529, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1T8W5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8W5" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 168, "end_pos": 195, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1T8W5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8W5" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 78, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 38, "end_pos": 40 }, { "start_pos": 527, "end_pos": 529 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UAN1-1", "uniprot_ac": "A0A4X1UAN1", "uniprot_id": "A0A4X1UAN1_PIG", "mass": { "chemical_mass": 21370.0, "monoisotopic_mass": 21370.0 }, "refseq": {}, "gene_names": [ { "name": "KLRF1", "type": "recommended", "evidence": [ { "id": "A0A4X1UAN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAN1" } ] } ], "protein_names": [ { "name": "Killer cell lectin like receptor F1", "type": "synonym", "evidence": [ { "id": "A0A4X1UAN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAN1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UAN1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAN1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KLRF1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAN1", "locus": { "chromosome": "5", "start_pos": 62032574, "end_pos": 62043988, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000061792", "url": "https://www.ensembl.org/id/ENSSSCG00000061792" } ] } } ], "crossref": [ { "id": "A0A4X1UAN1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1UAN1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd03593", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03593", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100144592", "url": "https://www.ncbi.nlm.nih.gov/gene/100144592", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051379", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051379", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100144592", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100144592", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YWFSSEL", "url": "https://omabrowser.org/oma/group/YWFSSEL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SPC0", "url": "https://www.orthodb.org/?gene=F1SPC0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46746", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46746", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46746:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46746:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-198933", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1U5V0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5V0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U5V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5V0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U854", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U854", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U854-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U854-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UA46", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UA46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UA46-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UA46-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UAN1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UAN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAN1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPC0", "url": "https://www.uniprot.org/uniprotkb/F1SPC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPC0-1", "url": "https://www.uniprot.org/uniprotkb/F1SPC0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQDEERYMTLKVQFKKRNSVRTSQLKHQDCSVMLHWYKILLGISGTVNAILVLTLVTLILLGMCPSEWLKYQEKCYWFSNEMKSWSDSHGYCLRRKSHLLIIQDQLEMAFIQKAVKQSNYVWIGLNFTFQKRTWTWVDGSPLDSNIFLIKGPAKENSCATIKENRIYSETCSSVFKWICQY", "length": 181, "header": "tr|A0A4X1UAN1-1|A0A4X1UAN1_PIG Isoform 1 of Killer cell lectin like receptor F1 OS=Sus scrofa OX=9823 GN=KLRF1 PE=4 SV=1 CANONICAL=A0A4X1UAN1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1U5V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAN1/entry#A0A4X1U5V0-1", "sequence": { "sequence": "MQDEERYMTLKVQFKKRNSVRTSQLKHQDCSVMLHWYKILLGISGTVNAILVLTLVTLILLVSQEVLLKCQNGDNLNITQHDDIGNGEVNGDTRAKISHKDASHCVSGTTDHKGFYTESRKTIKLCVDWT", "length": 130, "header": "tr|A0A4X1U5V0-1|A0A4X1U5V0_PIG Computationally mapped isoform of Killer cell lectin like receptor F1 OS=Sus scrofa OX=9823 GN=KLRF1 PE=4 SV=1 CANONICAL=A0A4X1UAN1-1" }, "locus": { "chromosome": "5", "start_pos": 62043984, "end_pos": 62036372, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": 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"https://www.ensembl.org/id/ENSSSCP00000081112.1" } ] } }, { "isoform_ac": "A0A4X1UA46-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAN1/entry#A0A4X1UA46-1", "sequence": { "sequence": "MQDEERYMTLKVQFKKRNSVRTSQLKHQDCSVMLHWYKILLGISGTVNAILVLTLVTLILLDSS", "length": 64, "header": "tr|A0A4X1UA46-1|A0A4X1UA46_PIG Computationally mapped isoform of Killer cell lectin like receptor F1 OS=Sus scrofa OX=9823 GN=KLRF1 PE=4 SV=1 CANONICAL=A0A4X1UAN1-1" }, "locus": { "chromosome": "5", "start_pos": 62043984, "end_pos": 62033367, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095631.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095631.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077885.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077885.1" } ] } }, { "isoform_ac": "A0A4X1UAN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAN1/entry#A0A4X1UAN1-1", "sequence": { "sequence": "MQDEERYMTLKVQFKKRNSVRTSQLKHQDCSVMLHWYKILLGISGTVNAILVLTLVTLILLGMCPSEWLKYQEKCYWFSNEMKSWSDSHGYCLRRKSHLLIIQDQLEMAFIQKAVKQSNYVWIGLNFTFQKRTWTWVDGSPLDSNIFLIKGPAKENSCATIKENRIYSETCSSVFKWICQY", "length": 181, "header": "tr|A0A4X1UAN1-1|A0A4X1UAN1_PIG Isoform 1 of Killer cell lectin like receptor F1 OS=Sus scrofa OX=9823 GN=KLRF1 PE=4 SV=1 CANONICAL=A0A4X1UAN1-1" }, "locus": { "chromosome": "5", "start_pos": 62043984, "end_pos": 62033269, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105596.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105596.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077499.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077499.1" } ] } }, { "isoform_ac": "F1SPC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAN1/entry#F1SPC0-1", "sequence": { "sequence": "MQDEERYMTLKVQFKKRNSVRTSQLKHQDCSVMLHWYKILLGISGTVNAILVLTLVTLILLVSQEVLLKCQNGDNLNITQHDDIGNGEVNGDTRAKISHKDASHCVSGTTDHKGMCPSEWLKYQEKCYWFSNEMKSWSDSHGYCLRRKSHLLIIQDQLEMAFIQKAVKQSNYVWIGLNFTFQKRTWTWVDGSPLDSNIFLIKGPAKENSCATIKENRIYSETCSSVFKWICQY", "length": 233, "header": "tr|F1SPC0-1|A0A4X1UAN1_PIG Computationally mapped isoform of Killer cell lectin like receptor F1 OS=Sus scrofa OX=9823 GN=KLRF1 PE=4 SV=1 CANONICAL=A0A4X1UAN1-1" }, "locus": { "chromosome": "5", "start_pos": 62043984, "end_pos": 62033269, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106748.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106748.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076420.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076420.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SPC0", "url": "https://www.uniprot.org/uniprotkb/F1SPC0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100144592", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100144592", "resource": "KEGG Pathway" }, { "id": "R-SSC-198933", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "resource": "Reactome", "description": "Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell" } ], "orthologs": [ { "uniprot_canonical_ac": "Q9NZS2-1", "protein_name": "Killer cell lectin-like receptor subfamily F member 1", "gene_name": "KLRF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQDEERYMTLNVQSKKRSSAQTSQLTFKDYSVTLHWYKILLGISGTVNGILTLTLISLILLVSQGVLLKCQKGSCSNATQYEDTGDLKVNNGTRRNISNKDLCASRSADQTVLCQSEWLKYQGKCYWFSNEMKSWSDSYVYCLERKSHLLIIHDQLEMAFIQKNLRQLNYVWIGLNFTSLKMTWTWVDGSPIDSKIFFIKGPAKENSCAAIKESKIFSETCSSVFKWICQY", "length": 231 }, "evidence": [ { "id": "A0A4X1UAN1", "url": "https://omabrowser.org/oma/group/A0A4X1UAN1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transmembrane signaling receptor activity", "id": "GO:0004888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004888", "evidence": [ { 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Peptide", "id": "ENSSSCP00000011232.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011232.3" } ] } }, { "isoform_ac": "A0A4X1U665-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0X3/entry#A0A4X1U665-1", "sequence": { "sequence": "MKRQGASSERKRARIPSGKAGAANGFLMEVCVDSVESAVNAERGGAGRIELCSGLLEGGTTPSMGVLQVVKQYVQIPVFVMIRPRGGDFLYSDREVEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLVAICRPLPVTFHRGGGITDRNLQRILEGSGATEFHCSARSARDSGMKFRNSSVAMGASLSSSEYSLKVADVTKVRTLNAIAKNILV", "length": 219, "header": "tr|A0A4X1U665-1|A0A4X1U665_PIG Computationally mapped isoform of Copper homeostasis protein cutC homolog OS=Sus scrofa OX=9823 GN=CUTC PE=1 SV=1 CANONICAL=A0A4X1U0X3-1" }, "locus": { "chromosome": "14", "start_pos": 110921154, "end_pos": 110895213, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079127.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079127.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062396.1", "url": 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"isoform_ac": "A0A8D1N3J0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0X3/entry#A0A8D1N3J0-1", "sequence": { "sequence": "MKRQGASSERKRARIPSGKAGAANGFLMEVCVDSVESAVNAERGGVLQVVKQYVQIPVFVMIRPRGGDFLYSDREVEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLVAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSSALEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFHCSARSARDSGMKFRNSSVAMGASLSSSEYSLKVADVTKVRTLNAIAKNILV", "length": 253, "header": "tr|A0A8D1N3J0-1|A0A4X1U0X3_PIG Computationally mapped isoform of Copper homeostasis protein cutC homolog OS=Sus scrofa OX=9823 GN=CUTC PE=1 SV=1 CANONICAL=A0A4X1U0X3-1" }, "locus": { "chromosome": "14", "start_pos": 110921154, "end_pos": 110895213, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106367.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106367.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081058.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081058.1" } ] } }, { "isoform_ac": "A0A8W4FBL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0X3/entry#A0A8W4FBL0-1", "sequence": { "sequence": "CIFFFKSIESAFHSGAGRIELCSGLLEGGTTPSMGVLQVVKQYVQIPVFVMIRPRGGDFLYSDREVEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLVAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSSALEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFHCSARSARDSGMKFRNSSVAMGASLSSSEYSLKVADVTKVRTLNAIAKNILV", "length": 243, "header": "tr|A0A8W4FBL0-1|A0A4X1U0X3_PIG Computationally mapped isoform of Copper homeostasis protein cutC homolog OS=Sus scrofa OX=9823 GN=CUTC PE=1 SV=1 CANONICAL=A0A4X1U0X3-1" }, "locus": { "chromosome": "14", "start_pos": 110921154, "end_pos": 110900631, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096094.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096094.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076709.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076709.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUB6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUB6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155162", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155162", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q54K76-1", "protein_name": "Copper homeostasis protein cutC homolog", "gene_name": "cutc", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSEQDIKFEVCVDSLSSCIEAINGGASRLELCSSLFSGGLTPSYGLMKTLKEYIENHEISIDIFVMIRPRSGDFLYNQDEITIMKHDIELVKQISNQCSSFSGIVIGLLNSDGTIDKCNTEKLVELASPLSVTFHRAFDMTRDYIESFNTLNSINCSTSNNNNNNNSGGGCGKISRILTSGMESSVLEGIDTIKELIKLSNGTDITILPGGGITQKNINKIIKKTKLKEYHISARTVSDSKMQFRNTSVFMGGSLRESEYTYAIVDKNKIQGFINKSNTN", "length": 280 }, "evidence": [ { "id": "A0A4X1U0X3", "url": "https://omabrowser.org/oma/group/A0A4X1U0X3/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9D8X1-1", "protein_name": "Copper homeostasis protein cutC homolog", "gene_name": "Cutc", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKGASCERKQAWISSGKAGAGNGFLMEVCVDSVESAVNAERGGAGRIELCSGLLEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREVEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCLSLVALCRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSSALEGLPLIKQLIDQAKGRIVVMPGGGITDKNLQRILEGSGATEFHCSARSSRDSGMKFRNSSVAMGASLAHSEYSLKVTDVTKVRTLNAIAKDVLV", "length": 272 }, "evidence": [ { "id": "A0A4X1U0X3", "url": "https://omabrowser.org/oma/group/A0A4X1U0X3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NTM9-1", "protein_name": "Copper homeostasis protein cutC homolog", "gene_name": "CUTC", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKRQGASSERKRARIPSGKAGAANGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSSALEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFHCSARSTRDSGMKFRNSSVAMGASLSCSEYSLKVTDVTKVRTLNAIAKNILV", "length": 273 }, "evidence": [ { "id": "A0A4X1U0X3", "url": 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"function": [ { "annotation": "Binds and activates TIE2 receptor by inducing its tyrosine phosphorylation. Implicated in endothelial developmental processes later and distinct from that of VEGF. Appears to play a crucial role in mediating reciprocal interactions between the endothelium and surrounding matrix and mesenchyme. Mediates blood vessel maturation/stability. It may play an important role in the heart early development.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RBC7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBC7#function" }, { "database": "UniProtKB", "id": "ARBA00057929", "url": "https://www.uniprot.org/uniprotkb/ARBA00057929#function" }, { "database": "UniProtKB", "id": "A0A4X1TH61", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TH61#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TH61", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TH61" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANGPT1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TH61", "locus": { "chromosome": "4", "start_pos": 30233960, "end_pos": 29933135, "strand": "-", "evidence": [ { "database": "Ensembl 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"IPR020837", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020837", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036056", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036056", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037579", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037579", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050373", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050373", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057439", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057439", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QYNANAL", "url": "https://omabrowser.org/oma/group/QYNANAL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR19143", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19143", "database": "PANTHER", 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"categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-210993", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-210993", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5673001", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020944345", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944345", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TH61", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TH61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TH61-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TH61-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU27", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU27-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU27-1", "database": 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"isoforms": [ { "isoform_ac": "A0A4X1TH61-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TH61/entry#A0A4X1TH61-1", "sequence": { "sequence": "MTVFLSFAFLAAILTHIGCSNQRRSPENGGRRYNRIQHGQCAYTFILPEHDGNCRESTTDQYNTNALQRDAPHVEQDFSSQKLQHLEHVMENYTQWLQKIENYIVENMKSEMAQIQQNAVQNHTATMLEIGTSLLSQTAEQTRKLTDVETQVLNQTSRLEIQLLENSLSTYKLEKQLLQQTNEILKIHEKNSLLEHKILEMEGKHKEELDTLKEEKENLQGLVTRQTYIIQELEKQLNRATTNNSVLQKQQLELMDTVHNLVNLCTKEVLLKGGKKEEEKPFRDCADVYQAGFNKSGIYTIYINNMPEPKKVFCNMDLNGGGWTVIQHREDGSLDFQRGWKEYKMGFGNPSGEYWLGNEFIFAITSQRQYTLRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGHSGTAGKQSSLILHGADFSTKDADNDNCMCKCALMLTGGWWFDACGPSNLNGMFYTAGQNHGKLNGIKWHYFKGPSYSLRSTTMMIRPLDF", "length": 497, "header": "tr|A0A4X1TH61-1|A0A4X1TH61_PIG Isoform 1 of Angiopoietin-1 OS=Sus scrofa OX=9823 GN=ANGPT1 PE=4 SV=1 CANONICAL=A0A4X1TH61-1" }, "locus": { "chromosome": "4", "start_pos": 30231165, "end_pos": 29933695, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006624.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006624.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006448.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006448.4" } ] } }, { "isoform_ac": "A0A5G2QU27-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TH61/entry#A0A5G2QU27-1", "sequence": { "sequence": "MTVFLSFAFLAAILTHIGCSNQRRSPENGGRRYNRIQHGQCAYTFILPEHDGNCRESTTDQYNTNALQRDAPHVEQDFSSQKLQHLEHVMENYTQWLQKIENYIVENMKSEMAQIQQNAVQNHTATMLEIGTSLLSQTAEQTRKLTDVETQVLNQTSRLEIQLLENSLSTYKLEKQLLQQTNEILKIHEKNSLLEHKILEMEGKHKEELDTLKEEKENLQGLVTRQTYIIQELEKQLNRATTNNSVLQKQQLELMDTVHNLVNLCTKEVLLKGGKKEEEKPFRDCADVYQAGFNKSGIYTIYINNMPEPKKVFCNMDLNGGGWTVIQHREDGSLDFQRGWKEYKMGFGNPSGEYWLGNEFIFAITSQRQYTLRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGHSGTAGKQSSLILHGADFSTKDADNDNCKSLEIILFCPLIYHMFLCKTLLAYLEVCLLPQIYGGGVLSLVLNTFLNFLKSQLFYFVNTHYDTHSEMNNNLRIQH", "length": 510, "header": "tr|A0A5G2QU27-1|A0A4X1TH61_PIG Computationally mapped isoform of Angiopoietin-1 OS=Sus scrofa OX=9823 GN=ANGPT1 PE=4 SV=1 CANONICAL=A0A4X1TH61-1" }, "locus": { "chromosome": "4", "start_pos": 30210846, "end_pos": 29933695, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067730.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067730.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065500.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065500.1" } ] } }, { "isoform_ac": "A0A5G2RBC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TH61/entry#A0A5G2RBC7-1", "sequence": { "sequence": "MKSEMAQIQQNAVQNHTATMLEIGTSLLSQTAEQTRKLTDVETQVLNQTSRLEIQLLENSLSTYKLEKQLLQQTNEILKIHEKNSLLEHKILEMEGKHKEELDTLKEEKENLQGLVTRQTYIIQELEKQLNRATTNNSVLQKQQLELMDTVHNLVNLCTKEVLLKGGKKEEEKPFRDCADVYQAGFNKSGIYTIYINNMPEPKKVFCNMDLNGGGWTVIQHREDGSLDFQRGWKEYKMGFGNPSGEYWLGNEFIFAITSQRQYTLRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGHSGTAGKQSSLILHGADFSTKDADNDNCMCKCALMLTGGWWFDACGPSNLNGMFYTAGQNHGKLNGIKWHYFKGPSYSLRSTTMMIRPLDF", "length": 390, "header": "tr|A0A5G2RBC7-1|A0A4X1TH61_PIG Computationally mapped isoform of Angiopoietin-1 OS=Sus scrofa OX=9823 GN=ANGPT1 PE=4 SV=2 CANONICAL=A0A4X1TH61-1" }, "locus": { "chromosome": "4", "start_pos": 30231165, "end_pos": 30105769, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075145.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075145.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074317.2", "url": "https://www.ensembl.org/id/ENSSSCP00000074317.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU27", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU27" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-210993", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-210993", "resource": "Reactome", "description": "Tie2 Signaling" }, { "id": "R-SSC-5673001", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "resource": "Reactome", "description": "RAF/MAP kinase cascade" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PBH8-1", "protein_name": "Angiopoietin-1", "gene_name": "ANGPT1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSVFLSFAFLAALLAHIGCTTQRRGPEASGRRFNRIQHGQCTYTFILPEQDGNCRESTTDQYNTNALQRDAPHVEQDFSFQKLQHLEHVMENYTQWLQKLESYIVENMKSEMVQLQQNAVQNHTATMLEIGTSLLSQTAEQTRKLTDVETQVLNQTSRLEIQLLENSLSTYKLEKQLLQQTNEILKIHEKNSLLEHKILEMEERHKEEMDTLKEEKENLQSLVTRQSYIIQELEKQLNKATTNNSVLQKQQLELMDTVHTLITLCSKEGVLLKNAKKEEEKPFRDCADVYQSGFNKSGVYTIYINNVSDPKKVFCNMEVNGGGWTVIQHREDGSLDFQKGWKEYKMGFGSPSGEHWLGNEFIFAITSQRQYSLRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGHSGTAGKQSSLILHGAEFSTKDADNDNCMCKCALMLTGGWWFDACGPSNLNGMFYSAGQNHGKLNGIKWHYFKGPSYSLRSTTMMIRPLDF", "length": 498 }, "evidence": [ { "id": "A0A4X1TH61", "url": "https://omabrowser.org/oma/group/A0A4X1TH61/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O08538-1", "protein_name": "Angiopoietin-1", "gene_name": "Angpt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTVFLSFAFFAAILTHIGCSNQRRNPENGGRRYNRIQHGQCAYTFILPEHDGNCRESATEQYNTNALQRDAPHVEPDFSSQKLQHLEHVMENYTQWLQKLENYIVENMKSEMAQIQQNAVQNHTATMLEIGTSLLSQTAEQTRKLTDVETQVLNQTSRLEIQLLENSLSTYKLEKQLLQQTNEILKIHEKNSLLEHKILEMEGKHKEELDTLKEEKENLQGLVSRQTFIIQELEKQLSRATNNNSILQKQQLELMDTVHNLISLCTKEGVLLKGGKREEEKPFRDCADVYQAGFNKSGIYTIYFNNMPEPKKVFCNMDVNGGGWTVIQHREDGSLDFQRGWKEYKMGFGNPSGEYWLGNEFIFAITSQRQYMLRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGHTGTAGKQSSLILHGADFSTKDADNDNCMCKCALMLTGGWWFDACGPSNLNGMFYTAGQNHGKLNGIKWHYFKGPSYSLRSTTMMIRPLDF", "length": 498 }, "evidence": [ { "id": "A0A4X1TH61", "url": "https://omabrowser.org/oma/group/A0A4X1TH61/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O18920-1", "protein_name": "Angiopoietin-1", "gene_name": "ANGPT1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": 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"categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2032785", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2032785", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8951671", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951671", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001422183", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422183", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZS62", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZS62-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS62-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIG9", "url": "https://www.uniprot.org/uniprotkb/A0A287AIG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIG9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TQS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TQS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQS6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0RRG4", "url": "https://www.uniprot.org/uniprotkb/A0A8D0RRG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0RRG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0RRG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S6W9", "url": "https://www.uniprot.org/uniprotkb/F1S6W9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S6W9-1", "url": "https://www.uniprot.org/uniprotkb/F1S6W9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARKKVREIQAAIKVSSHIQVLARRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTFPGAPGFWPGMIQTGQPGSSQDVKPFVQQAYPIQPAVTAPIPGFEPASAPAPSVPAWQGRSIGTTKLRLVEFSAFLEQQRDPDSYNKHLFVHIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFWADLNCNIQDDAGAFYGVTSQYESSENMTVTCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSEHGAQHHIYRLVKD", "length": 432, "header": "tr|A0A4X1TQS6-1|A0A4X1TQS6_PIG Isoform 1 of TEA domain transcription factor 1 OS=Sus scrofa OX=9823 GN=TEAD1 PE=4 SV=1 CANONICAL=A0A4X1TQS6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZS62-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQS6/entry#A0A286ZS62-1", "sequence": { "sequence": "MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSRDFHSKLKVTSMDQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTFPGAPGFWPGMIQTGQPGSSQDVKPFVQQAYPIQPAVTAPIPGFEPASAPAPSVPAWQGRSIGTTKLRLVEFSAFLEQQRDPDSYNKHLFVHIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFWADLNCNIQDDAGAFYGVTSQYESSENMTVTCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSEHGAQHHIYRLVKD", "length": 415, "header": "tr|A0A286ZS62-1|A0A4X1TQS6_PIG Computationally mapped isoform of TEA domain transcription factor 1 OS=Sus scrofa OX=9823 GN=TEAD1 PE=4 SV=2 CANONICAL=A0A4X1TQS6-1" }, "locus": { "chromosome": "2", "start_pos": 46576900, "end_pos": 46403552, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059963.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059963.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034489.3", "url": "https://www.ensembl.org/id/ENSSSCP00000034489.3" } ] } }, { "isoform_ac": "A0A287AIG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQS6/entry#A0A287AIG9-1", "sequence": { "sequence": "MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSRDFHSKLKVTSMDQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTFPGAPGFWPGMIQTGQPGSSQDVKPFVQQAYPIQPAVTAPIPGFEPASAPAPSVPAWQGRSIGTTKLRLVEFSAFLEQQRDPDSADLNCNIQDDAGAFYGVTSQYESSENMTVTCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSEHGAQHHIYRLVKD", "length": 357, "header": "tr|A0A287AIG9-1|A0A4X1TQS6_PIG Computationally mapped isoform of TEA domain transcription factor 1 OS=Sus scrofa OX=9823 GN=TEAD1 PE=4 SV=3 CANONICAL=A0A4X1TQS6-1" }, "locus": { "chromosome": "2", "start_pos": 46576900, "end_pos": 46403552, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051097.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051097.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043685.3", "url": "https://www.ensembl.org/id/ENSSSCP00000043685.3" } ] } }, { "isoform_ac": "A0A4X1TQS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQS6/entry#A0A4X1TQS6-1", "sequence": { "sequence": "MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARKKVREIQAAIKVSSHIQVLARRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTFPGAPGFWPGMIQTGQPGSSQDVKPFVQQAYPIQPAVTAPIPGFEPASAPAPSVPAWQGRSIGTTKLRLVEFSAFLEQQRDPDSYNKHLFVHIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFWADLNCNIQDDAGAFYGVTSQYESSENMTVTCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSEHGAQHHIYRLVKD", "length": 432, "header": "tr|A0A4X1TQS6-1|A0A4X1TQS6_PIG Isoform 1 of TEA domain transcription factor 1 OS=Sus scrofa OX=9823 GN=TEAD1 PE=4 SV=1 CANONICAL=A0A4X1TQS6-1" }, "locus": { "chromosome": "2", "start_pos": 46576900, "end_pos": 46403552, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054149.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054149.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056461.3", "url": "https://www.ensembl.org/id/ENSSSCP00000056461.3" } ] } }, { "isoform_ac": "A0A8D0RRG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQS6/entry#A0A8D0RRG4-1", "sequence": { "sequence": "MRAFMVYFLEKAPGFGLENPAAKIEPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARKKVREIQAAIKVSSHIQVLARRKSRDFHSKLKVTSMDQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTFPGAPGFWPGMIQTGQPGSSQDVKPFVQQAYPIQPAVTAPIPGFEPASAPAPSVPAWQGRSIGTTKLRLVEFSAFLEQQRDPDSYNKHLFVHIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFWADLNCNIQDDAGAFYGVTSQYESSENMTVTCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSEHGAQHHIYRLVKD", "length": 474, "header": "tr|A0A8D0RRG4-1|A0A4X1TQS6_PIG Computationally mapped isoform of TEA domain transcription factor 1 OS=Sus scrofa OX=9823 GN=TEAD1 PE=4 SV=1 CANONICAL=A0A4X1TQS6-1" }, "locus": { "chromosome": "2", "start_pos": 46593043, "end_pos": 46403552, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014637.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014637.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014242.5", "url": "https://www.ensembl.org/id/ENSSSCP00000014242.5" } ] } }, { "isoform_ac": "F1S6W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQS6/entry#F1S6W9-1", "sequence": { "sequence": "MKGGTVVFAASPGLLLPPPLLHCTFKWKIFRSQQKHCVQKRLSRSYHQTLEETLLGKLPFGFGLENPAAKIEPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSRDFHSKLKVTSMDQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTFPGAPGFWPGMIQTGQPGSSQDVKPFVQQAYPIQPAVTAPIPGFEPASAPAPSVPAWQGRSIGTTKLRLVEFSAFLEQQRDPDSYNKHLFVHIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFWADLNCNIQDDAGAFYGVTSQYESSENMTVTCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSEHGAQHHIYRLVKD", "length": 500, "header": "tr|F1S6W9-1|A0A4X1TQS6_PIG Computationally mapped isoform of TEA domain transcription factor 1 OS=Sus scrofa OX=9823 GN=TEAD1 PE=4 SV=4 CANONICAL=A0A4X1TQS6-1" }, "locus": { "chromosome": "2", "start_pos": 46669550, "end_pos": 46403552, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014638.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014638.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014243.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014243.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0RRG4", "url": "https://www.uniprot.org/uniprotkb/A0A8D0RRG4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2032785", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2032785", "resource": "Reactome", "description": "YAP1- and WWTR1 (TAZ)-stimulated gene expression" }, { "id": "R-SSC-8951671", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951671", "resource": "Reactome", "description": "RUNX3 regulates YAP1-mediated transcription" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PMA2-1", "protein_name": "TEA domain transcription factor 1", "gene_name": "TEAD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARKKVREIQAAIKVSSHIQVLARRKSRDFHSKLKVTSMDQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTFPGAPGFWPGMIQTGQPGSSQDVKPFVQQAYPIQPSVTAPISGFEPTSAPAPSVPAWQGRSIGTTKLRLVEFSAFLEQQRDPESYNKHLFVHIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFWADLNCNIQDDTGAFYGVTSQYESSENMTITCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSEHGAQHHIYRLVKD", "length": 433 }, "evidence": [ { "id": "A0A4X1TQS6", "url": "https://omabrowser.org/oma/group/A0A4X1TQS6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8C2M0F3-1", "protein_name": "Transcriptional enhancer factor TEF-1 isoform X1", "gene_name": "Tead1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARKKVREIQAAIKVSSHIQVLARRKSRDFHSKLKVTSMDQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTFPGAPGFWPGMIQTGQPGSSQDVKPFVQQAYPIQPAVTAPIPGFEPASAPAPSVPAWQGRSIGTTKLRLVEFSAFLEQQRDPDSYNKHLFVHIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFWADLNCNIQDDAGAFYGVSSQYESSENMTVTCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSEHGAQHHIYRLVKD", "length": 436 }, "evidence": [ { "id": "A0A4X1TQS6", "url": "https://omabrowser.org/oma/group/A0A4X1TQS6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P28347-1", "protein_name": "Transcriptional enhancer factor TEF-1", "gene_name": "TEAD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTFPGAPGFWPGMIQTGQPGSSQDVKPFVQQAYPIQPAVTAPIPGFEPASAPAPSVPAWQGRSIGTTKLRLVEFSAFLEQQRDPDSYNKHLFVHIGHANHSYSDPLLESVDIRQIYDKFPEKKGGLKELFGKGPQNAFFLVKFWADLNCNIQDDAGAFYGVTSQYESSENMTVTCSTKVCSFGKQVVEKVETEYARFENGRFVYRINRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILLVVTNRDTQETLLCMACVFEVSNSEHGAQHHIYRLVKD", "length": 426 }, "evidence": [ { "id": "A0A4X1TQS6", "url": "https://omabrowser.org/oma/group/A0A4X1TQS6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TQS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQS6" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TQS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQS6" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TQS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQS6" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TQS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQS6" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TQS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQS6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TQS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQS6" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TQS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQS6" } ], "pmid": "" }, { "name": "transcription regulator complex", "id": "GO:0005667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005667", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TQS6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TQS6" } ], "pmid": "" }, { "name": "TEAD-YAP complex", "id": "GO:0140552", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140552", "evidence": [ { 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"Probable transmembrane reductase CYB561D1", "gene_name": "CYB561D1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTSLFSWHPVFMALAFCLCMAEAILLFSPEHSLFFFCSRKARIRLHWAGQTLAILCAALGLGFIISSRTRSELPHLVSWHSWVGALTLLATAVQALCGLCLLCPRAARVSRVARLKLYHLTCGLVVYLMATVTVLLGMYSVWFQAQIKGAAWYLCLALPVYPALVIMHQISRSYLPRKKMEM", "length": 229 }, "evidence": [ { "id": "A0A4X1TGA7", "url": "https://omabrowser.org/oma/group/A0A4X1TGA7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TGA7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TGA7" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TGA7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TGA7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TGA7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TGA7" } ], "pmid": "" }, { "name": "transmembrane monodehydroascorbate reductase activity", "id": "GO:0140575", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140575", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TGA7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TGA7" } ], "pmid": "" }, { "name": "transmembrane ascorbate ferrireductase activity", "id": "GO:0140571", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140571", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TGA7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TGA7" } ], "pmid": "" }, { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TGA7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TGA7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1TGA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TGA7" }, { "id": "PS50939", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50939" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cytochrome b561", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 224, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1SL32-1", "uniprot_ac": "A0A4X1SL32", "uniprot_id": "A0A4X1SL32_PIG", "mass": { "chemical_mass": 55467.0, "monoisotopic_mass": 55467.0 }, "refseq": { "ac": "XP_003358496", "name": "sodium-coupled neutral amino acid transporter 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358496" }, "gene_names": [ { "name": "SLC38A3", "type": "recommended", "evidence": [ { "id": "A0A4X1SL32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ] }, { "name": "SLC38A3", "type": "synonym", "evidence": [ { "id": "XP_003358496", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358496" } ] } ], "protein_names": [ { "name": "Solute carrier family 38 member 3", "type": "synonym", "evidence": [ { "id": "A0A4X1SL32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32/entry#names_and_taxonomy" } ] }, { "name": "sodium-coupled neutral amino acid transporter 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003358496", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358496" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC38A3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32", "locus": { "chromosome": "13", "start_pos": 32704535, "end_pos": 32683126, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011397", "url": "https://www.ensembl.org/id/ENSSSCG00000011397" } ] } } ], "crossref": [ { "id": "A0A4X1SL32", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SL32", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011397", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011397", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156039", "url": "https://www.ncbi.nlm.nih.gov/gene/100156039", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156039", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156039", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MEVAGEM", "url": "https://omabrowser.org/oma/group/MEVAGEM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480TWG2", "url": "https://www.orthodb.org/?gene=A0A480TWG2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SL32", "url": "https://www.orthodb.org/?gene=A0A4X1SL32", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22950", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22950", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22950:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22950:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-352230", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-352230", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003358496", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358496", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480TWG2", "url": "https://www.uniprot.org/uniprotkb/A0A480TWG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480TWG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TWG2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SL32-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP58", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP58-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP58-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RKV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RKV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKV0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0XD22", "url": "https://www.uniprot.org/uniprotkb/A0A8D0XD22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0XD22-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0XD22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPG8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPG8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPQ4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPP6", "url": "https://www.uniprot.org/uniprotkb/F1SPP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPP6-1", "url": "https://www.uniprot.org/uniprotkb/F1SPP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAPLQTEMVELVPNGKHLEGLLPVTAPMAGNQRVEGPGRSCVEGEGFLQKSPSKEPHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEEQTSDWYMNGNYLVILVSVIVILPLALMRQLGYLGYSSGFSLSCMVFFLIAVIYKKFHVPCPLAPSLANITGNFSLMEVVKEQAQLQVETEVTAFCTPNYFTLNTQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRALQQMLFQDQEFSWLRHVLIAISLLTCINLLVIFAPNILGIFGVIGATSAPCLIFIFPAIFYFRIMPIEKEPAKSTPKILALCFAAVGLLLMTMSLSFIIIDWVSGTSQHGGSH", "length": 504, "header": "tr|A0A4X1SL32-1|A0A4X1SL32_PIG Isoform 1 of Solute carrier family 38 member 3 OS=Sus scrofa OX=9823 GN=SLC38A3 PE=1 SV=1 CANONICAL=A0A4X1SL32-1" }, "isoforms": [ { "isoform_ac": "A0A480TWG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32/entry#A0A480TWG2-1", "sequence": { "sequence": "MGGGGRLKCCSAPLLCDSVPPAVLKALWKTADHVSVGACVPGGGGSRAMEAPLQTEMVELVPNGKHLEGLLPVTAPMAGNQRVEGPGRSCVEGEGFLQKSPSKEPHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEEQTSDWYMNGNYLVILVSVIVILPLALMRQLGYLGYSSGFSLSCMVFFLIAVIYKKFHVPCPLAPSLANITGNFSLMEVVKEQAQLQVETEVTAFCTPNYFTLNTQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRALQQMLFQDQEFSWLRHVLIAISLLTCINLLVIFAPNILGIFGVIGATSAPCLIFIFPAIFYFRIMPIEKEPAKSTPKILALCFAAVGLLLMTMSLSFIIIDWVSGTSQHGGSH", "length": 552, "header": "tr|A0A480TWG2-1|A0A4X1SL32_PIG Computationally mapped isoform of Solute carrier family 38 member 3 OS=Sus scrofa OX=9823 GN=SLC38A3 PE=1 SV=1 CANONICAL=A0A4X1SL32-1" }, "locus": { "chromosome": "13", "start_pos": 32699011, "end_pos": 32683305, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039860.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039860.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050622.3", "url": "https://www.ensembl.org/id/ENSSSCP00000050622.3" } ] } }, { "isoform_ac": "A0A4X1SL32-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32/entry#A0A4X1SL32-1", "sequence": { "sequence": "MEAPLQTEMVELVPNGKHLEGLLPVTAPMAGNQRVEGPGRSCVEGEGFLQKSPSKEPHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEEQTSDWYMNGNYLVILVSVIVILPLALMRQLGYLGYSSGFSLSCMVFFLIAVIYKKFHVPCPLAPSLANITGNFSLMEVVKEQAQLQVETEVTAFCTPNYFTLNTQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRALQQMLFQDQEFSWLRHVLIAISLLTCINLLVIFAPNILGIFGVIGATSAPCLIFIFPAIFYFRIMPIEKEPAKSTPKILALCFAAVGLLLMTMSLSFIIIDWVSGTSQHGGSH", "length": 504, "header": "tr|A0A4X1SL32-1|A0A4X1SL32_PIG Isoform 1 of Solute carrier family 38 member 3 OS=Sus scrofa OX=9823 GN=SLC38A3 PE=1 SV=1 CANONICAL=A0A4X1SL32-1" }, "locus": { "chromosome": "13", "start_pos": 32699011, "end_pos": 32693373, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085194.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085194.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062174.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062174.1" } ] } }, { "isoform_ac": "A0A5G2QP58-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32/entry#A0A5G2QP58-1", "sequence": { "sequence": "MEAPLQTEMVELVPNGKHLEGLLPVTAPMAGNQRVEGPGRSCVEGEGFLQKSPSKEPHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEEQTSDWYMNGNYLVILVSVIVILPLALMRQLGYLGYSSGFSLSCMVFFLIAVIYKKFHVPCPLAPSLANITGNFSLMEVVKEQAQLQVETEVTAFCTPNYFTLNTQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRALQQMLFQDQEFSWLRHVLIAISLLTCINLLVIFAPNILGIFGVIGPLFCCSWSLADDHELELHHY", "length": 456, "header": "tr|A0A5G2QP58-1|A0A4X1SL32_PIG Computationally mapped isoform of Solute carrier family 38 member 3 OS=Sus scrofa OX=9823 GN=SLC38A3 PE=1 SV=1 CANONICAL=A0A4X1SL32-1" }, "locus": { "chromosome": "13", "start_pos": 32698971, "end_pos": 32693373, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067705.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067705.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066485.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066485.1" } ] } }, { "isoform_ac": "A0A5G2RKV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32/entry#A0A5G2RKV0-1", "sequence": { "sequence": "VLLSGRGADHVSVGACVPGGGGSRAMEAPLQTEMVELVPNGKHLEGLLPVTAPMAGNQRVEGPGRSCVEGEGFLQKSPSKEPHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEEQTSDWYMNGNYLVILVSVIVILPLALMRQLGYLGYSSGFSLSCMVFFLIAVIYKKFHVPCPLAPSLANITGNFSLMEVVKEQAQLQVETEVTAFCTPNYFTLNTQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRALQQMLFQDQEFSWLRHVLIAISLLTCINLLVIFAPNILGIFGVIGATSAPCLIFIFPAIFYFRIMPIEKEPAKSTPKILALCFAAVGLLLMTMSLSFIIIDWVSGTSQHGGSH", "length": 529, "header": "tr|A0A5G2RKV0-1|A0A4X1SL32_PIG Computationally mapped isoform of Solute carrier family 38 member 3 OS=Sus scrofa OX=9823 GN=SLC38A3 PE=1 SV=1 CANONICAL=A0A4X1SL32-1" }, "locus": { "chromosome": "13", "start_pos": 32699011, "end_pos": 32692951, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066776.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066776.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072828.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072828.2" } ] } }, { "isoform_ac": "A0A8D0XD22-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32/entry#A0A8D0XD22-1", "sequence": { "sequence": "MGAHFLLERKQIPQRFSIWSTECWRDLKTVHFERGKFYTSTEGFLQEAPKTADHVSVGACVPGGGGSRAMEAPLQTEMVELVPNGKHLEGLLPVTAPMAGNQRVEGPGRSCVEGEGFLQKSPSKEPHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEEQTSDWYMNGNYLVILVSVIVILPLALMRQLGYLGYSSGFSLSCMVFFLIAVIYKKFHVPCPLAPSLANITGNFSLMEVVKEQAQLQVETEVTAFCTPNYFTLNTQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRALQQMLFQDQEFSWLRHVLIAISLLTCINLLVIFAPNILGIFGVIGATSAPCLIFIFPAIFYFRIMPIEKEPAKSTPKILALCFAAVGLLLMTMSLSFIIIDWVSGTSQHGGSH", "length": 573, "header": "tr|A0A8D0XD22-1|A0A4X1SL32_PIG Computationally mapped isoform of Solute carrier family 38 member 3 OS=Sus scrofa OX=9823 GN=SLC38A3 PE=1 SV=1 CANONICAL=A0A4X1SL32-1" }, "locus": { "chromosome": "13", "start_pos": 32699011, "end_pos": 32685902, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074330.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074330.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065111.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065111.2" } ] } }, { "isoform_ac": "A0A8W4FPG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32/entry#A0A8W4FPG8-1", "sequence": { "sequence": "MPRTQKDGARELGDERADHVSVGACVPGGGGSRAMEAPLQTEMVELVPNGKHLEGLLPVTAPMAGNQRVEGPGRSCVEGEGFLQKSPSKEPHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEEQTSDWYMNGNYLVILVSVIVILPLALMRQLGYLGYSSGFSLSCMVFFLIAVIYKKFHVPCPLAPSLANITGNFSLMEVVKEQAQLQVETEVTAFCTPNYFTLNTQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRALQQMLFQDQEFSWLRHVLIAISLLTCINLLVIFAPNILGIFGVIGATSAPCLIFIFPAIFYFRIMPIEKEPAKSTPKILALCFAAVGLLLMTMSLSFIIIDWVSGTSQHGGSH", "length": 538, "header": "tr|A0A8W4FPG8-1|A0A4X1SL32_PIG Computationally mapped isoform of Solute carrier family 38 member 3 OS=Sus scrofa OX=9823 GN=SLC38A3 PE=1 SV=1 CANONICAL=A0A4X1SL32-1" }, "locus": { "chromosome": "13", "start_pos": 32699011, "end_pos": 32688942, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100896.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100896.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081088.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081088.1" } ] } }, { "isoform_ac": "A0A8W4FPQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32/entry#A0A8W4FPQ4-1", "sequence": { "sequence": "ELRSSTDSTSQMGKLRPHSVGACVPGGGGSRAMEAPLQTEMVELVPNGKHLEGLLPVTAPMAGNQRVEGPGRSCVEGEGFLQKSPSKEPHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEEQTSDWYMNGNYLVILVSVIVILPLALMRQLGYLGYSSGFSLSCMVFFLIAVIYKKFHVPCPLAPSLANITGNFSLMEVVKEQAQLQVETEVTAFCTPNYFTLNTQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRALQQMLFQDQEFSWLRHVLIAISLLTCINLLVIFAPNILGIFGVIGATSAPCLIFIFPAIFYFRIMPIEKEPAKSTPKILALCFAAVGLLLMTMSLSFIIIDWVSGTSQHGGSH", "length": 536, "header": "tr|A0A8W4FPQ4-1|A0A4X1SL32_PIG Computationally mapped isoform of Solute carrier family 38 member 3 OS=Sus scrofa OX=9823 GN=SLC38A3 PE=1 SV=1 CANONICAL=A0A4X1SL32-1" }, "locus": { "chromosome": "13", "start_pos": 32699011, "end_pos": 32693053, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097389.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097389.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080300.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080300.1" } ] } }, { "isoform_ac": "F1SPP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32/entry#F1SPP6-1", "sequence": { "sequence": "MVLSGQGWRRADHVSVGACVPGGGGSRAMEAPLQTEMVELVPNGKHLEGLLPVTAPMAGNQRVEGPGRSCVEGEGFLQKSPSKEPHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEEQTSDWYMNGNYLVILVSVIVILPLALMRQLGYLGYSSGFSLSCMVFFLIAVIYKKFHVPCPLAPSLANITGNFSLMEVVKEQAQLQVETEVTAFCTPNYFTLNTQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRALQQMLFQDQEFSWLRHVLIAISLLTCINLLVIFAPNILGIFGVIGATSAPCLIFIFPAIFYFRIMPIEKEPAKSTPKILALCFAAVGLLLMTMSLSFIIIDWVSGTSQHGGSH", "length": 532, "header": "tr|F1SPP6-1|A0A4X1SL32_PIG Computationally mapped isoform of Solute carrier family 38 member 3 OS=Sus scrofa OX=9823 GN=SLC38A3 PE=1 SV=3 CANONICAL=A0A4X1SL32-1" }, "locus": { "chromosome": "13", "start_pos": 32699011, "end_pos": 32691511, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012475.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012475.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012150.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012150.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP58", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP58" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156039", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156039", "resource": "KEGG Pathway" }, { "id": "R-SSC-352230", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-352230", "resource": "Reactome", "description": "Amino acid transport across the plasma membrane" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HP74-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "Slc38a3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEIPRQAEMVELVPNGKHLEGLLPVGVSTTNTQRAEDPQHCAEGKGFLQKSSSKEPHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEKPTSVWYMDGNYLVILVSVTIILPLALMRQLGYLGYSSGFSLSCMVFFLIAVIYKKFQVPCPLAHNLANATGNLSHMVVLEKAQLQDEPEAAAFCSPSYFTLNSQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKKKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLIAVTLTVPIVLFPVRRAIQQMLFQNQEFSWLRHVIIATGLLTCINLLVIFAPNILGIFGIIGATSAPCLIFIFPAIFYFRIMPTEKEPARSIPKILALCFAAVGFLLMTMSLSFIIIDWVSGTSQHGGHH", "length": 502 }, "evidence": [ { "id": "A0A4X1SL32", "url": "https://omabrowser.org/oma/group/A0A4X1SL32/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V1ACH1-1", "protein_name": "Solute carrier family 38 member 3", "gene_name": "SLC38A3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEGPELPVQAEMVELVPNGKHAAALGTTTIPSLPGDRFDENQCGAEMEEFLPHGSEKKQTHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGFRAFGTPGKLAAAIAITLQNIGAMSSYLYIVKSEVPLVIQTFLNLEEKTTDWYLNGNYLVILVSVTVILPLALMKQLGYLGYASGFSLSCMVFFLISVIYKKFQIPCPLPEQGGNITSGINVTLGSEHWDGPAAPLPPEVGACTPSFFTLNSQTAYTIPIMAFAFVCHPEVLPIYTELKNPSKKKMQCISNISITVMYLMYFLAALFGYLTFYGRVESELLHTYSRVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRAIQQMLFQGKNFSWIRHVAIAVILLTFINLLVIFAPSILGIFGLIGATSAPCLIFIFPAIFYIRIMPKDKEPLRSTPKILAACFALLGVLFMIMSLSFIITDWATGGGRSGGSH", "length": 508 }, "evidence": [ { "id": "A0A4X1SL32", "url": "https://omabrowser.org/oma/group/A0A4X1SL32/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1MXZ5-1", "protein_name": "Solute carrier family 38 member 3", "gene_name": "SLC38A3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEAPLQTEMVELVPNGKHLEGLLPVATPTAGGQRVEGPGRSCVEGEGFLPKSPSKEPHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLHLEDWTSDWYTNGNYLVILVSIVVILPLALMRQLGYLGYSSGFSLSCMMFFLIAVIYKKFHVPCPLSPNATNVTSNISLVEIDKDEAGLQAKTEAGAFCTPSYFTLNTQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQRISNLSIAVMYVMYFLAALFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRALQQILFPNREFSWLRHVLIAVVLLTCINLLVIFAPNILGIFGVIGATSAPCLIFIFPAIFYFRIIPTEKEPARSTPKILALCFAALGILLMTMSLSFIIMDWVSGTSRHGGSH", "length": 504 }, "evidence": [ { "id": "A0A4X1SL32", "url": "https://omabrowser.org/oma/group/A0A4X1SL32/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q99624-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "SLC38A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEAPLQTEMVELVPNGKHSEGLLPVITPMAGNQRVEDPARSCMEGKSFLQKSPSKEPHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGVVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEEKTSDWYMNGNYLVILVSVTIILPLALMRQLGYLGYSSGFSLSCMVFFLIAVIYKKFHVPCPLPPNFNNTTGNFSHVEIVKEKVQLQVEPEASAFCTPSYFTLNSQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKKKMQHISNLSIAVMYIMYFLAALFGYLTFYNGVESELLHTYSKVDPFDVLILCVRVAVLTAVTLTVPIVLFPVRRAIQQMLFPNQEFSWLRHVLIAVGLLTCINLLVIFAPNILGIFGVIGATSAPFLIFIFPAIFYFRIMPTEKEPARSTPKILALCFAMLGFLLMTMSLSFIIIDWASGTSRHGGNH", "length": 504 }, "evidence": [ { "id": "A0A4X1SL32", "url": "https://omabrowser.org/oma/group/A0A4X1SL32/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DCP2-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "Slc38a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIPRQTEMVELVPNGKHLEGLLPVGVPTTDTQRTEDTQHCGEGKGFLQKSPSKEPHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEKPASVWYMDGNYLVILVSVTIILPLALMRQLGYLGYSSGFSLSCMVFFLIAVIYKKFQVPCPLAHNLANATGNFSHMVVAEEKAQLQGEPDTAAEAFCTPSYFTLNSQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLIAVTLTVPIVLFPVRRAIQQMLFQNQEFSWLRHVLIATGLLTCINLLVIFAPNILGIFGIIGATSAPCLIFIFPAIFYFRIMPTDKEPARSTPKILALCFAAVGFLLMTMSLSFIIIDWVSGTSQHGGNH", "length": 505 }, "evidence": [ { "id": "A0A4X1SL32", "url": "https://omabrowser.org/oma/group/A0A4X1SL32/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JHZ9-1", "protein_name": "Sodium-coupled neutral amino acid transporter 3", "gene_name": "Slc38a3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEIPRQTEMVELVPNGKHLEGLLPVGMPTADTQRAEDAQHCGEGKGFLQQSSSKEPHFTDFEGKTSFGMSVFNLSNAIMGSGILGLAYAMANTGIILFLFLLTAVALLSSYSIHLLLKSSGIVGIRAYEQLGYRAFGTPGKLAAALAITLQNIGAMSSYLYIIKSELPLVIQTFLNLEKPTPVWYMDGNYLVILVSVIIILPLALMRQLGYLGYSSGFSLSCMVFFLIAVIYKKFQVPCPLAHNLVNATGNFSHMVVVEEKSQLQSEPDTAEAFCTPSYFTLNSQTAYTIPIMAFAFVCHPEVLPIYTELKDPSKRKMQHISNLSIAVMYVMYFLAALFGYLTFYDGVESELLHTYSKVDPFDVLILCVRVAVLIAVTLTVPIVLFPVRRAIQQMLFQNQEFSWLRHVLIATGLLTCINLLVIFAPNILGIFGIIGATSAPCLIFIFPAIFYFRIMPTEKEPVRSTPKILALCFAAVGFLLMTMSLSFIITDWVSGTSQHGGNH", "length": 504 }, "evidence": [ { "id": "A0A4X1SL32", "url": "https://omabrowser.org/oma/group/A0A4X1SL32/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "L-alanine transmembrane transporter activity", "id": "GO:0015180", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015180", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" }, { "name": "L-glutamine, sodium:proton antiporter activity", "id": "GO:0140830", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140830", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" }, { "name": "L-asparagine, sodium:proton antiporter activity", "id": "GO:0140831", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140831", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" }, { "name": "L-histidine, sodium:proton antiporter activity", "id": "GO:0140832", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140832", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" }, { "name": "L-glutamine transmembrane transporter activity", "id": "GO:0015186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015186", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" }, { "name": "L-histidine transmembrane transporter activity", "id": "GO:0005290", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005290", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" }, { "name": "L-asparagine transmembrane transporter activity", "id": "GO:0015182", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015182", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "glutamine secretion", "id": "GO:0010585", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010585", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" }, { "name": "L-glutamine import across plasma membrane", "id": "GO:1903803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903803", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" }, { "name": "histidine transport", "id": "GO:0015817", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015817", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" }, { "name": "intracellular amino acid homeostasis", "id": "GO:0080144", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0080144", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" }, { "name": "L-histidine import across plasma membrane", "id": "GO:1903810", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903810", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" }, { "name": "glutamine transport", "id": "GO:0006868", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006868", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" }, { "name": "amino acid transmembrane transport", "id": "GO:0003333", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003333", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" }, { "name": "asparagine transport", "id": "GO:0006867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006867", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SL32", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SL32" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 248, "end_pos": 250, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 323, "end_pos": 325, "annotation": "n_glycosylation_sequon" }, { "start_pos": 74, "end_pos": 76, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": 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"url": "https://www.uniprot.org/uniprotkb/A0A8D0HUX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPAARGKSKSKAPVTFGDLAIYFSQEEWECLSPIQKDLYEDVMLENYQNLVSLGLSFRRPNVITLLEKGKAPWMVEPVKRRRGLDLGSKCETKKLPPNQCNKSGQSVSQKPVSAPQKVPTGKRGCKKNSVLIKPKKIHSKKKSLKCNDCGKFFSQSLSLKLHQNCHTGEKPYECSDCRKAFRQISSLILHQKIHSGRKSYECDKCGESFIRRTSLILHGKSHDEKEILDCGKELSQCPPLSIHRKIHFVKNVYQCRKCEKAFIRMSSFLLHKKIHNGKKMHKCNKCGRGFRKKSVLVIHKRIHTGEKTHENEKALSMSLQQKSHHLGNPYKCRKCKKSFSRISSIILHQRIHRSKKAYKCDKCEKVFRRLSTLILHLRIHNREKRYRCSKCEKVCNRHSSLIQHQKIHARKKKLFECKECGKMFSGTANLKIHQNIHSEEKPFKCNKCSKVFGRQSFLIEHQRIHTGEKPYQCEECGKAFSHRISLTRHKRIHTEDRPYECDQCGKAFSQSAHLAQHERIHTGEKPYTCKTCGKAFSQRTSLILHERSHTGEKPYECNECGKAFSSGSDLIRHQRSHSSEKPYECSKCGKAYSRSSSLIRHQNSHSEEKA", "length": 610, "header": "tr|A0A4X1T2Y9-1|A0A4X1T2Y9_PIG Isoform 1 of Zinc finger protein 667 OS=Sus scrofa OX=9823 GN=ZNF667 PE=3 SV=1 CANONICAL=A0A4X1T2Y9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1T2Y9-1", "url": 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Transcript", "id": "ENSSSCT00000049353.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049353.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054360.1", "url": "https://www.ensembl.org/id/ENSSSCP00000054360.1" } ] } }, { "isoform_ac": "A0A8D0HUX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T2Y9/entry#A0A8D0HUX9-1", "sequence": { "sequence": "MGVPEPHSERPIRRCHVGKLPEPGVSWTFLSEAECDHLIGKGESALDGGASEKTPGLGGHLGCFHLLATVNHAAVNMGVQISLRDPDFNSFGYVPRDLGSKCETKKLPPNQCNKSGQSVSQKPVSAPQKVPTGKRGCKKNSVLIKPKKIHSKKKSLKCNDCGKFFSQSLSLKLHQNCHTGEKPYECSDCRKAFRQISSLILHQKIHSGRKSYECDKCGESFIRRTSLILHGKSHDEKEILDCGKELSQCPPLSIHRKIHFVKNVYQCRKCEKAFIRMSSFLLHKKIHNGKKMHKCNKCGRGFRKKSVLVIHKRIHTGEKTHENEKALSMSLQQKSHHLGNPYKCRKCKKSFSRISSIILHQRIHRSKKAYKCDKCEKVFRRLSTLILHLRIHNREKRYRCSKCEKVCNRHSSLIQHQKIHARKKKLFECKECGKMFSGTANLKIHQNIHSEEKPFKCNKCSKVFGRQSFLIEHQRIHTGEKPYQCEECGKAFSHRISLTRHKRIHTEDRPYECDQCGKAFSQSAHLAQHERIHTGEKPYTCKTCGKAFSQRTSLILHERSHTGEKPYECNECGKAFSSGSDLIRHQRSHSSEKPYECSKCGKAYSRSSSLIRHQNSHSEEKA", "length": 622, "header": "tr|A0A8D0HUX9-1|A0A4X1T2Y9_PIG Computationally mapped isoform of Zinc finger protein 667 OS=Sus scrofa OX=9823 GN=ZNF667 PE=3 SV=1 CANONICAL=A0A4X1T2Y9-1" }, "locus": { "chromosome": "6", "start_pos": 60663894, "end_pos": 60651332, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024287.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024287.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024069.2", "url": "https://www.ensembl.org/id/ENSSSCP00000024069.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0HUX9", "url": "https://www.uniprot.org/uniprotkb/A0A8D0HUX9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521730", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521730", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q2TL60-1", "protein_name": "Zinc finger protein 667", "gene_name": "Znf667", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPAVRGKSKSKAPVTFGDLAIYFSQEEWEWLSPMQKDLYEDVMLENYHNLVSVGLACRRPNIIALLEKGKAPWVIEPSRRRWGPESGSKYETKKLPPNSCHKSGPSICEKPTSSQQKVPTEKAKHNKSSVPSKSKKEHSGKKSLKCNLCGKTFFRSLSLKLHQDFHTGERSYECSTCRHVFRQILSLILHQRVHNWNKSYECDKCGDIFNKKLTLMIHRRIHNGKESFHHEKASDSCPSLSLHRNNHTTDSVHQCRKCGKVFSRMSSLLLHKRSHNRKKIQKYNKYKRGFKKQPVLVHKRVCIGKKTHESKKALIQSARQKTCQSENPFMCGKCGKSFSRISALMLHQRIHTSGNPYKCDKCQKDFGRLSTLILHLRIHSGEKQFKCSKCEKVCSRLSSFIQHQKIHKRKKKLIACKECGKMFGGMKNLKVHLNIHSEEKPFKCNKCSKVFGRQSFLSEHQRIHTGEKPYQCEECGKAFSHRISLTRHKRIHSEDRPYECDLCGKAFSQSAHLAQHERIHTGEKPYACKICKKSFAQRISLILHERSHTGERPYECNECGKAFSSGSDLIRHQRSHSSEKPYECSKCGKAYSRSSSLIRHQSIHSEETP", "length": 609 }, "evidence": [ { "id": "A0A4X1T2Y9", "url": "https://omabrowser.org/oma/group/A0A4X1T2Y9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5HYK9-1", "protein_name": "Zinc finger protein 667", "gene_name": "ZNF667", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPSARGKSKSKAPITFGDLAIYFSQEEWEWLSPIQKDLYEDVMLENYRNLVSLGLSFRRPNVITLLEKGKAPWMVEPVRRRRAPDSGSKCETKKLPPNQCNKSGQSICQKLVSAQQKAPTRKSGCNKNSVLVKPKKGHSGKKPLKCNDCGKTFSRSFSLKLHQNIHTGEKPFECSNCRKAFRQISSILLHQRIHSGKKSHECNKCGESFNQRTTLILHMRIHDGKEILDCGKALSQCQSFNIHQKIHVVGNVCQCRKCGKAFNQMSSLLLHKKIHNGKKTHKYNKCGRGFKKKSVFVVHKRIHAGEKIPENAKALSQSLQQRSHHLENPFKCRKCGKLFNRISPLMLHQRIHTSEKPYKCDKCDKFFRRLSTLILHLRIHNGEKLYRCNKCEKVCNRHSSLIQHQKVHTKKKKLFECKECGKMFSGTANLKIHQNIHSEEKPFKCNKCSKVFGRQSFLIEHQRIHTGEKPYQCEECGKAFSHRISLTRHKRIHTEDRPYECDQCGKAFSQSAHLAQHERIHTGEKPYTCKTCGKAFSQRTSLILHERSHTGEKPYECNECGKAFSSGSDLIRHQRSHSSEKPYECSKCGKAYSRSSSLIRHQNTHSEEKA", "length": 610 }, "evidence": [ { "id": "A0A4X1T2Y9", "url": "https://omabrowser.org/oma/group/A0A4X1T2Y9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5MYW4-1", "protein_name": "Zinc finger protein 667", "gene_name": "Znf667", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPAARGKSKSKAPVTFGDLAIYFSQEEWEWLSPNQKDLYEDVMLENYHNLVSVGLACRRPNIIALLEKGKAPWMVEPSRKRRGPELGSKDETKKLPPSQCNKSGPSICKKPDSSQQKVPTEKAKHNKNAVPRKNKKGHSGKKSLKCNSCGKTFFRSLSLKLHQGFHTGERSYECSTCGQVFRQILSLILHQRVHTQNKSYECDKCGDIFNKKLTLMIHRRSHNGKENFHHEKTSDSCPSLSPHHNNHAIDSIHQCRKCGKVFSRMSSLLLHKKIHNRKRIQKYSACGRGFKKKPVLVHKRICIGKKTHENKALIQSLRQRTYQSENPFTCRKCRKSFSRISALMLHQRAHTSGNPYKCDKCQKDFGRLSTLILHLRIHSGEKQFKCNKCEKVCNRLSSFIQHKKIHKRKKKLIECKECGKMFGGMKNLKVHLNIHSEEKPFKCNKCSKVFGRQSFLSEHQRIHTGEKPYQCEECGKAFSHRISLTRHKRIHSEDRPYECDLCGKAFSQSAHLAQHERIHTGEKPYACKICKKSFTQRISLILHERSHTGEKPYECNECGKAFSSGSDLIRHQRSHSSEKPYECSKCGKAYSRSSSLIRHQSIHSEEMS", "length": 608 }, "evidence": [ { "id": "A0A4X1T2Y9", "url": "https://omabrowser.org/oma/group/A0A4X1T2Y9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T2Y9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T2Y9" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T2Y9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T2Y9" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T2Y9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T2Y9" } ], "pmid": "" }, { "name": "positive regulation of biosynthetic process", "id": "GO:0009891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009891", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T2Y9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T2Y9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T2Y9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T2Y9" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T2Y9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T2Y9" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T2Y9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T2Y9" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T2Y9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T2Y9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T2Y9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T2Y9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1T2Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T2Y9" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 144, "end_pos": 171, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1T2Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T2Y9" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 85, "start_aa": "Val", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ 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"authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TCI2-1", "uniprot_ac": "A0A4X1TCI2", "uniprot_id": "A0A4X1TCI2_PIG", "mass": { "chemical_mass": 13842.0, "monoisotopic_mass": 13842.0 }, "refseq": { "ac": "XP_003354919", "name": "protein yippee-like 5 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354919" }, "gene_names": [ { "name": "YPEL5", "type": "recommended", "evidence": [ { "id": "A0A4X1TCI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCI2" } ] }, { "name": "YPEL5", "type": "synonym", "evidence": [ { "id": "XP_003354919", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354919" } ] }, { "name": "YPEL", "type": "synonym", "evidence": [ { "id": "A0A4X1TCI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCI2" } ] } ], "protein_names": [ { "name": "Protein yippee-like", "type": "recommended", "evidence": [ { "id": "A0A4X1TCI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCI2/entry#names_and_taxonomy" } ] }, { "name": "protein yippee-like 5 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003354919", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354919" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCI2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "YPEL5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCI2", "locus": { "chromosome": "3", "start_pos": 109178095, "end_pos": 109195586, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008529", "url": "https://www.ensembl.org/id/ENSSSCG00000008529" } ] } } ], "crossref": [ { "id": "A0A4X1TCI2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TCI2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100620823", "url": "https://www.ncbi.nlm.nih.gov/gene/100620823", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620823", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620823", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YNCAACE", "url": "https://omabrowser.org/oma/group/YNCAACE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TCI2", "url": "https://www.orthodb.org/?gene=A0A4X1TCI2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8D0MZ33", "url": "https://www.orthodb.org/?gene=A0A8D0MZ33", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13848", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13848", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003354919", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354919", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TCI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TCI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCI2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0MZ33", "url": "https://www.uniprot.org/uniprotkb/A0A8D0MZ33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0MZ33-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0MZ33-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESEGFEEHVPSDNS", "length": 121, "header": "tr|A0A4X1TCI2-1|A0A4X1TCI2_PIG Isoform 1 of Protein yippee-like OS=Sus scrofa OX=9823 GN=YPEL5 PE=3 SV=1 CANONICAL=A0A4X1TCI2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TCI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCI2/entry#A0A4X1TCI2-1", "sequence": { "sequence": "MGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESEGFEEHVPSDNS", "length": 121, "header": "tr|A0A4X1TCI2-1|A0A4X1TCI2_PIG Isoform 1 of Protein yippee-like OS=Sus scrofa OX=9823 GN=YPEL5 PE=3 SV=1 CANONICAL=A0A4X1TCI2-1" }, "locus": { "chromosome": "3", "start_pos": 109182151, "end_pos": 109179765, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104306.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104306.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080718.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080718.1" } ] } }, { "isoform_ac": "A0A8D0MZ33-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCI2/entry#A0A8D0MZ33-1", "sequence": { "sequence": "MDTSQVFRTSAIKMGRIFLDHIGGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESEGFEEHVPSDNS", "length": 134, "header": "tr|A0A8D0MZ33-1|A0A4X1TCI2_PIG Computationally mapped isoform of Protein yippee-like OS=Sus scrofa OX=9823 GN=YPEL5 PE=3 SV=1 CANONICAL=A0A4X1TCI2-1" }, "locus": { "chromosome": "3", "start_pos": 109182834, "end_pos": 109179765, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057577.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057577.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052600.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052600.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0MZ33", "url": "https://www.uniprot.org/uniprotkb/A0A8D0MZ33" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620823", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620823", "resource": "KEGG Pathway" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7JVK3-1", "protein_name": "Protein yippee-like", "gene_name": "Ypel5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": 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A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0WVS8", "url": "https://www.uniprot.org/uniprotkb/A0A8D0WVS8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522035", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522035", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QPU7-1", "protein_name": "Transmembrane 4 L6 family member 1", "gene_name": "Tm4sf1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCSSKCARYIGHSLVLFAVLCIVANILLYFPNGETKYAVEDHLSRFVWFFAGIVGGGLLVLLPAFVFIGLEEDDCCGCCGRENYGKRCTMLSSVLAALIGIAGSGYCVIVAALGLAEGPKCSDSHGVWNYTFANTDGQYLLDPTTWSKCHEPKNIVEWNVTLFSILLALGGIEFILCLIQVINEVLGGICSYCCSHQQQYDC", "length": 202 }, "evidence": [ { "id": "A0A4X1T081", "url": "https://omabrowser.org/oma/group/A0A4X1T081/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I5ZZ30-1", "protein_name": "Transmembrane 4 L six family member 1", "gene_name": "Tm4sf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCYVKCARYIGFSLVWAAVFCIVANVLLYFPNGETKYATEGHLSRFVWYFAGIVGGGLLMLLPAFLFIRLEEEDCCGCCGYENYGKRCSMLSSVLAALIGITGSGYCVIVASLGLAEGPKCSDANGVWNYTFASTEGQYLLDSSMWSKCYEPKHIVEWHVTLFSILLAFAAIEFILCLIQVINGVLGGTCGYCCSRQQINMAIVSWRLSNQLDIFLSAGCSSNQSPGQEPSITVIREASPRN", "length": 242 }, "evidence": [ { "id": "A0A4X1T081", "url": "https://omabrowser.org/oma/group/A0A4X1T081/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E7FBS4-1", "protein_name": "Transmembrane 4 L6 family member 1", "gene_name": "tm4sf1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MCSTGFARSLGFALVPLATCCIVANVLLFFPDGQLNYVQEQHVTQYVWFFMGIGGGGLAMLIPACVFLGMGKCVYSCGTESCAMCGSVIAALIGLAGSGYCFLISGLALLRGPFCFTRLGWLYPFEQDEGRYLFARERWSECIQPNHIVEWNVTLLSILLGLSTLEFLICFLQFISGLVNAVCRPCCYKQEYSLNA", "length": 196 }, "evidence": [ { "id": "A0A4X1T081", "url": "https://omabrowser.org/oma/group/A0A4X1T081/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P30408-1", "protein_name": "Transmembrane 4 L6 family member 1", "gene_name": "TM4SF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MCYGKCARCIGHSLVGLALLCIAANILLYFPNGETKYASENHLSRFVWFFSGIVGGGLLMLLPAFVFIGLEQDDCCGCCGHENCGKRCAMLSSVLAALIGIAGSGYCVIVAALGLAEGPLCLDSLGQWNYTFASTEGQYLLDTSTWSECTEPKHIVEWNVSLFSILLALGGIEFILCLIQVINGVLGGICGFCCSHQQQYDC", "length": 202 }, "evidence": [ { "id": "A0A4X1T081", "url": "https://omabrowser.org/oma/group/A0A4X1T081/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q64302-1", "protein_name": "Transmembrane 4 L6 family member 1", "gene_name": "Tm4sf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCYVKCARYIGYSLVWAAVFCIVANALLYFPNGETKYATEDHLSRFVWYFAGIVGGGLLMLLPAFVFIGMDEEDCCGCCGYENYGKRCSMLSSVLAALIGIVGSAYCVIVASLGLAEGPKCSDAHGVWNYTFASTEGQYLLNSSMWSKCYEPKHIVEWHVTLFSILLAFAAVEFILCLIQVINGMLGGLCGYCCSRQQQYNC", "length": 202 }, "evidence": [ { "id": "A0A4X1T081", "url": "https://omabrowser.org/oma/group/A0A4X1T081/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T081", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T081" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T081", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T081" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 }, { "start_pos": 159, "end_pos": 161 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TCM5-1", "uniprot_ac": "A0A4X1TCM5", "uniprot_id": "A0A4X1TCM5_PIG", "mass": { "chemical_mass": 102945.0, "monoisotopic_mass": 102945.0 }, "refseq": { "ac": "XP_013847311", "name": "zinc finger protein 62 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013847311" }, "gene_names": [ { "name": "ZFP62", "type": "recommended", "evidence": [ { "id": "A0A4X1TCM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5" } ] }, { "name": "ZFP62", "type": "synonym", "evidence": [ { "id": "XP_013847311", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013847311" } ] } ], "protein_names": [ { "name": "ZFP62 zinc finger protein", "type": "synonym", "evidence": [ { "id": "A0A4X1TCM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 62 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_013847311", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013847311" } ] } ], "function": [ { "annotation": "May play a role in differentiating skeletal muscle.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5#function" }, { "database": "UniProtKB", "id": "ARBA00059052", "url": "https://www.uniprot.org/uniprotkb/ARBA00059052#function" }, { "database": "UniProtKB", "id": "A0A8D1BNS9", "url": "https://www.uniprot.org/uniprotkb/A0A8D1BNS9#function" }, { "database": "UniProtKB", "id": "F1RH10", "url": "https://www.uniprot.org/uniprotkb/F1RH10#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZFP62", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5", "locus": { "chromosome": "2", "start_pos": 57863075, "end_pos": 57849157, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014539", "url": "https://www.ensembl.org/id/ENSSSCG00000014539" } ] } } ], "crossref": [ { "id": "A0A4X1TCM5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TCM5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014539", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014539", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524927", "url": "https://www.ncbi.nlm.nih.gov/gene/100524927", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524927", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524927", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GNTESKW", "url": "https://omabrowser.org/oma/group/GNTESKW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TCM5", "url": "https://www.orthodb.org/?gene=A0A4X1TCM5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8D1BNS9", "url": "https://www.orthodb.org/?gene=A0A8D1BNS9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RH10", "url": "https://www.orthodb.org/?gene=F1RH10", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24376", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24376", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24376:SF77", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24376:SF77", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013847311", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013847311", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TCM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TCM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1BNS9", "url": "https://www.uniprot.org/uniprotkb/A0A8D1BNS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1BNS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1BNS9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RH10", "url": "https://www.uniprot.org/uniprotkb/F1RH10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RH10-1", "url": "https://www.uniprot.org/uniprotkb/F1RH10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSHLKTRGTEDEDSTENYEIGNAESLWPKVEGLHKNHMQESKVGETYDWDSKIENQVEKPEGKRMKEDKSGTREKIGKTKNTANIKIEHEDEASEKSLCLSSKHVTHQTVPIEQKSSEQGTCVENINGNSHPSLQQKTTAVKKSHNCDECGKSFKYNSRLVQHKIMHTGEKRYECDDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLAVHKSIHPGKKAHECKECGKSFSYNSLLLQHKTIHTGERPYVCDVCGKTFRNNSGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINHKSVHPGEKPYKCDECEKAFVTYRTLINHKKIHLGEKPYKCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCEKVFRNNSSLKVHKRIHTGEKPYECDVCGKAYISHSSLINHKSTHPGKTPYTCDECGKAFFSSRTLISHKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYVCDWCGKAFRNSSGLTVHKRIHTGEKPYGCDQCEKAYISHSSLINHKSIHSGQQPYNCECGKSFNYRSVLDQHKRIHTGKKPYRCNECGKAFNIRSNLTKHKRTHTGEESLNVTSLGSHSGTLQKRTHEVGNVLDGTKMSKSL", "length": 904, "header": "tr|A0A4X1TCM5-1|A0A4X1TCM5_PIG Isoform 1 of ZFP62 zinc finger protein OS=Sus scrofa OX=9823 GN=ZFP62 PE=3 SV=1 CANONICAL=A0A4X1TCM5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TCM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5/entry#A0A4X1TCM5-1", "sequence": { "sequence": "MSHLKTRGTEDEDSTENYEIGNAESLWPKVEGLHKNHMQESKVGETYDWDSKIENQVEKPEGKRMKEDKSGTREKIGKTKNTANIKIEHEDEASEKSLCLSSKHVTHQTVPIEQKSSEQGTCVENINGNSHPSLQQKTTAVKKSHNCDECGKSFKYNSRLVQHKIMHTGEKRYECDDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLAVHKSIHPGKKAHECKECGKSFSYNSLLLQHKTIHTGERPYVCDVCGKTFRNNSGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINHKSVHPGEKPYKCDECEKAFVTYRTLINHKKIHLGEKPYKCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCEKVFRNNSSLKVHKRIHTGEKPYECDVCGKAYISHSSLINHKSTHPGKTPYTCDECGKAFFSSRTLISHKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYVCDWCGKAFRNSSGLTVHKRIHTGEKPYGCDQCEKAYISHSSLINHKSIHSGQQPYNCECGKSFNYRSVLDQHKRIHTGKKPYRCNECGKAFNIRSNLTKHKRTHTGEESLNVTSLGSHSGTLQKRTHEVGNVLDGTKMSKSL", "length": 904, "header": "tr|A0A4X1TCM5-1|A0A4X1TCM5_PIG Isoform 1 of ZFP62 zinc finger protein OS=Sus scrofa OX=9823 GN=ZFP62 PE=3 SV=1 CANONICAL=A0A4X1TCM5-1" }, "locus": { "chromosome": "2", "start_pos": 57861944, "end_pos": 57849261, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089028.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089028.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071555.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071555.1" } ] } }, { "isoform_ac": "A0A8D1BNS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5/entry#A0A8D1BNS9-1", "sequence": { "sequence": "MQESKVGETYDWDSKIENQVEKPEGKRMKEDKSGTREKIGKTKNTANIKIEHEDEASEKSLCLSSKHVTHQTVPIEQKSSEQGTCVENINGNSHPSLQQKTTAVKKSHNCDECGKSFKYNSRLVQHKIMHTGEKRYECDDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLAVHKSIHPGKKAHECKECGKSFSYNSLLLQHKTIHTGERPYVCDVCGKTFRNNSGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINHKSVHPGEKPYKCDECEKAFVTYRTLINHKKIHLGEKPYKCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCEKVFRNNSSLKVHKRIHTGEKPYECDVCGKAYISHSSLINHKSTHPGKTPYTCDECGKAFFSSRTLISHKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYVCDWCGKAFRNSSGLTVHKRIHTGEKPYGCDQCEKAYISHSSLINHKSIHSGQQPYNCECGKSFNYRSVLDQHKRIHTGKKPYRCNECGKAFNIRSNLTKHKRTHTGEESLNVTSLGSHSGTLQKRTHEVGNVLDGTKMSKSL", "length": 867, "header": "tr|A0A8D1BNS9-1|A0A4X1TCM5_PIG Computationally mapped isoform of ZFP62 zinc finger protein OS=Sus scrofa OX=9823 GN=ZFP62 PE=3 SV=1 CANONICAL=A0A4X1TCM5-1" }, "locus": { "chromosome": "2", "start_pos": 57861944, "end_pos": 57859344, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090163.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090163.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063304.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063304.1" } ] } }, { "isoform_ac": "F1RH10-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5/entry#F1RH10-1", "sequence": { "sequence": "MEPDVMGAGFRAQIKVSHLKTRGTEDEDSTENYEIGNAESLWPKVEGLHKNHMQESKVGETYDWDSKIENQVEKPEGKRMKEDKSGTREKIGKTKNTANIKIEHEDEASEKSLCLSSKHVTHQTVPIEQKSSEQGTCVENINGNSHPSLQQKTTAVKKSHNCDECGKSFKYNSRLVQHKIMHTGEKRYECDDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLAVHKSIHPGKKAHECKECGKSFSYNSLLLQHKTIHTGERPYVCDVCGKTFRNNSGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINHKSVHPGEKPYKCDECEKAFVTYRTLINHKKIHLGEKPYKCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCEKVFRNNSSLKVHKRIHTGEKPYECDVCGKAYISHSSLINHKSTHPGKTPYTCDECGKAFFSSRTLISHKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYVCDWCGKAFRNSSGLTVHKRIHTGEKPYGCDQCEKAYISHSSLINHKSIHSGQQPYNCECGKSFNYRSVLDQHKRIHTGKKPYRCNECGKAFNIRSNLTKHKRTHTGEESLNVTSLGSHSGTLQKRTHEVGNVLDGTKMSKSL", "length": 919, "header": "tr|F1RH10-1|A0A4X1TCM5_PIG Computationally mapped isoform of ZFP62 zinc finger protein OS=Sus scrofa OX=9823 GN=ZFP62 PE=3 SV=3 CANONICAL=A0A4X1TCM5-1" }, "locus": { "chromosome": "2", "start_pos": 57861944, "end_pos": 57857520, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015889.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015889.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015472.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015472.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1BNS9", "url": "https://www.uniprot.org/uniprotkb/A0A8D1BNS9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524927", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524927", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GD67-1", "protein_name": "Zinc finger protein 62", "gene_name": "Zfp62", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDEDSAKKNENNSSADSQCPNVEIFHKDHMQNSNIDDTFGWVEKQLERPKWKIMKEDKSSIREKIDKPKNTANVKIEQDDETSEKSFYSSTDTMHQTVPTEPKCTEQGEHTENVNGSLHPTPQQNSAADKKSHKCDECGKSFKYNSRLVQHKIMHTGEKRYECDDCRGTFRSSSSLRVHKRIHTGEKPYKCDECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDICGKAFSYSSGLAVHKSIHPGKKAHECKDCGKSFSYNSLLLQHKTIHTGERPYVCDVCGKTFRNNSGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINHKSVHPGEKPFKCDECEKAFITYRTLLNHKKIHLGEKPYKCDVCEKSFNYTSLLSQHKRVHTREKPFECDRCEKVFRNNSSLKVHKRIHTGEKPYECDICGKAYISHSSLINHKSTHPGKTPYTCDECGKAFFSSRTLISHKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYICDWCGKAFRNSSGLTVHKRIHTGEKPYGCDECEKAYISHSSLINHKSVHRGKQPYNCECGKSFNYRSVLDQHKRIHTGKKPYRCNDCGKAFNIRSNLTKHKRIHTGEESLNMANMESHSGTFQKRIYYEGGNALDGTRMQMPMWEAEPAKSQRNQIEEKLYECKNF", "length": 917 }, "evidence": [ { "id": "A0A4X1TCM5", "url": "https://omabrowser.org/oma/group/A0A4X1TCM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MXU3-1", "protein_name": "ZFP62 zinc finger protein", "gene_name": "ZFP62", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQESKVGETCDWDSKVENQMDKPEGKRMKEDKSGFREKIGKARNTANIKTEQEDEASEKSLHLSSKYVTHQTVPIEQKNSEQVKCVESINGNSHPSLQQKASAVKKSHKCDDCGKSFKYNSRLIQHKIMHTGEKRYECDDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLAVHKSIHPGKKAHECKECGKSFSYNSLLLQHRTIHTGERPYVCDVCGKTFRNNSGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINHKSVHPGEKPYKCDECEKAFITYRTLINHKKIHLGEKPYKCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCEKVFRNNSSLKVHKRIHTGEKPYKCDVCGKAYISHSSLINHKSTHPGKTPYTCDECGKAFFSNRTLISHKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYVCDGCGKAFRNSSGLTVHKRIHTGEKPYGCDECGKAYISHSSLINHKSVHSGQQPYNCECGKSFNYRSVLDQHKRIHTGKKLYQCNECGKAFNIRSNLTKHKRIHTGGEYLSVTNMGSHSGTSQKRTHEGGNALDGTRMSMSL", "length": 867 }, "evidence": [ { "id": "A0A4X1TCM5", "url": "https://omabrowser.org/oma/group/A0A4X1TCM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8C827-1", "protein_name": "Zinc finger protein 62", "gene_name": "Zfp62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYLKTTMEDEESSKKNENDSNADSQCPSVGFFHKDHMQKSKTGDTCDLFPKWKILKEGKSSIREMIDTHTNAANIKLEQDDETSEKSFYPSTNTMHQTIPTEPNCTKQGEHTENINGNVHPAHIADKKLHKCDECGKSFKYNSRLVQHKIMHTGEKRYECDDCRGTFRSSSSLRVHKRIHTGEKPYKCDECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDTCGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDICGKAFSYSSGLAVHKSIHPGKKAHECKDCGKSFSYNSLLLQHKTIHTGERPYVCDVCGKTFRNNSGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHMGEKPYKCSYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINHKSVHPGEKPFKCDECEKAFITYRTLLNHKKIHLGEKPYKCDVCEKSFNYTSLLSQHKRVHTREKPFECDRCEKVFRNNSSLKVHKRIHTGEKPYECDICGKAYISHSSLINHKSTHPGKTSYTCDECGKAFFSSRTLISHKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYVCDWCGKAFRNSSGLTVHKRIHTGEKPYGCDECEKAYISHSSLINHKSVHRGKQPYNCECGKSFNYRSVLDQHKRIHTGKKPYRCNDCGKAFNIRSNLTKHKRIHTGEESLNMANMESHSGTFQKMIYYEGGNSLDGTRMQMPVWEAEHAKSQRNQIEEKLYEYNNF", "length": 914 }, "evidence": [ { "id": "A0A4X1TCM5", "url": "https://omabrowser.org/oma/group/A0A4X1TCM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NB50-1", "protein_name": "Zinc finger protein 62 homolog", "gene_name": "ZFP62", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSHLKTSTEDEEPTEEYENVGNAASKWPKVEDPMPESKVGDTCVWDSKVENQQKKPVENRMKEDKSSIREAISKAKSTANIKTEQEGEASEKSLHLSPQHITHQTMPIGQRGSEQGKRVENINGTSYPSLQQKTNAVKKLHKCDECGKSFKYNSRLVQHKIMHTGEKRYECDDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLAVHKSIHPGKKAHECKECGKSFSYNSLLLQHRTIHTGERPYVCDVCGKTFRNNAGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINHKSVHPGEKPFKCDECEKAFITYRTLTNHKKVHLGEKPYKCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCEKVFRNNSSLKVHKRIHTGERPYECDVCGKAYISHSSLINHKSTHPGRTPHTCDECGKAFFSSRTLISHKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYVCDRCGKAFRNSSGLTVHKRIHTGEKPYECDECGKAYISHSSLINHKSVHQGKQPYNCECGKSFNYRSVLDQHKRIHTGKKPYRCNECGKAFNIRSNLTKHKRTHTGEESLNVIYVGSYSGTSQKRTYEGGNALDGGRMRMPL", "length": 900 }, "evidence": [ { "id": "A0A4X1TCM5", "url": "https://omabrowser.org/oma/group/A0A4X1TCM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5" } ], "pmid": "" }, { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCM5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 268, "end_pos": 270, "annotation": "n_glycosylation_sequon" }, { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 351, "end_pos": 353, "annotation": "n_glycosylation_sequon" }, { "start_pos": 380, "end_pos": 382, "annotation": "n_glycosylation_sequon" }, { "start_pos": 464, "end_pos": 466, "annotation": "n_glycosylation_sequon" }, { "start_pos": 519, "end_pos": 521, "annotation": "n_glycosylation_sequon" }, { "start_pos": 548, "end_pos": 550, "annotation": "n_glycosylation_sequon" }, { "start_pos": 631, "end_pos": 633, "annotation": "n_glycosylation_sequon" }, { "start_pos": 660, "end_pos": 662, "annotation": "n_glycosylation_sequon" }, { "start_pos": 661, "end_pos": 663, "annotation": "n_glycosylation_sequon" }, { "start_pos": 772, "end_pos": 774, "annotation": "n_glycosylation_sequon" }, { "start_pos": 858, "end_pos": 860, "annotation": "n_glycosylation_sequon" }, { "start_pos": 873, "end_pos": 875, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1TCM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCM5" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 145, "end_pos": 172, "start_aa": "His", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 239, "end_pos": 241 }, { "start_pos": 268, "end_pos": 270 }, { "start_pos": 296, "end_pos": 298 }, { "start_pos": 351, "end_pos": 353 }, { "start_pos": 380, "end_pos": 382 }, { "start_pos": 464, "end_pos": 466 }, { "start_pos": 519, "end_pos": 521 }, { "start_pos": 548, "end_pos": 550 }, { "start_pos": 631, "end_pos": 633 }, { "start_pos": 660, "end_pos": 662 }, { "start_pos": 661, "end_pos": 663 }, { "start_pos": 772, "end_pos": 774 }, { "start_pos": 858, "end_pos": 860 }, { "start_pos": 873, "end_pos": 875 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TYP0-1", "uniprot_ac": "A0A4X1TYP0", "uniprot_id": "A0A4X1TYP0_PIG", "mass": { "chemical_mass": 56558.0, "monoisotopic_mass": 56558.0 }, "refseq": { "ac": "XP_020952928", "name": "zinc finger protein 331 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952928" }, "gene_names": [ { "name": "ZNF331", "type": "recommended", "evidence": [ { "id": "A0A4X1TYP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TYP0" } ] }, { "name": "ZNF331", "type": "synonym", "evidence": [ { "id": "XP_020952928", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952928" } ] } ], "protein_names": [ { "name": "Zinc finger protein 331", "type": "synonym", "evidence": [ { "id": "A0A4X1TYP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TYP0/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 331 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020952928", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952928" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation. 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Zinc finger protein 331 OS=Sus scrofa OX=9823 GN=ZNF331 PE=3 SV=1 CANONICAL=A0A4X1TYP0-1" }, "locus": { "chromosome": "6", "start_pos": 56605656, "end_pos": 56599403, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094385.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094385.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077692.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077692.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZHY5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZHY5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110261294", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261294", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q9NQX6-1", "protein_name": "Zinc finger protein 331", "gene_name": "ZNF331", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"monoisotopic_mass": 59644.0 }, "refseq": { "ac": "XP_005663052", "name": "copine-3 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663052" }, "gene_names": [ { "name": "CPNE3", "type": "recommended", "evidence": [ { "id": "A0A4X1UBQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ] }, { "name": "CPNE3", "type": "synonym", "evidence": [ { "id": "XP_005663052", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663052" } ] } ], "protein_names": [ { "name": "Copine-3", "type": "recommended", "evidence": [ { "id": "A0A4X1UBQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4/entry#names_and_taxonomy" } ] }, { "name": "Copine III", "type": "synonym", "evidence": [ { "id": "A0A4X1UBQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4/entry#names_and_taxonomy" } ] }, { "name": "copine-3 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_005663052", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663052" } ] } ], "function": [ { "annotation": "Calcium-dependent phospholipid-binding protein that plays a role in ERBB2-mediated tumor cell migration in response to growth factor heregulin stimulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5A7", "url": "https://www.uniprot.org/uniprotkb/A0A287A5A7#function" }, { "database": "UniProtKB", "id": "ARBA00058857", "url": "https://www.uniprot.org/uniprotkb/ARBA00058857#function" }, { "database": "UniProtKB", "id": "A0A287BL47", "url": "https://www.uniprot.org/uniprotkb/A0A287BL47#function" }, { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4#function" }, { "database": "UniProtKB", "id": "A0A287B2X0", "url": "https://www.uniprot.org/uniprotkb/A0A287B2X0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CPNE3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4", "locus": { "chromosome": "4", "start_pos": 50276426, "end_pos": 50345366, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006135", "url": "https://www.ensembl.org/id/ENSSSCG00000006135" } ] } } ], "crossref": [ { "id": "A0A4X1UBQ4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1UBQ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006135", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006135", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01459", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01459", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04047", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04047", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04048", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04048", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152057", "url": "https://www.ncbi.nlm.nih.gov/gene/100152057", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037768", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037768", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152057", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152057", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EMAAQCV", "url": "https://omabrowser.org/oma/group/EMAAQCV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287B2X0", "url": "https://www.orthodb.org/?gene=A0A287B2X0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1UBQ4", "url": "https://www.orthodb.org/?gene=A0A4X1UBQ4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10857", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10857", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10857:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10857:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07002", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07002", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1483206", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483206", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005663052", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663052", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZNB9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZNB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNB9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5A7", "url": "https://www.uniprot.org/uniprotkb/A0A287A5A7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5A7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA73", "url": "https://www.uniprot.org/uniprotkb/A0A287AA73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA73-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA73-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B2X0", "url": "https://www.uniprot.org/uniprotkb/A0A287B2X0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B2X0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B2X0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BL47", "url": "https://www.uniprot.org/uniprotkb/A0A287BL47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BL47-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BL47-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UBQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCT7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCT7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCT7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAQCVTKVELNISCDNLLDKDVGSKSDPLCVLFLNTSGQQWYEVERTERIKNCLNPKFSKTFIIDYYFEVVQKLKFGIYDIDNKTIELSDDDFLGEFECTLGQIVSSKKLTRPLVLKNGRPAGKGSITISAEEIKDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGNWLMVHRTEVIKNNLNPVWRPFKISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQTTMTKLKEASRNSPIEFECINEKKKQKKKSYKNSGIISVKQCEITVECTFLDYVMGGCQLNFTVGVDFTGSNGDPRSPNSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPINFNPSNPYCNGIQGIIEAYRACLPQIKLYGPTNFSPIINHVAKFAAAATQQHTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDADGGSLRSPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNAYKLLPPKNPAAK", "length": 533, "header": "tr|A0A4X1UBQ4-1|A0A4X1UBQ4_PIG Isoform 1 of Copine-3 OS=Sus scrofa OX=9823 GN=CPNE3 PE=1 SV=1 CANONICAL=A0A4X1UBQ4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZNB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4/entry#A0A286ZNB9-1", "sequence": { "sequence": "MAAQCVTKVELNISCDNLLDKDVGSKSDPLCVLFLNTSGQQWYEVERTERIKNCLNPKFSKTFIIDYYFEVVQKLKFGIYDIDNKTIELSDDDFLGEFECTLGQIVSSKKLTRPLVLKNGRPAGKGSITISAEEIKDNRVVLFEMEARKLDNKVECYDYDNDGSHDLIGTFQTTMTKLKEASRNSPIEFECINEKKKQKKKSYKNSGIISVKQCEITVECTFLDYVMGGCQLNFTVGVDFTGSNGDPRSPNSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPINFNPSNPYCNGIQGIIEAYRACLPQIKLYGPTNFSPIINHVAKFAAAATQQHTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDADGGSLRSPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNAYKLLPPKNPAAK", "length": 475, "header": "tr|A0A286ZNB9-1|A0A4X1UBQ4_PIG Computationally mapped isoform of Copine-3 OS=Sus scrofa OX=9823 GN=CPNE3 PE=1 SV=1 CANONICAL=A0A4X1UBQ4-1" }, "locus": { "chromosome": "4", "start_pos": 50317209, "end_pos": 50279970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045951.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045951.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032952.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032952.2" } ] } }, { "isoform_ac": "A0A287A5A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4/entry#A0A287A5A7-1", "sequence": { "sequence": "MLEMAAQCVTKVELNISCDNLLDKDVGSKSDPLCVLFLNTSGQQWYEVERTERIKNCLNPKFSKTFIIDYYFEVVQKLKFGIYDIDNKTIELSDDDFLGEFECTLGQIVSSKKLTRPLVLKNGRPAGKGSITISAEEIKDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGNWLMVHRTEVIKNNLNPVWRPFKISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQTTMTKLKEASRNSPIEFECINEKKKQKKKSYKNSGIISVKQCEITVECTFLDYVMGGCQLNFTVGVDFTGSNGDPRSPNSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPINFNPSNPYCNGIQGIIEAYRACLPQIKLYGPTNFSPIINHVAKFAAAATQQHTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDADGGSLRSPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNAYKLLPPKNPAAK", "length": 536, "header": "tr|A0A287A5A7-1|A0A4X1UBQ4_PIG Computationally mapped isoform of Copine-3 OS=Sus scrofa OX=9823 GN=CPNE3 PE=1 SV=1 CANONICAL=A0A4X1UBQ4-1" }, "locus": { "chromosome": "4", "start_pos": 50317803, "end_pos": 50279970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044483.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044483.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039129.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039129.2" } ] } }, { "isoform_ac": "A0A287AA73-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4/entry#A0A287AA73-1", "sequence": { "sequence": "MAAQCVTKVELNISCDNLLDKDVGSKSDPLCVLFLNTSGQQWYEVERTERIKNCLNPKFSKTFIIDYYFEVVQKLKFGIYDIDNKTIELSDDDFLGEFECTLGQIVSSKKLTRPLVLKNGRPAGKGSITPVHFNKITLTSSRNSPIEFECINEKKKQKKKSYKNSGIISVKQCEITVECTFLDYVMGGCQLNFTVGVDFTGSNGDPRSPNSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPINFNPSNPYCNGIQGIIEAYRACLPQIKLYGPTNFSPIINHVAKFAAAATQQHTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDADGGSLRSPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNAYKLLPPKNPAAK", "length": 434, "header": "tr|A0A287AA73-1|A0A4X1UBQ4_PIG Computationally mapped isoform of Copine-3 OS=Sus scrofa OX=9823 GN=CPNE3 PE=1 SV=1 CANONICAL=A0A4X1UBQ4-1" }, "locus": { "chromosome": "4", "start_pos": 50317209, "end_pos": 50279970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063640.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063640.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040698.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040698.2" } ] } }, { "isoform_ac": "A0A287B2X0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4/entry#A0A287B2X0-1", "sequence": { "sequence": "MDKTIFKCLLLLSMCVDWKEEFSGFKARRRKDKFAELEMAAQCVTKVELNISCDNLLDKDVGSKSDPLCVLFLNTSGQQWYEVERTERIKNCLNPKFSKTFIIDYYFEVVQKLKFGIYDIDNKTIELSDDDFLGEFECTLGQIVSSKKLTRPLVLKNGRPAGKGSITISAEEIKDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGNWLMVHRTEVIKNNLNPVWRPFKISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQTTMTKLKEASRNSPIEFECINEKKKQKKKSYKNSGIISVKQCEITVECTFLDYVMGGCQLNFTVGVDFTGSNGDPRSPNSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPINFNPSNPYCNGIQGIIEAYRACLPQIKLYGPTNFSPIINHVAKFAAAATQQHTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDADGGSLRSPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNAYKLLPPKNPAAK", "length": 571, "header": "tr|A0A287B2X0-1|A0A4X1UBQ4_PIG Computationally mapped isoform of Copine-3 OS=Sus scrofa OX=9823 GN=CPNE3 PE=1 SV=1 CANONICAL=A0A4X1UBQ4-1" }, "locus": { "chromosome": "4", "start_pos": 50336642, "end_pos": 50279970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047480.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047480.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050799.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050799.2" } ] } }, { "isoform_ac": "A0A287BL47-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4/entry#A0A287BL47-1", "sequence": { "sequence": "MAAQCVTKVERTERIKNCLNPKFSKTFIIDYYFEVVQKLKFGIYDIDNKTIELSDDDFLGEFECTLGQIVSSKKLTRPLVLKNGRPAGKGSITISAEEIKDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGNWLMVHRTEVIKNNLNPVWRPFKISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQTTMTKLKEASRNSPIEFECINEKKKQKKKSYKNSGIISVKQCEITVECTFLDYVMGGCQLNFTVGVDFTGSNGDPRSPNSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPINFNPSNPYCNGIQGIIEAYRACLPQIKLYGPTNFSPIINHVAKFAAAATQQHTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDADGGSLRSPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNAYKLLPPKNPAAK", "length": 497, "header": "tr|A0A287BL47-1|A0A4X1UBQ4_PIG Computationally mapped isoform of Copine-3 OS=Sus scrofa OX=9823 GN=CPNE3 PE=1 SV=1 CANONICAL=A0A4X1UBQ4-1" }, "locus": { "chromosome": "4", "start_pos": 50317209, "end_pos": 50279970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061183.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061183.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056799.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056799.1" } ] } }, { "isoform_ac": "A0A4X1UBQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4/entry#A0A4X1UBQ4-1", "sequence": { "sequence": "MAAQCVTKVELNISCDNLLDKDVGSKSDPLCVLFLNTSGQQWYEVERTERIKNCLNPKFSKTFIIDYYFEVVQKLKFGIYDIDNKTIELSDDDFLGEFECTLGQIVSSKKLTRPLVLKNGRPAGKGSITISAEEIKDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGNWLMVHRTEVIKNNLNPVWRPFKISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQTTMTKLKEASRNSPIEFECINEKKKQKKKSYKNSGIISVKQCEITVECTFLDYVMGGCQLNFTVGVDFTGSNGDPRSPNSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPINFNPSNPYCNGIQGIIEAYRACLPQIKLYGPTNFSPIINHVAKFAAAATQQHTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDADGGSLRSPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNAYKLLPPKNPAAK", "length": 533, "header": "tr|A0A4X1UBQ4-1|A0A4X1UBQ4_PIG Isoform 1 of Copine-3 OS=Sus scrofa OX=9823 GN=CPNE3 PE=1 SV=1 CANONICAL=A0A4X1UBQ4-1" }, "locus": { "chromosome": "4", "start_pos": 50317209, "end_pos": 50279970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006728.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006728.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006545.2", "url": "https://www.ensembl.org/id/ENSSSCP00000006545.2" } ] } }, { "isoform_ac": "A0A8W4FCT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4/entry#A0A8W4FCT7-1", "sequence": { "sequence": "MAAQCVTKVELNISCDNLLDKDVGSKSDPLCVLFLNTSGQQWYEVERTERIKNCLNPKFSKTFIIDYYFEVVQKLKFGIYDIDNKTIELSDDDFLGEFECTLGQIVSSKKLTRPLVLKNGRPAGKGSITVTTRYSSLPIEFECINEKKKQKKKSYKNSGIISVKQCEITVECTFLDYVMGGCQLNFTVGVDFTGSNGDPRSPNSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPINFNPSNPYCNGIQGIIEAYRACLPQIKLYGPTNFSPIINHVAKFAAAATQQHTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDADGGSLRSPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNAYKLLPPKNPAAK", "length": 427, "header": "tr|A0A8W4FCT7-1|A0A4X1UBQ4_PIG Computationally mapped isoform of Copine-3 OS=Sus scrofa OX=9823 GN=CPNE3 PE=1 SV=1 CANONICAL=A0A4X1UBQ4-1" }, "locus": { "chromosome": "4", "start_pos": 50317209, "end_pos": 50279970, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097197.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097197.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077214.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077214.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FCT7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCT7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152057", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152057", "resource": "KEGG Pathway" }, { "id": "R-SSC-1483206", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483206", "resource": "Reactome", "description": "Glycerophospholipid biosynthesis" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YMC1-1", "protein_name": "Copine-3", "gene_name": "CPNE3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAQCVTKVELTIACTNLLDKDVGSKSDPLCVLLQNTSGQQWYEVDRTERIKNSLNPKFSKKFLIDYYFELVQKLKFGIYDIDNKTIELSDDDFLGEFECTLGQIVSSKTLTKPLVLKNGRPAGKGSITITAEEVKDNRVVLFEVEARKLDNKDFFGKSDPYLEFHKQTTDGNWVMVHRTEVIKNNLNPVWRPFKISLNSLCYTDMDKPIKVECYDYDSDGSHDVIGSFQTTMSKLKEASRSSPVEFECINEKKRQKKKNYKNSGIVSVKHCEIIVECTFLDYVMGGCQLNFTVGIDFTGSNGDPRSPDSLHYLSPDGVNEYLTAIWSVGMVIQDYDTDKMFPVFGFGAQIPPSYQVSHEFPINFNPSNPFCNGIQGIVDAYRACLPQVRLYGPTNFSPIINHVARFAAAATQQQTASQYFILLIITDGVITDLDQTRTAIVNASKLPMSIIIVGVGGADFDAMEFLDGDNGVLRSSSGEPAVRDIVQFVPFRKFQNSPKEALAQCVLAEIPQQVVNYFSTFKLQPPKNPAANNRGQRE", "length": 539 }, "evidence": [ { "id": "A0A4X1UBQ4", "url": "https://omabrowser.org/oma/group/A0A4X1UBQ4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZLA3-1", "protein_name": "Copine-3", "gene_name": "Cpne3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVANSLPHTHTHHTHTHTHTHTHTHTHTHTHTHTHNHLGPSHKLRPRPGRARTPPTSPAPPVPVKPLRSHRLAVLLAGSPPSLDFLGDLVAEDMAAQCVTKVELNISCNSLLDTDLTSKSDPLCVLFLNTSGQQWYEVERTERIKNSLNPKFSKTFVIDYYFEVVQKLKFGIYDIDNKTIELSDDDFLGECEVTLGQIVSSKKLTRPLVLKNGKPAGQGSITILAEEIKDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGHWLMVHRTEVIKNNLNPMWKPFKISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQTTMTKLKEASRSSPVEFECINEKKRQKKKSYKNSGVIVVKHCEITVECTFLDYIMGGCQLNFTVGVDFTGSNGDPSSPDSLHYISPNGVNEYLTAIWSVGLVVQDYDADKMFPAFGFGAQVPPQWQVSHEFPMNFNPSNPYCNGIQGIIEAYRTCLPQIRLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVITDLDQTRQAIVSAAKLPMSIIIVGVGGADFSAMEFLDGDNGSLRAPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNTYRLLPPKNPAVK", "length": 628 }, "evidence": [ { "id": "A0A4X1UBQ4", "url": "https://omabrowser.org/oma/group/A0A4X1UBQ4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1Q9D2-1", "protein_name": "Copine-3", "gene_name": "cpne3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MATACVSKVELTVSCENLLDMDVGSKSDPLCVLLMNTSGNQWFEVDRTERVKNCLNPKFAKKFVVDYHFEIVQKLRFAVYDIDNKTIDLSDDDFLGELECSLGQIVSSSRLSRPLLLKNKKPAGKGVIMISAEEIKDNRVVNFEVEARKLDNKDFFGKSDPFLEFYRQTETGWQLAHRTEVVKNNLNPCWRPFKIPLRSLCAGDMEKPIKVECHDYDNDGSHDLIGIFETNMKRLEAASRSAPAEFECINSKKKQKKKSYKNSGVVSVKVCQITREYTFLDYIMGGCQINFTVGIDFTGSNGDPRSPDSLHYISPQGVNEYLSAIWSVGLVVQDYDSDKMFPAFGFGAQIPPSWQVSHEFPLNFNPTNPFCAGVEGVIEAYRMCLPQVKLYGPTNFAPIINHMARFAQQALQQKTASQYFVLLIITDGVITDMDQTRGAIVAASRLPMSIIIVGVGKADFTDMEILDGDDGRLKSVTGEPAVRDIVQFVPFRKFQNSPKEELAKCVLAEVPGQVVTFFNMMKYPPPNSNTPVDASNGVKN", "length": 540 }, "evidence": [ { "id": "A0A4X1UBQ4", "url": "https://omabrowser.org/oma/group/A0A4X1UBQ4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3I9G3-1", "protein_name": "Copine-3", "gene_name": "Cpne3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAQCVTKVELHVSCDNLLDTDLTSKSDPLCVLFLNTSGQQWYEVERTERIKNSLSPKFSKTFIIDYYFEVVQKLKFGIYDIDNKTIELSDDDFLGEFEVTLGQIVSSKKLTRPLVLRNGRPAGKGTITISAEEIKDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGNWLMVHRTEVIKNNLNPVWKPFKISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQTTMTKLKEASRNSPVEYECINEKKRQKKKSYKNSGVISVKHCEITVECTFLDYIMGGCQLNFTVGVDFTGSNGDPSSSDSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQVPPQWQVSHEFPMNFNPSNPYCNGIQGIIEAYRTCLPQIRLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVITDLDETRHAIVNASKLPMSIIIVGVGGADFSAMEFLDGDGGSLRSPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNTYKLLPPKNPAAK", "length": 533 }, "evidence": [ { "id": "A0A4X1UBQ4", "url": "https://omabrowser.org/oma/group/A0A4X1UBQ4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O75131-1", "protein_name": "Copine-3", "gene_name": "CPNE3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAQCVTKVALNVSCANLLDKDIGSKSDPLCVLFLNTSGQQWYEVERTERIKNCLNPQFSKTFIIDYYFEVVQKLKFGVYDIDNKTIELSDDDFLGECECTLGQIVSSKKLTRPLVMKTGRPAGKGSITISAEEIKDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGNWLMVHRTEVVKNNLNPVWRPFKISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQTTMTKLKEASRSSPVEFECINEKKRQKKKSYKNSGVISVKQCEITVECTFLDYIMGGCQLNFTVGVDFTGSNGDPRSPDSLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVITDLDETRQAIVNASRLPMSIIIVGVGGADFSAMEFLDGDGGSLRSPLGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNTYKLLPPKNPATKQQKQ", "length": 537 }, "evidence": [ { "id": "A0A4X1UBQ4", "url": "https://omabrowser.org/oma/group/A0A4X1UBQ4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5XQC7-1", "protein_name": "Protein BONZAI 3", "gene_name": "BON3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGGCLSGDVKGGKQAIGGVQQRPTSSTIANNAAHNDAVDFFFRSRGQYPLFSQIELTLSASNLLDCDITSKSDPMAVMYLRKKDGRLEEIGRTEVILNNLNPKWIEKITVSFQFEAVQTLVFHVYDVDTRYHNVPVKTLKLKDQDFLGEGTCVLSEIMTRQNRTLTLTLTGNVRAGVNRNLGTLSIQAEETVASKTVAEINFRCVNLDNKDLFSKSDPFLRISRVVETSAAVPICRTEVVDNNLNPMWRPVCLTMQQFGSKDTPLVIECLDFNTSGNHELIGKTEKSVAELERLCLQKEAANFVYPSLSHGRNKVLKGQLIVDRYVEKVQYSFLDYISSGFELNFMVAVDFTASNGDPRTPSSLHYIDPSGRLNSYQQAIMEVGEVIQFYDSDKRFPAWGFGGRTSDGSVSHAFNLNGASYGDEVVGVEGIMVAYASALRNVSLAGPTLFSNVVDKAAHTASQSLSQNSPKYFVLLIITDGVLTDMAGTVDALVRASDLPLSVLIVGVGNTDFKQMEMLDADNGRRLESSTGRIATRDIVQFVPMKDIHSGLVSVVQALLEELPGQFLTYVRSRKINPIGAPAI", "length": 584 }, "evidence": [ { "id": "A0A4X1UBQ4", "url": "https://omabrowser.org/oma/group/A0A4X1UBQ4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7YXU4-1", "protein_name": "Copine-A", "gene_name": "cpnA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLKPPTSKVELRIKCHKILDKDTLSKSDPRASVYEKDRAGQFRLIGKTETIQNQLNPEFKTPIVIDYRFEEIQVLKFEIHDVDKNDEDFIGDASCTLTSILSKPGQTVCLQLLTKSGKHAGSMTVIAEEIKNTLQTIKFNLIGKKFDKKDLFGAGCDPYLIISRKVPSTNTFVKIYESQVQKGTLNPVFSGIEMKLEELCGGDMQREIKFEFYDWDRIGKHDYIGEFHTNAQELLQPNQAFNVINSHKQEKKSGYKNSGTVSVSDAVIEREYNFLEYIMGGCQMNLIVGIDCTASNGDSNDPNSLHYKNAQGLNQYANAICSVGNVIVPYTTTPLIPVYGFGGIMPGQSEVSHCFPMTLNASNTLCCGVNGVLDCYYDNISKIQLHGPTYFAPLINMAARYASQGQSQSNQKYTILMIITDGEILDADNTIDAIVKSSGLPLSIIIVGVGNANFTNMNILDGDDAALQSGGVRAERDIVQFVAMRDYLNRPNELAAEVLREIPTQFLSFMKKYKFRPNPPPPPPPVIIGAPPQYDNPTTTTTATSPSTGIDLNKGSNVGLNLTKTESSPSPSGGAGIDLNKGSVVDITKGVSNVSLEKN", "length": 600 }, "evidence": [ { "id": "A0A4X1UBQ4", "url": "https://omabrowser.org/oma/group/A0A4X1UBQ4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BT60-1", "protein_name": "Copine-3", "gene_name": "Cpne3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAQCVTKVELNVSCNNLLDADVTSKSDPLCVLFLNTSGHQWYEVERTERIKNSLNPKFSKTFVIDYYFEVVQKLKFGIYDIDNKTIELSDDDFLGECEVTLGQIVSSKKLTRPLVLKNGKPAGKGSITISAEEIKDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGHWLMVHRTEVIKNNLNPMWKPFKISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQTTMTKLKEASRSSPVEYECINEKKRQKKKSYKNSGVISVKHCEITVECTFLDYIMGGCQLNFTVGVDFTGSNGDPSSPDSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQVPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRTCLPQIRLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDGDGGSLRAPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNTYKLLPPKNPAVK", "length": 533 }, "evidence": [ { "id": "A0A4X1UBQ4", "url": "https://omabrowser.org/oma/group/A0A4X1UBQ4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "calcium-dependent phospholipid binding", "id": "GO:0005544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005544", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "pmid": "" }, { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "pmid": "" }, { "name": "calcium-dependent protein binding", "id": "GO:0048306", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048306", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "pmid": "" }, { "name": "receptor tyrosine kinase binding", "id": "GO:0030971", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030971", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "pmid": "" }, { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "positive regulation of cell migration", "id": "GO:0030335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030335", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "pmid": "" }, { "name": "cellular response to calcium ion", "id": "GO:0071277", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071277", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "pmid": "" }, { "name": "cellular response to growth factor stimulus", "id": "GO:0071363", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071363", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "pmid": "" }, { "name": "ERBB2 signaling pathway", "id": "GO:0038128", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038128", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UBQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 291, "end_pos": 293, "annotation": "n_glycosylation_sequon" }, { "start_pos": 36, "end_pos": 38, "annotation": "n_glycosylation_sequon" }, { "start_pos": 396, "end_pos": 398, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1UBQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBQ4" }, { "id": "PS50004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 115, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 }, { "start_pos": 291, "end_pos": 293 }, { "start_pos": 36, "end_pos": 38 }, { "start_pos": 396, "end_pos": 398 }, { "start_pos": 84, "end_pos": 86 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UHR1-1", "uniprot_ac": "A0A4X1UHR1", "uniprot_id": "A0A4X1UHR1_PIG", "mass": { "chemical_mass": 47836.0, "monoisotopic_mass": 47836.0 }, "refseq": {}, "gene_names": [ { "name": "RBMS3", "type": "recommended", "evidence": [ { "id": "A0A4X1UHR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1" } ] } ], "protein_names": [ { "name": "RNA binding motif single stranded interacting protein 3", "type": "synonym", "evidence": [ { "id": "A0A4X1UHR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UHR1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RBMS3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1", "locus": { "chromosome": "13", "start_pos": 16462743, "end_pos": 14970324, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036381", "url": "https://www.ensembl.org/id/ENSSSCG00000036381" } ] } } ], "crossref": [ { "id": "ENSSSCG00000036381", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036381", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12472", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12472", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12475", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12475", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002343", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002343", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034406", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034406", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LGTTGTX", "url": "https://omabrowser.org/oma/group/LGTTGTX/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24012", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24012", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZPB8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZPB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPB8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALU4", "url": "https://www.uniprot.org/uniprotkb/A0A287ALU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALU4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGZ7", "url": "https://www.uniprot.org/uniprotkb/A0A287BGZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UHR1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UHR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R977", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R977", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R977-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R977-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9E8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9E8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9E8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRG0", "url": "https://www.uniprot.org/uniprotkb/F1RRG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRG0-1", "url": "https://www.uniprot.org/uniprotkb/F1RRG0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNHSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAAPPVSTYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHASAYSYQQSKP", "length": 437, "header": "tr|A0A4X1UHR1-1|A0A4X1UHR1_PIG Isoform 1 of RNA binding motif single stranded interacting protein 3 OS=Sus scrofa OX=9823 GN=RBMS3 PE=4 SV=1 CANONICAL=A0A4X1UHR1-1" }, "isoforms": [ { "isoform_ac": "A0A286ZPB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1/entry#A0A286ZPB8-1", "sequence": { "sequence": "MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNHSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAAPPVSTYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHASAYSYQQSKP", "length": 421, "header": "tr|A0A286ZPB8-1|A0A4X1UHR1_PIG Computationally mapped isoform of RNA binding motif single stranded interacting protein 3 OS=Sus scrofa OX=9823 GN=RBMS3 PE=4 SV=1 CANONICAL=A0A4X1UHR1-1" }, "locus": { "chromosome": "13", "start_pos": 16456297, "end_pos": 15712145, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048999.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048999.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033310.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033310.1" } ] } }, { "isoform_ac": "A0A287ALU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1/entry#A0A287ALU4-1", "sequence": { "sequence": "MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNHSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAAPPVSTYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTYMTAAAPMQGTYIPQYTPVPPTAVSIETINNTEECLSETRP", "length": 391, "header": "tr|A0A287ALU4-1|A0A4X1UHR1_PIG Computationally mapped isoform of RNA binding motif single stranded interacting protein 3 OS=Sus scrofa OX=9823 GN=RBMS3 PE=4 SV=3 CANONICAL=A0A4X1UHR1-1" }, "locus": { "chromosome": "13", "start_pos": 16456335, "end_pos": 15712145, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055592.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055592.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044864.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044864.3" } ] } }, { "isoform_ac": "A0A287BGZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1/entry#A0A287BGZ7-1", "sequence": { "sequence": "MGKRLDQPQMYPQYTYYYPHYLQTKSYAPAPHPMAPPSPSTNSSSNHSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAAPPVSTYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHASAYSYQQSKP", "length": 436, "header": "tr|A0A287BGZ7-1|A0A4X1UHR1_PIG Computationally mapped isoform of RNA binding motif single stranded interacting protein 3 OS=Sus scrofa OX=9823 GN=RBMS3 PE=4 SV=2 CANONICAL=A0A4X1UHR1-1" }, "locus": { "chromosome": "13", "start_pos": 16456297, "end_pos": 15712145, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047429.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047429.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055335.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055335.2" } ] } }, { "isoform_ac": "A0A4X1UHR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1/entry#A0A4X1UHR1-1", "sequence": { "sequence": "MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNHSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAAPPVSTYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHASAYSYQQSKP", "length": 437, "header": "tr|A0A4X1UHR1-1|A0A4X1UHR1_PIG Isoform 1 of RNA binding motif single stranded interacting protein 3 OS=Sus scrofa OX=9823 GN=RBMS3 PE=4 SV=1 CANONICAL=A0A4X1UHR1-1" }, "locus": { "chromosome": "13", "start_pos": 16456297, "end_pos": 15712145, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095511.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095511.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076067.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076067.1" } ] } }, { "isoform_ac": "A0A5G2R977-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1/entry#A0A5G2R977-1", "sequence": { "sequence": "MEMDVEGVSPREDPIPRSQGAGGACQAPPQPPQPQPQPPPPPQQPAPDEPPGESAGTEDSDDPDPEARPDSEKGESKRTSSSKSSGVPSYSRWSSFQPHQSSSTVRAYQTSKSRVTMSPGFSSQWNSSQPAWNTYSFPRASLHYQTHATYTYCTGHPASYAPAPHPMAPPSPSTNSSSNHSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAAPPVSTYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHASAYSYQQSKP", "length": 569, "header": "tr|A0A5G2R977-1|A0A4X1UHR1_PIG Computationally mapped isoform of RNA binding motif single stranded interacting protein 3 OS=Sus scrofa OX=9823 GN=RBMS3 PE=4 SV=2 CANONICAL=A0A4X1UHR1-1" }, "locus": { "chromosome": "13", "start_pos": 16456297, "end_pos": 14970523, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089875.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089875.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070674.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070674.2" } ] } }, { "isoform_ac": "A0A8W4F9E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1/entry#A0A8W4F9E8-1", "sequence": { "sequence": "MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNHSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAAPPVSTYQGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHASAYSYQQSKP", "length": 420, "header": "tr|A0A8W4F9E8-1|A0A4X1UHR1_PIG Computationally mapped isoform of RNA binding motif single stranded interacting protein 3 OS=Sus scrofa OX=9823 GN=RBMS3 PE=4 SV=1 CANONICAL=A0A4X1UHR1-1" }, "locus": { "chromosome": "13", "start_pos": 16456297, "end_pos": 15712145, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104347.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104347.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076019.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076019.1" } ] } }, { "isoform_ac": "F1RRG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1/entry#F1RRG0-1", "sequence": { "sequence": "MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNHSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKVRMGEVKESQDPTWPPVPGSQQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAAPPVSTYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHASAYSYQQSKP", "length": 458, "header": "tr|F1RRG0-1|A0A4X1UHR1_PIG Computationally mapped isoform of RNA binding motif single stranded interacting protein 3 OS=Sus scrofa OX=9823 GN=RBMS3 PE=4 SV=4 CANONICAL=A0A4X1UHR1-1" }, "locus": { "chromosome": "13", "start_pos": 16456297, "end_pos": 15712145, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012289.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012289.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011971.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011971.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 388, "start_aa": "Thr", "end_pos": 388, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr388", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F9E8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9E8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LKR6-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 3 isoform X1", "gene_name": "Rbms3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGKRLDQPQMYPQYTYYCPQYLQTKQSYAPAPHPMAPPSPSTNSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAALQNGFYSSPYSLATNRMIPQTSITPFIAASPVSTYQVQSTSWTPHLPYIMQPTGAVITPTMDHPMSMQPTNIVGPLTQQMNHLSLGTAGTIQSQDRIMVLHQLLCQYMTAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDSSGQQQQLAVDTPNEHAPAYSFQQSKP", "length": 431 }, "evidence": [ { "id": "A0A4X1UHR1", "url": "https://omabrowser.org/oma/group/A0A4X1UHR1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I6GKY7-1", "protein_name": "RNA binding motif, single stranded interacting protein 3", "gene_name": "Rbms3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEMDVEGVSPRPEPIPRSQGAGGACQAPPQPPQPQPQPQQQLAQDEVPSESAGAEDSDDPEARPNGERGESKSNATVRAYQSSKSRVTMSPGFSSQWSNSQPAWNTYSFPRASLHYQSHASYTYCTGHPVQSYAPAPHPMAPPSPSTNSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQSQNKHTQNGRPWPREGEAGMALTYDPTAALQNGFYSSPYSLATNRMIPQTSITPFIAASPVSTYQVQSTSWTPHLPYIMQPTGAVITPTMDHPMSMQPTNIVGPLTQQMNHLSLGTAGTIQSQDRIMVLHQLLCQYMTAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDSSGQQQQLAVDTPSEHAPAYSFQQSKP", "length": 536 }, "evidence": [ { "id": "A0A4X1UHR1", "url": "https://omabrowser.org/oma/group/A0A4X1UHR1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QGV3-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 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"MGKRLDQPQMYPQYTYYYPHYLQTKQSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSKYTQNGRPWPREGEAGMALTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTIQSQDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHAPAYSYQQSKP", "length": 437 }, "evidence": [ { "id": "A0A4X1UHR1", "url": "https://omabrowser.org/oma/group/A0A4X1UHR1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BWL5-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 3", "gene_name": "Rbms3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGKRLDQPQMYPQYTYYCPQYLQTKQSYAPAPHPMAPPSPSTNSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQGQSKHTQNGRPWPREGEAGMALTYDPTAALQNGFYSSPYSLATNRMIPQTSITPFIAASPVSTYQVQSTSWTPHLPYIMQPTGAVITPAVDHPMSMQPTNIVGPLTQQMNHLSLGTAGTIQSQDRIMVLHQLLCQYMTAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDSSGQQQQLAVDTPSEHAPAYSFQQSKP", "length": 431 }, "evidence": [ { "id": "A0A4X1UHR1", "url": "https://omabrowser.org/oma/group/A0A4X1UHR1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UHR1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1" } ], "pmid": "" }, { "name": "poly(A) binding", "id": "GO:0008143", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008143", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UHR1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1" } ], "pmid": "" }, { "name": "poly(U) RNA binding", "id": "GO:0008266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008266", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UHR1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1" } ], "pmid": "" }, { "name": "mRNA 3'-UTR AU-rich region binding", "id": "GO:0035925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035925", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UHR1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1" } ], "pmid": "" }, { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UHR1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UHR1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { 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Classification" ] }, { "id": "A0A4X1T6E2", "url": "https://www.orthodb.org/?gene=A0A4X1T6E2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13060", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13060", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13060:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13060:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07093", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07093", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003359278", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003359278", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZPZ8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZPZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T6E2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6E2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T6E2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6E2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEENMKLATVEDTVEYRLFLISDELRDPEKHREILQNYIEKIMTQFAPMLVPYIWQNQPFNLKYKPGKGGVPAHMFGMTKFGDNIEDEWFIVYIVKQITKEFPELVARIEDNDGEFLLIEAADFLPKWLDPDNSANRVFFHHGELCIIPAPKHPGEISWLPTAPPTMLQALNIISTHPEKILASESIRAAVNKRIKGYPEKIKASLHQAHCFLPAGIVAVLKQRPRLVAAGVQAFYLRDPIDLRACRIFKTFLPETRVMTSVTFTKCLYAQLVQQRFVPDRRSGYKLPPPSHPQYRAHELGMKLAHGFEILCSKCSPHFSDSKKSLVTTSPLWAGFLESLKKNDYFKGLIEGSAQYQERLEMAKNYFQLSINQPESSLAVSPGEEILTLLHTVSYDMEELKKEAANLPPEDDDQWLDLSPDQLDQLLQEAAGKKEPEPVSKGREENYDLTQVSESMKAFISKVSSHKGAELPREPSEAPITFDADLFLNYFDKILGSKPHESDSDDPDEEDSECLDSDDDLEIETQEPGEEASVKGTLDDLKSYMAQMDQELAHTSIGKSFTTQKQMEPLSRTTSNNSDEEDSGAGGSVMTPVDVDLNLVSNILESYSSQAGLAGPASNLLQSMGVQLPDNADHRPTSKPTKD", "length": 643, "header": "tr|A0A4X1T6E2-1|A0A4X1T6E2_PIG Isoform 1 of Ecdysoneless cell cycle regulator OS=Sus scrofa OX=9823 GN=ECD PE=4 SV=1 CANONICAL=A0A4X1T6E2-1" }, "isoforms": [ { "isoform_ac": "A0A286ZPZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6E2/entry#A0A286ZPZ8-1", "sequence": { "sequence": "MEENMKLATVEDTVEYRLFLISDELRDPEKHREILQNYIEKIMTQFAPMLVPYIWQNQPFNLKYKPGKGGVPAHMFGMTKFGDNIEDEWFIVYIVKQITKEFPELVARIEDNDGEFLLIEAADFLPKWLDPDNSANRVFFHHGELCIIPAPKHPGEISWLPTAPPTMLQALNIISTHPEKILASESIRAAVNKRIKGYPEKIKASLHQAHCFLPAGIVAVLKQRPRLVAAGVQAFYLRDPIDLRACRIFKTFLPETRVMTSAHGFEILCSKCSPHFSDSKKSLVTTSPLWAGFLESLKKNDYFKGLIEGSAQYQERLEMAKNYFQLSINQPESSLAVSPGEEILTLLHTVSYDMEELKKEAANLPPEDDDQWLDLSPDQLDQLLQEAAGKKEPEPVSKGREENYDLTQVSESMKAFISKVSSHKGAELPREPSEAPITFDADLFLNYFDKILGSKPHESDSDDPDEEDSECLDSDDDLEIETQEPGEEASVKGTLDDLKSYMAQMDQELAHTSIGKSFTTQKQMEPLSRTTSNNSDEEDSGAGGSVMTPVDVDLNLVSNILESYSSQAGLAGPASNLLQSMGVQLPDNADHRPTSKPTKD", "length": 600, "header": "tr|A0A286ZPZ8-1|A0A4X1T6E2_PIG Computationally mapped isoform of Ecdysoneless cell cycle regulator OS=Sus scrofa OX=9823 GN=ECD PE=4 SV=1 CANONICAL=A0A4X1T6E2-1" }, "locus": { "chromosome": "14", "start_pos": 75991053, "end_pos": 75958928, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063049.2", "url": "https://www.ensembl.org/id/ENSSSCT00000063049.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033680.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033680.1" } ] } }, { "isoform_ac": "A0A4X1T6E2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6E2/entry#A0A4X1T6E2-1", "sequence": { "sequence": "MEENMKLATVEDTVEYRLFLISDELRDPEKHREILQNYIEKIMTQFAPMLVPYIWQNQPFNLKYKPGKGGVPAHMFGMTKFGDNIEDEWFIVYIVKQITKEFPELVARIEDNDGEFLLIEAADFLPKWLDPDNSANRVFFHHGELCIIPAPKHPGEISWLPTAPPTMLQALNIISTHPEKILASESIRAAVNKRIKGYPEKIKASLHQAHCFLPAGIVAVLKQRPRLVAAGVQAFYLRDPIDLRACRIFKTFLPETRVMTSVTFTKCLYAQLVQQRFVPDRRSGYKLPPPSHPQYRAHELGMKLAHGFEILCSKCSPHFSDSKKSLVTTSPLWAGFLESLKKNDYFKGLIEGSAQYQERLEMAKNYFQLSINQPESSLAVSPGEEILTLLHTVSYDMEELKKEAANLPPEDDDQWLDLSPDQLDQLLQEAAGKKEPEPVSKGREENYDLTQVSESMKAFISKVSSHKGAELPREPSEAPITFDADLFLNYFDKILGSKPHESDSDDPDEEDSECLDSDDDLEIETQEPGEEASVKGTLDDLKSYMAQMDQELAHTSIGKSFTTQKQMEPLSRTTSNNSDEEDSGAGGSVMTPVDVDLNLVSNILESYSSQAGLAGPASNLLQSMGVQLPDNADHRPTSKPTKD", "length": 643, "header": "tr|A0A4X1T6E2-1|A0A4X1T6E2_PIG Isoform 1 of Ecdysoneless cell cycle regulator OS=Sus scrofa OX=9823 GN=ECD PE=4 SV=1 CANONICAL=A0A4X1T6E2-1" }, "locus": { "chromosome": "14", "start_pos": 75991053, "end_pos": 75958928, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079410.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079410.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062231.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062231.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZPZ8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPZ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157830", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157830", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XZQ6-1", "protein_name": "Ecdysoneless cell cycle regulator", "gene_name": "ECD", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEGCGRAAPAEDAVRYRLFAAPGAGGEERLRRCADGIAVRLAPLLAAYIWQRQRFRLRYVPPCGDTPEHIGGSTLFGDNVEDEWFIVYLVREISRAFPELAARVDDNDGEFLLIEAADFLPKWLSPENSENRVFFYKGELHIIPLSETEEQQWEELPAEGLTISEALTLLSAHSEEFLAAEPIRRAVYKRIDGYPEKIQASYHRAHCYLPAGIVAVLKQRPSLVAAAVQAFYLRDPSDLRACRSFHTFPPEERVMTTVTFTKCLYAQLVQQKFAPDRRSGYTLPPPSHPQYKAHELGMKLAHGFEILCSKCSKVSPDLKRNVFRGPLWERYLHSLKEKDYFKGEMEGSAKYLELLRMAEHYFQQSVNKPESSVEMSPGDEILTLLRTTTFDVKEFEREATCLPPEDDDSWLEITPDALDQMLKEATGGSQPSSNEEEQKYDLEAVAESMKAFVSKVSTHKGAEVPWSPDETNVTFDVDSFTKALDRILGADSEELDSDDLDEEEEFNFSDEDDDDLDAENQREDEEVSPNELIGSLKSYMDEMDRELAQTNVGKSFTTQKKRASSAKAAPSQNAGLGSEEEDAELTPVDVDMNLVTNLLESYSAQAGLAGPTSNILQSMGVYLPENTDRIGSSEGAAE", "length": 638 }, "evidence": [ { "id": "A0A4X1T6E2", "url": "https://omabrowser.org/oma/group/A0A4X1T6E2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZA55-1", "protein_name": "Ecdysoneless cell cycle regulator", "gene_name": "Ecd", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGKGRLAMVEDAVEYHLFLIPDEARDTDGHRESLQKYIEQIMTQFAPILVPYIWQNQPFNLKYKPAKGGVPAHMYGMTKFGDNIEDEWFIVYIIKQITKTFPELVARIEDNDGEFLLIEAADFLPKWLDPDNSANRVFFHRGELCIIPVPRKSERIPWLPTTPPTIQQALSIISAHPEAILASESVQAAVDRRISGYPEKIGASLHRAHCFLPAGIVAVLKQRPRLVSAAVQAFYLRDPIDLRACRVFKTFLPETRIMASVTFTKCLYAQLVQQKFVPDRRSGYGLPPPSHPRYRAHELGMKLAHGFEILCSKCSPHFSDSRKSLVTASPLWASFLESLRRNDYFKGLMEGSAQYQERLEMAKNYFQLSIHRPESSLAMSPGEEILTLLETLPFDIAELKTEEADLPPEDDDQWLDLSPDQLDQLLQDAAGRKVSQPGPQKEEQQNCDVGQVSDSMKAFISKVSTHKGAELPRDPSEAPITFDADSFLNYFDKILGTKPQESDSDDQDEDDLECLDSDDDLGLEAQESESLKGALGSLKSYMAQMDQELAHTCMGKSFSTRKQLDPPSQTANDNSDEEDSGAGDCTVEAVDVDLNLVSNILESYSSQAGLAGPASNLLHSMGVRLPDNADHHSSQ", "length": 636 }, "evidence": [ { "id": "A0A4X1T6E2", "url": "https://omabrowser.org/oma/group/A0A4X1T6E2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3I2P4-1", "protein_name": "Protein ecdysoneless homolog isoform X1", "gene_name": "Ecd", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGNMKLAMVEDAVEYHLFLIPDKARDTDEPKEILQKYIERIMTQFAPILVPYIWQNQPFNLKYKPAKGGVPAHMYGMTKFGDNIEDEWFIVYVIKQITKAFPELVARIEDNDGEFLLIEAADFLPKWLDPDNSANRVFFHHGELCIIPVPRKSERIPWLPTTPPTIQQALDIISAHPEAVLASEPIQAAVDRRIRGYPEKIEASLHRAHCFLPAGIVAVLKQRPRLVSAAVQAFYLRDPIDLRACRVFKTFLPETRIMASVTFTKCLYAQLLQQKFVPDRRSGYGLPPPSHPQFRAHELGMKLAHGFEILCSKCSPHFSDSRKSLVTASPLWASFLESLKRNDYFKGLIEGSAQYQERLEMAKNYFQLSIHRPESSVAMSPGEEILTVLQTLPFDVEELKKEGAALPPEDDDQWLDLSPDQLDQLLQDTTGRKESQPISQKEEQKNYDVAQVSDSMKAFISKVSTHKGAELPRDPSEAPITFDADSFLNYFDKILGTKSQESDSDDLDEDDFECLDSDDDLDFETQDSESLKGALGSLKSYMAQMDQELAHTSMGKSFSTRKQMKKDLPSQTANDNSDEEDSGAGDCVVETVDVDLNLVSNVLESYSSQAGLAGPASNLLHSMGVRLPDNADHIPQGSQ", "length": 640 }, "evidence": [ { "id": "A0A4X1T6E2", "url": "https://omabrowser.org/oma/group/A0A4X1T6E2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O95905-1", "protein_name": "Protein ecdysoneless homolog", "gene_name": "ECD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEETMKLATMEDTVEYCLFLIPDESRDSDKHKEILQKYIERIITRFAPMLVPYIWQNQPFNLKYKPGKGGVPAHMFGVTKFGDNIEDEWFIVYVIKQITKEFPELVARIEDNDGEFLLIEAADFLPKWLDPENSTNRVFFCHGELCIIPAPRKSGAESWLPTTPPTIPQALNIITAHSEKILASESIRAAVNRRIRGYPEKIQASLHRAHCFLPAGIVAVLKQRPRLVAAAVQAFYLRDPIDLRACRVFKTFLPETRIMTSVTFTKCLYAQLVQQRFVPDRRSGYRLPPPSDPQYRAHELGMKLAHGFEILCSKCSPHFSDCKKSLVTASPLWASFLESLKKNDYFKGLIEGSAQYRERLEMAENYFQLSVDWPESSLAMSPGEEILTLLQTIPFDIEDLKKEAANLPPEDDDQWLDLSPDQLDQLLQEAVGKKESESVSKEEKEQNYDLTEVSESMKAFISKVSTHKGAELPREPSEAPITFDADSFLNYFDKILGPRPNESDSDDLDDEDFECLDSDDDLDFETHEPGEEASLKGTLDNLKSYMAQMDQELAHTCISKSFTTRNQVEPVSQTTDNNSDEEDSGTGESVMAPVDVDLNLVSNILESYSSQAGLAGPASNLLQSMGVQLPDNTDHRPTSKPTKN", "length": 644 }, "evidence": [ { "id": "A0A4X1T6E2", "url": "https://omabrowser.org/oma/group/A0A4X1T6E2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CS74-1", "protein_name": "Protein ecdysoneless homolog", "gene_name": "Ecd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEGSGKLAMVEDAVEYHLFLIPDKARGTEEHREILQKYIERIMTQFAPILVPYIWQNQPFNLKYKPAKGGVPAHMYGMTKFGDNIEDEWFIVYVIKQITKEFPELVARVEDNDGEFLLIEAADFLPKWLDPDNSANRVFFHHGELCIIPVPRKSERIPWLPMTPPTIQQALSIISAHPEAVLASESIQAAVDRRVSGYPERVEASLHRAHCFLPAGIVAVLKQQPRLLSAAVQAFYLRDPIDLRACRVFKTFLPETRIMASVTFTKCLYAQLVQQKFVPDRRSGYGLPPPSHPQYRAYELGMKLAHGFEILCSKCSPHFSDSRKSLVTASPLWASFLESLKRNDYFKGLMDGSAQYQERLEMAKNYFQLSIHRPESSLAMSPGEEILTVLQTQPFDVAELKTEEADLPPEDDDQWLDLSPDQLDQLLQDAAGRKESQPGPQKEELQNYDVAQVSDSMKAFISKVSSHKGAELPRDPSEAPITFDADSFLNYFDKILGAKPQESDSEDDPGEEDVEGVDSDDDVGFEAQESESLKGALGSLKSYMARMDQELAHTSMGRSFTTRERLNKDPPSHTANDNSDEEDSGAGDCAVEAVDVDLNLISNILESYSSQAGLAGPASNLLHSMGVRLPDNADHNPQVSQ", "length": 641 }, "evidence": [ { "id": "A0A4X1T6E2", "url": "https://omabrowser.org/oma/group/A0A4X1T6E2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LSM5-1", "protein_name": "Protein ecdysoneless homolog", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSKPSSSPFFSETTSRLQDETVFFSLFPDSSLSSAALQSLHLEIIDFVSPFTSPYIWQHEPFSLSIALSSSCACTNTAIPHLHGKLKYGDNLEDEWFAVFLLFRISAAFPSNSIRVWDTDGEFLLIEAAFHLPRWLNPETSLNRVFIRGGDLHIVPRSRLPDPSLVASLRFLIERGNESRASDSVQSALKNRISDYPERAWRNMHRVRVRVPVSVAQVIRHEPFLISLAVEGFYDRDMDSMKHAAKMEKFLSKGREEKLVLVLVKMSRAMYGQLVQQKFQAPNCYPMPSVSDRDAFSEAELGMKIACGMEMMYQQRKKEGEDGKGISWSKYKDNLEKYGYFEGLLSGSKEYKRLMENAEEYHQKSSSFSRTRDIMSAPVRRIDEILALPYSEDDFKGQEVPASDNDSWLYDGEDELNSVLQERQKEMEFYNSKKERKNKGKEKQEAGSSSDANMNNFDLGDISKSMQQFMHKVSSYKGAEVPENRDFKEVSIDVDRFMKDIESMLGSQGRDEQADDDSDGSEGSSMDMDFDDVEDDSEGEESNEDAKESFEESYYGAMNEELKNSTLEKSFENVNQQHSSKQNEESSKTRDEKDDEFTPVDADFNLVKNLLESYSSQQGLPGPASNLLGLMGLQLPKDSGDKN", "length": 643 }, "evidence": [ { "id": "A0A4X1T6E2", "url": "https://omabrowser.org/oma/group/A0A4X1T6E2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9W032-1", "protein_name": "Protein ecdysoneless", "gene_name": "ecd", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSKIPGSNLEFVREEDFVEYYIFPKIPDNVQDEGALRKLMLQIRNEISAIVREKSLERSYLWHKDEFQLQVRLGGAEERLLNEETNPEEEAELGDLPPHFHGVTHYGDNISDEWFVVYLLTEITRARGDCIARVSDSDGEFLLIEAADALPDWASPETCEQRVYLVGGHLQLLQNSAASSQDKPLTMAMAVQRIRMNPTLYRCSQEIQSCIDARLKEYQIAQPHFSIHRQVLELPHSAAQLLKQKPRLLSSAVRAFCERDSLDIKALRTMRYFPPEATRVRTNVRFTRCLYAMLSHQQYLPEKRLGWHLTDPVSEPERYKEQLLGLKLASGLEILATQAKRVEGQQLEDLPAWRSYLRSLLSKGYFRDNIEGSAEYQELLNKAKVYFRGNQERFRTASRAGAEILDLLLHPAEAASEELRDEENNLQPSDSDEWLNISAEDLDSMLQDRYGPKKLYKPNGQMNAEEFTKQLAEFLDRQSNYEGIEHRGLEEPELDSDDDEPPPQANGSTGLTAKVKKNPSMRKACQRNSVIQPEEPDSTHVRNFLDFVIPEDNWDSTSEMSDYADEDDMESNLNALSGGGSVFPLDRQIQSYMEQMDRELAQTSVGKSFHGKKKTAPQADEDDFDDIEDFEPININVNTLRNMMDSYQSQVGGAGPVSNLFSAMGVGMSAVEDKEQKDISESAV", "length": 684 }, "evidence": [ { "id": "A0A4X1T6E2", "url": "https://omabrowser.org/oma/group/A0A4X1T6E2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T6E2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6E2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T6E2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6E2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T6E2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6E2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "histone acetyltransferase binding", "id": "GO:0035035", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035035", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T6E2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6E2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 576, "end_pos": 578, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 576, "end_pos": 578 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1SLB8-1", "uniprot_ac": "A0A4X1SLB8", "uniprot_id": "A0A4X1SLB8_PIG", "mass": { "chemical_mass": 39184.0, "monoisotopic_mass": 39184.0 }, "refseq": { "ac": "XP_003131019", "name": "calcium binding protein 39 like isoform 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131019" }, "gene_names": [ { "name": "CAB39L", "type": "recommended", "evidence": [ { "id": "A0A4X1SLB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB8" } ] }, { "name": "CAB39L", "type": "synonym", "evidence": [ { "id": "XP_003131019", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131019" } ] } ], "protein_names": [ { "name": "Calcium binding protein 39 like", "type": "synonym", "evidence": [ { "id": "A0A4X1SLB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB8/entry#names_and_taxonomy" } ] }, { "name": "calcium binding protein 39 like isoform 1", "type": "synonym", "evidence": [ { "id": "XP_003131019", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131019" } ] } ], "function": [ { "annotation": "Component of a complex that binds and activates STK11/LKB1. In the complex, required to stabilize the interaction between CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta) and STK11/LKB1.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZRA7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRA7#function" }, { "database": "UniProtKB", "id": "ARBA00025206", "url": "https://www.uniprot.org/uniprotkb/ARBA00025206#function" }, { "database": "UniProtKB", "id": "A0A4X1SLB8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SLB8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CAB39L", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB8", "locus": { "chromosome": "11", "start_pos": 18401235, "end_pos": 18313796, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009397", "url": "https://www.ensembl.org/id/ENSSSCG00000009397" } ] } } ], "crossref": [ { "id": "A0A4X1SLB8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SLB8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009397", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009397", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519104", "url": "https://www.ncbi.nlm.nih.gov/gene/100519104", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519104", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519104", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HYNEFTR", "url": "https://omabrowser.org/oma/group/HYNEFTR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SLB8", "url": "https://www.orthodb.org/?gene=A0A4X1SLB8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10182", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10182", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10182:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10182:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08569", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08569", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-380972", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380972", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003131019", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131019", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZRA7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZRA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRA7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SLB8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SLB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKMPLFSKSQKNPAEIVKILKDNMAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKEPPTEAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSTFQKERTDDEQFTDEKNYLIKQIRDLKKTTP", "length": 337, "header": "tr|A0A4X1SLB8-1|A0A4X1SLB8_PIG Isoform 1 of Calcium binding protein 39 like OS=Sus scrofa OX=9823 GN=CAB39L PE=1 SV=1 CANONICAL=A0A4X1SLB8-1" }, "isoforms": [ { "isoform_ac": "A0A286ZRA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB8/entry#A0A286ZRA7-1", "sequence": { "sequence": "MGPNPQPDEEVSKSLQAMKEILCGTNDKEPPTEAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSTFQKERTDDEQFTDEKNYLIKQIRDLKKTTP", "length": 306, "header": "tr|A0A286ZRA7-1|A0A4X1SLB8_PIG Computationally mapped isoform of Calcium binding protein 39 like OS=Sus scrofa OX=9823 GN=CAB39L PE=1 SV=2 CANONICAL=A0A4X1SLB8-1" }, "locus": { "chromosome": "11", "start_pos": 18399129, "end_pos": 18355129, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043747.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043747.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034007.3", "url": "https://www.ensembl.org/id/ENSSSCP00000034007.3" } ] } }, { "isoform_ac": "A0A4X1SLB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB8/entry#A0A4X1SLB8-1", "sequence": { "sequence": "MKKMPLFSKSQKNPAEIVKILKDNMAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKEPPTEAVAQLAQELYNSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSTFQKERTDDEQFTDEKNYLIKQIRDLKKTTP", "length": 337, "header": "tr|A0A4X1SLB8-1|A0A4X1SLB8_PIG Isoform 1 of Calcium binding protein 39 like OS=Sus scrofa OX=9823 GN=CAB39L PE=1 SV=1 CANONICAL=A0A4X1SLB8-1" }, "locus": { "chromosome": "11", "start_pos": 18399129, "end_pos": 18350500, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010296.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010296.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010028.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010028.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZRA7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRA7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519104", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519104", "resource": "KEGG Pathway" }, { "id": "R-SSC-380972", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380972", "resource": "Reactome", "description": "Energy dependent regulation of mTOR by LKB1-AMPK" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LKH8-1", "protein_name": "Calcium binding protein 39 like", "gene_name": "CAB39L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPLFSKSHKNPAEIVKILRDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTSDKEPPVEAVAQLSQELYNTGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRIPTVEYISAHPHILFMLLKGYEVPQIALRCGIMLRECIRHEPLAKIILFSNQFQDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLTMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSNFQKERTDDEQFTDEKNYLIKQIRDLKKVAP", "length": 334 }, "evidence": [ { "id": "A0A4X1SLB8", "url": "https://omabrowser.org/oma/group/A0A4X1SLB8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8C2MI44-1", "protein_name": "Calcium-binding protein 39-like", "gene_name": "Cab39l", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQSMKEILCGTNDKEPPTEPVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGARSPTVEYISSHPHILSMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKAAP", "length": 337 }, "evidence": [ { "id": "A0A4X1SLB8", "url": "https://omabrowser.org/oma/group/A0A4X1SLB8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1NV80-1", "protein_name": "Calcium binding protein 39 like", "gene_name": "CAB39L", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPLFSKSHKNPAEIVKILKENMAILEKQEKKTDKASEEVSKSLQAMKEILCGTTDKEPPTEVVAQLAQELYNSGLLVTLIANLQLIDFEGKKDVSQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYESPNIALRCGIMLRECIRHEPLAKIILFSEQFRDFFKYVEMSTFDIASDAFATFKDLLTRHKLLVADFMEQNYDTIFEDYEKLLHSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPNKTQPIVEILLKNQPKLIEFLSNFQKERTDDEQFTDEKNYLIKQIRDLKKPTA", "length": 334 }, "evidence": [ { "id": "A0A4X1SLB8", "url": "https://omabrowser.org/oma/group/A0A4X1SLB8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5XIJ7-1", "protein_name": "Calcium binding protein 39-like", "gene_name": "Cab39l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKELLCGAQDKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRCPTVEYICSHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKVILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFTIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKAAP", "length": 337 }, "evidence": [ { "id": "A0A4X1SLB8", "url": "https://omabrowser.org/oma/group/A0A4X1SLB8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9DB16-1", "protein_name": "Calcium-binding protein 39-like", "gene_name": "Cab39l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNDKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRCPTVEYISSHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFTIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKAAP", "length": 337 }, "evidence": [ { "id": "A0A4X1SLB8", "url": "https://omabrowser.org/oma/group/A0A4X1SLB8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FGK3-1", "protein_name": "Putative MO25-like protein At5g47540", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKGLFKSKPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYGNSEAEPVAEACAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIASDYLEANIDLMDVLIEGFENTDMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLTKNEDWFFADYNSKLLESSNYITRRQAIKLLGDILLDRSNSAVMTKYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIVNILVANRSKLLRLLADLKPDKEDERFEADKSQVLREIAALEPRDLA", "length": 343 }, "evidence": [ { "id": "A0A4X1SLB8", "url": "https://omabrowser.org/oma/group/A0A4X1SLB8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9H9S4-1", "protein_name": "Calcium-binding protein 39-like", "gene_name": "CAB39L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNEKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKTAP", "length": 337 }, "evidence": [ { "id": "A0A4X1SLB8", "url": "https://omabrowser.org/oma/group/A0A4X1SLB8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SLB8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein serine/threonine kinase activator activity", "id": "GO:0043539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043539", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SLB8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"uniprot_id": "A0A4X1TAP3_PIG", "mass": { "chemical_mass": 46773.0, "monoisotopic_mass": 46773.0 }, "refseq": { "ac": "XP_013853922", "name": "zinc finger protein 260 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853922" }, "gene_names": [ { "name": "ZNF260", "type": "recommended", "evidence": [ { "id": "A0A4X1TAP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAP3" } ] }, { "name": "ZNF260", "type": "synonym", "evidence": [ { "id": "XP_013853922", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853922" } ] } ], "protein_names": [ { "name": "Zinc finger protein 260", "type": "recommended", "evidence": [ { "id": "A0A4X1TAP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAP3/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 260 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013853922", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853922" } ] } ], "function": [ { "annotation": "Transcription factor that acts as a cardiac regulator and an effector of alpha1-adrenergic signaling. Binds to PE response elements (PERE) present in the promoter of genes such as ANF/NPPA and acts as a direct transcriptional activator of NPPA. Also acts as a cofactor with GATA4, a key cardiac regulator.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TAP3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAP3#function" }, { "database": "UniProtKB", "id": "ARBA00053488", "url": "https://www.uniprot.org/uniprotkb/ARBA00053488#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TAP3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAP3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF260", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAP3", "locus": { "chromosome": "6", "start_pos": 45880709, "end_pos": 45847013, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002930", "url": "https://www.ensembl.org/id/ENSSSCG00000002930" } ] } } ], "crossref": [ { "id": "A0A4X1TAP3", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TAP3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002930", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002930", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "106510533", "url": "https://www.ncbi.nlm.nih.gov/gene/106510533", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106510533", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106510533", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FSQKSHY", "url": "https://omabrowser.org/oma/group/FSQKSHY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZS90", "url": "https://www.orthodb.org/?gene=A0A286ZS90", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TAP3", "url": "https://www.orthodb.org/?gene=A0A4X1TAP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24379", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24379", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24379:SF122", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24379:SF122", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013853922", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853922", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZS90", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZS90-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS90-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TAP3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TAP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLESLQPESDLLQRDQIQTGEKPYECNECGKTFSLKQNITEHKKMHNGEKSHECTECGKVFSRVSSLTLHLRSHTGKKPYKCNKCGKPFTQKGNLLSHQKHHTGEKPYECGKASVQMPSFIKQQRNHIGNKPYACKECGKAFSGKSYLTEHEKIHTGEKPFECNQCGRAFSQKQYLVKHQNIHSGKKPFKCNECGKAFSQKENLIIHQRIHTGEKPYECKGCGKAFIQKSSLIRHQRSHTGEKPYICKECGKAFSGKSNLTEHEKIHIGEKPYKCNECGTIFRQKQYLIKHHNIHTGEKPYECNKCGKAFSRITSLIVHVRIHTGDKPYECKICGKAFCQSSSLTVHMRSHTGEKPYGCNECGKAFSQFSTLALHMRIHTGEKPYQCNQCGKAFSQKSHHIRHQRIHTH", "length": 409, "header": "tr|A0A4X1TAP3-1|A0A4X1TAP3_PIG Isoform 1 of Zinc finger protein 260 OS=Sus scrofa OX=9823 GN=ZNF260 PE=3 SV=1 CANONICAL=A0A4X1TAP3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZS90-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAP3/entry#A0A286ZS90-1", "sequence": { "sequence": "MLESLQPESDLLQRDQIQTGEKPYECNECGKTFSLKQNITEHKKMHNGEKSHECTECGKVFSRVSSLTLHLRSHTGKKPYKCNKCGKPFTQKGNLLSHQKHHTGEKPYECGKASVQMPSFIKQQRNHIGNKPYACKECGKAFSGKSYLTEHEKIHTGEKPFECNQCGRAFSQKQYLVKHQNIHSGKKPFKCNECGKAFSQKENLIIHQRIHTGEKPYECKGCGKAFIQKSSLIRHQRSHTGEKPYICKECGKAFSGKSNLTEHEKIHIGEKPYKCNECGTIFRQKQYLIKHHNIHTGEKPYECNKCGKAFSRITSLIVHVRIHTGDKPYECKICGKAFCQSSSLTVHMRSHTVIENKDCDCYIQKSMHVCMGNWQLIEVVITS", "length": 383, "header": "tr|A0A286ZS90-1|A0A4X1TAP3_PIG Computationally mapped isoform of Zinc finger protein 260 OS=Sus scrofa OX=9823 GN=ZNF260 PE=3 SV=1 CANONICAL=A0A4X1TAP3-1" }, "locus": { "chromosome": "6", "start_pos": 45876346, "end_pos": 45874635, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045961.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045961.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034330.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034330.2" } ] } }, { "isoform_ac": "A0A4X1TAP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAP3/entry#A0A4X1TAP3-1", "sequence": { "sequence": "MLESLQPESDLLQRDQIQTGEKPYECNECGKTFSLKQNITEHKKMHNGEKSHECTECGKVFSRVSSLTLHLRSHTGKKPYKCNKCGKPFTQKGNLLSHQKHHTGEKPYECGKASVQMPSFIKQQRNHIGNKPYACKECGKAFSGKSYLTEHEKIHTGEKPFECNQCGRAFSQKQYLVKHQNIHSGKKPFKCNECGKAFSQKENLIIHQRIHTGEKPYECKGCGKAFIQKSSLIRHQRSHTGEKPYICKECGKAFSGKSNLTEHEKIHIGEKPYKCNECGTIFRQKQYLIKHHNIHTGEKPYECNKCGKAFSRITSLIVHVRIHTGDKPYECKICGKAFCQSSSLTVHMRSHTGEKPYGCNECGKAFSQFSTLALHMRIHTGEKPYQCNQCGKAFSQKSHHIRHQRIHTH", "length": 409, "header": "tr|A0A4X1TAP3-1|A0A4X1TAP3_PIG Isoform 1 of Zinc finger protein 260 OS=Sus scrofa OX=9823 GN=ZNF260 PE=3 SV=1 CANONICAL=A0A4X1TAP3-1" }, "locus": { "chromosome": "6", "start_pos": 45875861, "end_pos": 45874635, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064022.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064022.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037009.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037009.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZS90", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS90" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106510533", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106510533", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q3ZCT1-1", "protein_name": "Zinc finger protein 260", "gene_name": "ZNF260", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MIGMLESLQHESDLLQHDQIHTGEKPYECNECRKTFSLKQNLVEHKKMHTGEKSHECTECGKVCSRVSSLTLHLRSHTGKKAYKCNKCGKAFSQKENFLSHQKHHTGEKPYECEKVSIQMPTIIRHQKNHTGTKPYACKECGKAFNGKAYLTEHEKIHTGEKPFECNQCGRAFSQKQYLIKHQNIHTGKKPFKCSECGKAFSQKENLIIHQRIHTGEKPYECKGCGKAFIQKSSLIRHQRSHTGEKPYTCKECGKAFSGKSNLTEHEKIHIGEKPYKCNECGTIFRQKQYLIKHHNIHTGEKPYECNKCGKAFSRITSLIVHVRIHTGDKPYECKVCGKAFCQSSSLTVHMRSHTGEKPYGCNECGKAFSQFSTLALHMRIHTGEKPYQCSECGKAFSQKSHHIRHQRIHTH", "length": 412 }, "evidence": [ { "id": "A0A4X1TAP3", "url": "https://omabrowser.org/oma/group/A0A4X1TAP3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q62513-1", "protein_name": "Zinc finger protein 260", "gene_name": "Znf260", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLESLQPESHLLHDEPDPGESVYECNECKETFSLEQNFVEHKKTHSGEKSPECTGCGEESSQASSLTLHLRSRPRRESYKCGECGKAFSQRGNFLSHQKQHTEERPSESKKTPVPMTTTVRNQRNTGNKPYACKECGKAFNGKSYLKEHEKIHTGEKPFECSQCGRAFSQKQYLIKHQNIHSGKKPFKCNECGKAFSQKENLIIHQRIHTGEKPYECKGCGKAFIQKSSLIRHQRSHTGEKPYTCKECGKAFSGKSNLTEHEKIHIGEKPYKCNECGTIFRQKQYLIKHHNIHTGEKPYECNKCGKAFSRITSLIVHVRIHTGDKPYECKICGKAFCQSSSLTVHMRSHTGEKPYGCNECGKAFSQFSTLALHMRIHTGEKPYQCSECGKAFSQKSHHIRHQRIHIH", "length": 407 }, "evidence": [ { "id": "A0A4X1TAP3", "url": "https://omabrowser.org/oma/group/A0A4X1TAP3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q62981-1", "protein_name": "Zinc finger protein 260", "gene_name": "Znf260", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLESLQPESELLHDEPDPGEKVYECDECRKTFSLEQHFVEHKKTHGGEKSPECTGCGEEFSKASSLTRHLRSRSRRESYKCGNCGRTFSQRGNFLSHQKQHAEERPSESKKTPVPMTTIVRNQRNAGNKPYACKECGKAFNGKSYLKEHEKIHTGEKPFECNQCGRAFSQKQYLIKHQNVHSGKKPFKCNECGKAFSQKENLIIHQRIHTGEKPYECKGCGKAFIQKSSLIRHQRSHTGEKPYTCKECGKAFSGKSNLTEHEKIHIGEKPYKCNECGTIFRQKQYLIKHHNIHTGEKPYECNKCGKAFSRITSLIVHVRIHTGDKPYECKVCGKAFCQSSSLTVHMRSHTGEKPYGCNECGKAFSQFSTLALHMRIHTGEKPYQCSECGKAFSQKSHHIRHQRIHIH", "length": 407 }, "evidence": [ { "id": "A0A4X1TAP3", "url": "https://omabrowser.org/oma/group/A0A4X1TAP3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TAP3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAP3" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": 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"https://www.uniprot.org/uniprotkb/A0A4X1ULF8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULF8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULF8" } ], "pmid": "" }, { "name": "transcription initiation at RNA polymerase II promoter", "id": "GO:0006367", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006367", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULF8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULF8" } ], "pmid": "" }, { "name": "transcription elongation by RNA polymerase II", "id": "GO:0006368", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006368", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULF8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULF8" } ], "pmid": "" }, { "name": "transcription elongation by RNA polymerase I", "id": "GO:0006362", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006362", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULF8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULF8" } ], "pmid": "" }, { "name": "termination of RNA polymerase III transcription", "id": "GO:0006386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006386", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULF8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULF8" } ], "pmid": "" }, { "name": "transcription initiation at RNA polymerase III promoter", "id": "GO:0006384", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006384", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULF8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULF8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA-directed RNA polymerase activity", "id": "GO:0003899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003899", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULF8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULF8" } ], "pmid": "" }, { "name": "single-stranded DNA binding", "id": "GO:0003697", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003697", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULF8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULF8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { 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], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UGM3-1", "uniprot_ac": "A0A4X1UGM3", "uniprot_id": "A0A4X1UGM3_PIG", "mass": { "chemical_mass": 77358.0, "monoisotopic_mass": 77358.0 }, "refseq": { "ac": "XP_003354974", "name": "cleavage and polyadenylation specificity factor subunit 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354974" }, "gene_names": [ { "name": "CPSF3", "type": "recommended", "evidence": [ { "id": "A0A4X1UGM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3" } ] }, { "name": "CPSF3", "type": "synonym", "evidence": [ { "id": "XP_003354974", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354974" } ] } ], "protein_names": [ { "name": "Cleavage and polyadenylation specificity factor subunit 3", "type": "recommended", "evidence": [ { "id": "A0A4X1UGM3", "database": "UniProtKB", "url": 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16661", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16661", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-159231", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159231", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72187", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72187", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73856", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73856", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-77595", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77595", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9770562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003354974", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354974", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1UGM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UGM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UGP5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UGP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAS5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAS5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSY2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LKR1", "url": "https://www.uniprot.org/uniprotkb/I3LKR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LKR1-1", "url": "https://www.uniprot.org/uniprotkb/I3LKR1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLSYQLQKLTGDVEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDGSVLSVTVDGKTANINLETRTVECEEGSEDDESLREMVELAAQRLYEALTPVP", "length": 684, "header": "tr|A0A4X1UGM3-1|A0A4X1UGM3_PIG Isoform 1 of Cleavage and polyadenylation specificity factor subunit 3 OS=Sus scrofa OX=9823 GN=CPSF3 PE=1 SV=1 CANONICAL=A0A4X1UGM3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UGM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3/entry#A0A4X1UGM3-1", "sequence": { "sequence": "MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLSYQLQKLTGDVEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDGSVLSVTVDGKTANINLETRTVECEEGSEDDESLREMVELAAQRLYEALTPVP", "length": 684, "header": "tr|A0A4X1UGM3-1|A0A4X1UGM3_PIG Isoform 1 of Cleavage and polyadenylation specificity factor subunit 3 OS=Sus scrofa OX=9823 GN=CPSF3 PE=1 SV=1 CANONICAL=A0A4X1UGM3-1" }, "locus": { "chromosome": "3", "start_pos": 126905536, "end_pos": 126869049, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073261.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073261.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059746.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059746.1" } ] } }, { "isoform_ac": "A0A4X1UGP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3/entry#A0A4X1UGP5-1", "sequence": { "sequence": "MSAIPAEESDQLLIRPLFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLSYQLQKLTGDVEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDGSVLSVTVDGKTANINLETRTVECEEGSEDDESLREMVELAAQRLYEALTPVP", "length": 630, "header": "tr|A0A4X1UGP5-1|A0A4X1UGP5_PIG Computationally mapped isoform of Cleavage and polyadenylation specific factor 3 OS=Sus scrofa OX=9823 GN=CPSF3 PE=1 SV=1 CANONICAL=A0A4X1UGM3-1" }, "locus": { "chromosome": "3", "start_pos": 126905536, "end_pos": 126869049, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062671.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062671.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053895.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053895.1" } ] } }, { "isoform_ac": "A0A5G2QAS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3/entry#A0A5G2QAS5-1", "sequence": { "sequence": "MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLSYQLQKLTGDVEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQ", "length": 619, "header": "tr|A0A5G2QAS5-1|A0A4X1UGM3_PIG Computationally mapped isoform of Cleavage and polyadenylation specificity factor subunit 3 OS=Sus scrofa OX=9823 GN=CPSF3 PE=1 SV=2 CANONICAL=A0A4X1UGM3-1" }, "locus": { "chromosome": "3", "start_pos": 126905536, "end_pos": 126874485, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067168.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067168.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061122.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061122.2" } ] } }, { "isoform_ac": "A0A5G2QSY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3/entry#A0A5G2QSY2-1", "sequence": { "sequence": "MWTFPGQGLNPRHRSDNCCGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLSYQLQKLTGDVEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQ", "length": 621, "header": "tr|A0A5G2QSY2-1|A0A4X1UGM3_PIG Computationally mapped isoform of Cleavage and polyadenylation specificity factor subunit 3 OS=Sus scrofa OX=9823 GN=CPSF3 PE=1 SV=2 CANONICAL=A0A4X1UGM3-1" }, "locus": { "chromosome": "3", "start_pos": 126901094, "end_pos": 126874485, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086759.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086759.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065097.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065097.2" } ] } }, { "isoform_ac": "I3LKR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3/entry#I3LKR1-1", "sequence": { "sequence": "MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVVSLCVWFSALVGGKASKRADTAFPCGSPILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLSYQLQKLTGDVEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDGSVLSVTVDGKTANINLETRTVECEEGSEDDESLREMVELAAQRLYEALTPVP", "length": 712, "header": "tr|I3LKR1-1|A0A4X1UGM3_PIG Computationally mapped isoform of Cleavage and polyadenylation specificity factor subunit 3 OS=Sus scrofa OX=9823 GN=CPSF3 PE=1 SV=4 CANONICAL=A0A4X1UGM3-1" }, "locus": { "chromosome": "3", "start_pos": 126905536, "end_pos": 126869049, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027309.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027309.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024676.4", "url": "https://www.ensembl.org/id/ENSSSCP00000024676.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAS5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAS5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100622181", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622181", "resource": "KEGG Pathway" }, { "id": "R-SSC-159231", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159231", "resource": "Reactome", "description": "Transport of Mature mRNA Derived from an Intronless Transcript" }, { "id": "R-SSC-72187", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72187", "resource": "Reactome", "description": "mRNA 3'-end processing" }, { "id": "R-SSC-73856", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73856", "resource": "Reactome", "description": "RNA Polymerase II Transcription Termination" }, { "id": "R-SSC-77595", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77595", "resource": "Reactome", "description": "Processing of Intronless Pre-mRNAs" }, { "id": "R-SSC-9770562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "resource": "Reactome", "description": "mRNA Polyadenylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LYA8-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "Cpsf3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEVMLQDIFGEDCVSVKDDSVLSVTVDGKTANINLETRIVECEEGSEDDESLREMVELAAQRLYAALTPVH", "length": 684 }, "evidence": [ { "id": "A0A4X1UGM3", "url": "https://omabrowser.org/oma/group/A0A4X1UGM3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P79101-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDGSILSVTVDGKTANINLETRTVECEEGSEDDESLREMVELAAQRLYEALTPVH", "length": 684 }, "evidence": [ { "id": "A0A4X1UGM3", "url": "https://omabrowser.org/oma/group/A0A4X1UGM3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9QXK7-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "Cpsf3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFYLLYYQLQKLTGDVEELEIQEKPALKVFKSITVVQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEVMLQDIFGEDCVSVKDDSVLSVTVDGKTANINLETRAVECEEGSEDDESLREMVELAAQRLYEALTPVH", "length": 684 }, "evidence": [ { "id": "A0A4X1UGM3", "url": "https://omabrowser.org/oma/group/A0A4X1UGM3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEELEIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDDSILSVTVDGKTANLNLETRTVECEEGSEDDESLREMVELAAQRLYEALTPVH", "length": 684 }, "evidence": [ { "id": "A0A4X1UGM3", "url": "https://omabrowser.org/oma/group/A0A4X1UGM3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UGM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UGM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3" } ], "pmid": "" }, { "name": "RNA endonuclease activity", "id": "GO:0004521", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004521", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UGM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3" } ], "pmid": "" }, { "name": "5'-3' RNA exonuclease activity", "id": "GO:0004534", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004534", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UGM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UGM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3" } ], "pmid": "" }, { "name": "nuclease activity", "id": "GO:0004518", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004518", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UGM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "positive regulation of G1/S transition of mitotic cell cycle", "id": "GO:1900087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900087", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UGM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3" } ], "pmid": "" }, { "name": "mRNA 3'-end processing by stem-loop binding and cleavage", "id": "GO:0006398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006398", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UGM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3" } ], "pmid": "" }, { "name": "co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway", "id": "GO:0180010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0180010", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UGM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3" } ], "pmid": "" }, { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UGM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGM3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mRNA cleavage and polyadenylation 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research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGK4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGK4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100621675", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621675", "resource": "KEGG Pathway" }, { "id": "R-SSC-114604", "name": "", "url": 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Regulate PI3K/AKT Signaling" }, { "id": "R-SSC-9013404", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "resource": "Reactome", "description": "RAC2 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "Q38937-1", "protein_name": "Rac-like GTP-binding protein ARAC5", "gene_name": "ARAC5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKKNKNRCVFL", "length": 196 }, "evidence": [ { "id": "A0A4X1ULH9", "url": "https://omabrowser.org/oma/group/A0A4X1ULH9/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9TU25-1", "protein_name": "Ras-related C3 botulinum toxin substrate 2", "gene_name": "RAC2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRPQKRPCSIL", "length": 192 }, "evidence": [ { "id": "A0A4X1ULH9", "url": "https://omabrowser.org/oma/group/A0A4X1ULH9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 9, "go_terms": [ { "name": "NADPH oxidase complex", "id": "GO:0043020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "actin filament", "id": "GO:0005884", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005884", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "lamellipodium", "id": "GO:0030027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030027", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "cell projection", "id": "GO:0042995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042995", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "protein kinase regulator activity", "id": "GO:0019887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019887", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 18, "go_terms": [ { "name": "actin filament organization", "id": "GO:0007015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007015", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "regulation of mast cell degranulation", "id": "GO:0043304", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043304", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "positive regulation of lamellipodium assembly", "id": "GO:0010592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010592", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "regulation of cell-substrate adhesion", "id": "GO:0010810", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010810", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "regulation of mast cell chemotaxis", "id": "GO:0060753", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060753", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "lymphocyte aggregation", "id": "GO:0071593", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071593", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "positive regulation of neutrophil chemotaxis", "id": "GO:0090023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090023", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "regulation of T cell proliferation", "id": "GO:0042129", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042129", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "superoxide anion generation", "id": "GO:0042554", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042554", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "regulation of respiratory burst", "id": "GO:0060263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060263", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "chemotaxis", "id": "GO:0006935", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006935", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "regulation of actin cytoskeleton organization", "id": "GO:0032956", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032956", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "regulation of cell shape", "id": "GO:0008360", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008360", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "establishment or maintenance of cell polarity", "id": "GO:0007163", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007163", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "cortical cytoskeleton organization", "id": "GO:0030865", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030865", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" }, { "name": "regulation of neutrophil migration", "id": "GO:1902622", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902622", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULH9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] }, { "id": "R-SSC-114542", "name": "RAC1,RAC2,RHOG activate PI3K", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-114542", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114542" } ] }, { "id": "R-SSC-2316434", "name": "PI3K phosphorylates PIP2 to PIP3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2316434", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2316434" } ] }, { "id": "R-SSC-3858475", "name": "ppDVL recruits RAC", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3858475", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3858475" } ] }, { "id": "R-SSC-442273", "name": "VAV1 is a GEF for Rho/Rac family GTPases", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-442273", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-442273" } ] }, { "id": "R-SSC-5668605", "name": "RAC2:GTP binds NOX2 complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "phagocytic vesicle membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5668605", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668605" } ] }, { "id": "R-SSC-5668629", "name": "Production of phagocyte oxygen radicals by NOX2 complex bound to RAC2:GTP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, phagocytic vesicle, phagocytic vesicle membrane, phagolysosome", "input_participant_list": [ "R-ALL-1236709" ], "output_participant_list": [ "R-ALL-2000345" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5668629", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668629" } ] }, { "id": "R-SSC-6789092", "name": "NOX2 generates superoxide anion from oxygen", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, phagocytic vesicle membrane, phagocytic vesicle lumen", "input_participant_list": [ "R-ALL-1222561" ], "output_participant_list": [ "R-ALL-1222461" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6789092", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6789092" } ] }, { "id": "R-SSC-9014293", "name": "RAC2 GDIs block activation of RAC2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9014293", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9014293" } ] }, { "id": "R-SSC-9014294", "name": "RAC2 binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9014294", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9014294" } ] }, { "id": "R-SSC-9014295", "name": "RAC2 GAPs stimulate RAC2 GTPase activity", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9014295", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9014295" } ] }, { "id": "R-SSC-9014296", "name": "RAC2 GEFs activate RAC2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9014296", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9014296" } ] }, { "id": "R-SSC-9014420", "name": "RAC2 translocates to the phagocytic vesicle membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "phagocytic vesicle membrane, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9014420", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9014420" } ] }, { "id": "R-SSC-9014424", "name": "RAC2 binds effectors at the phagocytic vesicle membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "phagocytic vesicle membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9014424", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9014424" } ] }, { "id": "R-SSC-9626848", "name": "S100A8:S100A9:AA:Ca(2+) binds NOX2 complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, phagocytic vesicle membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9626848", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9626848" } ] }, { "id": "R-SSC-9714477", "name": "RAC2 binds effectors at the mitochondrial outer membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial outer membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9714477", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9714477" } ] }, { "id": "R-SSC-9714480", "name": "RAC2 translocates to the mitochondrial membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial outer membrane, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9714480", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9714480" } ] }, { "id": "R-SSC-9714481", "name": "RAC2 binds effectors at the ER membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9714481", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9714481" } ] }, { "id": "R-SSC-9714483", "name": "RAC2 translocates to the ER membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. 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"database": "Ensembl Transcript", "id": "ENSSSCT00000010840.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010840.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010557.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010557.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5K1U771", "url": "https://www.uniprot.org/uniprotkb/A0A5K1U771" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2559580", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559580", "resource": "Reactome", "description": "Oxidative Stress Induced Senescence" }, { "id": "R-SSC-5687128", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687128", "resource": "Reactome", "description": "MAPK6/MAPK4 signaling" }, { "id": "R-SSC-6804756", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "resource": "Reactome", "description": "Regulation of TP53 Activity through Phosphorylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "stress-induced premature senescence", "id": "GO:0090400", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090400", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "regulation of translation", "id": "GO:0006417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006417", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "Ras protein signal transduction", "id": "GO:0007265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007265", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "negative regulation of TOR signaling", "id": "GO:0032007", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032007", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "regulation of intracellular signal transduction", "id": "GO:1902531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902531", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "calcium-dependent protein serine/threonine kinase activity", "id": "GO:0009931", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009931", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "calmodulin binding", "id": "GO:0005516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005516", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "mitogen-activated protein kinase binding", "id": "GO:0051019", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051019", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "p53 binding", "id": "GO:0002039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002039", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "calcium/calmodulin-dependent protein kinase activity", "id": "GO:0004683", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004683", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "septin cytoskeleton", "id": "GO:0032156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032156", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TCR0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 20, "end_pos": 22, "annotation": "n_glycosylation_sequon" }, { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] }, { "id": "R-SSC-3238999", "name": "Activated human MKK3/MKK6 phosphorylates p38 MAPK complexed with MAPKAPK5", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3238999", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3238999" } ] }, { "id": "R-SSC-3239014", "name": "MAPKAPK5 phosphorylates TP53", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3239014", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3239014" } ] }, { "id": "R-SSC-3239019", "name": "Active p38 MAPK phosphorylates MAPKAPK5", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3239019", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3239019" } ] }, { "id": "R-SSC-5687088", "name": "PKA phosphorylates MAPKAPK5", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-SSC-2562517" ], "output_participant_list": [ "R-SSC-5687026" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5687088", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687088" } ] }, { "id": "R-SSC-5687091", "name": "p-S MAPK6,4 binds MAPKAPK5", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5687091", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687091" } ] }, { "id": "R-SSC-5687094", "name": "p-S MAPK6,4 phosphorylate MAPKAPK5", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5687094", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687094" } ] }, { "id": "R-SSC-5687101", "name": "p-T182 MAPKAPK5 phosphorylates FOXO3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-SSC-5687032" ], "output_participant_list": [ "R-SSC-5687014" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5687101", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687101" } ] }, { "id": "R-SSC-5687120", "name": "p-S MAPK6,4:p-T182 MAPKAPK5 translocate to the cytosol", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5687120", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687120" } ] }, { "id": "R-SSC-5687121", "name": "p-S MAPKAPK5 phosphorylates HSPB1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-SSC-450563" ], "output_participant_list": [ "R-SSC-5687009" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5687121", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687121" } ] }, { "id": "R-SSC-5687123", "name": "p-S115 MAPKAPK5 translocates to the cytosol", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [ "R-SSC-5687028" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5687123", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687123" } ] }, { "id": "R-SSC-5690245", "name": "p-T182 MAPKAPK5 binds DNAJB1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5690245", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5690245" } ] }, { "id": "R-SSC-5690250", "name": "p-T182-MAPKAPK5 phoshphorylates DNAJB1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5690250", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5690250" } ] }, { "id": "R-SSC-5692770", "name": "SEPT7 binds p-S189 MAPK6 and p-T182 MAPKAPK5", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5692770", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5692770" } ] }, { "id": "R-SSC-5692775", "name": "SEPT7:p-S189 MAPK6:p-T182 MAPKAPK5 phosphorylates CDC42EPs", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5692775", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5692775" } ] }, { "id": "R-SSC-5692779", "name": "p-T182 MAPKAPK5 phosphorylates FOXO1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-SSC-199300" ], "output_participant_list": [ "R-SSC-5692651" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5692779", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5692779" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-199300", "participant_name": "FOXO1 [nucleoplasm]", "crossref": [ { "id": "F1RME6", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000009370", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000029792", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000035744", "database": "ENSEMBL", "url": "" }, { "id": "NP_999179.3", "database": "RefSeq", "url": "" }, { "id": "98013", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-2562517", "participant_name": "MAPKAPK5 [nucleoplasm]", "crossref": [ { "id": "A0A5K1U771", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000009890", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000010557", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000010840", "database": "ENSEMBL", "url": "" }, { "id": "90013", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-450563", "participant_name": "HSPB1 [cytosol]", "crossref": [ { "id": "A0A2C9F366", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000039962", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000008216", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000008435", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-5687009", "participant_name": "phospho-HSPB1 [cytosol]", "crossref": [ { "id": "A0A2C9F366", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000008216", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000008435", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000039962", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-5687014", "participant_name": "phospho-FOXO3 [cytosol]", "crossref": [ { "id": "XP_020939880.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000004735", "database": "ENSEMBL", "url": "" }, { "id": "XP_020939890.1", "database": "RefSeq", "url": "" }, { "id": "F1RT23", "database": "UniProt", "url": "" }, { "id": "ENSSSCT00000004849", "database": "ENSEMBL", "url": "" }, { "id": "99715", "database": "VGNC", "url": "" }, { "id": "XP_020939872.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCG00000004387", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-5687026", "participant_name": "phospho-MAPKAPK5 [nucleoplasm]", "crossref": [ { "id": "ENSSSCP00000010557", "database": "ENSEMBL", "url": "" }, { "id": "A0A5K1U771", "database": "UniProt", "url": "" }, { "id": "90013", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000010840", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000009890", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-5687028", "participant_name": "phospho-MAPKAPK5 [cytosol]", "crossref": [ { "id": "ENSSSCT00000010840", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000009890", "database": "ENSEMBL", "url": "" }, { "id": "A0A5K1U771", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000010557", "database": "ENSEMBL", "url": "" }, { "id": "90013", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-5687032", "participant_name": "FOXO3 [cytosol]", "crossref": [ { "id": "F1RT23", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000004387", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000004735", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000004849", "database": "ENSEMBL", "url": "" }, { "id": "XP_020939890.1", "database": "RefSeq", "url": "" }, { "id": "XP_020939872.1", "database": "RefSeq", "url": "" }, { "id": "XP_020939880.1", "database": "RefSeq", "url": "" }, { "id": "99715", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-5692651", "participant_name": "phospho-FOXO1 [nucleoplasm]", "crossref": [ { "id": "ENSSSCT00000035744", "database": "ENSEMBL", "url": "" }, { "id": "98013", "database": "VGNC", "url": "" }, { "id": "ENSSSCG00000009370", "database": "ENSEMBL", "url": "" }, { "id": "F1RME6", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000029792", "database": "ENSEMBL", "url": "" }, { "id": "NP_999179.3", "database": "RefSeq", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1TCR0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TCR0" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 301, "start_aa": "Ile", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 20, "end_pos": 22 }, { "start_pos": 216, "end_pos": 218 }, { "start_pos": 302, "end_pos": 304 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1STI9-1", "uniprot_ac": "A0A4X1STI9", "uniprot_id": "A0A4X1STI9_PIG", "mass": { "chemical_mass": 157804.0, "monoisotopic_mass": 157804.0 }, "refseq": {}, "gene_names": [ { "name": "BLTP3B", "type": "recommended", "evidence": [ { "id": "A0A4X1STI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9" } ] } ], "protein_names": [ { "name": "Bridge-like lipid transfer protein family member 3B", "type": "synonym", "evidence": [ { "id": "A0A4X1STI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STI9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BLTP3B", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9", "locus": { "chromosome": "5", "start_pos": 84042202, "end_pos": 83935703, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026697", "url": "https://www.ensembl.org/id/ENSSSCG00000026697" } ] } } ], "crossref": [ { "id": "ENSSSCG00000026697", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026697", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026728", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026728", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A287ABR1", "url": "https://www.orthodb.org/?gene=A0A287ABR1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22774", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22774", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22774:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22774:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24917", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24917", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9696270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZNX5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZNX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNX5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABR1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABR1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B040", "url": "https://www.uniprot.org/uniprotkb/A0A287B040", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B040-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B040-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1STI9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1STI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LN07", "url": "https://www.uniprot.org/uniprotkb/I3LN07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LN07-1", "url": "https://www.uniprot.org/uniprotkb/I3LN07-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLDLPTWLAINKVFCNKASIRIPWTKLKTHPICLSLDKVIMEMSTCEEPRNPNGPSPIATASGQSEYGFAEKVVEGLTVSVNSIVIRIGAKAFNASFELSQLRIYSVNANWEHGDLRFTRIQDPQRGEVLTFKEINWQMIRIEADATQSSHLEIMCAPVRLITNQSKIRVTLKRRLKDCNVIATKLVLILDDLLWVLTDSQLKAMVQYAKSLSEAIEKSTEQRKSMAPEPTQSSTIAPATQQVKTPQTSNAPDLNDAIVKLFNDFDVKETSHHLVISHLDLHICDDIHAKEKESNRRVTGGAMQLSFTQLTIDYYPYHKAGDSCSHWMYFSDATKTKNGWANELLHEFECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDSTLKGTSKTPSVLSQQSKAKLMSSSVVVRLADFNIYQVSTAEQCRSSPKSMVSCNKKSLYLPQEMSAVYIEFTEYYYPDGKDFPIPSPNLYSQLNALQFTVDERSILWLNQFLLDLKQSLNQFMAVYKLNDNSKSDEHVDIRVDGLMLKFVIPSEMKSQCHQDQPHAISIQSSEMIATNTRHCPNCRHSDLEALFQDFKDCDFFSKTYTSFPKSGDSFNLLHPIFQRHAHEQDTKMHEVYKGNITPKLNKHTLKTSAATDVWAVYFSQFWIDYEGTKSGKGRPVNFVDSFPLSIWICQPVRYALSQKELQACNQVSLNTSQSESSDLTGRWKRKKLLKEYYSTESDPLANGNQKPSDTFSRFSSSSSDADIHVLVHVHKHVSMQINHYQYLLLLFLHESLVLLSENLRKDVEAVTGSPASQTSICIGILLKSAEVALLLHPVDQANTLKSPVSESVSPMVPDYLPTENGEFLSSKRKQVSSGINQIRSVTVNHMSDNRSMSVDLSHVSLKDSLLFKSASDTNLQKGISFLDYLSDKNLGKINEDESSGIVCKSGSGEIESETSGKKDSSYTDSHSVLNYREDSSMLSFDNGGNQNMLSKGSETIESIFKAEDLLPETASLSENLEISKEEVPTVRTLKSQSSLSGKPKERCLPNLAPLSVSYKNMKRSPSQTSLDTISLDSMILEEQLLESDGSDSHIFLEKGIKKNSTINYQSPAERANASVNLQNYGETSPDAISTNSEGAQESHDDLMSVVVFKITGVNGEIDIRGEDTEICLQVDQVTPDQLGNISLRHYLCNRPVGSDHKAAIHSKSSPEITLRFESGPGAVIHSLLAEKNGFLQCHIENFSTEFLTSSLMNIQHFLEDETVATVMPMKIQVSNTKINLKDDSPRSSTISLEPAPVTVHIDHLVVERNDDGSFHIRDSYVFNTENDLKENVRSDSVLLTSGKCDLKKQHSVTQATQTSPEVPWPSQSPNFPECSFDFTREQLMEENESLKQELAKAKMALAEAHLEKDALLHRIKKMTVE", "length": 1409, "header": "tr|A0A4X1STI9-1|A0A4X1STI9_PIG Isoform 1 of Bridge-like lipid transfer protein family member 3B OS=Sus scrofa OX=9823 GN=BLTP3B PE=4 SV=1 CANONICAL=A0A4X1STI9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZNX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9/entry#A0A286ZNX5-1", "sequence": { "sequence": "MAGLIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINKVFCNKASIRIPWTKLKTHPICLSLDKVIMEMSTCEEPRNPNGPSPIATASGQSEYGFAEKVVEGLTVSVNSIVIRIGAKAFNASFELSQLRIYSVNANWEHGDLRFTRIQDPQRGELKDCNVIATKLVLILDDLLWVLTDSQLKAMVQYAKSLSEAIEKSTEQRKSMAPEPTQSSTIAPATQQVKTPQTSNAPDLNDAIVKLFNDFDVKETSHHLVISHLDLHICDDIHAKEKESNRRVTGGAMQLSFTQLTIDYYPYHKAGDSCSHWMYFSDATKTKNGWANELLHEFECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDSTLKGTSKTPSVLSQQSKAKLMSSSVVVRLADFNIYQVSTAEQCRSSPKSMVSCNKKSLYLPQEMSAVYIEFTEYYYPDGKDFPIPSPNLYSQLNALQFTVDERSILWLNQFLLDLKQSLNQFMAVYKLNDNSKSDEHVDIRVDGLMLKFVIPSEMKSQCHQDQPHAISIQSSEMIATNTRHCPNCRHSDLEALFQDFKDCDFFSKTYTSFPKSGDSFNLLHPIFQRHAHEQDTKMHEVYKGNITPKLNKHTLKTSAATDVWAVYFSQFWIDYEGTKSGKGRPVNFVDSFPLSIWICQPVRYALSQKELQACNQVSLNTSQSESSDLTGRWKRKKLLKEYYSTESDPLANGNQKPSDTFSRFSSSSSDADIHVLVHVHKHVSMQINHYQYLLLLFLHESLVLLSENLRKDVEAVTGSPASQTSICIGILLKSAEVALLLHPVDQANTLKSPVSESVSPMVPDYLPTENGEFLSSKRKQVSSGINQIRSVTVNHMSDNRSMSVDLSHVSLKDSLLFKSASDTNLQKGISFLDYLSDKNLGKINEDESSGIVCKSGSGEIESETSGKKDSSYTDSHSVLNYREDSSMLSFDNGGNQNMLSKGSETIESIFKAEDLLPETASLSENLEISKEEVPTVRTLKSQSSLSGKPKERCLPNLAPLSVSYKNMKRSPSQTSLDTISLDSMILEEQLLESDGSDSHIFLEKGIKKNSTINYQSPAERANASVNLQNYGETSPDAISTNSEGAQESHDDLMSVVVFKITGVNGEIDIRGEDTEICLQVDQVTPDQLGNISLRHYLCNRPVGSDHKAAIHSKSSPEITLRFESGPGAVIHSLLAEKNGFLQCHIENFSTEFLTSSLMNIQHFLEDETVATVMPMKIQVSNTKINLKDDSPRSSTISLEPAPVTVHIDHLVVERNDDGSFHIRDSYVFNTENDLKENVRSDSVLLTSGKCDLKKQHSVTQATQTSPEVPWPSQSPNFPECSFDFTREQLMEENESLKQELAKAKMALAEAHLEKDALLHRIKKMTVE", "length": 1410, "header": "tr|A0A286ZNX5-1|A0A4X1STI9_PIG Computationally mapped isoform of Bridge-like lipid transfer protein family member 3B OS=Sus scrofa OX=9823 GN=BLTP3B PE=4 SV=1 CANONICAL=A0A4X1STI9-1" }, "locus": { "chromosome": "5", "start_pos": 84037986, "end_pos": 83935948, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059466.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059466.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033177.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033177.1" } ] } }, { "isoform_ac": "A0A287ABR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9/entry#A0A287ABR1-1", "sequence": { "sequence": "MAGLIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINKVFCNKASIRIPWTKLKTHPICLSLDKVIMEMSTCEEPRNPNGPSPIATASGQSEYGFAEKVVEGLTVSVNSIVIRIGAKAFNASFELSQLRIYSVNANWEHGDLRFTRIQDPQRGEVLTFKEINWQMIRIEADATQSSHLEIMCAPVRLITNQSKIRVTLKRRLKDCNVIATKLVLILDDLLWVLTDSQLKAMVQYAKSLSEAIEKSTEQRKSMAPEPTQSSTIAPATQQVKTPQTSNAPDLNDAIVKLFNDFDVKETSHHLVISHLDLHICDDIHAKEKESNRRVTGGAMQLSFTQLTIDYYPYHKAGDSCSHWMYFSDATKTKNGWANELLHEFECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDSTLKGTSKTPSVLSQQSKAKLMSSSVVVRLADFNIYQVSTAEQCRSSPKSMVSCNKKSLYLPQEMSAVYIEFTEYYYPDGKDFPIPSPNLYSQLNALQFTVDERSILWLNQFLLDLKQSLNQFMAVYKLNDNSKSDEHVDIRVDGLMLKFVIPSEMKSQCHQDQPHAISIQSSEMIATNTRHCPNCRHSDLEALFQDFKDCDFFSKTYTSFPKSGDSFNLLHPIFQRHAHEQDTKMHEVYKGNITPKLNKHTLKTSAATDVWAVYFSQFWIDYEGTKSGKGRPVNFVDSFPLSIWICQPVRYALSQKELQACNQVSLNTSQSESSDLTGRWKRKKLLKEYYSTESDPLANGNQKPSDTFSRFSSSSSDADIHVLVHVHKHVSMQINHYQYLLLLFLHESLVLLSENLRKDVEAVTGSPASQTSICIGILLKSAEVALLLHPVDQANTLKSPVSESVSPMVPDYLPTENGEFLSSKRKQVSSGINQIRSVTVNHMSDNRSMSVDLSHVSLKDSLLFKSASDTNLQKGISFLDYLSDKNLGKINEDESSGIVCKSGSGEIESETSGKKDSSYTDSHSVLNYREDSSMLSFDNGGNQNMLSKGSETIESIFKAEDLLPETASLSENLEISKEEVPTVRTLKSQSSLSGKPKERCLPNLAPLSVSYKNMKRSPSQTSLDTISLDSMILEEQLLESDGSDSHIFLEKGIKKNSTINYQSPAERANASVNLQNYGETSPDAISTNSEGAQESHDDLMSVVVFKITGVNGEIDIRGEDTEICLQVDQVTPDQLGNISLRHYLCNRPVGSDHKAAIHSKSSPEITLRFESGPGAVIHSLLAEKNGFLQCHIENFSTEFLTSSLMNIQHFLEDETVATVMPMKIQVSNTKINLKDDSPRSSTISLEPAPVTVHIDHLVVERNDDGSFHIRDSYVFNTENDLKENVRSDSVLLTSGKCDLKKQHSVTQATQTSPEVPWPSQSPNFPECSFDFTREQLMEENESLKQELAKAKMALAEAHLEKDALLHRIKKMTVE", "length": 1457, "header": "tr|A0A287ABR1-1|A0A4X1STI9_PIG Computationally mapped isoform of Bridge-like lipid transfer protein family member 3B OS=Sus scrofa OX=9823 GN=BLTP3B PE=4 SV=2 CANONICAL=A0A4X1STI9-1" }, "locus": { "chromosome": "5", "start_pos": 84037986, "end_pos": 83935948, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062521.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062521.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041324.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041324.2" } ] } }, { "isoform_ac": "A0A287B040-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9/entry#A0A287B040-1", "sequence": { "sequence": "MAGLIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINKVFCNKASIRIPWTKLKTHPICLSLDKVIMEMSTCEEPRNPNGPSPIATASGQSEYGFAEKVVEGLTVSVNSIVIRIGAKAFNASFELSQLRIYSVNANWEHGDLRFTRIQDPQRGEVLTFKEINWQMIRIEADATQSSHLEIMCAPVRLITNQSKIRVTLKRRLKDCNVIATKLVLILDDLLWVLTDSQLKAMVQYAKSLSEAIEKSTEQRKSMAPEPTQSSTIAPATQQVKTPQTSNAPDLNDAIVKLFNDFDVKETSHHLVISHLDLHICDDIHAKEKGDSCSHWMYFSDATKTKNGWANELLHEFECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDSTLKGTSKTPSVLSQQSKAKLMSSSVVVRLADFNIYQVSTAEQCRSSPKSMVSCNKKSLYLPQEMSAVYIEFTEYYYPDGKDFPIPSPNLYSQLNALQFTVDERSILWLNQFLLDLKQSLNQFMAVYKLNDNSKSDEHVDIRVDGLMLKFVIPSEMKSQCHQDQPHAISIQSSEMIATNTRHCPNCRHSDLEALFQDFKDCDFFSKTYTSFPKSGDSFNLLHPIFQRHAHEQDTKMHEVYKGNITPKLNKHTLKTSAATDVWAVYFSQFWIDYEGTKSGKGRPVNFVDSFPLSIWICQPVRYALSQKELQACNQVSLNTSQSESSDLTGRWKRKKLLKEYYSTESDPLANGNQKPSDTFSRFSSSSSDADIHVLVHVHKHVSMQINHYQYLLLLFLHESLVLLSENLRKDVEAVTGSPASQTSICIGILLKSAEVALLLHPVDQANTLKSPVSESVSPMVPDYLPTENGEFLSSKRKQVSSGINQIRSVTVNHMSDNRSMSVDLSHVSLKDSLLFKSASDTNLQKGISFLDYLSDKNLGKINEDESSGIVCKSGSGEIESETSGKKDSSYTDSHSVLNYREDSSMLSFDNGGNQNMLSKGSETIESIFKAEDLLPETASLSENLEISKEEVPTVRTLKSQSSLSGKPKERCLPNLAPLSVSYKNMKRSPSQTSLDTISLDSMILEEQLLESDGSDSHIFLEKGIKKNSTINYQSPAERANASVNLQNYGETSPDAISTNSEGAQESHDDLMSVVVFKITGVNGEIDIRGEDTEICLQVDQVTPDQLGNISLRHYLCNRPVGSDHKAAIHSKSSPEITLRFESGPGAVIHSLLAEKNGFLQCHIENFSTEFLTSSLMNIQHFLEDETVATVMPMKIQVSNTKINLKDDSPRSSTISLEPAPVTVHIDHLVVERNDDGSFHIRDSYVFNTENDLKENVRSDSVLLTSGKCDLKKQHSVTQATQTSPEVPWPSQSPNFPECSFDFTREQLMEENESLKQELAKAKMALAEAHLEKDALLHRIKKMTVE", "length": 1429, "header": "tr|A0A287B040-1|A0A4X1STI9_PIG Computationally mapped isoform of Bridge-like lipid transfer protein family member 3B OS=Sus scrofa OX=9823 GN=BLTP3B PE=4 SV=1 CANONICAL=A0A4X1STI9-1" }, "locus": { "chromosome": "5", "start_pos": 84037986, "end_pos": 83935948, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046579.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046579.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049469.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049469.1" } ] } }, { "isoform_ac": "A0A4X1STI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9/entry#A0A4X1STI9-1", "sequence": { "sequence": "MLDLPTWLAINKVFCNKASIRIPWTKLKTHPICLSLDKVIMEMSTCEEPRNPNGPSPIATASGQSEYGFAEKVVEGLTVSVNSIVIRIGAKAFNASFELSQLRIYSVNANWEHGDLRFTRIQDPQRGEVLTFKEINWQMIRIEADATQSSHLEIMCAPVRLITNQSKIRVTLKRRLKDCNVIATKLVLILDDLLWVLTDSQLKAMVQYAKSLSEAIEKSTEQRKSMAPEPTQSSTIAPATQQVKTPQTSNAPDLNDAIVKLFNDFDVKETSHHLVISHLDLHICDDIHAKEKESNRRVTGGAMQLSFTQLTIDYYPYHKAGDSCSHWMYFSDATKTKNGWANELLHEFECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDSTLKGTSKTPSVLSQQSKAKLMSSSVVVRLADFNIYQVSTAEQCRSSPKSMVSCNKKSLYLPQEMSAVYIEFTEYYYPDGKDFPIPSPNLYSQLNALQFTVDERSILWLNQFLLDLKQSLNQFMAVYKLNDNSKSDEHVDIRVDGLMLKFVIPSEMKSQCHQDQPHAISIQSSEMIATNTRHCPNCRHSDLEALFQDFKDCDFFSKTYTSFPKSGDSFNLLHPIFQRHAHEQDTKMHEVYKGNITPKLNKHTLKTSAATDVWAVYFSQFWIDYEGTKSGKGRPVNFVDSFPLSIWICQPVRYALSQKELQACNQVSLNTSQSESSDLTGRWKRKKLLKEYYSTESDPLANGNQKPSDTFSRFSSSSSDADIHVLVHVHKHVSMQINHYQYLLLLFLHESLVLLSENLRKDVEAVTGSPASQTSICIGILLKSAEVALLLHPVDQANTLKSPVSESVSPMVPDYLPTENGEFLSSKRKQVSSGINQIRSVTVNHMSDNRSMSVDLSHVSLKDSLLFKSASDTNLQKGISFLDYLSDKNLGKINEDESSGIVCKSGSGEIESETSGKKDSSYTDSHSVLNYREDSSMLSFDNGGNQNMLSKGSETIESIFKAEDLLPETASLSENLEISKEEVPTVRTLKSQSSLSGKPKERCLPNLAPLSVSYKNMKRSPSQTSLDTISLDSMILEEQLLESDGSDSHIFLEKGIKKNSTINYQSPAERANASVNLQNYGETSPDAISTNSEGAQESHDDLMSVVVFKITGVNGEIDIRGEDTEICLQVDQVTPDQLGNISLRHYLCNRPVGSDHKAAIHSKSSPEITLRFESGPGAVIHSLLAEKNGFLQCHIENFSTEFLTSSLMNIQHFLEDETVATVMPMKIQVSNTKINLKDDSPRSSTISLEPAPVTVHIDHLVVERNDDGSFHIRDSYVFNTENDLKENVRSDSVLLTSGKCDLKKQHSVTQATQTSPEVPWPSQSPNFPECSFDFTREQLMEENESLKQELAKAKMALAEAHLEKDALLHRIKKMTVE", "length": 1409, "header": "tr|A0A4X1STI9-1|A0A4X1STI9_PIG Isoform 1 of Bridge-like lipid transfer protein family member 3B OS=Sus scrofa OX=9823 GN=BLTP3B PE=4 SV=1 CANONICAL=A0A4X1STI9-1" }, "locus": { "chromosome": "5", "start_pos": 84037986, "end_pos": 83968166, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038630.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038630.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042560.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042560.3" } ] } }, { "isoform_ac": "I3LN07-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9/entry#I3LN07-1", "sequence": { "sequence": "MLDLPTWLAINKVFCNKASIRIPWTKLKTHPICLSLDKVIMEMSTCEEPRNPNGPSPIATASGQSEYGFAEKVVEGLTVSVNSIVIRIGAKAFNASFELSQLRIYSVNANWEHGDLRFTRIQDPQRGEVLTFKEINWQMIRIEADATQSSHLEIMCAPVRLITNQSKIRVTLKRRLKDCNVIATKLVLILDDLLWVLTDSQLKAMVQYAKSLSEAIEKSTEQRKSMAPEPTQSSTIAPATQQVKTPQTSNAPDLNDAIVKLFNDFDVKETSHHLVISHLDLHICDDIHAKEKESNRRVTGGAMQLSFTQLTIDYYPYHKAGDSCSHWMYFSDATKTKNGWANELLHEFECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDSTLKGTSKTPSVLSQQSKAKLMSSSVVVRLADFNIYQVSTAEQCRSSPKSMVSCNKKSLYLPQEMSAVYIEFTEYYYPDGKDFPIPSPNLYSQLNALQFTVDERSILWLNQFLLDLKQSLNQFMAVYKLNDNSKSDEHVDIRVDGLMLKFVIPSEMKSQCHQDQPHAISIQSSEMIATNTRHCPNCRHSDLEALFQDFKDCDFFSKTYTSFPKSGDSFNLLHPIFQRHAHEQDTKMHEVYKGNITPKLNKHTLKTSAATDVWAVYFSQFWIDYEGTKSGKGRPVNFVDSFPLSIWICQPVRYALSQKELQACNQVSLNTSQSESSDLTGRWKRKKLLKEYYSTESDPLANGNQKPSDTFSRFSSSSSDADIHVLVHVHKHVSMQINHYQYLLLLFLHESLVLLSENLRKDVEAVTGSPASQTSICIGILLKSAEVALLLHPVDQANTLKSPVSESVSPMVPDYLPTENGEFLSSKRKQVSSGINQIRSVTVNHMSDNRSMSVDLSHVSLKDSLLFKSASDTNLQKGISFLDYLSDKNLGKINEDESSGIVCKSGSGEIESETSGKKDSSYTDSHSVLNYREDSSMLSFDNGGNQNMLSKGSETIESIFKAEDLLPETASLSENLEISKEEVPTVRTLKSQSSLSGKPKERCLPNLAPLSVSYKNMKRSPSQTSLDTISLDSMILEEQLLESDGSDSHIFLEKGIKKNSTINYQSPAERANASVNLQNYGETSPDAISTNSEGAQESHDDLMSVVVFKITGVNGEIDIRGEDTEICLQVDQVTPDQLGNISLRHYLCNRPVGSDHKAAIHSKSSPEITLRFESGPGAVIHSLLAEKNGFLQCHIENFSTEFLTSSLMNIQHFLEDETVATVMPMKIQVSNTKINLKDDSPRSSTISLEPAPVTVHIDHLVVERNDDGSFHIRENESLKQELAKAKMALAEAHLEKDALLHRIKKMTVE", "length": 1341, "header": "tr|I3LN07-1|A0A4X1STI9_PIG Computationally mapped isoform of Bridge-like lipid transfer protein family member 3B OS=Sus scrofa OX=9823 GN=BLTP3B PE=4 SV=4 CANONICAL=A0A4X1STI9-1" }, "locus": { "chromosome": "5", "start_pos": 84037986, "end_pos": 83968166, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028017.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028017.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025479.4", "url": "https://www.ensembl.org/id/ENSSSCP00000025479.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 231, "start_aa": "Thr", "end_pos": 231, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr231", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LN07", "url": "https://www.uniprot.org/uniprotkb/I3LN07" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9696270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "resource": "Reactome", "description": "RND2 GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STI9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STI9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STI9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9" } ], "pmid": "" }, { "name": "lipid transfer activity", "id": "GO:0120013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120013", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STI9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9" } ], "pmid": "" }, { "name": "GARP complex binding", "id": "GO:0062069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0062069", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STI9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "early endosome to Golgi transport", "id": "GO:0034498", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034498", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STI9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STI9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1091, "end_pos": 1093, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1104, "end_pos": 1106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1172, "end_pos": 1174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1229, "end_pos": 1231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1375, "end_pos": 1377, "annotation": "n_glycosylation_sequon" }, { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 627, "end_pos": 629, "annotation": "n_glycosylation_sequon" }, { "start_pos": 702, "end_pos": 704, "annotation": "n_glycosylation_sequon" }, { "start_pos": 881, "end_pos": 883, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 231 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1091, "end_pos": 1093 }, { "start_pos": 1104, "end_pos": 1106 }, { "start_pos": 1172, "end_pos": 1174 }, { "start_pos": 1229, "end_pos": 1231 }, { "start_pos": 1375, "end_pos": 1377 }, { "start_pos": 164, "end_pos": 166 }, { "start_pos": 627, "end_pos": 629 }, { "start_pos": 702, "end_pos": 704 }, { "start_pos": 881, "end_pos": 883 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": 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] }, { "uniprot_canonical_ac": "A0A4X1U712-1", "uniprot_ac": "A0A4X1U712", "uniprot_id": "A0A4X1U712_PIG", "mass": { "chemical_mass": 21732.0, "monoisotopic_mass": 21732.0 }, "refseq": { "ac": "XP_020940313", "name": "AP-3 complex subunit sigma-1 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940313" }, "gene_names": [ { "name": "AP3S1", "type": "recommended", "evidence": [ { "id": "A0A4X1U712", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U712" } ] }, { "name": "AP3S1", "type": "synonym", "evidence": [ { "id": "XP_020940313", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940313" } ] } ], "protein_names": [ { "name": "AP-3 complex subunit sigma-1 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020940313", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940313" } ] }, { "name": "Adaptor related protein complex 3 subunit sigma 1", "type": "synonym", "evidence": [ { 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The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. 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"GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000804", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000804", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016635", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016635", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027155", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027155", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100736866", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736866", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DLIFNWQ", "url": 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"id": "A0A287BPZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U6E5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6E5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U6E5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6E5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U712", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U712", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U712-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U712-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U730", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U730", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U730-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U730-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNLPSFK", "length": 193, "header": "tr|A0A4X1U712-1|A0A4X1U712_PIG Isoform 1 of Adaptor related protein complex 3 subunit sigma 1 OS=Sus scrofa OX=9823 GN=AP3S1 PE=3 SV=1 CANONICAL=A0A4X1U712-1" }, "isoforms": [ { "isoform_ac": "A0A287BPZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U712/entry#A0A287BPZ4-1", "sequence": { "sequence": "MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEVNTEFERIKLKTLLNMILATLNNTHLYLQHLLGGSWREVGYNKNYIAAGWLSRSSSPCCISCKEYESS", "length": 219, "header": "tr|A0A287BPZ4-1|A0A4X1U712_PIG Computationally mapped isoform of Adaptor related protein complex 3 subunit sigma 1 OS=Sus scrofa OX=9823 GN=AP3S1 PE=3 SV=1 CANONICAL=A0A4X1U712-1" }, "locus": { "chromosome": "2", 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"ENSSSCT00000062841.2", "url": "https://www.ensembl.org/id/ENSSSCT00000062841.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044595.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044595.1" } ] } }, { "isoform_ac": "A0A4X1U712-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U712/entry#A0A4X1U712-1", "sequence": { "sequence": "MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNLPSFK", "length": 193, "header": "tr|A0A4X1U712-1|A0A4X1U712_PIG Isoform 1 of Adaptor related protein complex 3 subunit sigma 1 OS=Sus scrofa OX=9823 GN=AP3S1 PE=3 SV=1 CANONICAL=A0A4X1U712-1" }, "locus": { "chromosome": "2", "start_pos": 120039354, "end_pos": 119965986, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062758.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062758.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051439.3", "url": "https://www.ensembl.org/id/ENSSSCP00000051439.3" } ] } }, { "isoform_ac": "A0A4X1U730-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U712/entry#A0A4X1U730-1", "sequence": { "sequence": "MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNLPSFK", "length": 169, "header": "tr|A0A4X1U730-1|A0A4X1U730_PIG Computationally mapped isoform of Adaptor related protein complex 3 subunit sigma 1 OS=Sus scrofa OX=9823 GN=AP3S1 PE=3 SV=1 CANONICAL=A0A4X1U712-1" }, "locus": { "chromosome": "2", "start_pos": 120039354, "end_pos": 119965986, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038543.2", "url": "https://www.ensembl.org/id/ENSSSCT00000038543.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035966.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035966.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BPZ4", "url": "https://www.uniprot.org/uniprotkb/A0A287BPZ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100736866", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736866", "resource": "KEGG Pathway" }, { "id": "R-SSC-432722", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432722", "resource": "Reactome", "description": "Golgi Associated Vesicle Biogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AKR4-1", "protein_name": "Adaptor related protein complex 3 subunit sigma 1", "gene_name": "Ap3s1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "GPFPPFPDFSILKLLSFIFRIEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNLPSFK", "length": 190 }, "evidence": [ { "id": "A0A4X1U712", "url": "https://omabrowser.org/oma/group/A0A4X1U712/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P47064-1", "protein_name": "AP-3 complex subunit sigma", "gene_name": "APS3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MIHAVLIFNKKCQPRLVKFYTPVDLPKQKLLLEQVYELISQRNSDFQSSFLVTPPSLLLSNENNNDEVNNEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVESLDRCFTEVNELDLIFNWQTLESVLEEIVQGGMVIETNVNRIVASVDELNKAAESTDSKIGRLTSTGFGSALQAFAQGGFAQWATGQ", "length": 194 }, "evidence": [ { "id": "A0A4X1U712", "url": "https://omabrowser.org/oma/group/A0A4X1U712/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q2YDH6-1", "protein_name": "AP-3 complex subunit sigma-1", "gene_name": "AP3S1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNLPSFK", "length": 193 }, "evidence": [ { "id": "A0A4X1U712", "url": "https://omabrowser.org/oma/group/A0A4X1U712/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q553S2-1", "protein_name": "AP-3 complex subunit sigma", "gene_name": "ap3s1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKSILIINNHGKPRLIKFYEHYSEEKQQQIIRELFLLVSKRTERSCNFLEIGNNSNIFDKDTKIIYRHYATLFFIFCVDSSESELSIIDLIQTFVESLDKCFENVCELDLIFHIDKVHYILDEMVMGGLVLETNPTIIFSNYEIQNKLEKAENPLLSGLAGVMQTIKPNK", "length": 171 }, "evidence": [ { "id": "A0A4X1U712", "url": "https://omabrowser.org/oma/group/A0A4X1U712/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VZ37-1", "protein_name": "AP-3 complex subunit sigma", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDSRLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLDEIVFGGQVLETSSAEVMKAVEEISKLEAASNSISLVPKSVSGWRGR", "length": 166 }, "evidence": [ { "id": "A0A4X1U712", 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"Drosophila melanogaster", "sequence": { "sequence": "MSYQLYRNTTLGNTLQESLDELIQYGQITPGLAFKVLLQFDKSINNALNQRVKARVTFKAGKLNTYRFCDNVWTLMLNDVEFREVHEIVKVDKVKIVACDGKSGEF", "length": 106 }, "evidence": [ { "id": "A0A4X1TRK0", "url": "https://omabrowser.org/oma/group/A0A4X1TRK0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "P52657-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "GTF2A2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNTGSNTTE", "length": 109 }, "evidence": [ { "id": "A0A4X1TRK0", "url": "https://omabrowser.org/oma/group/A0A4X1TRK0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q39236-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "TFIIA-S", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ", "length": 106 }, "evidence": [ { "id": "A0A4X1TRK0", "url": "https://omabrowser.org/oma/group/A0A4X1TRK0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q54ND1-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "gtf2a2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MANKQNYYELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSLHTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANVQDAPPPK", "length": 115 }, "evidence": [ { "id": "A0A4X1TRK0", "url": "https://omabrowser.org/oma/group/A0A4X1TRK0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q80ZM7-1", "protein_name": "Transcription initiation factor IIA subunit 2", "gene_name": "Gtf2a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNTGSNTTE", "length": 109 }, "evidence": [ { "id": "A0A4X1TRK0", "url": "https://omabrowser.org/oma/group/A0A4X1TRK0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of transcription initiation by RNA polymerase II", "id": "GO:0060261", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060261", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRK0" } ], "pmid": "" }, { "name": "RNA polymerase II preinitiation complex assembly", "id": "GO:0051123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051123", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRK0" } ], "pmid": "" }, { "name": "transcription initiation at RNA polymerase II promoter", "id": "GO:0006367", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006367", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRK0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRK0" } ], "pmid": "" }, { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRK0" } ], "pmid": "" }, { "name": "translation initiation factor activity", "id": "GO:0003743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003743", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRK0" } ], "pmid": "" }, { "name": "TBP-class protein binding", "id": "GO:0017025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017025", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRK0" } ], "pmid": "" }, { "name": "RNA polymerase II-specific DNA-binding transcription factor binding", "id": "GO:0061629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061629", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRK0" } ], "pmid": "" }, { "name": "RNA polymerase II general transcription initiation factor activity", "id": "GO:0016251", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016251", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRK0" } ], "pmid": "" }, { "name": "RNA polymerase II general transcription initiation factor binding", "id": "GO:0001091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001091", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRK0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "transcription factor TFIIA complex", "id": "GO:0005672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005672", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRK0" } ], "pmid": "" }, { "name": "transcription factor TFIID complex", "id": "GO:0005669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005669", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRK0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRK0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 71, "end_pos": 73, "annotation": 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"XP_020930152", "name": "major facilitator superfamily domain-containing protein 6 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930152" }, "gene_names": [ { "name": "MFSD6", "type": "recommended", "evidence": [ { "id": "A0A4X1TE34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TE34" } ] }, { "name": "MFSD6", "type": "synonym", "evidence": [ { "id": "XP_020930152", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930152" } ] }, { "name": "MMR2", "type": "synonym", "evidence": [ { "id": "XP_020930152", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930152" } ] } ], "protein_names": [ { "name": "Major facilitator superfamily domain-containing protein 6", "type": "recommended", "evidence": [ { "id": "A0A4X1TE34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TE34/entry#names_and_taxonomy" } ] }, { "name": "major facilitator superfamily domain-containing protein 6 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020930152", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930152" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TE34", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TE34" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MFSD6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TE34", "locus": { "chromosome": "15", "start_pos": 95102219, "end_pos": 95015325, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016052", "url": "https://www.ensembl.org/id/ENSSSCG00000016052" } ] } } ], "crossref": [ { "id": "A0A4X1TE34", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TE34", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd17335", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17335", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100037960", "url": "https://www.ncbi.nlm.nih.gov/gene/100037960", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051717", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051717", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LMLLYHG", "url": "https://omabrowser.org/oma/group/LMLLYHG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR16172", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16172", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16172:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16172:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12832", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12832", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020930152", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930152", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TE34", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TE34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TE34-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TE34-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATDDKVAILTDDEEEQKRKYVLADPFNGISREPEPPSNETPSPSESAAIPEEETDWIEKHCVKINNDLLISKVFYFFFYSAYGSLYPLLPVYYKQLGMSPSQSGLLVGIRYFIEFCSAPFWGVVADRFKKGKVVLLFSLLCWVLFNLGIGFVKPATLRCVPKIPPTARPTNSSHPFTILPANSSIVPSITTSTRTREKRNLPPYDGLEMLVSEPNVTETVIFSTAPNKTSAPTLQPQTDEITDRVMDLTSHPSTAPSTPPGNTTRETTTSLVTTTKSLPSDQVTLVYDQQEVEAIFLVILVVVIIGEFFSASSVTIVDTVTLQYLGKHRDRYGLQRMWGSLGWGLAMLSVGIGIDYTHIDVLIDGKGCKPPEYRNYQIVFIVFGVLMTMALIVATQFRFRYNHFKNGENKGKEVEIPQVERNSSTECSEETPTTTSHSQAFNFWDLIRLLCSVQYGSVLFVAWFMGFGYGFVFTFLYWHLEDLNGTTTLFGVCSVLSHVSELTAYFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPMEVLQGVTHAAIWAACISYLSAAVPPELRTSAQGILQGLHLGLGRGCGAMIGGVLVNYFGAAATFRGIGMACLVILLLFALIQWLAVPDEEEDKTMLAERIPVPSSPVPIATIDLVQQQTEDVMPRIEPRLPPKKTKHQEEQEDVNKPAWGVSSSPWVTFVYALYQIKEMMQLTRDNRASEIQPLQLHIGKEMKGDQ", "length": 744, "header": "tr|A0A4X1TE34-1|A0A4X1TE34_PIG Isoform 1 of Major facilitator superfamily domain-containing protein 6 OS=Sus scrofa OX=9823 GN=MFSD6 PE=3 SV=1 CANONICAL=A0A4X1TE34-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TE34-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TE34/entry#A0A4X1TE34-1", "sequence": { "sequence": "MATDDKVAILTDDEEEQKRKYVLADPFNGISREPEPPSNETPSPSESAAIPEEETDWIEKHCVKINNDLLISKVFYFFFYSAYGSLYPLLPVYYKQLGMSPSQSGLLVGIRYFIEFCSAPFWGVVADRFKKGKVVLLFSLLCWVLFNLGIGFVKPATLRCVPKIPPTARPTNSSHPFTILPANSSIVPSITTSTRTREKRNLPPYDGLEMLVSEPNVTETVIFSTAPNKTSAPTLQPQTDEITDRVMDLTSHPSTAPSTPPGNTTRETTTSLVTTTKSLPSDQVTLVYDQQEVEAIFLVILVVVIIGEFFSASSVTIVDTVTLQYLGKHRDRYGLQRMWGSLGWGLAMLSVGIGIDYTHIDVLIDGKGCKPPEYRNYQIVFIVFGVLMTMALIVATQFRFRYNHFKNGENKGKEVEIPQVERNSSTECSEETPTTTSHSQAFNFWDLIRLLCSVQYGSVLFVAWFMGFGYGFVFTFLYWHLEDLNGTTTLFGVCSVLSHVSELTAYFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPMEVLQGVTHAAIWAACISYLSAAVPPELRTSAQGILQGLHLGLGRGCGAMIGGVLVNYFGAAATFRGIGMACLVILLLFALIQWLAVPDEEEDKTMLAERIPVPSSPVPIATIDLVQQQTEDVMPRIEPRLPPKKTKHQEEQEDVNKPAWGVSSSPWVTFVYALYQIKEMMQLTRDNRASEIQPLQLHIGKEMKGDQ", "length": 744, "header": "tr|A0A4X1TE34-1|A0A4X1TE34_PIG Isoform 1 of Major facilitator superfamily domain-containing protein 6 OS=Sus scrofa OX=9823 GN=MFSD6 PE=3 SV=1 CANONICAL=A0A4X1TE34-1" }, "locus": { "chromosome": "15", "start_pos": 95099983, "end_pos": 95042590, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046021.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046021.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049499.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049499.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TE34", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TE34" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LNG3-1", "protein_name": "Major facilitator superfamily domain containing 6", "gene_name": "MFSD6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATDDKVAILTDDEEEQKRKYVLADPFNGISREPEPPSNETPSPSETAAIPEEEIDWIEKHCVKINNDLLISKVFYFFFYSAYGSLYPLLPVYYKQLGMSPSQSGLLVGIRYFIEFCSAPFWGVVADRFKKGKIVLLFSLLCWVLFNLGIGFVKPATLRCVPKIPPTVHPTNSSHPFTILPTNSSIVSFITTSPRIRDKRQLLPYGGPVMSEVGPNVTETVIFSTAPNKTSAPTLQTQTDEIIDHIVTLNSSTATSSTPPGNSARETTTSMVTTTKSVPSDRVTLVYDQQEVEAIFLVVLVVVVIGEFFSASSVTIVDTVTLQYLGKHRDRYGLQRMWGSLGWGLAMLSVGIGIDYTHVDVLIEGKGCKPPEYRNYQIVFFVFGVLMTMALIVATQFRFRYSHFKNSESKGKEVEIPQVERNNSTESSEETPTATSHSQAFSFWDLIRLLCSVQYGSVLFVAWFMGFGYGFVFTFLYWHLEDLNGTTTLFGVCSVLSHVSELTAYFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPMEVLQGVTHAAIWAACISYLSAAVPPELRTSAQGILQGLHLGLGRGCGAMIGGVLVNFFGAAATFRGIGMACLVILLLFALIQWLAVPDEEEDKTMLAERIPVPSSPVPIATIDLVQQQTEDVMPRTEPRLPPKKTKHQEEQEDVNKPAWGVSSSPWVTFAYALYQIKELMQLTRDSRASEIQPLQGTSENQKTSAAGGAQPGPCEAPPDPPRSQPSPPAAASQTQSSPAHPSVDPRAEDSEDHQAPPAAGGH", "length": 799 }, "evidence": [ { "id": "A0A4X1TE34", "url": "https://omabrowser.org/oma/group/A0A4X1TE34/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V0YAM6-1", "protein_name": "Major facilitator superfamily domain containing 6", "gene_name": "MFSD6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAADDKVAILTDDEEEQKRKYVLADPFNGISKDQDLHPQNESPSTETTTVPDEELDWLEKHCVKINNDLLISKVFYFFFYSAYGSLYPLLPVYYKQLGMSPSQSGLLVGIRYFIEFCSAPFWGVVADRFKKGKIVLLFSLLCWVLFNLGIGFVRPATLRCVPKGLPPAHPTNASSLLTTISQNTSVSSPLTAISTVSPKVRGKRDLLTSRPVTLGVTGTAAPEVTFLLPTQSGNVEFALENSTHFLLKNTTVTASPGNVTPSTTTLSATTTKPVPSDQAVLVYDQQEVEAIFLLILLVVITGEFFSASSVTIVDTVTLQYLGKHRDRYGLQRMWGSLGWGLAMLSVGIGIDYTHIEVAIEGQGCKAPEYKNYRIVFIVFGVLMTMALIVATQFRFHYTHFKQDENKRKEVEISQVDRNASNESSDNTPTTSMSQSQSFSFWDLIKLLCSIQYGSVLFVAWFMGFGYGFVFTFLYWHLEDLNGTTTLFGVCSVLSHVSELTAYFFSHKLIELVGHIRVLYIGLACNTARYIYISYLENAWTVLPMEVLQGVTHAAIWAACISYLSAAVPPELRTSAQGILQGLHLGLGRGCGAMVGGVLVNYFGPAATFRGIGMACLVILLLFALIQWLLVPDEEEEKTMLAERIPVPSSPVPIATIDLVQQQSEDVMPRTEPRLPLKKTKHQEEQEDVNKPAWGVSSSPWVTLAYAIYQIKEMVKLSKTHPLPENQPLQKISENCSALASSERQPPTATDSGQPRNCSTPTATSDSQVDGDCVALDRDAQPAAAGP", "length": 786 }, "evidence": [ { "id": "A0A4X1TE34", "url": "https://omabrowser.org/oma/group/A0A4X1TE34/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZCJ3-1", "protein_name": "Major facilitator superfamily domain-containing protein 6", "gene_name": "Mfsd6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAADDKVAILTDDEEEQKRKYVLADPFNGICRESEPPSNETPSSTETSAIPEEEIDWIEKHCVKINNDLLISKVFYFFFYSAYGSLYPLLPVYYKQLGMSPSQSGLLVGIRYFIEFCSAPFWGVVADRFKKGKIVLLFSLLCWVLFNLGIGFVKPATLRCIPKIPPTAHPTNVSHPVTILPMNSSTVAFFTTPPKSLEKRSLLFSATEPNISNIDLLSTALTLTTEPTLRPQTEGITHHVTDLILNTSTVTLPPTGNVTRETTIAVVTTTKSLPSDQVTLVYDQQEVEAIFLVILVVVIIGEFFSASSVTIVDTVTLQYLGKHRDRYGLQRMWGSLGWGLAMLSVGIGIDYTHIDVLIDGKGCKPPEYRNYQIVFIVFGVLMTMALIVATQFRFRYNHFNNSDGKGKEMEIPQVERDNSTESSEETPTAATHSQAFNFWDLIKLLCSVQYGSVLFVAWFMGFGYGFVFTFLYWHLEDLNGTTTLFGVCSVLSHVSELTAYFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPMEVLQGVTHAAIWAACISYLSAAVPPELRTSAQGILQGLHLGLGRGCGAMIGGVLVNYFGAAATFRGIGMACLVILLLFALIQWLAVPDEEEDKTMLAERIPVPSSPVPIATIDLVQQQTEDVMPHIEARLPPKKTKHQEEQEDVNKPAWGVSSSPWVTFVYALYQVKELMRLTRDSRASEIQPLQGIHENRQVSPAGGAQCAPHETHSDSPRNQLSPDTAASQMQSSPAHPSATPHGQESGQQQTQPTVGEH", "length": 794 }, "evidence": [ { "id": "A0A4X1TE34", "url": "https://omabrowser.org/oma/group/A0A4X1TE34/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q1LUQ4-1", "protein_name": "Major facilitator superfamily domain-containing protein 6-A", "gene_name": "mfsd6a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADDRVAILTEDEEELKRKHLERFDRLSLEIQSPSQPPENDVPNDTAPTPSPQHELSCCERLFLRVNRHLLVSKVFYLFFYAAYGSLHPLLALYYKQLGMNPTQSGLLVGIRYFIEFCSAPFWGIVADRYRKGKAVLLFSMLCWILFNAGIGIVKPPIMACKEETIPTTTKVPTVHPTPSNETFFPNTSSTSQMRRRRDLIGQYPWRTILSSGQSSGYISEHRIKRDSNLSFTPAPEELANTTQTNQTSTTTQPKPSTSISTSTPSSTNTTSSSTTKSTTTNPNLPPPEYNMDQVNAIFLLILLVIIIGEFFSAPAITIVDTVTLHYLGPHRDRYGLQRMWGSLGWGLAMLCIGIWIDHTSTNLIIGNMECIMKNYKNYHIAFIVFGVLMVIALIVATQFKFDVQHHDTNEGQEVGNQQENVQPRGSPGTRSTDTPTIVQAEEFHFWDLMRLLCGVQYSTVLFVAWFMGFGYGFVFTFLYWHLQDLTGTTTLFGICSVLSHVSELAAYFTSHKFIELVGHIRVLYIGLACNTARYLYISYLENAWTVLPMEVLQGITHASVWAACISYLSAAVPPPLRTSAQGILQGLHLGLGRGCGAMVGGIFVNYFGVAETFRGIGMASLVILLIFSLIMYITGQNEKKEDKMLAENIPIPSSPVPIATIDLVQNTADVAAPARPEPKLPARKTQHQQEQEDLNKPAWVPSGSPWVSVALLVYQIREMVLLAKARPTVEVQPLQGTDEVRSDSQEDQSPPVFSDAVQNENTPSGLQDHSGSPTAQLDVPTRDTQPPSQHIS", "length": 793 }, "evidence": [ { "id": "A0A4X1TE34", "url": "https://omabrowser.org/oma/group/A0A4X1TE34/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6ZSS7-1", "protein_name": "Major facilitator superfamily domain-containing protein 6", "gene_name": "MFSD6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADDKVAILTDDEEEQKRKYVLADPFNGISREPEPPSNETPSSTETSAIPEEEIDWIEKHCVKINNDLLISKVFYFFFYSAYGSLYPLLPVYYKQLGMSPSQSGLLVGIRYFIEFCSAPFWGVVADRFKKGKIVLLFSLLCWVLFNLGIGFVKPATLRCVPKIRPTTHPTNASHQLTILPTNSSFTSFLTISPKMREKRNLLETRLNVSDTVTLPTAPNMNSEPTLQPQTGEITNRMMDLTLNSSTATPVSPGSVTKETTTVIVTTTKSLPSDQVMLVYDQQEVEAIFLVILVVVIIGEFFSASSVTIVDTVTLQYLGKHRDRYGLQRMWGSLGWGLAMLSVGIGIDYTHIEVLIDGKGCKPPEYRNYQIVFIVFGVLMTMALIVATQFRFRYNHFKNDDSKGKEVEIPQVERNNSTESSEETPTTTSHSQAFNFWDLIKLLCSVQYGSVLFVAWFMGFGYGFVFTFLYWHLEDLNGTTTLFGVCSVLSHVSELTAYFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPMEVLQGVTHAAIWAACISYLSAAVPPELRTSAQGILQGLHLGLGRGCGAMIGGVLVNYFGAAATFRGIGMACLVILLLFALIQWLAVPDEEEDKTMLAERIPVPSSPVPIATIDLVQQQTEDVMPRIEPRLPPKKTKHQEEQEDVNKPAWGVSSSPWVTFVYALYQIKEMMQLTRDNRASEIQPLQGTNENRENSPAGRAQPVPCETHSDPSRNQPSPDAAASQTQTSPAHPSVDPCTEESEEQQAQLAAGGH", "length": 791 }, "evidence": [ { "id": "A0A4X1TE34", "url": "https://omabrowser.org/oma/group/A0A4X1TE34/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CBH5-1", "protein_name": "Major facilitator superfamily domain-containing protein 6", "gene_name": "Mfsd6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAADDKVAILTDDEEEQKRKYVLADPFNGICREPEPPSNETPSSTETSAIPEEEIDWIEKHCVKVNNDLLISKVFYFFFYSAYGSLYPLLPVYYKQLGMSPSQSGLLVGIRYFIEFCSAPFWGVVADRFRKGKIVLLFSLLCWVLFNLGIGFVKPATLRCLPKIPPTAHPTNVSHPVTVLPMNSSTVAFFSTPPKLLQKRDVQLSETEPNISDIDLVSTALTLTSEPTRRPQTEAITHPVTGLILNTSTVTLPPTGNVTRETTIAVVTTTKSLPSDQVTLVYDQQEVEAIFLIILVVVIIGEFFSASSVTIVDTVTLQYLGKHRDRYGLQRMWGSLGWGLAMLSVGIGIDYTHIDVLIDGKGCKPPEYRNYQIVFIVFGVLMTMALIVATQFRFRYNHFNNSDGKGKEVEIPQVERDNSTESSEETPTAATHSQAFNFWDLIKLLCSVQYGSVLFVAWFMGFGYGFVFTFLYWHLEDLNGTTTLFGVCSVLSHVSELTAYFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPMEVLQGVTHAAIWAACISYLSAAVPPELRTSAQGILQGLHLGLGRGCGAMIGGVLVNYFGAAATFRGIGMACLVILLLFALIQWLAVPDEEEDKTMLAERIPVPSSPVPIATIDLVQQQTEDVMPRVEARLPPKKTKHQEEQEDVNKPAWGVSSSPWVTFVYALYQVKELIQLTRESRASEIQPLQVTLCWASVASAPLLPPCSSKHMGNRKTGMLAKDISGLRSLCHSVYQVA", "length": 775 }, "evidence": [ { "id": "A0A4X1TE34", "url": "https://omabrowser.org/oma/group/A0A4X1TE34/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TE34", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TE34" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 183, "end_pos": 185, "annotation": "n_glycosylation_sequon" }, { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" }, { "start_pos": 263, "end_pos": 265, "annotation": "n_glycosylation_sequon" }, { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" }, { "start_pos": 423, "end_pos": 425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 485, "end_pos": 487, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1TE34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TE34" }, { "id": "PF12832", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12832" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily associated", "eco_id": "ECO_0000259", "start_pos": 72, "end_pos": 613, "start_aa": "Ser", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 172, "end_pos": 174 }, { "start_pos": 183, "end_pos": 185 }, { "start_pos": 216, "end_pos": 218 }, { "start_pos": 228, "end_pos": 230 }, { "start_pos": 263, "end_pos": 265 }, { "start_pos": 39, "end_pos": 41 }, { "start_pos": 423, "end_pos": 425 }, { "start_pos": 485, "end_pos": 487 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TPQ1-1", "uniprot_ac": "A0A4X1TPQ1", "uniprot_id": "A0A4X1TPQ1_PIG", "mass": { "chemical_mass": 42284.0, "monoisotopic_mass": 42284.0 }, "refseq": { "ac": "XP_003122255", "name": "putative methyltransferase C9orf114 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122255" }, "gene_names": [ { "name": "SPOUT1", "type": "recommended", "evidence": [ { "id": "A0A4X1TPQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1" } ] }, { "name": "SPOUT1", "type": "synonym", "evidence": [ { "id": "XP_003122255", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122255" } ] } ], "protein_names": [ { "name": "28S rRNA (uridine-N(3))-methyltransferase", "type": "recommended", "evidence": [ { "id": "A0A4X1TPQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1/entry#names_and_taxonomy" } ] }, { "name": "Centromere protein 32", "type": "synonym", "evidence": [ { "id": "A0A4X1TPQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1/entry#names_and_taxonomy" } ] }, { "name": "Kinetochore-associated protein", "type": "synonym", "evidence": [ { "id": "A0A4X1TPQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1/entry#names_and_taxonomy" } ] }, { "name": "SPOUT domain-containing methyltransferase 1", "type": "synonym", "evidence": [ { "id": "A0A4X1TPQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1/entry#names_and_taxonomy" } ] }, { "name": "putative methyltransferase C9orf114 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003122255", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122255" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPOUT1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1", "locus": { "chromosome": "1", "start_pos": 269157176, "end_pos": 269167087, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005662", "url": "https://www.ensembl.org/id/ENSSSCG00000005662" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005662", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005662", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514697", "url": "https://www.ncbi.nlm.nih.gov/gene/100514697", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003750", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003750", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029026", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029026", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514697", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514697", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FFPIHKD", "url": "https://omabrowser.org/oma/group/FFPIHKD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TPQ1", "url": "https://www.orthodb.org/?gene=A0A4X1TPQ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RR63", "url": "https://www.orthodb.org/?gene=F1RR63", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12150", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12150", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12150:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12150:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02598", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02598", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122255", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122255", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "83635", "url": "https://www.rhea-db.org/rhea/83635", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1TPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TPQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR63", "url": "https://www.uniprot.org/uniprotkb/F1RR63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR63-1", "url": "https://www.uniprot.org/uniprotkb/F1RR63-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAERARKRPCGPGEHGQRVEWRKWKQQKKEEKKKWKDLKMMKKLERQRAQEEQAKRQQEEEEAAAQREDRGRHYTLSVALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDEEGQDAKTVEGEFRGVGKKGQACVQLARILQYLECPQYLRKAFFPKHQDLQFAGLLNPLDSPHHMRQDEDSEFREGVVVDRPTRPGQGSFVNCGMKKEVKIDKNLEPGLRVTVWLNQKQLPESKTYRGKVVSSQDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQLPNFRHALVVFGGLQGLEAAVDADPNLEVAEPSVLFDLYVNTCPSQGSRTIRTEEAILISLAALQPGLTQAGARPS", "length": 377, "header": "tr|A0A4X1TPQ1-1|A0A4X1TPQ1_PIG Isoform 1 of 28S rRNA (uridine-N(3))-methyltransferase OS=Sus scrofa OX=9823 GN=SPOUT1 PE=3 SV=1 CANONICAL=A0A4X1TPQ1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TPQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1/entry#A0A4X1TPQ1-1", "sequence": { "sequence": "MAERARKRPCGPGEHGQRVEWRKWKQQKKEEKKKWKDLKMMKKLERQRAQEEQAKRQQEEEEAAAQREDRGRHYTLSVALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDEEGQDAKTVEGEFRGVGKKGQACVQLARILQYLECPQYLRKAFFPKHQDLQFAGLLNPLDSPHHMRQDEDSEFREGVVVDRPTRPGQGSFVNCGMKKEVKIDKNLEPGLRVTVWLNQKQLPESKTYRGKVVSSQDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQLPNFRHALVVFGGLQGLEAAVDADPNLEVAEPSVLFDLYVNTCPSQGSRTIRTEEAILISLAALQPGLTQAGARPS", "length": 377, "header": "tr|A0A4X1TPQ1-1|A0A4X1TPQ1_PIG Isoform 1 of 28S rRNA (uridine-N(3))-methyltransferase OS=Sus scrofa OX=9823 GN=SPOUT1 PE=3 SV=1 CANONICAL=A0A4X1TPQ1-1" }, "locus": { "chromosome": "1", "start_pos": 269167070, "end_pos": 269157883, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047700.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047700.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049445.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049445.2" } ] } }, { "isoform_ac": "F1RR63-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1/entry#F1RR63-1", "sequence": { "sequence": "MAERARKRPCGPGEHGQRVEWRKWKQQKKEEKKKWKDLKMMKKLERQRAQEEQAKRQQEEEEAAAQREDRGRHYTLSVALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDEEGQDAKTVEGEFRGVGKKGQACVQLARILQYLECPQYLRKAFFPKHQDLQFAGLLNPLDSPHHMRQDEDSEFREGVVVDRPTRPGQGSFVNCGMKKEVKIDKNLEPGLRVTVWLNQKQLPESKTYRGKVVSSQDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQLPNFRHALVVFGGLQGLEAAVDADPNLEVAEPSVLFDLYVNTCPSQGSRTIRTEVSPPASLASRPSLFSHQQGAGASGSVHGGVAPLSLSPPHPRPP", "length": 398, "header": "tr|F1RR63-1|A0A4X1TPQ1_PIG Computationally mapped isoform of 28S rRNA (uridine-N(3))-methyltransferase OS=Sus scrofa OX=9823 GN=SPOUT1 PE=3 SV=4 CANONICAL=A0A4X1TPQ1-1" }, "locus": { "chromosome": "1", "start_pos": 269167070, "end_pos": 269158847, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006225.4", "url": "https://www.ensembl.org/id/ENSSSCT00000006225.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006066.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006066.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RR63", "url": "https://www.uniprot.org/uniprotkb/F1RR63" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514697", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514697", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2QC59-1", "protein_name": "28S rRNA (uridine-N(3))-methyltransferase", "gene_name": "Spout1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAERPGKRPCGPGEHGQRVEWRKWKQQKKEEKKKWKDLKIMKKLERQRAQEKQAKRQEEEEEAAAQRSNQGRPYTLSVALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDEEGQDTKSVEGEFRGVGKKGQACVQLARILQYLECPQYLRKAFFPKHQDLQFAGILNPLDSPHHMRQDEESEFREGVVVDRPTKAGHGSLVNCGMKKEVKIDKKLDPGLRVTVRLNQQQLPECKTYKGTVVSSQDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSSVASTQLPNFRHALVVFGGLQGLEAGVDADPNLEVADPSVLFDFYVNTCPSQGSRTIRTEEAILISLAALQPGLTQGGARPT", "length": 377 }, "evidence": [ { "id": "A0A4X1TPQ1", "url": "https://omabrowser.org/oma/group/A0A4X1TPQ1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1Z830-1", "protein_name": "28S rRNA (uridine-N(3))-methyltransferase", "gene_name": "ptch", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MKTMLAAPTASSNGRPIGPHKSWKKVNEERKALKRQRKQDKLLKELQQAKEAESQAGKAANEVQAKDKPNPSTLSIAVPGSILENAQSNELRAYVAGQIARAACIFRVNEVIVFDDVGIATARETKRSYEADGEGSSTGTVRSSSLQLARILQYLECPQYLRKYFFPLHKDLKYSGLLNPLDTPHHLRQQSKFRYREGVICDKKAKEGHSYANVGLLNDVLVDKAIEPGVRVTVKMEPQSESCRKQRGTLVSPDEPRRETGVYWGYQVRIAHSMSEIFTKSPYATGYDVTVGTSDRGTNVHEVPNRSYNFNHMLIVFGGLQGLESALANDEKLTVDDPELLFDHYVNVLPRQGSRTIRTEEALLIALAALQEKLQPQVADVEIDLTDLLPKSEDSGIAVRRDVLVSKKQKKRKQVEDTPDETVVDEPSFSKPLPKVARLTANPFADSSEELAKNTPAQDDFEVVSSTTVSGTSHSCADDDLSRFD", "length": 485 }, "evidence": [ { "id": "A0A4X1TPQ1", "url": "https://omabrowser.org/oma/group/A0A4X1TPQ1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q3UHX9-1", "protein_name": "28S rRNA (uridine-N(3))-methyltransferase", "gene_name": "Spout1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAERPRKRPCGPGEHGQRVEWRKWKQQKKEEKKKWKDLKIMKKLERQRAQEEEAKRQEEEEEAAAQRSNQGRPYTLSVALPGSILDNAQSPELRTYLAGQIARACTIFCVDEIVVFDEEGQDTKSVEGEFRGVGKKGQACVQLARILQYLECPQYLRKAFFPKHQDLQFAGILNPLDSPHHMRQDEESEFREGVVVDRPTKAGHGSLVNCGMKKEVKIDKKLDPGLRVTVRLNQQQLPECKTYKGTVVSSQDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQLPSFRHALVVFGGLQGLEAAVDADPNLEVADPSVLFDFYVNTCLSQGSRTIRTEEAILISLAALQPGLTQVGSRPASPLSGPRM", "length": 385 }, "evidence": [ { "id": "A0A4X1TPQ1", "url": "https://omabrowser.org/oma/group/A0A4X1TPQ1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5T280-1", "protein_name": "28S rRNA (uridine-N(3))-methyltransferase", "gene_name": "SPOUT1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAERGRKRPCGPGEHGQRIEWRKWKQQKKEEKKKWKDLKLMKKLERQRAQEEQAKRLEEEEAAAEKEDRGRPYTLSVALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDEEGQDAKTVEGEFTGVGKKGQACVQLARILQYLECPQYLRKAFFPKHQDLQFAGLLNPLDSPHHMRQDEESEFREGIVVDRPTRPGHGSFVNCGMKKEVKIDKNLEPGLRVTVRLNQQQHPDCKTYHGKVVSSQDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQLPNFRHALVVFGGLQGLEAGADADPNLEVAEPSVLFDLYVNTCPGQGSRTIRTEEAILISLAALQPGLIQAGARHT", "length": 376 }, "evidence": [ { "id": "A0A4X1TPQ1", "url": "https://omabrowser.org/oma/group/A0A4X1TPQ1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q66ID3-1", "protein_name": "28S rRNA (uridine-N(3))-methyltransferase", "gene_name": "spout1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADEPSEKKNKPNTLSNKEGEERKNWKKWKEQKKEEKRRRKETKLIQQLEKQKLKKEEENQQQVKQEEKESKGRLYTVSVALPGSVMDNAQSPELRTYLAGQIARACAVFCVDEVVIFDELGEDAKSVEGEFKGVGKKGQSCVQLARILQYLECPQYLRKFFFPKHQDLQFAGLLNPLDSPHHMRIDEEAEFREGVVLDRPVKAGKGSFVNCGMRKEVQIDKQLKTGLRVTVQLNESQNKDGRVYKGVVVAPHIPRTEAGLYWGYSVRLASCLSAVFSECPYKEGYDLTIGTSEKGQNTDHVTLPAFRHMLVVFGGLQGLEASVDADENLTISDPSVLFDLYLNTCPAQGSRTIRTEEALLISLSGLRQKIASTFPDPPTG", "length": 381 }, "evidence": [ { "id": "A0A4X1TPQ1", "url": "https://omabrowser.org/oma/group/A0A4X1TPQ1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1" } ], "pmid": "" }, { "name": "kinetochore", "id": "GO:0000776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000776", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1" } ], "pmid": "" }, { "name": "spindle pole centrosome", "id": "GO:0031616", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031616", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1" } ], "pmid": "" }, { "name": "mitotic spindle", "id": "GO:0072686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072686", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "methyltransferase activity", "id": "GO:0008168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008168", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1" } ], "pmid": "" }, { "name": "miRNA binding", "id": "GO:0035198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035198", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1" } ], "pmid": "" }, { "name": "rRNA (uridine-N3-)-methyltransferase activity", "id": "GO:0070042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070042", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1" } ], "pmid": "" }, { "name": "S-adenosyl-L-methionine binding", "id": "GO:1904047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904047", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1" } ], "pmid": "" }, { "name": "maintenance of centrosome location", "id": "GO:0051661", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051661", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1" } ], "pmid": "" }, { "name": "miRNA processing", "id": "GO:0035196", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035196", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1" } ], "pmid": "" }, { "name": "rRNA base methylation", "id": "GO:0070475", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070475", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TPQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPQ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "83635", "name": "", "equation": "uridine in 28S rRNA + 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Pathway" ] }, { "id": "R-SSC-72706", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975956", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975957", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954714", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954716", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001090946", "url": 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PE=1 SV=1 CANONICAL=A0A4X1T0H0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1T0H0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T0H0/entry#A0A4X1T0H0-1", "sequence": { "sequence": "MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY", "length": 217, "header": "tr|A0A4X1T0H0-1|A0A4X1T0H0_PIG Isoform 1 of Ribosomal protein OS=Sus scrofa OX=9823 GN=RPL10A PE=1 SV=1 CANONICAL=A0A4X1T0H0-1" }, "locus": { "chromosome": "7", "start_pos": 31330586, "end_pos": 31327824, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045474.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045474.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059535.3", "url": "https://www.ensembl.org/id/ENSSSCP00000059535.3" } ] } }, { "isoform_ac": "F1RYZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T0H0/entry#F1RYZ5-1", "sequence": { "sequence": "ISCSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY", "length": 219, "header": "tr|F1RYZ5-1|A0A4X1T0H0_PIG Computationally mapped isoform of Ribosomal protein OS=Sus scrofa OX=9823 GN=RPL10A PE=1 SV=3 CANONICAL=A0A4X1T0H0-1" }, "locus": { "chromosome": "7", "start_pos": 31330586, "end_pos": 31328178, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001720.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001720.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001676.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001676.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RYZ5", "url": "https://www.uniprot.org/uniprotkb/F1RYZ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100037993", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100037993", "resource": "KEGG Pathway" }, { "id": "R-SSC-156827", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "resource": "Reactome", "description": "L13a-mediated translational silencing of Ceruloplasmin expression" }, { "id": "R-SSC-1799339", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "resource": "Reactome", "description": "SRP-dependent cotranslational protein targeting to membrane" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" }, { "id": "R-SSC-72689", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "resource": "Reactome", "description": "Formation of a pool of free 40S subunits" }, { "id": "R-SSC-72706", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "resource": "Reactome", "description": "GTP hydrolysis and joining of the 60S ribosomal subunit" }, { "id": "R-SSC-975956", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" }, { "id": "R-SSC-975957", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" }, { "id": "R-SSC-9954709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "resource": "Reactome", "description": "Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide" }, { "id": "R-SSC-9954714", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "resource": "Reactome", "description": "PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA" }, { "id": "R-SSC-9954716", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "resource": "Reactome", "description": "ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA" } ], "orthologs": [ { "uniprot_canonical_ac": "F6SU35-1", "protein_name": "Ribosomal protein", "gene_name": "RPL10A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSSKVSRDTLYEAVKEVLQGSKTKKRKFVETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCLLGDQQHCDEAKAVEIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTEDELVYNIHLAINFLVSLLKKNWQNVRALYIKSTMGKPQRLY", "length": 217 }, "evidence": [ { "id": "A0A4X1T0H0", "url": "https://omabrowser.org/oma/group/A0A4X1T0H0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P0CX43-1", "protein_name": "Large ribosomal subunit protein uL1A", "gene_name": "RPL1A", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY", "length": 217 }, "evidence": [ { "id": "A0A4X1T0H0", "url": "https://omabrowser.org/oma/group/A0A4X1T0H0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX44-1", "protein_name": "Large ribosomal subunit protein uL1B", "gene_name": "RPL1B", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY", "length": 217 }, "evidence": [ { "id": "A0A4X1T0H0", "url": "https://omabrowser.org/oma/group/A0A4X1T0H0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY", "length": 217 }, "evidence": [ { "id": "A0A4X1T0H0", "url": "https://omabrowser.org/oma/group/A0A4X1T0H0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P62907-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "Rpl10a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY", "length": 217 }, "evidence": [ { "id": "A0A4X1T0H0", "url": "https://omabrowser.org/oma/group/A0A4X1T0H0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5E9E6-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY", "length": 217 }, "evidence": [ { "id": "A0A4X1T0H0", "url": "https://omabrowser.org/oma/group/A0A4X1T0H0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZT82", "url": "https://www.uniprot.org/uniprotkb/A0A286ZT82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZT82-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZT82-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SYU3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SYU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SYU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SYU3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCD3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCD3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGTPTPRPSLIWLPWGNAASEPKALGLCWLSSPWLPTNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS", "length": 239, "header": "tr|A0A4X1SYU3-1|A0A4X1SYU3_PIG Isoform 1 of Transgelin OS=Sus scrofa OX=9823 GN=TAGLN PE=1 SV=1 CANONICAL=A0A4X1SYU3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZT82-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SYU3/entry#A0A286ZT82-1", "sequence": { "sequence": "MITLPGFSCEHKMSAFEKCLAGSRSSGKLPTNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS", "length": 233, "header": "tr|A0A286ZT82-1|A0A4X1SYU3_PIG Computationally mapped isoform of Transgelin OS=Sus scrofa OX=9823 GN=TAGLN PE=1 SV=1 CANONICAL=A0A4X1SYU3-1" }, "locus": { "chromosome": "9", "start_pos": 44566944, "end_pos": 44561280, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042087.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042087.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034673.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034673.2" } ] } }, { "isoform_ac": "A0A4X1SYU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SYU3/entry#A0A4X1SYU3-1", "sequence": { "sequence": "MGTPTPRPSLIWLPWGNAASEPKALGLCWLSSPWLPTNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS", "length": 239, "header": "tr|A0A4X1SYU3-1|A0A4X1SYU3_PIG Isoform 1 of Transgelin OS=Sus scrofa OX=9823 GN=TAGLN PE=1 SV=1 CANONICAL=A0A4X1SYU3-1" }, "locus": { "chromosome": "9", "start_pos": 44566944, "end_pos": 44564666, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055649.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055649.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049288.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049288.1" } ] } }, { "isoform_ac": "A0A8W4FCD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SYU3/entry#A0A8W4FCD3-1", "sequence": { "sequence": "EPPWAEGTSPAQLPTNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS", "length": 217, "header": "tr|A0A8W4FCD3-1|A0A4X1SYU3_PIG Computationally mapped isoform of Transgelin OS=Sus scrofa OX=9823 GN=TAGLN PE=1 SV=1 CANONICAL=A0A4X1SYU3-1" }, "locus": { "chromosome": "9", "start_pos": 44566944, "end_pos": 44565303, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104351.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104351.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077063.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077063.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FCD3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCD3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SYU3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SYU3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "epithelial cell differentiation", "id": "GO:0030855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030855", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SYU3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SYU3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": 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scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T4E0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T4E0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KLHL18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T4E0", "locus": { "chromosome": "13", "start_pos": 30141513, "end_pos": 30063188, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024513", "url": "https://www.ensembl.org/id/ENSSSCG00000024513" } ] } } ], "crossref": [ { "id": "A0A4X1T4E0", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1T4E0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024513", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024513", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18247", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18247", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18457", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18457", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100736900", "url": "https://www.ncbi.nlm.nih.gov/gene/100736900", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030603", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030603", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DRWTIVT", "url": "https://omabrowser.org/oma/group/DRWTIVT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412:SF497", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412:SF497", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020924383", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924383", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZV45", "url": "https://www.uniprot.org/uniprotkb/A0A286ZV45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZV45-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZV45-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T4E0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T4E0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T4E0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T4E0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RC00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RC00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RC00-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RC00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LI83", "url": "https://www.uniprot.org/uniprotkb/I3LI83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LI83-1", "url": "https://www.uniprot.org/uniprotkb/I3LI83-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVEDGAEELEDLVHFSVSELPSRGYGVMEEIRRQGKLCDVTLKIGDHKFSAHRIVLAASIPYFHAMFTNDMMECKQDEIVMQGMDPSALEALINFAYNGHLAIDQQNVQSLLMGASFLQLQSIKDACCTFLRERLHPKNCLGVRQFAETMMCAVLYDAANSFIHQHFVEVSMSEEFLALPLEDVLELVSRDELNVKSEEQVFEAALAWVRYDREQRGPYLPELLSNIRLPLCRPQFLSDRVQQDDLVRCCHKCRDLVDEAKDYHLMPERRPHLPAFRTRPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPIANRWEKCHPMTTARSRVGVAVVNGLLYAIGGYDGQLRLSTVEVYNPETDTWTRVGSMNSKRSAMGTVVLDGQIYVCGGYDGNSSLNSVETYSPETDKWTVVTPMSSNRSAAGVTVFEGRIYVSGGHDGLQIFNSVEHYNHHTATWHSAAGMLNKRCRHGAASLGSKMFVCGGYDGSGFLSIAEVYSSVADQWCLIVPMHTRRSRVSLVASCGRLYAVGGYDGQSNLSSVEMYDPDTDRWTFMAPMACHEGGVGVGCIPLLTI", "length": 574, "header": "tr|A0A4X1T4E0-1|A0A4X1T4E0_PIG Isoform 1 of Kelch like family member 18 OS=Sus scrofa OX=9823 GN=KLHL18 PE=4 SV=1 CANONICAL=A0A4X1T4E0-1" }, "isoforms": [ { "isoform_ac": "A0A286ZV45-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T4E0/entry#A0A286ZV45-1", "sequence": { "sequence": "MVEDGAEELEDLVHFSVSELPSRGYGVMEEIRRQGKLCDVTLKIGDHKFSAHRIVLAASIPYFHAMFTNDMMECKQDEIVMQGMDPSALEALINFAYNGHLAIDQQNVQSLLMGASFLQLQSIKDACCTFLRERWWVAVVITFFHVRLLLVPEEPKESTQIAQGGRFRISSGCPWPWLHPKNCLGVRQFAETMMCAVLYDAANSFIHQHFVEVSMSEEFLALPLEDVLELVSRDELNVKSEEQVFEAALAWVRYDREQRGPYLPELLSNIRLPLCRPQFLSDRVQQDDLVRCCHKCRDLVDEAKDYHLMPERRPHLPAFRTRPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPIANRWEKCHPMTTARSRVGVAVVNGLLYAIGGYDGQLRLSTVEVYNPETDTWTRVGSMNSKRSAMGTVVLDGQIYVCGGYDGNSSLNSVETYSPETDKWTVVTPMSSNRSAAGVTVFEGRIYVSGGHDGLQIFNSVEHYNHHTATWHSAAGMLNKRCRHGAASLGSKMFVCGGYDGSGFLSIAEVYSSVADQWCLIVPMHTRRSRVSLVASCGRLYAVGGYDGQSNLSSVEMYDPDTDRWTFMAPMACHEGGVGVGCIPLLTI", "length": 617, "header": "tr|A0A286ZV45-1|A0A4X1T4E0_PIG Computationally mapped isoform of Kelch like family member 18 OS=Sus scrofa OX=9823 GN=KLHL18 PE=4 SV=2 CANONICAL=A0A4X1T4E0-1" }, "locus": { "chromosome": "13", "start_pos": 30138677, "end_pos": 30063209, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066220.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066220.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035325.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035325.2" } ] } }, { "isoform_ac": "A0A4X1T4E0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T4E0/entry#A0A4X1T4E0-1", "sequence": { "sequence": "MVEDGAEELEDLVHFSVSELPSRGYGVMEEIRRQGKLCDVTLKIGDHKFSAHRIVLAASIPYFHAMFTNDMMECKQDEIVMQGMDPSALEALINFAYNGHLAIDQQNVQSLLMGASFLQLQSIKDACCTFLRERLHPKNCLGVRQFAETMMCAVLYDAANSFIHQHFVEVSMSEEFLALPLEDVLELVSRDELNVKSEEQVFEAALAWVRYDREQRGPYLPELLSNIRLPLCRPQFLSDRVQQDDLVRCCHKCRDLVDEAKDYHLMPERRPHLPAFRTRPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPIANRWEKCHPMTTARSRVGVAVVNGLLYAIGGYDGQLRLSTVEVYNPETDTWTRVGSMNSKRSAMGTVVLDGQIYVCGGYDGNSSLNSVETYSPETDKWTVVTPMSSNRSAAGVTVFEGRIYVSGGHDGLQIFNSVEHYNHHTATWHSAAGMLNKRCRHGAASLGSKMFVCGGYDGSGFLSIAEVYSSVADQWCLIVPMHTRRSRVSLVASCGRLYAVGGYDGQSNLSSVEMYDPDTDRWTFMAPMACHEGGVGVGCIPLLTI", "length": 574, "header": "tr|A0A4X1T4E0-1|A0A4X1T4E0_PIG Isoform 1 of Kelch like family member 18 OS=Sus scrofa OX=9823 GN=KLHL18 PE=4 SV=1 CANONICAL=A0A4X1T4E0-1" }, "locus": { "chromosome": "13", "start_pos": 30138677, "end_pos": 30063209, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057792.1", "url": "https://www.ensembl.org/id/ENSSSCT00000057792.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044126.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044126.1" } ] } }, { "isoform_ac": "A0A5G2RC00-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T4E0/entry#A0A5G2RC00-1", "sequence": { "sequence": "MVEDGAEELEDLVHFSVSELPSRGYGVMEEIRRQGKLCDVTLKIGDHKFSAHRIVLAASIPYFHAMFTNDMMECKQDEIVMQGMDPSALEALINFAYNGHLAIDQQNVQSLLMGASFLQLQSIKDACCTFLRERLHPKNCLGVRQFAETMMCAVLYDAANSFIHQHFVEVSMSEEFLALPLEDVLELVSRDELNVKSEEQVFEAALAWVRYDREQRGPYLPELLSNIRLPLCRPQFLSDRVQQDDLVRCCHKCRDLVDEAKDYHLMPERRPHLPAFRTRPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPIANRWEKCHPMTTARSRVGVAVVNGLLYAIGGYDGQLRLSTVEVYNPETDTWTRVGSMNSKRRWTVVTPMSSNRSAAGVTVFEGRIYVSGGHDGLQIFNSVEHYNHHTATWHSAAGMLNKRCRHGAASLGSKMFVCGGYDGSGFLSIAEVYSSVADQWCLIVPMHTRRSRVSLVASCGRLYAVGGYDGQSNLSSVEMYDPDTDRWTFMAPMACHEGGVGVGCIPLLTI", "length": 539, "header": "tr|A0A5G2RC00-1|A0A4X1T4E0_PIG Computationally mapped isoform of Kelch like family member 18 OS=Sus scrofa OX=9823 GN=KLHL18 PE=4 SV=1 CANONICAL=A0A4X1T4E0-1" }, "locus": { "chromosome": "13", "start_pos": 30138677, "end_pos": 30063209, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078177.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078177.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073885.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073885.1" } ] } }, { "isoform_ac": "I3LI83-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T4E0/entry#I3LI83-1", "sequence": { "sequence": "MVEDGAEELEDLVHFSVSELPSRGYGVMEEIRRQGKLCDVTLKIGDHKFSAHRIVLAASIPYFHAMFTNDMMECKQDEIVMQGMDPSALEALINFAYNGHLAIDQQNVQSLLMGASFLQLQSIKDACCTFLRERLHPKNCLGVRQFAETMMCAVLYDAANSFIHQHFVEVSMSEEFLALPLEDVLELVSRDELNVKSEEQVFEAALAWVRYDREQRGPYLPELLSNIRLPLCRPQFLSDRVQQDDLVRCCHKCRDLVDEAKDYHLMPERRPHLPAFRTRPRCCTSIAGLIYAVGGLNSAANFYAGDSLNVVEVFDPIANRWEKCHPMTTARSRVGVAVVNGLLYAIGGYDGQLRLSTVEVYNPETDTWTRVGSMNSKRSAMGTVVLDGQIYVCGGYDGNSSLNSVETYSPETDKWTVVTPMSSNRSAAGVTVFEGRIYVSGGHDGLQIFNSVEHYNHHTATWHSAAGMLNKRCRHGAASLGSKMFVCGGYDGSGFLSIAEVYSSVADQWCLIVPMHTRRSRVSLVASCGRLYAVGGYDGQSNLSSVEMYDPDTDRWTFMAPMACHEGGVGVGCIPLLTI", "length": 579, "header": "tr|I3LI83-1|A0A4X1T4E0_PIG Computationally mapped isoform of Kelch like family member 18 OS=Sus scrofa OX=9823 GN=KLHL18 PE=4 SV=3 CANONICAL=A0A4X1T4E0-1" }, "locus": { "chromosome": "13", "start_pos": 30138677, "end_pos": 30063209, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027575.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027575.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023783.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023783.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LI83", "url": "https://www.uniprot.org/uniprotkb/I3LI83" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HPZ8-1", "protein_name": "Kelch-like protein 18 isoform X2", "gene_name": "Klhl18", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVEDGAEELEDLVHFSVSELPSRGYGVMEEIRRQGKLCDVTLKIGDHKFSAHRIVLAASIPYFHAMFTNDMMECKQDEIVMQGMDPSALEALINFAYNGNLAIDQQNVQSLLMGASFLQLQSIKDACCTFLRERLHPKNCLGVRQFAETMMCAVLYDAANSFIHQHFVEVSLSEEFLALPLEDVLELVSRDELNVKSEEQVFEAALAWVRYDREKREPCLPELLSNIRLPLCRPQFLSDRVQQDDLVRCCHKCRDLVDEAKDYHLMPERRPHLPAFRTRPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPIANRWEKCHPMTTARSRVGVAVVNGLLYAIGGYDGQLRLSTVEAYNPETDTWTRVGSMNSKRSAMGTVVLDGQIYVCGGYDGNSSLNSVETYSPETDKWTVVTPMSSNRSAAGVTIFEGRIYVSGGHDGLQIFNSVEHYNHHTATWHPAASMLNKRCRHGAASLGSKMFVCGGYDGSGFLSIAEMYSSVADQWCLIVPMHTRRSRVSLVASCGRLYAVGGYDGQSNLSSVEMYDPETDRWTFMAPMACHEGGVGVGCIPLLTI", "length": 574 }, "evidence": [ { "id": "A0A4X1T4E0", "url": "https://omabrowser.org/oma/group/A0A4X1T4E0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I5ZLS4-1", "protein_name": "Kelch-like family member 18", "gene_name": "Klhl18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVEDGAEELEDLVHFSVSELPSRGYGVMEEIRRQGKLCDVTLKIGDHKFSAHRIVLAASIPYFHAMFTNDMMECKQDEIVMQGMDPSALEALINFAYNGNLAIDQQNVQSLLMGASFLQLQSIKDACCTFLRERLHPKNCLGVRQFAETMMCAVLYDAANSFIHQHFVEVSLSEEFLALPLEDVLELLSRDELNVKSEEQVFEAALAWIRYDREQRGPCLPELLSNIRLPLCRPQFLSDRVQQDDLVRCCHKCRDLVDEAKDYHLMPERRPHLPAFRTRPRCCTSIAGLIYAVGGLNSAANFYAGDSLNVVEVFDPIANRWEKCHPMTTARSRVGVAVVNGLLYAIGGYDGQLRLSTVEAYNPETDTWTRVGSMNSKRSAMGTVVLDGQIYVCGGYDGNSSLNSVETYSPETDKWTVVTPMSSNRSAAGVTVFEGRIYVSGGHDGLQIFSSVEQYNHHTATWHPAASMLNKRCRHGAASLGSKMFVCGGYDGSGFLSIAEMYSSVADQWCLIVPMHTRRSRVSLVASCGRLYAVGGYDGQSNLSSVEMYDPETDRWTFMAPMACHEGGVGVGCIPLLTI", "length": 579 }, "evidence": [ { "id": "A0A4X1T4E0", "url": "https://omabrowser.org/oma/group/A0A4X1T4E0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9Q4F2-1", "protein_name": "Kelch-like protein 18", "gene_name": "Klhl18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVEDGAEELEDLVHFSVSELPSRGYGVMEEIRRQGKLCDVTLKIGDHKFSAHRIVLAASIPYFHAMFTNDMMECKQDEIVMQGMDPSALEALINFAYNGNLAIDQQNVQSLLMGASFLQLQSIKDACCTFLRERLHPKNCLGVRQFAETMMCAVLYDAANSFIHQHFVEVSLSEEFLALPLEDVLELVSRDELNVKSEEQVFEAALAWVRYDREQRGPCLPELLSNIRLPLCRPQFLSDRVQQDDLVRCCHKCRDLVDEAKDYHLMPERRPHLPAFRTRPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPIANRWEKCHPMTTARSRVGVAVVNGLLYAIGGYDGQLRLSTVEAYNPETDTWTRVGSMNSKRSAMGTVVLDGQIYVCGGYDGNSSLNSVETYSPETDKWTVVTPMSSNRSAAGVTVFEGRIYVSGGHDGLQIFSSVEHYNHHTATWHPAASMLNKRCRHGAASLGSKMFVCGGYDGSGFLSIAEMYSSVADQWCLIVPMHTRRSRVSLVASCGRLYAVGGYDGQSNLSSVEMYDPETDRWTFMAPMACHEGGVGVGCIPLLTI", "length": 574 }, "evidence": [ { "id": "A0A4X1T4E0", "url": "https://omabrowser.org/oma/group/A0A4X1T4E0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O94889-1", "protein_name": "Kelch-like protein 18", "gene_name": "KLHL18", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVEDGAEELEDLVHFSVSELPSRGYGVMEEIRRQGKLCDVTLKIGDHKFSAHRIVLAASIPYFHAMFTNDMMECKQDEIVMQGMDPSALEALINFAYNGNLAIDQQNVQSLLMGASFLQLQSIKDACCTFLRERLHPKNCLGVRQFAETMMCAVLYDAANSFIHQHFVEVSMSEEFLALPLEDVLELVSRDELNVKSEEQVFEAALAWVRYDREQRGPYLPELLSNIRLPLCRPQFLSDRVQQDDLVRCCHKCRDLVDEAKDYHLMPERRPHLPAFRTRPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPIANCWERCRPMTTARSRVGVAVVNGLLYAIGGYDGQLRLSTVEAYNPETDTWTRVGSMNSKRSAMGTVVLDGQIYVCGGYDGNSSLSSVETYSPETDKWTVVTSMSSNRSAAGVTVFEGRIYVSGGHDGLQIFSSVEHYNHHTATWHPAAGMLNKRCRHGAASLGSKMFVCGGYDGSGFLSIAEMYSSVADQWCLIVPMHTRRSRVSLVASCGRLYAVGGYDGQSNLSSVEMYDPETDCWTFMAPMACHEGGVGVGCIPLLTI", "length": 574 }, "evidence": [ { "id": "A0A4X1T4E0", "url": "https://omabrowser.org/oma/group/A0A4X1T4E0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VGE5-1", "protein_name": "Kelch-like protein diablo", "gene_name": "KLHL18", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDLSDNSQVEDQYFVYKHDKLFGESFPLFKEIRRMGKLCDVTLKVEDQTFSAHRVVLAATIPYFYAMFTNNMAESRIKEITMKESAIEPSALESLINYVYSGQVRIDNQNVQNLMVGASFLQLSNVRDACASFLISRFHPHNVLGIRTFADSMICRQLIDAADKYIDQNFAKVSQSEEFLALDCEQLLELMRRDELNVRTEEVIFEACMKWVKYAEDKRSELFPQVLAAVRLPLLSPQFLADRVAREELIRSSHQCRDLLDEAKDFHLMPERRGLLQSFRTRQRSGEFFTGQIYAVGGLASTGESVSTVEIYDPLTKKWKMGEQMSMMRSRVGVAVLNGKLYAFGGFNGTERLSTVEVYDPRKNKWSQGCAMLCKRSAVGVAALDDCIYVCGGYDGVTSLNTVEVYYPKSNTWKTVAQMMKYRSAGGVTQLNGYVYALGGHDGLSIFDSVERYDQAEDVWVKMSPMLNRRCRLGVATLNGKIYVCGGYCGNSFLRSVECYDPQTDTWKLVTPMNCKRSRVALAANMGKLWAIGGYDGESNLSTVEVYDPETDKWTFMPPMCAHSGGVGAGVIRIE", "length": 575 }, "evidence": [ { "id": "A0A4X1T4E0", "url": "https://omabrowser.org/oma/group/A0A4X1T4E0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T4E0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T4E0" } ], "pmid": "" }, { "name": "positive regulation of mitotic cell cycle phase transition", "id": "GO:1901992", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901992", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T4E0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T4E0" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T4E0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T4E0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T4E0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T4E0" } ], "pmid": "" }, { "name": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TV79-1", "uniprot_ac": "A0A4X1TV79", "uniprot_id": "A0A4X1TV79_PIG", "mass": { "chemical_mass": 83021.0, "monoisotopic_mass": 83021.0 }, "refseq": { "ac": "XP_020949923", "name": "probable C-mannosyltransferase DPY19L3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949923" }, "gene_names": [ { "name": "DPY19L3", "type": "recommended", "evidence": [ { "id": "A0A4X1TV79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV79" } ] }, { "name": "DPY19L3", "type": "synonym", "evidence": [ { "id": "XP_020949923", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949923" } ] } ], "protein_names": [ { "name": "Dpy-19 like C-mannosyltransferase 3", "type": "synonym", "evidence": [ { "id": "A0A4X1TV79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV79/entry#names_and_taxonomy" } ] }, { "name": "probable C-mannosyltransferase DPY19L3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020949923", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949923" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TV79", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV79" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DPY19L3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV79", "locus": { "chromosome": "6", "start_pos": 42414830, "end_pos": 42334736, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022521", "url": "https://www.ensembl.org/id/ENSSSCG00000022521" } ] } } ], "crossref": [ { "id": "ENSSSCG00000022521", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022521", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20181", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20181", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100621064", "url": "https://www.ncbi.nlm.nih.gov/gene/100621064", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018732", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018732", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100621064", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621064", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1TV79", "url": "https://www.orthodb.org/?gene=A0A4X1TV79", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31488", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31488", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31488:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31488:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10034", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10034", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020949923", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020949923", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A2C6", "url": "https://www.uniprot.org/uniprotkb/A0A287A2C6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2C6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2C6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TV79", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TV79-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV79-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISIRQRKGIKTTEVSEDCAAQEENVKLENKLPSSCTNRRLWKILSFTIGGTVALCIGLLTSVYLATLHENDLWFSNIKEVEREISFRTECGLYYSYYKQMLQAPTLMQGFHGLIYDNKTESMRTINLLQRMNIYQEVFLGILYRVLPIQKYLEPVYFYIYTLFGLQAIYVTALYITSWLLSGTWLSGLLAAFWYVTNRIDTTRVEFTIPLRENWALPFFAIQIAAITYFLRPNLQPLSQRLTLLAIFTSTFLFSLTWQFNQFMMLMQALVLFTLDSLDMLPAVKVTWLYGIQLTGLLLVCILQFFNSMILGSLLISFNLSVLIARKIQKNLKTGSFLNRLGKLLLHLFVVLCLTLFLNNIIKRILNLKSDEHIFKFLKAKFGFGATRDFDANLYLCEEAFGLLPLNTFERLSDTLLFYAYIFVLSITVTAALAVAFRNLSDSTNQQSMGKIGKSSIGLKPETAYNLIHTILFGFLALSTMRMKYLWTSHMCVFASFGLCSPEIWELLLKLIHLYNPKRICIMRYSIPILILLYLCYKFWPGMMDELSELREFYDPDTVELMNWINSNTPRKAVFAGSMQLLAGVKLCTGRTLTNHPHYEDNSLRERTRAVYQIYAKRPPEEVHALLRSFGTDYVILEDSICYERRHRRGCRLRDLLDVANGHMMDGPGENDPDLKLAGHPRFCEEIKRNLPPYTAYFTRVFQNKTFHVYKLSRNK", "length": 716, "header": "tr|A0A4X1TV79-1|A0A4X1TV79_PIG Isoform 1 of Dpy-19 like C-mannosyltransferase 3 OS=Sus scrofa OX=9823 GN=DPY19L3 PE=3 SV=1 CANONICAL=A0A4X1TV79-1" }, "isoforms": [ { "isoform_ac": "A0A287A2C6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV79/entry#A0A287A2C6-1", "sequence": { "sequence": "MISIRQRKGIKTTEVSEDCAAQEENVKLENKLPSSCTNRRLWKILSFTIGGTVALCIGLLTSVYLATLHENDLWFSNIKVDHCVIYSSASLVVSHVDE", "length": 98, "header": "tr|A0A287A2C6-1|A0A4X1TV79_PIG Computationally mapped isoform of Dpy-19 like C-mannosyltransferase 3 OS=Sus scrofa OX=9823 GN=DPY19L3 PE=3 SV=2 CANONICAL=A0A4X1TV79-1" }, "locus": { "chromosome": "6", "start_pos": 42340956, "end_pos": 42337685, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065936.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065936.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038094.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038094.2" } ] } }, { "isoform_ac": "A0A4X1TV79-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV79/entry#A0A4X1TV79-1", "sequence": { "sequence": "MISIRQRKGIKTTEVSEDCAAQEENVKLENKLPSSCTNRRLWKILSFTIGGTVALCIGLLTSVYLATLHENDLWFSNIKEVEREISFRTECGLYYSYYKQMLQAPTLMQGFHGLIYDNKTESMRTINLLQRMNIYQEVFLGILYRVLPIQKYLEPVYFYIYTLFGLQAIYVTALYITSWLLSGTWLSGLLAAFWYVTNRIDTTRVEFTIPLRENWALPFFAIQIAAITYFLRPNLQPLSQRLTLLAIFTSTFLFSLTWQFNQFMMLMQALVLFTLDSLDMLPAVKVTWLYGIQLTGLLLVCILQFFNSMILGSLLISFNLSVLIARKIQKNLKTGSFLNRLGKLLLHLFVVLCLTLFLNNIIKRILNLKSDEHIFKFLKAKFGFGATRDFDANLYLCEEAFGLLPLNTFERLSDTLLFYAYIFVLSITVTAALAVAFRNLSDSTNQQSMGKIGKSSIGLKPETAYNLIHTILFGFLALSTMRMKYLWTSHMCVFASFGLCSPEIWELLLKLIHLYNPKRICIMRYSIPILILLYLCYKFWPGMMDELSELREFYDPDTVELMNWINSNTPRKAVFAGSMQLLAGVKLCTGRTLTNHPHYEDNSLRERTRAVYQIYAKRPPEEVHALLRSFGTDYVILEDSICYERRHRRGCRLRDLLDVANGHMMDGPGENDPDLKLAGHPRFCEEIKRNLPPYTAYFTRVFQNKTFHVYKLSRNK", "length": 716, "header": "tr|A0A4X1TV79-1|A0A4X1TV79_PIG Isoform 1 of Dpy-19 like C-mannosyltransferase 3 OS=Sus scrofa OX=9823 GN=DPY19L3 PE=3 SV=1 CANONICAL=A0A4X1TV79-1" }, "locus": { "chromosome": "6", "start_pos": 42411261, "end_pos": 42337685, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064091.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064091.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037867.3", "url": "https://www.ensembl.org/id/ENSSSCP00000037867.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2C6", "url": "https://www.uniprot.org/uniprotkb/A0A287A2C6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100621064", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621064", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TV79", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV79" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mannosyltransferase activity", "id": "GO:0000030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000030", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TV79", 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"https://www.ensembl.org/id/ENSSSCP00000076776.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 153, "start_aa": "Thr", "end_pos": 153, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr153", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 288, "start_aa": "Thr", "end_pos": 288, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr288", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6T8", "url": "https://www.uniprot.org/uniprotkb/A0A287A6T8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110261259", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261259", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9S308-1", "protein_name": "Chromosome 18 C16orf46 homolog", "gene_name": "C18H16orf46", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDFGHKNETELENSENYEIESTEETELIYTCPDERSEKNHVCCLLNISDITLEQDKKAKEFVIGTGWEEAVRGWGQISPTACIWPRKKLKKARVGESASSCLLCVNLSHGSLEARPQSEGGKLESGASAPAPAEAGPEKDGGSLSQTPGIPPGSTTTSREVNKICFPTYSQGEKKSLQIKEFIWCLEDWATPETVRGKDPRRPWRGTDRILPASDSLTSKALLVLPPLKSSPPDGLDVLGKKTKNFFLRPEEKGLSVEKDECVAYAYGVKAVDGAGEKQPTELARHHRVKDMQPFLTPVARTPLLPEPEPCCLHWSRLPEKNLLCPPCYLATFQLLQKQGARNYKARLKAREPRPPMKTPKRVLTEAKQENRPQMLETKVFSRPLLPSLTVSRVVIPISTHRLL", "length": 404 }, "evidence": [ { "id": "A0A4X1T0J8", "url": 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"MEAEETMECLQEFPEHHKMILDRLNEQREQDRFTDITLIVDGHHFKAHKAVLAACSKFFYKFFQEFTQEPLVEIEGVSKMAFRHLIEFTYTAKLMIQGEEEANDVWKAAEFLQMLEAIKALEVRNKENSAPLEENTTGKSEAKKRKIAETSNVITESLPSAESEPVEIEVEIAEGTIEVEDEGIETLEEVASAKQSIKYIQSTGSSDDSALALLADITSKYRQGDRKGQIKEDGCASDPTSKQEHMKSHSTESFKCEICNKRYLRESAWKQHLNCYHLEEGGVSKKQRTGKKIHICQYCEKQFDHFGHFKEHLRKHTGEKPFECPNCHERFARNSTLKCHLTACQTGVGAKKGRKKLYECQVCNSVFNSWDQFKDHLVIHTGDKPNHCTLCDLWFMQGNELRRHLSDIHNISERLVTEEFLSVETRVQTEPVTSMTIIEQVGKVHVLPLLQVQVDSAQVTVEQVHPDLLQDSQVQDSHMSELPEQVQVSYLEVGRIQTEEGTEVHVEELHVERVNQMPMEVQTELLEADLDQVTPEIMNQEEREPTQADAAEAAREDHEDAEGLETKSTVDSQAEKAGNENRTPMPVLE", "length": 589, "header": "tr|A0A4X1SU92-1|A0A4X1SU92_PIG Isoform 1 of Zinc finger protein 131 OS=Sus scrofa OX=9823 GN=ZNF131 PE=3 SV=1 CANONICAL=A0A4X1SU92-1" }, "isoforms": [ { "isoform_ac": "A0A287AG94-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU92/entry#A0A287AG94-1", "sequence": { "sequence": "MEAEETMECLQEFPEHHKMILDRLNEQREQDRFTDITLIVDGHHFKAHKAVLAACSHVLPQVFFML", "length": 66, "header": "tr|A0A287AG94-1|A0A4X1SU92_PIG Computationally mapped isoform of Zinc finger protein 131 OS=Sus scrofa OX=9823 GN=ZNF131 PE=3 SV=2 CANONICAL=A0A4X1SU92-1" }, "locus": { "chromosome": "16", "start_pos": 27846113, "end_pos": 27815118, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047154.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047154.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042862.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042862.2" } ] } }, { "isoform_ac": "A0A4X1SU92-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU92/entry#A0A4X1SU92-1", "sequence": { "sequence": "MEAEETMECLQEFPEHHKMILDRLNEQREQDRFTDITLIVDGHHFKAHKAVLAACSKFFYKFFQEFTQEPLVEIEGVSKMAFRHLIEFTYTAKLMIQGEEEANDVWKAAEFLQMLEAIKALEVRNKENSAPLEENTTGKSEAKKRKIAETSNVITESLPSAESEPVEIEVEIAEGTIEVEDEGIETLEEVASAKQSIKYIQSTGSSDDSALALLADITSKYRQGDRKGQIKEDGCASDPTSKQEHMKSHSTESFKCEICNKRYLRESAWKQHLNCYHLEEGGVSKKQRTGKKIHICQYCEKQFDHFGHFKEHLRKHTGEKPFECPNCHERFARNSTLKCHLTACQTGVGAKKGRKKLYECQVCNSVFNSWDQFKDHLVIHTGDKPNHCTLCDLWFMQGNELRRHLSDIHNISERLVTEEFLSVETRVQTEPVTSMTIIEQVGKVHVLPLLQVQVDSAQVTVEQVHPDLLQDSQVQDSHMSELPEQVQVSYLEVGRIQTEEGTEVHVEELHVERVNQMPMEVQTELLEADLDQVTPEIMNQEEREPTQADAAEAAREDHEDAEGLETKSTVDSQAEKAGNENRTPMPVLE", "length": 589, "header": "tr|A0A4X1SU92-1|A0A4X1SU92_PIG Isoform 1 of Zinc finger protein 131 OS=Sus scrofa OX=9823 GN=ZNF131 PE=3 SV=1 CANONICAL=A0A4X1SU92-1" }, "locus": { "chromosome": "16", "start_pos": 27845769, "end_pos": 27815118, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052056.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052056.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056186.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056186.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AG94", "url": "https://www.uniprot.org/uniprotkb/A0A287AG94" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SU92", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU92" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SU92", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU92" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SU92", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU92" } ], "pmid": "" } ] }, { "name": 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"A0A4X1SU92", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU92" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SU92", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU92" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" }, { "start_pos": 410, "end_pos": 412, "annotation": "n_glycosylation_sequon" }, { "start_pos": 581, "end_pos": 583, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1SU92", "database": "UniProtKB", "url": 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"https://www.uniprot.org/uniprotkb/A0A287ALK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALK2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SQ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQ26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SQ26-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQ26-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SQU1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SQU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQU1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTVEEDSDTVTVETVNSVTLTRDTDGNLILHCPQNEADEIDSEDSTEPPHKRLCLSSEDDQSIDDSTPCISVVALPLSENDQSFEVTMTATTEVADDEITEGTVTQIQILQNEQLDEISPLGNEEVSAVSQAWFTTKEDKDSLTNKGHKWKQGMWSKEEIDILMNNIERYLKARGIKDATEIIFEMSKDERKDFYRTIAWGLNRPLFAVYRRVLRMYDDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLMKDTCNTGKWTEEEEKRLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKEDEINLILRIAELDVADENDINWDLLAEGWSSVRSPQWLRSKWWTIKRQIANHKDVSFPVLIKGLKQLHENQKNNPTLLENKPGSGVPNSNSSSSVQHVQIRVARLEDNAAISPSPMTALQIPVQITHVSSADSPAATVDSETITLNSGTLQTFEILPSFHLQPTGTPGTYLLQTSSSQGLPLTLTASPTVTLTAAAPASPEQIIVHALSPEHLLNTSDNVTVQCHTPRVIIQTVATEDITSSISQAELTVDSDIHSSDFPEPPDALEADTFPDEIHQPKITVEPSFNDAHISKFSDQNSTELMNSVMVRTEEEISDSDLKQEDAPSPLARAYVTEDLESPTIEEQVDQTTIDDETILIVPSPHGFIQTSDVIDTESVLPLTTLTDPILQHHREESNIIGSSLGSPVSEDSKDVEDLVNCH", "length": 762, "header": "tr|A0A4X1SQ26-1|A0A4X1SQ26_PIG Isoform 1 of Cyclin-D-binding Myb-like transcription factor 1 OS=Sus scrofa OX=9823 GN=DMTF1 PE=3 SV=1 CANONICAL=A0A4X1SQ26-1" }, "isoforms": [ { "isoform_ac": "A0A287ALK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQ26/entry#A0A287ALK2-1", "sequence": { "sequence": "MSTVEEDSDTVTVETVNSVTLTRDTDGNLILHCPQNVSENDQSFEVTMTATTEVADDEITEGTVTQIQILQNEQLDEISPLGNEEVSAVSQAWFTTKEDKDSLTNKGHKWKQGMWSKEEIDILMNNIERYLKARGIKDATEIIFEMSKDERKDFYRTIAWGLNRPLFAVYRRVLRMYDDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLMKDTCNTGKWTEEEEKRLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKEDEINLILRIAELDVADENDINWDLLAEGWSSVRSPQWLRSKWWTIKRQIANHKDVSFPVLIKGLKQLHENQKNNPTLLENKPGSGVPNSNSSSSVQHVQIRVARLEDNAAISPSPMTALQIPVQITHVSSADSPAATVDSETITLNSGTLQTFEILPSFHLQPTGTPGTYLLQTSSSQGLPLTLTASPTVTLTAAAPASPEQIIVHALSPEHLLNTSDNVTVQCHTPRVIIQTVATEDITSSISQAELTVDSDIHSSDFPEPPDALEADTFPDEIHQPKITVEPSFNDAHISKFSDQNSTELMNSVMVRTEEEISDSDLKQEDAPSPLARAYVTEDLESPTIEEQVDQTTIDDETILIVPSPHGFIQTSDVIDTESVLPLTTLTDPILQHHREESNIIGSSLGSPVSEDSKDVEDLVNCH", "length": 721, "header": "tr|A0A287ALK2-1|A0A4X1SQ26_PIG Computationally mapped isoform of Cyclin-D-binding Myb-like transcription factor 1 OS=Sus scrofa OX=9823 GN=DMTF1 PE=3 SV=1 CANONICAL=A0A4X1SQ26-1" }, "locus": { "chromosome": "9", "start_pos": 93451156, "end_pos": 93417663, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053118.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053118.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044790.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044790.1" } ] } }, { "isoform_ac": "A0A4X1SQ26-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQ26/entry#A0A4X1SQ26-1", "sequence": { "sequence": "MSTVEEDSDTVTVETVNSVTLTRDTDGNLILHCPQNEADEIDSEDSTEPPHKRLCLSSEDDQSIDDSTPCISVVALPLSENDQSFEVTMTATTEVADDEITEGTVTQIQILQNEQLDEISPLGNEEVSAVSQAWFTTKEDKDSLTNKGHKWKQGMWSKEEIDILMNNIERYLKARGIKDATEIIFEMSKDERKDFYRTIAWGLNRPLFAVYRRVLRMYDDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLMKDTCNTGKWTEEEEKRLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKEDEINLILRIAELDVADENDINWDLLAEGWSSVRSPQWLRSKWWTIKRQIANHKDVSFPVLIKGLKQLHENQKNNPTLLENKPGSGVPNSNSSSSVQHVQIRVARLEDNAAISPSPMTALQIPVQITHVSSADSPAATVDSETITLNSGTLQTFEILPSFHLQPTGTPGTYLLQTSSSQGLPLTLTASPTVTLTAAAPASPEQIIVHALSPEHLLNTSDNVTVQCHTPRVIIQTVATEDITSSISQAELTVDSDIHSSDFPEPPDALEADTFPDEIHQPKITVEPSFNDAHISKFSDQNSTELMNSVMVRTEEEISDSDLKQEDAPSPLARAYVTEDLESPTIEEQVDQTTIDDETILIVPSPHGFIQTSDVIDTESVLPLTTLTDPILQHHREESNIIGSSLGSPVSEDSKDVEDLVNCH", "length": 762, "header": "tr|A0A4X1SQ26-1|A0A4X1SQ26_PIG Isoform 1 of Cyclin-D-binding Myb-like transcription factor 1 OS=Sus scrofa OX=9823 GN=DMTF1 PE=3 SV=1 CANONICAL=A0A4X1SQ26-1" }, "locus": { "chromosome": "9", "start_pos": 93451156, "end_pos": 93417663, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051661.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051661.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031950.1", "url": "https://www.ensembl.org/id/ENSSSCP00000031950.1" } ] } }, { "isoform_ac": "A0A4X1SQU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQ26/entry#A0A4X1SQU1-1", "sequence": { "sequence": "MSTVEEDSDTVTVETVNSVTLTRDTDGNLILHCPQNEADEIDSEDSTEPPHKRLCLSSEDDQSIDDSTPCISVVALPLSENDQSFEVTMTATTEVADDEITEGTVTQIQILQNEQLDEISPLGNEEVSAVSQAWFTTKEDKDSLTNKGHKWKQGMWSKEEIDILMNNIERYLKARGIKDATEIIFEMSKDERKDFYRTIAWGLNRPLFAVYRRVLRMYDDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLMKDTCNTGKWTEEEEKRLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKEDEINLILRIAELDVADENDINWDLLAEGWSSVRSPQWLRSKWWTIKRQIANHKDVSFPASADSPAATVDSETITLNSGTLQTFEILPSFHLQPTGTPGTYLLQTSSSQGLPLTLTASPTVTLTAAAPASPEQIIVHALSPEHLLNTSDNVTVQCHTPRVIIQTVATEDITSSISQAELTVDSDIHSSDFPEPPDALEADTFPDEIHQPKITVEPSFNDAHISKFSDQNSTELMNSVMVRTEEEISDSDLKQEDAPSPLARAYVTEDLESPTIEEQVDQTTIDDETILIVPSPHGFIQTSDVIDTESVLPLTTLTDPILQHHREESNIIGSSLGSPVSEDSKDVEDLVNCH", "length": 692, "header": "tr|A0A4X1SQU1-1|A0A4X1SQU1_PIG Computationally mapped isoform of Cyclin-D-binding Myb-like transcription factor 1 OS=Sus scrofa OX=9823 GN=DMTF1 PE=3 SV=1 CANONICAL=A0A4X1SQ26-1" }, "locus": { "chromosome": "9", "start_pos": 93451156, "end_pos": 93417663, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063267.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063267.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055805.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055805.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 508, "start_aa": "Thr", "end_pos": 508, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr508", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ALK2", "url": "https://www.uniprot.org/uniprotkb/A0A287ALK2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521327", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521327", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5NYR7-1", "protein_name": "Cyclin-D-binding Myb-like transcription factor 1", "gene_name": "DMTF1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSTVEEESDTVTVETVNSVTLTQDTEGNLILHCPQNETDEVNSEDSTEPPHKRLCLSEDDQSLDDSAPCISVVAVPISENDQSFEVTMTATAEVAEDEINEGTVTQIQILQNEQLDEISPMGNEEVSAVSQAWFTTKEDKDSLTNKGHKWKQGMWSKEEIDILMSNIERYLKARGIKDATEIIFEMSKDERKDFYRTIAWGLNRPLFAVYRRVLRMYDDRNHVGKYTPEEIERLKELRIKHGNDWATIGAALGRSASSVKDRCRLMKDTCNTGKWTEEEEKRLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKEDEINLILRIAELEVSDENDINWDLLAEGWSSVRSPQWLRSKWWTIKRQIANHKDVSFPVLIKGLKQLHENQKNNPGHQLSENKSGGGLPNSNSSSGVQHVQIRVARLEENAGNTPGPVTALQIPVQITHVSSTDSPAATVDSETITLNSGTLQTFEILPSFHLQPTGTPGTYLLQTSSSQGLPLTLTTSPTMTLTAAAAPASPEQIIVHALSPEHLLNTSDNVTVQCHTPSVIIRTVAAEDISSSVTQAELTVDSDIQAADLTDPPDALETNSFPDDIHQSKLSDEEHSAYNEDDASKFSSRNSSELMDGVMVRTEEEISDASLKQEEDSHSDLPSTYVTEDLGSPTIEEQVDQPTIDDETVLIVPSSHGFIQTSDDIDSESVLPLTTLTDPILQHHGDGSHIIGSSLGSPDSEDSKDVEDLVSCH", "length": 767 }, "evidence": [ { "id": "A0A4X1SQ26", "url": "https://omabrowser.org/oma/group/A0A4X1SQ26/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BQ00-1", "protein_name": "Cyclin-D-binding Myb-like transcription factor 1", "gene_name": "DMTF1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSTVEEDSDTVTVETVDSVTLTRDTDGNLILHCPHNEADEIDSEDSTEPPHKRLCLSSEDDQSIDDSTPCISVVALPLSENDQSFEVTMTATTEVADDEITEGTVTQIQILQNEQLDEISPLGNEEVSAVSQAWFTTKEDKDSLTNKGHKWKQGMWSKEEIDILMNNIERYLKARGIKDATEIIFEMSKDERKDFYRTIAWGLNRPLFAVYRRVLRMYDDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLMKDTCNTGKWTEEEEKRLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKEDEINLILRIAELDVADENDINWDLLAEGWSSVRSPQWLRSKWWTIKRQIANHKDVSFPVLIKGLKQLHENQKNNPTLLENKSGPGVPNSNSNSSVQHVQIRVARLEDNGAISPSPMTALQIPVQITHVSSADSAAATVDSETITLNSGTLQTFEILPSFHLQPTGTPGTYLLQTSSSQGLPLTLTASPTVTLAAAAPASPEQIIVHALSPEHLLNTSDVTVQCHAPRVIIQTVATEDIASSISQAELTVDSDIHSSDFPEPPDALEADTFPDEIHQPKITVEPSFNDAHISKFSDQNSTELMNSIMVRTEEEISVTHLKQEDEPSPLARAYVTEDLGSPTIEEQVHQTTIDDETILIVPSPHGFIQTSDVIDTESVLPLTTLTDPILQHHREESNIIGSSLGSPVSEDSKDVEDLVHCH", "length": 761 }, "evidence": [ { "id": "A0A4X1SQ26", "url": "https://omabrowser.org/oma/group/A0A4X1SQ26/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3I5J6-1", "protein_name": "Cyclin-D-binding Myb-like transcription factor 1", "gene_name": "Dmtf1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSTVEEDSDTVTVETVNSVTFTQDTDGNLILHCPQNDPDEIDSEDSAEPPHKRLCLSSEDDQSIDDSTPCISVVALPLSENDQSFEVTMTATTEVADDELSEGTVTQIQILQNDQLDEISPLGTEEVSAVSQAWFTTKEDKDSLTNKGHKWKQGMWSKEEIDILMNNIERYLKARGIKDATEIIFEMSKDERKDFYRTIAWGLNRPLFAVYRRVLRMYDDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLMKDTCNTGKWTEEEEKRLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKEDEINLILRIAELDVADENDINWDLLAEGWSSVRSPQWLRSKWWTIKRQIANHKDVSFPVLIKGLKQLHENQKNNPVLLENKSGSGVPNSNCNSSVQHVQIRVARLEDNTAISPSPMAALQIPVQITHVSSTDSPAASVDSETITLNSGTLQTFEILPSFHLQPTGTPGTYLLQTSSSQGLPLTLTTSPTVTLAAAAPASPEQIIVHALSPEHLLNTSDNVTVQCHTPRVIIQTVATEDIASSVSQAELTVGSDLHSSDFPEPPDALEADTFPDEIPQPKMTIQPSFNTHVSKFSDQNSTELMNSVMVRTEEEIADTDLKQEEPPADLASAYVTEDLESPTIVHQVHQTIDDETILIVPSPHGFIQASDVIDTESVLPLTTLTDPIFQHHQEESNIIGSSLGSPVSEDSKDVEDLVNCH", "length": 760 }, "evidence": [ { "id": "A0A4X1SQ26", "url": "https://omabrowser.org/oma/group/A0A4X1SQ26/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q66HG1-1", "protein_name": "Cyclin-D-binding Myb-like transcription factor 1", "gene_name": "Dmtf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSTVEEDSDTVTVETVNSVTFTQDTDGNLILHCPQNDPDEIDSEDSTEPPHKRLCLSSEDDQSIDDSTPCISVVALPLSENDQSFEVTMTATTEVADDELSEGTVTQIQILQNDQLDEMSPLGTEEVSAVSQAWFTTKEDKDSLTNKGHKWKQGMWSKEEIDILMNNIERYLKARGIKDATEIIFEMSKDERKDFYRTIAWGLNRPLFAVYRRVLRMYDDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLMKDTCNTGKWTEEEEKRLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKEDEINLILRIAELDVADENDINWDLLAEGWSSVRSPQWLRSKWWTIKRQIANHKDVSFPVLIKGLKQLHENQKNNPVLLENKSGSGVPNSNCNSSVQHVQIRVARLEDNTAISPSPMAALQIPVQITHVSSTDSPAASVDSETITLNSGTLQTFEILPSFHLQPTGTPGTYLLQTSSSQGLPLTLTTSPTVTLAAAAPASPEQIIVHALSPEHLLNTSDNVTVQCHTPRVIIQTVATEDITSSISQAELTADSDLHSSDFPEPPDALEADTFPDEIPRPKMTIQPSFNNAHVSKYSDQNSTELMNSVMVRTEEEIADTDLKQEPPSDLASAYVTEDLESPTIVHQVHQTIDDETILIVPSPHGFIQASDGIDAESVLPLTTLTDPIFQHHQEESNIIGSSLGSPVSEDSKDVEDLVNCH", "length": 760 }, "evidence": [ { "id": "A0A4X1SQ26", "url": "https://omabrowser.org/oma/group/A0A4X1SQ26/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6DG03-1", "protein_name": "Cyclin-D-binding Myb-like transcription factor 1", "gene_name": "dmtf1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNTGDVPATVTLESVNSVTFTQDTDGNIILHCPQNDGEDLGSDETTEPVHKRIRLSSEDGEDPQDSASTEYSVVTLPITDGDESFEVTMTATEMRDEELESDDLSETTGKDSSAQKKGEDVSAVSQAWFTTKEDKDTLVNKGHKWKQGMWSKEEIDLLMTNIELYLKNRGIQDPAEIIFEMSKEERKDFYRSIACGLNRPLFAVYRRVLRMYDNRNHVGKYTDEEINKLKELRQKHGNDWATIGSALGRSASSVKDRCRLMKDTCNTGKWTEEEERRLAEVVHELTGTEAGDVVTQGVSWASVAELVGTRSEKQCRSKWLNYLNWKQSGGTEWTKEDDINLVRRIAELEVEDENEINWDILASGWSSVRSPQWLRSKWWTIKRQVANHKELPFPVLLKGLQDVVEAPPSTMNKVVVVGSRSANASPSPVTALQIPVQIPVQITHVSSSDGSSGTSDSETITLNSGALQTFELLPSFHLQPTGTPGTYFLQTGTNQSLPLTLSANPTVTLTAAASPSSPDQIILHSLTTDTENVTVQMSHPGIIIQTVTSEDLADPLGQSELEGEQVLVKEEPSENQTNPAIEEPSEEQSKQGEKTLDSSKVVETVLMVPSPGSFIPTNEDISSDSVLPLGTLTDPILENQEEGSN", "length": 645 }, "evidence": [ { "id": "A0A4X1SQ26", "url": "https://omabrowser.org/oma/group/A0A4X1SQ26/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8CE22-1", "protein_name": "Cyclin-D-binding Myb-like transcription factor 1", "gene_name": "Dmtf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTVEEDSDTVTVETVNSVTFTQDTDGNLILHCPQNDPDEVDSEDSTEPPHKRLCLSSEDDQSIDDATPCISVVALPLSENDQSFEVTMTATTEVADDELSEGTVTQIQILQNDQLDEISPLGTEEVSAVSQAWFTTKEDKDSLTNKGHKWKQGMWSKEEIDILMNNIERYLKARGIKDATEIIFEMSKDERKDFYRTIAWGLNRPLFAVYRRVLRMYDDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLMKDTCNTGKWTEEEEKRLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKEDEINLILRIAELDVADENDINWDLLAEGWSSVRSPQWLRSKWWTIKRQIANHKDVSFPVLIKGLKQLHENQKNNPVLLENKSGSGVPNSNCNSSVQHVQIRVARLEDNTAISPSPMAALQIPVQITHVSSTDSPAASVDSETITLNSGTLQTFEILPSFHLQPTGTPGTYLLQTSSSQGLPLTLTTNPTVTLAAAAPASPEQIIVHALSPEHLLNTSDNVTVQCHTPRVIIQTVATEDITSSLSQEELTVDSDLHSSDFPEPPDALEADTFPDEIPRPKMTIQPSFNNAHVSKFSDQNSTELMNSVMVRTEEEIADTDLKQEEPPSDLASAYVTEDLESPTIVHQVHQTIDDETILIVPSPHGFIQASDVIDTESVLPLTTLTDPIFQHHQEASNIIGSSLGSPVSEDSKDVEDLVNCH", "length": 761 }, "evidence": [ { "id": "A0A4X1SQ26", "url": "https://omabrowser.org/oma/group/A0A4X1SQ26/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y222-1", "protein_name": "Cyclin-D-binding Myb-like transcription factor 1", "gene_name": "DMTF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSTVEEDSDTVTVETVNSVTLTQDTEGNLILHCPQNEADEIDSEDSIEPPHKRLCLSSEDDQSIDDSTPCISVVALPLSENDQSFEVTMTATTEVADDEVTEGTVTQIQILQNEQLDEISPLGNEEVSAVSQAWFTTKEDKDSLTNKGHKWKQGMWSKEEIDILMNNIERYLKARGIKDATEIIFEMSKDERKDFYRTIAWGLNRPLFAVYRRVLRMYDDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLMKDTCNTGKWTEEEEKRLAEVVHELTSTEPGDIVTQGVSWAAVAERVGTRSEKQCRSKWLNYLNWKQSGGTEWTKEDEINLILRIAELDVADENDINWDLLAEGWSSVRSPQWLRSKWWTIKRQIANHKDVSFPVLIKGLKQLHENQKNNPTLLENKSGSGVPNSNTNSSVQHVQIRVARLEDNTAISSSPMAALQIPVQITHVSSADSPATVDSETITLNSGTLQTFEILPSFHLQPTGTPGTYLLQTSSSQGLPLTLTASPTVTLTAAAPASPEQIIVHALSPEHLLNTSDNVTVQCHTPRVIIQTVATEDITSSISQAELTVDSDIQSSDFPEPPDALEADTFPDEIHHPKMTVEPSFNDAHVSKFSDQNSTELMNSVMVRTEEEISDTDLKQEESPSDLASAYVTEGLESPTIEEQVDQTIDDETILIVPSPHGFIQASDVIDTESVLPLTTLTDPILQHHQEESNIIGSSLGSPVSEDSKDVEDLVNCH", "length": 760 }, "evidence": [ { "id": "A0A4X1SQ26", "url": "https://omabrowser.org/oma/group/A0A4X1SQ26/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SQ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQ26" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SQ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQ26" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SQ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQ26" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SQ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQ26" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SQ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQ26" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SQ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQ26" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SQ26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQ26" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 432, "end_pos": 434, "annotation": "n_glycosylation_sequon" }, { "start_pos": 557, "end_pos": 559, "annotation": "n_glycosylation_sequon" }, { "start_pos": 561, "end_pos": 563, "annotation": "n_glycosylation_sequon" }, { "start_pos": 640, "end_pos": 642, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1SQ26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQ26" }, { "id": "PS51294", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51294" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HTH myb-type", "eco_id": "ECO_0000259", "start_pos": 268, "end_pos": 333, "start_aa": "Lys", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1SQ26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SQ26" }, { "id": "PS50090", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50090" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myb-like", "eco_id": "ECO_0000259", "start_pos": 268, "end_pos": 329, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 508 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 432, "end_pos": 434 }, { "start_pos": 557, "end_pos": 559 }, { "start_pos": 561, "end_pos": 563 }, { "start_pos": 640, "end_pos": 642 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1ST16-1", "uniprot_ac": "A0A4X1ST16", "uniprot_id": "A0A4X1ST16_PIG", "mass": { "chemical_mass": 60095.0, "monoisotopic_mass": 60095.0 }, "refseq": {}, "gene_names": [ { "name": "RBM46", "type": "recommended", "evidence": [ { "id": "A0A4X1ST16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST16" } ] } ], "protein_names": [ { "name": "Probable RNA-binding protein 46", "type": "recommended", "evidence": [ { "id": "A0A4X1ST16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST16/entry#names_and_taxonomy" } ] }, { "name": "RNA-binding motif protein 46", "type": "synonym", "evidence": [ { "id": "A0A4X1ST16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST16/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Essential for male and female fertility, playing a crucial role in regulating germ cell development by ensuring the proper progression of meiosis prophase I. Regulates mitotic-to-meiotic transition in spermatogenesis by forming a complex with MEIOC and YTHDC2 which recognizes and down-regulates mitotic transcripts for a successful meiotic entry. Required for normal synaptonemal complex formation during meiosis, binding meiotic cohesin subunit mRNAs containing GCCUAU/GUUCGA motifs in their 3'UTRs regions and positively regulating their translation. Required for spermatogonial differentiation in both developing and adult testis.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN41", "url": "https://www.uniprot.org/uniprotkb/A0A287AN41#function" }, { "database": "UniProtKB", "id": "ARBA00059579", "url": "https://www.uniprot.org/uniprotkb/ARBA00059579#function" }, { "database": "UniProtKB", "id": "A0A4X1SUE3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SUE3#function" }, { "database": "UniProtKB", "id": "A0A4X1ST16", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST16#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ST16", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST16" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RBM46", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST16", "locus": { "chromosome": "8", "start_pos": 74337319, "end_pos": 74382515, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008994", "url": "https://www.ensembl.org/id/ENSSSCG00000008994" } ] } } ], "crossref": [ { "id": "A0A4X1ST16", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1ST16", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008994", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008994", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12484", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12484", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12492", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12492", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12496", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12496", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19901", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19901", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513804", "url": "https://www.ncbi.nlm.nih.gov/gene/100513804", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006535", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006535", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034434", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034434", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034435", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034435", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044462", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044462", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047837", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047837", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513804", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513804", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AN41", "url": "https://www.orthodb.org/?gene=A0A287AN41", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21245", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21245", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14709", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14709", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AN41", "url": "https://www.uniprot.org/uniprotkb/A0A287AN41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AN41-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AN41-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1ST16", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1ST16-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SUE3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SUE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SUE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SUE3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNEENIDGTNGCSKVRTGTQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKPPTLQARLNGQHSPSPPEIERCTYPFFPGTKLTPISMYSLKSNHFNSAVMHLDYYCNKNNWAPPEYYLYSATSQDGKVLLVYKIVIPAIANGSQSYFMPDKLCTTLEDAKELAAQFTLLHLDYNFRRSSINSLSPVSATLSSGTPSVLPYTSRLYSYPSYSLSPTVSLANGSHVGQRLYISNQASFF", "length": 533, "header": "tr|A0A4X1ST16-1|A0A4X1ST16_PIG Isoform 1 of Probable RNA-binding protein 46 OS=Sus scrofa OX=9823 GN=RBM46 PE=4 SV=1 CANONICAL=A0A4X1ST16-1" }, "isoforms": [ { "isoform_ac": "A0A287AN41-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST16/entry#A0A287AN41-1", "sequence": { "sequence": "MNEENIDGTNGCSKVRTGTQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKPPTLQARLNGQHSPSPPEIERCTYPFFPGTKLTPISMYSLKSNHFNSAVMHLDYYCNKNNWAPPEYYLYSATSQDGKVLLVYKIVIPAIANGSQSYFMPDKLCTTLEDAKELAAQFTLLHLDREHNLFSLDLYRRIWRK", "length": 485, "header": "tr|A0A287AN41-1|A0A4X1ST16_PIG Computationally mapped isoform of Probable RNA-binding protein 46 OS=Sus scrofa OX=9823 GN=RBM46 PE=4 SV=2 CANONICAL=A0A4X1ST16-1" }, "locus": { "chromosome": "8", "start_pos": 74370278, "end_pos": 74345901, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054765.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054765.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045316.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045316.2" } ] } }, { "isoform_ac": "A0A4X1ST16-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST16/entry#A0A4X1ST16-1", "sequence": { "sequence": "MNEENIDGTNGCSKVRTGTQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKPPTLQARLNGQHSPSPPEIERCTYPFFPGTKLTPISMYSLKSNHFNSAVMHLDYYCNKNNWAPPEYYLYSATSQDGKVLLVYKIVIPAIANGSQSYFMPDKLCTTLEDAKELAAQFTLLHLDYNFRRSSINSLSPVSATLSSGTPSVLPYTSRLYSYPSYSLSPTVSLANGSHVGQRLYISNQASFF", "length": 533, "header": "tr|A0A4X1ST16-1|A0A4X1ST16_PIG Isoform 1 of Probable RNA-binding protein 46 OS=Sus scrofa OX=9823 GN=RBM46 PE=4 SV=1 CANONICAL=A0A4X1ST16-1" }, "locus": { "chromosome": "8", "start_pos": 74370278, "end_pos": 74338081, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040938.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040938.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057258.3", "url": "https://www.ensembl.org/id/ENSSSCP00000057258.3" } ] } }, { "isoform_ac": "A0A4X1SUE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST16/entry#A0A4X1SUE3-1", "sequence": { "sequence": "MNEENIDGTNGCSKVRTGTQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKPPTLQARLNGQHSPSPPEIERCTYPFFPGTKLTPISMYSLKSNHFNSAVMHLDYYCNKNNWAPPEYYLYSATSQDGKVLLVYKIVIPAIANGSQSYFMPDKLCTTLEDAKELAAQFTLLHLGPF", "length": 470, "header": "tr|A0A4X1SUE3-1|A0A4X1SUE3_PIG Computationally mapped isoform of Probable RNA-binding protein 46 OS=Sus scrofa OX=9823 GN=RBM46 PE=4 SV=1 CANONICAL=A0A4X1ST16-1" }, "locus": { "chromosome": "8", "start_pos": 74370278, "end_pos": 74339338, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070782.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070782.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061027.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061027.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AN41", "url": "https://www.uniprot.org/uniprotkb/A0A287AN41" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513804", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513804", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ST16", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ST16" } ], "pmid": "" }, { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { 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"MLTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSHPLQYIGHDRTMQDIVYKLVPGLQEAEMRKQREFYHKLGLEVPGDVKGETCSAKQHLDSHRNGETKAEDSSNKEAAEEKQEEDGDYHRSDEQVSICLECNSSKLRGLKRKWIRCSAQATVLHLKKFIAKKLNLSSFNELDILCNEEILGKDHTLKFVVVTRWRFKKAPLLLHYRPKMDLL", "length": 242, "header": "tr|A0A4X1T6D0-1|A0A4X1T6D0_PIG Isoform 1 of Polycomb group RING finger protein 3 OS=Sus scrofa OX=9823 GN=PCGF3 PE=4 SV=1 CANONICAL=A0A4X1T6D0-1" }, "locus": { "chromosome": "8", "start_pos": 181550, "end_pos": 155753, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030851.3", "url": "https://www.ensembl.org/id/ENSSSCT00000030851.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021018.2", "url": "https://www.ensembl.org/id/ENSSSCP00000021018.2" } ] } }, { "isoform_ac": "A0A5G2QY80-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6D0/entry#A0A5G2QY80-1", "sequence": { "sequence": "MLTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSHPLQYIGHDRTMQDIVYKLVPGLQEAEMRKQREFYHKLGLEVPGDVKGETCSAKQHLDSHRNGETKAEDSSNKEAAEEKQEEDGDYHRSDEQVSICLECNSSKLRGLKRKWIRCSAQATVLHLKKFIAKKLNLSLWVFWFVCFSQFCLEIFNPKKIQFVLPPPEECGSIYPRACGAQSPRARKASAKRRGAAEGRR", "length": 258, "header": "tr|A0A5G2QY80-1|A0A4X1T6D0_PIG Computationally mapped isoform of Polycomb group RING finger protein 3 OS=Sus scrofa OX=9823 GN=PCGF3 PE=4 SV=1 CANONICAL=A0A4X1T6D0-1" }, "locus": { "chromosome": "8", "start_pos": 171950, "end_pos": 155753, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082128.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082128.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063169.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063169.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QY80", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY80" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513214", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513214", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YG32-1", "protein_name": "Polycomb group RING finger protein 3", "gene_name": "PCGF3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MNPHGRIYTSGHLWPWKSLQYSRYTSQHPCLWIRPCQNTLKPTGDGKRGRYPTPPRLPSPPLALPLPTKDGQGRAGRRRLAERRTPPAAGDRAPPRTRTRRRPPPRQTPKMLTRKIKLWDINAHITCRLCNGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSHPLQYIGHDRTMQDIVYKLVPGLQEAEMKKQREFYHKLGMEVPGDIKGETCSAKQHLDSHRNGETKTDENSNKETSEEKQEEDNDYHRSDEQVSICLECNSSKLRGLKRKWIRCSAQATVLHLKKFIAKKLNLSSFNELDILCNEEILGKDHTLKFVVVTRWRFKKAPLLLHYRPKMDLL", "length": 352 }, "evidence": [ { "id": "A0A4X1T6D0", "url": "https://omabrowser.org/oma/group/A0A4X1T6D0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F7EV63-1", "protein_name": "Polycomb group RING finger protein 3", "gene_name": "Pcgf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSHPLQYIGHDRTMQDIVYKLVPGLQEGELMLFSSSSELGFGSWTQTLSSQHPYFPHAIVLDSPLDAQKKVRHTQKHGHSLLRRKSQIFICLECNSSKLRGLKRKWIRCSAQATVLHLKKFIAKKLNLSSFNELDILCNEEILGKDHTLKFVVVTRWRFKKAPLLLHYRPKMDLL", "length": 235 }, "evidence": [ { "id": "A0A4X1T6D0", "url": "https://omabrowser.org/oma/group/A0A4X1T6D0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HEE1-1", "protein_name": "Polycomb group RING finger protein 3", "gene_name": "Pcgf3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSHPLQYIGHDRTMQDIVYKLVPGLQEAEMRKQREFYHKLGMEVPGDIKGEACSAKQHLDPRNGETKADDSSNKETAEEKQEEDNDYHRSDEQVSICLECNSSKLRGLKRKWIRCSAQATVLHLKKFIAKKLNLSSFNELDILCNEEILGKDHTLKFVVVTRWRFKKAPLLLHYRPKMDLL", "length": 241 }, "evidence": [ { "id": "A0A4X1T6D0", "url": "https://omabrowser.org/oma/group/A0A4X1T6D0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q2KJ29-1", "protein_name": "Polycomb group RING finger protein 3", "gene_name": "PCGF3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSHPLQYIGHDRTMQDIVYKLVPGLQEAEMRKQREFYHKLGLEVPGDIKGETCSAKQHLDPHRNGETKADDSSNKEAAEEKQEEDGDYHRSDEQVSICLECNSSKLRGLKRKWIRCSAQATVLHLKKFIAKKLNLSSFNELDILCNEEILGKDHTLKFVVVTRWRFKKAPLLLHYRPKMDLL", "length": 242 }, "evidence": [ { "id": "A0A4X1T6D0", "url": "https://omabrowser.org/oma/group/A0A4X1T6D0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3KNV8-1", "protein_name": "Polycomb group RING finger protein 3", "gene_name": "PCGF3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSHPLQYIGHDRTMQDIVYKLVPGLQEAEMRKQREFYHKLGMEVPGDIKGETCSAKQHLDSHRNGETKADDSSNKEAAEEKPEEDNDYHRSDEQVSICLECNSSKLRGLKRKWIRCSAQATVLHLKKFIAKKLNLSSFNELDILCNEEILGKDHTLKFVVVTRWRFKKAPLLLHYRPKMDLL", "length": 242 }, "evidence": [ { "id": "A0A4X1T6D0", "url": "https://omabrowser.org/oma/group/A0A4X1T6D0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BTQ0-1", "protein_name": "Polycomb group RING finger protein 3", "gene_name": "PcgF3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLTRKIKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLEENNTCPTCRIVIHQSHPLQYIGHDRTMQDIVYKLVPGLQEAEMRKQREFYHKLGMEVPGDIKGEACSAKQHLDPRNGETKADDNSNKETAEEKQEEDNDYHRSDEQVSICLECNSSKLRGLKRKWIRCSAQATVLHLKKFIAKKLNLSSFNELDILCNEEILGKDHTLKFVVVTRWRFKKAPLLLHYRPKMDLL", "length": 241 }, "evidence": [ { "id": "A0A4X1T6D0", "url": "https://omabrowser.org/oma/group/A0A4X1T6D0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VV77-1", "protein_name": "Polycomb group RING finger protein 3", "gene_name": "l(3)73Ah", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MERRVKLKTINPHITCKICGGYFIDATTVTECLHTFCKSCLVKHLEEKKTCPTCDNIIHQSHPLQYISFDRTMQDIVYKLVPKLQEDESRRERDFYKSRNMPCPKDITQNHEDDNEKVMDAHAESDFHRLDEQVNVCLECISNNFKNLQRRFIRCSSQATITHLKKLVAKKILNGIEKYREIDILCNEELLGKDHTLKFVYVTRWRFRDPPLRLQFRPRVEL", "length": 222 }, "evidence": [ { "id": "A0A4X1T6D0", "url": "https://omabrowser.org/oma/group/A0A4X1T6D0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "random inactivation of X chromosome", "id": "GO:0060816", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060816", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T6D0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6D0" 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"A0A4X1T6D0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6D0" } ], "pmid": "" }, { "name": "X chromosome", "id": "GO:0000805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000805", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T6D0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6D0" } ], "pmid": "" }, { "name": "PRC1 complex", "id": "GO:0035102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035102", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T6D0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6D0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T6D0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6D0" } ], "pmid": "" }, { "name": "histone H2AK119 ubiquitin ligase activity", "id": "GO:0140862", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140862", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T6D0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6D0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" }, { "start_pos": 194, "end_pos": 196, "annotation": "n_glycosylation_sequon" }, { "start_pos": 49, "end_pos": 51, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1T6D0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6D0" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 17, "end_pos": 56, "start_aa": "Cys", "end_aa": "Arg", 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"Protein" ] }, { "id": "A0A4X1U6G7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6G7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4N3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4N3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4N3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4N3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHG0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHG0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQCCSN", "length": 216, "header": "tr|A0A4X1U6G7-1|A0A4X1U6G7_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAB5C PE=1 SV=1 CANONICAL=A0A4X1U6G7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1U6G7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6G7/entry#A0A4X1U6G7-1", "sequence": { "sequence": "MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQCCSN", "length": 216, "header": "tr|A0A4X1U6G7-1|A0A4X1U6G7_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAB5C PE=1 SV=1 CANONICAL=A0A4X1U6G7-1" }, "locus": { "chromosome": "12", "start_pos": 20635145, "end_pos": 20630912, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046903.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046903.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057921.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057921.1" } ] } }, { "isoform_ac": "A0A5G2R4N3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6G7/entry#A0A5G2R4N3-1", "sequence": { "sequence": "MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQPRSFPRTSPRMQLVLRAGTEVWTSRRTTPPAGASAAATEPPLPAHCPHLLRLNDPTGIHSNQSHLTTRATTRGGRGRGPP", "length": 227, "header": "tr|A0A5G2R4N3-1|A0A4X1U6G7_PIG Computationally mapped isoform of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAB5C PE=1 SV=1 CANONICAL=A0A4X1U6G7-1" }, "locus": { "chromosome": "12", "start_pos": 20635272, "end_pos": 20630912, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077590.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077590.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072041.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072041.1" } ] } }, { "isoform_ac": "A0A8W4FHG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6G7/entry#A0A8W4FHG0-1", "sequence": { "sequence": "MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQCCSN", "length": 175, "header": "tr|A0A8W4FHG0-1|A0A4X1U6G7_PIG Computationally mapped isoform of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAB5C PE=1 SV=1 CANONICAL=A0A4X1U6G7-1" }, "locus": { "chromosome": "12", "start_pos": 20635145, "end_pos": 20630912, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101335.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101335.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077747.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077747.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FHG0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHG0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523862", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523862", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B0BNK1-1", "protein_name": "small monomeric GTPase", "gene_name": "Rab5c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQESNPASRSQCCSN", "length": 216 }, "evidence": [ { "id": "A0A4X1U6G7", "url": "https://omabrowser.org/oma/group/A0A4X1U6G7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HLW5-1", "protein_name": "small monomeric GTPase", "gene_name": "Rab5c", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNVTGAPGRNRGVDLQESNPASRSQCCSN", "length": 216 }, "evidence": [ { "id": "A0A4X1U6G7", "url": "https://omabrowser.org/oma/group/A0A4X1U6G7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P31582-1", "protein_name": "Ras-related protein RABF2a", "gene_name": "RABF2A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAENPTGMVLPNGPGATAVSSSCCA", "length": 200 }, "evidence": [ { "id": "A0A4X1U6G7", "url": "https://omabrowser.org/oma/group/A0A4X1U6G7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P35278-1", "protein_name": "Ras-related protein Rab-5C", "gene_name": "Rab5c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRTRGVDLQESNPASRSQCCSN", "length": 216 }, "evidence": [ { "id": "A0A4X1U6G7", "url": "https://omabrowser.org/oma/group/A0A4X1U6G7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P36017-1", "protein_name": "Vacuolar protein sorting-associated protein 21", "gene_name": "VPS21", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MNTSVTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLKTAEEQNSASNERESNNQRVDLNAANDGTSANSACSC", "length": 210 }, "evidence": [ { "id": "A0A4X1U6G7", "url": "https://omabrowser.org/oma/group/A0A4X1U6G7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q58DS9-1", "protein_name": "Ras-related protein Rab-5C", "gene_name": "RAB5C", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQCCSN", "length": 216 }, "evidence": [ { "id": "A0A4X1U6G7", "url": "https://omabrowser.org/oma/group/A0A4X1U6G7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q98932-1", "protein_name": "Ras-related protein Rab-5C", "gene_name": "RAB5C", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAPGGPGRNRVVDLQESSQPSRSQCCSN", "length": 216 }, "evidence": [ { "id": "A0A4X1U6G7", "url": "https://omabrowser.org/oma/group/A0A4X1U6G7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6G7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6G7" } ], "pmid": "" }, { "name": "GDP binding", "id": "GO:0019003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019003", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6G7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6G7" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6G7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6G7" } ], "pmid": "" }, { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6G7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6G7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6G7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6G7" } ], "pmid": "" }, { "name": "lipid droplet", "id": "GO:0005811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005811", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6G7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6G7" } ], "pmid": "" }, { "name": "endocytic vesicle", "id": "GO:0030139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030139", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6G7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6G7" } ], 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"id": "ENSSSCP00000045639.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045639.1" } ] } }, { "isoform_ac": "A0A4X1TYD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U3R4/entry#A0A4X1TYD9-1", "sequence": { "sequence": "TRSATETLFRMGVARGTITTLRNGEVLLFCITAAMYMFFFRCKDGLKGFTFSALRFIVGKEEIPTHSYSPEAAYARVEQKTEKHEEKLRRMNIIALVRKLVDSICKHGPRHRCCKHYEDNCISYCIKGFIRMFSVGYLIQCCLRIPSAFRHLFTQPSRLLSLFYNKENFQLGAFLGSFVSIYKGTSCFLRWVRNLDDELHAVIAGFLAGISMMFYKSTTISMYLASKLVETMYFKGIEAGKVPYFPHADTIIYSISTAICFQAAVMEVQNLRPSYWKFLLRLTKGKFNVMNRKVLDVFGTGASKHFQDFIPRLDPRYTTVTPELPIEFS", "length": 329, "header": "tr|A0A4X1TYD9-1|A0A4X1TYD9_PIG Computationally mapped isoform of Transmembrane protein 135 OS=Sus scrofa OX=9823 GN=TMEM135 PE=4 SV=1 CANONICAL=A0A4X1U3R4-1" }, "locus": { "chromosome": "9", "start_pos": 21019238, "end_pos": 20791080, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101225.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101225.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080517.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080517.1" } ] } }, { "isoform_ac": "A0A4X1U3R4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U3R4/entry#A0A4X1U3R4-1", "sequence": { "sequence": "MAALSKSIPHNCYEIGHTWHPSCRVAFVQITRGALEESLRIYAPLYLIAAILRKRKLDYYLHKLLPEILQSASFLTANGALYMAFFCILRKILGKFYSWSPGFGAALPASYVAILIERKSRRGLLTIYMANLVLLFCITAAMYMFFFRCKDGLKGFTFSALRFIVGKEEIPTHSYSPEAAYARVEQKTEKHEEKLRRMNIIALVRKLVDSICKHGPRHRCCKHYEDNCISYCIKGFIRMFSVGYLIQCCLRIPSAFRHLFTQPSRLLSLFYNKENFQLGAFLGSFVSIYKGTSCFLRWVRNLDDELHAVIAGFLAGISMMFYKSTTISMYLASKLVETMYFKGIEAGKVPYFPHADTIIYSISTAICFQAAVMEVQNLRPSYWKFLLRLTKGKFNVMNRKVLDVFGTGASKHFQDFIPRLDPRYTTVTPELPIEFS", "length": 436, "header": "tr|A0A4X1U3R4-1|A0A4X1U3R4_PIG Isoform 1 of Transmembrane protein 135 OS=Sus scrofa OX=9823 GN=TMEM135 PE=3 SV=1 CANONICAL=A0A4X1U3R4-1" }, "locus": { "chromosome": "9", "start_pos": 21019238, "end_pos": 20791043, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098311.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098311.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076357.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076357.1" } ] } }, { "isoform_ac": "A0A4X1U3V8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U3R4/entry#A0A4X1U3V8-1", "sequence": { "sequence": "MAALSKSIPHNCYEIGHTWHPSCRVAFVQITRGALEESLRIYAPLYLIAAILRKRKLDYYLHKLLPEILQSASFLTANGALYMAFFCILRKILGKFYSWSPGFGAALPASYVAILIERKSRRGLLTIYMANLATETLFRMGVARGTITTLRNGEVLLFCITAAMYMFFFRCKDGLKGFTFSALRFIVGKEEIPTHSYSPEAAYARVEQKTEKHEEKLRRMNIIALVRKLVDSICKHGPRHRCCKHYEDNCISYCIKGFIRMFSVGYLIQCCLRIPSAFRHLFTQPSRLLSLFYNKENFQLGAFLGSFVSIYKGTSCFLRWVRNLDDELHAVIAGFLAGISMMFYKSTTISMYLASKLVETMYFKGIEAGKVPYFPHADTIIYSISTAICFQAAVMEVQNLRPSYWKFLLRLTKGKFNVMNRKVLDVFGTGASKHFQDFIPRLDPRYTTVTPELPIEFS", "length": 458, "header": "tr|A0A4X1U3V8-1|A0A4X1U3R4_PIG Computationally mapped isoform of Transmembrane protein 135 OS=Sus scrofa OX=9823 GN=TMEM135 PE=3 SV=1 CANONICAL=A0A4X1U3R4-1" }, "locus": { "chromosome": "9", "start_pos": 21019238, "end_pos": 20791043, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099619.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099619.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075252.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075252.1" } ] } }, { "isoform_ac": "A0A8D1JGP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U3R4/entry#A0A8D1JGP8-1", "sequence": { "sequence": "MNKPSLRIYAPLYLIAAILRKRKLDYYLHKLLPEILQSASFLTANGALYMAFFCILRKILGKFYSWSPGFGAALPASYVAILIERKSRRGLLTIYMANLATETLFRMGVARGTITTLRNGEVLLFCITAAMYMFFFRCKDGLKGFTFSALRFIVGKEEIPTHSYSPEAAYARVEQKTEKHEEKLRRMNIIALVRKLVDSICKHGPRHRCCKHYEDNCISYCIKGFIRMFSVGYLIQCCLRIPSAFRHLFTQPSRLLSLFYNKENFQLGAFLGSFVSIYKGTSCFLRWVRNLDDELHAVIAGFLAGISMMFYKSTTISMYLASKLVETMYFKGIEAGKVPYFPHADTIIYSISTAICFQAAVMEVQNLRPSYWKFLLRLTKGKFNVMNRKVLDVFGTGASKHFQDFIPRLDPRYTTVTPELPIEFS", "length": 425, "header": "tr|A0A8D1JGP8-1|A0A4X1U3R4_PIG Computationally mapped isoform of Transmembrane protein 135 OS=Sus scrofa OX=9823 GN=TMEM135 PE=3 SV=1 CANONICAL=A0A4X1U3R4-1" }, "locus": { "chromosome": "9", "start_pos": 21019238, "end_pos": 20775306, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039023.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039023.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052949.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052949.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1JGP8", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JGP8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Y1H9-1", "protein_name": "Transmembrane protein 135", "gene_name": "TMEM135", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAALSKSIPHSCYEIGHTWHPRCSVAVLHVTQGALAESLRIYGTLYLIAAILRKRKLDYYLHKLLPEILQSTSFLTANGTLYIACFCILRKLLGKFYFWSPGFGAALPASYMAILIERKSRRGLLTIYMANQATETLFRMAVARGAIKPLRHGEVLLFCITSALFMFFFRCKDGLKGFTYSALKFIVGKEEIPTHSFSPEAAFSKTERKIKPCEKISQRMNLLALTKKLMDKVCKHGPRHRCCKHYEDNCISYCIKGFIRMFSIGYLIQCCLRIPSTFRHLFTKPSRLLSLFYNKENFQLGAFLGSFVSIYKGTSCFLRWVRNLDDELHALVAGCLAGISMMFYKSTTISMYLASKLVETIYFKGIEAGKVPYFPHADSVIYAISTSICFQAAVMEVQNLRPSYWKFLLRLTKGRFALMNRKVLDVFGTEASRNFKDFTPKLDPRYTVVPPELPLELS", "length": 458 }, "evidence": [ { "id": "A0A4X1U3R4", "url": "https://omabrowser.org/oma/group/A0A4X1U3R4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q3ZBE6-1", "protein_name": "Transmembrane protein 135", "gene_name": "TMEM135", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALSKSIPHNCYEIGHTWQPSCWLSFLHITRGALEESLKIYAPLYLIAAILRKRKLDYYLHKLLPEILQSASFLTANGALFMAFFCILRKILGKFYLWSPGFGAALPASYVAILVERKSRRGLLTIYMANLATETLFRMGVARGVITTLRNGEVLLFCITAAMYMFFFRCKDGLKGFTFSALRFIVGKEEIPTHSYSPEAAYAKVEQKTEKHEEKPRGMNIIALVRKLVDSVCKHGPRHRCCKHYEDNCISYCIKGFIRMFSVGYLIQCCLRIPSAFRHLFTQPSRLLSLFYNKENFQLGAFLGSFVSIYKGTSCFLRWVRNLDDELHAIIAGFLAGVSMMFYKSTTISMYLASKLVETMYFKGIEAGKVPYFPHADTIIYSISTAICFQAAVMEVQTLRPSYWKFLLRLTKGRFAVMNRKVLDVFGTGASKNFPDFTPRLDPRYTTVTPELPIEFS", "length": 458 }, "evidence": [ { "id": "A0A4X1U3R4", "url": "https://omabrowser.org/oma/group/A0A4X1U3R4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5U4F4-1", "protein_name": "Transmembrane protein 135", "gene_name": "Tmem135", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALSKSIPHNCYEIGHTWNPSCRVSFLQITWGALEESLRIYAPLYLIAAVLRKRKLEYYLYKLLPEILQSASFLTANGALYITFFCVLRKILGKFYSWTPGFGAALPASYVAILIERKSRRGLLTIYMANLATETLFRMGVARGTITTLRNGEVLLFCITAAMYMFFFRCKDGLKGFTFSALRFIVGKEEIPTHSYSPETAYAKVEQKREKHRGTTRAMSLIALVRSLVDSICKHGPRHRCCKHYEDNCISYCIKGFIRMFSVGYLIQCCLRIPSAFRHLFTEPSRLLSLFYNKENFQLGAFLGSFVSIYKGTSCFLRWIRNLDDELHAIVAGFLAGVSMMFYKSTTISMYLASKLVETMYFKGIEAGKVPYFPQADTIIYSISTAICFHAAVMEVQNLRPSYWKFLLRLTKGRFALMNRKALDVFGTGASREFHNFIPRLDPRYTVVTPELPIDFS", "length": 458 }, "evidence": [ { "id": "A0A4X1U3R4", "url": "https://omabrowser.org/oma/group/A0A4X1U3R4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86UB9-1", "protein_name": "Transmembrane protein 135", "gene_name": "TMEM135", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAALSKSIPHNCYEIGHTWHPSCRVSFLQITGGALEESLKIYAPLYLIAAILRKRKLDYYLHKLLPEILQSASFLTANGALYMAFFCILRKILGKFYSWTPGFGAALPASYVAILIERKSRRGLLTIYMANLATETLFRMGVARGTITTLRNGEVLLFCITAAMYMFFFRCKDGLKGFTFSALRFIVGKEEIPTHSFSPEAAYAKVEQKREQHEEKPGRMNMIGLVRKFVDSICKHGPRHRCCKHYEDNCISYCIKGFIRMFSVGYLIQCCLRIPSAFRHLFTQPSRLLSLFYNKENFQLGAFLGSFVSIYKGTSCFLRWIRNLDDELHAIIAGFLAGISMMFYKSTTISMYLASKLVETMYFKGIEAGKVPYFPHADTIIYSISTAICFQAAVMEVQTLRPSYWKFLLRLTKGKFAVMNRKVLDVFGTGASKHFQDFIPRLDPRYTTVTPELPTEFS", "length": 458 }, "evidence": [ { "id": "A0A4X1U3R4", "url": "https://omabrowser.org/oma/group/A0A4X1U3R4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CYV5-1", "protein_name": "Transmembrane protein 135", "gene_name": "Tmem135", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAALSKSIPHNCYEIGHTWHPSCRVSFLQITWGALEESLRIYAPLYLIAAVLRKRKLEYYLYKLLPEILQSASFLTANGALYITFFCILRKILGKFYSWTPGFGAALPASYVAILIERKSRRGLLTIYMANLATETLFRMGVARGTITTLRNGEVLLFCITAAMYMFFFRCKDGLKGFTFSALRFIVGKEEIPTHSYSPETAYAKVEQKREKHKGTPRAMSIIALVRTLVDSVCKHGPRHRCCKHYEDNCISYCIKGFIRMFSVGYLIQCCLRIPSAFRHLFTEPSRLLSLFYNKENFQLGAFLGSFVSIYKGTSCFLRWIRNLDDELHAIVAGFLAGVSMMFYKSTTISMYLASKLVETMYFKGIEAGKVPYFPQADTIIYSISTAICFHAAVMEVQNLRPSYWKFLLRLTKGRFALMNRKALDVFGTGASREFHNFIPRLDPRYTVVTPELPIDFS", "length": 458 }, "evidence": [ { "id": "A0A4X1U3R4", "url": "https://omabrowser.org/oma/group/A0A4X1U3R4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VHQ5-1", "protein_name": "Transmembrane protein 135 N-terminal domain-containing protein", "gene_name": "Dmel\\CG11737", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAGQSKLIDPLCITCKEFQHPWTDHCVSATAGILLSATPYCLRVYTIVYALSLLMRHRIPSRDDLRKTLLGIIQSTAFLVTNAYTFILYNCALRHMLGRYNFYTVAFVPCFLASFSAILVERPARRPLLTLYVANVATEALWKMAESRGWVRSVPNGQTLIFGVSMAALLYIYRTGTTKDSIFNILRIFVGKEEAGPIVKSGPAVPGEQPAPDRRRPTVSFSTVSDWVRVYSNLIRAKHESCRHQQSCIGYSLMGGIKPFVGGVGLQVALKLVMNVKRITAGKMPWKKMIFNRGTLQLGIFMGSFSFLYKSVSCLLRHSFNRDDARFAIPASLIASISFTQYPDNTVALYVMWKALQILCTKGQEHGIVPHIPNFMLFLYSFFTAVLFHAGILEPKSLRPSYYKFLQAISGDRLSKFNLSAFDVFGLSSQQQALDTIKALNIVEKSSLPAYSFAS", "length": 455 }, "evidence": [ { "id": "A0A4X1U3R4", "url": "https://omabrowser.org/oma/group/A0A4X1U3R4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U3R4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U3R4" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U3R4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U3R4" } ], "pmid": "" }, { "name": "peroxisomal membrane", "id": "GO:0005778", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005778", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U3R4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U3R4" } ], "pmid": "" }, { "name": "lipid droplet", "id": "GO:0005811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005811", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U3R4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U3R4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of mitochondrial fission", "id": "GO:0090140", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090140", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U3R4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U3R4" } ], "pmid": "" }, { "name": "fatty acid biosynthetic process", "id": "GO:0006633", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006633", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U3R4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U3R4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1U3R4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U3R4" }, { "id": "PF15982", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15982" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transmembrane protein 135 N-terminal", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 133, "start_aa": "Pro", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1T8A6-1", "uniprot_ac": "A0A4X1T8A6", "uniprot_id": "A0A4X1T8A6_PIG", "mass": { "chemical_mass": 12988.0, "monoisotopic_mass": 12988.0 }, "refseq": { "ac": "XP_003361425", "name": "gamma-glutamylcyclotransferase isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003361425" }, "gene_names": [ { "name": "GGCT", "type": "recommended", "evidence": [ { "id": "A0A4X1T8A6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8A6" } ] }, { "name": "GGCT", "type": "synonym", "evidence": [ { "id": "XP_003361425", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003361425" } ] } ], "protein_names": [ { "name": "gamma-glutamylcyclotransferase", "type": "recommended", "evidence": [ { "id": "A0A4X1T8A6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8A6/entry#names_and_taxonomy" } ] }, { "name": "4.3.2.9", "type": "synonym", "evidence": [ { "id": "A0A4X1T8A6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8A6/entry#names_and_taxonomy" } ] }, { "name": "gamma-glutamylcyclotransferase isoform X3", "type": "synonym", "evidence": [ { "id": "XP_003361425", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003361425" } ] } ], "function": [ { "annotation": "Catalyzes the formation of 5-oxoproline from gamma-glutamyl dipeptides and may play a significant role in glutathione homeostasis. 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"database": "Ensembl Gene", "id": "ENSSSCG00000016679", "url": "https://www.ensembl.org/id/ENSSSCG00000016679" } ] } } ], "crossref": [ { "id": "A0A4X1T8A6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1T8A6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016679", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016679", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06661", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06661", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512447", "url": "https://www.ncbi.nlm.nih.gov/gene/100512447", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017939", "database": "InterPro", "categories": [ "Protein 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"A0A4X1T8A6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8A6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T8A6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8A6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6W3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6W3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6W3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SII1", "url": "https://www.uniprot.org/uniprotkb/F1SII1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SII1-1", "url": "https://www.uniprot.org/uniprotkb/F1SII1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANSGGEDRGGQEEESFLYFAYGSNLLMERIHLRNPSAEFYCVARLQDFKLDFGNSQGKTSETWHGGIATIFESPGDEVWGVVWKMNKSNLSSLDESFARVQKRMVCHWSIKRS", "length": 114, "header": "tr|A0A4X1T8A6-1|A0A4X1T8A6_PIG Isoform 1 of gamma-glutamylcyclotransferase OS=Sus scrofa OX=9823 GN=GGCT PE=4 SV=1 CANONICAL=A0A4X1T8A6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1T868-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8A6/entry#A0A4X1T868-1", "sequence": { "sequence": "MANSGGEDRGGQEEESFLYFAYGSNLLMERIHLRNPSAEFYCVARLQDFKLDFGNSQGKTSETWHGGIATIFESPGDEVWGVVWKMNKSNLSSLDEQEGVKSGMYVPIEVNVSAQKGKEITCRSYQMTNYESAPPSPQYKKIICTGAKENGLPLEYQKKLNAIEPNDYKGKVSEEIEDIIKRGETKAH", "length": 188, "header": "tr|A0A4X1T868-1|A0A4X1T8A6_PIG Computationally mapped isoform of gamma-glutamylcyclotransferase OS=Sus scrofa OX=9823 GN=GGCT PE=4 SV=1 CANONICAL=A0A4X1T8A6-1" }, "locus": { "chromosome": "18", "start_pos": 42418062, "end_pos": 42410991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078105.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078105.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072697.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072697.2" } ] } }, { "isoform_ac": "A0A4X1T8A6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8A6/entry#A0A4X1T8A6-1", "sequence": { "sequence": "MANSGGEDRGGQEEESFLYFAYGSNLLMERIHLRNPSAEFYCVARLQDFKLDFGNSQGKTSETWHGGIATIFESPGDEVWGVVWKMNKSNLSSLDESFARVQKRMVCHWSIKRS", "length": 114, "header": "tr|A0A4X1T8A6-1|A0A4X1T8A6_PIG Isoform 1 of gamma-glutamylcyclotransferase OS=Sus scrofa OX=9823 GN=GGCT PE=4 SV=1 CANONICAL=A0A4X1T8A6-1" }, "locus": { "chromosome": "18", "start_pos": 42417976, "end_pos": 42410991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084924.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084924.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073129.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073129.2" } ] } }, { "isoform_ac": "A0A8W4F6W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8A6/entry#A0A8W4F6W3-1", "sequence": { "sequence": "MANSGGEDRGGQEEESFLYFAYGSNLLMERIHLRNPSAEFYCVARLQIICTGAKENGLPLEYQKKLNAIEPNDYKGKVSEEIEDIIKRGETKAH", "length": 94, "header": "tr|A0A8W4F6W3-1|A0A4X1T8A6_PIG Computationally mapped isoform of gamma-glutamylcyclotransferase OS=Sus scrofa OX=9823 GN=GGCT PE=4 SV=1 CANONICAL=A0A4X1T8A6-1" }, "locus": { "chromosome": "18", "start_pos": 42418062, "end_pos": 42410991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105910.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105910.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074992.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074992.1" } ] } }, { "isoform_ac": "F1SII1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8A6/entry#F1SII1-1", "sequence": { "sequence": "MANSGGEDRGGQEEESFLYFAYGSNLLMERIHLRNPSAEFYCVARLQDFKLDFGNSQGKTSETWHGGIATIFESPGDEVWGVVWKMNKSNLSSLDEQEGVKSGMYVPIEVNVSAQKGKEITCRSYQMTNYESAPPSPQYKKLEVGKKSHCFLKPGKPLLQTQEKNSGWRARHPFQTPKLRHLLAGWQV", "length": 188, "header": "tr|F1SII1-1|A0A4X1T8A6_PIG Computationally mapped isoform of gamma-glutamylcyclotransferase OS=Sus scrofa OX=9823 GN=GGCT PE=4 SV=5 CANONICAL=A0A4X1T8A6-1" }, "locus": { "chromosome": "18", "start_pos": 42417386, "end_pos": 42410991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018160.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018160.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017669.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017669.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SII1", "url": "https://www.uniprot.org/uniprotkb/F1SII1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512447", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512447", "resource": "KEGG Pathway" }, { "id": "R-SSC-174403", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174403", "resource": "Reactome", "description": "Glutathione synthesis and recycling" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZPV8-1", "protein_name": "Gamma-glutamylcyclotransferase", "gene_name": "Ggct", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSCWRGQVDMASSDCEDHAGQEGETFLYFAYGSNLLTERIHLRNPSAVFCCVARLQDFKLDFGNFQGKMSERWHGGIATIFQSPGDEVWGVVWKMNKSNLSSLDEQEGVKSGVYVVIEIKVTTQQGKDITCRSYLMTNYERAPPSPQYKKVICMGAKENGLPLEYQEKLNVIEPNDYKGKISDEMEDIIKKGEAKLL", "length": 198 }, "evidence": [ { "id": "A0A4X1T8A6", "url": "https://omabrowser.org/oma/group/A0A4X1T8A6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HJM5-1", "protein_name": "Gamma-glutamylcyclotransferase", "gene_name": "Ggct", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASSGCEDHAGQEGETFLYFAYGSNLLTERIHLRNPSAVFCCVARLQDFKLDFGNFQGKTSERWHGGIATIFQSPGDEVWGVVWKMNKSNLSSLDEQEGVKSGVYVVIEIKVSTQEGKEITCRSYLMTNYESAPPSPQYKKVICMGAKENGLPLEYQEKLKAIEPNDYKGKISDEMEEIIKKGESKLYRT", "length": 190 }, "evidence": [ { "id": "A0A4X1T8A6", "url": "https://omabrowser.org/oma/group/A0A4X1T8A6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O75223-1", "protein_name": "Gamma-glutamylcyclotransferase", "gene_name": "GGCT", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MANSGCKDVTGPDEESFLYFAYGSNLLTERIHLRNPSAAFFCVARLQDFKLDFGNSQGKTSQTWHGGIATIFQSPGDEVWGVVWKMNKSNLNSLDEQEGVKSGMYVVIEVKVATQEGKEITCRSYLMTNYESAPPSPQYKKIICMGAKENGLPLEYQEKLKAIEPNDYTGKVSEEIEDIIKKGETQTL", "length": 188 }, "evidence": [ { "id": "A0A4X1T8A6", "url": "https://omabrowser.org/oma/group/A0A4X1T8A6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q32LE4-1", "protein_name": "Gamma-glutamylcyclotransferase", "gene_name": "GGCT", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MANFGCEDLRSQDGESFLYFAYGSNLLTERIHLRNPSAVFYSVARLQDFKLDFGNPQGKTSETWHGGIATIFESPGDEVWGVVWKMNKSNLSSLDKQEGVKSGMYVPIEVTVSTQEGKEITCRSYQMTNYESVPPSPQYKKVICMGAKENGLPLEYQKKLNSIEPNDYKGKVSEEIEDIIKKGEAKTH", "length": 188 }, "evidence": [ { "id": "A0A4X1T8A6", "url": "https://omabrowser.org/oma/group/A0A4X1T8A6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9D7X8-1", "protein_name": "Gamma-glutamylcyclotransferase", "gene_name": "Ggct", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSDCEGHAGQEGETFLYFAYGSNLLTERIHLRNPSAVFCCVARLQDFKLDFGNFQGKMSERWHGGIATIFQSPGDEVWGVVWRMNKSNISSLDEQEGVKSGVYVVIEIKVSTREGKEITCRSYLMTNYESAPPSPQYKKVICMGAKENGLPQEYQEKLKAIEPNEYKGKISDEMEDIIKKGESKLS", "length": 188 }, "evidence": [ { "id": "A0A4X1T8A6", "url": "https://omabrowser.org/oma/group/A0A4X1T8A6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "gamma-glutamylcyclotransferase activity", "id": "GO:0003839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003839", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T8A6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8A6" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T8A6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8A6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T8A6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8A6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "release of cytochrome c from mitochondria", "id": "GO:0001836", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001836", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T8A6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8A6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "20505", "name": "", "equation": "an alpha-(gamma-L-glutamyl)-L-amino acid = 5-oxo-L-proline + an L-alpha-amino acid", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "20505", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/20505" } ] }, { "id": "R-SSC-1247922", "name": "GGCT transforms gGluCys to OPRO", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1247922", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1247922" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 87, "end_pos": 89 }, { "start_pos": 90, "end_pos": 92 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { 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"https://www.ncbi.nlm.nih.gov/protein/XP_001924864" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TIC1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TIC1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ADD3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TIC1", "locus": { "chromosome": "14", "start_pos": 120583722, "end_pos": 120451575, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010621", "url": "https://www.ensembl.org/id/ENSSSCG00000010621" } ] } } ], "crossref": [ { "id": "A0A4X1TIC1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TIC1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100155574", "url": "https://www.ncbi.nlm.nih.gov/gene/100155574", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001303", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001303", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051017", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051017", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155574", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155574", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XVRISKE", "url": "https://omabrowser.org/oma/group/XVRISKE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TEQ8", "url": "https://www.orthodb.org/?gene=A0A4X1TEQ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TIC1", "url": "https://www.orthodb.org/?gene=A0A4X1TIC1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10672", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10672", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10672:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10672:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00596", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00596", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5223345", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5223345", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9035034", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9035034", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001924864", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924864", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TEQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TEQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TEQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TEQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TIC1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TIC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TIC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TIC1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0SZT5", "url": "https://www.uniprot.org/uniprotkb/A0A8D0SZT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0SZT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0SZT5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSDASQGVVTTPPPPSMPHKERYFDRINENDPEYIRERNMSPDLRQDFNMMEQRKRVTQILQSPAFREDLECLIQEQMKKGHNPTGLLALQQIADYIMANSFSGFTSPPLSLGMVTPINDLPGADTSSYVKGEKLTRCKLASLYRLADLFGWAHLANTYISVRISKEQDHIIIIPRGLSFSEATASNLVKVNIIGEVVDQGSTNLKIDHTGFSPHAAIYSTRPDVKCVIHVHTLATAAVSSMKCGILPISQESLILGDVAYYDYQGSLDEQEERIQLQKVLGPSCKVLVLRNHGVVALGETVEEAFHYIFNVQIACEIQVQALAGAGGVDNLLVLDLQKYKAFTHSVAASGGGGVNMGSHQKWKIGELEFEGLMRTLDNLGYRTGYAYRHPLIREKPRHKSDVEIPATVTAFSFEDDTVPLSPLKYMAQRQQREKTRWLNSPNTYMKVNVPEESRNGETSPRTKITWMKAEDSSKVSSGTPIKIEDPNQFVPLNTNPNEVLEKRNKIREQNRYDLKTAGPQSQLLAGIVVDKPPSTMQFEDDDHAPPAPPNPFSHLTEGELEEYKKTIERKQQGLEENHELFSKSFISMDVPVLIVNGKDDVHGIEDELAQRVSRLTTSTTIENIEITIKSPEKIEEVPSPEGSPSKSPSKKKKKFRTPSFLKKNKKKEKVEA", "length": 674, "header": "tr|A0A4X1TIC1-1|A0A4X1TIC1_PIG Isoform 1 of Adducin 3 OS=Sus scrofa OX=9823 GN=ADD3 PE=1 SV=1 CANONICAL=A0A4X1TIC1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TEQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TIC1/entry#A0A4X1TEQ8-1", "sequence": { "sequence": "MSSDASQGVVTTPPPPSMPHKERYFDRINENDPEYIRERNMSPDLRQDFNMMEQRKRVTQILQSPAFREDLECLIQEQMKKGHNPTGLLALQQIADYIMANSFSGFTSPPLSLGMVTPINDLPGADTSSYVKGEKLTRCKLASLYRLADLFGWAHLANTYISVRISKEQDHIIIIPRGLSFSEATASNLVKVNIIGEVVDQGSTNLKIDHTGFSPHAAIYSTRPDVKCVIHVHTLATAAVSSMKCGILPISQESLILGDVAYYDYQGSLDEQEERIQLQKVLGPSCKVLVLRNHGVVALGETVEEAFHYIFNVQIACEIQVQALAGAGGVDNLLVLDLQKYKAFTHSVAASGGGGVNMGSHQKWKIGELEFEGLMRTLDNLGYRTGYAYRHPLIREKPRHKSDVEIPATVTAFSFEDDTVPLSPLKYMAQRQQREKTRWLNSPNTYMKVNVPEESRNGETSPRTKITWMKAEDSSKVSSGTPIKIEDPNQFVPLNTNPNEVLEKRNKIREQNRYDLKTAGPQSQLLAGIVVDKPPSTMQFEDDDHAPPAPPNPFSHLTEGELEEYKKTIERKQQGLEDAEQDLLSDDASSVSQIQSQTQSPQNIPEKLEENHELFSKSFISMDVPVLIVNGKDDVHGIEDELAQRVSRLTTSTTIENIEITIKSPEKIEEVPSPEGSPSKSPSKKKKKFRTPSFLKKNKKKEKVEA", "length": 706, "header": "tr|A0A4X1TEQ8-1|A0A4X1TIC1_PIG Computationally mapped isoform of Adducin 3 OS=Sus scrofa OX=9823 GN=ADD3 PE=1 SV=1 CANONICAL=A0A4X1TIC1-1" }, "locus": { "chromosome": "14", "start_pos": 120581754, "end_pos": 120553006, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054427.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054427.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045998.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045998.1" } ] } }, { "isoform_ac": "A0A4X1TIC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TIC1/entry#A0A4X1TIC1-1", "sequence": { "sequence": "MSSDASQGVVTTPPPPSMPHKERYFDRINENDPEYIRERNMSPDLRQDFNMMEQRKRVTQILQSPAFREDLECLIQEQMKKGHNPTGLLALQQIADYIMANSFSGFTSPPLSLGMVTPINDLPGADTSSYVKGEKLTRCKLASLYRLADLFGWAHLANTYISVRISKEQDHIIIIPRGLSFSEATASNLVKVNIIGEVVDQGSTNLKIDHTGFSPHAAIYSTRPDVKCVIHVHTLATAAVSSMKCGILPISQESLILGDVAYYDYQGSLDEQEERIQLQKVLGPSCKVLVLRNHGVVALGETVEEAFHYIFNVQIACEIQVQALAGAGGVDNLLVLDLQKYKAFTHSVAASGGGGVNMGSHQKWKIGELEFEGLMRTLDNLGYRTGYAYRHPLIREKPRHKSDVEIPATVTAFSFEDDTVPLSPLKYMAQRQQREKTRWLNSPNTYMKVNVPEESRNGETSPRTKITWMKAEDSSKVSSGTPIKIEDPNQFVPLNTNPNEVLEKRNKIREQNRYDLKTAGPQSQLLAGIVVDKPPSTMQFEDDDHAPPAPPNPFSHLTEGELEEYKKTIERKQQGLEENHELFSKSFISMDVPVLIVNGKDDVHGIEDELAQRVSRLTTSTTIENIEITIKSPEKIEEVPSPEGSPSKSPSKKKKKFRTPSFLKKNKKKEKVEA", "length": 674, "header": "tr|A0A4X1TIC1-1|A0A4X1TIC1_PIG Isoform 1 of Adducin 3 OS=Sus scrofa OX=9823 GN=ADD3 PE=1 SV=1 CANONICAL=A0A4X1TIC1-1" }, "locus": { "chromosome": "14", "start_pos": 120581754, "end_pos": 120553006, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060301.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060301.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059518.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059518.2" } ] } }, { "isoform_ac": "A0A8D0SZT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TIC1/entry#A0A8D0SZT5-1", "sequence": { "sequence": "MSSDASQGVVTTPPPPSMPHKERYFDRINENDPEYIRERNMSPDLRQDFNMMEQRKRVTQILQSPAFREDLECLIQEQMKKGHNPTGLLALQQIADYIMANSFSGFTSPPLSLGMVTPINDLPGADTSSYVKGEKLTRCKLASLYRLADLFGWAHLANTYISVRISKEQDHIIIIPRGLSFSEATASNLVKVNIIGEVVDQGSTNLKIDHTGFSPHAAIYSTRPDVKCVIHVHTLATAAVSSMKCGILPISQESLILGDVAYYDYQGSLDEQEERIQLQKVLGPSCKVLVLRNHGVVALGETVEEAFHYIFNVQIACEIQVQALAGAGGVDNLLVLDLQKYKAFTHSVAASGGGGVNMGSHQKWKIGELEFEGLMRTLDNLGYRTGYAYRHPLIREKPRHKSDVEIPATVTAFSFEDDTVPLSPLKYMAQRQQREKTRWLNSPNTYMKVNVPEESRNGETSPRTKITTMQFEDDDHAPPAPPNPFSHLTEGELEEYKKTIERKQQGLEDAEQDLLSDDASSVSQIQSQTQSPQNIPEKLEENHELFSKSFISMDVPVLIVNGKDDVHGIEDELAQRVSRLTTSTTIENIEITIKSPEKIEEVPSPEGSPSKSPSKKKKKFRTPSFLKKNKKKEKVEA", "length": 637, "header": "tr|A0A8D0SZT5-1|A0A4X1TIC1_PIG Computationally mapped isoform of Adducin 3 OS=Sus scrofa OX=9823 GN=ADD3 PE=1 SV=1 CANONICAL=A0A4X1TIC1-1" }, "locus": { "chromosome": "14", "start_pos": 120581754, "end_pos": 120553006, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037328.2", "url": "https://www.ensembl.org/id/ENSSSCT00000037328.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058768.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058768.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0SZT5", "url": "https://www.uniprot.org/uniprotkb/A0A8D0SZT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155574", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155574", "resource": "KEGG Pathway" }, { "id": "R-SSC-5223345", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5223345", "resource": "Reactome", "description": "Miscellaneous transport and binding events" }, { "id": "R-SSC-9035034", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9035034", "resource": "Reactome", "description": "RHOF GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZCD1-1", "protein_name": "Adducin 3 (gamma)", "gene_name": "ADD3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSTDASQVVITSPPAATMPHKERYFDRINENDPEYLRERNMSPDLRQDFNMMEQRKRVTQILQSPAFREDLECLIQEQMKKGNNPTGLLALQQIADYITASSFAGFSSSSLSHGMITPINDLPGIDTSSFVKGEKLTRCKLASLYRLADLFGWAHLPNAYITVRVSKEHDHILIIPRGLSFSEASASNLIKVNILGDVVDQGSTTLSIDSAGFSPHVAIYSTRPDVRCVIHIHTPATAAVSSMKCGILPISQEALILGDVAYYNYQGSLDDQEERIQLQKVLGPSCKVLVLRNHGVVALGETLEEAFHYIFNVQLACETQVHALAGAGGIDNLLLLDLQKFKPFTHGVAAGGGGGVNMSSQQKWKVGEQEFEALMRMLDNLVRAHLWQRPCSLWELLSVGSAAVWQMILSGFFASLKMKGYRTGYAYRQPLVREKPRHKSDVEIPATVTAFSFEDDAVPLSPLKFLAQRQQREKTRWLNSPNTYLKVNVPEESWNGEASPRTKITWMKADDSSKTSGGTPIKIEDPNQFVPLNTNPSEVLEKRNKIREQNRYDLKTAGPQSQLLAGIVVDKKPSPPMQFEDDEHAPPAPPNPFSHLTEKELEEYKKTIERKQLGLEDAEQELFSDDGSSVSQIQSQTQSPQNVPEKLEENHADLYTQSANLISAELPVVVVNGKEDAHDVEEDLTKRVSQLTTSTVESVEITIKSSEKIEEALSPEGSPSKSPSKKKKKFRTPSFLKKNKKKEKVEV", "length": 747 }, "evidence": [ { "id": "A0A4X1TIC1", "url": "https://omabrowser.org/oma/group/A0A4X1TIC1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q62847-1", "protein_name": "Gamma-adducin", "gene_name": "Add3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSDTSQAVITTPPPPSMPHKERYFDRINESDPEYLRERNMSPDLRQDFNMMEQRKRVTQILQSPAFREDLECLIQEQMKKGHDPTGLLALQQIADYIMANSFTGFSSPPLSLGMVTPINDLPGADTSSYVKGEKLTRCKLASLYRLADLFGWAHLANTYISVRVSKEQDHIIIIPRGLSFSEATASALVKVNIIGEVVDQGSTNLKIDHSGFSPHAAIYSTRPDVKCVIHIHTLATAAVSSMKCGILPISQESLILGDVAYYDYQGSLDEEEERIELQKVLGPSCKVLVLRNHGVVALGETLEEAFHYIFNVQMACEIQVQAVAGAGGVDNLLILDLQKYKAFTHGVAMTGGGGVNMGSHQKWKVGEIEFEGLMRTLDNLGYRTGYAYRHPLVREKPRHKSDVEIPATVTAFSFEDDSVPLSPLKYMAQRQQREKTRWLNSPNTYMKVNVPEESRNGETSPRTKITWMKAEDPSKVSSGTPIKIEDPNQFVPLNTNPTEVLEKRNKIREQNRYDLKTAGPQSQLLAGIVVDKPPSTMRFEDDDQGPPAPPNPFSHLMEGELEEYTKTIERKQQGLDDAEQESLSDDAASVSQIQSQTQSPQSVPERLEENHELFSKSFTSVDVPVIVNGKDEMHDVEDELAQRVSRLTTSTTIENIEITIKSPDRTEEVLSPDGSPSKSPSKKKKKFRTPSFLKKNKKKEKVEA", "length": 705 }, "evidence": [ { "id": "A0A4X1TIC1", "url": "https://omabrowser.org/oma/group/A0A4X1TIC1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9QYB5-1", "protein_name": "Gamma-adducin", "gene_name": "Add3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSDTSPAVVTTPPPPSMPHKERYFDRINESDPEYLRERNMSPDLRQDFNMMEQRKRVTQILQSPAFREDLECLIQEQMKKGHNPSGLLALQQIADYIVTSSFSGFSSPSLSLGMVTPINDLPGADTSSYVKGEKLTRCKLASLYRLADLFGWAHLANTYISVRISKEQDHIIIIPRGLSFSEATASTLVKVNIIGEVVDQGSTDLKIDHTGFSPHAAIYSTRPDVKCVIHIHTLATAAVSSMKCGILPISQESLILGDVAYYDYQGSLDEEEERIELQKVLGPSCKVLVLRNHGMVALGETLEEAFHYIFNVQMACEIQVQAVAGAGGVDNLLVLDLQKYKAFTHGVAMSGGGGVNMASHQKWKVGEIEFEGLMRTLDNLGYRTGYAYRHPLVREKPRHKSDVEIPATVTAFSFEDDSAPLSPLKFMAQRQQREKTRWLNSPNTYMKVNVPEESRNGETSPRTKITWMKAEDSSKVSSGTPIKIEDPNQFVPLNTNPTEVLEKRNKIREQNRYDLKTAGPQSQLLAGIVVDKPPSTMQFDDDDQGPPAPPNPFSHLLEGELEEYTKTIERKQQGLDDAEQGSLSDDAASVSQIQSQTQSPQSVPERLEENHELFSKSFTSMDAPVMIMNGKDEMHDVEDELAQRVSRLTTSTTIENIEITIKSPERTEEVLSPDGSPSKSPSKKKKKFRTPSFLKKNKKKEKVEA", "length": 706 }, "evidence": [ { "id": "A0A4X1TIC1", "url": "https://omabrowser.org/oma/group/A0A4X1TIC1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UEY8-1", "protein_name": "Gamma-adducin", "gene_name": "ADD3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSDASQGVITTPPPPSMPHKERYFDRINENDPEYIRERNMSPDLRQDFNMMEQRKRVTQILQSPAFREDLECLIQEQMKKGHNPTGLLALQQIADYIMANSFSGFSSPPLSLGMVTPINDLPGADTSSYVKGEKLTRCKLASLYRLVDLFGWAHLANTYISVRISKEQDHIIIIPRGLSFSEATASNLVKVNIIGEVVDQGSTNLKIDHTGFSPHAAIYSTRPDVKCVIHIHTLATAAVSSMKCGILPISQESLLLGDVAYYDYQGSLEEQEERIQLQKVLGPSCKVLVLRNHGVVALGETLEEAFHYIFNVQLACEIQVQALAGAGGVDNLHVLDFQKYKAFTYTVAASGGGGVNMGSHQKWKVGEIEFEGLMRTLDNLGYRTGYAYRHPLIREKPRHKSDVEIPATVTAFSFEDDTVPLSPLKYMAQRQQREKTRWLNSPNTYMKVNVPEESRNGETSPRTKITWMKAEDSSKVSGGTPIKIEDPNQFVPLNTNPNEVLEKRNKIREQNRYDLKTAGPQSQLLAGIVVDKPPSTMQFEDDDHGPPAPPNPFSHLTEGELEEYKRTIERKQQGLEDAEQELLSDDASSVSQIQSQTQSPQNVPEKLEENHELFSKSFISMEVPVMVVNGKDDMHDVEDELAKRVSRLSTSTTIENIEITIKSPEKIEEVLSPEGSPSKSPSKKKKKFRTPSFLKKNKKKEKVEA", "length": 706 }, "evidence": [ { "id": "A0A4X1TIC1", "url": "https://omabrowser.org/oma/group/A0A4X1TIC1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "condensed nuclear chromosome", "id": "GO:0000794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000794", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TIC1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TIC1" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TIC1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TIC1" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TIC1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TIC1" } ], "pmid": "" }, { "name": "brush border", "id": "GO:0005903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005903", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TIC1", "url": 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"https://www.uniprot.org/uniprotkb/A0A4X1U7X2/entry#A0A287B8I3-1", "sequence": { "sequence": "MSTWKTRLAEGLKSPSSSMHPFPCSALLACFGNARETAPFDPPSTADTHATIYAQPAAKASQHPSQPSGDEGSPEKRPDSGSHSERNGSANQTSSTHSADQPTDTPKDVPGSPGRGSDGEAVTFQTSIPRPSIIETPAEEEGSPKEPPCLGMGKRMKSDSPLEEPDLQDAYLCPRSIMAEPDYIDDDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIKQKEEEAQKKKSDLEIELLKRQQKLEQLELEKQKLQEEQENAPEFVKVKGNLRRTGQEVAQAQES", "length": 308, "header": "tr|A0A287B8I3-1|A0A4X1U7X2_PIG Computationally mapped isoform of Family with sequence similarity 107 member B OS=Sus scrofa OX=9823 GN=FAM107B PE=4 SV=2 CANONICAL=A0A4X1U7X2-1" }, "locus": { "chromosome": "10", "start_pos": 47220515, "end_pos": 46983700, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061714.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061714.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052623.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052623.2" } ] } }, { "isoform_ac": "A0A4X1U7X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7X2/entry#A0A4X1U7X2-1", "sequence": { "sequence": "MAEPDYIDDDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIKQKEEEAQKKKSDLEIELLKRQQKLEQLELEKQKLQEEQENAPEFVKVKGNLRRTGQEVAQAQES", "length": 131, "header": "tr|A0A4X1U7X2-1|A0A4X1U7X2_PIG Isoform 1 of Family with sequence similarity 107 member B OS=Sus scrofa OX=9823 GN=FAM107B PE=4 SV=1 CANONICAL=A0A4X1U7X2-1" }, "locus": { "chromosome": "10", "start_pos": 47220515, "end_pos": 47212015, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048103.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048103.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044747.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044747.2" } ] } }, { "isoform_ac": "A0A5G2R1P7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7X2/entry#A0A5G2R1P7-1", "sequence": { "sequence": "MWCGSPAAMVAFCAGLWFSSPGRAQGQEAGGRPGADCEVCKEFLSRFYNSLIARGVNFSVDTIEKELISLCLDVKGKENRLCYYLGATKDAATKILSEVTRPMSVHMPVMKICEKLKKMDSQICELKYEKKLDLASVDLSKMRAMSTWKTRLAEGLKSPSSSMHPFPCSALLACFGNARETAPFDPPSTADTHATIYAQPAAKASQHPSQPSGDEGSPEKRPDSGSHSERNGSANQTSSTHSADQPTDTPKDVPGSPGRGSDGEAVTFQTSIPRPSIIETPAVSVPRANTEGMVVESSSAWGKLSGKELVKHY", "length": 313, "header": "tr|A0A5G2R1P7-1|A0A4X1U7X2_PIG Computationally mapped isoform of Family with sequence similarity 107 member B OS=Sus scrofa OX=9823 GN=FAM107B PE=4 SV=1 CANONICAL=A0A4X1U7X2-1" }, "locus": { "chromosome": "10", "start_pos": 46984206, "end_pos": 46935702, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085338.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085338.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071106.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071106.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1P7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1P7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "F1MTK7-1", "protein_name": "Family with sequence similarity 107 member B", "gene_name": "FAM107B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAEPDYIDDDNPELIRPQKLVNPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIKQKEEEAQKKKSDLEIELLKRQQKLEQLELEKQKLQEEQENAPEFVKVKGNLRRTGQEVAQTQES", "length": 131 }, "evidence": [ { "id": "A0A4X1U7X2", "url": "https://omabrowser.org/oma/group/A0A4X1U7X2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3GVR4-1", "protein_name": "Protein FAM107B isoform X1", "gene_name": "Fam107b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAVCAARLRGADSLLEETDPKDSYLSPRNIMAEPDYIEDDNPELIRPQKLINPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMERRKRDQVIKQKEEEAQKKKSDLEIELLKRQQKLEQLELEKQKLQEEQENAPEFVKVKGNLRRTGQEVAQAQES", "length": 161 }, "evidence": [ { "id": "A0A4X1U7X2", "url": "https://omabrowser.org/oma/group/A0A4X1U7X2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3TGF2-1", "protein_name": "Protein FAM107B", "gene_name": "Fam107b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEPDYIEDDNPELIRPQKLINPVKSSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKRRRDQVIKQKEEEAQKKKSDLEIELLKRQQKLEQLELEKQKLQEEQENAPEFVKVKGNLRRTGQEVAQAQES", "length": 131 }, "evidence": [ { "id": "A0A4X1U7X2", "url": "https://omabrowser.org/oma/group/A0A4X1U7X2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H098-1", "protein_name": "Protein FAM107B", "gene_name": "FAM107B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEPDYIEDDNPELIRPQKLINPVKTSRNHQDLHRELLMNQKRGLAPQNKPELQKVMEKRKRDQVIKQKEEEAQKKKSDLEIELLKRQQKLEQLELEKQKLQEEQENAPEFVKVKGNLRRTGQEVAQAQES", "length": 131 }, "evidence": [ { "id": "A0A4X1U7X2", "url": "https://omabrowser.org/oma/group/A0A4X1U7X2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U7X2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7X2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TVQ8-1", "uniprot_ac": "A0A4X1TVQ8", "uniprot_id": "A0A4X1TVQ8_PIG", "mass": { "chemical_mass": 60944.0, "monoisotopic_mass": 60944.0 }, "refseq": { "ac": "XP_003129848", "name": "coiled-coil domain-containing protein 82 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129848" }, "gene_names": [ { "name": "CCDC82", "type": "recommended", "evidence": [ { "id": "A0A4X1TVQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVQ8" } ] }, { "name": "CCDC82", "type": "synonym", "evidence": [ { "id": "XP_003129848", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129848" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 82", "type": "synonym", "evidence": [ { "id": "A0A4X1TVQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVQ8/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 82 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003129848", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129848" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TVQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVQ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC82", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVQ8", "locus": { "chromosome": "9", "start_pos": 28376732, "end_pos": 28407348, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014972", "url": "https://www.ensembl.org/id/ENSSSCG00000014972" } ] } } ], "crossref": [ { "id": "A0A4X1TVQ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TVQ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014972", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014972", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518852", "url": "https://www.ncbi.nlm.nih.gov/gene/100518852", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518852", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518852", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HYVHFKR", "url": "https://omabrowser.org/oma/group/HYVHFKR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TVQ8", "url": "https://www.orthodb.org/?gene=A0A4X1TVQ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14689", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14689", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14689:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14689:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13846", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13846", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129848", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129848", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BC76", "url": "https://www.uniprot.org/uniprotkb/A0A287BC76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BC76-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BC76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TVQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVQ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TVQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVQ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FB30", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FB30-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB30-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVHVRRCETRKSSKTQECEQKSRVDWRRTKRSSLSQLCDSDDELESDDEFDSDESVDNNASIDSDEELDNSKGLDSIKKPENERELKLIKVESEGNNSEHLINTSNTSVYEEEKNKTKHESINLSDHREHSSQEEDDLNIHTGQITEEDLEEEHIKRGKRKRISSVMYDSDESDDSDILVRKVGIKRPRRVVEDECSSVEMEQKNPEKALAAKKQEQLQKLKELSKQRSRQRRTSSRDFEDSEKESCSSSDENEEEEEEENYEDGDDYIIDDFVVKDEEGDEENKSQQGEKLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINALDDSFLETLYDGTRQKSYAKDMLTSLDYLDNRFVQPRLESLVSRSRWKEQYKERVENYSNVTIHSKNPEDCSCQACGLHRRCSYSVHLSGKLYNTRTMETDDFMSQDKQVFTVGRICANRTRIYHTLKHFKFKLYQECCSIAKTEEVEDEQVKETVERIFNQSKERGWIEEKYGQLQEYLNCADYFQDEKFD", "length": 518, "header": "tr|A0A4X1TVQ8-1|A0A4X1TVQ8_PIG Isoform 1 of Coiled-coil domain containing 82 OS=Sus scrofa OX=9823 GN=CCDC82 PE=4 SV=1 CANONICAL=A0A4X1TVQ8-1" }, "isoforms": [ { "isoform_ac": "A0A287BC76-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVQ8/entry#A0A287BC76-1", "sequence": { "sequence": "MVHVRRCETRKSSKTQECEQKSRVDWRRTKRSSLSQLCDSDDELESDDEFDSDESVDNNASIDSDEELDNSKGLDSIKKPENERELKLIKVESEGNNSEHLINTSNTSVYEEEKNKTKHESINLSDHREHSSQEEDDLNIHTGQITEEDLEEEHIKRGKRKRISSVMYDSDESDDSDILVRKVGIKRPRRVVEDECSSVEMEQKNPEKALAAKKQEQLQKLKELSKQRSRQRRTSSRDFEDSEKESCSSSDENEEEEEEENYEDGDDYIIDDFVVKDEEGDEENKSQQGEKLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINALDDSFLETLYDGTRQKSYAKDMLTSLDYLDNRFVQPRLESLVSRSRWKEQYKERVENYSNVFTVGRICANRTRIYHTLKHFKFKLYQECCSIAKTEEVEDEQVKETVERIFNQSKERGWIEETSSCDLRVKKHLVPI", "length": 463, "header": "tr|A0A287BC76-1|A0A4X1TVQ8_PIG Computationally mapped isoform of Coiled-coil domain containing 82 OS=Sus scrofa OX=9823 GN=CCDC82 PE=4 SV=2 CANONICAL=A0A4X1TVQ8-1" }, "locus": { "chromosome": "9", "start_pos": 28401731, "end_pos": 28380834, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054856.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054856.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053953.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053953.2" } ] } }, { "isoform_ac": "A0A4X1TVQ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVQ8/entry#A0A4X1TVQ8-1", "sequence": { "sequence": "MVHVRRCETRKSSKTQECEQKSRVDWRRTKRSSLSQLCDSDDELESDDEFDSDESVDNNASIDSDEELDNSKGLDSIKKPENERELKLIKVESEGNNSEHLINTSNTSVYEEEKNKTKHESINLSDHREHSSQEEDDLNIHTGQITEEDLEEEHIKRGKRKRISSVMYDSDESDDSDILVRKVGIKRPRRVVEDECSSVEMEQKNPEKALAAKKQEQLQKLKELSKQRSRQRRTSSRDFEDSEKESCSSSDENEEEEEEENYEDGDDYIIDDFVVKDEEGDEENKSQQGEKLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINALDDSFLETLYDGTRQKSYAKDMLTSLDYLDNRFVQPRLESLVSRSRWKEQYKERVENYSNVTIHSKNPEDCSCQACGLHRRCSYSVHLSGKLYNTRTMETDDFMSQDKQVFTVGRICANRTRIYHTLKHFKFKLYQECCSIAKTEEVEDEQVKETVERIFNQSKERGWIEEKYGQLQEYLNCADYFQDEKFD", "length": 518, "header": "tr|A0A4X1TVQ8-1|A0A4X1TVQ8_PIG Isoform 1 of Coiled-coil domain containing 82 OS=Sus scrofa OX=9823 GN=CCDC82 PE=4 SV=1 CANONICAL=A0A4X1TVQ8-1" }, "locus": { "chromosome": "9", "start_pos": 28401731, "end_pos": 28377593, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037829.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037829.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053914.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053914.1" } ] } }, { "isoform_ac": "A0A8W4FB30-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVQ8/entry#A0A8W4FB30-1", "sequence": { "sequence": "MVHVRRCETRKSSKTQECEQKSRVDWRRTKRSSLSQLCDSDDELESDDEFDSDESVDNNASIDSDEELDNSKGLDSIKKPENERELKLIKVESEGNNSEHLINTSNTSVYEEEKNKTKHESINLSDQEHSSQEEDDLNIHTGQITEEDLEEEHIKRGKRKRISSVMYDSDESDDSDILVRKVGIKRPRRVVEDECSSVEMEQKNPEKALAAKKQEQLQKLKELSKQRSRQRRTSSRDFEDSEKESCSSSDENEEEEEEENYEDGDDYIIDDFVVKDEEGDEENKSQQGEKLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINALDDSFLETLYDGTRQKSYAKDMLTSLDYLDNRFVQPRLESLVSRSRWKEQYKERVENYSNVTIHSKNPEDCSCQACGLHRRCSYSVHLSGKLYNTRTMETDDFMSQDKQVFTVGRICANRTRIYHTLKHFKFKLYQECCSIAKTEEVEDEQVKETVERIFNQSKERGWIEETSSCDLRVKKHLVPI", "length": 511, "header": "tr|A0A8W4FB30-1|A0A4X1TVQ8_PIG Computationally mapped isoform of Coiled-coil domain containing 82 OS=Sus scrofa OX=9823 GN=CCDC82 PE=4 SV=1 CANONICAL=A0A4X1TVQ8-1" }, "locus": { "chromosome": "9", "start_pos": 28401731, "end_pos": 28380834, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096103.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096103.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076606.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076606.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FB30", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB30" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518852", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518852", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061I4R7-1", "protein_name": "Coiled-coil domain-containing protein 82 isoform X1", "gene_name": "Ccdc82", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVHVRRHETRKNSKTQVPEQKSRVDWRRTKRSISQLFDSDEELDSDEELEVDSDEELESGESVDSGEELDSSKNPGISEIPEKETEPKLIKVETEGSNSKPLTNTSNSSTDEEKMNKTEHDLPDDENRPSGQEKGDVNRHTKQSVEEDMEDEYIKPGKRKRLSSVMYDSDDSDDSDILVRKVSAKRPRRVVEDECSSLETEQETPEKSLAARKREHHQKLKELSERSRQRQRRNSGRNFEDSEKESCSSTDEDEDEDDYKYDENGDDYMIDDFVVQDEEGDEENKNQQGENLTTSQLKLVKQNSLYSFSDHYTHFETVVKALLINAFDESFLETLYAGTRKKSYAQDMLTSLHYLDNRFIQPRLESLVSRSRWKEQYKERVESYSTLSIHSKNPADCSCQACGLHRHCVYSVHLSGKLYNTRTMETDDFMSHDKQVFTVGRICADRTRIYHKLKHFKFKLYQECCSIAKTEEDGDEQVKETVGRVFSQSKESGWIRKKYDQLQDYLNSADYFQDEKFEL", "length": 519 }, "evidence": [ { "id": "A0A4X1TVQ8", "url": "https://omabrowser.org/oma/group/A0A4X1TVQ8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1MEZ4-1", "protein_name": "Coiled-coil domain containing 82", "gene_name": "CCDC82", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVHVRRHETRKNSKTQGHEQKSRVDWRRTKRNSLLQLCESGDELESDEGVDSNESVDSDEDPDSNKGPDCIEKPEDERELKLINVEGEGNSSKHLINTDNSSTYEEEKNKTKHGSIDLADHEKGPGQEEGDLNKHTGQITEEDLEEEHIKRGKRKRISSVMCDSDESDDSDILVRKVGVKRPRRVVEDECSSVEMEQKNPEKTSATRRREQLQKLEELSKQRSRQRHNSSRDFEDSEKKSSPSSDENDVEEEEEEDNDYEFDEDEIIDEDGDHYIIDGFVVQDEEGDEENKSQQGEQLTTSQRKSIKQNSFCDHYTHFERVVKALLINALDESFLGTLYDGTRQKSYAQDMLTSLYYLDNRFVQPRLENLVSRSRWKEKYKERVENYSSVDIQLKTSENCLCQACGLYRHCEYSVHLSGKLYDTRTMETDDFMSHDKQVFTVGRICAERTRIYHKLKHFKFELYQECCSIAKTEEVEDEEVKETVERIFSQSENSGWIKEKYGQLQEYLNLADYFKEEKFEF", "length": 522 }, "evidence": [ { "id": "A0A4X1TVQ8", "url": "https://omabrowser.org/oma/group/A0A4X1TVQ8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q66H73-1", "protein_name": "Coiled-coil domain-containing protein 82", "gene_name": "Ccdc82", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVHARRHETRKNSKTQVPEQKSRVDWRRTKRSVSQLFDSDEELDSDEEIGSDEDLDGGESIDSDGKLDISKDSGINEIPEKETELNLIKVESERSNSKCHMNTSSSSADEEEMNKTKHNDLPDDEAHPGQAEGHHNKLTGQVLEEDVEDECIKPGKRKRLSSVMYDSDESDDSDILVRKASAKHPRRVVEDECSSLEMERETPEKSPAARKREYHQKLQELCERSRQKQRHNSGRNCESSEKDSCSSTDEDEDDDDYGDAENEDDYMIDDFVVGDEEADEENKNQGENLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINAFDGSFLETLYAGKRKKSYAQDMLTSLHYLDDRFIQPRLESLVSRSRWREQYKERVESYSDLSIHWKSPENCGCQACGLHRYCKFSVRLSGKLYNTRTMETDDFMSRDKQVFIVGRICAERTKIYHKLKHFKFKLYQDCCSIAYTKEVGDEQVKDTVKRLFCQLKKSGWIRKKHGQLEEYLNSADYFQDEKFKL", "length": 516 }, "evidence": [ { "id": "A0A4X1TVQ8", "url": "https://omabrowser.org/oma/group/A0A4X1TVQ8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6PG04-1", "protein_name": "Coiled-coil domain-containing protein 82", "gene_name": "Ccdc82", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVHVRRHETRKNSKTQKPEQKSRVDWHRTKRSISQLFDSDEELDSNEELDSDEEHDSGESIDSDEELDISKKSDINELPEKETELKLIKVESQGSNSKHLTNTSNSSADEEQLKETKHNDLPDDEAHPGQAENHHNRHTGQILEEDMEDEYIKPGKRKRLSSVMYDSDESDDSDILIRKASAKHPRRVVEDECSSLEMEQETPEKSSAARKREYHQKLQELSERSRQRRRRNSGRNFEDSEKDSCSGTGEEDEDEDEDDYRYDEDGDDYMIDDFVVRNEEGDDENSNQQGENLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINAFDESFLETLYAGTRKKSYAKDMLTSLHYLDNRFIQPRLESLVSRSRWKEQYKERVESYSNLNILSKSPENCVCQACGLHRHCKFSVHLSGKLYNIRTMETDDFMSHDKQVFTVGRICVERTRIYHKLKHFKFKLYQDCCLIAKPEEVGDEQVKDTVKRVFNHSKERGWIRKKYDQLQNFLNSADYFQDEKF", "length": 518 }, "evidence": [ { "id": "A0A4X1TVQ8", "url": "https://omabrowser.org/oma/group/A0A4X1TVQ8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N4S0-1", "protein_name": "Coiled-coil domain-containing protein 82", "gene_name": "CCDC82", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MIHVRRHETRRNSKSHVPEQKSRVDWRRTKRSSISQLLDSDEELDSEEFDSDEELDSDESFENDEELDSNKGPDCNKTPGSERELNLSKIQSEGNDSKCLINSGNGSTYEEETNKIKHRNIDLQDQEKHLSQEDNDLNKQTGQIIEDDQEKHLSQEDNDLNKQTGQIIEDDLEEEDIKRGKRKRLSSVMCDSDESDDSDILVRKVGVKRPRRVVEDEGSSVEMEQKTPEKTLAAQKREKLQKLKELSKQRSRQRRSSGRDFEDSEKESCPSSDEVDEEEEEDNYESDEDGDDYIIDDFVVQDEEGDEENKNQQGEKLTTSQLKLVKQNSLYSFSDHYTHFERVVKALLINALDESFLGTLYDGTRQKSYAKDMLTSLHYLDNRFVQPRLESLVSRSRWKEQYKERVENYSNVSIHLKNPENCSCQACGLHRYCKYSVHLSGELYNTRTMQIDNFMSHDKQVFTVGRICASRTRIYHKLKHFKFKLYQECCTIAMTEEVEDEQVKETVERIFRRSKENGWIKEKYGQLEEYLNFADYFQEEKFEL", "length": 544 }, "evidence": [ { "id": "A0A4X1TVQ8", "url": "https://omabrowser.org/oma/group/A0A4X1TVQ8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TVQ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVQ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" }, { "start_pos": 123, "end_pos": 125, "annotation": "n_glycosylation_sequon" }, { "start_pos": 284, "end_pos": 286, "annotation": "n_glycosylation_sequon" }, { "start_pos": 383, "end_pos": 385, "annotation": "n_glycosylation_sequon" }, { "start_pos": 386, "end_pos": 388, "annotation": "n_glycosylation_sequon" }, { "start_pos": 445, "end_pos": 447, "annotation": "n_glycosylation_sequon" }, { "start_pos": 487, "end_pos": 489, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1TVQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVQ8" }, { "id": "PF13846", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13846" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Coiled-coil", "eco_id": "ECO_0000259", "start_pos": 103, "end_pos": 214, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1TVQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVQ8" }, { "id": "PF13926", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13926" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4211", "eco_id": "ECO_0000259", "start_pos": 272, "end_pos": 424, "start_aa": "Asp", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 106, "end_pos": 108 }, { "start_pos": 115, "end_pos": 117 }, { "start_pos": 123, "end_pos": 125 }, { "start_pos": 284, "end_pos": 286 }, { "start_pos": 383, "end_pos": 385 }, { "start_pos": 386, "end_pos": 388 }, { "start_pos": 445, "end_pos": 447 }, { "start_pos": 487, "end_pos": 489 }, { "start_pos": 59, "end_pos": 61 }, { "start_pos": 96, "end_pos": 98 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TSH6-1", "uniprot_ac": "A0A4X1TSH6", "uniprot_id": "A0A4X1TSH6_PIG", "mass": { "chemical_mass": 24240.0, "monoisotopic_mass": 24240.0 }, "refseq": { "ac": "NP_001230297", "name": "phosphopantothenoylcysteine decarboxylase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230297" }, "gene_names": [ { "name": "PPCDC", "type": "recommended", "evidence": [ { "id": "A0A4X1TSH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6" } ] }, { "name": "PPCDC", "type": "synonym", "evidence": [ { "id": "NP_001230297", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230297" } ] } ], "protein_names": [ { "name": "Phosphopantothenoylcysteine decarboxylase", "type": "recommended", "evidence": [ { "id": "A0A4X1TSH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6/entry#names_and_taxonomy" } ] }, { "name": "CoaC", "type": "synonym", "evidence": [ { "id": "A0A4X1TSH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6/entry#names_and_taxonomy" } ] }, { "name": "phosphopantothenoylcysteine decarboxylase", "type": "synonym", "evidence": [ { "id": "NP_001230297", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230297" } ] } ], "function": [ { "annotation": "Catalyzes the decarboxylation of the cysteine moiety of 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine and this reaction forms part of the biosynthesis of coenzyme A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TSH6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6#function" }, { "database": "UniProtKB", "id": "ARBA00056708", "url": "https://www.uniprot.org/uniprotkb/ARBA00056708#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TSH6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPCDC", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6", "locus": { "chromosome": "7", "start_pos": 58525143, "end_pos": 58549430, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027478", "url": "https://www.ensembl.org/id/ENSSSCG00000027478" } ] } } ], "crossref": [ { "id": "ENSSSCG00000027478", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027478", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152913", "url": "https://www.ncbi.nlm.nih.gov/gene/100152913", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003382", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003382", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036551", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036551", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152913", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152913", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KGLACGD", "url": "https://omabrowser.org/oma/group/KGLACGD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TSH6", "url": "https://www.orthodb.org/?gene=A0A4X1TSH6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14359", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14359", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14359:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14359:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02441", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02441", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-196783", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196783", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001230297", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230297", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BGM1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGM1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TSH6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TSH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TSI4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TSI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPSSSKLPGPEVTRPHMESRATCSAAAPLERQFRVLIGVTGSVAALKLPLLVSRLLDIPGLEVAVVTTERAKHFYNPQDVPVTLYSDADEWEMWKCRSDPVLHIDLRRWADLMLVAPLDANTLGKVASGICDNLLTCVIRAWDRSKPLLFCPAMNTAMWEHPLTEQQVCQLKAFGYVEIPCVAKKLVCGDQGLGAMAEVGTIVDKVKEVLFQHGGFQQS", "length": 220, "header": "tr|A0A4X1TSH6-1|A0A4X1TSH6_PIG Isoform 1 of Phosphopantothenoylcysteine decarboxylase OS=Sus scrofa OX=9823 GN=PPCDC PE=3 SV=1 CANONICAL=A0A4X1TSH6-1" }, "isoforms": [ { "isoform_ac": "A0A287BGM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6/entry#A0A287BGM1-1", "sequence": { "sequence": "MEPSSSKLPGPEVTRPHMESRATCSAAAPLERQFRVLIGVTGSVAALKLPLLVSRLLDIPGMWKCRSDPVLHIDLRRWADLMLVAPLDANTLGKVASGICDNLLTCVIRAWDRSKPLLFCPAMNTAMWEHPLTEQQVCQLKAFGYVEIPCVAKKLVCGDQGLGAMAEVGTIVDKVKEVLFQHGGFQQS", "length": 188, "header": "tr|A0A287BGM1-1|A0A4X1TSH6_PIG Computationally mapped isoform of Phosphopantothenoylcysteine decarboxylase OS=Sus scrofa OX=9823 GN=PPCDC PE=3 SV=3 CANONICAL=A0A4X1TSH6-1" }, "locus": { "chromosome": "7", "start_pos": 58545101, "end_pos": 58525975, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036738.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036738.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055736.3", "url": "https://www.ensembl.org/id/ENSSSCP00000055736.3" } ] } }, { "isoform_ac": "A0A4X1TSH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6/entry#A0A4X1TSH6-1", "sequence": { "sequence": "MEPSSSKLPGPEVTRPHMESRATCSAAAPLERQFRVLIGVTGSVAALKLPLLVSRLLDIPGLEVAVVTTERAKHFYNPQDVPVTLYSDADEWEMWKCRSDPVLHIDLRRWADLMLVAPLDANTLGKVASGICDNLLTCVIRAWDRSKPLLFCPAMNTAMWEHPLTEQQVCQLKAFGYVEIPCVAKKLVCGDQGLGAMAEVGTIVDKVKEVLFQHGGFQQS", "length": 220, "header": "tr|A0A4X1TSH6-1|A0A4X1TSH6_PIG Isoform 1 of Phosphopantothenoylcysteine decarboxylase OS=Sus scrofa OX=9823 GN=PPCDC PE=3 SV=1 CANONICAL=A0A4X1TSH6-1" }, "locus": { "chromosome": "7", "start_pos": 58545101, "end_pos": 58525975, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038654.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038654.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054089.1", "url": "https://www.ensembl.org/id/ENSSSCP00000054089.1" } ] } }, { "isoform_ac": "A0A4X1TSI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6/entry#A0A4X1TSI4-1", "sequence": { "sequence": "MESRATCSAAAPLERQFRVLIGVTGSVAALKLPLLVSRLLDIPGLEVAVVTTERAKHFYNPQDVPVTLYSDADEWETCVIRAWDRSKPLLFCPAMNTAMWEHPLTEQQVCQLKAFGYVEIPCVAKKLVCGDQGLGAMAEVGTIVDKVKEVLFQHGGFQQS", "length": 160, "header": "tr|A0A4X1TSI4-1|A0A4X1TSI4_PIG Computationally mapped isoform of Phosphopantothenoylcysteine decarboxylase OS=Sus scrofa OX=9823 GN=PPCDC PE=3 SV=1 CANONICAL=A0A4X1TSH6-1" }, "locus": { "chromosome": "7", "start_pos": 58545050, "end_pos": 58525975, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026577.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026577.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022843.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022843.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BGM1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGM1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152913", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152913", "resource": "KEGG Pathway" }, { "id": "R-SSC-196783", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196783", "resource": "Reactome", "description": "Coenzyme A biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A6H7-1", "protein_name": "Phosphopantothenoylcysteine decarboxylase", "gene_name": "Ppcdc", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTTPRSHRTKLRLPECHAITSFSLESFRAGKALDTAILGGILQLILLSSQKATRSRMEPEAPCPASIPSVERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVTVVTTERAKHFYSPQDVPVTLYSDADEWEMWKRRSDPVLHIDLRRWADLMVVAPLDANTLGKVASGICDNLLTCVIRAWDLNKPLLFCPAMNTAMWEHPLTAQQVGQLKAFGYVEIPCVSKKLVCGDQGLGAMAEVEIIVAKVKDVLFQHGGIQQS", "length": 261 }, "evidence": [ { "id": "A0A4X1TSH6", "url": "https://omabrowser.org/oma/group/A0A4X1TSH6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54Y51-1", "protein_name": "Putative phosphopantothenoylcysteine decarboxylase", "gene_name": "ppcdc", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTITINNYNNDKKNLILGLTGSVATIKAKLLVEQLIQHFNLIVIPTETSLKFLSDQDFEFISSKCKIYKDKDEWENVDLLKRSALHIDLRNWANSILISPCSANTLGKISNGLCDNLLTSLIRAWDYKNKSMILAPAMNTMMWENPFTFKHIETLKSISPNVFIIDPIEKKLFCGDIGMGAMEQVPKIVDFTINNLK", "length": 197 }, "evidence": [ { "id": "A0A4X1TSH6", "url": "https://omabrowser.org/oma/group/A0A4X1TSH6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BZB2-1", "protein_name": "Phosphopantothenoylcysteine decarboxylase", "gene_name": "Ppcdc", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPKAPCPAAVPSEERKFRVLVGVTGSVAALKLPLLVSKLLDVPGLEVTVVTTERAKHFYSPQDVPVTLYSDADEWEMWKRRSDPVLHIDLRRWADLMLVAPLDANTLGKVASGICDNLLTCVIRAWDLNKPLLFCPAMNTAMWEHPLTAQQVAQLKAFGYVEIPCVSKKLVCGDQGLGAMAEVETIVAKVQAVLSQHGSIQQS", "length": 204 }, "evidence": [ { "id": "A0A4X1TSH6", "url": "https://omabrowser.org/oma/group/A0A4X1TSH6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96CD2-1", "protein_name": "Phosphopantothenoylcysteine decarboxylase", "gene_name": "PPCDC", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDIPVTLYSDADEWEIWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVKEVLFQHSGFQQS", "length": 204 }, "evidence": [ { "id": "A0A4X1TSH6", "url": "https://omabrowser.org/oma/group/A0A4X1TSH6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9SWE5-1", "protein_name": "Phosphopantothenoylcysteine decarboxylase", "gene_name": "HAL3A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MENGKRDRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEPSLIYSTVRLFWESQAHQQTGGTS", "length": 209 }, "evidence": [ { "id": "A0A4X1TSH6", "url": "https://omabrowser.org/oma/group/A0A4X1TSH6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "catalytic activity", "id": "GO:0003824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003824", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TSH6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TSH6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6" } ], "pmid": "" }, { "name": "FMN binding", "id": "GO:0010181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010181", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TSH6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6" } ], "pmid": "" }, { "name": "phosphopantothenoylcysteine decarboxylase activity", "id": "GO:0004633", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004633", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TSH6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "coenzyme A biosynthetic process", "id": "GO:0015937", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015937", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TSH6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "phosphopantothenoylcysteine decarboxylase complex", "id": "GO:0071513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071513", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TSH6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1TSH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TSH6" }, { "id": "PF02441", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02441" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Flavoprotein", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 210, "start_aa": "Arg", "end_aa": "Val", 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"https://www.uniprot.org/uniprotkb/A0A4X1SV82/entry#A0A287BPE7-1", "sequence": { "sequence": "MADEALFLLLHNEMVSGVYKSAEQGEVGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL", "length": 96, "header": "tr|A0A287BPE7-1|A0A4X1SV82_PIG Computationally mapped isoform of Trafficking protein particle complex subunit 6B OS=Sus scrofa OX=9823 GN=TRAPPC6B PE=1 SV=1 CANONICAL=A0A4X1SV82-1" }, "locus": { "chromosome": "1", "start_pos": 169722466, "end_pos": 169712073, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062611.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062611.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058491.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058491.1" } ] } }, { "isoform_ac": "A0A4X1SV82-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SV82/entry#A0A4X1SV82-1", "sequence": { "sequence": "MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL", "length": 130, "header": "tr|A0A4X1SV82-1|A0A4X1SV82_PIG Isoform 1 of Trafficking protein particle complex subunit 6B OS=Sus scrofa OX=9823 GN=TRAPPC6B PE=1 SV=1 CANONICAL=A0A4X1SV82-1" }, "locus": { "chromosome": "1", "start_pos": 169722466, "end_pos": 169712073, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086134.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086134.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062601.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062601.1" } ] } }, { "isoform_ac": "A0A4X1SVA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SV82/entry#A0A4X1SVA0-1", "sequence": { "sequence": "MADEALFLLLHNEMVSGVYKSAEQGEVVSAATRPSRFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL", "length": 144, "header": "tr|A0A4X1SVA0-1|A0A4X1SVA0_PIG Computationally mapped isoform of Trafficking protein particle complex subunit 6B OS=Sus scrofa OX=9823 GN=TRAPPC6B PE=1 SV=1 CANONICAL=A0A4X1SV82-1" }, "locus": { "chromosome": "1", "start_pos": 169722466, "end_pos": 169712073, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005500.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005500.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005363.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005363.3" } ] } }, { "isoform_ac": "A0A4X1SVM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SV82/entry#A0A4X1SVM0-1", "sequence": { "sequence": "MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL", "length": 158, "header": "tr|A0A4X1SVM0-1|A0A4X1SVM0_PIG Computationally mapped isoform of Trafficking protein particle complex subunit 6B OS=Sus scrofa OX=9823 GN=TRAPPC6B PE=1 SV=1 CANONICAL=A0A4X1SV82-1" }, "locus": { "chromosome": "1", "start_pos": 169722466, "end_pos": 169712073, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060435.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060435.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048534.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048534.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BPE7", "url": "https://www.uniprot.org/uniprotkb/A0A287BPE7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525849", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525849", "resource": "KEGG Pathway" }, { "id": "R-SSC-204005", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "resource": "Reactome", "description": "COPII-mediated vesicle transport" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MCS4-1", "protein_name": "Trafficking protein particle complex subunit 6B", "gene_name": "Trappc6b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQLSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL", "length": 158 }, "evidence": [ { "id": "A0A4X1SV82", "url": "https://omabrowser.org/oma/group/A0A4X1SV82/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZES2-1", "protein_name": "Trafficking protein particle complex subunit 6B", "gene_name": "Trappc6b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL", "length": 158 }, "evidence": [ { "id": "A0A4X1SV82", "url": "https://omabrowser.org/oma/group/A0A4X1SV82/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1C3X0-1", "protein_name": "Trafficking protein particle complex subunit 6B", "gene_name": "TRAPPC6A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MADEALFLLLHNEMVAGLYRAAEQGEGENGRCTTKLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHAPKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKM", "length": 158 }, "evidence": [ { "id": "A0A4X1SV82", "url": "https://omabrowser.org/oma/group/A0A4X1SV82/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q32L78-1", "protein_name": "Trafficking protein particle complex subunit 6B", "gene_name": "TRAPPC6B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL", "length": 158 }, "evidence": [ { "id": "A0A4X1SV82", "url": "https://omabrowser.org/oma/group/A0A4X1SV82/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { 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KCTD20 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001929578", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929578" } ] }, { "name": "Potassium channel tetramerization domain containing 20", "type": "synonym", "evidence": [ { "id": "A0A4X1STM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STM3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STM3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCTD20", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STM3", "locus": { "chromosome": "7", "start_pos": 32195072, "end_pos": 32146106, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001562", "url": "https://www.ensembl.org/id/ENSSSCG00000001562" } ] } } ], "crossref": [ { "id": "A0A4X1STM3", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1STM3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001562", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001562", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18386", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18386", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154621", "url": "https://www.ncbi.nlm.nih.gov/gene/100154621", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039886", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039886", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154621", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154621", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WNHEPFI", "url": "https://omabrowser.org/oma/group/WNHEPFI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A481D8Q7", "url": "https://www.orthodb.org/?gene=A0A481D8Q7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1STM3", "url": "https://www.orthodb.org/?gene=A0A4X1STM3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21637", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21637", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21637:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21637:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001929578", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929578", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A481D8Q7", "url": "https://www.uniprot.org/uniprotkb/A0A481D8Q7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481D8Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A481D8Q7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1STF0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1STF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STF0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1STM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1STM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RY94", "url": "https://www.uniprot.org/uniprotkb/F1RY94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RY94-1", "url": "https://www.uniprot.org/uniprotkb/F1RY94-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNAHRSTESDRSLRQEASCLMDEASAVAPEKEANILASSGLQTLAYPLGPRNDDLSLDYASQPANLQFPHMMPLPEDIKGSCFQSGNKRNHDPFIAPERFGNSTVGFGSNIHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRLNAPLSQMVSNDFQD", "length": 419, "header": "tr|A0A4X1STM3-1|A0A4X1STM3_PIG Isoform 1 of Potassium channel tetramerization domain containing 20 OS=Sus scrofa OX=9823 GN=KCTD20 PE=4 SV=1 CANONICAL=A0A4X1STM3-1" }, "isoforms": [ { "isoform_ac": "A0A481D8Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STM3/entry#A0A481D8Q7-1", "sequence": { "sequence": "MNAHRSTESDRSLRQEASCLMDEASAVAPEKEANILASSGLQTLAYPLGPRNDDLSLDYASQPANLQFPHMMPLPEDIKGSCFQSGNKRNHDPFIAPERFGNSTVGFGSNIHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRLNAPLSQMVSNDFQD", "length": 353, "header": "tr|A0A481D8Q7-1|A0A4X1STM3_PIG Computationally mapped isoform of Potassium channel tetramerization domain containing 20 OS=Sus scrofa OX=9823 GN=KCTD20 PE=4 SV=1 CANONICAL=A0A4X1STM3-1" }, "locus": { "chromosome": "7", "start_pos": 32191755, "end_pos": 32177814, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094952.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094952.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075703.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075703.1" } ] } }, { "isoform_ac": "A0A4X1STF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STM3/entry#A0A4X1STF0-1", "sequence": { "sequence": "MNAHRSTESDRSLRQEASCLMDEASAVAPEKEANILASSGLQTLAYPLGPRNDGALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRLNAPLSQMVSNDFQD", "length": 253, "header": "tr|A0A4X1STF0-1|A0A4X1STF0_PIG Computationally mapped isoform of Potassium channel tetramerization domain containing 20 OS=Sus scrofa OX=9823 GN=KCTD20 PE=4 SV=1 CANONICAL=A0A4X1STM3-1" }, "locus": { "chromosome": "7", "start_pos": 32191755, "end_pos": 32177814, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073841.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073841.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063579.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063579.1" } ] } }, { "isoform_ac": "A0A4X1STM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STM3/entry#A0A4X1STM3-1", "sequence": { "sequence": "MNAHRSTESDRSLRQEASCLMDEASAVAPEKEANILASSGLQTLAYPLGPRNDDLSLDYASQPANLQFPHMMPLPEDIKGSCFQSGNKRNHDPFIAPERFGNSTVGFGSNIHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRLNAPLSQMVSNDFQD", "length": 419, "header": "tr|A0A4X1STM3-1|A0A4X1STM3_PIG Isoform 1 of Potassium channel tetramerization domain containing 20 OS=Sus scrofa OX=9823 GN=KCTD20 PE=4 SV=1 CANONICAL=A0A4X1STM3-1" }, "locus": { "chromosome": "7", "start_pos": 32191755, "end_pos": 32177814, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051077.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051077.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059091.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059091.2" } ] } }, { "isoform_ac": "F1RY94-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STM3/entry#F1RY94-1", "sequence": { "sequence": "MFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRLNAPLSQMVSNDFQD", "length": 274, "header": "tr|F1RY94-1|A0A4X1STM3_PIG Computationally mapped isoform of Potassium channel tetramerization domain containing 20 OS=Sus scrofa OX=9823 GN=KCTD20 PE=4 SV=3 CANONICAL=A0A4X1STM3-1" }, "locus": { "chromosome": "7", "start_pos": 32191755, "end_pos": 32185743, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001741.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001741.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001697.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001697.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RY94", "url": "https://www.uniprot.org/uniprotkb/F1RY94" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154621", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154621", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0U1RRY2-1", "protein_name": "Potassium channel tetramerization domain containing 20", "gene_name": "Kctd20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNVHQGSDGDWLLQPELSFLGDETLAATQEKESSSLVSSGLPSLTYPLAARNEDFALDSAPQPAASLQHPHIMPLPEDNKGSCFQSGSRRSREPFLVPERSGSGGLGFGGSSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEIMMHHPPQVDELDRLNAPLAQMAPNDFQD", "length": 418 }, "evidence": [ { "id": "A0A4X1STM3", "url": "https://omabrowser.org/oma/group/A0A4X1STM3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A1D5PY88-1", "protein_name": "Potassium channel tetramerization domain containing 20", "gene_name": "KCTD20", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MNVNCAGGRRNLESTCSVENGTVAVRETEEGNVVLGGHSPSAGLRNEGLDSDYRHTACPASPQFSSMLSASEDTHSCHFQDGNKRQTEYFNTQDRHAVSSSINSQTVAPEKVTLVVDGTRFAVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISSAVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIKCQDLSALLHELSNDGAHKQFDSYLEELILPIMVDSARKGERECHIVVLTDEDTVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIENRDVAKAVLKERGLKNIRIGIEGYPTCKEKVKRRPGGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVTVGDDVSEDHEVIMHHPPQVDELDRLNAPFSQMAVNDLPD", "length": 412 }, "evidence": [ { "id": "A0A4X1STM3", "url": "https://omabrowser.org/oma/group/A0A4X1STM3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HKB9-1", "protein_name": "BTB/POZ domain-containing protein KCTD20 isoform X1", "gene_name": "Kctd20", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSVHQGSDGDRVLQPELSCLGDETLAATQEKERKQQQLGVPWTSYSHSPLATRSEDFALEYASQPASLQHPPVMPLPEDSKGSCFQSGSKRSHEPFIVSERFGNSGVGFGGSPHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISAAVFRTVLDYYKTGVINCPDGISIPDLRDTCDYLCINFDSNTIRCQDLSALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIENRDVAKTLLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVATGEDVLEDQEIIMHHPPQVDELDRLNAPLSQMAPNDFQD", "length": 421 }, "evidence": [ { "id": "A0A4X1STM3", "url": "https://omabrowser.org/oma/group/A0A4X1STM3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q7Z5Y7-1", "protein_name": "BTB/POZ domain-containing protein KCTD20", "gene_name": "KCTD20", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNVHRGSDSDRLLRQEASCLVDDTLAVAQEKEANSLASSGPHNLTYPLGPRNEDLSLDYASQPANLQFPHIMPLAEDIKGSCFQSGNKRNHEPFIAPERFGNSSVGFGSNSHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGDDVLEDQEILMHHPPQVDELDRLNAPLSQMASNDFQD", "length": 419 }, "evidence": [ { "id": "A0A4X1STM3", "url": "https://omabrowser.org/oma/group/A0A4X1STM3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CDD8-1", "protein_name": "BTB/POZ domain-containing protein KCTD20", "gene_name": "Kctd20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVHQGSDGDWSLQPELSCLGDEALAATQEKEGSSLVSSGLHSVTYPLAARSEDLALDYASQPASLPHPHIMPLPEDNKGSCFQSGSKRSHEPFIVPERFGNSGLGFGGGAHSQAPEKVTLLVDGTRFVVNPQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYVIAEGISATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFDFNTIRCQDLSALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMGEEYSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEIIMHHPPQVDELDRLNAPLSQMAPNDFQD", "length": 419 }, "evidence": [ { "id": "A0A4X1STM3", "url": "https://omabrowser.org/oma/group/A0A4X1STM3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STM3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STM3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of phosphorylation", "id": "GO:0042327", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042327", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STM3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STM3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1STM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STM3" }, { "id": "SM00225", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 117, "end_pos": 222, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 154, "end_pos": 156 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"https://www.uniprot.org/uniprotkb/A0A4X1SLG9/entry#names_and_taxonomy" } ] }, { "name": "carbonic anhydrase-related protein", "type": "synonym", "evidence": [ { "id": "XP_020944998", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944998" } ] } ], "function": [ { "annotation": "Does not have a carbonic anhydrase catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SLG9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLG9#function" }, { "database": "UniProtKB", "id": "ARBA00060169", "url": "https://www.uniprot.org/uniprotkb/ARBA00060169#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SLG9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLG9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CA8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLG9", "locus": { "chromosome": "4", "start_pos": 73141989, "end_pos": 73047847, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006233", "url": "https://www.ensembl.org/id/ENSSSCG00000006233" } ] } } ], "crossref": [ { "id": "A0A4X1SLG9", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SLG9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd03120", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03120", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157869", "url": "https://www.ncbi.nlm.nih.gov/gene/100157869", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001148", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001148", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018338", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018338", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023561", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023561", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036398", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036398", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157869", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157869", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CTEGIVW", "url": "https://omabrowser.org/oma/group/CTEGIVW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SLG9", "url": "https://www.orthodb.org/?gene=A0A4X1SLG9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18952", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18952", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18952:SF104", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18952:SF104", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00194", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00194", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020944998", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944998", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "10748", "url": "https://www.rhea-db.org/rhea/10748", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1SKE8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SKE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SKE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SKE8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SLG9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SLG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLG9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADLSFIEDSVAFPEKEEDEEEEEEEGVEWGYEEGVEWGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTNDGHTIQVILKSKSVLSGGPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLFGSIDEAVGKPHGIAIIALFVQIGKEHVGLKAVTEILQDIQYKGKSKTIPCFNPNTLLPDPLLRDYWVYEGSLTIPPCSEGVTWILFRYPLTISQLQIEEFRRLRTHVKGAELVEGCDGILGDNFRPTQPLSDRVIRAAFQ", "length": 291, "header": "tr|A0A4X1SLG9-1|A0A4X1SLG9_PIG Isoform 1 of Carbonic anhydrase-related protein OS=Sus scrofa OX=9823 GN=CA8 PE=1 SV=1 CANONICAL=A0A4X1SLG9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SKE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLG9/entry#A0A4X1SKE8-1", "sequence": { "sequence": "MADLSFIEDSVAFPEKEEDEEEEEEEGVEWGYEEGVEWGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTNDGHTIQVILKSKSVLSGGPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMEIGKEHVGLKAVTEILQDIQYKGKSKTIPCFNPNTLLPDPLLRDYWVYEGSLTIPPCSEGVTWILFRYPLTISQLQIEEFRRLRTHVKGAELVEGCDGILGDNFRPTQPLSDRVIRAAFQ", "length": 259, "header": "tr|A0A4X1SKE8-1|A0A4X1SLG9_PIG Computationally mapped isoform of Carbonic anhydrase-related protein OS=Sus scrofa OX=9823 GN=CA8 PE=1 SV=1 CANONICAL=A0A4X1SLG9-1" }, "locus": { "chromosome": "4", "start_pos": 73120491, "end_pos": 73048133, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006830.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006830.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006645.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006645.3" } ] } }, { "isoform_ac": "A0A4X1SLG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLG9/entry#A0A4X1SLG9-1", "sequence": { "sequence": "MADLSFIEDSVAFPEKEEDEEEEEEEGVEWGYEEGVEWGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTNDGHTIQVILKSKSVLSGGPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLFGSIDEAVGKPHGIAIIALFVQIGKEHVGLKAVTEILQDIQYKGKSKTIPCFNPNTLLPDPLLRDYWVYEGSLTIPPCSEGVTWILFRYPLTISQLQIEEFRRLRTHVKGAELVEGCDGILGDNFRPTQPLSDRVIRAAFQ", "length": 291, "header": "tr|A0A4X1SLG9-1|A0A4X1SLG9_PIG Isoform 1 of Carbonic anhydrase-related protein OS=Sus scrofa OX=9823 GN=CA8 PE=1 SV=1 CANONICAL=A0A4X1SLG9-1" }, "locus": { "chromosome": "4", "start_pos": 73120491, "end_pos": 73048133, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038512.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038512.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055042.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055042.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SKE8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SKE8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157869", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157869", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PPM5-1", "protein_name": "Carbonic anhydrase-related protein", "gene_name": "CA8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MADRSLIEGAEPFPRREEAPEWGYEEGVEWGLIFPDANGEYQSPINLNSREAKYDPSLLEVRLSPNYVVCRDCEVINDGHSIQIALKSKSVLIGGPLPRGHEFELHDVRFHWGRENQRGSEHTVNFKAFPMELHLMHWNSTLYSSIDEAVGKKHGIAIIALFVQIGKEHVGLKAVTEILQDIQYKGKSKTIPCFNPNSLLPDPLLRDYWVYEGSLTIPPCSEGVTWILFRYPLTVSQVQIEEFRRLRTHVKGAELLEGCDGILGDNFRPTQPLSDRVIRAAFQ", "length": 283 }, "evidence": [ { "id": "A0A4X1SLG9", "url": "https://omabrowser.org/oma/group/A0A4X1SLG9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P28651-1", "protein_name": "Carbonic anhydrase-related protein", "gene_name": "Ca8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADLSFIEDAVAFPEKEEDEEEEEEEGVEWGYEEGVEWGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTNDGHTIQVILKSKSVLSGGPLPQGQEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLFGSIDEAVGKPHGIAIIALFVQIGKEHVGLKAVTEILQDIQYKGKSKTIPCFNPNTLLPDPLLRDYWVYEGSLTIPPCSEGVTWILFRYPLTISQMQIEEFRRLRTHVKGAELVEGCDGILGDNFRPTQPLSDRVIRAAFQ", "length": 291 }, "evidence": [ { "id": "A0A4X1SLG9", "url": "https://omabrowser.org/oma/group/A0A4X1SLG9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P35219-1", "protein_name": "Carbonic anhydrase-related protein", "gene_name": "CA8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADLSFIEDTVAFPEKEEDEEEEEEGVEWGYEEGVEWGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTNDGHTIQVILKSKSVLSGGPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLFGSIDEAVGKPHGIAIIALFVQIGKEHVGLKAVTEILQDIQYKGKSKTIPCFNPNTLLPDPLLRDYWVYEGSLTIPPCSEGVTWILFRYPLTISQLQIEEFRRLRTHVKGAELVEGCDGILGDNFRPTQPLSDRVIRAAFQ", "length": 290 }, "evidence": [ { "id": "A0A4X1SLG9", "url": "https://omabrowser.org/oma/group/A0A4X1SLG9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5PPN4-1", "protein_name": "Carbonic anhydrase-related protein", "gene_name": "Ca8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLSFIEDAVAFPEKEEDEEEEEEGVEWGYEEGVEWGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTNDGHTIQVILKSKSVLSGGPLPQGQEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLFGSIDEAVGKPHGIVIIALFVQIGKEHVGLKAVTEILQDIQYKGKSKTIPCFNPNTLLPDPLLRDYWVYEGSLTIPPCSEGVTWILFRYPLTISQLQIEEFRRLRTHVKGAELVEGCDGILGDNFRPTQPLSDRVIRAAFQ", "length": 290 }, "evidence": [ { "id": "A0A4X1SLG9", "url": "https://omabrowser.org/oma/group/A0A4X1SLG9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": 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"MEGDPVGCLRPLEVPAAEEADPQVASWSGDSGNVSQSHSSASGPWEDEGPELGAPGRDLPLLRRAAAGYATCLLPSAGARPEVEALDASLEDLLTRVDEFVGMLDMLRGDSSHVVSEGVPRIYAKATEMRRVYSKIDRLEAFVGMIGASVARMEEHVARAEAELGTFPSTFRKLLHTINVPSFFNKAPSSKSQLTGYEPPVVFRTEDHFPCCSERPQV", "length": 218, "header": "tr|A0A4X1SLB7-1|A0A4X1SLB7_PIG Isoform 1 of Biosis of lysosomal organelles complex 1 subunit 4 OS=Sus scrofa OX=9823 GN=BLOC1S4 PE=4 SV=1 CANONICAL=A0A4X1SLB7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SLB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB7/entry#A0A4X1SLB7-1", "sequence": { "sequence": "MEGDPVGCLRPLEVPAAEEADPQVASWSGDSGNVSQSHSSASGPWEDEGPELGAPGRDLPLLRRAAAGYATCLLPSAGARPEVEALDASLEDLLTRVDEFVGMLDMLRGDSSHVVSEGVPRIYAKATEMRRVYSKIDRLEAFVGMIGASVARMEEHVARAEAELGTFPSTFRKLLHTINVPSFFNKAPSSKSQLTGYEPPVVFRTEDHFPCCSERPQV", "length": 218, "header": "tr|A0A4X1SLB7-1|A0A4X1SLB7_PIG Isoform 1 of Biosis of lysosomal organelles complex 1 subunit 4 OS=Sus scrofa OX=9823 GN=BLOC1S4 PE=4 SV=1 CANONICAL=A0A4X1SLB7-1" }, "locus": { "chromosome": "8", "start_pos": 4095750, "end_pos": 4095097, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092782.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092782.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078973.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078973.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SLB7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100621576", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621576", "resource": "KEGG Pathway" }, { "id": "R-SSC-432722", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432722", "resource": "Reactome", "description": "Golgi Associated Vesicle Biogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XQL1-1", "protein_name": "Biosis of lysosomal organelles complex 1 subunit 4", "gene_name": "BLOC1S4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAPPDGRPGGGMAAAGVGAEAAVGRSGGDSGNVSQSHSNASGLGGLEDEEGDALDASLSATAAAYSAYLLVERSAFSEQVESLEKSLEELLTRVDEFVGMLDMIRSDSSQVVNESIPEIYTKATEMRQIYRRIDKLEAFVKMIANHVAGMEERVVKAESDLGAFPSTFKKILHTISIPSFRNKSSSSRQQTAYEPPVLFKTEDYFPCPNEAPY", "length": 214 }, "evidence": [ { "id": "A0A4X1SLB7", "url": "https://omabrowser.org/oma/group/A0A4X1SLB7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3V6R9-1", "protein_name": "Biogenesis of lysosomal organelles complex 1 subunit 4", "gene_name": "Bloc1s4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEEGPAIGTLSREVSTEEAEPLVAAWSGDSGHVSQSHSSASGPWEDDGTEDAPGRDLPLLRRAALGYASSLLPATGPRPEVEALDASLEDLLAKVDEFVGMLDMIRGDSSHVVSEGVPRIHAKAAEMRRIYGRIDKLEAFVRMIGSSVARMEEQVTKAEAELGTFPRAFRRLLHTISVPALFKSAPTAPQRAVYEPPVLFRTEDHFPGSGDRPQL", "length": 215 }, "evidence": [ { "id": "A0A4X1SLB7", "url": "https://omabrowser.org/oma/group/A0A4X1SLB7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8VED2-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 4", "gene_name": "Bloc1s4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEGPAVGTLSREVSTEEAEPLGAAWSGDSGHVSQSHSSASGPWDDDGPEDAPGRDLPLLRRAASGYASSLLPSAGPRPEVEALDASLEELLAKVDEFVGMLDMIRGDSSHVVGEGVPRIHAKAAEMRRIYGRIDKLEAFVRMIGSSVARMEEQVAKAEAELGTFPRAFRRLLHTISVPALFRSAPSGPQRAAYEPPVLFRTEDHFPGCGDRPQL", "length": 215 }, "evidence": [ { "id": "A0A4X1SLB7", "url": "https://omabrowser.org/oma/group/A0A4X1SLB7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NUP1-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 4", "gene_name": "BLOC1S4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEGSFSDGGALPEGLAEEAEPQGAAWSGDSGTVSQSHSSASGPWEDEGAEDGAPGRDLPLLRRAAAGYAACLLPGAGARPEVEALDASLEDLLTRVDEFVGMLDMLRGDSSHVVSEGVPRIHAKAAEMRRIYSRIDRLEAFVRMVGGRVARMEEQVTKAEAELGTFPRAFKKLLHTMNVPSLFSKSAPSRPQQAGYEAPVLFRTEDYFPCCSERPQL", "length": 217 }, "evidence": [ { "id": "A0A4X1SLB7", "url": "https://omabrowser.org/oma/group/A0A4X1SLB7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "anterograde synaptic vesicle transport", "id": "GO:0048490", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048490", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SLB7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "axon cytoplasm", "id": "GO:1904115", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904115", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SLB7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB7" } ], "pmid": "" }, { "name": "BLOC-1 complex", "id": "GO:0031083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031083", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SLB7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SLB7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 33, "end_pos": 35 } ] }, "class_list": [], 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"total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1SMP0-1", "uniprot_ac": "A0A4X1SMP0", "uniprot_id": "A0A4X1SMP0_PIG", "mass": { "chemical_mass": 53548.0, "monoisotopic_mass": 53548.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "TBC1 domain family member 14", "type": "synonym", "evidence": [ { "id": "A0A4X1SMP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SMP0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SMP0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SMP0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SMP0", "locus": {} } ], "crossref": [ { "id": "A0A4X1SMP0", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SMP0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027349", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027349", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8854214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1SMP0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SMP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SMP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SMP0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0T0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0T0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0T0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LE86", "url": "https://www.uniprot.org/uniprotkb/I3LE86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LE86-1", "url": "https://www.uniprot.org/uniprotkb/I3LE86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "AMAVSPALLLMDRNLLARKQNARLDKQNDLGWKLFGKVPLRENAQKDSKKMQKECEDKAGRPSRPPSPKQNVRKNLDFEPLSTTALILEDRPANLPAKPAEEAQKHRQQYEEMVVQAKKRELKEAQRRKKQLEERCKLEESIGNAVLTWNNEILPNWETMWCSRKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSFSTGGSEVESEDVGFSAADREASLELIKLDISRTFPNLCIFQQGGPYHDTLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHVAQFLTRLPEDLPAEEFFASIAAVQMQSRNKKWAQVLTALQRDSRELEKGSPSLRH", "length": 465, "header": "tr|A0A4X1SMP0-1|A0A4X1SMP0_PIG Isoform 1 of TBC1 domain family member 14 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1SMP0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SMP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SMP0/entry#A0A4X1SMP0-1", "sequence": { "sequence": "AMAVSPALLLMDRNLLARKQNARLDKQNDLGWKLFGKVPLRENAQKDSKKMQKECEDKAGRPSRPPSPKQNVRKNLDFEPLSTTALILEDRPANLPAKPAEEAQKHRQQYEEMVVQAKKRELKEAQRRKKQLEERCKLEESIGNAVLTWNNEILPNWETMWCSRKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSFSTGGSEVESEDVGFSAADREASLELIKLDISRTFPNLCIFQQGGPYHDTLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHVAQFLTRLPEDLPAEEFFASIAAVQMQSRNKKWAQVLTALQRDSRELEKGSPSLRH", "length": 465, "header": "tr|A0A4X1SMP0-1|A0A4X1SMP0_PIG Isoform 1 of TBC1 domain family member 14 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1SMP0-1" }, "locus": { "chromosome": "8", "start_pos": 3896590, "end_pos": 3835678, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061952.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061952.3" }, { "database": "Ensembl Peptide", "id": 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}, "evidence": [ { "id": "A0A4X1SNG6", "url": "https://omabrowser.org/oma/group/A0A4X1SNG6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q9WV35-1", "protein_name": "C->U-editing enzyme APOBEC-2", "gene_name": "Apobec2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAQKEEAAEAAAPASQNGDDLENLEDPEKLKELIDLPPFEIVTGVRLPVNFFKFQFRNVEYSSGRNKTFLCYVVEVQSKGGQAQATQGYLEDEHAGAHAEEAFFNTILPAFDPALKYNVTWYVSSSPCAACADRILKTLSKTKNLRLLILVSRLFMWEEPEVQAALKKLKEAGCKLRIMKPQDFEYIWQNFVEQEEGESKAFEPWEDIQENFLYYEEKLADILK", "length": 224 }, "evidence": [ { "id": "A0A4X1SNG6", "url": "https://omabrowser.org/oma/group/A0A4X1SNG6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y235-1", "protein_name": "C->U-editing enzyme APOBEC-2", "gene_name": "APOBEC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQKEEAAVATEAASQNGEDLENLDDPEKLKELIELPPFEIVTGERLPANFFKFQFRNVEYSSGRNKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAFFNTILPAFDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYEEKLADILK", "length": 224 }, "evidence": [ { "id": "A0A4X1SNG6", "url": "https://omabrowser.org/oma/group/A0A4X1SNG6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of gene expression via chromosomal CpG island demethylation", "id": "GO:0044029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044029", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SNG6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SNG6" } ], "pmid": "" }, { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SNG6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SNG6" } ], "pmid": "" }, { "name": "cytidine to uridine editing", "id": "GO:0016554", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016554", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SNG6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SNG6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SNG6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SNG6" } ], "pmid": "" }, { "name": "cytidine deaminase activity", "id": "GO:0004126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004126", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SNG6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SNG6" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SNG6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SNG6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SNG6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SNG6" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SNG6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SNG6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SNG6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SNG6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 66, "end_pos": 68, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "21772", "name": "", "equation": "cytidine(6666) in apoB mRNA + H2O + H(+) = uridine(6666) in apoB mRNA + NH4(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "21772", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/21772" } ] }, { "id": "R-SSC-77609", "name": "Binding of APOBEC-1 to form editosome", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-77609", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77609" } ] }, { "id": "R-SSC-83677", "name": "C4 deamination of cytidine", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [ "R-ALL-76230" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-83677", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-83677" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-76230", "participant_name": "NH3 [nucleoplasm]", "crossref": [ { "id": "C00014", "database": "COMPOUND", "url": "" }, { "id": "HMDB0033934", "database": "HMDB Metabolite", "url": "" }, { "id": "HMDB0000051", "database": "HMDB Metabolite", "url": "" }, { "id": "8145696", "database": "PubChem Substance", "url": "" }, { "id": "16134", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1SNG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SNG6" }, { "id": "PS51747", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51747" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CMP/dCMP-type deaminase", "eco_id": "ECO_0000259", "start_pos": 64, "end_pos": 169, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 66, "end_pos": 68 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043369", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043369", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "VVQENQY", "url": "https://omabrowser.org/oma/group/VVQENQY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47312", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47312", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47312:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47312:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07653", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07653", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020950069", "url": 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"header": "tr|A0A4X1SNV0-1|A0A4X1SNV0_PIG Isoform 1 of MIA SH3 domain containing OS=Sus scrofa OX=9823 GN=MIA PE=3 SV=1 CANONICAL=A0A4X1SNV0-1" }, "locus": { "chromosome": "6", "start_pos": 48988363, "end_pos": 48986932, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003329.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003329.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003247.1", "url": "https://www.ensembl.org/id/ENSSSCP00000003247.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson 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"MNLFIYVLLLSVWTNSCLDTNQSDETSTAGAKHRESMETKMDTFRKHLLIIVIGIMTIAFVFTCLCLLHYNCLSDDVPKAGTVKKEDIKAKSSRSSKISFSDSKTASLCDPEKQSMPSSIDKLPGLSSPEKASIPSSAEKLTKPSSQEKSCTPESPKKVFRSSCQGKSHRTCSPDKARKRAHAHKEVGQVSSSYPSKAVRPPWQPSPQHPVSPTNSPCPPYPQNQTLSNPSSLSKLTKSHRYHKLKRSVNTGRAERLSRPQSVKSCRCCKEKCLIYRAASGPLVNNISEAKKKNAQSPPFPHKLKPFPKPFHKIDSRDNVSCGNASDHDMLTHDSDGDSDREITIICNMKRKEFIY", "length": 356, "header": "tr|A0A4X1SRU7-1|A0A4X1SRU7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1SRU7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SRU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SRU7/entry#A0A4X1SRU7-1", "sequence": { "sequence": "MNLFIYVLLLSVWTNSCLDTNQSDETSTAGAKHRESMETKMDTFRKHLLIIVIGIMTIAFVFTCLCLLHYNCLSDDVPKAGTVKKEDIKAKSSRSSKISFSDSKTASLCDPEKQSMPSSIDKLPGLSSPEKASIPSSAEKLTKPSSQEKSCTPESPKKVFRSSCQGKSHRTCSPDKARKRAHAHKEVGQVSSSYPSKAVRPPWQPSPQHPVSPTNSPCPPYPQNQTLSNPSSLSKLTKSHRYHKLKRSVNTGRAERLSRPQSVKSCRCCKEKCLIYRAASGPLVNNISEAKKKNAQSPPFPHKLKPFPKPFHKIDSRDNVSCGNASDHDMLTHDSDGDSDREITIICNMKRKEFIY", "length": 356, "header": "tr|A0A4X1SRU7-1|A0A4X1SRU7_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1SRU7-1" }, "locus": { "chromosome": "X", "start_pos": 114600541, "end_pos": 114596812, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093429.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093429.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078242.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078242.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SRU7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SRU7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524009", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524009", "resource": "KEGG Pathway" } ], 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"evidence": [ { "database": "UniProtKB", "id": "A0A4X1SS77", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SS77" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SS77", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SS77" } ], "pmid": "" }, { "name": "cyclin-dependent protein kinase holoenzyme complex", "id": "GO:0000307", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000307", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SS77", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SS77" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "G1/S transition of mitotic cell cycle", "id": "GO:0000082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000082", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SS77", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SS77" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cyclin-dependent protein serine/threonine kinase regulator activity", "id": "GO:0016538", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016538", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SS77", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SS77" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1SS77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SS77" }, { "id": "SM00385", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00385" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cyclin-like", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 91, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": "" } ], 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Plays a dual role in the regulation of ribosomal DNA (rDNA) transcription. 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"https://www.ebi.ac.uk/interpro/entry/IPR004000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511382", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511382", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FFEEYEC", "url": "https://omabrowser.org/oma/group/FFEEYEC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SSP2", "url": "https://www.orthodb.org/?gene=A0A4X1SSP2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SUJ5", "url": "https://www.orthodb.org/?gene=A0A4X1SUJ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11937", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11937", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00022", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00022", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003355720", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355720", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1SSP2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SSP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSP2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SUJ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SUJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SUJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SUJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": 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"MTTLVLDNGAYNAKIGYSHENVSVIPNCQFRSKTARLKTFTANQIDEIKDPSGLFYILPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYRQLHVMDETHVINQVKEDVCYVSQDFYRDMDIAKLKGEENTVMIDYVLPDFSTIKKGFCKPREEMVLSGKYKSGEQILRLANERFAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNTLFPGFRDRVYSEVRCLTPTDYDVSVVLPENPITYAWEGGKLISENDDFEDMVVTREDYEENGHSVCEEKFDI", "length": 396, "header": "tr|A0A4X1SSP2-1|A0A4X1SSP2_PIG Isoform 1 of Actin-related protein 6 OS=Sus scrofa OX=9823 GN=ACTR6 PE=3 SV=1 CANONICAL=A0A4X1SSP2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SSP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSP2/entry#A0A4X1SSP2-1", "sequence": { "sequence": "MTTLVLDNGAYNAKIGYSHENVSVIPNCQFRSKTARLKTFTANQIDEIKDPSGLFYILPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYRQLHVMDETHVINQVKEDVCYVSQDFYRDMDIAKLKGEENTVMIDYVLPDFSTIKKGFCKPREEMVLSGKYKSGEQILRLANERFAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNTLFPGFRDRVYSEVRCLTPTDYDVSVVLPENPITYAWEGGKLISENDDFEDMVVTREDYEENGHSVCEEKFDI", "length": 396, "header": "tr|A0A4X1SSP2-1|A0A4X1SSP2_PIG Isoform 1 of Actin-related protein 6 OS=Sus scrofa OX=9823 GN=ACTR6 PE=3 SV=1 CANONICAL=A0A4X1SSP2-1" }, "locus": { "chromosome": "5", "start_pos": 83928990, "end_pos": 83909973, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000963.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000963.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000943.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000943.2" } ] } }, { "isoform_ac": "A0A4X1SUJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSP2/entry#A0A4X1SUJ5-1", "sequence": { "sequence": "MTTLVLDNGAYNAKIGYSHENVSVIPNCQFRSKTARLKTFTANQIDEIKDPSGLFYILPFQKGYLVNWDVQRQVWDYLFGKEMYQVTNWTGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYRQLHVMDETHVINQVKEDVCYVSQDFYRDMDIAKLKGEENTVMIDYVLPDFSTIKKGFCKPREEMVLSGKYKSGEQILRLANERFAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNTLFPGFRDRVYSEVRCLTPTDYDVSVVLPENPITYAWEGGKLISENDDFEDMVVTREDYEENGHSVCEEKFDI", "length": 359, "header": "tr|A0A4X1SUJ5-1|A0A4X1SUJ5_PIG Computationally mapped isoform of Actin-related protein 6 OS=Sus scrofa OX=9823 GN=ACTR6 PE=3 SV=1 CANONICAL=A0A4X1SSP2-1" }, "locus": { "chromosome": "5", "start_pos": 83928990, "end_pos": 83909973, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073787.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073787.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067646.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067646.1" } ] } }, { "isoform_ac": "A0A5G2QXQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSP2/entry#A0A5G2QXQ2-1", "sequence": { "sequence": "MTTLVLDNGAYNAKIGYSHENVSVIPNCQFRSKTARLKTFTANQIDEIKDPSGLFYILPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYRQLHVMDETHVINQVKEDVCYVSQDFYRDMDIAKLKGEENTVMIDYVLPDFSTIKKGFCKPREEMVLSGKYKSGEQILRLANERFAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNTLFPGFRDRVYSEVRCLTPTDYDVSVVLPEKRKNKMIRLIFQWIKGDEVYEVPTIIAALLLMPGKVGN", "length": 369, "header": "tr|A0A5G2QXQ2-1|A0A4X1SSP2_PIG Computationally mapped isoform of Actin-related protein 6 OS=Sus scrofa OX=9823 GN=ACTR6 PE=3 SV=2 CANONICAL=A0A4X1SSP2-1" }, "locus": { "chromosome": "5", "start_pos": 83928990, "end_pos": 83910068, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080482.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080482.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068922.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068922.2" } ] } }, { "isoform_ac": "A0A8D1HW11-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSP2/entry#A0A8D1HW11-1", "sequence": { "sequence": "MTTLVLDNGAYNAKIGYSHENVSVIPNCQFRSKTARLKTFTANQIDEIKDPSGLFYILPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRQLHVMDETHVINQVKEDVCYVSQDFYRDMDIAKLKGEENTVMIDYVLPDFSTIKKGFCKPREEMVLSGKYKSGEQILRLANERFAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNTLFPGFRDRVYSEVRCLTPTDYDVSVVLPENPITYAWEGGKLISENDDFEDMVVTREDYEENGHSVCEEKFDI", "length": 377, "header": "tr|A0A8D1HW11-1|A0A4X1SSP2_PIG Computationally mapped isoform of Actin-related protein 6 OS=Sus scrofa OX=9823 GN=ACTR6 PE=3 SV=1 CANONICAL=A0A4X1SSP2-1" }, "locus": { "chromosome": "5", "start_pos": 83928990, "end_pos": 83909973, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080513.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080513.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068164.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068164.1" } ] } }, { "isoform_ac": "A0A8D1NDP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSP2/entry#A0A8D1NDP7-1", "sequence": { "sequence": "MTTLVLDNGAYNAKIGYSHENVSVIPNCQFRSKTARLKTFTANQIDEIKDPSGLFYILPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAIC", "length": 123, "header": "tr|A0A8D1NDP7-1|A0A4X1SSP2_PIG Computationally mapped isoform of Actin-related protein 6 OS=Sus scrofa OX=9823 GN=ACTR6 PE=3 SV=1 CANONICAL=A0A4X1SSP2-1" }, "locus": { "chromosome": "5", "start_pos": 83928990, "end_pos": 83917799, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088899.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088899.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066646.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066646.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXQ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511382", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511382", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0L1W3-1", "protein_name": "Actin-related protein 6", "gene_name": "Actr6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MECHCHRKTMRLKIWIQGLEKRLRCLTSGVLRCQGNRKLSVGHAPINHRVPEEACAEEIQTVEKRPRCGVVGPEMTTLVLDNGAYNAKIGYSHDSVSVIPNCQFRSKTARLKTFTANQIDEIKDPSGLFYILPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNALADLELTEIHLSVLLSTGIKAGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYRQLHVMDETHVINQVKEDVCYVSQDFYRDMDIAKLKGEDNTVMIDYVLPDFSTIKKGFCKPREEMVLSGKYKSGEQILRLANERFAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRERVYSEVRCLTPTDYDVSVVLPENPITYSWEGGKLISENDDFEDMVVTREDYEENGHSVCEEKFDI", "length": 491 }, "evidence": [ { "id": "A0A4X1SSP2", "url": "https://omabrowser.org/oma/group/A0A4X1SSP2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HVK1-1", 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"database": "UniProtKB", "id": "A0A4X1STE4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STE4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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{ "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1STU0-1", "uniprot_ac": "A0A4X1STU0", "uniprot_id": "A0A4X1STU0_PIG", "mass": { "chemical_mass": 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"MPTWGAGSSSPDRFAVSAEAEDKVREQQPHVERIFRVGMSVLPKDCPENPHIWLQLEGPKENASRAKEYLKGLCNPELQNEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPGAPGSLMVSGLTEAFVMVQSRVEELVERLSWEFLPGPSPGASQCAGVLRDFSALLQSRVDAYTEALLQLPLAIQEELLSLVQEASRGQGPQAFPSWEQGSPGLHQEVRTPLSEGRESLDTGPTGWRESRDERHALEKEREKQGAPRETDLGWKELPREETWERQGAFGSQIGGGEAGQAAPLKGKALGKEGVPQEKGRFWVQGEPPGAQGPCQKAAQPRGASLLQRLHNGKASPPRVPSPPPAPEPPWHCGDRGDRADKQQVVARGRGSPWKRGTRGGNLVTGTQRFQEALQDPFTLCLANVPGQPDLRHIVIDGSNVAMVHGLQHYFSSRGIAIAVQYFWDRGHRDITVFVPQWRFSKDSKVREGHFLHKLYSLSLLSLTPSRVLDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEESEKWMAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDEFLKKPVRAQGSSKAQHSARGFAEHGNQQQGKKEEEKGSGGLRKTRETERLRRQLLEVFWGQDHKVDFILQREPYCRDINQLSEALLSLNF", "length": 663, "header": "tr|A0A4X1STU0-1|A0A4X1STU0_PIG Isoform 1 of KH and NYN domain containing OS=Sus scrofa OX=9823 GN=KHNYN PE=3 SV=1 CANONICAL=A0A4X1STU0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1STU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STU0/entry#A0A4X1STU0-1", "sequence": { "sequence": 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"ENSSSCT00000046595.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046595.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047280.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047280.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STU0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STU0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100158093", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158093", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LZS8-1", "protein_name": "KH and NYN domain containing", "gene_name": "Khnyn", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDLLSGRGLCTDNFLSSLPARWTCYLLGLFTSSVTRTPQVEAMSIWGFASPTPDRFAVSAEAEDKVREQQARLERIFSVGMSVLSKDCPENPHIWLQLEGPKENICRAKEYLKGLCSPELQSEIRYPPRLHCIFVGAQGFFLDCLAWSTSAHLVPLVPGSLMISGLTEAFVMAQSRVEELAQRLSWGLLPLSCPGALDNGRVLRDFSALLQTREDAYTEALLQLPLAVQEELLSLVQEASRGQGPQTLPSHEVGSPGMLSSQYQGVRAPLSEDRESLATGVAGLGKSQAVRGPSHAVEKEGRKQDAVRDMGSGWKEPSGEEVCETGVAFRSQLAGGGAEEVAPLKGRAFGKQEVPQQRGGFGVQGEPSGAHVPCQRAAPTRGASLLQRLHNGNTSPLRVPSPPPAPEPPWPCGDRDRDRDRDRDRDRDRGDRGDKQQAGARGRGSPWKRGTRGGNLVTGTQRFQEALQDPFTLCLANVPGQPDLRHVVIDGSNVAMVHGLQHYFSSRGIALAVQYFWDRGHRDITVFVPQWRFSKDSKVRESHFLQKLYSLSLLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEESDKWMAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDEFLKKPVRKQGSSKSQQPSKGPTEHGHQQQGKEVEKGSGGIRKTRETERLRRQLLEVFWGQDHKVDFILQREPYCRDINQLSEALLSLNF", "length": 726 }, "evidence": [ { "id": "A0A4X1STU0", "url": "https://omabrowser.org/oma/group/A0A4X1STU0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HDH7-1", "protein_name": "Protein KHNYN", "gene_name": "Khnyn", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSTWGLASSTPDRFAVSAVAENKVREQQARLERIFSVGMSVLSKDCPENPHIWLQLEGPKENVCRAKEYLKGLCSPELQSEIRYPPRLHCVFQGAQGFFLDCLAWSTSAHLVPLVPGSLMISGLTEAFVMAQSRVEELVQRLSWDLQLPSYSGVSASAGVLRDFSALLQTRKDAYTEALLQLPLAVQEELLSLVQEASREHGLQALPSHEQGSPDLLSAQFQGVRAPLNKGGESPGTGMVGWGESKAARGESHSAEKEGRKQDAVRDMHSGQKDASGEEDWERGVAFKSQPAGGGAEEVVPLKGKALGKEEVPQQRGGFSMQGEPSGAPVPTQRAAQTRGASLLQRLHNGNTSPPRVPSPPSAPEPPWPCGDRDRGDRGDKQQAGARGRGSPWKRGTRGGNLVTGTQRFQEALQDPFTLCLANVPGQPDLRHIVIDGSNVAMVHGLQHYFSSRGIALAVQYFWDRGHRDITVFVPQWRFSKDSKVRESHFLQKLYSLSLLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEESDKWMAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDEFLKKTVRKQGSAKTPQPSRGPTDHGNQQQGKQGKEEERGSGGIRKTRETERLRRQLLEVFWGQDHKVDFILQREPYCRDINQLSEALLSLNF", "length": 674 }, "evidence": [ { "id": "A0A4X1STU0", "url": "https://omabrowser.org/oma/group/A0A4X1STU0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O15037-1", "protein_name": "Protein KHNYN", "gene_name": "KHNYN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPTWGARPASPDRFAVSAEAENKVREQQPHVERIFSVGVSVLPKDCPDNPHIWLQLEGPKENASRAKEYLKGLCSPELQDEIHYPPKLHCIFLGAQGFFLDCLAWSTSAHLVPRAPGSLMISGLTEAFVMAQSRVEELAERLSWDFTPGPSSGASQCTGVLRDFSALLQSPGDAHREALLQLPLAVQEELLSLVQEASSGQGPGALASWEGRSSALLGAQCQGVRAPPSDGRESLDTGSMGPGDCRGARGDTYAVEKEGGKQGGPREMDWGWKELPGEEAWEREVALRPQSVGGGARESAPLKGKALGKEEIALGGGGFCVHREPPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGDRGDCGDRGDVGDRGDKQQGMARGRGPQWKRGARGGNLVTGTQRFKEALQDPFTLCLANVPGQPDLRHIVIDGSNVAMVHGLQHYFSSRGIAIAVQYFWDRGHRDITVFVPQWRFSKDAKVRESHFLQKLYSLSLLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEESEKWMAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDEFLKKPARTQGSSKAQHPSRGFAEHGKQQQGREEEKGSGGIRKTRETERLRRQLLEVFWGQDHKVDFILQREPYCRDINQLSEALLSLNF", "length": 678 }, "evidence": [ { "id": "A0A4X1STU0", "url": "https://omabrowser.org/oma/group/A0A4X1STU0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80U38-1", "protein_name": "Protein KHNYN", "gene_name": "Khnyn", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTWGFASPTPDRFAVSAEAEDKVREQQTRLERIFNVGMSVLSKDCPENPHIWLQLEGPKENVCRAKEYLKGLCSPELQSEIHYPPRLHCIFLGAHGFFLDCLAWSTSAHLVPLLPGSLMISGLTEAFVMAQSRVEELVQRLSWDLQLQSCPGAPDNGGVLRDFSALLQTREDAYTEALLRLPLAVQEELLSLVQEASRGQGPSREVGSSGLLSPQFQGVRAPLNEGREFVGTRVAGSGKSPAVRGQSHTVEKEERKQDAVRDMGSGRKELSGEEVWEPGVAYRSQLAGGGAEEVAPLKGKASGKQEVPQQRGGFSVQGEPSGAHVPCQRAAPIRGASLLQRLHNGSASPPRVPSPPPAPEPPWPCGDRDRDRDRGDRGDKQQAGARGRGSPWKRGTRGGNLVTGTQRFQEALQDPFTLCLANVPGQPDLRHIVIDGSNVAMVHGLQHYFSSRGIALAVQYFWDRGHRDITVFVPQWRFSKDSKVRESHFLQKLYSLSLLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEESDKWMAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDEFLKKPVRKQGSSKTQQPSKGSTEQANQQQGKDADRSNGGIRKTRETERLRRQLLEVFWGQDHKVDFILQREPYCRDINQLSEALLSLNF", "length": 671 }, "evidence": [ { "id": "A0A4X1STU0", "url": "https://omabrowser.org/oma/group/A0A4X1STU0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STU0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STU0" } ], "pmid": "" }, { "name": "RNA endonuclease activity", "id": "GO:0004521", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004521", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STU0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STU0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STU0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STU0" } ], "pmid": "" }, { "name": "cytoplasmic ribonucleoprotein granule", "id": "GO:0036464", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036464", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STU0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STU0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "3'-UTR-mediated mRNA destabilization", "id": "GO:0061158", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061158", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1STU0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STU0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1STU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STU0" }, { "id": "PF23054", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23054" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "N4BP1 C-terminal UBA", "eco_id": "ECO_0000259", "start_pos": 615, "end_pos": 660, "start_aa": "Arg", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1STU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STU0" }, { "id": "PF23050", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23050" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "N4BP1 first type I KH-domain", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 75, "start_aa": "Asp", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1STU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STU0" }, { "id": "PF23052", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23052" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "N4BP1 second type I KH-domain", "eco_id": "ECO_0000259", "start_pos": 76, "end_pos": 196, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1STU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STU0" }, { "id": "PF11977", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11977" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNase NYN", "eco_id": "ECO_0000259", "start_pos": 421, "end_pos": 573, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 62, "end_pos": 64 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1SU74-1", "uniprot_ac": "A0A4X1SU74", "uniprot_id": "A0A4X1SU74_PIG", "mass": { "chemical_mass": 58996.0, "monoisotopic_mass": 58996.0 }, "refseq": { "ac": "XP_013833142", "name": "butyrophilin-like protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013833142" }, "gene_names": [ { "name": "LOC100513868", "type": "recommended", "evidence": [ { "id": "A0A4X1SU74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU74" } ] }, { "name": "LOC100513868", "type": "synonym", "evidence": [ { "id": "XP_013833142", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013833142" } ] } ], "protein_names": [ { "name": "Butyrophilin-like protein 1", "type": "recommended", "evidence": [ { "id": "A0A4X1SU74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU74/entry#names_and_taxonomy" } ] }, { "name": "butyrophilin-like protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013833142", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013833142" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SU74", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU74" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100513868", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU74", "locus": {} } ], "crossref": [ { "id": "cd05713", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05713", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513868", "url": "https://www.ncbi.nlm.nih.gov/gene/100513868", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513868", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513868", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1SU74", "url": "https://www.orthodb.org/?gene=A0A4X1SU74", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24100", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24100", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24100:SF134", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24100:SF134", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22705", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22705", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013833142", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013833142", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1SU74", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SU74-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU74-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPI2", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPI2-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPI2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPI5", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPI5-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPI5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQK5", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQK5-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQK5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQS3", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQS3-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQS3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNVLCFQLVPLSAPKKMADFPSFFPTGFFSILALLQMSTWCSAVSKFSVKGPAQPILVLLGADASLPCQLFPEQSAAHMQIRWYRAQFSPAVLVYQNGQEQGGEQMLEYRGRTELVQDSIGRGTVTLLIQQIRASDDGQYRCHFKEGYISQEAIVELHVIGLGAAPHVHMMGPEDDGIRVLCSSGGWFPKPRVQWSDMAGAKLPSLSESQSQDGDGLFHVEASLVVTDSSLGNVTCSFQNPLSGQEKVSALFLPEPFFPRTSPWKKALAGTLPVLVLLLIGMSYFGWREHKAKEREVMERKKESQEKEEMSSNKERALAAKEKLKAELDQRKALYKEDWKKALLYPDWRKELFKPAPITLNHENSSEGDSDPVREENFGKEAPSDTPRDCNLITLEQEAFSSGRHYWEVDIKDTDEWTLGIYEMPMQGEGKCNDLPKKFRVLEKKGPDYRALICSNQDISQEELVQIEKDPQKIVIFLGYEDGDISFYSMTDGAHIYSFTHCNFFGQISPYVKLKSYLHQFK", "length": 522, "header": "tr|A0A4X1SU74-1|A0A4X1SU74_PIG Isoform 1 of Butyrophilin-like protein 1 OS=Sus scrofa OX=9823 GN=LOC100513868 PE=1 SV=1 CANONICAL=A0A4X1SU74-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SU74-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU74/entry#A0A4X1SU74-1", "sequence": { "sequence": "MNVLCFQLVPLSAPKKMADFPSFFPTGFFSILALLQMSTWCSAVSKFSVKGPAQPILVLLGADASLPCQLFPEQSAAHMQIRWYRAQFSPAVLVYQNGQEQGGEQMLEYRGRTELVQDSIGRGTVTLLIQQIRASDDGQYRCHFKEGYISQEAIVELHVIGLGAAPHVHMMGPEDDGIRVLCSSGGWFPKPRVQWSDMAGAKLPSLSESQSQDGDGLFHVEASLVVTDSSLGNVTCSFQNPLSGQEKVSALFLPEPFFPRTSPWKKALAGTLPVLVLLLIGMSYFGWREHKAKEREVMERKKESQEKEEMSSNKERALAAKEKLKAELDQRKALYKEDWKKALLYPDWRKELFKPAPITLNHENSSEGDSDPVREENFGKEAPSDTPRDCNLITLEQEAFSSGRHYWEVDIKDTDEWTLGIYEMPMQGEGKCNDLPKKFRVLEKKGPDYRALICSNQDISQEELVQIEKDPQKIVIFLGYEDGDISFYSMTDGAHIYSFTHCNFFGQISPYVKLKSYLHQFK", "length": 522, "header": "tr|A0A4X1SU74-1|A0A4X1SU74_PIG Isoform 1 of Butyrophilin-like protein 1 OS=Sus scrofa OX=9823 GN=LOC100513868 PE=1 SV=1 CANONICAL=A0A4X1SU74-1" }, "locus": { "chromosome": "7", "start_pos": 24772461, "end_pos": 24764748, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107725.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107725.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000082115.1", "url": "https://www.ensembl.org/id/ENSSSCP00000082115.1" } ] } }, { "isoform_ac": "A0ABB5UPI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU74/entry#A0ABB5UPI2-1", "sequence": { "sequence": "MADFPSFFPTGFFSILALLQMSTWCSAVSKFSVKGPAQPILVLLGADASLPCQLFPEQSAAHMQIRWYRAQFSPAVLVYQNGQEQGGEQMLEYRGRTELVQDSIGRGTVTLLIQQIRASDDGQYRCHFKEGYISQEAIVELHVIGLGAAPHVHMMGPEDDGIRVLCSSGGWFPKPRVQWSDMAGAKLPSLSESQSQDGDGLFHVEASLVVTDSSLGNVTCSFQNPLSGQEKVSALFLPEPFFPRTSPWKKALAGTLPVLVLLLIGMSYFGWREHKAKEREVMERKKESQEKEEMSSNKERALAAKEKLKAELDQRKALYKEDWKKALLYPDWRKELFKPAPITLNHENSSEGDSDPVREENFGKEAPSDTPRDCNLITLEQEAFSSGRHYWEVDIKDTDEWTLGIYEMPMQGEGKCNDLPKKFRVLEKKGPDYRALICSNQDISQEELVQIEKDPQKIVIFLGYEDGDISFYSMTDGAHIYSFTHCNFFGQISPYVKLKSYLHQFK", "length": 506, "header": "tr|A0ABB5UPI2-1|A0ABB5UPI2_PIG Computationally mapped isoform of Butyrophilin-like protein 1 OS=Sus scrofa OX=9823 GN=LOC100513868 PE=1 SV=1 CANONICAL=A0A4X1SU74-1" }, "locus": { "chromosome": "7", "start_pos": 24772413, "end_pos": 24764748, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107732.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107732.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000082122.1", "url": "https://www.ensembl.org/id/ENSSSCP00000082122.1" } ] } }, { "isoform_ac": "A0ABB5UPI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU74/entry#A0ABB5UPI5-1", "sequence": { "sequence": "MADFPSFFPTGFFSILALLQMSTWCSAVSKFSVKGPAQPILVLLGADASLPCQLFPEQSAAHMQIRWYRAQFSPAVLVYQNGQEQGGEQMLEYRGRTELVQDSIGRGTVTLLIQQIRASDDGQYRCHFKEGYISQEAIVELHVIGLGAAPHVHMMGPEDDGIRVLCSSGGWFPKPRVQWSDMAGAKLPSLSESQTPSLARRKCQPFSSQSPSSPGRRHGKKPWLGHSLCWCFSSSG", "length": 236, "header": "tr|A0ABB5UPI5-1|A0ABB5UPI5_PIG Computationally mapped isoform of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100513868 PE=1 SV=1 CANONICAL=A0A4X1SU74-1" }, "locus": { "chromosome": "7", "start_pos": 24772413, "end_pos": 24769723, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107733.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107733.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000082123.1", "url": "https://www.ensembl.org/id/ENSSSCP00000082123.1" } ] } }, { "isoform_ac": "A0ABB5UQK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SU74/entry#A0ABB5UQK5-1", "sequence": { "sequence": "MADFPSFFPTGFFSILALLQMSTWCSAVSKFSVKGPAQPILVLLGADASLPCQLFPEQSAAHMQIRWYRAQFSPAVLVYQNGQEQGGEQMLEYRGRTELVQDSIGRGTVTLLIQQIRASDDGQYRCHFKEGYISQEAIVELHVIGLGAAPHVHMMGPEDDGIRVLCSSGGWFPKPRVQWSDMAGAKLPSLSESQSQDGDGLFHVEASLVVTDSSLGNVTCSFQNPLSGQEKVSALFLPEPFFPRTSPWKKALAGTLPVLVLLLIGMSYFGWREHKAKEREVMERKKESQEKEEMSSNKERALAAKGKARLNSFSYPPKSGEARPQFDGFYIFSFQRNSRQSSTSERHYTRKIGKRPCYILTGGRNFSNLLL", "length": 371, "header": 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"https://www.uniprot.org/uniprotkb/A0A4X1SWJ8", "locus": { "chromosome": "16", "start_pos": 27538665, "end_pos": 27471003, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016867", "url": "https://www.ensembl.org/id/ENSSSCG00000016867" } ] } } ], "crossref": [ { "id": "A0A4X1SWJ8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SWJ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100523519", "url": "https://www.ncbi.nlm.nih.gov/gene/100523519", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523519", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523519", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MTKLNCV", "url": "https://omabrowser.org/oma/group/MTKLNCV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SV99", "url": "https://www.orthodb.org/?gene=A0A4X1SV99", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35253", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35253", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35253:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35253:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SV99", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SV99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SV99-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SV99-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SWJ8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SWJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SWJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SWJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNQSSEGCMKKIGSVNLDKLINDFSQIEKKMIEISGKNNILDMQLEKANCLLKVMQTKEVSIKEGENEQLKRNSDLMKEKLKSHEQEYKNNIAKLMNEMKIKEEGHKIEITKLYQDMQKKVELNEEKNKELIEKKEMEISELNAKLRTQEKEKQNEIVKLQLEFDAKLARVQTKAKPYPDSTVLPHSIYRRKLQHLQEEKNKEIAILRNTIHDLEQRLSVSKDSQLKLVGKDSHFKRRRF", "length": 240, "header": "tr|A0A4X1SWJ8-1|A0A4X1SWJ8_PIG Isoform 1 of Coiled-coil domain containing 152 OS=Sus scrofa OX=9823 GN=CCDC152 PE=4 SV=1 CANONICAL=A0A4X1SWJ8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SV99-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SWJ8/entry#A0A4X1SV99-1", "sequence": { "sequence": "MNQSSEGCMKKIGSVNLDKLINDFSQIEKKMIEISGKNNILDMQLEKANCLLKVMQTKEVSIKEECATLHDMIKGLQQTVEYHHNLKGENEQLKRNSDLMKEKLKSHEQEYKNNIAKLMNEMKIKEEGHKIEITKLYQDMQKKVELNEEKNKELIEKKEMEISELNAKLRTQEKEKQNEIVKLQLEFDAKLARVQTKAKPYPDSTVLPHSIYRRKLQHLQEEKNKEIAILRNTIHDLEQRLSVSKDSQLKLVGKDSHFKRRRF", "length": 263, "header": "tr|A0A4X1SV99-1|A0A4X1SWJ8_PIG Computationally mapped isoform of Coiled-coil domain containing 152 OS=Sus scrofa OX=9823 GN=CCDC152 PE=4 SV=1 CANONICAL=A0A4X1SWJ8-1" }, "locus": { "chromosome": "16", "start_pos": 27537773, "end_pos": 27474697, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082583.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082583.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072265.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072265.1" } ] } }, { "isoform_ac": "A0A4X1SWJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SWJ8/entry#A0A4X1SWJ8-1", "sequence": { "sequence": "MNQSSEGCMKKIGSVNLDKLINDFSQIEKKMIEISGKNNILDMQLEKANCLLKVMQTKEVSIKEGENEQLKRNSDLMKEKLKSHEQEYKNNIAKLMNEMKIKEEGHKIEITKLYQDMQKKVELNEEKNKELIEKKEMEISELNAKLRTQEKEKQNEIVKLQLEFDAKLARVQTKAKPYPDSTVLPHSIYRRKLQHLQEEKNKEIAILRNTIHDLEQRLSVSKDSQLKLVGKDSHFKRRRF", "length": 240, "header": "tr|A0A4X1SWJ8-1|A0A4X1SWJ8_PIG Isoform 1 of Coiled-coil domain containing 152 OS=Sus scrofa OX=9823 GN=CCDC152 PE=4 SV=1 CANONICAL=A0A4X1SWJ8-1" }, "locus": { "chromosome": "16", "start_pos": 27537773, "end_pos": 27474697, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018371.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018371.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017875.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017875.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SV99", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SV99" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523519", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523519", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2N3H7-1", "protein_name": "Coiled-coil domain-containing protein 152 isoform X1", "gene_name": "Ccdc152", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDQSNEGSMKKISNVNLDKLIDDFSQIEKKMIEITGKNNLLDIQLEKNNSLLKIMQTKEATIKEECTTLHTMIKGLQQTIQYQHNLKDENEQLKRNVEFMKEKLKSHEQEYKNSIAKLISEMKIKEEGHKIEMSKLFQDMQKKVELKEEKHQELMAKKEMEISELNTKFRTQEKEKQNEILRLRLEFDTKLARVQTKSKSYPDATILPQSIYRRKLQYLQEEKSKEIASLQNTIRDLEQRLAAVKDSRLTRRRF", "length": 254 }, "evidence": [ { "id": "A0A4X1SWJ8", "url": "https://omabrowser.org/oma/group/A0A4X1SWJ8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9SJ10-1", "protein_name": "Coiled-coil domain containing 152", "gene_name": "CCDC152", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNQNSEGCMKKISSVNLDKLINDFSQIEKKMIESSGKNNILDMQLEKANCLLRVMQTKEVAMKQECATLHDMIKGLQHTIEYQHNLKGENEQLKRNADLMKEKFKMHEQEHRNNIAKLMSEMKIKEEGHKIEKTKLYQDMQKKVKLSEEKNKELIEKKELEISELNAKLRTQEREKQNEMIKLQLEFDAKLARVQTKTKSYPDSTVSPHSIYKRKLQHLQEEKDKEIAVLRNTVRDLEQRLSVSKDSQVKLVGKDPRFKRRRF", "length": 263 }, "evidence": [ { "id": "A0A4X1SWJ8", "url": "https://omabrowser.org/oma/group/A0A4X1SWJ8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E9PX14-1", "protein_name": "Coiled-coil domain containing 152", "gene_name": "Ccdc152", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQNSEECTKKIRTVNLDKLIDDFSQIEKKMIETAGKNNLLDIQLEKTNSLLKIMQTKETSMKEECIILHTMIKGLQQTVQYQHNLKDENEQLKRNVDFMKEKLKSHEQEYKNKIAKLISEMKIKEEEHKTEMSKLYLDMQKKVELNEEKHKELMARKEMEISELNAKLRTQEKEKQNEILRLHLEFDTKLARAQTKSKSYPDTTILLQSIYRRKLQHLQEEKSKEIASLQNTIRDLEQRLAACKDTRLMRRRF", "length": 254 }, "evidence": [ { "id": "A0A4X1SWJ8", "url": "https://omabrowser.org/oma/group/A0A4X1SWJ8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1M7D1-1", "protein_name": "Coiled-coil domain containing 152", "gene_name": "Ccdc152", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDQNSEGSMKKTSTVNLDKLIDDFSQIEKKMIEVTGKNNLLDIRLEKTNSLLKIMQAKETSMKEECITLHTMIKGLQQTVQYQHNLKGENEQLKRNVDFMKEKLKSHEQEYKNNIAKLISEMKIKEEEHKIELSKLYQDMQKKVELNEEKHKELMAKKEMEISELNATLKTQEKEKRNEILRLHIEFDTKLARAQTKSKPYPEATILPQSIYRRKLQHLQEEKNKEIASLQNTIRDLEQRLAASKDTRLTRRRF", "length": 254 }, "evidence": [ { "id": "A0A4X1SWJ8", "url": "https://omabrowser.org/oma/group/A0A4X1SWJ8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4G0S7-1", "protein_name": "Coiled-coil domain-containing protein 152", "gene_name": "CCDC152", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDQSSEGCMKKISSVNLDKLINDFSQIEKKMVETNGKNNILDIQLEKSNCLLKVMQAKEVSIKEECATLHNIIKGLQQTIEYQQNLKGENEQLKISADLIKEKLKSHEQEYKNNIAKLVSEMKIKEEGYKKEISKLYQDMQRKVELNEEKHKELIEKKEMEISELNAKLRSQEKEKQNEIIKLQLEFDAKLARVQTKSKSYQDSTVLPQSIYRRKLQHFQEEKNKEIAILRNTIRDLEQRLSVGKDSHLKRRRF", "length": 254 }, "evidence": [ { "id": "A0A4X1SWJ8", "url": "https://omabrowser.org/oma/group/A0A4X1SWJ8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 2, "end_pos": 4, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 2, "end_pos": 4 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1SVE2-1", "uniprot_ac": "A0A4X1SVE2", "uniprot_id": "A0A4X1SVE2_PIG", "mass": { "chemical_mass": 15674.0, "monoisotopic_mass": 15674.0 }, "refseq": {}, "gene_names": [ { "name": "PIERCE1", "type": "recommended", "evidence": [ { "id": "A0A4X1SVE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SVE2" } ] } ], "protein_names": [ { "name": "Piercer of microtubule wall 1", "type": "synonym", "evidence": [ { "id": "A0A4X1SVE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SVE2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SVE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SVE2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PIERCE1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SVE2", "locus": {} } ], "crossref": [ { "id": "A0A4X1SVE2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SVE2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100518594", "url": "https://www.ncbi.nlm.nih.gov/gene/100518594", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "9CPC", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CPC&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR026507", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026507", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518594", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518594", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MFRNNTF", "url": "https://omabrowser.org/oma/group/MFRNNTF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SVE2", "url": "https://www.orthodb.org/?gene=A0A4X1SVE2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20899", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20899", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20899:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20899:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00009cpc", "url": "https://www.rcsb.org/structure/pdb_00009cpc", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CPC", "url": "https://www.rcsb.org/structure/9CPC", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF14892", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14892", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1SVE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SVE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SVE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SVE2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEENPQECAEPEEPEATASPEKTSDYYRVSEDLPARFNNPAWFRGYRTKEPPSVYRTSNQAYGSRAPTVHEMPKVFYPNSHKFSRQLAAGGMFQNNTFNVYMEKSIVTGPDNYITSYDRLNFHPSYRVNKPSICD", "length": 136, "header": "tr|A0A4X1SVE2-1|A0A4X1SVE2_PIG Isoform 1 of Piercer of microtubule wall 1 OS=Sus scrofa OX=9823 GN=PIERCE1 PE=1 SV=1 CANONICAL=A0A4X1SVE2-1" 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Qingwei, Huang Wei, Noteborn Willem E M, Brown Alan, Zeev-Ben-Mordehai Tzviya, Zhang Rui", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SVE2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SVE2" } ], "reference": [ { "type": "PubMed", "id": "39743588", "url": "https://glygen.org/publication/PubMed/39743588" } ] } ], "pathway": [ { "id": "ssc:100518594", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518594", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZTM5-1", "protein_name": "Piercer of microtubule wall 1", "gene_name": "Pierce1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEENPQECAEPVEPKAKPAPEKTSDYYRISEKLPDRFNNPGWFHGYSTNEAVSMYRTSNQTYGSRAPTAHEMPKAYYPSSNKFSTQHAAFGMFRRHNMNVCLDKSLVTGPDNHVTHYDPLNFHPSYNVNRPSICD", "length": 136 }, "evidence": [ { "id": "A0A4X1SVE2", "url": "https://omabrowser.org/oma/group/A0A4X1SVE2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { 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"https://www.uniprot.org/uniprotkb/A0A4X1SX12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SX12-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SX12-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S207", "url": "https://www.uniprot.org/uniprotkb/F1S207", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S207-1", "url": "https://www.uniprot.org/uniprotkb/F1S207-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVELEWIPETLYNTAISAVVDNYIRSRRDIRSLPENIQFDVYYKLYQQGRLCQLGSEFCELEVFAKVLRALDKRHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAIQVGFVLGGFLSDAGWYSDAEKVFLSCLQLCTLHDEMLHWFRAVECCVRLLHVRNGNCKYHLGEETFKLAQTYMDKLSKHGQQANKAALYGELCALLFAKSHYDEAYKWCIEAMKEITAGLPVKVVVDVLRQASKACVVKREFKKAEQLIKHAVYLARDHFGSKHPKYSDTLLDYGFYLLNVDNICQSVAIYQAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPEDHLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENAEKLYLRSIAIGKKLFGEGYSGLEYDYRGLIKLYNSIGNYEKVFEYHNVLSNWNRLRDRQYSVTDALEDVNTSPQSTEEVVQSFLISQNVEGPSC", "length": 585, "header": "tr|A0A4X1SX12-1|A0A4X1SX12_PIG Isoform 1 of Amyloid protein-binding protein 2 OS=Sus scrofa OX=9823 GN=APPBP2 PE=4 SV=1 CANONICAL=A0A4X1SX12-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SX12-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SX12/entry#A0A4X1SX12-1", "sequence": { "sequence": "MAAVELEWIPETLYNTAISAVVDNYIRSRRDIRSLPENIQFDVYYKLYQQGRLCQLGSEFCELEVFAKVLRALDKRHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAIQVGFVLGGFLSDAGWYSDAEKVFLSCLQLCTLHDEMLHWFRAVECCVRLLHVRNGNCKYHLGEETFKLAQTYMDKLSKHGQQANKAALYGELCALLFAKSHYDEAYKWCIEAMKEITAGLPVKVVVDVLRQASKACVVKREFKKAEQLIKHAVYLARDHFGSKHPKYSDTLLDYGFYLLNVDNICQSVAIYQAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPEDHLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENAEKLYLRSIAIGKKLFGEGYSGLEYDYRGLIKLYNSIGNYEKVFEYHNVLSNWNRLRDRQYSVTDALEDVNTSPQSTEEVVQSFLISQNVEGPSC", "length": 585, "header": "tr|A0A4X1SX12-1|A0A4X1SX12_PIG Isoform 1 of Amyloid protein-binding protein 2 OS=Sus scrofa OX=9823 GN=APPBP2 PE=4 SV=1 CANONICAL=A0A4X1SX12-1" }, "locus": { "chromosome": "12", "start_pos": 37674035, "end_pos": 37614078, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097355.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097355.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074984.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074984.1" } ] } }, { "isoform_ac": "F1S207-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SX12/entry#F1S207-1", "sequence": { "sequence": "MAAVELEWIPETLYNTAISAVVDNYIRSRRDIRSLPENIQFDVYYKLYQQGRLCQLGSEFCELEVFAKVLRALDKRHLLHHCFQALMDHGVKVASVLAYSFSRRCSYIAESDAAVKEKAIQVGFVLGGFLSDAGWYSDAEKVFLSCLQLCTLHDEMLHWFRAVECCVRLLHVRNGNCKYHLGEETFKLAQTYMDKLSKHGQQANKAALYGELCALLFAKSHYDEACVVKREFKKAEQLIKHAVYLARDHFGSKHPKYSDTLLDYGFYLLNVDNICQSVAIYQAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPEDHLLLASSKRVKALILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYDMNQYENAEKLYLRSIAIGKKLFGEGYSGLEYDYRGLIKLYNSIGNYEKVFEYHNVLSNWNRLRDRQYSVTDALEDVNTSPQSTEEVVQSFLISQNVEGPSC", "length": 555, "header": "tr|F1S207-1|A0A4X1SX12_PIG Computationally mapped isoform of Amyloid protein-binding protein 2 OS=Sus scrofa OX=9823 GN=APPBP2 PE=4 SV=4 CANONICAL=A0A4X1SX12-1" }, "locus": { "chromosome": "12", "start_pos": 37674035, "end_pos": 37614078, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019242.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019242.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018732.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018732.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S207", "url": "https://www.uniprot.org/uniprotkb/F1S207" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525889", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525889", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SX12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SX12" } ], "pmid": "" }, { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SX12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SX12" } ], "pmid": "" }, { "name": "cytoplasmic vesicle membrane", "id": "GO:0030659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030659", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SX12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SX12" } ], "pmid": "" }, { "name": "Cul2-RING ubiquitin ligase complex", "id": "GO:0031462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031462", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SX12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SX12" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SX12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SX12" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process via the C-end degron rule pathway", "id": "GO:0140627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140627", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SX12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SX12" } ], "pmid": "" }, { "name": "negative regulation of beige fat cell differentiation", "id": "GO:0160276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160276", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SX12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SX12" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SX12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SX12" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 561, "end_pos": 563, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 561, "end_pos": 563 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1SXC4-1", "uniprot_ac": "A0A4X1SXC4", "uniprot_id": "A0A4X1SXC4_PIG", "mass": { "chemical_mass": 42190.0, "monoisotopic_mass": 42190.0 }, "refseq": { "ac": "XP_003122955", "name": "coiled-coil domain-containing protein 34", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122955" }, "gene_names": [ { "name": "CCDC34", "type": "recommended", "evidence": [ { "id": "A0A4X1SXC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SXC4" } ] }, { "name": "CCDC34", "type": "synonym", "evidence": [ { "id": "XP_003122955", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122955" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 34", "type": "synonym", "evidence": [ { "id": "A0A4X1SXC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SXC4/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 34", "type": "synonym", "evidence": [ { "id": "XP_003122955", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122955" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SXC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SXC4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC34", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SXC4", "locus": { "chromosome": "2", "start_pos": 33021935, "end_pos": 32984193, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013336", "url": "https://www.ensembl.org/id/ENSSSCG00000013336" } ] } } ], "crossref": [ { "id": "A0A4X1SXC4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SXC4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100518823", "url": "https://www.ncbi.nlm.nih.gov/gene/100518823", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045323", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045323", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518823", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518823", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FTGDCRP", "url": "https://omabrowser.org/oma/group/FTGDCRP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SXC4", "url": "https://www.orthodb.org/?gene=A0A4X1SXC4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23247", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23247", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23247:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23247:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13904", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13904", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122955", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122955", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1SXC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SXC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SXC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SXC4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRAAGRWRATSPLPDTRLLAACRSRSRLSSGSFSALMEGARGQGLEAVEVCSLSPPLSCSNSTLSLLSPLGYQSFSLDDDDGDGEEEEEDVDEDAHDSEDQVESLRGMELQGCASVVGSEDTQEEQKQVCLPESSLTPWEVWFVGKEKVERDRLQQKAREELNQQLEKKKEVEEREKRKIIAEEKHKEWVQKKNEQKRKEREQKINKEMEEKAAKELEKEHLQEKAKEKYQEWLKKKNAEECEKKKKEKEKEKQRQAELQEKKEIAEKKFKEWLENAKNKPRPAAKSYGYANGKLTGFYSGNSYPEPAFYNPIPWKPIPVPPSKEAKDLSGKKTKRPVISQPHRSSSLVMHKARSNLCLGTLCRIQR", "length": 367, "header": "tr|A0A4X1SXC4-1|A0A4X1SXC4_PIG Isoform 1 of Coiled-coil domain containing 34 OS=Sus scrofa OX=9823 GN=CCDC34 PE=4 SV=1 CANONICAL=A0A4X1SXC4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SXC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SXC4/entry#A0A4X1SXC4-1", "sequence": { "sequence": "MRAAGRWRATSPLPDTRLLAACRSRSRLSSGSFSALMEGARGQGLEAVEVCSLSPPLSCSNSTLSLLSPLGYQSFSLDDDDGDGEEEEEDVDEDAHDSEDQVESLRGMELQGCASVVGSEDTQEEQKQVCLPESSLTPWEVWFVGKEKVERDRLQQKAREELNQQLEKKKEVEEREKRKIIAEEKHKEWVQKKNEQKRKEREQKINKEMEEKAAKELEKEHLQEKAKEKYQEWLKKKNAEECEKKKKEKEKEKQRQAELQEKKEIAEKKFKEWLENAKNKPRPAAKSYGYANGKLTGFYSGNSYPEPAFYNPIPWKPIPVPPSKEAKDLSGKKTKRPVISQPHRSSSLVMHKARSNLCLGTLCRIQR", "length": 367, "header": "tr|A0A4X1SXC4-1|A0A4X1SXC4_PIG Isoform 1 of Coiled-coil domain containing 34 OS=Sus scrofa OX=9823 GN=CCDC34 PE=4 SV=1 CANONICAL=A0A4X1SXC4-1" }, "locus": { "chromosome": "2", "start_pos": 33020931, "end_pos": 32984200, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014564.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014564.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014169.5", "url": "https://www.ensembl.org/id/ENSSSCP00000014169.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SXC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SXC4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518823", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518823", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TZP3-1", "protein_name": "Coiled-coil domain containing 34", "gene_name": "CCDC34", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MWAARRWGSASPLLEPRFIADCRSGSRPSSGFPVLMVGPGGTGLEAVEVCSLSTPLSCSNSTLSLLSPLGHQSFPFDNDDGDGEEEEDVDEDAYDSEAKVESLRGVELQGCTSTVGSEDNQEEQKQVRLPESSLTPWEVWFVGKEKVERDRLQQKALEELNQQLEKKKEVEDREKRKIIAEEKHKEWVQKKNEQKRKEREQKINKEMKEKAAKELEKEHLQEKAKEKYQEWLKKKNAEECEKKKKEKEKEKQRQAELQEKKEIAEKKFKEWLENAKNKPRPAAKSYGYANGKLTGFYSGNSYPEPAFYNPIPWKPIPVPPAKEVKDLSGKKTKRPVISQPHRASSLVMHKARSNLCLGTLCKIQR", "length": 365 }, "evidence": [ { "id": "A0A4X1SXC4", "url": "https://omabrowser.org/oma/group/A0A4X1SXC4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AB32THF5-1", "protein_name": "Coiled-coil domain-containing protein 34 isoform X1", "gene_name": "ccdc34", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVSYPAGSSHQKMSTLWALRDGHGQQQYSGLLTMSSFPSSTSKTLSSTPLKSRSSVLQRSRSLESSGGSTSSLISPIYHDSFDHSEDEPEDHFQPIRNLTITLNEDAAPLSPSRGEVDTTGLDDRLSSSQMKLSAWEQWIVAKAKEERVRKQQKAVEELTLKDKEKEKEKEEQKKKVTSDCKIQEWLQMKREQEKKDKQSRESQKSEKQLKEEQKRAEIERKAHEKYKEWLRKKKQEEAERKLREKDEAERRLAEERERKEKAEESFKEWLDGVKSKQKVSRQSSACSAGSYNNVNYPSPGFVNPIPWKPIHVPKQEPSARKSSSRRRKTGPAKSQSSSCFTCRPKDTVSFACKRR", "length": 356 }, "evidence": [ { "id": "A0A4X1SXC4", "url": "https://omabrowser.org/oma/group/A0A4X1SXC4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3I6E1-1", "protein_name": "Coiled-coil domain-containing protein 34", "gene_name": "Ccdc34", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MQAAGPWQAVSPVPCTRFLARCKPGFRPSSSSVADLIADSRSSGLEEVALTECLSPPPLSCSNSTLSLLSPLGHQSFPFGEDDSEGEDEEAVDEEARESEAKVASLEGLELQGQSSCEVESQDKQEQKQVQLRESSLTPWEMWFVGKEKEERGRLQQKVLEELNQQIEKRKEMEEREKRKIIAEEKHKEWVQKKNEQERKEREQKINKEMEEKAAKKLEKEHLQEKAKAKYQEWLKKKNAEECEKKKKEKEKEKQRQAELQEKKEIAEKKFKEWLENAKNKPRPTAKSYGYASGKLTGFYSGNSYPEPTFYNPIPWKPIHMPPPKEARSGSGKKSKRPATSQSLTSSSLAVHKAKSSLCLGTLCQIQR", "length": 368 }, "evidence": [ { "id": "A0A4X1SXC4", "url": "https://omabrowser.org/oma/group/A0A4X1SXC4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3UI66-1", "protein_name": "Coiled-coil domain-containing protein 34", "gene_name": "Ccdc34", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRAAGPWRAASPAPCTRYLARCKPGFRPSSSFVVDLLVDSGDPGLEDVALTECLSPPSLSCSNSTLSLLSPLGHQSFPFGADDSEGEDEEALDEDARESESKVESLEGIEFQQRSSCEVESQDKQEKLVLLQHGSLTPWEMWFVGKEKEERGRLQQKFLEELNQQIEKRKEMEEREKRKIIAEVKHKEWVQKKNKQERKEREQKINKEMEEKEAKKREKEHLQEKAKEKYQEWLKKKKAEEYEKKKKEKEKEKQRQAELQEKKEIAEKKFKEWLENAKNKPRPAAKSYGYSSGKLTGFYSGNSYPEPTFYNPIPWKPIHMPPPKEAKSGPGKKSKRHAASQPLPSSSLAVHNAKSSLCLGALCRGQR", "length": 367 }, "evidence": [ { "id": "A0A4X1SXC4", "url": "https://omabrowser.org/oma/group/A0A4X1SXC4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96HJ3-1", "protein_name": "Coiled-coil domain-containing protein 34", "gene_name": "CCDC34", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWAAGRWGPTFPSSYAGFSADCRPRSRPSSDSCSVPMTGARGQGLEVVRSPSPPLPLSCSNSTRSLLSPLGHQSFQFDEDDGDGEDEEDVDDEEDVDEDAHDSEAKVASLRGMELQGCASTQVESENNQEEQKQVRLPESRLTPWEVWFIGKEKEERDRLQLKALEELNQQLEKRKEMEEREKRKIIAEEKHKEWVQKKNEQKRKEREQKINKEMEEKAAKELEKEYLQEKAKEKYQEWLKKKNAEECERKKKEKEKEKQQQAEIQEKKEIAEKKFQEWLENAKHKPRPAAKSYGYANGKLTGFYSGNSYPEPAFYNPIPWKPIHMPPPKEAKDLSGRKSKRPVISQPHKSSSLVIHKARSNLCLGTLCRIQR", "length": 373 }, "evidence": [ { "id": "A0A4X1SXC4", "url": "https://omabrowser.org/oma/group/A0A4X1SXC4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "sperm end piece", "id": "GO:0097229", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097229", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SXC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SXC4" } ], "pmid": "" }, { "name": "sperm principal piece", "id": "GO:0097228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097228", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SXC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SXC4" } ], "pmid": "" }, { "name": "sperm midpiece", "id": "GO:0097225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097225", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SXC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SXC4" } ], "pmid": "" }, { "name": "sperm head-tail coupling apparatus", "id": "GO:0120212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120212", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SXC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SXC4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SXC4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SXC4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1SXC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SXC4" }, { "id": "PF13904", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13904" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Coiled-coil", "eco_id": "ECO_0000259", "start_pos": 136, "end_pos": 315, "start_aa": "Leu", "end_aa": "Trp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 61, "end_pos": 63 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1SY37-1", "uniprot_ac": "A0A4X1SY37", "uniprot_id": "A0A4X1SY37_PIG", "mass": { "chemical_mass": 22297.0, "monoisotopic_mass": 22297.0 }, "refseq": { "ac": "XP_003132527", "name": "transmembrane 4 L6 family member 18", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132527" }, "gene_names": [ { "name": "TM4SF18", "type": "recommended", "evidence": [ { "id": "A0A4X1SY37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SY37" } ] }, { "name": "TM4SF18", "type": "synonym", "evidence": [ { "id": "XP_003132527", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132527" } ] } ], "protein_names": [ { "name": "Transmembrane 4 L six family member 18", "type": "synonym", "evidence": [ { "id": "A0A4X1SY37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SY37/entry#names_and_taxonomy" } ] }, { "name": "transmembrane 4 L6 family member 18", "type": "synonym", "evidence": [ { "id": "XP_003132527", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132527" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SY37", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SY37" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TM4SF18", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SY37", "locus": { "chromosome": "13", "start_pos": 89527710, "end_pos": 89549446, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011701", "url": "https://www.ensembl.org/id/ENSSSCG00000011701" } ] } } ], "crossref": [ { "id": "A0A4X1SY37", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SY37", "database": "AlphaFoldDB", "categories": [] }, { "id": "100522214", "url": "https://www.ncbi.nlm.nih.gov/gene/100522214", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008661", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008661", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522214", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522214", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WDYIFKD", "url": "https://omabrowser.org/oma/group/WDYIFKD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1SY37", "url": "https://www.orthodb.org/?gene=A0A4X1SY37", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14198", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14198", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14198:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14198:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05805", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05805", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132527", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132527", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1SY37", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SY37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SY37-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SY37-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSRKCGCCLSSLLIPLALWSIIVNILLYFPNGQMSYASSNKLTNYVWYFEGLCFSGIMMLIVAAVLLVLENDNNYKCCQSENCSKKYMILMSMIFSALGIAFSGYCLVISALGLLQGPYCRTLDGWEYAFEGTAGRFLTDSSTWSQCLEPAHVVEWNIILFSILIALSGLQVIVCLIRVVIQLFKILCGTYSVIIQPGII", "length": 201, "header": "tr|A0A4X1SY37-1|A0A4X1SY37_PIG Isoform 1 of Transmembrane 4 L six family member 18 OS=Sus scrofa OX=9823 GN=TM4SF18 PE=3 SV=1 CANONICAL=A0A4X1SY37-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SY37-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SY37/entry#A0A4X1SY37-1", "sequence": { "sequence": "MGSRKCGCCLSSLLIPLALWSIIVNILLYFPNGQMSYASSNKLTNYVWYFEGLCFSGIMMLIVAAVLLVLENDNNYKCCQSENCSKKYMILMSMIFSALGIAFSGYCLVISALGLLQGPYCRTLDGWEYAFEGTAGRFLTDSSTWSQCLEPAHVVEWNIILFSILIALSGLQVIVCLIRVVIQLFKILCGTYSVIIQPGII", "length": 201, "header": "tr|A0A4X1SY37-1|A0A4X1SY37_PIG Isoform 1 of Transmembrane 4 L six family member 18 OS=Sus scrofa OX=9823 GN=TM4SF18 PE=3 SV=1 CANONICAL=A0A4X1SY37-1" }, "locus": { "chromosome": "13", "start_pos": 89549159, "end_pos": 89528223, "strand": 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339, "header": "tr|A0A4X1SYA1-1|A0A4X1SYA1_PIG Isoform 1 of Centromere protein N OS=Sus scrofa OX=9823 GN=CENPN PE=3 SV=1 CANONICAL=A0A4X1SYA1-1" }, "locus": { "chromosome": "6", "start_pos": 7250025, "end_pos": 7228525, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066131.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066131.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055873.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055873.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson 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"monoisotopic_mass": 52684.0 }, "refseq": {}, "gene_names": [ { "name": "TEX55", "type": "recommended", "evidence": [ { "id": "A0A4X1SZZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SZZ2" } ] } ], "protein_names": [ { "name": "Testis expressed 55", "type": "synonym", "evidence": [ { "id": "A0A4X1SZZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SZZ2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SZZ2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SZZ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TEX55", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SZZ2", "locus": {} } ], "crossref": [ { "id": "A0A4X1SZZ2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SZZ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd22975", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22975", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR040760", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040760", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QPCKFEP", "url": "https://omabrowser.org/oma/group/QPCKFEP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47110", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47110", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47110:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47110:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17819", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17819", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1SZZ2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SZZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SZZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SZZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEPPEEAPAESLEIENTGEYPNNSHTDGQEDNGQKQDDVEADYQMDHRAADLAGQIASGLADHKVYEHTGERTSDRADLRASNHTNVADRRASDRVDRKMSEQMDSKASSQADGDEQAEVQMSALPEQHTSEQIDYRMSSPTEKRASEKIDPKKSAPSVQRASQQSDHRMSLPADQRTSQQIESRLSGLVEQKTSEQIGHISSDQVKPRTSVKIYHKVLDQATKPAEYQAADPAYHLAIDEADYSESGQVEDLMGEEDDYADDNLLDYGEYSQSDDRIFNQFGYSKEDQEEDFRVQPCKFEPSERDSDESKASLETDTESIMDLRSFMPFDQRLSRNFYVQDQAYSRRFPSISSKVDYIISKEKIRPMDIRPTEDISEYQERRNSQEYNQFYRKPFPPMVYEDPYQVSLRYMEKHHILQIFQITENLVYEKPEDPLSFMLSQVQEMIQNREKCET", "length": 456, "header": "tr|A0A4X1SZZ2-1|A0A4X1SZZ2_PIG Isoform 1 of Testis expressed 55 OS=Sus scrofa OX=9823 GN=TEX55 PE=1 SV=1 CANONICAL=A0A4X1SZZ2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SZZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SZZ2/entry#A0A4X1SZZ2-1", "sequence": { "sequence": "MEEPPEEAPAESLEIENTGEYPNNSHTDGQEDNGQKQDDVEADYQMDHRAADLAGQIASGLADHKVYEHTGERTSDRADLRASNHTNVADRRASDRVDRKMSEQMDSKASSQADGDEQAEVQMSALPEQHTSEQIDYRMSSPTEKRASEKIDPKKSAPSVQRASQQSDHRMSLPADQRTSQQIESRLSGLVEQKTSEQIGHISSDQVKPRTSVKIYHKVLDQATKPAEYQAADPAYHLAIDEADYSESGQVEDLMGEEDDYADDNLLDYGEYSQSDDRIFNQFGYSKEDQEEDFRVQPCKFEPSERDSDESKASLETDTESIMDLRSFMPFDQRLSRNFYVQDQAYSRRFPSISSKVDYIISKEKIRPMDIRPTEDISEYQERRNSQEYNQFYRKPFPPMVYEDPYQVSLRYMEKHHILQIFQITENLVYEKPEDPLSFMLSQVQEMIQNREKCET", "length": 456, "header": "tr|A0A4X1SZZ2-1|A0A4X1SZZ2_PIG Isoform 1 of Testis expressed 55 OS=Sus scrofa OX=9823 GN=TEX55 PE=1 SV=1 CANONICAL=A0A4X1SZZ2-1" }, "locus": { "chromosome": "13", "start_pos": 141068691, "end_pos": 141049101, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013028.3", "url": "https://www.ensembl.org/id/ENSSSCT00000013028.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012686.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012686.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SZZ2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SZZ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HQV7-1", "protein_name": "Testis-specific expressed protein 55", "gene_name": "Tex55", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDEPPQEAPNGSLDNKDTAQSPNNQKTYIEEGAGQDPHTGSENTGVGSSEQTSDKASSQTANEGSGWTDPRTSEEASQPSEHRGTSQQIDRRSSGQTERKTSETYNQQLPSLFEGKAYEKTDDRASLPFGGKAFEQTDQGTWEFGDQTSSDQADYRTSGRSQYQVYNEVDYLPEDFSGQHRFSGDQERDYRDYVRMKRDAQMADYRSYYKTLAQTENRSLSEIVDNKEVREADFKIQPCTFEVSQTDLRSKVSASWETESAATVQGYKPPEAEFTTDTQSSYGKLPSITTKVYYSSSQEKAQTTELPTDVVAEFEQRKSSQRQSEDSKRLFPPIVFEDPYQVALRYMEKHNILQIFQQITENLVYEKPDDPLDFMLGQVQDMIRHRDQHRII", "length": 392 }, "evidence": [ { "id": "A0A4X1SZZ2", "url": "https://omabrowser.org/oma/group/A0A4X1SZZ2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I5ZU82-1", "protein_name": "Testis expressed 55", "gene_name": "Tex55", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDEPPLEVPDESLNHENADQTPDNQKTNTEEAGQVLHRGSEHAGVGSSEPTGDKVSGQGANAGYRQATRRTSEEAEQRSSQPTEQRLPGLVERRASQPAERRLSERRTSQPPSHPLPSLSEGKTSERIDGQVSLPSGGRSSEQADPGSSEQDDLSSTDETYYASGKSQRQTDYWFEDPSNPHRLSEEIERDITQVRRTIENHSGYRSYYKTLARTENQSLTDIHDIREAGQRVQPCTFEDNETDIPSKVSTADETESTTTVQAYTPYDTEIMTDTQSSREKLPSITNKVYYPSSPEKIRTTEFTADITTELEQRRSSQKYSQSYRGRFPLIVFDDPYQVALRYMEKHSVLQIFQQITEKLVYEMPDDPLRFMLDQVCTGRGSHPSFLVVGELHVCSQMNSSRSS", "length": 404 }, "evidence": [ { "id": "A0A4X1SZZ2", "url": "https://omabrowser.org/oma/group/A0A4X1SZZ2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6X8Z9-1", "protein_name": "Testis-specific expressed protein 55", "gene_name": "Tex55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEPPDESLNHENTTRAPDNEKNNIEGAGQALHRGSEHAGVGSSEPTGDKVSGQANAGSRQTGRRTSEEAEQRSSQPTEHRLPGHAERRASQQAERRLSERRTSQPPNQQLPSHSERKTSGKIDGQESLLSEQTDQETSEFDDLIPSASTDYLSARSQQQEYNQHGYWTEDSSDPHRLSEDLEKDYTRVKHITEKQAGYRSYYKTLAHIESRTLTDTNDYRETGQRLQPCTFEDSEAELPSKVSTTEETESATTIQAYNTQDTELTTSTSHEKLPSITTKVYYSSSPEKIQTTEYTSDTTPVFDQGRSSQRSSQSSRWRFPPIVFEDPYHVALRYVEKHNILHIFQQITENLVYERPDDPLYFMLDQVQNMIKHRDERQSD", "length": 381 }, "evidence": [ { "id": "A0A4X1SZZ2", "url": "https://omabrowser.org/oma/group/A0A4X1SZZ2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96M34-1", "protein_name": "Testis-specific expressed protein 55", "gene_name": "TEX55", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"categories": [] }, { "id": "cd08616", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08616", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522405", "url": "https://www.ncbi.nlm.nih.gov/gene/100522405", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522405", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522405", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ALPAMMH", "url": "https://omabrowser.org/oma/group/ALPAMMH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1T0H4", "url": "https://www.orthodb.org/?gene=A0A4X1T0H4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13593", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13593", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13593:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13593:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00388", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00388", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003133962", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133962", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1T0H4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T0H4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T0H4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T0H4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0Z1I8", "url": "https://www.uniprot.org/uniprotkb/A0A8D0Z1I8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0Z1I8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0Z1I8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSQGKNELKFADWMATLPETIHSIPLTNLAIPGSHDSFSFYIDEASPVGPEQPETVQNFVSVFGTVAKKLMRKWLATQTMNFTGQLGAGIRYFDLRISTKPRDPDNELYFAHGLFSAKVNEGLEEINAFLTDHHKEVVFLDFNHFYGMQKYHHEKLVQMLKDIYGNKMCPAIFAQEVSLKYLWEKDYQVLVFYHSPVALEVPFLWPGQMMPAPWANTTDPEKLIQFLQASITERRKKGSFFISQVVLTPKASTVVKGVASGLRETITERALPAMMQWVRTQKPGESGINIVTADFVELGDFISTVIKLNYEFDEGEANT", "length": 321, "header": "tr|A0A4X1T0H4-1|A0A4X1T0H4_PIG Isoform 1 of Phosphatidylinositol specific phospholipase C X domain containing 3 OS=Sus scrofa OX=9823 GN=PLCXD3 PE=1 SV=1 CANONICAL=A0A4X1T0H4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1T0H4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T0H4/entry#A0A4X1T0H4-1", "sequence": { "sequence": "MASSQGKNELKFADWMATLPETIHSIPLTNLAIPGSHDSFSFYIDEASPVGPEQPETVQNFVSVFGTVAKKLMRKWLATQTMNFTGQLGAGIRYFDLRISTKPRDPDNELYFAHGLFSAKVNEGLEEINAFLTDHHKEVVFLDFNHFYGMQKYHHEKLVQMLKDIYGNKMCPAIFAQEVSLKYLWEKDYQVLVFYHSPVALEVPFLWPGQMMPAPWANTTDPEKLIQFLQASITERRKKGSFFISQVVLTPKASTVVKGVASGLRETITERALPAMMQWVRTQKPGESGINIVTADFVELGDFISTVIKLNYEFDEGEANT", "length": 321, "header": "tr|A0A4X1T0H4-1|A0A4X1T0H4_PIG Isoform 1 of Phosphatidylinositol specific phospholipase C X domain containing 3 OS=Sus scrofa OX=9823 GN=PLCXD3 PE=1 SV=1 CANONICAL=A0A4X1T0H4-1" }, "locus": { "chromosome": "16", "start_pos": 26346894, "end_pos": 26181983, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041634.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041634.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041727.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041727.1" } ] } }, { "isoform_ac": "A0A8D0Z1I8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T0H4/entry#A0A8D0Z1I8-1", "sequence": { "sequence": "MASSQGKNELKFADWMATLPETIHSIPLTNLAIPGSHDSFSFYIDEASPVGPEQPETVQNFVSVFGTVAKKLMRKWLATQTMNFTGQLGAGIRYFDLRISTKPRDPDNELYFAHGLFSAKVNEGLEEINAFLTDHHKEVVFLDFNHFYGMQKYHHEKLVQMLKDIYGNKMCPAIFAQEVSLKYLWEKDYQVLVFYHSPVALEVPFLWPGQMMPAPWANTTDPEKLIQFLQASITERRKKGSFFISQVVLTPKASTVVKGVASGLRETITESSSGGWKSELKVSARLVNSQRL", "length": 292, "header": "tr|A0A8D0Z1I8-1|A0A4X1T0H4_PIG Computationally mapped isoform of Phosphatidylinositol specific phospholipase C X domain containing 3 OS=Sus scrofa OX=9823 GN=PLCXD3 PE=1 SV=1 CANONICAL=A0A4X1T0H4-1" }, "locus": { "chromosome": "16", "start_pos": 26346894, "end_pos": 26169084, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068722.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068722.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068648.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068648.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0Z1I8", "url": "https://www.uniprot.org/uniprotkb/A0A8D0Z1I8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522405", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522405", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TQL7-1", "protein_name": "Phosphatidylinositol specific phospholipase C X domain containing 3", "gene_name": "PLCXD3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASSQGKNELKFADWMATLPESIHSIPLTNLAIPGSHDSFSFYIDEASPVGPEQPETVQNFVSVFGTVAKKLMRKWLATQTMNFTGQLGAGIRYFDLRISTKPRDPDNELYFAHGLFSAKVNEGLEEINAFLTDHHKEVVFLDFNHFYGMQKYHHEKLVQMLKDIYGNKMCPAIFAQEVSLKYLWEKDYQVLVFYHSPVALEVPFLWPGQMMPAPWANTTDPEKLIQFLQASITERRKKGSFFISQVVLTPKASTVVKGVASGLRETITERALPAMMQWVRTQKPGESGINIVTADFVELGDFISTVIKLNYVFEEGEANT", "length": 321 }, "evidence": [ { "id": "A0A4X1T0H4", "url": "https://omabrowser.org/oma/group/A0A4X1T0H4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A1H2-1", "protein_name": "Phosphatidylinositol-specific phospholipase C, X domain containing 3", "gene_name": "Plcxd3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASSQGKNELKFADWMATLPESIHSIPLTNLAIPGSHDSFSFYIDEASPVGPEQPETVQNFVSVFGTVAKKLMRKWLATQTMSFTGQLGAGIRYFDLRISTKPRDPDNELYFAHGLFSAKVNEGLEEINAFLTDHHKEVVFLDFNHFYGMQKYHHEKLVQMLKDIYGNKMCPAIFAQEVSLKYLWEKSYQVLVFYHSPVALEVPFLWPGQMMPAPWANTTDPEKLIQFLQASITERRKKGSFFISQVVLTPKASTVVKGVASGLRETITERALPAMMQWIRTQKPGESGINIVTADFVELGDFISTVIKLNYVFDEGEANT", "length": 321 }, "evidence": [ { "id": "A0A4X1T0H4", "url": "https://omabrowser.org/oma/group/A0A4X1T0H4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q58EK3-1", "protein_name": "PI-PLC X domain-containing protein 3", "gene_name": "plcxd3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MASSQGKSELRYADWMSSLPDTLHGIPLTNLAIPGSHDSFSFYIDEASPVGPEQPETVQNFVSVFGTVAKKLMRKWLATQTMNFTSQLEAGIRFFDLRISTKPRDPDNELYFAHGLFSATVREGLEQISTFLASHAREVVFLDFNHFYGVQNLHHEKLVQMLRTVFGDRLCPVVFAQEVSLKYLWEKEYQVLVFYHNPMALEVPFLWPGQMMPAPWANTTDPEKLILFLQASVKDRRRKGTFFVSQVVLTPKASTVMKGVTSGLRETITERALPSMMQWIRSQRPGESGVNIITADFVELGEFISAVITLNYYLDDEEENAT", "length": 322 }, "evidence": [ { "id": "A0A4X1T0H4", "url": "https://omabrowser.org/oma/group/A0A4X1T0H4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q63HM9-1", "protein_name": "PI-PLC X domain-containing protein 3", "gene_name": "PLCXD3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"MASSQGKNELKFADWMATLPESIHSIPLTNLAIPGSHDSFSFYIDEASPVGPEQPETVQNFVSVFGTVAKKLMRKWLATQTMSFTGQLGAGIRYFDLRISTKPRDPDNELYFAHGLFSAKVNEGLEEINAFLTDHHKEVVFLDFNHFYGMQKYHHEKLVQMLKNIYGNKMCPAIFAQEVSLKYLWEKDYQVLVFYHSPVALEVPFLWPGQMMPAPWANTTDPEKLIQFLQASITERRKKGSFFISQVVLTPKASTVVKGVASGLRETITERALPAMMQWIRTQKPGESGINIVTADFVELGDFISTVIKLNYVFNEGEANT", "length": 321 }, "evidence": [ { "id": "A0A4X1T0H4", "url": "https://omabrowser.org/oma/group/A0A4X1T0H4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VIP3-1", "protein_name": "Phosphatidylinositol-specific phospholipase C X domain-containing protein", "gene_name": "38B.13", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": 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Activates the ATPase activity of HSP90AA1 leading to increase in its chaperone activity. Competes with the inhibitory co-chaperone FNIP1 for binding to HSP90AA1, thereby providing a reciprocal regulatory mechanism for chaperoning of client proteins. 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"url": "https://www.ebi.ac.uk/interpro/entry/IPR023393", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036338", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036338", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100626607", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626607", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HIAMKWR", "url": "https://omabrowser.org/oma/group/HIAMKWR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1T4G7", "url": "https://www.orthodb.org/?gene=A0A4X1T4G7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13009", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13009", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13009:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13009:SF7", "database": 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"MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTEVNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEISVSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPALKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFTHAPAMLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKSWPEGHFATITLTFIDKNGETELCMEGRGVPAPEEERTRQGWQRYYFEGIKQTFGYGARLF", "length": 338, "header": "tr|A0A4X1T4G7-1|A0A4X1T4G7_PIG Isoform 1 of Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Sus scrofa OX=9823 GN=AHSA1 PE=1 SV=1 CANONICAL=A0A4X1T4G7-1" }, "locus": { "chromosome": "7", "start_pos": 100520125, "end_pos": 100510755, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002675.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002675.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002608.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002608.2" } ] } }, { "isoform_ac": "A0A5G2RCN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T4G7/entry#A0A5G2RCN0-1", "sequence": { "sequence": "MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTEVNKLDGEASINNRKGKLIFFYEWSIKLNWTGKSVLGFDRG", "length": 100, "header": "tr|A0A5G2RCN0-1|A0A4X1T4G7_PIG Computationally mapped isoform of Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Sus scrofa OX=9823 GN=AHSA1 PE=1 SV=1 CANONICAL=A0A4X1T4G7-1" }, "locus": { "chromosome": "7", "start_pos": 100512693, "end_pos": 100510755, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072873.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072873.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072022.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072022.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RCN0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCN0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100626607", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626607", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B0BN63-1", "protein_name": "Activator of 90 kDa heat shock 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} ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T525", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T525" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C12orf76", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T525", "locus": { "chromosome": "14", "start_pos": 40950879, "end_pos": 40943927, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040422", "url": "https://www.ensembl.org/id/ENSSSCG00000040422" } ] } } ], "crossref": [ { "id": "A0A4X1T525", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1T525", "database": "AlphaFoldDB", "categories": [] }, { "id": "ICVYKPL", "url": "https://omabrowser.org/oma/group/ICVYKPL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1T525", "url": 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"strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057137.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057137.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080360.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080360.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., 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"categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1T616", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T616", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T616-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T616-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1IP74", "url": 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"chromosome": "6", "start_pos": 4077081, "end_pos": 4067518, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055545.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055545.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040128.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040128.1" } ] } }, { "isoform_ac": "A0A8D1IP74-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T616/entry#A0A8D1IP74-1", "sequence": { "sequence": "IMEGSRQTRVSRPYKISESSKVYRWADHSTTVLQRLNEQRLRGLFCDVVLVADEQRVPAHRNLLAVCSDYFNSMFTLGMREAFQKEVELVGASYIGLKAVVDFLYGGELVLDGGNIDYILETAHLLQIWTAVDFCCEYLEQEVSEDNYLYLQELASIYSLKRLDAFIDGFILSRFGTLSFTPDFLQSISMQKLCLYLGSSDVQRECEHDLLQAALQWLTQQPEREAHAFEVLENIHFPLIPKNDLLHRVKPAVCALLPREANCEGFIEEAVRYHNSLAAQPVMQTKRTALRTNQERLLFVGGEVSERCLELSDDTCYLDAQNEQWVKETPLPARRSHHCVAVLGGFIFIAGGSFSRDNGGDAASNLLYRFTYGHAGTIYKDFVYISGGHDYQIGPYRKNLLCYDHRTDVWEERRPMPTARGWHSMCSLGDSIYSIGGSDDSIESMERFDVLGVEAYSPQCNQWTRVAPLLQANSESGVAVWQGRIYILGGYSWENTAFSKTVQVYDREKDKWSKGTDLPKAIAGVSACVCALTPRLEDKKKKGKGKRPQDRGQ", "length": 553, "header": "tr|A0A8D1IP74-1|A0A4X1T616_PIG Computationally mapped isoform of Kelch-like protein 36 OS=Sus scrofa OX=9823 GN=KLHL36 PE=4 SV=1 CANONICAL=A0A4X1T616-1" }, "locus": { "chromosome": "6", "start_pos": 4077081, "end_pos": 4067518, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075944.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075944.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069187.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069187.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1IP74", "url": "https://www.uniprot.org/uniprotkb/A0A8D1IP74" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3GRX3-1", "protein_name": "Kelch-like protein 36", "gene_name": "Klhl36", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEASKQIRVSRPYKISESSKVYHWADHSTTVLQRLNEQRLHGLFCDVVLVVEEQQVPAHRNLLAVCSDYFNSMFTLGMREAFQKEVELVGTSYVGLKAVVDFLYSSELELDGNNIDYILETAHLLQIWTVVDFCCEYLEQEVSEDNYLYLQELASIYSLKRLDAFIDRFVLNHFSTLSFTPDFLQTVSVQKLCVYLSSGQIQHKWEYDLLQAALQWLTQQPEREVHICRVLENIRFPLFPEDILLQRVKLAMCSLLPSEANCEGFLEEALHYHNSLVAQPVLQTKRTVLRSEECLLFVGGEVSERCLELSDDTCYLDTKSEQWVKETSLPARRSHHCVAVLGGFIFIAGGSFSRDNGGDAASNLLYRYDPRRKQWIKVASMNQRRVDFYLASIEDMLVAVGGRNENGALSSVETYSPKTNSWTYVAGLPRFTYGHAGTIYKDFVYISGGHDYQIGPYRKNLLCYDHRTDVWEEKRPMTTARGWHSMCSLGDSIYSIGGSDDHMESMERFDVLGVEAYSPQCNQWTRVAPLLQANSESGVAVWQGRIYILGGYSWESTAFSRAVQVYDHEADRWSRGPDLPNAIAGVSACVCALNPRLEEKKKRSKDKRQDRGQ", "length": 613 }, "evidence": [ { "id": "A0A4X1T616", "url": "https://omabrowser.org/oma/group/A0A4X1T616/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3B7M1-1", "protein_name": "Kelch-like protein 36", "gene_name": "KLHL36", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MMEGSRQTRVSRPYKISESSKVYRWAEHSGTVLQRLNEQRLRGLFCDVVLVADEQRLPAHRNLLAVCSDYFNSMFTLGMREAFQKEVELIGASYIGLKAVVDFLYGGELVLDGGNIDYVLETAHLLQIWTAVDFCCEYLEQEVSEDNYLYLQELASIYSLKRLDAFIDSFILSRFGTLSFTPAFLQNISMQKLCAYLGSSEVQRECEHDLLQAALQWLTQQPEREAHAYQVLENIHFPLIPKNDLLHRVKPAVCSLLPREANCEGFIEEAVRYHNSLAAQPVMQTKRTALRTTQECLLFVGGEVSERCLELSDDTCYLDAQSEQWVKETPLPARRSHHCVAVLGGFIFIAGGSFSRDNGGDAASNLLYRYDPRCKQWIKVASMNQRRVDFYLASIEDMLVAVGGRNENGALSSVETYSPKTDSWSYVAGLPRFTYGHAGTIYKDFVYISGGHDYQIGPYRKNLLCYDHRTDVWEERRPMSTARGWHSMCSLGDSIYSIGGSDDSLESMERFDVLGVEAYSPQCNQWTRVAPLLHANSESGVAVWEGRIYILGGYSWENTAFSKTVQVYDRDKDKWSEGTELPKAIAGVSACVCALKPRLEDKKKKGKGKRPQDHGQ", "length": 616 }, "evidence": [ { "id": "A0A4X1T616", "url": "https://omabrowser.org/oma/group/A0A4X1T616/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q66HD2-1", "protein_name": "Kelch-like protein 36", "gene_name": "Klhl36", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEASKQMRVSRPYKISESSKVYHWPGHSTTVLQRLNEQRLHGLFCDVVLVVEEQQVPAHRNLLAVCSDYFNSMFTLGMREAFQKEVELVGTSYVGLKAVVDFLYSSELELDGSNIDYILETAHLLQIWTVVDFCCEYLEQEVSEDNYLYLQELASIYSLKRLDAFIDSFVLNHFSTLSFTPDFLQTVSVQKLCIYLSSGQVQHTWEYDLLQAALQWLTQQPEREVHTCRVLENIRFPLFPEDILLQRVKLAMCSLLPSEANGEGFVEEAMHYHNSLVAQPVLQTKRTLLRSEECLLFVGGEVSERCLELSDDTCYLDTKNEQWVKETSLPARRSHHCVAVLGGFIFVAGGSFSRDNGGNAASNLLYRYDPRRKQWIKVASMNQRRVDFYLASIEDMLVAVGGRNENGALSSVETYSPKTNSWTYVAGLPRFTYGHAGTIYKDFVYISGGHDYQIGPYRKNLLCYDHRTDVWEERRPMTTARGWHSMCSLGDSIYSIGGSDDHMESMERFDVLGVEAYSPQCNQWTRVAPLLQANSESGVAVWQGRIYILGGYSWESTAFSRAVQVYDREANRWSRGPDLPNAIAGVSACVCALNPRLEEKKKKNKDKRQDRGQ", "length": 613 }, "evidence": [ { "id": "A0A4X1T616", "url": "https://omabrowser.org/oma/group/A0A4X1T616/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8N4N3-1", "protein_name": "Kelch-like protein 36", "gene_name": "KLHL36", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMEGSRQTRVSRPYKISESSKVYRWADHSSTVLQRLNEQRLRGLFCDVVLVADEQRVPAHRNLLAVCSDYFNSMFTIGMREAFQKEVELIGASYIGLKAVVDFLYGGELVLDGGNIDYVLETAHLLQIWTVVDFCCEYLEQEVSEDNYLYLQELASIYSLKRLDAFIDGFILNHFGTLSFTPDFLQNVSMQKLCVYLSSSEVQRECEHDLLQAALQWLTQQPEREAHARQVLENIHFPLIPKNDLLHRVKPAVCSLLPKEANCEGFIEEAVRYHNNLAAQPVMQTKRTALRTNQERLLFVGGEVSERCLELSDDTCYLDAKSEQWVKETPLPARRSHHCVAVLGGFIFIAGGSFSRDNGGDAASNLLYRYDPRCKQWIKVASMNQRRVDFYLASIEDMLVAIGGRNENGALSSVETYSPKTDSWSYVAGLPRFTYGHAGTIYKDFVYISGGHDYQIGPYRKNLLCYDHRTDVWEERRPMTTARGWHSMCSLGDSIYSIGGSDDNIESMERFDVLGVEAYSPQCNQWTRVAPLLHANSESGVAVWEGRIYILGGYSWENTAFSKTVQVYDREADKWSRGVDLPKAIAGGSACVCALEPRPEDKKKKGKGKRHQDRGQ", "length": 616 }, "evidence": [ { "id": "A0A4X1T616", "url": "https://omabrowser.org/oma/group/A0A4X1T616/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R124-1", "protein_name": "Kelch-like protein 36", "gene_name": "Klhl36", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEASKQMRVSRPYKISESSKVYHWPDHSTAVLQRLNEQRLHGLFCDVVLVVEEQQVPAHRNLLAVCSDYFNSMFTLGMREAFQKEVELVGTSYVGLKAVVDFLYSSELELDGSNIDYILETAHLLQIWTVVDFCCEYLEQEVSEDNYLYLQELASIYSLKRLDAFIDSFVLSHFSTLSFTPDFLQSISVQKLCVYLSSGQVQHKWEYDLLQVALQWLTQQPEREVHTRRVLENIRFPLFPEDILLQRVKLAMCSLLPSEANGEGFVEEAMHYHNSLVAQPVLQTKRTLLRSEECLLFVGGEVSERCLELSDDTCYLDTKNEQWVKETSLPARRSHHCVAVLGGFIFIAGGSFSRDNGGNAASNLLYRYDPRRKQWIKVASMNQRRVDFYLASIEDMLVAVGGRNENGALSSVETYSPKTNSWTYVAGLPRFTYGHAGTIYKDFVYISGGHDYQIGPYRKNLLCYDHRTDVWEERRPMTTARGWHSMCSLGDSIYSIGGSDDHMESMERFDVLGVEAYSPQCNQWTRVAPLLQANSESGVAVWQGRIYILGGYSWESTAFSRAVQVYDSEANRWSRGPDLPNAIAGVSACVCALNPRLEEKKKRNKDKCQDRGQ", "length": 613 }, "evidence": [ { "id": "A0A4X1T616", "url": "https://omabrowser.org/oma/group/A0A4X1T616/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T616", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T616" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T616", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T616" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "cullin family protein binding", "id": "GO:0097602", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097602", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T616", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T616" } ], "pmid": "" }, { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T616", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T616" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Cul3-RING ubiquitin ligase complex", "id": "GO:0031463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031463", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T616", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T616" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1T616", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T616" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 46, "end_pos": 113, "start_aa": "Cys", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1T798-1", "uniprot_ac": "A0A4X1T798", "uniprot_id": "A0A4X1T798_PIG", "mass": { "chemical_mass": 25727.0, "monoisotopic_mass": 25727.0 }, "refseq": { "ac": "XP_001928719", "name": "calcium-binding protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928719" }, "gene_names": [ { "name": "CABP1", "type": "recommended", "evidence": [ { "id": "A0A4X1T798", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T798" } ] }, { "name": "CABP1", "type": "synonym", "evidence": [ { "id": "XP_001928719", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928719" } ] } ], "protein_names": [ { "name": "Calcium binding protein 1", "type": "synonym", "evidence": [ { "id": "A0A4X1T798", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T798/entry#names_and_taxonomy" } ] }, { "name": "calcium-binding protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_001928719", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928719" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T798", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T798" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CABP1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T798", "locus": { "chromosome": "14", "start_pos": 40587970, "end_pos": 40563159, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000056057", "url": "https://www.ensembl.org/id/ENSSSCG00000056057" } ] } } ], "crossref": [ { "id": "A0A4X1T798", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1T798", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009914", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009914", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157460", "url": "https://www.ncbi.nlm.nih.gov/gene/100157460", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043582", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043582", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157460", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157460", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FEEENNC", "url": "https://omabrowser.org/oma/group/FEEENNC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1T798", "url": "https://www.orthodb.org/?gene=A0A4X1T798", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RJI3", "url": "https://www.orthodb.org/?gene=F1RJI3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45917", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45917", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45917:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45917:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001928719", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928719", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1T6U8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6U8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T6U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6U8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T798", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T798", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T798-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T798-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJI3", "url": "https://www.uniprot.org/uniprotkb/F1RJI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJI3-1", "url": "https://www.uniprot.org/uniprotkb/F1RJI3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNCVKSPLRNLSRKMRQEETSYTVVQTSEEGLAASGELPGPLLMLAQNCAVMHNLLGPACIFLRKGFAENRQPDRSLRPEEIEELREAFKEFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMSR", "length": 226, "header": "tr|A0A4X1T798-1|A0A4X1T798_PIG Isoform 1 of Calcium binding protein 1 OS=Sus scrofa OX=9823 GN=CABP1 PE=4 SV=1 CANONICAL=A0A4X1T798-1" }, "isoforms": [ { "isoform_ac": "A0A4X1T6U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T798/entry#A0A4X1T6U8-1", "sequence": { "sequence": "MGNCVKSPLRNLSRKDRSLRPEEIEELREAFKEFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMSR", "length": 167, "header": "tr|A0A4X1T6U8-1|A0A4X1T798_PIG Computationally mapped isoform of Calcium binding protein 1 OS=Sus scrofa OX=9823 GN=CABP1 PE=4 SV=1 CANONICAL=A0A4X1T798-1" }, "locus": { "chromosome": "14", "start_pos": 40587538, "end_pos": 40572585, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087207.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087207.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070688.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070688.1" } ] } }, { "isoform_ac": "A0A4X1T798-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T798/entry#A0A4X1T798-1", "sequence": { "sequence": "MGNCVKSPLRNLSRKMRQEETSYTVVQTSEEGLAASGELPGPLLMLAQNCAVMHNLLGPACIFLRKGFAENRQPDRSLRPEEIEELREAFKEFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMSR", "length": 226, "header": "tr|A0A4X1T798-1|A0A4X1T798_PIG Isoform 1 of Calcium binding protein 1 OS=Sus scrofa OX=9823 GN=CABP1 PE=4 SV=1 CANONICAL=A0A4X1T798-1" }, "locus": { "chromosome": "14", "start_pos": 40587538, "end_pos": 40572585, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103671.1", "url": 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"https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9G5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9G5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9G5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9G5" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T9G5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T9G5" } ], "pmid": "" }, { 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CANONICAL=A0A4X1TAU9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TAU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAU9/entry#A0A4X1TAU9-1", "sequence": { "sequence": "MVRRSQRRGAAKWAALRSKAGRGPVEENEDDLESPPSPGDSSYYQDKVDDFHEARSRAALAKGWSEVESGDEEEDGDEEEEVLALDVADEDDEDGESAGDEEEEEEDGGSSVESEAEASVDPSLSWGQRKKVYYDTDYGSKSRGRRSQQEVEEEEREEEEEAQLIQRRLAQTLQEDDFGVTWVTAFAKPAPQVNEAETRVVKDLAKISVKEKLKMLRKESPELLELIDDLKVKLTEMKDELEPLLQLVEQRVIPPGKGSQYLRTKYNLYLNYCSNISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDEKLSSEIRHLLTLKDGAGKKELTLKVKSTKAKPKSVSETSAAAVTDLSDDSDFDEEAALKYYKEIEDRQKLKRKKEENSTEEQALEDQNAKRAITYQIAKNRGLTPRRKKIDRNPRVKHREKFRRAKIRRRGQVREVRREEQRYSGELSGIRAGVKKSIKLK", "length": 474, "header": "tr|A0A4X1TAU9-1|A0A4X1TAU9_PIG Isoform 1 of UTP3 small subunit processome component OS=Sus scrofa OX=9823 GN=UTP3 PE=3 SV=1 CANONICAL=A0A4X1TAU9-1" }, "locus": { "chromosome": "8", "start_pos": 67477520, "end_pos": 67476099, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030261.3", 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"https://www.uniprot.org/uniprotkb/A0A4X1TAU9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2U489-1", "protein_name": "UTP3 small subunit processome component", "gene_name": "UTP3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": 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"MVGRSGRRARGAAKWAAVRAKASRDPADDDGEDLESPPSPGDSSYYQDKVDDFHEARSRAALAKGWSEIESGDEEDGDEEEEVLALDVADEDDEDGESEEGDDDDGGSSVQSETEASVDPSLSWGQRKKLYYDTDYGSKSRGRQSQQEVEEEEREEEAEAQLIQRRLAQALQEDDFGVTWVEAFAKPVPQVNEAETRVVKDLAKVSVKEKLKMLRKESPELLELIDDLKVKLTEMKDELEPLLQLVEQKIIPPGKGSQYLRTKYNLYLNYCSNISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRYMLTLKDGAGKKELNLKAKSMKAKPKSVSETSAAALAVRDLSDDSDFDEEAALKYYKEMEERQKLKRKKEENSTEEQALEDQNAKRAITYQIAKNRGLTPRRKKIDRNPRVKHREKFRKAKIRRRGQVREVRREEQRYTGELSGIRAGVKKSIKLK", "length": 474 }, "evidence": [ { "id": "A0A4X1TAU9", "url": "https://omabrowser.org/oma/group/A0A4X1TAU9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AXX4-1", "protein_name": "Something about silencing protein 10", "gene_name": "Utp3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVKRSRRRGAAQWATVRAKAGRTATDENEDDLGSPPSPGDSSYYQDQVDEFHEARSRAVLAKGWNEVESGEEDDDEEEEVLPLNIDDENDEDGESSEEEEDGEDDDGGSSVQSEAEASVDPSLSWGQRKRLYYDTDYGSKSRGRQSQQEVEEEEREEEEEAQVIQRRLTQALQEDDFGVAWVEAFAKPVPQVDEAETRVVKDLAKVSVKEKLKMLRKESPELLELIEDLKVKLTEVKDELEPLIQLVEKGVIPPGKGSQYLKTKYNLYLNYCANISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKEGAGKKDLNPKAKLTKTKPKSAKQTDVNADLTEEPEFDEAALEFYKEMEDRPELKRKKEENSAEEQALEEQNAKRAITYQIAKNRGLTPRRKKIDRNPRVKHREKFRRAKIRRRGQVREVRREEQRYSGELSGIRAGVKKSIKLK", "length": 470 }, "evidence": [ { "id": "A0A4X1TAU9", "url": "https://omabrowser.org/oma/group/A0A4X1TAU9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8L3P4-1", "protein_name": "Protein THALLO", "gene_name": "THAL", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGKKGGTLKRSSKSTKTRKDIVEDQYDDEIDAFHKQRDIVPLDVNDDTDESDEDDVQPVFDLQGVDDESEEDEDTEDEEEAENGLTAKMIRQKKYLRAKFGDGDDEMADDDKDKEEDKRSTWGGRSGLYHSGDNVDFDILSSDDEDIKAEEEEVIRLRAEQLGSITAADAGLDDDSEEDSDRELTMEEISDKGKQATKSITDKKEKGDKDTHVEEIKKDINSLSKEEQMDVVYSSAPEIVGLLSELNDAVEELESKINPVMNKLKEGEISLNGLARYLEVKQLLLLTYCQSITFYLLLKSEGQPIRDHPVLARLVEIKSLLDKIKELDEELPPGFEESLARSIANGAVQKVVKEDQLTSPVSDSVDRITQDTAKPMKIDNAREEKKKKGEKRKHQNDLVDVQSEEMLKLRAALEGKLRTNGVLGSTVSKSDKAQKRQKLANRKLETFDDYVDDADNSTHNVTADKLTKLVSTKRKPKTISGDDDLPQRDDIGERRRKFELRVLAGAGVKSSEGDGRNKNGAFASDDEDDNDGDNNDMVDNDGESEDEFYKQVKQKQQAKRAAKAEIYSRKPHLMPSSPEHVDGKRHISNQMVSNRGLTRQRNRDLKNPRKKYRKNYEKKVTRRKGQVRDIRKQTGPYAGEARGINPNTSRSIRM", "length": 654 }, "evidence": [ { "id": "A0A4X1TAU9", "url": "https://omabrowser.org/oma/group/A0A4X1TAU9/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9I7W5-1", "protein_name": "Something about silencing protein 10", "gene_name": "Sas10", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDSDGDDYVMSGSDQEYDDEEREILEDLRKQRKKPHDPVQEVLGFSDDDDDDDDDDEEEQQDVAELMRDSDIEGAEDDDRDLPNTMDWGSKRSTYYNTDFVDQDYSSYNAQEEEQARAEEEEAKKIQLRLAKRMSEADFQLDNVEAAPAGSSDDNELSHITKVTSDLAGLSERERRQLMHSESPEFIILTQDFQQHLDEVKNLLKPVLNYVRKHDVPMVPALQYAGLCHTVLTTYCSNVAFYLLLKARRIDVKAHPVIRRLVQLKDLIEELKPRYEEYIRPQLEALLERIEDGDAFTVLDVAQRKAKLQILNKYNDGQQASVSSDDDDNDDDDDAESKEKDLQEEAGEEEEEEDARRGITYQMAKNKGLTPHRKKELRNPRVKHRGKYRKALIRRKGAVRTVRKELQRYGGELSGIKAGVTKSVKFRT", "length": 428 }, "evidence": [ { "id": "A0A4X1TAU9", "url": "https://omabrowser.org/oma/group/A0A4X1TAU9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9JI13-1", "protein_name": "Something about silencing protein 10", "gene_name": "Utp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVKKSRRRGAAQWAAVRAQAGLTATDENEDDLGLPPSPGDSSYYQDQVDEFHEARSRAVLAKGWNEVESGEEDGDEEEEVLPLDIDDGDDEDGESSEEEEVGEDDDGGSSVQSEAEASVDPSLSWGQRKKLYYDTDYGSKSRGRQSQQEVEEEEREEEEEAQIIQRRLAQALQEDDFGVAWVEAFAKPVPQVDEAETRVVKDLAKVSVKEKLKMLKKESPELLELIEDLQAKLTEVKDELEPLLQLVEKGVIPTGRGSEYLKTKYNLYLNYCANISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKDGAVKKEMTPKAKLTKTKPKSVKQAAAVALTDEPDFDGAALKYYKEMEDRQELKRKKEENSAEEQALEEQNAKRAITYQIAKNRGLTPRRKKIDRNPRVKHREKFRKAKIRRRGQVREVRREEQRYSGELSGIRAGVKKSIKLK", "length": 469 }, "evidence": [ { "id": "A0A4X1TAU9", "url": "https://omabrowser.org/oma/group/A0A4X1TAU9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVGRSRRRGAAKWAAVRAKAGPTLTDENGDDLGLPPSPGDTSYYQDQVDDFHEARSRAALAKGWNEVQSGDEEDGEEEEEEVLALDMDDEDDEDGGNAGEEEEEENADDDGGSSVQSEAEASVDPSLSWGQRKKLYYDTDYGSKSRGRQSQQEAEEEEREEEEEAQIIQRRLAQALQEDDFGVAWVEAFAKPVPQVDEAETRVVKDLAKVSVKEKLKMLRKESPELLELIEDLKVKLTEVKDELEPLLELVEQGIIPPGKGSQYLRTKYNLYLNYCSNISFYLILKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTLKDDAVKKELIPKAKSTKPKPKSVSKTSAAACAVTDLSDDSDFDEKAKLKYYKEIEDRQKLKRKKEENSTEEQALEDQNAKRAITYQIAKNRGLTPRRKKIDRNPRVKHREKFRRAKIRRRGQVREVRKEEQRYSGELSGIRAGVKKSIKLK", "length": 479 }, "evidence": [ { "id": "A0A4X1TAU9", "url": "https://omabrowser.org/oma/group/A0A4X1TAU9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TAU9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAU9" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TAU9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAU9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "brain development", "id": "GO:0007420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007420", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TAU9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAU9" } ], "pmid": "" }, { "name": "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000462", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TAU9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAU9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 275, "end_pos": 277, "annotation": "n_glycosylation_sequon" }, { "start_pos": 390, "end_pos": 392, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1TAU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TAU9" }, { "id": "PF09368", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09368" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sas10 C-terminal", "eco_id": "ECO_0000259", "start_pos": 401, "end_pos": 473, "start_aa": "Asn", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 275, "end_pos": 277 }, { "start_pos": 390, "end_pos": 392 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TBC3-1", "uniprot_ac": "A0A4X1TBC3", "uniprot_id": "A0A4X1TBC3_PIG", "mass": { "chemical_mass": 71060.0, "monoisotopic_mass": 71060.0 }, "refseq": { "ac": "XP_013853889", "name": "zinc finger protein 527 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853889" }, "gene_names": [ { "name": "ZNF527", "type": "recommended", "evidence": [ { "id": "A0A4X1TBC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TBC3" } ] }, { "name": "ZNF527", "type": "synonym", "evidence": [ { "id": "XP_013853889", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853889" } ] } ], "protein_names": [ { "name": "Zinc finger protein 527", "type": "synonym", "evidence": [ { "id": "A0A4X1TBC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TBC3/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 527 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013853889", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853889" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1L8Q2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1L8Q2#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TBC3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TBC3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF527", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TBC3", "locus": { "chromosome": "6", "start_pos": 46328233, "end_pos": 46304063, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021741", "url": "https://www.ensembl.org/id/ENSSSCG00000021741" } ] } } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102165184", "url": "https://www.ncbi.nlm.nih.gov/gene/102165184", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102165184", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102165184", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KEPWMVQ", "url": "https://omabrowser.org/oma/group/KEPWMVQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TBC3", "url": "https://www.orthodb.org/?gene=A0A4X1TBC3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8D1L8Q2", "url": "https://www.orthodb.org/?gene=A0A8D1L8Q2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384:SF247", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384:SF247", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013853889", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853889", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TBC3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TBC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TBC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TBC3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1L8Q2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1L8Q2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1L8Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1L8Q2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVGLCKAMSQGLVTFRDVALNFSQEEWEWLDSSQKDLYRDVMLENYRNLVWLGLSISKPNMISLLEQGKEPCMVEREMSDGQYADWESWYEIKALSPKWYIDEEEISQGIIMERLTSYGLECSSFRASWKYEGEFARHQRNEQRHFRQVTTHKEISAMKRDNEYNNSERNVLLKSVLLKQQRVPTVEQVHKFDIYDKMFPPNSVLIGHKRLHAEKESLIGNECEEFNQSTYLSKDAEIPPGGKPYESNDFSNLLSFHSLLTQHRTTHFGKLHHGYNECGDAFSCYSFFAQPQRILNGEKPYVCNDCGKAFSHDFFLSEHQRTHIGEKPYECKECNKAFRQSAHLAQHQRIHTGEKPFACNECGKAFSRYAFLVEHRRIHTGEKPYECKECNKAFRQSAHLNQHQRIHTGEKPYECNQCGKAFSRRIALTLHQRIHTGEKPFRCNECGKTFGYRSHLNQHQRIHTGEKPYECIKCGKFFRTDSQLNRHHRIHTGERPFECSKCGKAFSDALVLIHHKRSHAGEKPYECNKCGKAFSCGSYLNQHQRIHTGEKPYECSECGKAFHQILSLRLHQRIHAGEKPYNCSQCGNNFNCASALRRHQKIHNREAL", "length": 609, "header": "tr|A0A4X1TBC3-1|A0A4X1TBC3_PIG Isoform 1 of Zinc finger protein 527 OS=Sus scrofa OX=9823 GN=ZNF527 PE=3 SV=1 CANONICAL=A0A4X1TBC3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TBC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TBC3/entry#A0A4X1TBC3-1", "sequence": { "sequence": "MAVGLCKAMSQGLVTFRDVALNFSQEEWEWLDSSQKDLYRDVMLENYRNLVWLGLSISKPNMISLLEQGKEPCMVEREMSDGQYADWESWYEIKALSPKWYIDEEEISQGIIMERLTSYGLECSSFRASWKYEGEFARHQRNEQRHFRQVTTHKEISAMKRDNEYNNSERNVLLKSVLLKQQRVPTVEQVHKFDIYDKMFPPNSVLIGHKRLHAEKESLIGNECEEFNQSTYLSKDAEIPPGGKPYESNDFSNLLSFHSLLTQHRTTHFGKLHHGYNECGDAFSCYSFFAQPQRILNGEKPYVCNDCGKAFSHDFFLSEHQRTHIGEKPYECKECNKAFRQSAHLAQHQRIHTGEKPFACNECGKAFSRYAFLVEHRRIHTGEKPYECKECNKAFRQSAHLNQHQRIHTGEKPYECNQCGKAFSRRIALTLHQRIHTGEKPFRCNECGKTFGYRSHLNQHQRIHTGEKPYECIKCGKFFRTDSQLNRHHRIHTGERPFECSKCGKAFSDALVLIHHKRSHAGEKPYECNKCGKAFSCGSYLNQHQRIHTGEKPYECSECGKAFHQILSLRLHQRIHAGEKPYNCSQCGNNFNCASALRRHQKIHNREAL", "length": 609, "header": "tr|A0A4X1TBC3-1|A0A4X1TBC3_PIG Isoform 1 of Zinc finger protein 527 OS=Sus scrofa OX=9823 GN=ZNF527 PE=3 SV=1 CANONICAL=A0A4X1TBC3-1" }, "locus": { "chromosome": "6", "start_pos": 46327608, "end_pos": 46307696, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064324.3", "url": 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"database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1TD59", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TD59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TD59-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TD59-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSALEWYAHKSLGDGIFWIQERFYESGNRANIWLVRGSEQDVVIDTGLGLRSLPEYLYSSGLLQDREAKEDAACRPLLAVATHVHFDHSGGLYQFDRVAVHHAEAEALARGDNFETVTWLSDSEVVRAPSPGWRARQFRVQAVQPTLILQDGDVINLGDRQLTVMHMPGHSRGSICLHDKDRKILFSGDVVYDGSLIDWLPYSRISDYIGTCERLIELVDRGLVEKVLPGHFNTFGAERLFRLASNYISKAGICHKVSTFAMRSLASLALRVTNSRTSA", "length": 279, "header": "tr|A0A4X1TD59-1|A0A4X1TD59_PIG Isoform 1 of Acyl-coenzyme A thioesterase MBLAC2 OS=Sus scrofa OX=9823 GN=MBLAC2 PE=1 SV=1 CANONICAL=A0A4X1TD59-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TD59-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TD59/entry#A0A4X1TD59-1", "sequence": { "sequence": 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genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TD59", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TD59" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519704", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519704", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A5PJT0-1", "protein_name": "Acyl-coenzyme A thioesterase MBLAC2", "gene_name": "MBLAC2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSALEWYAHKSLGDGIFWIQERFYESGNRANIWLVRGSEQDVVIDTGLGLRSLPEYLYSSGLLRDRAARDNAACRPLLAVATHVHFDHSGGLYQFDRVAVHHAEAEALARGDNFETVTWLSDSEVVRAPSPGWRARQFRVQAVQPTLVLQDGDVINLGDRQLTVMHMPGHSRGSICLHDKDRKILFSGDVVYDGSLIDWLPYSRISDYVGTCERLIELVDRGLVEKVLPGHFNTFGAERLFRLASNYISKAGICHKVSTFAMRSLASLALRVTNSRTSP", "length": 279 }, "evidence": [ { "id": "A0A4X1TD59", "url": "https://omabrowser.org/oma/group/A0A4X1TD59/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "B0R0T6-1", "protein_name": "Acyl-coenzyme A thioesterase MBLAC2", "gene_name": "mblac2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAATDWYAHKSLENGVFWIQERFYESGNRANIWLIRGSHQDVVIDTGLGLRSLPEYIQEKSLLGDDAKRKNPLLAIGTHVHFDHSGGLHQFQQVGVHKAEVDALANGDNFETVTWLSDREIVEVPSPGWRARQYRVKAVTPTHILQEGDVINLGDRQLSVLHMPGHSRGSICLHDKESKMLFSGDVVYDGSMIDWLPYSRISDYIHSCERLVEMVDKEEIDQVMPGHYNTFGGKRLHRLASNYIASAGTCHRASTSVVKSIASLALRASNSRSAC", "length": 275 }, "evidence": [ { "id": "A0A4X1TD59", "url": "https://omabrowser.org/oma/group/A0A4X1TD59/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D4A249-1", "protein_name": "Acyl-coenzyme A thioesterase MBLAC2", "gene_name": "Mblac2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSALEWYAHKSLGDGIFWIQERFYESGNRANIWLVRGSEQDVVIDTGLGLRSLPEYLYSSGLLQDCGAKEDAGRRPLLAVATHVHFDHSGGLYQFDQVAVHRAEAEALARGDNFETVTWLSDSEVVRAPSPGWRARQFRVQAVQPTLILQDGDVINLGDRQLTVMHMPGHSRGSICLHDKDRKVLFSGDVVYDGSLIDWLPYSRISDYVGTCERLIELVDRGLVEKVLPGHFNTFGAERLFRLASNYISKAGICHKVSTFAMRSLASLALRVTNPRTSP", "length": 279 }, "evidence": [ { "id": "A0A4X1TD59", 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"strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106478.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106478.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074844.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074844.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 284, "start_aa": "Thr", "end_pos": 284, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr284", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to 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"sequence": { "sequence": "MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQFPDRCTLKTGRYNINFISSLGVSYMMLCSENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQMEIKLRPPYQIPMCELGSANGVTSAFSVDCKGAGKISSAHQRLEPATLSGIVAFILSLLCGALNLIRGFHAIESLLQSDGEDLNYIIAFFLGTAACLYQCYLLVYYTSWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQGKAPDHDV", "length": 307 }, "evidence": [ { "id": "A0A4X1TGL9", "url": "https://omabrowser.org/oma/group/A0A4X1TGL9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96IW7-1", "protein_name": "Vesicle-trafficking protein SEC22a", "gene_name": "SEC22A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQGKAPDYDV", "length": 307 }, "evidence": [ { "id": "A0A4X1TGL9", "url": "https://omabrowser.org/oma/group/A0A4X1TGL9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TGL9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TGL9" } ], "pmid": "" }, { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TGL9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TGL9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TGL9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TGL9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1TGL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TGL9" }, { "id": "PS50859", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50859" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Longin", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 119, "start_aa": "Ser", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 284 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 137, "end_pos": 139 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TFL1-1", "uniprot_ac": "A0A4X1TFL1", "uniprot_id": "A0A4X1TFL1_PIG", "mass": { "chemical_mass": 59566.0, "monoisotopic_mass": 59566.0 }, "refseq": { "ac": "XP_020927400", "name": "zinc finger protein 35 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927400" }, "gene_names": [ { "name": "ZNF35", "type": "recommended", "evidence": [ { "id": "A0A4X1TFL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TFL1" } ] }, { "name": "ZNF35", "type": "synonym", "evidence": [ { "id": "XP_020927400", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927400" } ] } ], "protein_names": [ { "name": "Zinc finger protein 35", "type": "synonym", "evidence": [ { "id": "A0A4X1TFL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TFL1/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 35 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020927400", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927400" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TFL1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TFL1#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "A0A5G2QMW6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMW6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TFL1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TFL1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF35", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TFL1", "locus": { "chromosome": "13", "start_pos": 27914479, "end_pos": 27902558, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032080", "url": "https://www.ensembl.org/id/ENSSSCG00000032080" } ] } } ], "crossref": [ { "id": "A0A4X1TFL1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TFL1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032080", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032080", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110255278", "url": "https://www.ncbi.nlm.nih.gov/gene/110255278", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255278", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255278", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VNDCHLP", "url": "https://omabrowser.org/oma/group/VNDCHLP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TFL1", "url": "https://www.orthodb.org/?gene=A0A4X1TFL1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24390", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24390", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24390:SF159", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24390:SF159", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24390:SF260", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24390:SF260", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020927400", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927400", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TFL1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TFL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TFL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TFL1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMW6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMW6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMW6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FR48", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FR48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FR48-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FR48-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTAELREAMALAPWGPVTVKKEEEEEEIFMGQASSQQVHSENIKVWASRENPQTGLDVSEQEEKGQNMFWDMALVLNPAMQEASAASTQGNSSLPGTLAKSELRETHGNVTYLDAETKNPQLLVPKIEICDEAEKSFIIPERMEKADSQGPELGEAGEKGNMLKRQRIKREKKGPRQVTVKDCQIPDNFKEEEDQKCHTSEERYSLGSGSVKNQKSQPGQKPFTCSVCGKGFSQSANLVVHQRIHTGEKPFECHECGKAFIQSANLVVHQRIHTGQKPYVCSKCGKAFTQSSNLTVHQKIHSLEKTFKCSECEKAFSYSSQLARHQKVHITEKCYECNECGKTFTRSSNLIVHQRIHTGEKPFACNDCGKAFTQSANLIVHQRSHTGEKPYECKECGKAFSCFSHLIVHQRIHTAEKPYDCSECGKAFSQLSCLIVHQRIHSGDLPYVCNECGKAFTCSSYLLIHQRIHNGEKPYTCNECGKAFRQRSSLTVHQRTHTGEKPYECAKCGAAFISNSHLMRHHRTHLVEST", "length": 530, "header": "tr|A0A4X1TFL1-1|A0A4X1TFL1_PIG Isoform 1 of Zinc finger protein 35 OS=Sus scrofa OX=9823 GN=ZNF35 PE=3 SV=1 CANONICAL=A0A4X1TFL1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TFL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TFL1/entry#A0A4X1TFL1-1", "sequence": { "sequence": "MTAELREAMALAPWGPVTVKKEEEEEEIFMGQASSQQVHSENIKVWASRENPQTGLDVSEQEEKGQNMFWDMALVLNPAMQEASAASTQGNSSLPGTLAKSELRETHGNVTYLDAETKNPQLLVPKIEICDEAEKSFIIPERMEKADSQGPELGEAGEKGNMLKRQRIKREKKGPRQVTVKDCQIPDNFKEEEDQKCHTSEERYSLGSGSVKNQKSQPGQKPFTCSVCGKGFSQSANLVVHQRIHTGEKPFECHECGKAFIQSANLVVHQRIHTGQKPYVCSKCGKAFTQSSNLTVHQKIHSLEKTFKCSECEKAFSYSSQLARHQKVHITEKCYECNECGKTFTRSSNLIVHQRIHTGEKPFACNDCGKAFTQSANLIVHQRSHTGEKPYECKECGKAFSCFSHLIVHQRIHTAEKPYDCSECGKAFSQLSCLIVHQRIHSGDLPYVCNECGKAFTCSSYLLIHQRIHNGEKPYTCNECGKAFRQRSSLTVHQRTHTGEKPYECAKCGAAFISNSHLMRHHRTHLVEST", "length": 530, "header": "tr|A0A4X1TFL1-1|A0A4X1TFL1_PIG Isoform 1 of Zinc finger protein 35 OS=Sus scrofa OX=9823 GN=ZNF35 PE=3 SV=1 CANONICAL=A0A4X1TFL1-1" }, "locus": { "chromosome": "13", "start_pos": 27912106, "end_pos": 27906054, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042762.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042762.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042963.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042963.1" } ] } }, { "isoform_ac": "A0A5G2QMW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TFL1/entry#A0A5G2QMW6-1", "sequence": { "sequence": "MTAELREAMALAPWGPVTVKKEEEEEEIFMGQASSQQVHSENIKVWASRENPQTGLDVSEQEEKGQNMFWDMALVLNPAMQEASAASTQGNSSLPGTLAKSELRETHGNVTYLDAETKNPQLLVPKIEICDEAEKSFIIPERMEKADSQGPELGEAGEKGNMLKRQRIKREKKGPRQVTVKDCQIPDNFKEEEDQKCHTSEERYSLGSGSVKNQKSQPGQKPFTCSVCGKGFSQSANLVVHQRIHTGEKPFECHECGKAFIQSANLVVHQRIHTGQKPYVCSKCGKAFTQSSNLTVHQKIHSLEKTFKCSECEKAFSYSSQLARHQKVHITEKCYECNECGKTFTRSSNLIVHQRIHTGEKPFACNDCGKAFTQSANLIVHQRSHTGEKPYECKECGKAFSCFSHLIVHQRIHTAEKPYDCSECGKAFSQLSCLIVHQRIHSGDLPYVCNECGKAFTCSSYLLIHQRIHNGEKPYTCNECGKAFRQRSSLTVHQRTHTGEKPYECAKCGAAFISNSHLMRHHRTHGGE", "length": 528, "header": "tr|A0A5G2QMW6-1|A0A4X1TFL1_PIG Computationally mapped isoform of Zinc finger protein 35 OS=Sus scrofa OX=9823 GN=ZNF35 PE=3 SV=1 CANONICAL=A0A4X1TFL1-1" }, "locus": { "chromosome": "13", "start_pos": 27912102, "end_pos": 27906054, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085297.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085297.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066227.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066227.1" } ] } }, { "isoform_ac": "A0A8W4FR48-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TFL1/entry#A0A8W4FR48-1", "sequence": { "sequence": "MTAELREAMALAPWGPVTVKKEEEEEEIFMGQASSQQVHSENIKVWASRENPQTGLDVSEQEEKMLKPRTHSYWFQKLRSVMKQKSPSYQREWRKLTLKDLS", "length": 102, "header": "tr|A0A8W4FR48-1|A0A4X1TFL1_PIG Computationally mapped isoform of Zinc finger protein 35 OS=Sus scrofa OX=9823 GN=ZNF35 PE=3 SV=1 CANONICAL=A0A4X1TFL1-1" }, "locus": { "chromosome": "13", "start_pos": 27910973, "end_pos": 27906054, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100591.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100591.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080991.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080991.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMW6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMW6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110255278", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255278", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061I142-1", "protein_name": "Zinc finger protein 35", "gene_name": "Znf35", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTAELKKIVGRASWGPVKVKKEEDEHGTMSPASSQQVYSDNVKAWGPGAGPYLSINVSEEEEKGQKMFWDMALVLKATQEAAAAAVPLGSYSLPGTLAKSEILEPHGNPAPLDTDTKNLQLLDPKTEIHDEAEEPLLILGRIQKGDLQGPELGESCEKGNVLKRQKIKREKRDTRKVTVKESFREDEDLKSEKSKKKYSLSSGPAKNQKIQPGEKPFTCSECGKGFSQSANLVVHQRIHTGEKPFECHECGKAFIQSANLVVHQRIHTGQKPYVCAKCGKAFTQSSNLTVHQKIHSLEKTFKCGECEKAFSYSSQLARHQKVHITEKCYECSECGKAFTRSSNLIVHQRIHTGEKPFACNDCGKAFTQSANLIVHQRSHTGEKPYECKDCGKAFSCFSHLIVHQRIHTAEKPYDCSECGKAFSQLSCLIVHQRIHSGDLPYVCSECGKAFTCSSYLLIHQRIHNGEKPYTCNQCGKAFRQRSSLTVHQRTHTGEKPYECAKCGAAFISNSHLMRHHRTHLVE", "length": 522 }, "evidence": [ { "id": "A0A4X1TFL1", "url": "https://omabrowser.org/oma/group/A0A4X1TFL1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1MN51-1", "protein_name": "Zinc finger protein 35", "gene_name": "ZNF35", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTTELREAVALAHWGPVTVKKEEEEEEGFVGQASSQQVHSENIKVWAPGEAPQTCLPVSEQEEKGQNMFWDMAVVLKPTQEAPAASTPGSSSLPGTLAKSELLDTHGNMACLGAETKNRQLLVPKIEICDETEKSFIVSGRIQKVDPQGPKLGEACENRNMLKRQRIKREQKDFGQVTVKDCHLPENLKEEEDQKCPKAEERYTLSSGSVKNQKSQPGQKPFTCGVCGKGFSQSANLVVHQRIHTGEKPFECHQCGKAFIQSANLVVHQRIHTGQKPYVCSKCGKAFTQSSNLTVHQKIHSLEKTFKCNECEKAFSYSSQLARHQKVHITEKCYECNECGKTFTRSSNLIVHQRIHTGEKPFACNDCGKAFTQSANLIVHQRSHTGEKPYECKECGKAFSCFSHLIVHQRIHTAEKPYDCSECGKAFSQLSCLIVHQRIHSGDLPYVCNECGKAFTCSSYLLIHQRIHNGEKPYTCNECGKSFRQRSSLTVHQRTHTGEKPYECAKCGAAFISNSHLMRHHRTHLVEST", "length": 529 }, "evidence": [ { "id": "A0A4X1TFL1", "url": "https://omabrowser.org/oma/group/A0A4X1TFL1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9I0-1", "protein_name": "Zinc finger protein 105", "gene_name": "Zfp105", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTTELKETMGRASWDPEKVKMEEDDESVISQASSQQVYYENDKDCAPGEGPYGSISVSEDEEKGQEMFREMAVVLKATQEAAAASPFGSYSLAGTLAESQILELHGNPTPTGAKSKNLELLIPKKEISDDSEKPPMILGRIQKGDLQGPELGESCEKGNVLKGLRIKEEKGDLGEATVKDCPLSESFRDEEESKKSRGKYSLRSTPGKNQKIQPGQKPFTCSECGKGFSQSANLVVHQRIHTGEKPFECHECGKAFIQSANLVVHQRIHTGQKPYVCGKCGKAFTQSSNLTVHQKIHSLEKTFKCSECEKAFSYSSQLARHQKVHITEKCYECNECGKTFTRSSNLIVHQRIHTGEKPFACSDCGKAFTQSANLIVHQRSHTGEKPYKCKDCEKAFSCFSHLIVHQRIHTAEKPYDCSECGKAFSQLSCLIVHQRIHSGDLPYVCNECGKAFTCSSYLLIHQRIHNGEKPYSCNECGKAFRQRSSLTVHQRTHTGEKPYECAKCGAAFISNSHLMRHHRTHLVE", "length": 524 }, "evidence": [ { "id": "A0A4X1TFL1", "url": "https://omabrowser.org/oma/group/A0A4X1TFL1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13682-1", "protein_name": "Zinc finger protein 35", "gene_name": "ZNF35", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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{ "id": "cd00111", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00111", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "780401", "url": "https://www.ncbi.nlm.nih.gov/gene/780401", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017957", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017957", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017994", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017994", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044913", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044913", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:780401", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:780401", "database": "KEGG Pathway", 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"database": "Ensembl Transcript", "id": "ENSSSCT00000057760.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057760.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031403.1", "url": "https://www.ensembl.org/id/ENSSSCP00000031403.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": 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"tr|A0A4X1TGT2-1|A0A4X1TGT2_PIG Isoform 1 of Retbindin OS=Sus scrofa OX=9823 GN=RTBDN PE=1 SV=1 CANONICAL=A0A4X1TGT2-1" }, "locus": { "chromosome": "2", "start_pos": 66191394, "end_pos": 66188089, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063588.2", "url": "https://www.ensembl.org/id/ENSSSCT00000063588.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042852.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042852.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith 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"MDIDASEEDPEMKKSSAVCVGREEDIKKSERMTAIVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGDIEEFDGRPCIVCPWHKYKITLATGEGLYQSIDPKDPAAKPKWCSKGIKQRIHIVTVDNGNIYVTLSNEPFKCDSDFYATGVFKVIKSSS", "length": 157, "header": "tr|A0A4X1TJB2-1|A0A4X1TJB2_PIG Isoform 1 of Rieske domain-containing protein OS=Sus scrofa OX=9823 GN=RFESD PE=4 SV=1 CANONICAL=A0A4X1TJB2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TJB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJB2/entry#A0A4X1TJB2-1", "sequence": { "sequence": "MDIDASEEDPEMKKSSAVCVGREEDIKKSERMTAIVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGDIEEFDGRPCIVCPWHKYKITLATGEGLYQSIDPKDPAAKPKWCSKGIKQRIHIVTVDNGNIYVTLSNEPFKCDSDFYATGVFKVIKSSS", "length": 157, "header": "tr|A0A4X1TJB2-1|A0A4X1TJB2_PIG Isoform 1 of Rieske domain-containing protein OS=Sus scrofa OX=9823 GN=RFESD PE=4 SV=1 CANONICAL=A0A4X1TJB2-1" }, "locus": { "chromosome": "2", "start_pos": 102254252, "end_pos": 102251399, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069670.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069670.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064519.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064519.1" } ] } }, { "isoform_ac": "F1REY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJB2/entry#F1REY7-1", "sequence": { "sequence": "MDIDASEEDPEMKKSSAVCVGREEDIKKSERMTAIVHDREVVIFYHKGEYHAMDIRCYRI", "length": 60, "header": "tr|F1REY7-1|A0A4X1TJB2_PIG Computationally mapped isoform of Rieske domain-containing protein OS=Sus scrofa OX=9823 GN=RFESD PE=4 SV=2 CANONICAL=A0A4X1TJB2-1" }, "locus": { "chromosome": "2", "start_pos": 102253996, "end_pos": 102251399, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015445.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015445.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015036.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015036.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1REY7", "url": "https://www.uniprot.org/uniprotkb/F1REY7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516784", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516784", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZF58-1", "protein_name": "Rieske domain-containing protein", "gene_name": "Rfesd", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDPEISEQDEEQKTVCVGREEDIRRSERMTAVVHGREVVIFYHKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLYQSIDPKDPSAKPKWCSKGVKQRIHIVTVKNGNIYVTLSKEPFKCDSDYYATGEFKVIQSSS", "length": 154 }, "evidence": [ { "id": "A0A4X1TJB2", "url": "https://omabrowser.org/oma/group/A0A4X1TJB2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BD81-1", "protein_name": "Rieske domain-containing protein", "gene_name": "RFESD", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDPGGSEQDPEMKEQYASVYVGREEDIKRSERITAVVHDREVVIFYHKGEFHAMDIRCYHSGGPLHLGEIEEFDGRACIVCPWHKYKITLETGEGLYQSIDPKDPSAKPMWCSKGIKQRIHTVTVDNGNIYVTLSNEPFKCDSDYYATGIFKVIPSSF", "length": 158 }, "evidence": [ { "id": "A0A4X1TJB2", "url": "https://omabrowser.org/oma/group/A0A4X1TJB2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3H758-1", "protein_name": "Rieske domain-containing protein", "gene_name": "Rfesd", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDPGISEQDDEKKKHTSVCVGREDDIRKLERMTAVVHDREVVIFYHKGEYHAMDIRCYHAGGPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLYQSINPKDPSARPQWCSKGVKQRIHTVTVDNGNIYVTLSEEPFKCDSDFYATGEFKVIQSSS", "length": 157 }, "evidence": [ { "id": "A0A4X1TJB2", "url": "https://omabrowser.org/oma/group/A0A4X1TJB2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8K2P6-1", "protein_name": "Rieske domain-containing protein", "gene_name": "Rfesd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPEISEQDEEKKKYTSVCVGREEDIRKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEPFKCDSDYYATGEFKVIQSSS", "length": 157 }, "evidence": [ { "id": "A0A4X1TJB2", "url": "https://omabrowser.org/oma/group/A0A4X1TJB2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TAC1-1", "protein_name": "Rieske domain-containing protein", "gene_name": "RFESD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIHTVTVDNGNIYVTLSNEPFKCDSDFYATGDFKVIKSSS", "length": 157 }, "evidence": [ { "id": "A0A4X1TJB2", "url": "https://omabrowser.org/oma/group/A0A4X1TJB2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TJB2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJB2" } ], "pmid": "" }, { "name": "2 iron, 2 sulfur cluster binding", "id": "GO:0051537", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051537", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TJB2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJB2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1TJB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJB2" }, { "id": "PS51296", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51296" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rieske", "eco_id": "ECO_0000259", "start_pos": 17, "end_pos": 131, "start_aa": "Ala", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TJD6-1", "uniprot_ac": "A0A4X1TJD6", "uniprot_id": "A0A4X1TJD6_PIG", "mass": { "chemical_mass": 83647.0, "monoisotopic_mass": 83647.0 }, "refseq": {}, "gene_names": [ { "name": "CCDC33", "type": "recommended", "evidence": [ { "id": "A0A4X1TJD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJD6" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 33", "type": "synonym", "evidence": [ { "id": "A0A4X1TJD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJD6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TJD6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJD6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC33", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJD6", "locus": { "chromosome": "7", "start_pos": 59190179, "end_pos": 59290877, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001908", "url": "https://www.ensembl.org/id/ENSSSCG00000001908" } ] } } ], "crossref": [ { "id": "A0A4X1TJD6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TJD6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00030", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00030", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21623", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21623", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21623:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21623:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1TJD6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TJD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TNS8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TNS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNS8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRKKKKVTEGPEDPPNTSQNVDSVISHLAPPNKEIITVTLHGATNLPTCKDGSEPWPFVVVKTASEEGKNQISRAVTSVPREPTRAPIWGDTVKVEIQAEDAGHEDVILKVADNKKKEKLLSFQIPIKYLRVFHPYHFELVNPTEPGKADEATAKTQLYATVIRKGSFIPRYIGHNHTALEVFLWGINEPLANNPSPMVVVARVVPNYKEFQVNQENQDPASLGLPITQLSFPIPSVMNFDVPQVSRNGCPQLSKPGGPPELPLWNESFLFHGRDGATTFSGDTALVLEYYPSSSKPWTLRKPLGISVLPLKSHLYQKMLTGKGLNGLRVEKLPITNTRLKTINGEAPTVDLSLQLLSSERPKSFLTPNNNMVLPILDPKILDEELDTIHESGSKATVSSTIGLRTSTSEEAEEEPQVTKMFRKMEMNNYRRAMKKMAEDILLLQKQVSILEAENHMLRSQLTQEEEEEDNINKAQNLASMKKKLLLSELDKKKLRDKVQHLQNELIRKNDREKELLLLHQAQQPQSALLKQYQDKLQKMKALEETVRHQEKVIEKMERVLEDRLQDRNEPLQKRLQGKPNVAFPMLSASGLPPAPTGETLPVDIYSVLLAENSRLRAELDKNRHQSAPIILQQQALPDLLANNSDKFNLLAKLERAQSRILSLESQLEDSARRWGREKQDLATRLQEQEYGLRHPSNTIITDLPNPSALSKDKRRPSKLDPLIPSSKLLKSQHTEYQT", "length": 740, "header": "tr|A0A4X1TJD6-1|A0A4X1TJD6_PIG Isoform 1 of Coiled-coil domain containing 33 OS=Sus scrofa OX=9823 GN=CCDC33 PE=4 SV=1 CANONICAL=A0A4X1TJD6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TJD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJD6/entry#A0A4X1TJD6-1", "sequence": { "sequence": "MRRKKKKVTEGPEDPPNTSQNVDSVISHLAPPNKEIITVTLHGATNLPTCKDGSEPWPFVVVKTASEEGKNQISRAVTSVPREPTRAPIWGDTVKVEIQAEDAGHEDVILKVADNKKKEKLLSFQIPIKYLRVFHPYHFELVNPTEPGKADEATAKTQLYATVIRKGSFIPRYIGHNHTALEVFLWGINEPLANNPSPMVVVARVVPNYKEFQVNQENQDPASLGLPITQLSFPIPSVMNFDVPQVSRNGCPQLSKPGGPPELPLWNESFLFHGRDGATTFSGDTALVLEYYPSSSKPWTLRKPLGISVLPLKSHLYQKMLTGKGLNGLRVEKLPITNTRLKTINGEAPTVDLSLQLLSSERPKSFLTPNNNMVLPILDPKILDEELDTIHESGSKATVSSTIGLRTSTSEEAEEEPQVTKMFRKMEMNNYRRAMKKMAEDILLLQKQVSILEAENHMLRSQLTQEEEEEDNINKAQNLASMKKKLLLSELDKKKLRDKVQHLQNELIRKNDREKELLLLHQAQQPQSALLKQYQDKLQKMKALEETVRHQEKVIEKMERVLEDRLQDRNEPLQKRLQGKPNVAFPMLSASGLPPAPTGETLPVDIYSVLLAENSRLRAELDKNRHQSAPIILQQQALPDLLANNSDKFNLLAKLERAQSRILSLESQLEDSARRWGREKQDLATRLQEQEYGLRHPSNTIITDLPNPSALSKDKRRPSKLDPLIPSSKLLKSQHTEYQT", "length": 740, "header": "tr|A0A4X1TJD6-1|A0A4X1TJD6_PIG Isoform 1 of Coiled-coil domain containing 33 OS=Sus scrofa OX=9823 GN=CCDC33 PE=4 SV=1 CANONICAL=A0A4X1TJD6-1" }, "locus": { "chromosome": "7", "start_pos": 59290678, "end_pos": 59190182, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002137.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002137.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002087.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002087.4" } ] } }, { "isoform_ac": "A0A4X1TNS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJD6/entry#A0A4X1TNS8-1", "sequence": { "sequence": "MGEAESPSALAPKAAPGLLDSCSEMNNYRRAMKKMAEDILLLQKQVSILEAENHMLRSQLTQEEEEEDNINKAQNLASMKKKLLLSELDKKKLRDKVQHLQNELIRKNDREKELLLLHQAQQPQSALLKQYQDKLQKMKALEETVRHQEKVIEKMERVLEDRLQDRNEPLQKRLQGKPNVAFPMLSASGLPPAPTGETLPVDIYSVLLAENSRLRAELDKNRHQSAPIILQQQALPVDPGELGARGDLAERLQETDGPGHSKGTLPAQDLLANNSDKFNLLAKLERAQSRILSLESQLEDSARRWGREKQDLATRLQEQEYGLRHPSNTIITDLPVSDPSGGAPWCSGGGAGSHPTPVTGP", "length": 361, "header": "tr|A0A4X1TNS8-1|A0A4X1TNS8_PIG Computationally mapped isoform of Coiled-coil domain containing 33 OS=Sus scrofa OX=9823 GN=CCDC33 PE=4 SV=1 CANONICAL=A0A4X1TJD6-1" }, "locus": { "chromosome": "7", "start_pos": 59222963, "end_pos": 59191042, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056378.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056378.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045057.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045057.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., 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"Protein" ] }, { "id": "A0A4X1TL02-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL02-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKGGEGDAGEQAPLNPEAESPAGSATYREFVHRGYLDLMGASQHSLRALSWRRLYLSRAKLKASSRTSALLSGFAMVAMVEVQLESKYEYPPGLLVAFSACTTVLVAVHLFALMVSTCLLPHIEAVSNIHNLNSVHQSPHQRLHRYVELAWGFSTALGTFLFLAEVVLVGWVKFVPIGAPSGTSAPMVPASQVPGTLPPVATALSPASKPSSASVAPSQAEPPEACPPRQVCGGGGGGGGHGPGWQAAMASTAIMVPVGLVFVVFALHFYRSLVAHKTDRHKQELEELSRLQGELQAV", "length": 298, "header": "tr|A0A4X1TL02-1|A0A4X1TL02_PIG Isoform 1 of ORAI calcium release-activated calcium modulator 3 OS=Sus scrofa OX=9823 GN=ORAI3 PE=3 SV=1 CANONICAL=A0A4X1TL02-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TL02-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL02/entry#A0A4X1TL02-1", "sequence": { "sequence": 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to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TL02", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL02" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100736565", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736565", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061I7X5-1", "protein_name": "Protein orai-3", "gene_name": "Orai3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKGGEGDTGEQAPLNPGADSPAGSATYREFVHRGYLDLMGASQHSLRALSWRRLYLSRAKLKASSRTSALLSGFAMVAMVEVQLESGHEYPPGLLVAFSACTTVLVAVHLFALMVSTCLLPHIEAVSNIHNLNSVHQSPHQRLHRYVELAWGFSTALGTFLFLAEVVLVGWVKFVPIGAPMNKPAPVVPMSQVPPVTVSLSLASNLTPSSASIATSQQPSKACPPRQVCGGAHGPGWQAAMASTAIMVPVGLVFMAFALHFYRSLVAHKTDRHKQELEELSRLQGELQAV", "length": 290 }, "evidence": [ { "id": "A0A4X1TL02", "url": "https://omabrowser.org/oma/group/A0A4X1TL02/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BLX3-1", "protein_name": "ORAI calcium release-activated calcium modulator 3", "gene_name": "ORAI3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKGGEGDPGEQAPLNPEAESPAGSATYREFVHRGYLDLMGASQHSLRALSWRRLYLSRAKLKASSRTSALLSGFAMVAMVEVQLESKHEYPPGLLVAFSACTTVLVAVHLFALMVSTCLLPHIEAVSNIHNLNSVHQSPHQRLHRYVELAWGFSTALGTFLFLAEVVLVGWVKFVPIGAPLGTSGSVGPASQLPTVATSLSPASKPSSVSVAPSQAEPPEPCPPRQACGSGAAHGPGWQAAMASTAIMVPVGLVFVAFALHFYRSLVAHKTDRHKQELEELSRLQGELQAV", "length": 291 }, "evidence": [ { "id": "A0A4X1TL02", "url": "https://omabrowser.org/oma/group/A0A4X1TL02/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6P8G8-1", "protein_name": "Protein orai-3", "gene_name": "Orai3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGGEGDTGEQAPLNPEVDSPAGSATYREFVHRGYLDLMGASQHSLRALSWRRLYLSRAKLKASSRTSALLSGFAMVAMVEVQLENDHEYPPGLLVAFSACTTVLVAVHLFALMVSTCLLPHIEAVSNIHNLNSVHQSPHQRLHRYVELAWGFSTALGTFLFLAEVVLVGWVKFVPIGAPMGKPAPVVPMSQVPPVTVSLSLASNLTPSSASITTSQQPSKACPPRQVCDSAHGPGWQAAMASTAIMVPVGLVFMAFALHFYRSLVAHKTDRHKQELEELSRLQGELQAV", "length": 290 }, "evidence": [ { "id": "A0A4X1TL02", "url": "https://omabrowser.org/oma/group/A0A4X1TL02/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BRQ5-1", "protein_name": "Protein orai-3", "gene_name": "ORAI3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGGEGDAGEQAPLNPEGESPAGSATYREFVHRGYLDLMGASQHSLRALSWRRLYLSRAKLKASSRTSALLSGFAMVAMVEVQLESDHEYPPGLLVAFSACTTVLVAVHLFALMVSTCLLPHIEAVSNIHNLNSVHQSPHQRLHRYVELAWGFSTALGTFLFLAEVVLVGWVKFVPIGAPLDTPTPMVPTSRVPGTLAPVATSLSPASNLPRSSASAAPSQAEPACPPRQACGGGGAHGPGWQAAMASTAIMVPVGLVFVAFALHFYRSLVAHKTDRYKQELEELNRLQGELQAV", "length": 295 }, "evidence": [ { "id": "A0A4X1TL02", "url": "https://omabrowser.org/oma/group/A0A4X1TL02/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TL02", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL02" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TL02", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL02" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "store-operated calcium entry", "id": "GO:0002115", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002115", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TL02", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL02" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "store-operated calcium channel activity", "id": "GO:0015279", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015279", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TL02", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL02" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "29671", "name": "", "equation": "Ca(2+)(in) = Ca(2+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29671", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29671" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"uniprot_ac": "A0A4X1TL05", "uniprot_id": "A0A4X1TL05_PIG", "mass": { "chemical_mass": 69046.0, "monoisotopic_mass": 69046.0 }, "refseq": { "ac": "XP_003129868", "name": "kelch repeat and BTB domain-containing protein 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129868" }, "gene_names": [ { "name": "KBTBD3", "type": "recommended", "evidence": [ { "id": "A0A4X1TL05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL05" } ] }, { "name": "KBTBD3", "type": "synonym", "evidence": [ { "id": "XP_003129868", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129868" } ] } ], "protein_names": [ { "name": "Kelch repeat and BTB domain containing 3", "type": "synonym", "evidence": [ { "id": "A0A4X1TL05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL05/entry#names_and_taxonomy" } ] }, { "name": "kelch repeat and BTB domain-containing protein 3", "type": "synonym", "evidence": [ { "id": "XP_003129868", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129868" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TL05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL05" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KBTBD3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL05", "locus": { "chromosome": "9", "start_pos": 35874041, "end_pos": 35903729, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014999", "url": "https://www.ensembl.org/id/ENSSSCG00000014999" } ] } } ], "crossref": [ { "id": "A0A4X1TL05", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TL05", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd18271", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18271", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18480", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18480", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524698", "url": "https://www.ncbi.nlm.nih.gov/gene/100524698", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047062", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047062", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524698", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524698", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KGKCCRK", "url": "https://omabrowser.org/oma/group/KGKCCRK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TL05", "url": "https://www.orthodb.org/?gene=A0A4X1TL05", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412:SF418", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412:SF418", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129868", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129868", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TL05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TL05-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL05-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNPNDCSQQSSCNGIPSEKKNNFIVSEDHGQKILSILQNFREQNVFYDFKIIMKDEIIPCHRCVLAACSDFFRAMFEVNMKERDGGSVTITNLSSKAVKAFLDYAYTGKTKITDDNVEMFFQLSSFLQVSFLSKACSDFLIKSINLVNCLQLLSISDSYGSARLFDHALYFVQHHFSLLFKSSDFLEMNFGVLQKCLESDELDVPEEETVLKVVLSWTKHNLESRQKHLPYLIKKVRLYQLSEETLQDCLLNEECLLKSTDCFDIIMDAIKCVQGSGGLFPDARPSTTEKYIFVHKTEENGENQHTFCYNIKSDSWKILPQSHLIDLPGSSLSSYGEKIFLTGGCKGPCCRTVRLHIAESYHDATDQTWCYCPVKNDFFLVSAMKTPRTMHTSVMALNRLFVFGGKTRGSQDIKSLLDVESYNPLSKEWVSVSPLPRGIYYPEASACQNVIYVLGSEVEITDAFNPSLDCFFKYNATTDQWSELVAEFGQFFHATLIKAVPVNCTLYICDLSTYKVYSFCPDTCVWKGEGSFECAGFNAGAVGIEDKIYILGGDYAPDEITDEVQVYHSSRSEWEEVSPMPKALTEFYCQAIQFNKYRDPWFSNHF", "length": 607, "header": "tr|A0A4X1TL05-1|A0A4X1TL05_PIG Isoform 1 of Kelch repeat and BTB domain containing 3 OS=Sus scrofa OX=9823 GN=KBTBD3 PE=4 SV=1 CANONICAL=A0A4X1TL05-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TL05-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL05/entry#A0A4X1TL05-1", "sequence": { "sequence": "MDNPNDCSQQSSCNGIPSEKKNNFIVSEDHGQKILSILQNFREQNVFYDFKIIMKDEIIPCHRCVLAACSDFFRAMFEVNMKERDGGSVTITNLSSKAVKAFLDYAYTGKTKITDDNVEMFFQLSSFLQVSFLSKACSDFLIKSINLVNCLQLLSISDSYGSARLFDHALYFVQHHFSLLFKSSDFLEMNFGVLQKCLESDELDVPEEETVLKVVLSWTKHNLESRQKHLPYLIKKVRLYQLSEETLQDCLLNEECLLKSTDCFDIIMDAIKCVQGSGGLFPDARPSTTEKYIFVHKTEENGENQHTFCYNIKSDSWKILPQSHLIDLPGSSLSSYGEKIFLTGGCKGPCCRTVRLHIAESYHDATDQTWCYCPVKNDFFLVSAMKTPRTMHTSVMALNRLFVFGGKTRGSQDIKSLLDVESYNPLSKEWVSVSPLPRGIYYPEASACQNVIYVLGSEVEITDAFNPSLDCFFKYNATTDQWSELVAEFGQFFHATLIKAVPVNCTLYICDLSTYKVYSFCPDTCVWKGEGSFECAGFNAGAVGIEDKIYILGGDYAPDEITDEVQVYHSSRSEWEEVSPMPKALTEFYCQAIQFNKYRDPWFSNHF", "length": 607, "header": "tr|A0A4X1TL05-1|A0A4X1TL05_PIG Isoform 1 of Kelch repeat and BTB domain containing 3 OS=Sus scrofa OX=9823 GN=KBTBD3 PE=4 SV=1 CANONICAL=A0A4X1TL05-1" }, "locus": { "chromosome": "9", "start_pos": 35884275, "end_pos": 35877291, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016363.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016363.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015924.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015924.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TL05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL05" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524698", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524698", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HPZ2-1", "protein_name": "Kelch repeat and BTB domain-containing protein 3 isoform X1", "gene_name": "Kbtbd3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDNSYDFNEQGSWNGISSGKKKNFLTSEDHGQKILSVLQSFREQNVFYDFKIIMKEEIIPCHRCVLAACSDFFRAMFEVNMKERDDGSVTITNLSSKAVKAFLDYAYTGKARITDDNVEMFFQLSSFLQVPFLSKACSDFLIKSINLVNCLHLLSLSDSYGSTHLFSHALCFVQHHFHLLFKSREFLEMNCGVLEKCLESDELNVPEEEIVLKVVITWIKYNLESRQKHLPHLIRKVRLHQLSEDTLQDCLLNEECLLKSTNCFDIIVDAIKCVQGSSGLFPDARPSTTEKYIFIHKTEENGENQYTFCYNIKTDSWKILPQSHLIDLPGSSLSSYGEKIFLTGGCKGKCCRKVRLHIAESYHDATDQTWCYCPVKNEFFLVSTMKTPRTMHSSVMALNRLFVIGGKTRGSQDIKSLLDVESYDPLSREWTSVSPLPRGIYYPEASACQNVIYVLGSEVEIADAFNPSLDCFFKYNATTDQWSELVAEFGQFFHATLIKAVPVNCTLYICDLSTYKVYSFCPDTCVWKGEGSFECAGFNAGAIGIEDKIYILGGDYAPDEITDEVQVYHSSRSEWEEVSPMPRALTEFYCQVIQFNKYRDPWFSNHF", "length": 607 }, "evidence": [ { "id": "A0A4X1TL05", "url": "https://omabrowser.org/oma/group/A0A4X1TL05/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AC58HE66-1", "protein_name": "Kelch repeat and BTB domain-containing protein 3 isoform X1", "gene_name": "kbtbd3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MCLSSSVCVCVSSSVCVCLLMAVSPQRCVFLRCECVGQQIISVLQGFRQRKLLLDFSIHVQDETLLCHRCVLAACSHFFRAMFELDMRECVDGSVTLSNLSAQAVHTFLDFAYSGEIEVREDNVEMLFQMASFLQVDFLLRSCSDFLLESLDVSNCLHLLELAEGYGSTQLLRGAIDFITQNFQTVSCSVEFLELPSPVLERVLLSDELRVPDEETVLQALLCWVKHDPSTRTSLMQQLLACVRLHHIPIATLENAAQSDMLTDECRNMLTHALAQTQQFSGLFTDARVSTTSTYIFVHKTEESMRHTFCYEIVSDRWTPLPEDAMRILELPGSVMTSFAEKLFISGGCHSDCPRSIRTHISSPHHEATDEFWCYCPIAHSFTPAPRMRHTRTMHTCVVALQRLYVIGGKPRSSRNVPSIVDVDYYDPLMREWISVSPLPKGIYFPEASVCGNVIYALGSEVEFSDAFNPLLDCFFRYDAVADQWSHLVAEFGQFFHARLVKSVCVNETLYLCDLSTYKVYSFCADEGVWKGEGSFECAGFNAAAVGVRGKIFILGGDYSPDEISDEVQVYDSSRSEWQEVSPMPRALTEFHCQVLNFSRYRDPWHSSATGGAEE", "length": 615 }, "evidence": [ { "id": "A0A4X1TL05", "url": "https://omabrowser.org/oma/group/A0A4X1TL05/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D4A7F5-1", "protein_name": "Kelch repeat and BTB domain containing 3", "gene_name": "Kbtbd3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKSYNLNEQSSWNGISSEKKKNFLASEDHGQKILSVLQSFREQNVFYDFKIIMKEEIIPCHRCVLAACSDFFRAMFEVNMKERDDGSVTITNLSSKAVKAFLDYAYTGKTRITDDNVEMFFQLSSFLQVSFLSKACSDFLIKSISLVNCLHLLSLSDSYGSAQLFSHTLYFVQHHFHLLFKSRDFLEMNFGVLQKCLESDELNVPEEEMVLKAVLTWIKYNVESRQKHLPHLIAKVRLHQLSEASLQDCLLNEEYLLKSTNCFETIVDAIKRVQGSSGLFPDARPSTTEKYIFIHKTEENGENQYTFCYNIKTDSWKILSQSHLIDLPGSSLSSYGEKIFLTGGCKGKCCRKVRLHIAESYHDATDQTWCYCPIKNEFFFVSTMKTPRTMHTSVTALNRLFVIGGKTRGSQDIKSLLDVESYDPLSKEWTSVSPLPRGIYYPEASACQNVIYVLGSEVEIADAFNPSLDCFFKYNATTDQWSELVAEFGQFFHATLIKAVPVNCTLYICDLSTYKVYSFCPDTCVWKGEGSFECAGFNAGAIGIEDKIYILGGDYAPDEITDEVQVYHSSRSEWEEVSPMPRALTEFYCQIIQFNKYRDPWYSNHF", "length": 607 }, "evidence": [ { "id": "A0A4X1TL05", "url": "https://omabrowser.org/oma/group/A0A4X1TL05/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BHI4-1", "protein_name": "Kelch repeat and BTB domain-containing protein 3", "gene_name": "Kbtbd3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDNSYNLNEQSSWNGISSEKKKNYLASEDHGQKILSVLQSFREQNVFYDFKIIMKEEIIPCHRCVLAACSDFFRAMFEVNMKERDDGSVTITNLSSKAVKAFLDYAYTGKTRITDDNVEMFFQLSSFLQVSFLSKACSDFLIKSISLVNCLHLLSLSDSYGSAQLFSHTLYFVQHHFHLLYKSSDFLEMNFGVLQKCLESDELNVPEEEMVLKAVLTWIKYNLESRQKHLPHLITKVRLHQLSEDTLQDYLLNEEYLLKSTNCFDIIVDAIKCVQGSSGLFPDARPSTTEKYIFIHKTEENGENQYTFCYNIKTDSWKILPQSHLIDLPGSSLSSYGEKIFLTGGCKGKCCRRIRLHIAQSYHDATDQTWCYCPAKNEFFCVSAMKTPRTMHTSVMALNRLFVIGGKTRGSQDIKSLLDVESYNPLSREWTSVSPLPRGIYYPEASACQNIIYVLGSEVEIADAFNPSLDCFFKYNATTDQWSELVAEFGQFFHATLIKAVPVNCTLYICDLSTYKVYSFCPDTCVWKGEGSFECAGFNAGAIGIEDKIYILGGDYAPDEITDEVQVYHSSRSEWEEVSPMPRALTEFYCQVIQFNKYRDPWYSNHF", "length": 607 }, "evidence": [ { "id": "A0A4X1TL05", "url": "https://omabrowser.org/oma/group/A0A4X1TL05/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NAB2-1", "protein_name": "Kelch repeat and BTB domain-containing protein 3", "gene_name": "KBTBD3", "tax_id": 9606, "organism": "Homo sapiens", 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"https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TL05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL05" } ], "pmid": "" }, { "name": "Cul3-RING ubiquitin ligase complex", "id": "GO:0031463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031463", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TL05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL05" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TL05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL05" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TL05", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL05" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 476, "end_pos": 478, "annotation": "n_glycosylation_sequon" }, { "start_pos": 504, "end_pos": 506, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1TL05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TL05" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 48, "end_pos": 115, "start_aa": "Tyr", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 476, "end_pos": 478 }, { "start_pos": 504, "end_pos": 506 }, { "start_pos": 93, "end_pos": 95 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TLE5-1", "uniprot_ac": "A0A4X1TLE5", "uniprot_id": "A0A4X1TLE5_PIG", "mass": { "chemical_mass": 10949.0, "monoisotopic_mass": 10949.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "PMIS2 transmembrane protein", "type": "recommended", "evidence": [ { "id": "A0A4X1TLE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLE5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TLE5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLE5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLE5", "locus": {} } ], "crossref": [ { "id": "A0A4X1TLE5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TLE5", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR007593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ANKKSQW", "url": "https://omabrowser.org/oma/group/ANKKSQW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14768", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14768", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14768:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14768:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04505", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04505", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1TLE5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TLE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLE5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "PVGEEQGTVGPRPLTGPPEQTPEEMSFYAPDYLYLTIVALILFPPLGIPAILFSRKTKEANKNSKWEEAYINSGRTGWLDVFAILIGLGLIYYLVLFM", "length": 98, "header": "tr|A0A4X1TLE5-1|A0A4X1TLE5_PIG Isoform 1 of PMIS2 transmembrane protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A4X1TLE5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TLE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLE5/entry#A0A4X1TLE5-1", "sequence": { "sequence": "PVGEEQGTVGPRPLTGPPEQTPEEMSFYAPDYLYLTIVALILFPPLGIPAILFSRKTKEANKNSKWEEAYINSGRTGWLDVFAILIGLGLIYYLVLFM", "length": 98, "header": "tr|A0A4X1TLE5-1|A0A4X1TLE5_PIG Isoform 1 of PMIS2 transmembrane protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A4X1TLE5-1" }, "locus": { "chromosome": "6", "start_pos": 45018653, "end_pos": 45017898, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053203.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053203.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040044.3", "url": "https://www.ensembl.org/id/ENSSSCP00000040044.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TLE5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLE5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TLE5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLE5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TLT3-1", "uniprot_ac": "A0A4X1TLT3", "uniprot_id": "A0A4X1TLT3_PIG", "mass": { "chemical_mass": 39153.0, "monoisotopic_mass": 39153.0 }, "refseq": { "ac": "XP_001928582", "name": "TBC1 domain family member 21 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928582" }, "gene_names": [ { "name": "TBC1D21", "type": "recommended", "evidence": [ { "id": "A0A4X1TLT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3" } ] }, { "name": "TBC1D21", "type": "synonym", "evidence": [ { "id": "XP_001928582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928582" } ] } ], "protein_names": [ { "name": "TBC1 domain family member 21", "type": "recommended", "evidence": [ { "id": "A0A4X1TLT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3/entry#names_and_taxonomy" } ] }, { "name": "Male germ cell Rab GTPase-activating protein", "type": "synonym", "evidence": [ { "id": "A0A4X1TLT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3/entry#names_and_taxonomy" } ] }, { "name": "TBC1 domain family member 21 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001928582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928582" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TLT3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TBC1D21", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3", "locus": { "chromosome": "7", "start_pos": 59535593, "end_pos": 59548888, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001915", "url": "https://www.ensembl.org/id/ENSSSCG00000001915" } ] } } ], "crossref": [ { "id": "A0A4X1TLT3", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TLT3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100152488", "url": "https://www.ncbi.nlm.nih.gov/gene/100152488", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152488", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152488", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NIACDIQ", "url": "https://omabrowser.org/oma/group/NIACDIQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TLT3", "url": "https://www.orthodb.org/?gene=A0A4X1TLT3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22957", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22957:SF489", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957:SF489", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001928582", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928582", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TLT3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TLT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TLY3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TLY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TM16", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TM16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TM16-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TM16-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTLSPENSLSARQSASFILVKRKPPIDKTEWDGFFDENGHLAKSRDFICVNILERGLHPFVRTEAWKFLTGYYSWQSSQDERLTVDSTRRKNYEALCQMYEKIQPLLENLHRNFTETRNNITYDIQKLYDKDPLGNVLIDKKRLEKILLLSYVCNTEAEYQQGFHDMVMLFHLMVEHDHETFWLFQFFLQKTEHSCVINIGVGKNLDMLNILINFLDPVFSDHLKGKGAGAVQSLFPWFCLCFQHAFKSFDDVWRLWEVLLTGKPCRNSQVLVAYSMLQMVREQVLQESMTGDDILLACNNLIDLDADELISAACIVYAELIQKDVPQPLKDFLL", "length": 336, "header": "tr|A0A4X1TLT3-1|A0A4X1TLT3_PIG Isoform 1 of TBC1 domain family member 21 OS=Sus scrofa OX=9823 GN=TBC1D21 PE=4 SV=1 CANONICAL=A0A4X1TLT3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TLT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3/entry#A0A4X1TLT3-1", "sequence": { "sequence": "MTTLSPENSLSARQSASFILVKRKPPIDKTEWDGFFDENGHLAKSRDFICVNILERGLHPFVRTEAWKFLTGYYSWQSSQDERLTVDSTRRKNYEALCQMYEKIQPLLENLHRNFTETRNNITYDIQKLYDKDPLGNVLIDKKRLEKILLLSYVCNTEAEYQQGFHDMVMLFHLMVEHDHETFWLFQFFLQKTEHSCVINIGVGKNLDMLNILINFLDPVFSDHLKGKGAGAVQSLFPWFCLCFQHAFKSFDDVWRLWEVLLTGKPCRNSQVLVAYSMLQMVREQVLQESMTGDDILLACNNLIDLDADELISAACIVYAELIQKDVPQPLKDFLL", "length": 336, "header": "tr|A0A4X1TLT3-1|A0A4X1TLT3_PIG Isoform 1 of TBC1 domain family member 21 OS=Sus scrofa OX=9823 GN=TBC1D21 PE=4 SV=1 CANONICAL=A0A4X1TLT3-1" }, "locus": { "chromosome": "7", "start_pos": 59548703, "end_pos": 59535740, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002144.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002144.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002094.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002094.2" } ] } }, { "isoform_ac": "A0A4X1TLY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3/entry#A0A4X1TLY3-1", "sequence": { "sequence": "MTTLSPENSLSARQSASFILVKRKPPIDKTEWDGFFDENGHLAKSRDFICVNILERGLHPFVRTEAWKFLTGYYSWQSSQDERLTVDSTRRKNYEALCQMYEKIQPLLENLHRNFTETRNNIKYQQGFHDMVMLFHLMVEHDHETFWLFQFFLQKTEHSCVINIGVGKNLDMLNILINFLDPVFSDHLKGKGAGAVQSLFPWFCLCFQHAFKSFDDVWRLWEVLLTGKPCRNSQVLVAYSMLQMVREQVLQESMTGDDILLACNNLIDLDADELISAACIVYAELIQKDVPQPLKDFLL", "length": 299, "header": "tr|A0A4X1TLY3-1|A0A4X1TLY3_PIG Computationally mapped isoform of TBC1 domain family member 21 OS=Sus scrofa OX=9823 GN=TBC1D21 PE=4 SV=1 CANONICAL=A0A4X1TLT3-1" }, "locus": { "chromosome": "7", "start_pos": 59548703, "end_pos": 59535740, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071505.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071505.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065392.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065392.1" } ] } }, { "isoform_ac": "A0A4X1TM16-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3/entry#A0A4X1TM16-1", "sequence": { "sequence": "MTTLSPENSLSARQSASFILGLHPFVRTEAWKFLTGYYSWQSSQDERLTVDSTRRKNYEALCQMYEKIQPLLENLHRNFTETRNNITYDIQKLYDKDPLGNVLIDKKRLEKILLLSYVCNTEAEYQQGFHDMVMLFHLMVEHDHETFWLFQFFLQKTEHSCVINIGVGKNLDMLNILINFLDPVFSDHLKGKGAGAVQSLFPWFCLCFQHAFKSFDDVWRLWEVLLTGKPCRNSQVLVAYSMLQMVREQVLQESMTGDDILLACNNLIDLDADELISAACIVYAELIQKDVPQPLKDFLL", "length": 300, "header": "tr|A0A4X1TM16-1|A0A4X1TM16_PIG Computationally mapped isoform of TBC1 domain family member 21 OS=Sus scrofa OX=9823 GN=TBC1D21 PE=4 SV=1 CANONICAL=A0A4X1TLT3-1" }, "locus": { "chromosome": "7", "start_pos": 59548703, "end_pos": 59535740, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025925.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025925.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022655.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022655.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TLT3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152488", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152488", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MZW4-1", "protein_name": "TBC1 domain family member 21", "gene_name": "Tbc1d21", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTTLSPENSLSARRSATFILEKRNPPIDKTEWDSFFDENGHLAKTRDFICVNILERGLHPFVRTEAWKFLTGYYSWQSSRDERLMVDANRRRNYKVLCQMYEKIRPLLENLHGNFTETRNNIAYDIQKLYDKDPLGNVLVDKKKLEKTLLLSYVCNTKAEYQRGFHEMVMLFQLMVEHDHETFWLFQFFLQKTEHSCVINIGVGKNLDMLNSLIALLDPEFAEHLKGKGSGAVQSLFPWFCLCFQRAFKSFDDVWRLWEVLLTGKPCRNFQVLVAYSMLQMVREQALLESMSGDAILLACNNLIDLDADELISAACLVYAELMQKEIPGPLKDFFL", "length": 336 }, "evidence": [ { "id": "A0A4X1TLT3", "url": "https://omabrowser.org/oma/group/A0A4X1TLT3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9SBL3-1", "protein_name": "TBC1 domain family member 21", "gene_name": "TBC1D21", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTTLSPENSLSARQSASFILVKRKPPIDKTEWDGFFDENGHLAKSRDFICVNILERGLHPTVRTEAWKFLTGYYSWQSSQDERLTVDSTRRKNYEALCQMYQKIQPLLENLHRNFIETRNSITYDIKKLYDKDPLGNVLLDKKRLEKILLLSYVCNTQAEYQQGFHEMVMIFQLMVEHDHETFWLFQFFLQKTEHSCVINIGVGKNLDMLNTLINFLDPVFAEHLKGKGAGAVPSLFPWFCLCFQRAFKTFDDVWRLWEVLLTGKPCRNFQVLVAYSMLQMVRQQVLQESMTGDDILLACNNLIDLDADELISAACIVYAELIQKDVPQSLKDFFL", "length": 336 }, "evidence": [ { "id": "A0A4X1TLT3", "url": "https://omabrowser.org/oma/group/A0A4X1TLT3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E9PT72-1", "protein_name": "TBC1 domain family member 21", "gene_name": "Tbc1d21", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTLSPENSLSARRSATFILEKKNPPIDKAEWDSFFDENGHLAKSRDFICVNILERGLHPLVRADAWKFLTGYYSWQSSRDERLMVDSNRRRNYNSLCQMYEKIQPLLENLHGNFTETRNNIVYDIQKLYDKDPLGNVLVDKKKLEKTLLLSYVCNTKAEYQRGFHEMVMLFQLMVEHDHETFWLFQFFLQKTEHSCVINIGVGKNLDMLNNLITLLDPQFADHLKGKGSGAVQSLFPWFCLCFQRAFKSFDDVWRLWEVLLTGKPCRNFQVLVAYSMLQMVREQALLECMSGDAILMACNKLIDLDADELISAACVVYSELIQKEVPQALKDFFL", "length": 336 }, "evidence": [ { "id": "A0A4X1TLT3", "url": "https://omabrowser.org/oma/group/A0A4X1TLT3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8IYX1-1", "protein_name": "TBC1 domain family member 21", "gene_name": "TBC1D21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTTLSPENSLSARQSASFILVKRKPPIDKTEWDSFFDESGHLAKSRDFICVNILERGLHPFVRTEAWKFLTGYFSWQSSQDERLTVDSMRRKNYKALCQMYEKIQPLLENLHRNFTETRNNIARDIQKIYDKDPLGNVLIDKKRLEKILLLSYVCNTQAEYQQGFHEMMMLFQLMVEHDHETFWLFQFFLQKTEHSCVINIGVAKNLDMLSTLITFLDPVFAEHLKGKGAGAVQSLFPWFCFCFQRAFKSFDDVWRLWEVLLTGKPCRNFQVLVAYSMLQMVREQVLQESMGGDDILLACNNLIDLDADELISAACVVYAELIQKDVPQTLKDFFL", "length": 336 }, "evidence": [ { "id": "A0A4X1TLT3", "url": "https://omabrowser.org/oma/group/A0A4X1TLT3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D9D3-1", "protein_name": "TBC1 domain family member 21", "gene_name": "Tbc1d21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTTLSPENSLSARRSATFILEKRNPPIDKAEWDSFFDENGHLAKSRDFICINILERGLHPFVRTEAWKFLTGYYSWQSSRDERLMVDSNRRRNYNSLCQMYEKIQPLLENLHGNFTETRNNIAYDIQRLYDKDPLGNVLIDKKKLEKTLLLSYVCNTKAEYQRGFHEMVMLFQLMVEHDHETFWLFQFFLQKTEHSCVINIGVGKNLDMLNSLITLLDPEFAEHLKGKGSGAVQSLFPWFCLCFQRAFKTFDDVWRLWEVLLTGKPCRNFQVLVAYSMLQMVREQALLECMSGDAILMACNNLIDLDADELISAACVVYSELMQKEVPQPLKEFLL", "length": 336 }, "evidence": [ { "id": "A0A4X1TLT3", "url": "https://omabrowser.org/oma/group/A0A4X1TLT3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TLT3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3" } ], "pmid": "" }, { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TLT3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TLT3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TLT3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TLT3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3" } ], "pmid": "" }, { "name": "acrosomal vesicle", "id": "GO:0001669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001669", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TLT3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3" } ], "pmid": "" }, { "name": "sperm midpiece", "id": "GO:0097225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097225", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TLT3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "sperm axoneme assembly", "id": "GO:0007288", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007288", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TLT3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3" } ], "pmid": "" }, { "name": "plasma membrane to endosome transport", "id": "GO:0048227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048227", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TLT3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TLT3" } ], "pmid": "" }, { "name": "sperm mitochondrial sheath assembly", "id": 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TMR5-1", "uniprot_ac": "A0A4X1TMR5", "uniprot_id": "A0A4X1TMR5_PIG", "mass": { "chemical_mass": 79180.0, "monoisotopic_mass": 79180.0 }, "refseq": { "ac": "XP_020957520", "name": "protein lin-54 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957520" }, "gene_names": [ { "name": "LIN54", "type": "recommended", "evidence": [ { "id": "A0A4X1TMR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5" } ] }, { "name": "LIN54", "type": "synonym", "evidence": [ { "id": "XP_020957520", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957520" } ] } ], "protein_names": [ { "name": "Protein lin-54 homolog", "type": "recommended", "evidence": [ { "id": "A0A4X1TMR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5/entry#names_and_taxonomy" } ] }, { "name": "protein lin-54 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020957520", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957520" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TMR5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LIN54", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5", "locus": { "chromosome": "8", "start_pos": 135398263, "end_pos": 135330919, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009242", "url": "https://www.ensembl.org/id/ENSSSCG00000009242" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009242", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009242", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100511027", "url": "https://www.ncbi.nlm.nih.gov/gene/100511027", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028307", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028307", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "XKPVVVN", "url": "https://omabrowser.org/oma/group/XKPVVVN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12446:SF36", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12446:SF36", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03638", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03638", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1538133", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1538133", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020957520", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957520", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TMR5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TMR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVD6", "url": "https://www.uniprot.org/uniprotkb/F1RVD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVD6-1", "url": "https://www.uniprot.org/uniprotkb/F1RVD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LB53", "url": "https://www.uniprot.org/uniprotkb/I3LB53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LB53-1", "url": "https://www.uniprot.org/uniprotkb/I3LB53-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVVPAEVNSLLPEEIMDTGITLVDEDSIEAVIVSSPLPMETELEEIVNINSTGDSAATPISTEPITVYSNHTSQVAVNSTVTKADSNTTVKPAFPSGLHKLGAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQPQAQKVTTQAQSGDAKLPPQQIKVVTIGGRPEVKPVIGVSALTPGSQLINTTTQPSVLQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQVSPPVIAGRVLSQSTPGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKAVKSAVQAIAVGGVSTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLVTATTASSSAQPVSQNPSTNTQPLQQAKPVGVSATPVRMSVPLVSAQAVKQVVPKPINPTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIASSSNFTGTPAIQSQARLPFNGIIPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGESKAAAERMILEEFGRCLMSVINSAGKAKRDPCAMNC", "length": 748, "header": "tr|A0A4X1TMR5-1|A0A4X1TMR5_PIG Isoform 1 of Protein lin-54 homolog OS=Sus scrofa OX=9823 GN=LIN54 PE=3 SV=1 CANONICAL=A0A4X1TMR5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TMR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5/entry#A0A4X1TMR5-1", "sequence": { "sequence": "MEVVPAEVNSLLPEEIMDTGITLVDEDSIEAVIVSSPLPMETELEEIVNINSTGDSAATPISTEPITVYSNHTSQVAVNSTVTKADSNTTVKPAFPSGLHKLGAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQPQAQKVTTQAQSGDAKLPPQQIKVVTIGGRPEVKPVIGVSALTPGSQLINTTTQPSVLQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQVSPPVIAGRVLSQSTPGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKAVKSAVQAIAVGGVSTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLVTATTASSSAQPVSQNPSTNTQPLQQAKPVGVSATPVRMSVPLVSAQAVKQVVPKPINPTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIASSSNFTGTPAIQSQARLPFNGIIPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGESKAAAERMILEEFGRCLMSVINSAGKAKRDPCAMNC", "length": 748, "header": "tr|A0A4X1TMR5-1|A0A4X1TMR5_PIG Isoform 1 of Protein lin-54 homolog OS=Sus scrofa OX=9823 GN=LIN54 PE=3 SV=1 CANONICAL=A0A4X1TMR5-1" }, "locus": { "chromosome": "8", "start_pos": 135396181, "end_pos": 135346401, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050831.2", "url": "https://www.ensembl.org/id/ENSSSCT00000050831.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032650.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032650.1" } ] } }, { "isoform_ac": "F1RVD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5/entry#F1RVD6-1", "sequence": { "sequence": "MEVVPAEVNSLLPEEIMDTGITLVDEDSIEAVIVSSPLPMETELEEIVNINSTGDSAATPISTEPITVYSNHTSQVAVNSTVTKADSNTTVKPAFPSGLHKLGAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQPQAQKVTTQAQSGDAKLPPQQIKVVTIGGRPEVKPVIGVSALTPGSQLINTTTQPSVLQTQQLKTAVKSAVQAIAVGGVSTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLVTATTASSSAQPVSQNPSTNTQPLQQAKPVGVSATPVRMSVPLVSAQAVKQVVPKPINPTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIASSSNFTGTPAIQSQARLPFNGIIPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGESKAAAERMILEEFGRCLMSVINSAGKAKRDPCAMNC", "length": 657, "header": "tr|F1RVD6-1|A0A4X1TMR5_PIG Computationally mapped isoform of Protein lin-54 homolog OS=Sus scrofa OX=9823 GN=LIN54 PE=3 SV=4 CANONICAL=A0A4X1TMR5-1" }, "locus": { "chromosome": "8", "start_pos": 135396181, "end_pos": 135346401, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010122.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010122.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009856.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009856.4" } ] } }, { "isoform_ac": "I3LB53-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5/entry#I3LB53-1", "sequence": { "sequence": "MEVVPAEIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQVSPPVIAGRVLSQSTPGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKAVKSAVQAIAVGGVSTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLVTATTASSSAQPVSQNPSTNTQPLQQAKPVGVSATPVRMSVPLVSAQAVKQVVPKPINPTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIASSSNFTGTPAIQSQARLPFNGIIPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGESKAAAERMILEEFGRCLMSVINSAGKAKRDPCAMNC", "length": 528, "header": "tr|I3LB53-1|A0A4X1TMR5_PIG Computationally mapped isoform of Protein lin-54 homolog OS=Sus scrofa OX=9823 GN=LIN54 PE=3 SV=3 CANONICAL=A0A4X1TMR5-1" }, "locus": { "chromosome": "8", "start_pos": 135396181, "end_pos": 135346401, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029534.3", "url": "https://www.ensembl.org/id/ENSSSCT00000029534.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021272.3", "url": "https://www.ensembl.org/id/ENSSSCP00000021272.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 279, "start_aa": "Thr", "end_pos": 279, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr279", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 673, "start_aa": "Thr", "end_pos": 673, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr673", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LB53", "url": "https://www.uniprot.org/uniprotkb/I3LB53" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1538133", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1538133", "resource": "Reactome", "description": "G0 and Early G1" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LVV1-1", "protein_name": "Protein lin-54 homolog", "gene_name": "LIN54", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEVVPAEVNSLLPEEIMDTGITLVDDDSIEAVIVSSPIPMETELEEIVNINSTGDSAATPISTEPITVHSNHTTRVAVNTTVTKADSNTTVKPAFPSGLQKLGAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQPQAQKVTTQAQSGDAKLPPQQIKVVTIGGRPEVKPVIGVSALTPGSQLLNTTTQPSVLQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQVSPPVIAGRVLSQSTPGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKAVKSTVQTITVGGVSTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLVTATTASSSTQPVSQNPSTNTQPLQQAKPVVVNTTPVRMSVPLVSAQTVKQVVPKPINPTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIASNSNFTGTPGIQTQARLPFNGIIPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPAPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAKSDPCAMNC", "length": 748 }, "evidence": [ { "id": "A0A4X1TMR5", "url": "https://omabrowser.org/oma/group/A0A4X1TMR5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V0XF65-1", "protein_name": "Protein lin-54 homolog", "gene_name": "LIN54", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEVVSAEVNSLLPEEIMDTGITLVEDDSIEAVIVSSPMGDSIPMETELEEIVNISSTSDASVTTTATVTAEPVTAPSNHSGDVTANATTIKTEGNSVVKPAFQSGLHKLGAQTPVTISANQIILNKTTDLKIGNQSIKPDGQKLIVTTLGKTGQPIVLALPRCQLPQAQKTVSQTQGGDSKVQGQQIKVVIGGRSEVKPVVGVSALTQGSQLINTAAQPSVLQTQQLKTVQIAKKTRTATSGPVITKLIFAKPINSKAVTGQTTQVSPVIAGRVVSQSTPGTPPKTITISESGVIGSSLSTTTQQTPNKIAISPLKSPNKAVKSAVQAITVGGVGTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLVTATTANSSTQSASQNPSTNTQPLQQAKPVVVNATPVRMSVPIVPAQTVKQVVPKPLNPTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQQSSYVSIASNTGFTGTSSIQSQARLPFNGIIPSESANRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLDHENDRQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCVGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALSSGGGKLPFTFVTKEVADATCECLLAQAEQAEKMGKSKAAAERMILEEFGRCLMRVINSAGKSKSDPCAMNC", "length": 750 }, "evidence": [ { "id": "A0A4X1TMR5", "url": "https://omabrowser.org/oma/group/A0A4X1TMR5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3IA34-1", "protein_name": "Protein lin-54 homolog", "gene_name": "Lin54", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEVVPAEVNSLLPEEIMDTAITLVDEDSIEAVIVSSPIPMETELEEIVNINSTGDSAATPISTEPITVYSTHTNQVAVNTTVTKAESNTTVKPAFPSGLQKLGAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQLPQAQKVTAQAQPGDAKLPPQQIKVVTIGGRPEVKPVIGVSALTPGSQLINTTTQPSVLQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQVSPPVITGRVLSQSTPGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKAVKSAVQTITVGGMSTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLVTATTASSSAQPASQNPSVNTQPLQQAKPVVVNTTPVRMSVPFVPTQAVKQVVPKPINSTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIASNSNFTGTSGIQTQARLPFNGIIPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAKSDPCAMHC", "length": 749 }, "evidence": [ { "id": "A0A4X1TMR5", "url": "https://omabrowser.org/oma/group/A0A4X1TMR5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q08CM4-1", "protein_name": "Protein lin-54 homolog", "gene_name": "lin54", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDVVSPELNSLLPDEIMDTEAMDEDPPASHLTPPPQSAPESAQVPMETEVPEIISICPTTASMQAISTNAKSTTSSTTQLLLTPSSSSSTTTKNATPTLPKIPSLSVPPNHQLIINKVAADGKSPGGAVIKQEGQKLLVAGLSKTGQPIMLALPHAWNKPATSQGSGDAKSQPTQIKMVTAMGKPVIAVSSASQLVASSTPLQAQHLKTLQITKKPPVSTAGPMITKLIITKALNNKVLSSPGSVSPVVTGRVVSQSTPLTPPRTIAIGETISTVPQNAATNSKVAISPLKSPSKLTVVSVTSQSSNSPQKSMTLPLNVALGQQILTVQQSAVTSPAKAGSSQSTTQTVKPVQTVTVPTSQFKTIIPLTTPPNVQQIQVPGSRFHYVRLVTATTGSSTVQTGGSTNTNPSIQPAKPVMMNAAVRMSVPIVPAQTAKQVVPKPLSSAAQVVTTSQTPQRLIMPATHLPQIQPNLTNLPPGTVLAPAHGSGNVGYAVLPAPYVTQIPQPAFVTLTSSSTFSTATPSQAQARLSLNGLSTSEANSRPRKPCNCTRSQCLKLYCDCFANGEFCNNCNCVNCFNNLDHESERLKAIKACLDRNPVAFKPKIGKGKEGESDRRHSKGCNCKKSGCLKNYCECYEAKIMCSSICKCMGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRTTPAITSGGGKLPYTFVTKEVAEATCDCLLEQAEQAELTNQPQAMAERLILEEFGRCLHRIISFAGKAKTDCPINC", "length": 771 }, "evidence": [ { "id": "A0A4X1TMR5", "url": "https://omabrowser.org/oma/group/A0A4X1TMR5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q571G4-1", "protein_name": "Protein lin-54 homolog", "gene_name": "Lin54", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVVPAEVNSLLPDDIMDTAITLVDEDSIEAVIVSSPIPMETELEEIVNINSTGDSTATPISTEPITVYSNHTNQVAVNTTVSKADSNTTVKPAFPSGLQKLGAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQLPQAQKVTAQAQPGDAKLPPQQIKVVTIGGRPEVKPVIGVSALTPGSQLINTTTQPSVLQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQASPPVVTGRVLSQSTPGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKTVKSAVQTITVGGMSTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLVTATTASSSAQPVSQSPSVNTQPLQQAKPVVVNTTPVRMSVPFVQAQAVKQVVPKPINSTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIASNSNFTGTSGIQTQARLPFNGIIPSESTSRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSAGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAKSDPCAMHC", "length": 749 }, "evidence": [ { "id": "A0A4X1TMR5", "url": "https://omabrowser.org/oma/group/A0A4X1TMR5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q641Z1-1", "protein_name": "Protein lin-54 homolog", "gene_name": "Lin54", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVVPAEVNSLLPDDIMDTAITLVDEDSIEAVIVSSPIPMETELEEIVSINSTGDSTATPISTEPITVYSNHTNQVAVNTTVSKADSNTTVKPAFPSGLQKLGAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQLPQAQKVTAQAQPGDAKLPPQQIKVVTIGGRPEVKPAIGVSALTPGSQLINTTTQPSVLQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQASPPVVTGRVLSQSAPGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKTVKSAVQTITVGGMSTSQFKTIIPLAAAPNVQPIQVPGSKFHYVRLVTATTAGSSAPPVSQSPSVNTQPLQQAKPVVVNTTPVRMSVPFVQAQAVKQVVPKPINSTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIAGNSNFTGTSGIQTQARVSFNGIIPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAKSDPCAMHC", "length": 749 }, "evidence": [ { "id": "A0A4X1TMR5", "url": "https://omabrowser.org/oma/group/A0A4X1TMR5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6MZP7-1", "protein_name": "Protein lin-54 homolog", "gene_name": "LIN54", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEVVPAEVNSLLPEEIMDTGITLVDDDSIEAVIVSSPIPMETELEEIVNINSTGDSTATPISTEPITVYSNHTNQVAVNTTITKADSNTTVKPAFPSGLQKLGAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQLPQAQKVTTQAQSGDAKLPPQQIKVVTIGGRPEVKPVIGVSALTPGSQLINTTTQPSVLQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQVSPPVIAGRVLSQSTPGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKAVKSTVQTITVGGVSTSQFKTIIPLATAPNVQQIQVPGSKFHYVRLVTATSASSSTQPVSQNPSTNTQPLQQAKPVVVNTTPVRMSVPIVSAQAVKQVVPKPINPTSQIVTTSQPQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIASNSTFTGTSGIQTQARLPFNGIIPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKAKSDPCAMNC", "length": 749 }, "evidence": [ { "id": "A0A4X1TMR5", "url": "https://omabrowser.org/oma/group/A0A4X1TMR5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "minor groove of adenine-thymine-rich DNA binding", "id": "GO:0003680", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003680", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TMR5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TMR5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5" } ], "pmid": "" }, { "name": "transcription regulatory region nucleic acid binding", "id": "GO:0001067", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001067", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TMR5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TMR5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TMR5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5" } ], "pmid": "" }, { "name": "RNA polymerase II transcription repressor complex", "id": "GO:0090571", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090571", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TMR5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TMR5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TMR5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 297, "end_pos": 299, "annotation": "n_glycosylation_sequon" }, { "start_pos": 448, "end_pos": 450, "annotation": "n_glycosylation_sequon" }, { "start_pos": 493, "end_pos": 495, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" }, { "start_pos": 525, "end_pos": 527, "annotation": "n_glycosylation_sequon" }, { "start_pos": 549, "end_pos": 551, "annotation": "n_glycosylation_sequon" }, { "start_pos": 71, "end_pos": 73, "annotation": "n_glycosylation_sequon" }, { "start_pos": 79, "end_pos": 81, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1TMR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR5" }, { "id": "PS51634", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51634" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CRC", "eco_id": "ECO_0000259", "start_pos": 520, "end_pos": 633, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 279, 673 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 130, "end_pos": 132 }, { "start_pos": 210, "end_pos": 212 }, { "start_pos": 297, "end_pos": 299 }, { "start_pos": 448, "end_pos": 450 }, { "start_pos": 493, "end_pos": 495 }, { "start_pos": 51, "end_pos": 53 }, { "start_pos": 525, "end_pos": 527 }, { "start_pos": 549, "end_pos": 551 }, { "start_pos": 71, "end_pos": 73 }, { "start_pos": 79, "end_pos": 81 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TMR7-1", "uniprot_ac": "A0A4X1TMR7", "uniprot_id": "A0A4X1TMR7_PIG", "mass": { "chemical_mass": 8845.0, "monoisotopic_mass": 8845.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RING-type domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A4X1TMR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TMR7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TMR7", "locus": {} } ], "crossref": [ { "id": "A0A4X1TMR7", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TMR7", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018957", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018957", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47048", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47048", 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Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FVCGGFH", "url": "https://omabrowser.org/oma/group/FVCGGFH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TNF3", "url": "https://www.orthodb.org/?gene=A0A4X1TNF3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44566", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44566", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44566:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44566:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020955374", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955374", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TNF3", "url": 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"MASLVAYEDSDSEAEAEPAGSFNPAGQMEDASAAAPSHRWALASDSLDVADAGAQPAKREDPAGRRLPLVRLWRNDPGSRPSQRLLWPRPEPEVTAPPSQPPRPSLWTSQTPAGHVPLAAARLQQAKPPWGAYDSPEASFRARTESERPGSNGSSLQRKRCEDSVVPYTPKRLRHLQALSAEAGKGEDAEAQGPSGRRPPAPLCVGPQVSEFIQPYLDGQHKETTIPKKVLFHLRGHRGPVNSVQWCPVFAKSHMLLSTSMDKTFKVWNAVDSGSCLQTYFLHSEAVRAARWSPCGRRILSGGFDFALHLTDLETGTQLFSGQSGFRITTLKFHPRDHSLFVCGGFSSEMKAWDLRTSKVVRSYKATVQQTLDVLFLREGTEFLSSTDASSRDSADRTIIAWDFRSAAKISNQIFHERYTCPSLTLHPREPVFLAQTNGNYLALFSAVWPYRMSRRRRYEGHKVEGYSVGCECSPDGDLLVTGSADGRILMYSFRTASRARTLHGHTQACVGTTFHPVLPSMLATCSWEGDIKIWH", "length": 536, "header": "tr|A0A4X1TNF3-1|A0A4X1TNF3_PIG Isoform 1 of WD repeat domain 25 OS=Sus scrofa OX=9823 GN=WDR25 PE=4 SV=1 CANONICAL=A0A4X1TNF3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TNF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNF3/entry#A0A4X1TNF3-1", "sequence": { "sequence": "MASLVAYEDSDSEAEAEPAGSFNPAGQMEDASAAAPSHRWALASDSLDVADAGAQPAKREDPAGRRLPLVRLWRNDPGSRPSQRLLWPRPEPEVTAPPSQPPRPSLWTSQTPAGHVPLAAARLQQAKPPWGAYDSPEASFRARTESERPGSNGSSLQRKRCEDSVVPYTPKRLRHLQALSAEAGKGEDAEAQGPSGRRPPAPLCVGPQVSEFIQPYLDGQHKETTIPKKVLFHLRGHRGPVNSVQWCPVFAKSHMLLSTSMDKTFKVWNAVDSGSCLQTYFLHSEAVRAARWSPCGRRILSGGFDFALHLTDLETGTQLFSGQSGFRITTLKFHPRDHSLFVCGGFSSEMKAWDLRTSKVVRSYKATVQQTLDVLFLREGTEFLSSTDASSRDSADRTIIAWDFRSAAKISNQIFHERYTCPSLTLHPREPVFLAQTNGNYLALFSAVWPYRMSRRRRYEGHKVEGYSVGCECSPDGDLLVTGSADGRILMYSFRTASRARTLHGHTQACVGTTFHPVLPSMLATCSWEGDIKIWH", "length": 536, "header": "tr|A0A4X1TNF3-1|A0A4X1TNF3_PIG Isoform 1 of WD repeat domain 25 OS=Sus scrofa OX=9823 GN=WDR25 PE=4 SV=1 CANONICAL=A0A4X1TNF3-1" }, "locus": { "chromosome": "7", "start_pos": 121384046, "end_pos": 121244802, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041419.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041419.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041645.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041645.1" } ] } }, { "isoform_ac": "A0A4X1TNH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNF3/entry#A0A4X1TNH1-1", "sequence": { "sequence": "MVDPCQAWGWMRACKVWNAVDSGSCLQTYFLHSEAVRAARWSPCGRRILSGGFDFALHLTDLETGTQLFSGQSGFRITTLKFHPRDHSLFVCGGFSSEMKAWDLRTSKVVRSYKATVQQTLDVLFLREGTEFLSSTDASSRDSADRTIIAWDFRSAAKISNQIFHERYTCPSLTLHPREPVFLAQTNGNYLALFSAVWPYRMSRRRRYEGHKVEGYSVGCECSPDGDLLVTGSADGRILMYSFRTASRARTLHGHTQACVGTTFHPVLPSMLATCSWEGDIKIWH", "length": 285, "header": "tr|A0A4X1TNH1-1|A0A4X1TNH1_PIG Computationally mapped isoform of WD repeat domain 25 OS=Sus scrofa OX=9823 GN=WDR25 PE=4 SV=1 CANONICAL=A0A4X1TNF3-1" }, "locus": { "chromosome": "7", "start_pos": 121384046, "end_pos": 121245935, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002795.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002795.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002724.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002724.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TNF3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNF3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513744", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513744", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E9Q349-1", "protein_name": "WD repeat-containing protein 25", "gene_name": "Wdr25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASLVAYDDSDSETEADPARSGDAAGQISDASGMSRPSGMGFASSTVGVTKEGAQHTGNSPNEDPGMQRLPLARLWRSDPGSCPSQRLQWPSKEPDTTFPPSEPPRPSLWMSRAPVGHVPLAAACLKPLKPAWDVLKPSHDQSTFESTAGNASSSQRKRGEDCVLPYIPKRLRQLQALNPEAGGGKDGEPPGPPAGCAPAPLCVAPTVSEFIQPYLNSQYRETTVPKKVLFHLRGHRGPVNSIQWCPVFCKSHMLLSASMDKTFKVWNAVDSGHCLQTYSVHSEAVRAARWSPCGRRILSGGFDFALHLTDLETGTQVFSGQSDFRVTTLKFHPKDHNVFLCGGFSSEIKAWDMRTGKVVKGYKATIQQTLDILFLQEGSEFLSSTDASTRDSADRTIIAWDFRTAAKISNQIFHERYTCPSLALHPREPVFLAQTNGNYLALFSSVWPYRMSRRRRYEGHKVEGYAVGCECSPCGDLLVTGSADGRVLMFSFRTASRACTLQGHTQACLGTTYHPVLPSVLGTCSWGGDIKIWH", "length": 535 }, "evidence": [ { "id": "A0A4X1TNF3", "url": "https://omabrowser.org/oma/group/A0A4X1TNF3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q64LD2-1", "protein_name": "WD repeat-containing protein 25", "gene_name": "WDR25", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTARTLSLMASLVAYDDSDSEAETEHAGSFNATGQQKDTSGVARPPGQDFASGTLDVPKAGAQPTKHGSCEDPGGYRLPLAQLGRSDWGSCPSQRLQWPGKEPQVTFPIKEPSCSSLWTSHVPASHMPLAAARFKQVKLSRNFPKSSFHAQSESETVGKNGSSFQKKKCEDCVVPYTPRRLRQRQALSTETGKGKDVEPQGPPAGRAPAPLYVGPGVSEFIQPYLNSHYKETTVPRKVLFHLRGHRGPVNTIQWCPVLSKSHMLLSTSMDKTFKVWNAVDSGHCLQTYSLHTEAVRAARWAPCGRRILSGGFDFALHLTDLETGTQLFSGRSDFRITTLKFHPKDHNIFLCGGFSSEMKAWDIRTGKVMRSYKATIQQTLDILFLREGSEFLSSTDASTRDSADRTIIAWDFRTSAKISNQIFHERFTCPSLALHPREPVFLAQTNGNYLALFSTVWPYRMSRRRRYEGHKVEGYSVGCECSPGGDLLVTGSADGRVLMYSFRTASRACTLQGHTQACVGTTYHPVLPSVLATCSWGGDMKIWH", "length": 544 }, "evidence": [ { "id": "A0A4X1TNF3", "url": "https://omabrowser.org/oma/group/A0A4X1TNF3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 152, "end_pos": 154, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 152, "end_pos": 154 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TNR4-1", "uniprot_ac": "A0A4X1TNR4", "uniprot_id": "A0A4X1TNR4_PIG", "mass": { "chemical_mass": 69020.0, "monoisotopic_mass": 69020.0 }, "refseq": {}, "gene_names": [ { "name": "RUFY2", "type": "recommended", "evidence": [ { "id": "A0A4X1TNR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNR4" } ] } ], "protein_names": [ { "name": "RUN and FYVE domain containing 2", "type": "synonym", "evidence": [ { "id": "A0A4X1TNR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNR4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TNR4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNR4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RUFY2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNR4", "locus": { "chromosome": "14", "start_pos": 71498651, "end_pos": 71547311, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010239", "url": "https://www.ensembl.org/id/ENSSSCG00000010239" } ] } } ], "crossref": [ { "id": "A0A4X1TNR4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TNR4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010239", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010239", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000306", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000306", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047335", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047335", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IRHDECI", "url": "https://omabrowser.org/oma/group/IRHDECI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45956", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45956", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45956:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45956:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01363", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01363", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02759", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02759", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1TNR4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TNR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNR4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD60", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD60-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD60-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA73-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA73-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRDIKRTTKDPTAVERANLLNMAKLSIKGLIESALSFGRTLDSDYPPLQQFFVVMEHCLKHGLKVRKSFLSYNKTIWGPLELVEKLYPEAEEIGASVRDLPGLKTPLGRARAWLRLALMQKKMADYLRCLIIQRDLLSEFYEYHALMMEEEGAVIGEDLDSQVGVIDFSMYLKNEEDIGNKERNVQIAAILDQKNYVEELNRQLNSTVSSLHSRVDSLEKSNTKLIEELAIAKNNIIKLQEENHQLRSENKLILMKTQQHLEVTKVDVETELQTYKHSRQGLDEMYNEARRQLRDESQLRQDVENELAVQVSMKHEIELAMKLLEKDIHEKQDTLIGLRQQLEEVKAINIEMYQKLQGSEDGLKEKNEIIARLEEKTSKITAAMRQLEQRLQQAEKAQMDTEDEDKKCLQECQSKFDSLQKQISQKEKQLVQLETDLKIEKEWRQTLQEDLQKEKDTLSHLRNETQQIISLKKEFLNLQDENQQLKKIYHEQEQALQELGNKLSESKLKIEDIKEANKALQGLVWLKDKEATHCKLCEKEFSLSKRKHHCRNCGEIFCNACSDNELPLPSSPKPVRVCDSCHALLIQRCSSNLP", "length": 594, "header": "tr|A0A4X1TNR4-1|A0A4X1TNR4_PIG Isoform 1 of RUN and FYVE domain containing 2 OS=Sus scrofa OX=9823 GN=RUFY2 PE=1 SV=1 CANONICAL=A0A4X1TNR4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TNR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNR4/entry#A0A4X1TNR4-1", "sequence": { "sequence": "MRDIKRTTKDPTAVERANLLNMAKLSIKGLIESALSFGRTLDSDYPPLQQFFVVMEHCLKHGLKVRKSFLSYNKTIWGPLELVEKLYPEAEEIGASVRDLPGLKTPLGRARAWLRLALMQKKMADYLRCLIIQRDLLSEFYEYHALMMEEEGAVIGEDLDSQVGVIDFSMYLKNEEDIGNKERNVQIAAILDQKNYVEELNRQLNSTVSSLHSRVDSLEKSNTKLIEELAIAKNNIIKLQEENHQLRSENKLILMKTQQHLEVTKVDVETELQTYKHSRQGLDEMYNEARRQLRDESQLRQDVENELAVQVSMKHEIELAMKLLEKDIHEKQDTLIGLRQQLEEVKAINIEMYQKLQGSEDGLKEKNEIIARLEEKTSKITAAMRQLEQRLQQAEKAQMDTEDEDKKCLQECQSKFDSLQKQISQKEKQLVQLETDLKIEKEWRQTLQEDLQKEKDTLSHLRNETQQIISLKKEFLNLQDENQQLKKIYHEQEQALQELGNKLSESKLKIEDIKEANKALQGLVWLKDKEATHCKLCEKEFSLSKRKHHCRNCGEIFCNACSDNELPLPSSPKPVRVCDSCHALLIQRCSSNLP", "length": 594, "header": "tr|A0A4X1TNR4-1|A0A4X1TNR4_PIG Isoform 1 of RUN and FYVE domain containing 2 OS=Sus scrofa OX=9823 GN=RUFY2 PE=1 SV=1 CANONICAL=A0A4X1TNR4-1" }, "locus": { "chromosome": "14", "start_pos": 71544880, "end_pos": 71500833, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011206.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011206.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010915.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010915.3" } ] } }, { "isoform_ac": "A0A5G2QD60-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNR4/entry#A0A5G2QD60-1", "sequence": { "sequence": "MVRKSFLSYNKTIWGPLELVEKLYPEAEEIGASVRDLPGLNEFYEYHALMMEEEGAVIVGLVGLNVIDANLCVKGEDLDSQVGVIDFSMYLKNEEDIGNKERNVQIAAILDQKNYVEELNRQLNSTVSSLHSRVDSLEKSNTKLIEELAIAKNNIIKLQEENHQLRSENKLILMKTQQHLEVTKVDVETELQTYKHSRQGLDEMYNEARRQLRDESQLRQDVENELAVQVSMKHEIELAMKLLEKDIHEKQDTLIGLRQQLEEVKAINIEMYQKLQGSEDGLKEKNEIIARLEEKTSKITAAMRQLEQSDNDLLTQTRTIAMSLVKCASNDTQDQYKLVKDISF", "length": 344, "header": "tr|A0A5G2QD60-1|A0A4X1TNR4_PIG Computationally mapped isoform of RUN and FYVE domain containing 2 OS=Sus scrofa OX=9823 GN=RUFY2 PE=1 SV=2 CANONICAL=A0A4X1TNR4-1" }, "locus": { "chromosome": "14", "start_pos": 71547202, "end_pos": 71523535, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077881.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077881.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059985.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059985.2" } ] } }, { "isoform_ac": "A0A5G2RA73-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNR4/entry#A0A5G2RA73-1", "sequence": { "sequence": "MATKDPTAVERANLLNMAKLSIKGLIESALSFGRTLDSDYPPLQQFFVVMEHCLKHGLKVRKSFLSYNKTIWGPLELVEKLYPEAEEIGASVRDLPGLNEFYEYHALMMEEEGAVIVGLVGLNVIDANLCVKGEDLDSQVGVIDFSMYLKNEEDIGNKERNVQIAAILDQKNYVEELNRQLNSTVSSLHSRVDSLEKSNTKLIEELAIAKNNIIKLQEENHQLRSENKLILMKTQQHLEVTKVDVETELQTYKHSRQGLDEMYNEARRQLRDESQLRQDVENELAVQVSMKHEIELAMKLLEKDIHEKQDTLIGLRQQLEEVKAINIEMYQKLQGSEDGLKEKNEIIARLEEKTSKITAAMRQLEQSDNDLLTQTRTIAMSLVKCASNDTQDQYKLVKDISF", "length": 402, "header": "tr|A0A5G2RA73-1|A0A4X1TNR4_PIG Computationally mapped isoform of RUN and FYVE domain containing 2 OS=Sus scrofa OX=9823 GN=RUFY2 PE=1 SV=1 CANONICAL=A0A4X1TNR4-1" }, "locus": { "chromosome": "14", "start_pos": 71547202, "end_pos": 71523535, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080125.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080125.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074214.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074214.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD60", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD60" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0B4LHR8-1", "protein_name": "RUN and FYVE domain-containing protein 2", "gene_name": "CG14261", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MRGLVEDTKRTKLSSANNNNLSSTSGSGRIKSSSLATGSSASGSSSKPLRSAVKTPTSGSATSLSSGTMAAKKAPQTGQQQVGKSAKSATAATPTGTTATAIGATATTRAQAAAAKSQKGQNPPSQQVQPKQQPPQPQQTQQQPLVLQQQQASNSSNTIALPKASHANTSEELAGGVQDTIYLCNFRVSVDGEWLCLKELQDIDVAGGTGNQAAQTSEKLAGGSSSQTGGFGSNYNVGSSSSKRNSKRFSGLSTGSGSGGNAGGGGGLDITDNARDTAEIERSNLVNICKLVVKELLEQSLRYGRMLDSDHLPLQHFFIVIEHVLGHGLRPKKGLLGPRKELWDLLQSVEHYCPEAQDITASVRDLPTVRTHIGRARAWLRIALMQKKLSDYLQALIEHREDSLFDYYEPHALMMSDEIVVIMGILVGLNVIDCNLCVKEEDLDSQQGVIDFSLYLRSSSRNADAAPEDSAPPALLDATGQGNMIAVLDQKNYIEELNRHLNATVGNLQAKVESLTTTNALMKEDLAIARNSLLALQAENQAMRQSTSAGDNNSTGSGGSSDKDKEKASEELVEERRKNSELEKELKLQVSLKAESDMAMKLLEKDIHEKQDTIVSLRRQLDDIKQINLEMYRKLQDCKASLTHKTELMTKLEVQKEDMASTIDQLEKKWSHDKSNLGEILKTTSQTLTTQVTASEERAARAEAESRIEREWRISLQEKELKLKEKIANLQGCLKELSEEKERNGKLKADLDKVRTQWSEAQTTLEELGIQLSVSKLKVSEMQDQERRQRQLLSGSAQSLQAMPEAVGSPGIWAPDSIATHCTACEREFNLTRRKHHCRSCGEIFCKACSEHTLPLLNAQGQPGKPVRVCDNCYAAK", "length": 877 }, "evidence": [ { "id": "A0A4X1TNR4", "url": "https://omabrowser.org/oma/group/A0A4X1TNR4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "A0A0G2K4D6-1", "protein_name": "RUN and FYVE domain containing 2", "gene_name": "Rufy2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQSREWWAEDWGEERCGIRSREPVPRGLRAGWGTERAGPPLGTAGECWRLAPPTTAAAQAAVLGCRLQVVMNTLKKGILPIMKRQVVWARGWVEESHLDGEWRKKMWADPGCFRLRRMSAYLAEMQTITEATKDPTAVERANLLNMAKLSIKGLIESALSFGRTLDSDYPPLQQFFVVMEHCLKHGLKVRKSFLSYNKTIWGPLELVEKLYPEAEEIGASVRDLPGLKTPLGRARAWLRLALMQKKMADYLRCLIIQRELLSEFYEYHALMMEEEGAVIVGLLVGLNVIDANLCVKGEDLDSQVGVIDFSMYLKNEEEIGNKERNVQIAAILDQKNYVEELNRQLNSTVSSLHSRVDSLEKSNTKLIEELAIAKNNIIKLQEENHQLRSENELILMRTRQHLEVTKVDVETELQTYKHSRQGLDEMYDDARRQLRDESQLRQDVENELSVQVGMKHEIELAMKLLEKDIHEKQDTLIGLRQQLEEVKAINIEMYQKLQGSEDGLKEKNEIIARLEEKTNKITTAMRQLEQRLQQAEKAQMEAEDEDEKYAQECLSKSDSLQRQISQKEQQLVQLETDLKIEKEWRQTLQEDLQKEKDVLSHLRHETQKIISLKKEFLNLQDENQQLKRIYHEQEQALQELGSKLCESKLKIDDIKEANKALQGLVWLKDKDATHCKLCEKEFSLSKRKTWQPLHLHVSQTLHLPLLLLCHRLQYQYERVLD", "length": 723 }, "evidence": [ { "id": "A0A4X1TNR4", "url": "https://omabrowser.org/oma/group/A0A4X1TNR4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0ZYI0-1", "protein_name": "RUN and FYVE domain-containing protein 2", "gene_name": "RUFY2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAVKDPTAVERANLLNMAKLSIKGLIESALSFGRTLDSDYPPLQQFFVVMEHCLKHGLKVRKSFLSYNKTIWGPLELVEKLYPEAEEIAASVRDLPGLKTPLGRARAWLRLALMQKKMADYLRCLIIQRELLSEFYEYHALMMEEEGAVIVGLLVGLNVIDANLCVKGEDLDSQVGVIDFSMYLKSDDDIGGKERNEQIAAILDQKNYVEELNRQLNSTVSSLHARVDSLEKSNTKLIEELAIAKNNIIKLQEENHQLRSENTLILMKTQHHLEVTKVDVEAELQTYKHSRQGLDEMYNEARRQLREESQLRQDMENELVVQVSMKHEIELAMKLLEKDIHEKQDTLIGLRQQLDEVKAINMEMYQKLQVSDDAMKEKNEIIGRLEDKTNQINATMKQLEQRLQQAEKAQLDAENEDKKLKQEYVNKSESLQKEFSQKEKQLLQLETDLKIEKEWRQTLQDDLQKEKETVSHLRIETQEIINLKKEFIKLQEKNRQLKRICQDQEAALQELASKLSESKLKIEDIKEANKALQGQVWLKDKEATHCKLCEKEFSLSKRKHHCRNCGEIFCNACSDNELPLPSSPKPVRVCDSCHAILIQRCSSNVP", "length": 606 }, "evidence": [ { "id": "A0A4X1TNR4", "url": "https://omabrowser.org/oma/group/A0A4X1TNR4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABI0NMX8-1", "protein_name": "RUN and FYVE domain-containing protein 2", "gene_name": "RUFY2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRDQSPPSGSTTRGLPHAPSSGPAGRGEAQRGRISPRPAAGSRVPRPTRAPQNHLGVLPPPGALWAAAGLVADAVAAAARPKGAAGGAQGVPARDCIDTAAMATKDPTAVERANLLNMAKLSIKGLIESALSFGRTLDSDYPPLQQFFVVMEHCLKHGLKVRKSFLSHNKTIWGPLELVEKLYPEAEEIGASVRDLPGLKTPLGRARAWLRLALMQKKMADYLRCLIIQRDLLSEFYEYHALMMEEEGAVIVGLLVGLNVIDANLCVKGEDLDSQVGVIDFSMYLKNEEDIGNKERNVQIAAILDQKNYVEELNRQLNSTVSSLHSRVDSLEKSNTKLIEELAIAKNNIIKLQEENHQLRSENKLILMKTQQHLEVTKVDVETELQTYKHSRQGLDEMYNEARRQLRDESQLRQDVENELAVQVSMKHEIELAMKLLEKDIHEKQDTLIGLRQQLEEVKAINIETYQKLQGSEDGLKEKNEIIARLEEKTSKITAAMKQLEQRLQQAEKAQMEIEDEDKKYLQEYQSKFDSLQKQISQKEKQLAQLETDLKIEKEWRQTLREDLQKEKDTVSHLRNETQQIITLKKEFLNLQDENQRLKKIYHKQEQALQELGNKLSESKLKIEYMKEANKALQGLVWLKDKEATHCKLCEKEFSLSKRKHHCRNCGEIFCNACSDNELPLPSSPKPVRPPIPEPPIPEPPPGVEFKKSSMYRCSFE", "length": 717 }, "evidence": [ { "id": "A0A4X1TNR4", "url": "https://omabrowser.org/oma/group/A0A4X1TNR4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8R4C2-1", "protein_name": "RUN and FYVE domain-containing protein 2", "gene_name": "Rufy2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATKDPTAVERANLLNMAKLSIKGLIESALSFGRTLDSDYPPLQQFFVVMEHCLKHGLKGRKSFLSYNKTIWGPLELVEKLYPEAEEIGASVRDLPGLKTPLGRARAWLRLALMQKKMADYLRCLIIQRELLSEFYEYHALMMEEEGAVIVGLLVGLNVIDANLCVKGEDLDSQVGVIDFSMYLKNEEEIGNKERNVQIAAILDQKNYVEELNRQLNSTVSSLHSRVDSLEKSNTKLIEELAIAKNNIIKLQEENHQLRSENELILMRTRQHLEVTKVDVETELQTYKHSRQGLDEMYNDARRQLRDESQLRQDVENELSVQVGMKHEMELAMKLLEKDIHEKQDTLIGLRQQLEEVKAINIEMYQRLQGSEDGLKEKNEIIARLEEKTNKITTAMRQLEQRLQQAEKAQKEAEAEDEKYAQECLSQSDSLQRQISQKEQQLVQLETDLKIEKEWRQTLQEDLQKEKDVLSHLRHETQKVISLKKEFLNLQDENQQLKRIYQEQEQALQELGSKLCESKLKIDDIKEANKALQGLVWLKDKDATHCKLCEKEFSLSKRKHHCRNCGEIFCNACSDNELPLPSSPKPVRVCDSCHAMLIQRCSSNMP", "length": 606 }, "evidence": [ { "id": "A0A4X1TNR4", "url": "https://omabrowser.org/oma/group/A0A4X1TNR4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WXA3-2", "protein_name": "RUN and FYVE domain-containing protein 2", "gene_name": "RUFY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATKDPTAVERANLLNMAKLSIKGLIESALSFGRTLDSDYPPLQQFFVVMEHCLKHGLKVRKSFLSYNKTIWGPLELVEKLYPEAEEIGASVRDLPGLKTPLGRARAWLRLALMQKKMADYLRCLIIQRDLLSEFYEYHALMMEEEGAVIVGLLVGLNVIDANLCVKGEDLDSQVGVIDFSMYLKNEEDIGNKERNVQIAAILDQKNYVEELNRQLNSTVSSLHSRVDSLEKSNTKLIEELAIAKNNIIKLQEENHQLRSENKLILMKTQQHLEVTKVDVETELQTYKHSRQGLDEMYNEARRQLRDESQLRQDVENELAVQVSMKHEIELAMKLLEKDIHEKQDTLIGLRQQLEEVKAINIEMYQKLQGSEDGLKEKNEIIARLEEKTNKITAAMRQLEQRLQQAEKAQMEAEDEDEKYLQECLSKSDSLQKQISQKEKQLVQLETDLKIEKEWRQTLQEDLQKEKDALSHLRNETQQIISLKKEFLNLQDENQQLKKIYHEQEQALQELGNKLSESKLKIEDIKEANKALQGLVWLKDKEATHCKLCEKEFSLSKRKHHCRNCGEIFCNACSDNELPLPSSPKPVRVCDSCHALLIQRCSSNLP", "length": 606 }, "evidence": [ { "id": "A0A4X1TNR4", "url": "https://omabrowser.org/oma/group/A0A4X1TNR4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TNR4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNR4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TNR4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNR4" } ], "pmid": "" }, { "name": "SH3 domain binding", "id": "GO:0017124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017124", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TNR4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNR4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 463, "end_pos": 465, "annotation": "n_glycosylation_sequon" }, { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1TNR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNR4" }, { "id": "PS50178", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50178" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FYVE-type", "eco_id": "ECO_0000259", "start_pos": 528, "end_pos": 586, "start_aa": "Asp", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1TNR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TNR4" }, { "id": "PS50826", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50826" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RUN", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 175, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 205, "end_pos": 207 }, { "start_pos": 463, "end_pos": 465 }, { "start_pos": 73, "end_pos": 75 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TPL4-1", "uniprot_ac": "A0A4X1TPL4", "uniprot_id": "A0A4X1TPL4_PIG", "mass": { "chemical_mass": 19646.0, "monoisotopic_mass": 19646.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Coiled-coil domain containing 7", "type": "recommended", "evidence": [ { "id": "A0A4X1TPL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPL4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TPL4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPL4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPL4", "locus": {} } ], "crossref": [ { "id": "A0A4X1TPL4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TPL4", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR029272", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029272", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22035", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22035", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22035:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22035:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15368", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15368", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1TPL4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TPL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPL4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKPVKHLLASNGKSANVPDLTYKKGLLNLPLSPKSKEKHSAKTVHDRLEPMVLRSPPTGESIVRYALPIPSSKTKEFIAEDELVRKITKHLKMIVSSLEETYGFNIQNEEKPVMKPEHEGLSLSVGDELNGFLVYCSQSAAQLEEAAKEEYNILESLFKWFQRQVNQMEESYE", "length": 173, "header": "tr|A0A4X1TPL4-1|A0A4X1TPL4_PIG Isoform 1 of Coiled-coil domain containing 7 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1TPL4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TPL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPL4/entry#A0A4X1TPL4-1", "sequence": { "sequence": "MKPVKHLLASNGKSANVPDLTYKKGLLNLPLSPKSKEKHSAKTVHDRLEPMVLRSPPTGESIVRYALPIPSSKTKEFIAEDELVRKITKHLKMIVSSLEETYGFNIQNEEKPVMKPEHEGLSLSVGDELNGFLVYCSQSAAQLEEAAKEEYNILESLFKWFQRQVNQMEESYE", "length": 173, "header": "tr|A0A4X1TPL4-1|A0A4X1TPL4_PIG Isoform 1 of Coiled-coil domain containing 7 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1TPL4-1" }, "locus": { "chromosome": "10", "start_pos": 55820503, "end_pos": 55711397, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044626.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044626.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040118.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040118.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TPL4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TPL4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], 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UBAP1-MVB12-associated (UMA) domain containing 1 OS=Sus scrofa OX=9823 GN=UMAD1 PE=4 SV=1 CANONICAL=A0A4X1TR20-1" }, "locus": { "chromosome": "9", "start_pos": 78216733, "end_pos": 77937004, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084367.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084367.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061321.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061321.1" } ] } }, { "isoform_ac": "A0A5G2R3E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TR20/entry#A0A5G2R3E8-1", "sequence": { "sequence": "MFHFFRKPPESKKPSVPEMEADGFVLLGDTAHEQRVAERSKALDVEGNQHLEIQPTWDYVVLYLLLNKTPVLVDLCSSNPCCSKVNCMYNGILLSCEKEGNPAIGNNMDETCGHDTTPAKKTHPV", "length": 125, "header": "tr|A0A5G2R3E8-1|A0A4X1TR20_PIG Computationally mapped isoform of UBAP1-MVB12-associated (UMA) domain containing 1 OS=Sus scrofa OX=9823 GN=UMAD1 PE=4 SV=1 CANONICAL=A0A4X1TR20-1" }, "locus": { "chromosome": "9", "start_pos": 78134382, "end_pos": 77937004, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073829.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073829.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065069.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065069.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCN1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCN1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102165755", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102165755", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M2BHC2-1", "protein_name": "UBAP1-MVB12-associated (UMA)-domain containing protein 1", "gene_name": "umad1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFKFFGFKNDAAKKSSERESDGFVIIGETVEEQRQKIQSMNIEQPATNVIVQPSKPSSDRNRGITETPQPSSQPTSAKMSSETHTLDATPALPELLGDIPFTLAPHILAMQAGLPFVTDITLPHDINDKLANFRYDFTLENSVLCEP", "length": 147 }, "evidence": [ { "id": "A0A4X1TR20", "url": "https://omabrowser.org/oma/group/A0A4X1TR20/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AAA9TQ42-1", "protein_name": "UBAP1-MVB12-associated (UMA) domain containing 1", "gene_name": "UMAD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFHFFRKPLESKKPSVPETEADGFVLLGDTAHEQRVAARGKTSDVEDNQPLETGKENSSSVTVAGPETETKAGQTLENSSLMAELLSDVPFTLAPHVLAVQGTISDLPDHLLSYDVSENLSRFWYDFTLENSVLYGS", "length": 137 }, "evidence": [ { "id": "A0A4X1TR20", "url": "https://omabrowser.org/oma/group/A0A4X1TR20/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "C9J7I0-1", "protein_name": "UBAP1-MVB12-associated (UMA)-domain containing protein 1", "gene_name": "UMAD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFHFFRKPPESKKPSVPETEADGFVLLGDTTDEQRMTARGKTSDIEANQPLETNKENSSSVTVSDPEMENKAGQTLENSSLMAELLSDVPFTLAPHVLAVQGTITDLPDHLLSYDGSENLSRFWYDFTLENSVLCDS", "length": 137 }, "evidence": [ { "id": "A0A4X1TR20", "url": "https://omabrowser.org/oma/group/A0A4X1TR20/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E0CXP6-1", "protein_name": "UMAP1-MVP12 associated (UMA) domain containing 1", "gene_name": "Umad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL", "length": 133 }, "evidence": [ { "id": "A0A4X1TR20", "url": "https://omabrowser.org/oma/group/A0A4X1TR20/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1ND01-1", "protein_name": "UBAP1-MVB12-associated (UMA) domain containing 1", "gene_name": "UMAD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MFSFFRKGQDSKKITVQEREADGFVIVGDTADDQNRETKDKTSFPETRPIYNQPPQINTGHRSELTLSRAEVGNERSPNLESSPFMSDLLSDVPFALAPHVLAVQGTHNDVPDRLLTYNINDNLSRFWYDFTLENSVLCEP", "length": 141 }, "evidence": [ { "id": "A0A4X1TR20", "url": 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"table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TRA8-1", "uniprot_ac": "A0A4X1TRA8", "uniprot_id": "A0A4X1TRA8_PIG", "mass": { "chemical_mass": 16401.0, "monoisotopic_mass": 16401.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Small ribosomal subunit protein eS19", "type": "recommended", "evidence": [ { "id": "A0A4X1TRA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRA8/entry#names_and_taxonomy" } ] }, { "name": "40S ribosomal protein S19", "type": "synonym", "evidence": [ { "id": "A0A4X1TRA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRA8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRA8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRA8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRA8", "locus": {} } ], "crossref": [ { "id": "A0A4X1TRA8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TRA8", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR001266", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001266", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11710", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11710", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11710:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11710:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01090", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01090", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1TRA8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TRA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRA8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGVTVKDVNQQEVVRALAAFLRKSGKLKVPEWVDTVKLVKHKELAPYDENWFYTRAASTPRHLYLWGIAGVGSMTKTYRGHQRDRVMPSHFSRGSKSVAHRLLQAREGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH", "length": 145, "header": "tr|A0A4X1TRA8-1|A0A4X1TRA8_PIG Isoform 1 of Small ribosomal subunit protein eS19 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A4X1TRA8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TRA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRA8/entry#A0A4X1TRA8-1", "sequence": { "sequence": "MPGVTVKDVNQQEVVRALAAFLRKSGKLKVPEWVDTVKLVKHKELAPYDENWFYTRAASTPRHLYLWGIAGVGSMTKTYRGHQRDRVMPSHFSRGSKSVAHRLLQAREGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH", "length": 145, "header": "tr|A0A4X1TRA8-1|A0A4X1TRA8_PIG Isoform 1 of Small ribosomal subunit protein eS19 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A4X1TRA8-1" }, "locus": { "chromosome": "17", "start_pos": 663948, "end_pos": 663514, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027100.2", "url": "https://www.ensembl.org/id/ENSSSCT00000027100.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026383.2", "url": "https://www.ensembl.org/id/ENSSSCP00000026383.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRA8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRA8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A075B5S0-1", "protein_name": "Immunoglobulin heavy variable 16-1", "gene_name": "Ighv16-1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "EVQLVESGGSLGQPGGSTKLSCEEASGFTFSDHWMDWFRQAPGMRLEWLANTNHDESGKGYAESVKDRFSISRDNSENLLYLQMNSLRNEDTALYYCAR", "length": 99 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B603-1", "protein_name": "T cell receptor alpha variable 6D-6", "gene_name": "Trav6-6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSPGFVAVILLILGRTHGDSVTQTEGPVTVSESESLIINCTYSATSIAYPNLFWYVRYPGEGLQLLLKVITAGQKGSSRGFEATYNKETTSFHLQKASVQESDSAVYYCALG", "length": 114 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B625-1", "protein_name": "T cell receptor alpha variable 4N-3", "gene_name": "Trav4n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERNLGAVLGILWVQICWVSGDKVKQSPSALSLQEGTNSALRCNFSIAATTVQWFLQNPRGSLMNLFYLVPGTKENGRLKSAFDSKESYSTLHIRDAQLEDSGTYFCAAE", "length": 110 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B695-1", "protein_name": "T cell receptor alpha variable 9D-3", "gene_name": "Trav9d-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLALLPVLGIHFLLRDAQAQSVTQPDARVTVSEGASLQLRCKYSYFGTPYLFWYVQYPRQGLQLLLKYYPGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDWAVYFCAVS", "length": 113 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6B4-1", "protein_name": "T cell receptor alpha variable 6-4", "gene_name": "Trav6-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTSPVLVTVMLLFMLGMRKTHGDSVTQKQGQVTLSEDDFLFINCTYSTTTYPTLLWYVQYLGQGPQLLLKVTTANNKGISRGFEATYDKGTTSFHLQKASVQESDSAVYFCALV", "length": 115 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6D8-1", "protein_name": "T cell receptor alpha variable 3-3", "gene_name": "Trav3-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "GEQVEQRPPHLSVREGDSAVITCTYTDPNSYYFFWYKQEPGASLQLLMKVFSSTEINEGQGFTVLLNKKDKRLSLNLTAAHPGDSAAYFCAV", "length": 92 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B759-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4E", "gene_name": "PPIAL4E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A075B767-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4H", "gene_name": "PPIAL4H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTDDKSIYGEKFDDENLIRKHTGSGILSMVNAGPNTNGSQLFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WP50-1", "protein_name": "Secretoglobin, family 1B, member 15", "gene_name": "Scgb1b17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMLAGAVVIFGVALLLLSSWGDCGICPAMKEDVHLFLNGTSEEYVEYVKQYKDDPEILENTEKIKQCVDSTLMEEDKAHANGFIEKIEASPLC", "length": 93 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPA9-1", "protein_name": "Secretoglobin, family 2B, member 18", "gene_name": "Scgb2b18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQSCYSEERIRNILLEPKIMEAMVASPECRSYHSFNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPG5-1", "protein_name": "Predicted gene 13283", "gene_name": "Gm13283", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLADLRSVPGHQCLRDRTDFPCPWKEGTNITQMTLGETTSCYSQSLRQVLHRFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPY7-1", "protein_name": "RNA binding motif protein Y-linked family member 4", "gene_name": "Rbmyf4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKR", "length": 166 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQA9-1", "protein_name": "Secretoglobin, family 2B, member 21", "gene_name": "Scgb2b21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACVPFFEGYASVVSGSRVWMYQEFQAFDATAEEKVALEKIQGCYREESLRNILLEPKIMEAMVASPECLSYYSSNNIRCILDLLSKLLGQ", "length": 112 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQJ0-1", "protein_name": "Secretoglobin, family 1B, member 11", "gene_name": "Scgb1b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLVAAVVILGAALLLLTSGGDCGICPAIKEDVRLFLNGTSEEYVEYVKQYKDDPVILENTAKINQCVDSTLTEKDMTHTTTFLKKIEDSLLC", "length": 93 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQP8-1", "protein_name": "Predicted gene, 21698", "gene_name": "Gm21698", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHGQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR36-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r90", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNEAMKTTEEVALQIVLLCQFGIGTMANILLFIHNFSPLLTGCQLRPKQVICTNMAVSSILILFMTVFPNNVFVVQRNLMNDLQCKLEYFLRMVARSINLCSTCVLSTYQFVTLLPGNFGEMMVRGRRSKVISYSCCSCWLFGVLYNVYIPMKVSGPQNTHNKTDIKSKWFCVTSGFSVGIMFLWFAHDAIFISIMIWTSVSMVLLLYRHYQRLQYIFPPHQGTRGYAEIRAAHSIAMLVVTFVSFYLLHCICFILHIVFVDSRLWLRHVGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYRKPVI", "length": 309 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR44-1", "protein_name": "BTB domain containing 35, family member 15", "gene_name": "Btbd35f15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR49-1", "protein_name": "Secretoglobin, family 2B, member 11", "gene_name": "Scgb2b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQGCYSEERIRNILLEPKIMEAMVASPECRSYHSLNNFRSILEFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSM5-1", "protein_name": "Predicted gene 29049", "gene_name": "Gm29049", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSLKKKSRRKPSSQALGNIVGCRISYGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELHSDERILNLKVLPHKVVFLQVRDVHLASALVCREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKDPVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANSTVYCIKFLGDLHIYVYTLVSNIT", "length": 227 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSN2-1", "protein_name": "BTB domain containing 35, family member 16", "gene_name": "Btbd35f16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLLFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLNFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WUL8-1", "protein_name": "NBPF family member NBPF19", "gene_name": "NBPF19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLFHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEEHISFALYLDNRFFTLTVTSLHLVFQMLVIFPQ", "length": 3843 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WXS9-1", "protein_name": "TBC1 domain family member 3I", "gene_name": "TBC1D3I", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087X179-1", "protein_name": "TBC1 domain family member 3E", "gene_name": "TBC1D3E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDQAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0A0MQP3-1", "protein_name": "BTB domain containing 35, family member 12", "gene_name": "Btbd35f12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDSDLSITPLEVPQGLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YW58-1", "protein_name": "Immunoglobulin heavy variable V8-2", "gene_name": "Ighv8-2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRLTFSFLLLLPVPAYVLSQVTLKVSGPGILQPSQTLSLACTFSGISLSTSGMGLSWLRKPSGKALEWLASIWNNDNYYNPSLKSRLTISKETSNYQVFLKLTSVDTADSATYYGAWR", "length": 119 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXW2-1", "protein_name": "Predicted gene, 20773", "gene_name": "Gm20773", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKIFKVEKS", "length": 232 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXX7-1", "protein_name": "Predicted gene, 20807", "gene_name": "Gm20807", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHTFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKVLEVEKS", "length": 232 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0B4J1J8-1", "protein_name": "T cell receptor gamma, variable 4", "gene_name": "Trgv4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNPGSQALLPLYLPWEANLADENPLLKVVIFLCLLTFGHGKLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG", "length": 138 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JE01-1", "protein_name": "Predicted gene, 21663", "gene_name": "Gm21663", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADPPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JGR8-1", "protein_name": "Predicted gene, 21680", "gene_name": "Gm21680", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWRMWMAHRQTTSPVPVTSKKQFEKEEKELIKKIQLTTKEINELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELVLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JMD5-1", "protein_name": "PRAME family member 33", "gene_name": "PRAMEF33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLMKTPHLETLQAVLRGLDTLVAQKVRPRRWKLQVLDLQDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPRMGEHQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQELEVWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNIKEHLEHLLRYLKNPLGAFIFSDAYLADRDMECLSQYPSLSQLKELRLIHILMWTTNLQPLGALLEKVAATLKTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLDYKGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPTCGSWPSEKVDFHLCS", "length": 474 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JNH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC124905359", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFFSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHCSTVMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDNFFCDVRQVIKLACTDMFVVELLMVFNSGLMTLLCFLGLLASYAVILCHVRRAASEGKNKAMSMCTTRVIIILLMFGPAIFIYMCPFRALPADKMVSLFHTVIFPLMNPMIYTLRNQEVKTSMKRLLSRHVVCQVDFIIRN", "length": 316 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JTV6-1", "protein_name": "RIKEN cDNA 4931429L15 gene like", "gene_name": "4931429L15Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQFNPFSQDTWRHGHRRAYSNISERLSCLTLQEPSVSHLYQIFSPGDRRSYLLDDSLSNSIQRESLAVPMGLEDSGSRGQQKQQQPGAVLEDLEEQEIAPTDVKYRLQLLDEAPLRSKSSSVQSQGHKPGWIPSSKTHREWFKPWKMDMTYPENERSHSGHTQGRRMTPRAQWRHVEYDSQDQDTQSPVWSQALFPGLDKSSQGVIQCTQHVSREREMVSGWSMTHAPQEMGQAKQGPAFLKTKGTAKFNVATTARMSCLPPLKLLEKKVKSRCPPNTPGIFQDWRAQPQGLYGSDERLLAPFEDQVNTRVTYMPLFTEKVKFVSPKTAVSNPKQTHSQLSRTNQPAFPGQFRNWTSGREHLEKGLPE", "length": 368 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JVP7-1", "protein_name": "40S ribosomal protein S26", "gene_name": "Rps26-ps4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKKRRNNGRTKKGRGHVQPIGCANCSWCVPKDKAIKKFVIWNIVETAAVRDISEARIFDAYVLPKLYVKLHYCVSLAIHSKVIRNQSHEARKDRTSPPRFRPAGAAPRPPPKPM", "length": 115 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW93-1", "protein_name": "High mobility group protein B4", "gene_name": "Hmgb4l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRDKDRYQREMRNYSGPRRERRRRDPDAPRKPPSSFLLFSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYHQCQRGE", "length": 168 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW96-1", "protein_name": "Zinc finger protein 94 like 1", "gene_name": "Zfp94l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRGSCDVMLESLRNVASLGHRIGTPDGLLRLKREDMFWLLTVARWSSGSMGDKNLEDMEFLEEVGLRHLPHEELFCSQIWQRITRELTKVRDCRVRVGENGSPMKRDNREDEYSKHSSQNSVFQVHHRECHEEEANERDFGCSHHLRTSTGEKSYKCEKCHNASHWFSSLQSHQGVCDRPRWNKSVSQFKIFRQWPLFHYQQSMPNGENAQEYEACGNAGKNSSGQTALFVHTAEEPYSCEECGARFSQSSYLQVHQRVHTGEKPYKCEECGKGFGWLSQLHAHHQSHTGEKPYTCDACGKGFSYSSHLNIHCRIHTGEKPYQCEECGKGFSQASNLLAHQRGHTGEKPYQCDACGKGFSRISDFNIHIRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCNTCGKSFRRSSDLNVHCRIHTGEKPYRCEKCDKVFSQFSSLQVHQRVHTGEKPYQCSECGKGFSVGSQLQAHQRCHTGERPYQCEECGKGFCRASNFLAHHGVHTGEKPYRCDMCGKHFRQRSYLQAHHRVHTGEKQFRCEECGKGFSWSSYLQAHQRVHMGEKPYKCEECGKGFSWSSSLLTHQRVHAEDEGQKDLSSSGGSYRK", "length": 616 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JYP5-1", "protein_name": "Olfactory receptor", "gene_name": "Or8g52b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEGNHSRVTEFILTGLTDKPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSHLQTPMYFFLSGLSFIDLGYSTVIIPKMLVNFVTEKNVISYPGCMTQLYCFIAFVLCECYMLSAMAFDRYVAICNPLRYNVTMSYQVCFWMIGGVYSIGFIEATIHTVCMLQVFFCKANVVNHFFCDLLPLFQLACSSTFVNETVLLCLSTLNFCVPTLTILSSYSFIIARIIRIKSTESRFKAFSTCSSHFSSVAVFFGSLGFVYFQPSSVSSKDQGKVSSVFYTIIVPMLNPLIYSLRNKDVKLALNKLFQKKIFHM", "length": 312 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K381-1", "protein_name": "Killer cell lectin-like receptor, subfamily A, member 4", "gene_name": "Klra4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQEVTYSTLRFHNSSGLQNQVKTNETQGPRETGHRGCSVSWHLIMIPLGILCSILLVTVAVLVTHIFQYSQEKHELQEALNKLHHNYSTMQNESYLNEEMLGNKSSECDAYKSVLDSLNRQQNTCLRLTNIVLDCLQHKGRQVNVHLFCCGIKCYYFIMDKKQWKECEQACQGCKLSLLTIDDEDELKFLQLQVTPDSYWIGLSYDNKKHDSAWIDNNPSKL", "length": 224 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K3S0-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c109", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNQSFVNEFILLGLSQNPQIKKISFVIFLLVYIATLVGNMMIVVTIAYSPALLGSPMYFFLAVLSFLDACVSSVVTPKMIVDMVYERKSISFECCMTQVFAVHFLTAVEVIVLAAMAYDRYVAICKPLHYSSIMNRRLCGTLVGVAWAGGFLHSIIQIAFTLPLPFCGPNVIDHFICDLFPLLKLACTDTHIFIILVFANSGSICIIIFSFLLISYGVILFALRAHSSEGRRKALSTCGSHITVVVFFFVPCILIYARPTSAFSFEKNVFVFTDVLTPLLNPMVYTFRNKEMINAIRKMWKRLIVVSDKY", "length": 311 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K622-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH", "length": 169 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K698-1", "protein_name": "Lamin tail domain containing 1", "gene_name": "Lmntd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHLASSHRVQKSSLARPERRAKSPSYTDISFWVPVMHRVGSQYQFESVCEQSSGYPGMPAQQVTPVPSQRGGILRKEEKTGTITPSKQHSSVHFFPKVMDSSSTLHLLSGSFSHEASANFHQIPSAQDSLSPGGLLTSKSNVPSCSRKDSIPGKQSTHQAASPGTSLMTLKKQPKPSSDLDTYVLGDGEDYFLSLFGDSKKLTSHTSQAEDVSKHLSVILEEVGQFVSSSLGDIKIAEVNVKGFFVRLVNSSNEKEVEIGNYILQQNVNGQAVSLYRFPHNITMQASGTVTVWAAASEAKPQQPTDFVWEEQSRFRSSPDCTTILCKPSGEAIAWYTPIHWKQAWEKLETDIEFERCSVVIPSLKSHIFGRTTSSVSSINKEKQEPTQKTPPQVCSVLLREKEILLTVLPNKSPWCRSPDTPPHPYSSLIEWHDSDFPGSSLGTQPKPQSTKPKPDPGTKEKKSTR", "length": 467 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6E6-1", "protein_name": "Rho GTPase-activating protein 20-like", "gene_name": "LOC120093152", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDEELVRANKTCTCKTIFFYWATGNALATFRSEEQKVQWYTFLTSRSISEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHKIEDYQLWFSPGHKEAPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERRRKSCMTSCFHGGCVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTKSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAVASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQAEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKMFYGRDLSKKLSIIQFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKANTKELEMSSAVPHEGGPTAGHNGTTSKYNVPQEIILHD", "length": 835 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6V9-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVVFFLGQGSYGRVRLAWHRRTQALVAIKTVEISKDTIRGILSEMTTLESLNHPNIISLYEVLITGTGVHFILQYAPGGNLGKLISEEGPLPEEKAKKMFGQVVSAIRYCHSLDIVHRDIKPQNILIDGEGNIKLIDFGQAIKCKPGTLLSRHCGTRDFNAPELVLREPYDGKSSDVWSLGVVLYFFTTGYLPFRGKTINDVEERITTGTYTIPTHLSGQLENLIHQILRVSPDMRPSVEEIENHPWIKKCEFKILPKTDPDYKIIEMLCAMGYKAKDILESLQKKRYDEPMGAYLSLKDHVSKGFDVGYITPAKPGDPCPPPPPSPAHPSVFGLPLRRRASEPIFGLHHRPPSREQNPLDLILSGLKMSRCVSMPPIAVYYPKKERSTSTRALHSTPVACPCVSNNMSEVEIILPPKQDIEMNTSSPPQRMGWFKRLRKGIRDCFSRLCCLPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K894-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHLLNVTEFIFLGLSPNKEGQRVCFVLFLLLYMAIVLGNLLMVVTVAASRNLGSPMYFFLSFLSFVEICYSSTTAPKLIFDLLAEKKSISVWGCMTQLFFMHFFGGTEIFLLTMMAYDRYVAICKPLHYTSIMNQQVCAVLVGSAWIGGFVHSFSQILLILPLSFCGPNVIDHYFCDLLPVLKLACSDTFLIGLLIVVNGGTLSVISFVVLLASYLVILFHLRTQSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRPSDTLPVDKMIAVFYTVITPLLNPLIYSLRNAEVKKAMKNLWFRIMKADEK", "length": 309 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KB39-1", "protein_name": "Myb/SANT DNA binding domain containing 5 like 1", "gene_name": "Msantd5l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQREANQGESLENTEESNVGKSVKEEEQRPSGRSRSSWTDSEIRVFLQEWEVVEQEMGQPGRKLHKKTKSLCQRLYQQGLKKSWKSCFHLLLSLQDLHRTLCNERPGIEPLFSPYSEALYRILGSTPHESWFPGPLYDEADDSMLPVYPQPPMYQPSDYGITVPSAQLQGNPVPMMCQEDSPFPTWEPWNPSYPLSVPHLLPGFAPGDPSLQQPWSMCDLHQDPQ", "length": 225 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KBC9-1", "protein_name": "Leukocyte immunoglobulin-like receptor subfamily B member 3-like", "gene_name": "Lilrb3l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTFTFTALLCLGLTLRLWIPVLTGSLPKPILRVQPDSVVSMGTKVTFVCEETIGVKESHLYRNGNLQRTVLKNHQKPTNKTEFSFSNVDQQMQQYQCSYRTQTKSSDYSEPLELVVTGAYSKPSLSAQTNPVVTSGGYVTLKCEPSQDNHTLILTVEGSQKHSWRKDPECNRYTEKCHALFYVGPLTSNQRWIFRCYSYEKHTPQVWSAPSEPVELLVSGKLQKTTIKAEPGSVIRSGRAMTIWCQGDLDAEIYFLHKEGSHNTQSTQTLQQPGNKAKFLIPSVTQRHAGQYRCYCYSSAGWSEPSDTLELVVTGIYYYGVKLSGLPSPVVPEGGNVTLHCTSHSNYDKFILTKEDQKFTSSLDAEYIPSTGQHQALFVMGPMTPNYSGTFRCYGYYKHTPQLWSVPSELLKIFISGPSRKPSLLSHQGHILEPGMSLTLQCYSDTKYDKFALYKEGGTDIIESFSQWTKAGLSMTNFTLSVMPNSTVHSGENVTLMCWSTYSVDTFILSKEGSGQPPLRLKSKIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLKALIGVSVAFLLFLFILIFILLRRRHQEKFRKDDEDAQKGKELQLSTGAAEPVTRDRGHQKRSNPAAATQEESLYASVEDMETKDGVELDTWKPPEGDPQGETYAQVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQEVDSQATESEEPQDVTYAQLCSRTLRQGTAAPPLSQAGEAPEEPSVYAALATARPGAVPKNKKQ", "length": 761 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KIH5-1", "protein_name": "Major histocompatibility complex class I LLA precursor", "gene_name": "mhc1lla", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTGKVLFVLFLLSAPTTVLTDSHSLWLLGTYIKGETQFPKLSFTVMLDDLRVGFYNSETKEFIPRDNTTNEDEAVSDVLTVIQNTLEPFMMSTLTFKNGTESPQLFQITWHCELLDNDKPGQIIFKIAFSGSTTDEVSFYNDNFTCQCQNNMATVPLESFQMHYETVCYPNCIATIRDYLKKRQTQVNGKVQPKVRLIKKVHPKSGGFRLSCLATEFYPHSINLTLLRDGQPVSDHEVTGGNLLPNGDGTYQMRKSLEIRADEREKHKYTCSVSHLSLDKILDIDFEFDPSFLIKIVIPVVVLLSLMLVLTAVLIHKCKNKRAESKETITTASTPEPTEMSETLRK", "length": 346 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLESMMACCMSEEAKESKRINAEIDKQLRRDKRDARRELKLLLLGESGKSTFIKQMRIIHGTGYTDEDKRGYTKLVYQNIFTSMQAMIRATEHLKIPFRFEDNKKNALLVREVDVEKVCSFEQPYVAAINKLWMDPGIQEAYDRRREYQLSDSTKYYLNDLERISSRGYMPTQQDVLRVRVPTTGIIEYPFDLENIIFSYLSDLERISDPSYLPTQQDVLRVRIPTTGIIEYPFDLQSIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILCSHLVDYFPEFDGPQNDAQSAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQHNLKEYNLV", "length": 400 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILG2-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVESPEHSDADFTYDYELIRRGGLIFAAVLFCLGMVIIFSKKLRCGKSSATHEDNGDL", "length": 59 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IU63-1", "protein_name": "Metabotropic glutamate receptor 5", "gene_name": "grm1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMLILRMNFFIVFLLFCTRLHLSTERSAVSRAASRSVARMDGDIIIGALFSVHHQPSAEKVAERKCGEIREQYGIQRVEAMFYTLDRINSDPYLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEREGPKWCVEGNPSAQPPATKKPIAGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARALLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELASQEGLCIAHSDKIYSNAGEKHFDRLLRKLRERLPKARVVVCFCEGMTVRGLLMAMRRLGVAGEFLLIGSDGWADRDEVVEGYEEEAVGGITVKLQTEEVTSFNDYFLKLRLATNNRNPWFAEFWQHRFQCRLAGHPQENTNYRKNCSGYESLEDNYVQDSKMGFVINAIYAMAHGLHDMHEHLCPGHVGLCEEMDPIDGSKLLDFLLKTSFAGVSGEDVWFDENGDSPGRYDIMNLQYVEPGVFDYINVGSWHEGILSIDDYMIQMNRSEMVRSVCSEPCSKGEIKVIRKGEVSCCWICTPCKDNEYVQDEFTCKACELGWWPDEELQVCEPLPLRYLEWSHPESIAAVVFSCLGILVTSFVTLVFILYRDTPVVKSSSRELCYIILAGIFLGYICPFTLIARPSIASCYLQRLLVGLSASMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVVIAFILISMQLTLEVTLIILEPPEPIKSYPSIREVFLICNTSNMGMVAPLGYNGLLILSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITTSFSVSLSVTVALGCMFTPKMYIIIAKPERNVRSAFTTSDVVRMHVGDGKIACRSNSLLNMFKRKKNASGNANSNGKSVSWSEPGSRHPPKGEHMWHRLSVHVKKQEAGSNQTAIIKPLTNTYNNPGMEFSDLSTKTLYNVAEEDEIDPIRYNPSNSPHLMAPVSKPMKEVGANLTFYTPEQHVPQQNSVLPQHAMIEHFQDDVVKYNSNMADLDEIISLPEPTDGIILALQPQVLHPHPILPMNVYQDEPSSPLEEVENEQFGLLHGYMYDNAQIHDEEELVQIKMAMEDSMALMPPSPFRDSLGSGSPVRNSPVSESVLCTPPSVTYASVILRDYKQSSSTL", "length": 1158 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IUN8-1", "protein_name": "Trypsin inhibitor ClTI-1-like precursor", "gene_name": "spink2.9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLAQIVLLLCLSVMATAADKCPSVPNCSRYHPHACTMEYWPVCGSDGNTYGNECELCATIFEEKLNIILISKKGEC", "length": 76 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4J2B9-1", "protein_name": "BTB domain containing 35, family member 23", "gene_name": "Btbd35f23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPVSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFTNILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQKCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICNLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNQEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A140T8Q5-1", "protein_name": "BTB domain containing 35, family member 21", "gene_name": "Btbd35f21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMILYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GQX3-1", "protein_name": "Cortexin domain containing 2", "gene_name": "Ctxnd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCVLMEDSSMSNGIDVDKGFAIAFVVLVFVFLIVMVFRCVKLVKNPYEVSSTTADLPLN", "length": 59 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GRH6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 3", "gene_name": "Zscan4-ps3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVRQFPHGARRASQGTPSHHVDIQSPPTTADVTMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGFPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCKSHQKRFCRDAKLYKCEECSRMFKHARSLSSHQKTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GS00-1", "protein_name": "Predicted gene, 36210", "gene_name": "Gm36210", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHPGSPAAPGVSEPGPRELCAFVSGASAHMLRALQPRRIRPSKRRPNHRRFLHNQICREFAKIEAATQHLALTILSQKAPAQRPPFRRPPPPPPSPFLGVACAEAPMEAPHGSPSLSPVALDTSTLDLFDDILLTPTPRPLVTPDSFCQTLPAGNPQVASDVISHALGPGDQGQPTPIQAPRFSNLLLPPQKAQGGSLEPAALGCGWVDSWEAPYACDPQGVLDSWGAL", "length": 229 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSB3-1", "protein_name": "Family with sequence similarity 236, member D", "gene_name": "Fam236d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATEGVATAHTMLTSRGPRDTREPAPPTRSWRSRFQRALARVSKFFRRGRRTARG", "length": 72 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSI2-1", "protein_name": "Family with sequence similarity 236, member C", "gene_name": "Fam236c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATAHTKENSSRGPRETREPAPCTRSWRSRFQRAVARVSKFFRRRRRST", "length": 66 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYU6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 2", "gene_name": "Zscan4-ps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEGNVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSVPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYV3-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 1", "gene_name": "Zscan4-ps1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWAIQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYTLTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNTSCNATEGNVGERCGGNEMDSLLIIQKEQHPEHEEGNVVCRFPHGARRASQGNSSHHVDFRSALTPADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSSDNIPRKKTDSLSINKRIYHPEPEVGDIPYGVPHDSTRASQGTSTCLQESLGECFSEKDPREVPGLESRQEEPISDPVLLGKNHEANLPCESHHKRFRRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCFTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1D5P3Y4-1", "protein_name": "Large ribosomal subunit protein uL24m", "gene_name": "MRPL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLSALLRLAAPPKLPKGYRHGTWRPGTAAERLRNPPGQRRKKIFVEPISREDWKVFRGDTVQVLTGKDAGKQGMVTQVVRARNWVVVEGLNTHYRYVNRDAKYSSTYIASEAPLLLNQISLVDPEDRKPTEVDWRYTEEGERVRVSLRTGRIIPLPLWQRRDGIVPEQWIDGPKDTSVDDALDKTYTPSLKTFEEEIMDAMGIVETRRAKKSYWY", "length": 216 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PNZ8-1", "protein_name": "ODF3A protein", "gene_name": "LOC124417034", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPATKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5RLF0-1", "protein_name": "F-box and WD-40 domain protein 27", "gene_name": "Fbxw27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METHLPSLPLMKIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLFCDMVTLQLQDKETWKQFFVYRTWQEHSKTRANPRDFTYKEIPLQYGPCGYACYISGCGITRKGQDKSVVCMVNSKNTISTWDVHKSVITWVSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNILESPCKSLKAVITKDDPIVLVSDILGNLYIFRIPDLHLISTVNVLPCDIDEIYCSPQKKWVLLSKKQPYILPKVFYMSSLLRTSEFSAPVSTLLEISLCQEAFWTPRREDRLTLMSRSGCSKITKFETYDMKLEEFGNKIIVKGNSIAGFLLPYYTESLNWFGVSDKDTIVCSTEFSLLLFTNNGHRLQTFQYFSETIVRLSVDPVHVIVTCNDGSLDVYAWEERSLLLRKCYRLKNRRHLSPRGFINKTLCDDVSIIQLMIDGHDTWFLMAYALNICS", "length": 466 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1P8ASP4-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4KB", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVSDKHVESNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRDEEVQYNDDENVNGGDLDMEEGEILGKEGIGETLKKKLESVDEFGDIKSGQFRENNLAFNGDDGFPLICKSWIRVYNYLSYKCHGRNQRRERECEKRKEIEPDRERRKERGSVDRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSEKDRDKGREFQSDREKHKSLDDGYGEVRHKHSGHSRHDAEDDLELRSPTSVNGHDPNSGDVKETRGNVERTRIDNDDKGDVVVWEVEQEDEELNLIEESRRRTQAIMEKYKKKLEQQNGFSSHDLELANIPKQSSTVADVLGSGTLGPVTSAVNQAKAGLDIDAVDGEVAKLSSAVGESPAQLVISDSDRTLASTGLGEGSPKDKISDDMFTDDIFGESPADSQKMVCTLTQIIDLVFIEFSNSGFICFVFPVHHLTRYSRNGLPFVHYIFVGYLRGKGNGIPIVRSGLDDNWDDAEGYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKAELGEPEEVAIKIIRNNETMHKAGQTEIQILKKLAGSDPENKRHCVRFLSTFKYRNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPDNMLVNEGRNTLKLCDFGSAMFAGTNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELFSGKIMFPGSTNNEMLRLHMELKGAFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTRKTTKRMMVNIKPKEFGSVIKQRYKDEDSKLLVHFRDLLDRIFILDPQKRITVSQALAHPFITGK", "length": 834 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BFV1-1", "protein_name": "Bax inhibitor-1 family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGLKDFSRISPAIQSHLMRVYFSLFCILAASAFGAYLHMRLNIGGTITKLGWVLSLLEHVVSCPPYKHKIRFSLLLLFGVLHGASVGPCIKSTIDIDSSILITAFLGTAVIFFCFSAVAMLARRREYIYLGGLLSSGFSLLTWLKNSDQFASATVEIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIMWNTSADRIRRNNEET", "length": 226 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1W2P6Q8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7S8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKMRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLIGGLNTPLHESDFSGVTPQQQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLHINPEDGMADHSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQATRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPFDVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGFATNDSEHITYLEHSPYEKFSKEDLKKAQDALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSCYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLEEDVQRQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7Z8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P855-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAIMKYRKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2PP81-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 5", "gene_name": "TAF11L5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A1Y7VLT7-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1Y7VNG9-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRHRGKNENESEKRELVFKEYGQEYAQVTKMLGCLWLEAMCFDGVKRLCHIRGKLRKKVWISTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINETDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YCH8-1", "protein_name": "Predicted gene, 47985", "gene_name": "Gm47985", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGAPHNSAKRHRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPIVLQRAWLTWQLSHAGAALHWALHTVKSILTSQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YD13-1", "protein_name": "Predicted gene 8947", "gene_name": "Gm8947", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKREQLLDKKAEDKQPPESRCNNGRSSKSSPMGKENTWPSREAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDQRSQPRSPVRTLKRSRSGDRQGAPHNYAKRRRQTFPPEASCSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYIWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 301 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YE43-1", "protein_name": "Predicted gene, 47996", "gene_name": "Gm47996", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGVPHNSAKRCRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286ZIN6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258935", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANLTSMSGFLLMGFSDDHKLQILHALLFLVIYLLALTGHLLIITITTLDHHLHSPMYYFLKHLSLLDLCFISVTVPQSIANSLMNNGYISLGQCILQVFFFIALASSEVAILTVMSYDRYVATCQPLQYETIMDPWACRQAVIAVWVTGGLSGLTHTAINLSVPLCGDRVIHQFFCDVPQMLKLACSYEFINEIAVAAFTTSTAFFCLISILLSYTRIFSAVLRIPSAQGRTKVFSTCLPHLLVVTFFLSAAGFEFLRPPSDSQSAMDFMFSIFYTVVPLTLNPVIYSLRNKAMKAALRKVLSKEEFAQRKKYFKALFQL", "length": 321 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZIP8-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259124", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "QEYKANGGDNTTTIIHFVLLGFSDFPHIRPALFVVFLVIYILTLTWNLCLIVLIRLDSHLHTPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECCLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVQVLTAIFTVFFGIINALVIMMSYVYIVISVMKITSAKGRSKAFNTCASHLTAVTLFYTSGIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 316 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZLI4-1", "protein_name": "C-C motif chemokine ligand 24", "gene_name": "CCL24", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFSPSSLIKASGQLQCPAGNRLLAPTLSSCIAALSPELPLLLSRHGRPVTVAASLLFLGLCAYSFAPADSVTMPSSCCIYFISKKIPESRVASYQLSNSSVCPQAGVIFTTRKGQKFCGDPKQLWVQKYMKKLDAKRKKASTRIRAMGTGAPVRRGPANSTSI", "length": 163 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZSE3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258059", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPKLQVLIFIFLFVAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEISFISSCIPRYLYSIATGDKVITYNACVIQVCFTDLCGVTEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSVQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZU87-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100152920", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILETMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDHYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSTVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSWRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZVC9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258401", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZWC4-1", "protein_name": "Zinc finger protein 16", "gene_name": "ZNF16", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLPLSQVPAMPSLRTRPGKAEMEPSVPGPSLRTPGTQVSVSDAPAVTHPGSALHGPLSCGDTEPGATPPHHQLADWDLRTEGSQLLQKEDASEDLESQAGTSEDYVGAGSQAPERGELCADVLGSDWGVPQGERLSLCQEGGFMPAYLLPGSPLEEPEIDTEPLERNFGLIITPVASPGEPEEETPQPFDACDQSVHCGVDLAGHEGLHAAESSFICGECGESVGLHSDLLRHRLSHRGEKPHVCAECGEAFSQSASLESHQRSHEPAKPFQCSTCGKAFGRSSSLIKHHKVHTRERPHACGECGRPFSRFSNLVKHRRVHTGEKPYRCSECGKAFSQSSSLLQHRRVHTGEKPHVCPVCGKAFSYSSVLRKHQIIHTGVKPYSCSACGKAFSHSSALIQHQGVHSGDKPYECRECGKTFGRSSNLILHQRVHTGEKPYECAECGKTFSQSSTLIQHQRIHNGLKPHECDQCGKAFNRSSNLIHHQKVHTGEKPYTCVECGKGFSQSSHLIQHQIIHTGERPYKCGECGKAFSQRSVLTQHQRVHTGEKPYDCEACGKAFSQRSKLVKHQLIHARE", "length": 576 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZX75-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100156955", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "IFIMEWENQTASSDFILMGIFSHTPTHIFLFSLVLGIFTVALLANTVMVLLICLDRRLHTPMYFLLSQLSLMDLMLICTTVPKMARNYLSGRKSISVAGCETQIFFSVSLFGAECFLLAVMAYDRYAAICYPLQYPQLMNWNVCGLLAASSWILGVFDGIVDIAATLSFSYCGSREIPQFFCDITALLRLSCTDTSTFETLVFICCVVMLLFPLSLIIISYTRVIITVIRMSSGEGRHKAFTTCSSHLVVVGMYYGAAMFIYMRPTSNRSPAQDKMVSAFYTILTPMLNPLIYSLRNKDVAKAFSRCWGREI", "length": 312 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZY56-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258501", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METDNDTQILEFLLLGFSKQPESQPIIFGLFCSMYLITVFGNLLIILAVISDYHLHIPMYFFLSKLSFVDICFTSTTIPKMLWNIQTQSKAITYEGCITQIYFLILFAVLDILLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLVPWIMSVLNSLLQTLMMMQLSFCTNFEIPHFFCELNQMIQLACSDTFLNTIVMYFAAALLCGGPFFGILCSYSKIVSSIYRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAAAHSSHSSATASVMYTVITPMLNPFIYSLRNKDMKRALKALFVKGPM", "length": 310 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZZP6-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHLPNYH", "length": 402 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7E2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258743", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFPDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKVACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7J9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258750", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVKEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLAFVDLCYATAITPKVLQNLMSTEKSISFIGCMVQLFVYGTFVTSDGYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSCFMGFLNACVNGSLTFQLNFCKSNKINHFFCDAPPILALSCSSIYFNIMLLAAFVGFNLMFTVSIIIFSYIFILAAILKISSAAGRKKAFSTCGSHLTAVTIFHGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMLNPLIYSLRNQDVREALKEIGKKML", "length": 309 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A951-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "LOC100514137", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVHMNVLTDALESINNSEKRGKRQVLTRLCFKVIVRFLTVMMKHGTPIGKFEIMDDPRARKIVVNLTGRLNKCGVISPRFDGQLKDLEKWQNKLLPSCQFGFIVLTTSAGIMHHEEAR", "length": 118 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ACV2-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDAPTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLIKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEDSAWNKLQFYHNPNFKRGCPNLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSTSTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHRISNFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSVASLSRPNPQSSSISEHHPNYY", "length": 402 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AEV7-1", "protein_name": "Uncharacterized protein", "gene_name": "WFDC10AL", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKWWGLQWLMLSCLAILPASGNWQERISASLEALTQSKLIPGMKPCKTIPTKEQCTYFCDLPRACPTGLLCCSASCGNVCMPPKGHGNRRSSHKISNFLFTAEPIKQQ", "length": 108 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AF12-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTNTKGKRRGTRSMSSSPFRKHGVVPLATYMRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRVYNVTQHAVGTVVNKQVKGTILAKRINVHIVHIKHSKRGDNFLKRVKENDQKKKEAKEKVTWVQLKHQTAPAREAHFVRTNGKEPELLEPNP", "length": 155 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AGK9-1", "protein_name": "DM domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPDEMPTVPCCPLDSTTGLETGAPWGIEFGPRRAIRRCARCHNHGITDQIKDQEHLCLFQACECHKCVLFSEHCSILPAESALKTMQELHLKRQLTQGLIKSGTTSPKAHSHVKKSSIQTGVLSKLPRCSADRSGIGIFVSVLDSSTLEEATNNFTFQEVTQAPCPAQQAPKTSDQDSDSASLEWQRKLEAAEALLTLRESSQAPSGPTPLLQPSAAPAPAGERGLQPPSRSLRPRPASSISLPIGHVGCISLLS", "length": 256 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AKK8-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100155397", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDVRNHSIVSEFVFLGFTNSWEIQLLLFVFSFLFYSSSMMGNLVIVFTVTLDSHLHSPMYFLLANLPAIDMVFCSITAPKMIGNIFKKHKAISFCGCITQIFFTHAAGGTEMVLLIAMAFDRYVAKCRPHHYLTIINPRICLCFLVTSWIIGLIHSMAQLFFVVDLPFCDLNVLDSFYCDLPRLLRLACTDTQELQFMVTVNSGLLSMGSFVLLIISYIFILFTIWKHASGGSSKALSTLSAHITMVVLYFGPLIFFYTWPSPTSHLDKYLAIFDAFITPFLNPVIYTLRNKEMKVAMRRLFSHLVHYRNIS", "length": 312 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AP00-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258730", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "SRHDLHCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLTGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCDHLAMVSWGVGCMAALGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSMPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTVVTSMLNPIIYSLRNKDVKAALRRTLGKKKVLAHR", "length": 322 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ARD5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258934", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLFYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AT12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLSFNRTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQFFIIHCIFMSESGILLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIFLRSYCTVFPIIFLLKRLTFCRNNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDILLIFVSYMLILRAVFHMPSQDARHKALSTCGSHVCIIILFYGPGILTTLAQRFGRHIPAHIHILLANVCVLAPPMLNPIIYGIKTKQIQEQVAHLFLKQK", "length": 313 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AUC4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MERINKSHPEEFILLGFADRPWLELPLFIILPMYFFLTNLSFLDMCYTTSIVPQMLFHLGGSEKTISYLGCAVQLYFFHTMGGTECLLLALMSFDHYVAICKPLHYTLIMNRCTCILLVATVWLSGMTYAVSEATVTLHLPLCGHNTLDHLICEIPVLIKAPCGEKGTNELTLSVVCIFMLAVPLCFILASYASIGHAVFKIKSSEGRKKAFGTCSSHLIVVFFFYGPDISMYLQPPSSISRDLPKFMALFHGVVTPTLNPFIYTLRNKDVKGAWGNLVRSVFTSK", "length": 286 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AXC2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVNEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEMLQNFVGTEQSISFIGCMVQLLIYGAFVTSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSYLIGFLNASVHVSFILPLNFCKSNKINHFFCDAPPILALSCSSIYFNVMLLAAFVGFNLTCTVLVVIFSYIFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 281 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AY25-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100155405", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLSNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSRRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDRFFCNLPLVIELACMDTYKVEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRLSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNHHVNSWKY", "length": 311 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B1Z6-1", "protein_name": "Short stature homeobox", "gene_name": "SHOX", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEELTAFVSKSFDQKSKESSGGGGGGGGKKDSITYREVLESGLARSRELGGSDSNLQDITEGSGHCPVHLFKDHVDNDKDKLKEFGTGRAAEGIYDCKDKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTASHLDACRVAPYVNMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYLMFPPPPFGLPIASLAESASAAAVVAAAAKSNSKNSSIADLRLKARKHAEALGL", "length": 292 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B9C9-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWRSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTECPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHHPNYH", "length": 402 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BB76-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100157512", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLGNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSHRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDSFFCDLPLVIELACMDTYKIEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRHSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNRHVNSWKY", "length": 311 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BC21-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152520", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYVAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BF45-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100513333", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPELQVLIFIFLFLAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEVSFISSCIPRYLYSIATGDKIITYNACFIQVCFTDLCGITEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSDQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BGE2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENNQSWIAEFILVGFQLSEEMELFFFIIFFLLYIFNLLANGMILGLICLDPRLHSPMYYFLTHLAVTDISYASSNLPNMLENLVKHKKTIPFVSCTLQMLFYLAFASVECLILVVMSYDRYVAICHPLQYTVIMNWKLCTVLAIISWACGFFLALVQVSLFLRLPFCGPQKVNHFFCEIRSVLKVTCGETWINKIFLFADGVFILVTPISLMLVSYVRILWAILKIQSKEGRKKAFSTCSSHLCVVGFYFGIAMMVYLVPDDSHQQEEQQKILFLFYTFFNPLLNPLVYSLRNAQVKAAFHRIFQKNRTM", "length": 311 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BIM6-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGKRSRRKSPGRQGRTCARTTRAGLSASVSHMERLLREGPYAQCLSSSARVFLAATIEYLTARVLELAGDEAQIVGRRCITPELVAMAVHNNALLSAFFGTLAISQVAPTQE", "length": 113 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BK27-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVTEFIFLGLSNSQELQTFLFVFFLVFYVGIVFGNLLIVLTVMIADFFRKCKVISFKGCLAQIFLLHFFGGSELVILIAMAFDRYVAICKPLRYTTIMSSNVCVGIVAAAWGTGFLHSVSQLAFAVNLTFCGPNEVDSFYCDLPRVIKLSCTDTYRLDIMVIANSGVLTVCSFVLLIISYTVILVTIQHLPSQKSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVFYSVVTPLLNPIIYTLRNKDMKTAMKRLRKWNMNSRIKP", "length": 274 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKA6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259008", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTFNCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLMGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCVHLAMVSWGVGCMVGLGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSIPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTMVTSMLNPIIYSLRNKEVKVALRRTVGKKKVLAHR", "length": 320 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKW4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258932", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILVTMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSTIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSLRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BLZ6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258167", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGGKNSTTITKFILLGFSEFPKLTAVLFSVFLRISLMTVSWNMGLIMLIRMDSHLHTPMYFFLSNLSLLDICYVSTIAPRMLSDFFKKYKFISFMGCTMQYFFSSLALTECCLLAAMAYDHYAAICNPLLYTAIMSPTLCVQMVAGSCVTGFFGSFIQLCALFQLHFCGQNVTNHFFCDLPQLLILSCSDTFFFQVMTSVLTVIFGLTSVLVIIISYGYIIATILKITSSEGRSKAFNTRASHLTAVTLFFGSGIFIYMYPNSGDSLSQNKLVSVLYTVIISMLDPLIYSLRNKEIQDSLSRWRKTIFSWCY", "length": 313 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BNL4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "TVLNARNVSTPKVFILLGFSDHPWLEMPLFIIVLAAYIRTLVGNISIIVVSRVDPNLDSPMYFFLSNLSFLDLCFTTTTIPQLLLNLWGPDKSISYGGCVTQFYMFHFWGATECIFLAVMSMDLQAICKPLRYPVIMHQQLCIFLVVMAWLSGLVNSLLQSSLTIQLPLCGNNKVDDFLCEVPVMIKMSCTDTTFNVAMLSIVGTFYSLVPLSLILVSYGFIVATVLRIQSSEGKKKAFNTCSSHTIAVSLFYGPVISMYVQPSAANSQDKNKLMSLFYSLVTPMLNPFIYTLRNKDMKGAMMRLLVSLYHQRRG", "length": 315 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BSD4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100525471", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENENSTVVAEFIFVGLTQSRNIQLLVFVLILIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNLRACYALLVALWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLMTLLCFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPAIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKRLLNQQLA", "length": 307 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A2R8VHJ9-1", "protein_name": "Predicted gene, 36245", "gene_name": "Gm36245", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTKNEEQNEDQSEGVVIPHIQDHHCLAILAFCFFFPLGYLAYRSSCKTRTYIEQKEYEKAKATSRCTFAFVLSSIAGGSIIFFCLFSRLFFM", "length": 93 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A3L7ICH5-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "LOC100756118", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYYKFSGFTHKLAGAWALESYSPQGLKPVASTEAPPIVFATPTKLTSSVTAYVYAGKNKVPELQKFFQNFFHLKRGLPDQMLYRTPMALTVGGTIYCLSALYMASQTPNK", "length": 110 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1LL21-1", "protein_name": "BTB domain-containing protein", "gene_name": "LOC112445444", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPLNSRNLQCRESGTGELQQPEAQAGPSYVSGSRKRKQSTGPSLGPESEMSHNQEEDLQQVVCTRQGKKVKIKSEYAYQTLFLNGETSDIKIRALGKVWCLHKRFLCQSDYFATMFRDSGKECHKDIIDLEINDQNINVESLQFVLGSLYRNEYVLIKPLQVPRVLATACLLQVEDLIQQCDKTMKETINVKTVCSFYVAAETYGLHSVKTGCFEWLLHNLMTHPSVELYKKLSTDLMNLVISSSNLFVMQKEIDIYTTLKQWMFLRLNPGWKGTMKQLLVNANNWFSRHKEHDGSISFLETKQGIVFQPVFKNLRFQHIICDLASTKVIEQDALIPSEWLSCVYKRQWYTLLRAQQYREIGPRDITETELEEYSMRCGKRIVRDGTYAWKWSGYNFGVHLYVVFTSHFIIFKRHAFSQPYDGSICLQPQRNIAFRLTLVYFGSSGKLSFRKTTGYKILTFEKDEEQMVMKLDSVALSFPLYIFCNFLFISLENPGN", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LLV6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIIIGTLITGYMVTCTCFLHYSCDSEEAHKATKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LUU6-1", "protein_name": "Guanylyl cyclase domain containing 1", "gene_name": "GUCD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTGPRCRRKQRPSGRPGPRGTRAPQHPTPDAGWTARRAAGAAGAEARGRDLPPQRKPAKPTAPGKGRPERGECPRRADRGGGDPEERAGGRPAWGPGAGRGGAWGRSRLPPLLPPGRWCWRPGKPARAGRALSSPVDARAAAGAGPGPWEPRAARVMRTEVDAEAAGPPLEPDEPTQSLSIQDQETAFLLEDSCQLKPGQPLPGRPWPSGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDAEFEQALQELRLTRSIWTIDLAYLMRRFGVRHRFCTQTLGVDKGYRSQSFYRKHFDTEETRVNQLFAQAKTCKVLVEKCRVSVQDIQAHLAQGHVAIVLVNSGVLRCDLCSSPPKYCCFTPSGPRCFCRSPDYQGHFIVLRGYSRAAGCVFYNNPAYADRMCSASISNFEEARTSYGTDEDILFVYADS", "length": 434 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1M0W3-1", "protein_name": "IF rod domain-containing protein", "gene_name": "LOC787600", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTCGSACFSSRSGVRSSSSCVTTQRYAPGRTFSCVSACGPRPSRCCITAAPYRGVSCYRGLTGGFSSRSVCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKSLNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEADTGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSLVEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAEAESWYRSKYEEIKATVIRHGETLRRTKEEINELNRLIQRLTAEIENAKSQNSKLEAAVTQAEQQGEAALNDARGKLAGLEKTLQKAKQDMACLLKEYQEVMSAKLGLDIEIATYRRLLEGEEQRLCEGISAVNVRVSSSRGGVVCGDLSATRTCGIGSYGVGACGSSCKKC", "length": 480 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MFB0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112441459", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELWRRLLIIVIGTLITGYMVTCTCLLHYSCDSEEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKSTWPPSLQCRVKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVTLFSRELKHFYKSYKKKQPIYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDMFKNSQNN", "length": 361 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MI36-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSSSGSKAEFIVGGKYKLVRKIRSGSFGDMYLAINITNGEEVAVKLESQKARHPQLLYESKLCKILQGEVGIPHIRWYGQQKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMMGRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASISAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRTLNHQYDYTSDWTMLKQKAAQQAASSSGQGQQAQTPTGF", "length": 325 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MQ28-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "KEQVLQPTTVVSLEGAVAEISCNHSVSDVYDFFWYLHFPGFAPRLLIKGLGPSQQGRYNMTYERFSSSLLILQVQTADAGVYYCALRYTEAGHP", "length": 94 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MT47-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112444909", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLGCEGGKRPLKPPKKQAKETDEEGKAFKHKQKEEQKTLEGLKGQIMGKVPLATGGIKESGKQ", "length": 63 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MUP8-1", "protein_name": "E3 ubiquitin-protein ligase", "gene_name": "LOC100336539", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRLTERALPTGTSNGAPSSRRAPVLTGTTVSNNDLASLFECPVCFEYVLPPITQCKSGHLVCGNCRPKLTRCPTCRVPLTSIRNLAMEKVANLVLFPCKYTSSGCGKTMPPTEKADHEEHCEFRPCRCPCPGTSCGWQGSMDAVVPHLMQHYNESIITLRGEVVVFLAVNINLAGTLEWVMLQSCFGFHFLLVLEKLEIYDGHQKFFAVVQLIGTREQAENFTYQLELNGNRRRLSWEATPLSIHEGIATALINSDCLIFDSEVAELFAENGNLSIDVTISMC", "length": 284 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q2TUK0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC121109925", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDEKGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2UEY0-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418381", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSSYTIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A494C0N9-1", "protein_name": "Protein FAM246B", "gene_name": "FAM246B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPGRPWAQARSAYRASEVLRRVTGRRRDPGPQSNGPGREDARAPGRLARLLRQLRAEAASRSEVPRLLKLVERAGAGAAGAGERTGAHSRGSVCSVCGEPRGRATYPAGVLEVSERRLQEGLAAVREELGAEIEALRAELRAELDALRALLPPPPPSPPARREPRAVPRAAPRGPTLLRTLGTVSALVAASRPADDAPDGPAECGAHRAPARKNHKKMPVPPGAPQGGGD", "length": 232 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A494C0Z2-1", "protein_name": "Speedy protein E13", "gene_name": "SPDYE13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1TY10-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100627324", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENYNQTSIYFILLGLFPSSRIGMFLFIIIVLIFLIALFGNFSMILLIFLDNNLHTPMYFLLSQLSLMDLTYISTIVPKMAYNFLFNDKSISFIGCGIQSFFFLTLAGAEGLLLAAMAYDRFVAICFPLHYHIRVSKRICVLMIIGSWIMGSINSFAHTAYALNIPYCQSRAINHFFCDVPAMLTLACIDTWVYESTVFVSTTIFLLVPFTCIAFSYGRILLVVHHMNSTEGKKKAYSTCSTHLTVITLYSAPFAYTYLRPKFLRTPTEDKVLAMLYTIFTPMLNPIIYSLRNKEVMGALRRVIQRICSVKM", "length": 312 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1U699-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSVSMSKFVLVGLHIWPEQQGMVFALFLGMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLAFSDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFFSCIDNLLLAVMAYDRYVAICHPLRYAIIMKEELCLCLLAGSWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLASLIKLSCSDTSLNELVIFSLGPAVFIFPLSGILVSYGCIVVSILSVHSPKGIFKALSTCGSHLSVVSLFYGTSMAVYLSSSSGQSHDKDTIASIMYTVVTPLLNPFIYSLRNRDMTLALQILFRNSNLLAK", "length": 315 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VK25-1", "protein_name": "Elongin-C", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RSYGGCEGPDASYGKLIASDKFIVKREHVLTSGAIKAMFSSPGQFAEKETDVVNFRETPSGIPSAALWKVCMYLPHKVCYTSNTSEIPEFPINSEFPIAPDIALEPLMAANLLDC", "length": 115 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A571BD55-1", "protein_name": "BTB domain containing 35, family member 26", "gene_name": "Btbd35f26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BF50-1", "protein_name": "WD repeat domain 88", "gene_name": "Wdr88", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTKDNEEILNSPDQVRKGSPDVKKKKKIKKKRVKPKGDLDSKKLDFVEDSWWKGSLKNKNLDFAEYNWVLVDNRRVSVDSRKSSADSKRGSADSKRGSADSKRGSADSKRGSADSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKNRFSPKKMDFSEDREISQPTFLRAQQSKVPWALMRALGLFKLSLPDIRRYYNLTSHDPLALDKDRQPREKSHMATVKKFWGNQQPLSKIPYKILIGHDHIVSSCHFCMNDTRFLSSSYDCSVKLWDAEDGTVIWDFEPRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRHDTFVVCCKFSPNGKFVLSALDVDRGIYLMDPENITTVIHMKDHHQRSITSCCFDPDSQKVASVSMDRCIKIWDITSRTTLFTIPKAHYNAISDCCFTSTGHFLCTSSWDKNIKIWNVHTGEFRNRGACVTLMKGHEGCVSSCCIARDSSFLISGGFDKTVAIWDVGGGYRKLALKGHEDWVTDVAISNNKKWILSASKDSSMRLWNIEEIDKIPLVSENKKAMGLKVRQVGIR", "length": 565 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG45-1", "protein_name": "BTB domain containing 35, family member 25", "gene_name": "Btbd35f25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGLQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG86-1", "protein_name": "BTB domain containing 35, family member 8", "gene_name": "Btbd35f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESRHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A5G2QG78-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100523228", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTRGENTTNITDFVLLGFSDFPQIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHTPMYFFLRNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECGLMTVMAYDRYAAICNPLLYSSTMSPSLCGRMVLGSYMAGLSASLSQVCAMLQLHFCGPNVIHHFFCDMPQLLVLSCSDTFFLQLLTLVLTVIFGILNALVIMMSYVYIVISVMKITSTKGWSKAFNTCASHLTAVTLFYTSIIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDAWKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QIN7-1", "protein_name": "ADAM metallopeptidase domain 7", "gene_name": "ADAM7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSNSHYLSALFSREFLASNYSETYYSTKGEEVTTHPQIMDHCFYQGSIIHEFDSAASISTCSGLRGFFRVNDQRYLIEPVKYSDEGEHLVFRYNPKVQHAANYSCTELNFTRTAVLKDNTKSMEDSKMESIEKEKHIELFIVADNNVYHRNPNSKVRNRVWGMVNFVNMIYKTLDIHVTLVGLETWTNGDKIEIDSNIETTLKRFSAWQEIILKKKKNFDHVVLLSGKWLYTSAQGTSYPGGMCLPYYSSSVVKDLLPDLNTIASRMAHQLGHSLGMKHDDYPCTCTLGKCVMDSGGSIPALKFSKCSRTQYQQYLKDFKPTCMFDIPFSDKLSDYPYCGNKKLDDGEECDCGPVQECTNPCCDARKCMLKPEFTCAEGECCESCQVKKAGSLCRPAKDECDFPETCTGHSPACPKDQFQVNGFPCKDAKGYCFMGNCPTRDDQCSELFDNEAKDSSDICYKMNKNGNKFGYCKNEEQTLIPCEEKDVKCGKIFCTGGKHASILGEEKVYHLKKPLTQNVTECKTFFLYHKSKDFGLVAPGTKCGEGKVCSNSECVTIEKAYNSTDCPSPCNENAVEDGDLGCQCEGVQASVDWEETLNVTNISILVVVLILVIIGVLSAVLLIRYQKCIKLKQVQRPPSEALGVENKGYTGDEQQTRTEPILPDIHPLHRRTAESLARLPTSFSSPHYITLKPASKEPRGTADPNPSAKVSLKLDIQNGCASLS", "length": 725 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QM02-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100623139", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTGGENTTNITAFVLLGFSDFPHIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHIPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYVVFSTMGLSECGLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVRVLTAVFTVIFGIINALVIMMSYVYIVISIMKITSAKGWSKAFNTCASHLTAVTLFYTSGIFVNLNSSSGGSSGLDRFAAVFYTLVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QUE5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524011", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSNVSKFLLLGLPIQQEQQGMFFALFLGVYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFASVTVPKMLMNMQAQDHSISYAGCVTQTYFFMFFACIDNLLLTVMAYDRYVAICHPLRYTIIMREELCICLLAGCWLLSCAYALTHTLLLAQLSFCVDNIIPNFFCDLAALLQLSCSDTSLNELVIYTSGAAVFIFPPSGILVSYGRIGISILRVPSTKGICKALSTCGSHLSVVSLFYGTIMALYFSPSFGQSHYKGIIASVMYTVVTPMLNPFIYSLRNRDMTLALEILIRNKNLFTT", "length": 313 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QWK6-1", "protein_name": "Calmodulin 3", "gene_name": "CALM3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VSAEREEEGVALKFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R7Y6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524140", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLVAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINHLSGTKSISFVGCATQYFLFLSLGGAECLLLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIVLISASYVFILHSVIHMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2RGH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524855", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGRRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYTVLMNRKVGQMMAVTSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYETAVYISDIVLLLLPIILISASYIFILHSVIRMHSAGSKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALRRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A668KLA6-1", "protein_name": "Predicted gene, 52955", "gene_name": "Gm52955", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMGALLANSPLLLCWLVFGAQLSVGEGILLTLTLMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKQCGVFFFALNLALFGIFAFAQCFNPLVYGLHNRDLQSKLYPSLCCQKKLLP", "length": 296 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KLA7-1", "protein_name": "Predicted gene 7582", "gene_name": "Gm7582", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMWALLANSPLLLCWLVFGAQLSVGEGILLTLTFMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKRCGVFFFALNLALFGIFAFAQCFNPLFYGLHNRDVQSKLYPFLCCRKKLLP", "length": 296 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KM50-1", "protein_name": "RIKEN cDNA A930007A09 gene", "gene_name": "A930007A09Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSLSELPQKNTDLAEMQSGPLGRCSHFFWLGVAFDAVGVAVLFTGVFANLLFYDMLLYLGSIIIFVSLLWWISWYTGNIEALPEDPLRGTSPRESGVHRSGSRRFSLTLRSVSDTFQRIRRRRRRRLHPRVVQRISSISSTDPGQLERNCDARTSGGRALFRSAKPEAVLNQFSRVQTSKSLPLGIVHTGLSICTSRSQPVFSVTSQTYPLASDSNSQMAMSSDSHVYLDSHSQEHSKISVASQIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASQIYPLEQEESQSHFLVPMPSDSFPVVPMTSQSQIQGSLAQQSHLQNLPLASQTPETDKASKSHTLAKGVPGVPPGSAQTQHPQASLAQTSQISSPVRKVPKN", "length": 636 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8C2LDI6-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "LOC100774916", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRLWCKAIFAGYKRGLCKQRGHTALLKIEGVYARAETEFYLGKRYAYVYKEKNNTVTLRCKPNKARVIWGKVTKAHGNSGMVHAKFRSNLPAKVIGHRIRVVLYPSRI", "length": 110 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LMV8-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC100755948", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTNTEGKRRGTRYMFSRPFRKSEVVPLAMYMRIYKKGDIVDIKGMDTVQKGMPHKCYHGKTGRVYNVTKHAVGIIVNKQVKGKILAKRINVQMKHIKHSKSRDSFLKQVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPQLLEPISYEFMA", "length": 160 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LSR6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "LOC100751955", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSQDEGEKENPMWELHICKLCLSICVEESRDRLTRAAKVLEQLKGETPVFSKARYTMRSFGIRSNEKIAVQCTVHGTKTEEILEKGLKVQEYELWRNNFTDTGNFGFEIQEHIDLAIKYDPSIRIHGLDFYVVLGRPGFTIADKHRTGCIGAKHRISKEEAMRWFQHKYDGIILPGK", "length": 177 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LUM6-1", "protein_name": "Tubulin alpha-1C chain-like", "gene_name": "LOC100757824", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETDTGKHIPRVVFVDLEPTAIDEVRTGTYRQLFHPEQLITGNEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSRFTSLLMEWLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYPTPLPE", "length": 288 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LZU4-1", "protein_name": "Glia maturation factor", "gene_name": "Gmfg", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSDSLAVCEVDPELKEKLRKFRFRKETDNAAIIMKVDKARQMVVLEEEIQNVSPEELRLELPERQPRFVIYSYKYLHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRATDDLTEAWLQEKLAFFG", "length": 142 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2M625-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "LOC100755487", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIQTFREHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSGGLLVSSGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALSHEDETIVVGMTNGILSVKHRKSEAKKESLSRRRRPAYRTFVKGKIYMKQRDDIMINRPAKKHLEWYDKDLKSFRISKALDRVLEPNCVIKTPEVTVSIIKELNRRGVLANALAGRDEKEITRVLNFLIRNLSQPRFAPVLINAAEIVIDIYLPVIGQSPVVDKKFIVLQGLVEKEIDYQRELLETLGMMDMLFATMSRNDSVSLSENVPAELPEKTESPCQPGDTDKNS", "length": 527 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2MXE3-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "Gpam", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDESSVTLGTIDVSYLPNSSEYSLGRCKHATEDWGDCGFKTTFFRSATLKWKESLMSRKRPFVGRCCYSCTPQSWERFFNPSIPSLGLRNVIYINETHTRHRGWLARRLSYILFVQERDVHKGMFATSVTENVLNSSRVQEAIAEVAAEMNPDGSAQQQSKAIQKVKKKARKILQEMVATVSPGMIRLTGWVLLKLFNSFFWNIQIHKGQLEMVKAATETNLPLLFLPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTLIHKLGGFFIRRRLDETPDGRKDVLYRALLHGHVVELLRQQQFLEIFLEGTRSRSGKTSCARAGLLSVVVDTLSSNTIPDILVIPVGISYDRIIEGHYNGEQLGKPKKNESLWSVARGVIRMLRKNYGYVRVDFAQPFSLKEYLESQSQKPTSAPLSLEQALLPAILPARPNDAAESEDTSSNEPRNTADEAFRRRLIANLGEHILFTASKSCAIMSTHIVACLLLYRHRQGIHLSTLVEDFFVMKEEVLARDFDLGFSGNSEDVVMHAIQLLGNCVTITHTSRKDEFFITPSTTVPSVFELNFYSNGVLHVFIMEAIIACSLYAVLNKRGSGASAGGPGSFISQEQLVRKAASLCYLLSNEGTISLPCQTFHQVCHETVGKFIQYGVLTVAEQDDQEDVSPGLAEQHWDKKLPEPLNWRSDEEDEDSDFGEEQRDCYLKVSQSKEHQQFITFLQRLLGPLLEAYSSAAIFVHNFSGPVPETEYLQKLHRYLITRTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKRKRVSVLELSGTFLPQCNRQKLLEYILSFVVL", "length": 827 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8D1BQI2-1", "protein_name": "Uncharacterized protein", "gene_name": "LCE5A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSCQQNQQQCQPPPKSLPKYSTPKFPGPCPPLVSSCCGSRSGHGRCYSSGGGGCCLSHHRRRRYHPCQPQSSNCCDSGGGQQSGGSGCSHSSGGSGCCSGGCC", "length": 103 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1VKI8-1", "protein_name": "Uncharacterized protein", "gene_name": "NCR3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARMLLLILIRVHSGSCALWVSQPPEICTQEGTPAFLPVPSTPARGDWPLALSHGTGTNWPQGRRVVVLGQGVRTGNGTPLVVERGPAQLATPTIFLLRAGFYAFGFLSVAIGSTIYYQGKCHRHMGTHCRSADGL", "length": 136 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5XVN6-1", "protein_name": "SPATA31 domain-containing protein", "gene_name": "LOC689526", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESFLLLMNSAIESWMNTSTMDIATDLSIAILCGVGLFFLLIPFLKDCPLSPASGNKTDIPKDVKRGRSNTRRKTDVEKGCRDGGKTVEETKTPSQPMKILTRQLLQDSTPQIFWNSSQKLDHLLLSQLFSSLTSLEDLILQKFNRRFWGTSSIFSESVVAMAHVLRNPSFPQQKSVRFSDPCVTDQAPSQAQGLRQQHRYHPRLHRQRKTSLVGMTWVPEKKILPISTPKQIHPCLKRRAYGVSCPTTEKGIQTSLPPECLSHKHGLYSKAVKGYVKRNHQKAIGKPPGNWLRDTLKTKAIRPASILSEHLRMFLHHKEPQTKDKATNVEKQQGTCIRSPPSKKLKQFQGRFPPNTDHYCKRRPQLSQPGQPSILNSKSYKLRKIIQSVLAGMTLMKDRADFSMQSQFSQAPQSSVCNAKRYKYSKRMGSVPRRVPLKKDTARYDMGKPIKKCLGAGTKNVPHSACSILGKRLRARNLALKKGQASVMNPTGNYCLHDSKAEMKLASNNTALPVQCRRTPYLQILEALNPIPPGVLASKLPRIVFPSSPICDFKEEYYSKAATVLKNLHHQDPGGTRVKSTSAASLESALSMCSAAKIQKTQRAPPPAASRGLSKAHTDLLKRHLSIQHSALYFEQGRIIQGTGKGSLQQNTNPQKAKHAPLKSFHEGDSRHHSWNGTMVGPGKRVPPAAAKQTKAVEVKKETPYAWSLGSNESHTGKDINISPRVFGSLGAKRSPGHLQTCTPQHSQDSTLRTQGHRNIILCSNKQPQPRPGRHDPECPSTVHPAKVNLSSEHSMSSFQNTCQKPKTAQGSCERADTKENRVLKDKIRINHLKDLCPHKERQGSIRPTAISQGGRLGRSRPCSLSSTQLKDTAKTRTSDKRQATSKSSWKSDIREVLKYGYVGSKDIIGQEDTSKKDQPPAVTERTEEDWTGEKAMCNMIAHLQYLTNFLFEIMEDTEWDPSKLQGCEVESLTFQLGSSSDSSEGDDDINQGTSTSTMSFGQTSPEMHNCSFTKTGIGDKTQSEIKAKTACDQHLNQVNRGMFSDQLPMPKEYDLSCRYRGIQHQQELGLPDQTFYQYKLRMTHCPHGGTKGHNYSFGYRKLGDQQQPDFTHKALDPHQSAKEDMGCVSCLSPKGSRPVKHRRTDCFSP", "length": 1151 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5XWP3-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "ENSRNOG00000063695", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRDMCHMTPYRLLCVLVALALSGCNVAQEVTQVQSTASRQEGEEVTLDCSYETSYVAYYLSWYKQHLSGDIIFLIHQISSSTAEERSGRYSLVFQKSLKSISLVISASQPEDSGKYFCALSDLTQC", "length": 127 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y4M0-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "LOC108350588", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQRRGGSSGAKFRISLGLQVGAVINRADSTGTKNVYIISVKEIKGRLDRLPAAGVGHMVMATVQKSRPQLRKKVHPAMVIRQQKSCGRKDGVSLYFEEDAEVIVNNKGKMKGSAITGPIAKEHADSWPRIASNAGSTA", "length": 140 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y5C9-1", "protein_name": "Ribosomal protein L32 like 2", "gene_name": "Rpl32l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALRPLMKPKIIQKRTKKFIRHQSDRYVKIKRNWRKPRGINNRVRRRFKGQILVPNIGYGNNKKTKHMLPSCFRKFLVHNVKELEVLLMCSKSYCAEIAHNVSSKNRKAILERAAQLAIRVTNPNDRLCSKENE", "length": 135 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y6V7-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "Pate4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNTEPLFDIVINCPIAPQFILKILLFPYPANTNLICNTCNRSENSECKNGTGQCTAPEGGSCSTISIYHGQRHVLSKQMCLGHCEEKPHYNGDFMIYVMCCSKNLCNSF", "length": 110 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y7P1-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "ENSRNOG00000069815", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEREKEQFCKLFLGGLSFETTGESLRNYYERWGKLTDCVVMRDPASKRSRGFGFVTFSSMARPHSIDGRVVEPKRAVAREESGDPGAHVTVKKLFVVGIKEDTEVHHFRDYFEEYGKIDTTEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSGQEMQKAQSSRSGRGGNFGFGNSRDGGGNFGPGQGSNFRRGSGGWESSDGYGSGRGFGDGYNGYGGGTGGGNFGGSPGYGEGRGGYGGGGPGYGNQDGSYRGGYDNYGGGNYGKGNYNDFGNHNQQPSNCGPMKSGNFGGSRNMGGPRDEHRSFPSWKGYNGVFGKQSPLTWIKTHSL", "length": 347 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZKP8-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)]", "gene_name": "Gpd1l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGATTLRVCIVGFWSWGSAIAKIIGTNVKNQQKFASTVKMWVSEEAVNGRKLTDIINHYHENVKYLPGHKLPENVVAVANLSEAVQDADLLVFTTPHQFIHKICNEITGRVPKKALGIIHMESIDEGPRGLMLISDIIREKIGMDVSVLMGANTAREVAAGEFCETTIGSKVIQNGILFKELLQTSNFCITVVDDADAVELCGALKHIVAMGTNFCNGLHCGNNSKAAVLRLGLVEMITFTRIFCKSQVSTTTFLESCGFANPITICYRGSDCKEAKTFPRIGKTMGNLQKEVLNGQTLQGLKTSALVYQFLKQKGLLAKFPLFVTVYRICYEGRPSTEILTCLQNHPAHM", "length": 351 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZL63-1", "protein_name": "Ankyrin repeat domain 13a", "gene_name": "Ankrd13a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSDQSRKAAAEGGSSPMVWSRPARAPPGGRADGRGPIVERTTGEGRAGDESRRARTVGFVRGDLGLPKGPAVPQNGGGRVSRRGGLVGRHGAGLGPFRKSGPPPRSVMERLAYFPVRGGSAGSSRFASCQRGRERAGRGVGAAERVPEPVPSPARDPGPPAPPAPDSEALVVRCARHLAARRSPPLALRPVGRAPETPSGGSRLVAGGRSGLGGDLLAMSSARDTSSRFPLHLLVWNNDYRQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSLIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITKIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGQDLTTECATVNNPTAITPDEYFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEERQSVEGTQAECAASDATNFEVDQSVFEIPESYHVQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPASNGGVSHAHSYEAQYERAIQESLLTNMEGRCPGGLSDSSRFDSDLRLAMELSAKELAEQELRLQEEEAELQQVLQLSLTEK", "length": 809 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZP24-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "ENSRNOG00000064315", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAVPEKEKKVAAVPGTLKKKKVPAVPETLKKKRRNFSELKVRRLRKKFALKTLRKARRKLICEKAKHYHKECRQMYLTEIRMARMARKAGNVYVSAEPTLAFVIRIRGISGVSPKVREVLQLLRLRQILNGTFVKLSKASVKMLRIVEPYIAWGYPNLKSVNELIYKRGYGKIRKKRIALTDNSLMARSLGKFGIICMEDLIHEIYTVGKHFKEANNFLWPLKLSSPRGGMKKKTTHFVEGGDAGNRETR", "length": 251 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZPV0-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "ENSRNOG00000066253", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIVQRIFRLSSVLPSAVSVHLRSNPGVTAVAFNKEPDPVQKLFVDKIREYKTKRQVSGGPVDTGPEYHQDLDREPFKLKQLYGKGEMDKFPTFKFEDPKFVVIDKPQS", "length": 108 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZRI3-1", "protein_name": "Natural killer cell cytotoxicity receptor 3 ligand 1", "gene_name": "Ncr3lg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQSCQRGPENAHMHPKGPCCSALCFLCSLGSSPHGSSLGPLRKCGRRSKPVQSSPEGSRVAEWPDGLLSLLLLLWSLLPSAGGLELEMAGTTQIVFLHEDVTIPCKILGSLHLDLSIVGVIWSLKKDGDESEVFKFYGDQLEAVRPGANVSLLGLEHGDASLYLPRFELWEAGEYQCKVVVTPEKKEGTTRLEVVAHPNMSLSEKPATARGGKEKLIICQLDGFYPEALDIKWMGSALKDSHFQEITEGVVTGPTVKNDDGTFSVTSSLALKPALEDHMYQCVVWHRSWLMPQSLNVTVFENTRDSTHGTVPPTAEVGPPVSEPRSVMIYVTIIGLCILLFSVIVCGLWKWKRLTTSNTGLCLRLDVRC", "length": 371 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZS91-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134482834", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTETEEELPTPTPKPSISEEGNFHSQYQVLGTSGQGGNGKVLLAHNRLTGTPVAVKVLRKDKQWFQPAMMEANIMRKINHPNIVSLIQVIEKETRIYLIMELVEGQELYQYIRESGHIEEDEARQIFEQILSAVSYCHGKGIVHRDLKLDNIMIDKNKKVKVIDFGLSTQFPPGKMLNHHCGTHSFGSSELLLGHRYDRPKNDMWIIGVVLYCMVVGKLTFDSVIIQDLQRQVVAGVYPAPCGVSKELEDLLSKLLRVNPNFRPTARKAMKHPWFKEHWNGLIVPYEELLPLTPDPAILDAMKSIGLQASVVKHTLKQRKYNEEMATYFFLQKQALQGDGCTAQAQQVSPVAAPFPSLDPAAAFRLEPKRSGSLPVLGTLRVSSSHGHVSHYGQNAHPKGGKRYTVAGRLRPLPMTPTQDHYHKCAVSVPCIQTTSIFSEKSSNKKIKEDNPLSHRAPLEDKPIPSRVRHRGFKGWTRNIANALIKLCCCMPRRKKPRLGQNRISPQK", "length": 509 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZT61-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134479845", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVAFFLGQGSYGSVKLAWHRRTQALVAIKTVEISKNTIRAILSEMTTLELLHHPNIISLFQILVTANQIHFILQYAPGGNLVQLISEEGPLPEEKAKKMFGQIVSAIRHCHSLDIVHRDIKPQNILIDGEGNVKLIDFGLAVKCRPGTLLSRHCGTRGFNAPELVLRQPYDGKSSDVWSLGVLLYFITTGYFPFRGNTIDEIEQKITTGTYTVPHHLSGQLENLIHQIFTVSPEMRPSIEEIENHPWIKKCELKIPPMSDPDYKIIEMLCGMGYNAKDILESLQKKRYDEPMGAYLSLKNHVSEGYDLASITPTKPGDPCPPPPPSPAHPSVFGLPLRRRASEPNFGLLHRQPSREQNPLDLILSGLNMGRCVSMPPIAVYYPKKQRSTSTRALHSRPVASPCVYNNMLGVEIILPHKQDIEMNTSSPPQTMGWFKRLRKGIGDCFSRLCCFPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZXB5-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb2l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLSSLPGRNLAMARLLLLLLSAACLHTGNSAGYQEKNDFGVDQPDVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKHYHGEFIYTSTRPFIHEHFKGRLIMNWTPGQTSGVLRILNLKENDQATYFSSVFLQTPEGMKLWQSIPGTKLIIHALDTTMRSPSIIPSVVPTDDLEYTQGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZY57-1", "protein_name": "40S ribosomal protein S26", "gene_name": "LOC134478821", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGPRRPRQEAGSKPRELQQRVLASVKRRCLFSSLGSNTTKKKRNNGRAKKGHGHVQPIRCTNCARCVPKDKAIKMFVIRNILEAAAVRGISEANVFDAYVPPKLYLKLHYCVSCAIHSKVVGNRSCEARKDQTPPPRFRPSGAAPQPPPKPM", "length": 154 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYE5-1", "protein_name": "Oligosaccharyltransferase complex subunit", "gene_name": "Ostcl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METKHSALLRTFPFLVLECPNLKLKKPPWVHMLLAMTMYALVVVSYFFITGGIIYDVSIEPPSVDSMTDEHGHQRPVAFLARRVNGQYIMEGLASSFLFTMGGLGFIILDRSNTPNIPKLSGFLLLFDFVCVLLSFFIARVFMRMKLPDCLMG", "length": 153 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYN2-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "AABR07051831.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAECCVLVCPRPMCIPPPYADLGKAARDIFNKGFGLGLVKLDVKTMSCSGGEFSISGSSNTDTGKVSGTLETKYKWCGYALTFTEKWNTNNTLGTEIAIENQICQGLKLTFDTMFSPNTGKKSGKIKSAYKRECINLGYDVDFDFDFGWLAGYQMTFDSAKSKLTRNNFAVCYRTGDFQLHTNVNNGTEFGGSIYQKVLCEDFDTSVNLAWTSGTNCTRFDIIAKYQLDPTASISAKVNNSSLIGVGYAQTLRPGVKLTPSALVYGKSFNAGGHKLGLDLELEV", "length": 284 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYX3-1", "protein_name": "Methyl-CpG binding domain protein 3 like 3", "gene_name": "Mbd3l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LGELGNAGRLTGSMIPSRLQKRRKIQVAKSKRKAKHKSGTTLRNPLRLTSCIFPQPVTVITSYPENKTRYRRDEAKLKKPQQLCALERLKNFQFGGDSKENLSCPLELANAVERIARGMQDEASNQSGDKDQLTSGQVTSDQPPYLETNEHVALQLSPSFSSQGVTLPVPLHLSPSYFLRKVTTGDIQRQAWKVKKARKRLAEALEADRLARQTENMRE", "length": 219 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZU9-1", "protein_name": "Keratin-associated protein", "gene_name": "ENSRNOG00000070302", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "SPSTCELSSSLHSDCQETCIEPSICQRSCVASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSLKSFGGFTGSLGYGNSGFGSFGFGSCGIRSQGFGCNFHRPGYFSSKSVQSSYYQPGYTSGFC", "length": 127 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZY5-1", "protein_name": "Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein", "gene_name": "ENSRNOG00000064452", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKIKAVTEESEAQGEGCSQQHRYQELLVYLNPIAQHPGFPPPDLRKIEKGKKKKKRRPTKQKQIRHGVKEVQKFVNKGKKGIMVLTGDTLRGTAIFQLCARTRICPTSIFPLTDLGAAMGSKHPTCVIMVKLHEEYHEAYDKCLEEVQTLATPL", "length": 155 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A2Z7-1", "protein_name": "Developmental pluripotency associated 1, pseudogene 1", "gene_name": "Dppa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMPPQVLISGLLLLLPAAWTTTVTSSDQLWNNHTEVVPTQSPLKISTKDLYIGTSVSAALLILLAGVLAVLKYRHRRKKILESAVVFHGFQNGVFQSTEQSQAVDVYVIEDSKVPVAH", "length": 118 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3D9-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "Snrpd3l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQVYICDTKIRFPILPNMLKNAPVLENLKNKNQGSRAGQGKAAILKAQVAARGRGHEMGPWKLPEAKTVFSIKENFPSCLLLGF", "length": 142 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3N0-1", "protein_name": "Uncharacterized protein", "gene_name": "Pramef20-ps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQTPPTLEKLAIQSLIRNEDVAMSSLGELPAVLFPALFKEAFTGKHINLVKEVVAAWPFPCLLVGALMKTPNLETLQAVLDGVDMQLTRKFHTRRTKLQVLDLRNMHHYFWNIQAGEEDSSCSAENSKEKKVVKVFHRYALRKRVKVIVELYIHSCLKEEQTCLLKWAQQRKGSLHFCCTKMKVWNLSLCGIGEILKVFDPQHITELELHTEWTLLELAHFAPYFGQMRNLQKAFLAPLHRIMFSNSNGKRDREAKCIKKFISQFSKFNCLQHLHMFCVHFLRDHMNQVLGCLMTPLTLSITYYLISQKDLDSLSRSQSLFQLKHLDLRGVVLCDLDIMPLRGLLEKVADTLETLDLQWCKMTDSQLYALLPALRHCCQLTMVNFYSNNFSVPILKDLMQHIANWSRIRVQQYPAPLECYDDLAQVSVKRFAKLSSELMYTLGVIRQTKNISFATDICHTCGQRCVYHNGSRLCCCWH", "length": 480 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3R7-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "LOC120093241", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAARKALTVVAVLGSGAGVGSILFALVTPGELQKQLMLQEMPERDSRRRDAAVRTKELVMATLKDAAATKENVAWRRNWTVRGDGRSA", "length": 89 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3T5-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "Mrpl58", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EHGGRLGPTLEPEPSWNLVAPAARALCSPDSAQTGERHRVQEHLQPGQAVPRIQGRGYRLEGPGEPRKAGRKGRFLLLLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAKASQVPKEPSKEDAQLQRLRIEKMNRERLRQKRINSTIKTSRRMTMD", "length": 211 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A478-1", "protein_name": "T-cell activation Rho GTPase-activating protein", "gene_name": "LOC134485907", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDVELVRANQTCTCKTIFFYWATGNALATFRSKEQKVQWYTFLTRSINEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHNIEDYQLWFSPGHKETPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERPRKSCMTSCFHGGSVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTNSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAAASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQSEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKTLFGRDLSKKLSIIKFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKSNTKKLEMSSAVPHEGGPTAGHNGTTSKYNVPQEKILHD", "length": 834 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A4C1-1", "protein_name": "RRM domain-containing protein", "gene_name": "ENSRNOG00000063783", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LTCCAINSDPHPDSGLKMEGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLIDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGRGGNFDGRGGYGGGGGGSRGSYVGGDGGYNGFGGDSGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDSYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGRMKRGRFGGRSSGSPYGGGYGSGGGSGGYGSRKF", "length": 350 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5E5-1", "protein_name": "Paired immunoglobulin-like type 2 receptor alpha", "gene_name": "Pilrb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQILLLLLSATCLHTGNSGGYTRKNYFGVNQPAVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLILNWTQGQTFGVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHGVICSLLISPQLSYDHEDPLHHHLCRPHSWPGEHKGPKESFTAEPGGHHWDGRGQSCSHHPPLRMDDLSVVEAKASRVTPKPQPE", "length": 230 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5T5-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "Rpl21l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRGTRYMFSRPFRNHGVIPLATYIRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRAYNVTQHAVGIIVNKQVKGKIPAKRINVRIEHTKHSKSRDGFLKRVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPELLERSPYEFMA", "length": 160 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A8T3-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RMNCSQAPGFILLGLSRDPEKWQLFFSVFLVLYLLGLSGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKILQTLWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCGVLVSGSWGVAHCVSLTHTLLLSQLYFHTNQMIPHFFCDFGPLLLLSCSDAHLNEGLMMALAGVFGISALLCIVSSYSCIFYAVARVPSAQGKRKALATCSSHLSVVLLFYSTVFTTYLKPPSSSYSSGEVVAAVMYTLVTPTLNPFIYSLRNKDVKSSLRRILNMVKSPD", "length": 310 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A969-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000067430", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFFLFWTFPGLELDKLALLSFESSSSIHPRACASTPAFQRSHNPGDAAQQEAKQREAEMRNSILTRVLDQSAWVRLSDLALVKPDKTKAVEHRVQMARYGQLSGTVSEQGFIETPEKVSQQTEEKATVKFNRREVTDSDEDDDY", "length": 144 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A9H4-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "Art3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQATARGVIKRKAFPGRQLSLSTTSCPGGKITPAESGNRFESGHHLNVLQRHKRQKRKMKMGHFELVTTLLAAMVLMDVFQVQAEVLDMAENVFDDEYLKCNSRMEMKYIPRMHGEELANDELLQSVWDKAGIQWEAQKAQLSLPKNFKDAYGIALTAYVTEAQDQSPFYHTFNRAVKIAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEESYKNVVYSTSPNISFAFGEQNQARLGNFTLAYSAKPQTANEQRLLTIQTCFGVAVGKLLNKESEGIVLIPLSEVFQVSRKGTDDDLILHSINSTCSYYECSFLGGLKAGSCTTNPENPDPGYLNNPDLDSQKLEDSGRKSLDSVKMPEIKVLQGEENPLLPDEKPEDRNRGKANVPTPGLVPVPGPKSHPSSSSGHRLLPSDTASTILLIAAAVDFIAL", "length": 433 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AA84-1", "protein_name": "Ankyrin repeat domain 10", "gene_name": "Ankrd10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAGAGAGVEAGFSSEELLSLRFPLHRACRDGDLVALCSLLPHTPRAHLAAEDSFYGWTPVHWAAHFGKVGAGTLRRHFPRGVLLGSERTPPCLESAATARSAPPAPPEGSRAHVQQSGLGVKGWGRGGAEAALAPPGVQGACAAARSPGPRGARGVMGGGAEMGSVWPAPRRTQGACAHLWLFRAGRADRMQLRRFARRPSGFGEWCGRLLLEARREPGASRSCLMETGRRAPLRHKGMDAALAAGGVRSAPAVVDGGLAARPTGPLSQLGPPCLECLIQLVRAGASLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVGNGAQTDLRNASGLTAADIAQTQGFQECTQFLLSLQNHQMSRFCPNGTLSGGHENILPNHINLGTNRKRCLEDSESLGVKKARTRVPSLDHTMPLANGDAEDDADRMHVDREFAAVSDMKNSSSVLNTLTNGSVINGHLDFPCVAQLNGMESRSDPCLTGSNGISNGQPFPSGQGPVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDIGESLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGAMQLHHGS", "length": 621 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ABF4-1", "protein_name": "Nuclear transport factor 2", "gene_name": "AABR07018058.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDKPIWEQIGSSFIQNYYPLFDNDRTQLGAIYIGASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIMAQQYQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNSS", "length": 127 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC04-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLSQNKTLKSIEEVALHVILLCQVGVGTVANFLLFIHNFSVILTNCQLTPIQVIVTNLAVASAFNLLLLAFPNNVTLFVPRKAPSDLSCKLWYFICLVARSTNLSSTCVLSTYQFVMLLPGNWSRVILKGRAPKIVNYSCYGCWIFSVLNNAYIPVKVSGPQKTQNDTDFKDKWVCSTSGFSVGMSFLRFAHDALFISIMIWTNVSMVILLNRHHHRLQHIHSSNQDHRAYADTRAAHTILMLVVTFLSFYLLDCICTFFHISFVDSRLLLRRIKEVLTASFPTISPFLLIFRGPKNPCSLLSRS", "length": 307 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC51-1", "protein_name": "Non-histone chromosomal protein HMG-17", "gene_name": "Hmgn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKADGAGDAK", "length": 90 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC66-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "Eif6-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVRASFENNCEVSCFARLTNTYSLVAIGGSENFYSVFEGELSDTIPVVHASIASCRIIGRGTSVWGTGMGYWYPTTTTDQELQHIHDSLLDSVQIRRVEEGLSALDNVTTCNDYVALVHPDLDRETEEILAGVLKVEVLTVADQVLVGSYCVFSNQGGLVYPKTSIEDQDELSSPLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDRLT", "length": 245 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ACC5-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000069094", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LPLLAFEKYVVCDGELQRLQVSCEVLGDVDPPQRLSASVVQMKQSVVEFLGTLVEQDAQGAAEDMDNALVGDNEEAEGENNSTRTNSDGPFTERPNQRLNNR", "length": 102 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AEL7-1", "protein_name": "Protein phosphatase 4 regulatory subunit 3C like 1", "gene_name": "Ppp4r3cl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDKLYRVKVYVMMEDKQWKDIGAGQISSKYIDRLQGVCLLVHSESDGSPILECKIQPNVPYQKHQGKVIIWSEAKNHGTAIHFQEPNDCQETWEVICQVQGKDPNVEITQLLTDDLESFKDMLLSWNKVEMSSCELHTLENIADLLSFVNEAPSHKKILTLVLEKEGYIKKLLQLFKTCEKHQNIDGLHYLNNIIRGILFLDNIHLFNIMFSDEFIMDVVGCLEYGPGLDEPKQHRQFLTQNVKFKNVMQITHSQLRKKIQQTYRMQYIYDIVLPTPSIFEVNLLHDLSTMIFFNKIEIITMLQEDEHFLLEVLAQLKDNTVSNERRHELLLFFKEFCAFAKTLHFQKKNTLLKTLIKLGIISALKVVVHMHDYQIQVAALELFAHLVEYSPRLIRAYAMKEAQYSEDNDGLLINIMIKQMTCDSDPEFSRSIILTTVLHAILDPENMRVTTKGHERRKFLNYFYRHCMNKLIEPILSITVENNSDDNRVNICPDNYQNAQLLGAILEILTFCVQYHSKYVKNYIISKNLLSRILILMSSKHTFLILCAVRFMRKMIGLKDKMYNLYIVEKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRQENIKSLIANIVEKFFMFFESIQYVQTFKGLKTKYEEEKKKKRERQLRKSLHNIIYQRIYCRHIKAMEVKVKADIFCRQITDKEEEREKGGGGGEGGGGRGGEGEGGREGGGREGEGGGGGKGGRGEGGAVLSMGSDIPSHYDMFVKINEMNERENVIECRKRKSSATSEYSTSCGDTSDNGISTVYCSSLVPLVDYAYDTDGEDDDGSYGNNENEEEEEEEEEEEPPKKKPYFHP", "length": 840 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AFG0-1", "protein_name": "Cytochrome b5", "gene_name": "ENSRNOG00000064959", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAKEKGKFEDMAKDVKCYTLGEIQKHQDIKNSWAMLHHRVYDLTKFLEEHLGEEEVLRERAGGHASENFEDVGCSTNVQGLSKVHIIGLFHPALITTIKLNSNWWDQLCSPTSQVVVAHTFNPSTREVGAVGFP", "length": 135 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGM4-1", "protein_name": "Proline rich 18", "gene_name": "Prr18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRLLGRVMSFSPMPPPPPPPPPPARTQGGPAARQLSRRPCGPPAASPPAPAAAAAGEKKRRPPEMLLSSSWPSATLKRPPARRGPGLGPGTPQPPTSARVPPQPSPGRGGTSATCSAPRRIACSHIPAGSTASGTSAGAGAGPEDATRFSLSLTPEAILVIQRRHLEKQLLARPRRPFPAPSADPRRPLVPCPRTRSSTLRRGGPTSVPDAPLAVAVSSRPPRASLLPGGLQATMPSPRPSSLRPVLKVSLLNEKHKYDDEEYEEEVEVVDEGLVRKCTEWLRGVESAAAARGRTGHLDSLPHLSTL", "length": 308 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGS9-1", "protein_name": "Olfactory receptor", "gene_name": "Or5aq7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVWNSTGVKEFILIGLTENPNWQVPLFLLFCIIYFIILVGNCGMIFLIWLNVQLHTPMYFFLSNLSFCDICYSTIIAPKMIINFLSEHKSTRLFACILQSFFFAVYATTEVVLLSMMAYDRYVAIANPLMYTVIMTQSICTQMILASYLTGLINSLIHTIGLLKLNFCGPNIVNHFFCDVPPLLKLACSDSHINEILLLVFSGIIAISTLIIVIVSYIHIIIAILRIRSAMGRGKAFSTCASHLTAVALFYGSLTFSYIQPSSQYSMEQEKVSAVFYTLVIPMLNPLIYSLRNKDVKEAAQKLMLGKRNAC", "length": 312 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AIA3-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065493", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIFVPFFPHPGSIRKDGVVYAHTMENSSNSPRETREPAPLRRTWRGCFQRALPRVSKFFRRGRGSTGGWDNGSPRQGPMHSDQDLRHLRSLLSKESCPVMSK", "length": 102 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AK52-1", "protein_name": "Olfactory receptor", "gene_name": "Or9s14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIEVHRNGSLSAMSLQGFVLLGFRGGAETQALLFTVFLVLYVVTVLGNLTMIMVITLDARLHSPMYFFLKNLSFVDLCLSTVVVPNALASIFFSSKTISFAGCATQFFFFSLLAATEAVLLAVMAYDRFMAICSPLRYPVTMCPMTCVRLVLGTFCVACLNSIVQTSLTFRLPFCSSNRIDHFYCDVPPLLQLACASTALNELVMFGICGFIIVCAVFVVIISYVYITVTILRMHSGSGRHKLFSTCGSHMTAVSLFYGTGFAVYGQPGGVASMEQGKVVSIIYILIIPMLNPLIYSLRNKDVKDALRRLGQRHSLAKESG", "length": 322 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMC4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "ENSRNOG00000068014", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCVFKNAWGHRNMCSMALCSQFGTHLHVSLTDAHSLSCNLIIRSPTKAEPLRYEGHCSMDEIVFLSFNNVNKTMPLGNQEKMANATKVQKCLTQWIDLLGQDLRDKVSEIKVHTTKTSGHPTLRVTMLSKHRHGEIIGASWEFNISENYSFILDLKTMKWKPQDIMKEWKDDETLMKHLNLSIVECSQKFNEFLNQHEERTSRYYLDSALPPAPPPLFKGFTILLWHSYTPAISPTSSDTHSSFINFRDGLIDINFPL", "length": 258 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMN7-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "ENSRNOG00000070681", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPGYITLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLACAEKKAAGKGDVSTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVLYCIIKGKARLGRLVHRKTCTTVVFTQVNSEDKGALAKLVGAIRTNYNDRYNEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMX9-1", "protein_name": "Ribosomal biogenesis factor", "gene_name": "Rbis", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKNKLKGQKSRNVFHIASHKPLKAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELHHEKEPANVDEATRLMAQL", "length": 96 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ARJ3-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "Or8b101l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTLGNVSSVKEFILLGLTQQPELQLPLFFLFLGIYVVSVVGNLGLIVLIVLNPHLHTPMYYFLFNLSFTDLCYSTVITPRMLVGFVKQNIISHAECMTQLFSFCFFVIDECYILTAMAYDRYAAICKPLLYQVTMSHQICLLMTVGVYMMGFVGAMAHTGSMLSLTFCEGNIINHYMCDIPPLQKLSCTSTSINELVVFTVVGVNVIIPTLTLFVSYTLILSNILSIHSAEGRSKAFSTCGSYIIAVSIFFGAVLFMYFKPSSASVDGDKVSTIFYTILGPMLNPFIYSIRNKDVHVALRRTLKKRIFT", "length": 309 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ATM0-1", "protein_name": "ELAV-like protein", "gene_name": "Elavl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDAGAGSCRYKGLGAAAVRPRARSAQRGPVGGREGGREERTHYPAPDRPDRGPAAEGRAAEISVGKSDFCGPRGAALRAPSTARPLPPSTCRQGSGRRSAHPQARVSSRPSRAPPPPSSPLRRPQSQTPGRDPGVSTRRPPRSARPPEPPSIRTAPAGHTRMVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA", "length": 522 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AUS4-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "ENSRNOG00000062467", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTAAGKTLAVVAVLGAGAGVGSILFALVTPGELQKQSMLQEMPERDSRRRNEAVRTKELVIATLKDAAATKGNVAWRRTGQLEGQGRMCGTKGTNKCSLPIKWISQLDI", "length": 110 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AWY6-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065059", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKATKKSKNTTSDVEPSTSSAKSKKAKTCYQYQTRAGEKKSRWSGSDCSVNVQKTTKKAKRTLPRIAENNTSEKTVPPTKKTKRAKDEQLFGHYHRLMDEISTSTERGPEQSSTDSSSASTSDEESQ", "length": 128 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B5G4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "Ptp4a1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCKATHDTTLVEKESIHVLEWHFDDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAVRCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGAFNGQQRLPLEKYHPKMWLRFKDSNSHRNNCCIQ", "length": 173 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B646-1", "protein_name": "Ankyrin repeat domain 66", "gene_name": "Ankrd66", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSREARLHHQTPGDQEAGAACLLSWGGGGASFHGVNTLTLRPAMMACSTELLKDTDSVMELSKLSDMTKLHQAVAAGDYNSVKKILKKGLCDPNYKDVDWNDRTPLHWAAIRGQMEVIHLLIQYGARPCLVTDVGWTAAHFAAESGHLNVLKTLHALHAAIDAADFFGDTPKRIAQIYGQKDCVDFLDTAEPECRDHRQRGLLFDERDPDWDLKKRELELSLPVPDQNTNKKKKRIRGSTRVNHSKAWRI", "length": 251 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G1V0-1", "protein_name": "Ankyrin repeat domain 62 like", "gene_name": "Ankrd62l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRVAGLSSKKSRWLLQSLLDQQRHSLGTGFESANILLSPKYHLKDKDLRKIHKAARDGDAARVQQLLLGKHCVNDKDKKKRTALHIACAYGHPKVVMALVEGKCEVNATDSEECTSLVKAVQCQEEECATILLENNADPNIVDAQGNSALHYAVYYKNTSLAAKLLDHEVNIEATNKDGFTPFLLAVSENKLKIAKFLLMKNASIHAADNQKRTALMHAVSHDSTNLVRFVLEQGVDLFVKDAFGLTAIDYAADFKYNSNMEILLEYKAKRYEESERANLVEKSSEEDSSRRKDQQSQELENMEKEELTEPGNGTEEQEPDGGVTSVEEPRRLDDRGDDQPQEAVTAPRTREKEQELPFTDMCTVVTGKEDEDESSWDSESVSENLPLIRIGVDGLLLVNGQAVENPEKYLHWLHNRKGEESVPNETKGVGDLQAFTPAEPGLELTSEEKHEELSRNEDCQPQVEEERTQEWSGWGAPEALCAAALDHGDIGSPLTRENGHPRARQSPSVDSEEQDGGSGLNIKEEKTRDHEEWSGDFLMDRTSKESEPAAGDLLQVKDSWSLNDTDPNKGSPAKRKSKEKHKVRGEMNAMEDADDFTPLSESCSDNKAELCCNTHQAETETESCELLTRQTGNMEGGVAGEVLKTEPARSREALKETEETGEGARVKMQLPGKDELYSEDAERQQYDMALSALHLKTKQTVRQLQETQDRQREVVRSSQRMQDHLQKLQAGCSEAEAMVQEQGKKTAELQKLHAGMIHELKEKWETIASKYLPLNIQLKYLEQELLSIKIAQKQYEKLHEDQRTLQRDAVDLQHQVQENMAKLDDEKQAMALRDSNNDSLMSQVELRIKNLESNLQKLQAEKESNERNVEKYLQRYIRERELSKTLSHTLHRTNSKLSRVRTDILLVTERNRTVQNTLTTRPVPKSPGVTEHSAYVNRNPNFIASRNLEAAMSSPQPSPELMRRRLLKKQKNMVKNITEEVDKAAAELESWSLEAYPSGSK", "length": 1003 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G430-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "LOC689816", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLETCRNLSAIGYIWEDNSTEEYCKSSRRHGRPTSVTMKVNLCSFSGYKIYSGHERLYARTDGKFSSFLMPNVSPHSFPKGTLGKLTGLSSTEENTRKDSRKKFKRKEPTLQKFQRAITGASLADIMAKRNQKPEVRKAQQEQAIRDAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR", "length": 193 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G808-1", "protein_name": "Paired immunoglobulin-like type 2 receptor beta", "gene_name": "Pilrb2l7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARILLLLLSAACLHTGNSAGYPKKYDYGVDQPAVLSGVQSGSIEIPFSFYFPWELAKDPQMRIAWRWKVFHGEFIYNSTQPFIHEHFKGRLIMNWTQGQTSGVLRILNLKENDQATYFSRVFLRTTEGMKSWQSIPGTQLIIHALITTPGSPSIIPSAVPTTGLEDTRGQRTPSLLNLGAMVGMVVSKVVVIIPLYGWVIFLWWKQRTQFRRDLVSEHPWKNFVPILPAESSSFL", "length": 236 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GB91-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c117b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TNRYYFNIFMIIMQNQSFVTEFILLGLSQNPNVENILCVVFLFIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDACTSSTVTPKMIVDFFYERKTISFECCMTQLFAIHFFTGIEVIILSAMAYDRYVAICKPLHYSSIMTQRLCGILVIVSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYLCDLFPLLKLACTEPHIFVILVFSNSGSISIIIFSILLVSYGIILFSLRAHSSEGRRKALSTCGSHITVVLLFFVPCFLIYARPTSAFSSEKNAFVFATIITPLLNPMVYTFRNKEMKNAIRKMWKRLIMVSCNY", "length": 323 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GF85-1", "protein_name": "Ceramide-1-phosphate transfer protein", "gene_name": "ENSRNOG00000064148", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "HFFLEYLNNLKIMLIFLSPPTGGWASDHHSPTTGTHLRFLNSLGAAFSFISKEVVSKLQIMEHPRSSPQSEHCSSLQSMAAYEVSNKLLDLARRSGPLHSNSGCRTVLCLHRALHWLQLFLEGLRTSSEDARTSTLCTEAYSAMLCAYHSWIRQAVTVAFCALPSGKVFLEMLGEALPFMEQMCDISQFYVEHFLLDLP", "length": 199 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GFV7-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f21c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLTMYLATVLGNLLIILAISTDARLHTPMYFFIMILSFTDVCFSSTTVPKVLANYMLRSQTISFSGCLTHLYFLCVFADMDNFLLAVMAYDRFVAICHPLHYTTKMTNKFCVLLIVGSWVLTNLNALLHTLLMAQLSFCGDNIIPHFFCDATPLLKLSCSDTHLNDLMILTEGTMIVVTPFFCILISYIHITCAVLRVSSPRGGWKAFSTCVSHLAVVCLFYGTIISLYFNPSSSHFAGKDMAGAIMYTVVTPMLNPFIYSLRNRNMKGVLRKVLILRFPSKQ", "length": 313 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GGC1-1", "protein_name": "Histocompatibility 60b like 1", "gene_name": "H60bl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKGATSKCNHSLTLSLLVLLNSLGTMQVDGTDSLSCNFTVQYKVSLGQCSVNGMTVLCFDDVRQNSPVCKTEKKGNATKLCNDLNQCLSYSFYEMMKLESGLFESKGNHTLRVTVQSQYNQGEFMDGCWAFMIDRQYPFYFYPKNMTWRENQPNAIKTMSQWENNRELFQSLKFLSTGDFSLCLKKLLTDSRELTRSTIKAPDTTQPTSTTQSPSTGNSTPAMSSNQSPSTGNSTQPTSTTDYLIVFEFTAIFLALIVVSMEKKKVLPAAPLPLQYELQSPSPAVLEES", "length": 290 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GIM2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x11c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLFNVTEFIFLGLSPNKEVQRVCFVLFLLLYMAIVLGNLLMVVTVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLILDLLAEMKSISVWGCMTQLFFLHYFGGIEIFLLTVMAYDRYVAICKPLHYTSIMNRKVCIVLVGTAWTGGFVHSFAQIVLIFPLPFCGPNTIDHYFCDVLPLLKLACSDTFLIGLLIVANAGTLSVIIFVVLLASYVVILFHLRTLSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRRSDTLPVDKMIAVFYTVITPLLNPLIYSLRSAEVKKAMKNLWFRTMKADEK", "length": 309 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJN1-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1-ps20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LSQSPPRNRTEQLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNFGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYGGGGQYFANPRNQGGYGGSSSSSSYGSGRRF", "length": 319 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJR0-1", "protein_name": "Aspartate aminotransferase", "gene_name": "Got2-ps6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLHSRMATTFHPGLAAAASARASSWWTHVEMGPPDPILGVAEAFKRDTNSKKMNLGVCAYRDDNGKPYMIPSIRRQRPRLLEKIWTKNAYPSGDWLVFVRLLQRSEPVFCKDILSLAKMSFYPNHPGETTRPSSGMPACSYKVIDTMTHKTCGFDFSGALEDISRIPEQSVLLLHACAHNPMGVDPRPEKWKEMVSVVKKKSLFAFFDMAYQGFASGDGDKDAWAVQHFIEQGINVCLCQSYAKNMGLYGERVGSFTVVCKDEEEAKRVESQLKILIRPLYSSPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISKRTQLISNLKKEGLFHNWQHITDQIGMFFYMIKDGRISVAGVTSGNVCYLTHAIHQVTK", "length": 379 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GL73-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC134481331", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLVSLPEQNLAMARILLLFLSAACLHTGNSSGYRRVNDFGVNQPAVLSGVQSGSIEIPFSFYFPWELANDRSMSIAWIWKYFHGEVIYNSTQPFLHEHFKGRLIMNWTQGQTSGVLRILNLKENDQARYFSRVFLRTTEGMKSWQSIPGTQLIIHALNTTMGSPSIIPSAVPTAGLEDKRGQRNPSLLNLGVMVGMVLAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GLF3-1", "protein_name": "Heat shock protein 90 alpha family class B member 1, pseudogene 13", "gene_name": "Hsp90ab1-ps13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESQTDPSKLDSGKELKIDIIPNPQERMLTLVDTGIGMTKADLINNLGTIAKSEDQTEYLEERRVKEVVEKHLQFIGYPITLYLEKEREKEISADEAEEEKREKEEEDKEDEEKPKIEDVGSDEEDESSKDKKKKTKTIKEKSIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNAWEDHLAMTSLSGYVSRMKETQKPIYYISGESKEQVANSAFVERVWKRGFEVVNMTEPIDDYCVQQLKEFNGKSLVSVTKEGLELPEDEEEKKKMEESQTKFENLCKLMKEILDKKVEKVTIPSRLVSSPCCIVTSTCGWTANMERIMKARALRDNSTMEYVMAKKHLDINPDHPMVETLRQKAEADTNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNCIYCMIKLGLGIDEDEVTAEELSAAVREEIPPWRVMRMPLAWKKWIKGSWEAPALCIVSLGLPQQP", "length": 518 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GM54-1", "protein_name": "MAGE domain-containing protein", "gene_name": "Mageb11l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPHDQKSKLHSRENSYQAGGGAQAYGDAEEIAEAAAEAAEESSAKSQSQPGAEYSRNHRAPPKAKPSAKLILSSSSSESDESSHEESEPSVQKDRPFLHQDLIERRVAILLQYLLHNYNLKQLTTKEEMLKVITKKYEKDFPEILRKASEKLEDAFAVEVREVSSSQPSYDLISKLKLPNNGRIRAGKGLPKTGFLMSILGIIFIQGNSASEEDIWKILKKKRIYPGKKHRVFGEPRKLMTQYLVKLKYLEYRQVAHSDPPRYEFLWGPQAHAETSKMKVLEYLAKINKTTPHAISALYQEALKDEKERAEVRDEDNTDTTDQSTEGSPEKSPTASTTPVDT", "length": 342 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8J8YII4-1", "protein_name": "Coiled-coil domain containing 188", "gene_name": "Ccdc188", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGPEPLGPCGHSHTQHPPAPVSNNHGGCLNQPCQGFVRWPCLVPLQSTQSLESSRPFPAPGTGSGGPRMRGEAPGMFLSSEGEIPRQRAREPAGARQEEVEVEWDWPLHPGHEQGPPRQTAPPTSGPRPCPCPTLPPRGRATASSRQAPTQLQGGTLESAQQSFLQLEQENHSLKRQNQDLREQLGALLGPGQQFLPLCSEHSSCTALAWVSGNTRSRTHAAAPPAVHSLGPDPGALPQSPESARTRLLEDRAPVQLLRQQELCPGKESFVRQSQSELQQIRLSFERKKMAITEVWDGVAEVHMALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKQQQMMEAAGLEAAAGCSAGLHSGLRVRGGPHTLRGAGATPAEPSQRLEAQGLTGSLLTPGGGRLPAFLEQKPSGPSKEARWLVLPQGLRGLTGPCLQHCGTWPLPEAAEKGGGRASPEGWACSWIYSHDTLCM", "length": 481 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9PVG7-1", "protein_name": "5-hydroxytryptamine receptor 7", "gene_name": "htr7a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLGDTNRTIIAKSHGETMKSLMAEERARETGASVETFNGIMISEVLVPRLFKIAHESGEVAVAAGSGSMDMKPSSSPILLEMMEVANGTRCAEQILSYGEVEKVLIGGVLTMLTLITICGNMLVVISVCFVKKLRQPSNYLIVSLALADLSVALAVMPFVSITDLIGGRWIFGKFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGWCMAKMVLSVWLLSASITLPPLFGWAQNVNDDRVCLISQDFGYTIYSTAVAFYIPMTVMLVMYYRIFRAAKLSAAKHTITGFPRVEQEEVEEDEVEEDGGDGAEEPTGVDCVTVAIKLQREVEECARLPRILRGVGRRCSDRRSISIFKREQKAAATLGIVVGAFTICWLPFFLLSTARPFICGTECSCIPLWVERTLLWLGYANSLINPFIYAFFNRDLRTTYRSLLSCRYRNINRRLSAAGMHEALRLVERPEVVVSG", "length": 479 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QGZ8-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pimr118", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLFTVLGVIALFLRERDTNNTEEEVQNDVPPVRNSDGQEIDDWCKEPSLLEPVSVHSEEPSLEEPVSAHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLKEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPSLDLSFFSAESSWSEDLSSSFLTVESSWSDDLSSGFLTAESGCGDDEPLFVDSAEPEKLKEDKETQIIEINSHCYAIEAQLGEGGCGAVFSATRLEDGLQVAVKLSDFEEEKRFISVDGFEDPLPLEIALHFLANKGPKVKEIIELLDWKVEADRYFMVLEQPIPCMSLHEFLLDCEGIIPENKLRTIMYQTTVAAQTCCQRGVLHRDIKLENLLINPDTLEVKLIDFGCGDLLTEDSFQYFRGTREYFPPEFSSTGRYHGEPATVWSLGVVLFLLVFYRFPEQSDLPRMNNRRLRIKGLSRDCCDFFHGCLQLDPKDRLELQNLSSHKWIRTRTRRNDENCPNLTDGSSHSNHPITSN", "length": 567 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0WZU8-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6B2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMVVNLILGWWLVAVSRAQKLPRPSLSLHPSQGASLGDNVTLRCHLPQPAAWVRLYRYQNPTYIEQKDNVQDMAEFSLTSIKQEDAVIYQCQYQGLAPAGTSQKSDPMELLVTDHRYPPPGISLSPKEHVEMGSNITIQCWNKDYGASFLLHKGGHSAPIQHQEPDYWGTATFTLFGVTPADSGTYRCSYRIGGCCLLFSPLGDNVTLEVIPRPAPPGVNGGPSRNLVAAVAGGCAAAIVIITVSFLLVALRRQMQRAERPGATPRSPEAVQFQVSPGDSEGLTYAQLQAVTPSTHPPTSSTTPEPPIIYAEVGTRGPR", "length": 321 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEA0-1", "protein_name": "C-type lectin like 8, MHCY region", "gene_name": "YLEC8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 276 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XED4-1", "protein_name": "C-type lectin like 18, MHCY region", "gene_name": "YLEC50", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYLSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKAHPQ", "length": 276 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEJ6-1", "protein_name": "Sulfotransferase", "gene_name": "LOC769841", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVCRAAAPNSHPSTMPVHYVTYKGIKFPPAYNSVHSLSFAHNEFLVRDDDVFNITYPKSGTVWMTEILSLIRSHGHPSWNQTVLNSDRMPWFSTRLGLEAALSYPSPRLLTCHLPRHIFPKSFSHSTAKVIYTLRDPRDVVVSYFYFCKMCNSYEDPVSFEQFLRDFLSGELPHGSWFEHVRGWMQMKDRENFFFITYEELKQDLQGSVRRLCHFLGQNLDDDAISSVVQNASFMAMRQNPMCSSILLPADIMDQTKGQFLRKGICGDWKNHFTVAQTETFNRIYLEKMRGLNVAFPWDRDQDPDLTEQ", "length": 309 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGU1-1", "protein_name": "C-type lectin domain-containing protein", "gene_name": "YLEC62", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTGSDPQLPEEDVHISVLESNTSTPAMGEGDQQETFLEHKAVTEPLGQSGEKPQWGSRCHGTGRRRSRVQLIAVHAAVGALILMLVVLVISTVCRRASIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCNAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 277 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGW1-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "NHLRC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPAVLWRLQRLSAAERLEARLSGAVRKEPGRGEARQSEKKPHSPHCPLRCSYACPGRTPMTSESGRKALSHLGRQQQCLNKMAELRARLEAFPAPECLFKTLNPFMGFLRLFFAPQPLGGEQALFRAAQCAEASPRIPAPQAWAGRSRGCHGNAARPASMGRKQAVGPRLVMAGALLTLLGLLWGSQMLKAFDYFSSWKGDGEQQMYKLDISWPKIPEYFSGQTFCVAVDSLHGLVYVGQRGDDIPKVLVFSVEGYFLYSWNDTVEMPHGIFVLNTATDSSVWITDVGSGKYGHTVKQYSPSGKLLQVLGTPGNAGSSLNPLQFDQPAEIFVEESGEMYIVDGDGGMNNRLLKLSQDYKEIWLSGENGTGIGQFKIPHSVTVDPFGRVWVADRDNRRIQVFDKVTGEWLGAWSSCFLEDGPYSVRFTGNYKYLIVAHLNINRLAILAAPPVGEIGDCAIVSTIQLADETKPHLVDVDVKSGAIYIAEIGAQQVQRFVPLS", "length": 502 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPN1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR2A13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMAVALILGWWLVAASRAQQLPRPSLSLHPSQGVSLGDNVTLRCHLPRPAAWVWLYLEGRWSYAKYIDKKQDTTEFSFLSASHDQAGTYLCQYQVSESEDVSVTSDPVKLVLTDRSFPPPHISLHPEERVGTGTNVTICCWNKDYGATFLLHKDGRSDPIQRLVPDDVGAVSFTLFGVTPADSGTYRCSYHPKNYPFLSSPLGDSVTLEVTPTPAPPGAELVSRGNLVVAVVRGCAAALIFGLGVFFVIDARSLWIRRDESLGGEGI", "length": 269 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPP6-1", "protein_name": "SUN domain-containing protein", "gene_name": "LOC776146", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDETGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XQE0-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6A8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPMAVNLILGWWLVAGSRAQQLPRPSLSLHPSRGVSLGNLVTLRCHLPRLAAWVWLYRGGGWSYKKGKKKEQDAAEFSFASTLREHAGRYRCQYRVYESAEVSVESDPVELVLTDVRYPPSSISLQPEQHVGTGTSVTIHCWNKDYGATFFLHKDGSSDPLQRQDSSGGGTATFTLFGVTPADSGTYRCSYRHWRYAFMSSPLGDSVMLEVTPTPAPPGAELVSRGNLVVAVVRGCAAVLIFALGVFFVIDARSLWIGRDESLGGKGI", "length": 269 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XTD2-1", "protein_name": "Coiled-coil domain containing 97", "gene_name": "CCDC97", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEDPKEAEGPTASKWIPIASNGNPTASKWIPIASNGDPTAPKWVPISSNGDPNWVPISSNRDPMASKWIPVSSDRDPTVTKENPPSSNETPAAEWDPKVPPEGRPVEEGDPKASPTEDPPAEPDPKASNCAPLSSHWAPEAAVWDPTSPHRDPTAEPQCSASPEQHRAAQRDPASPMEEDRYPATHGVRPATRADPAPYGDHPEAEEDPLPAAVEAMLAAVAASPVRVRSQQQGDPELTAAERRRDLRALFLRKPLVFLERFHGALQAEHLPCFAHLPPRYEVAFYCRQVRARRQQNPQTGLSRWPRRPGARTRLRNRRYAALRQLIAGGEYFSEEEMRAREPLLYEHYIGQYRDAETPPGTPPCPPHPGTPPGTTWAAALLRSVEEAAVQQRLQRQRLREGDSGEEDEDEDEAEEPHIPDAGELEVLREEFRSRMYQRFLDGEDRDFDYSQVDENPDMDNLDIESRDAEERYFDEEEPSAAPQLE", "length": 487 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Y889-1", "protein_name": "Transmembrane protein 65", "gene_name": "TMEM65", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWLGRAVLLLGRPGGPAAPSSSSRLCSLRGPPRCCCRRRLSSLRGGADGLLPARGAPPGRALGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLRELHRFESIAIAQDPIAARASCQQYGETWAHQEPSGACSSVHSQAYHQKEAVPSSNCPSTKYDRTHYLWPPLMAEAAGKPGRCPHCCAEGWSSEKLEVAPPSPGQLRHVFFHNALPFVGFGFLDNAIMIAAGTQIELSIGVVLGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQADMWQTRLSAHLGKAIGVTVGCILGMFPLLFFGDEEEKLEEKN", "length": 328 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YA34-1", "protein_name": "SWIM-type domain-containing protein", "gene_name": "LOC100859602", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAERGQLPPYAKRLCCRPGYGSGCRLGQQAGDTGPGSGTFCAGPSSAAAAAAAAAAATAASLVLLPLGKTQSPESLLDIAARKVAEKWPFQRVEEQFERIPEPVQRRIVYWSFPRSEREICMYSSFDTGAEGFTAPGSAAGNTASGGAVDAVADENRLPFRRGMALLDGGCVDNVLQVGFHLSGTVTEPAMQSEPETVFNVAISFDRCKITSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVLPTAQKLADEILSQNSEISQVHGAPDPTAGASIDDENCWHLDEEQVQEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITDQFMADPRLLLWRQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKTSWLKQLKKWNCVDVCPWEDGNHGNELPNLTNALPQGANANQDSSNRPHRTVFTRAIEACDLHWQDSHLLHIISSDLYTNYCYHDDTESSLFDSHGWPLWHEHVPTACARVDALRSHGYSREALRLAIAIVNTLRRQQQKQLEMFQARKKELLYRGITSITNLEGWVGHPLDPIGTLFSSLMEACRVDDDNFHGFSDFMENTSQHKSLEYQHLPAHKFLEEGESYLMLAVEVALIGLGQQRIMPDGLYAQEKVCRNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEVIHRESVPMHTFAKYLFTSLLPHDAELAYKITLRAMRLLVLESTAPSGDMSHPHHIASIVPNRYPRWFNLSHIESQQCELASTMLSAAKGDVQRLETVLQSIQKNIHSSSHIFKLAQDAFKIATLTDSLPDITLLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATELGVHALDSIMQNWFTLFTPTEATSIVATTVMSNSTIVRLHLDCLQQEKLAGSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYSQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVGLQGRRNSVKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYGEFIEFLSKARETFLMSHDGQIQFTQFINNLKQIYKGKKKLMMLVRERFG", "length": 1168 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YDY5-1", "protein_name": "SKA complex subunit 1", "gene_name": "SKA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAEGLEALSRHLAAKIGLIKRLLQLRGLGRREMLAEVGMEVAVLHGLLGRMEEEVNQRRQLAAALQEMRKRAEKEKWEAERLQLVKKAAKEAPLVNDAPLISDEEFESVPGYMRGRLTLAQTNAALRALHAAAASKYRLLRHPPKSLPSSSRALCHRFREEETKETQGLTFVVEADLKEFTQLKVDRTFHRIVGVLRHCRRLREVRGARLVRYVLP", "length": 217 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z0M2-1", "protein_name": "Tumor necrosis factor ligand superfamily member 10", "gene_name": "TNFSF10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPAGGPSPAHTCGAVLVAAVLLQSVCVAVTYIYFTNELKQFANADLVHSCERGHPLSPPPPPDVPQTAVTRPTKAEGGAAPVGASCSIGQSRRAQSDLRQRAANAASPQHGPPCAARSRARCSCPRCTAGPRVCRRTQQKLWDTYSRSGTACLTGEELGDLIQNLDVVESKDRVADPCWQVKWHLGKLIKKMMSRILQENMSAINGDRTQALPRRDEPPQGPTLRIAAHLTGSSKRSSASPHIDYLSYRGIGHKIHSWESSRRGHSFLYNVELWNGELVVPQTGFYYIYSQTYFRFRENEDEDSGLLERIKNPKQLVQYIYKLTNYPDPILLMKSARTSCWSKKAEYGLYSIYQGGVFQLKREDRIFVSVSNSDIVDMDKEASFFGAFMIS", "length": 392 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZCD9-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418390", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMSALLFTLLHYWKIWFCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEREEQQEQVEEEEQLERVEELEQEDQVEHVEQEEQEEREDQGEQVQQEEQVEEVEQEDEEEEYFHHSALTRYIARRAWEKMQGKATKCVLVEELMSDLLQTYTFVCSNSFYPVLQPAIGVGSAFEGWSPCEEDIVYRLLVPIKAPHGHVFHPELGEEGEVLARNSRIRVELVCMCTREQQLGDVLCFLHHSEEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRTWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKVLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRVLRDFKELKDRLFRLLLFGR", "length": 542 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZD85-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418382", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAIFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZE07-1", "protein_name": "LIM domain only 1", "gene_name": "LIMO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRDSNPMGWYGSHPVTAAWEAEARTTSLGQPGVRAAELP", "length": 158 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZGC1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "LOC124416945", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVAGSPALLLLLSLGLCFTGAQGQGNTMAVSFLNRSMKHPKEGQRLGLECHTYKTSWGVSWIRLDKDGNLHFIVYISKFSSTTFPGNKGASSQFEVSKQGSSYRLTVKNFRAQDQGIYFCIANINQVLHFSSGQRAFFPVTTTTAAPTTLRAVTLTATTQSSQVTMKDISQHSPDPGRSKENMPNFCCKLVMWVNLACACLLLLTAITITTTHCQRPSSP", "length": 220 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZPB4-1", "protein_name": "trypsin", "gene_name": "LOC107049069", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKFLVLVAFVGVAVAFPIRDEDDDKIVGGYSCARSAAPYQVSLNSGCHFCGGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSGYNANTLNNDTMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGFGCAQKGYPGVYTKVCNYVSWIKTTMSSN", "length": 248 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A1Z3-1", "protein_name": "Bridging integrator 2", "gene_name": "BIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSLYHPNAIPVPFPSHPCTTLMSSLTHHIIPVPSSCLPNVIPIPYHPHVISTLSLLHPHFIPMAFLNLPHAIPVPPLIHSCAVPMSYHPFPISFSFPSPSHPSIAPMQSPSYPYPTPVPPPFHLLPIPIPTPVPPPCHSCSIPIQPRCRLHAILVPFPPHCHPHPVPAPSPPHPSAIPMPSHFHPHPIPVPPHTISIPSPPQCHLHAIPVPSPTHPHPIPSHPRFPHPLWAQGHPHPRGSNLSPPIPPPPPNTFALQNEGNKLYKDLKAFVGAVKVMHESSRKVAETLQEIYSTEWDGHVELKAIADSNDLLWDDYEAKLGDQALRLMENYLAQFGDIKERIAKRGRKLVDYDSARHHLEALQNAKKKDEAKIAKAEEEFNRAQAVFEELNRELREELPVLYGSRIACYVTIFQNISNLRDIFYKEMSKLNRDLYEVMGKLDKQHSSKVFIIKGVPSKRRSLLISAPVSPPAAYPCPGKAPNWDPSSGAEQTPTSPRVGSDATEDVPNGLAAPGPAEPGAPMPGPPPASPTSVRSASESESECSEESREIDLSPKEMEVSVGSGCPEYPKTEGAAKGEVEGIAASMASMIVSEAIAAATGAAPGDSDGVGGGDSTDSEISPAEGAWGGPSPGGSEERVEGTDVSPEVGSDAGPCEHGTPEPPQQDVSCDPPQDPSESLTPL", "length": 682 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A7J1-1", "protein_name": "Mitochondrial transcription termination factor 4", "gene_name": "MTERF4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGRLLGLLRARAPRAVLPAPGPASRHRCGTAGPEEGEAAELLAMGFSQAQARRLRLLRPGLEPQRRAEAAAQLLLLGLSAEAALGLLERSPGLLRMETARLKERAEYLRRLGLEGERGGPLPRGVHAAPAEDGGGGAAAAGAVSVHGRAADRAAAELPRGAAGGAGPRAAPLPGAGRRAGRSGGVAGAARPALSSARLHAQYAYFRMGVRQKEMVKARLFRTPFAELRNRHVFLERRGLYRTPHKGQSQSGNPALRDVLRPTEGDFVAGVARASPDEYEVFKRLLAREEEEMEEEEEEDEEEEEEEEGSAALHAEGGDRDWHSSEPSPIAPCPPAPQ", "length": 338 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AKD9-1", "protein_name": "Borealin", "gene_name": "LOC121107214", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPARRKAAAGARGRKLSAFLKDFDREVRSRVEQLRTNGERLVKEMENLYDVELLRLPAALREMNWLEFFAKGGSQKVVEEAVTADLGITEINKLTAELIQTPLKIVTKEKSKQGIEATEEAAEVPLLPPAKKAKHDSQLLLEQAAASTNPRNGKVRTSTKKAPVSRSRRAPSARVKRVSKRSSKSSFITPATGRNLDLCARGGASIVTPRFDSRVFKTPGLRTPAVNERVYTISANGSPLADGNDVFITVPVGGGESIRLTASDLTKKNLLHLNPEARGIMKKLSVRLAQACSSAKTHR", "length": 300 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AMC7-1", "protein_name": "ODF3A protein", "gene_name": "LOC121107218", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPVTKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8W4F7J1-1", "protein_name": "40S ribosomal protein S26", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQPIHCTNCARCMPKDKAIEKFIIRNIVEAAAVGVISEVSVFAAYVLPKLYAKRHYCESCAIHSKVIRNRSREAQKVRTPPPRFRPTGAALRPPPKCM", "length": 98 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F8K9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTVTTFILLGLTDEPQLKTLVFIFLFLTYMLSVTGNIISLTSTDSHLKTAMYFFLQNFSFLEIAFTSACIPKYLYNIATGDKTITYNSCATQLFFTDLFAVTEFFLLATMSYDRYVAICKPLHYVTIVNHTVCRRLIFGSWLAGLLIIIPPLSLGLKLEFCDSNVIDHFVCDAAPLLKISCSETWLIEQMVIVCAVLTFIMTLMCVVLSYVHILKTILQFPSAQQRKKAFSTCSSHMIMVSISYGSCIFIYVKPSPKDSLAVNKGVTILTTSIAPMLNPFIYTLRNKQVKQAFNDAIKRIALFSKN", "length": 309 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9E2-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RLEFSSLSPAEVPLVAAAGGRGAFDMRCHECDTKNTFACDHIVTCPRGIRRCLTLSIRLSSREIYVYKGCTRNCTFIYADEQPPPGERKPPRSNSLYFVQCCNAITCNRGGPINLEKDITPPLILEEELGGTVRLGEATLFLSVASVLVSHALT", "length": 154 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBC5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLTHSFSFFSSSSSSSTYSSSYPLLPLLLQPQNQFRIWALKDYGQRNSTSLHDFILLGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSTAGQRKAINTCGSHLTVVSIFYGAIIYLYLQPGNSASKDQGKFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 331 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBS2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258626", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTAITTFILLGLTEDPQLQLLLFLFLFLTYILSVAGNLTIITLTLLDPHLKTPMYFFLQNFSLLEISFTTACIPRFLYSISTGDRTITYNTCFTQLFLTDLFVITEFFLLATMAYDRYVAICKPLHYMTIMSNKLCKTMVVCCWLAALLIILPPFSLCFHLEFCDSNLIDHFACDASPLLKISCSDTWLIEQMVIACAVLTFIITLVGVVLSYIYIIRTILKFPSAQQRKKAFSTCSSHMIVVSITYGSCIFIYINPSAKEEVNLNKSVSLLISPISPVLNPFIYTLRNKQVKQALHDSLKKTAFLLRK", "length": 312 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FCJ2-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSRKRNLPQCNPPKKQALSRSSRAELQFPVSRVDRYLREGRYAQRLSSHTPVFLAGVLEYLTANILELAAGEAHSSRKMRIAPEHVQRARSHNETLSSLFQASSVSRGAEEEAEEPLPEAGR", "length": 122 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FD42-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFIILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLNCCITQLFFIHSIFVFESGLLLVMAFDRYVAICYPLRYTTILTHPLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLLLDILLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVCIIILFYGPGIFTALTQRFGRHIPAHIHILLANVCILVPPMLNPIIYGIKTKAIQEQVALILFPKYR", "length": 314 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FH98-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VCHYGNYYSGLSCSCGYGCGYSRCGCNCDYDKCGYRCGYGGYVYGCCHLSCCGRYRPYGFY", "length": 61 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FHY5-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "DTGSCGAIVLTQTPLSLSVSPGEPASISCRSSQSLEEYGKNWLSWYQQKPGQSPRLLIYQATNRASWVPERFSGSGSGTDFTLKISRVEAEDAGVYYCQQYKEFPPTVIQPLTQTPLLGAQLHTWLCVVWGAEGQKL", "length": 137 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FIZ4-1", "protein_name": "Envelope glycoprotein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRPTLSRRHLPTRGGEPKRLRIPLSFASITWFLTLTITPQASSKRLVDSLTSPKPLSLTWLLTDSSTGITINSTQREAPLGTWWPELHVCLRLVIPGLNTMSTPPDILRAYGFYVCPGPPNNEEYCGNPRDFFCKKWSCVTSNDGYWKWPTSRQDRVTFSFVNSYTSYNQFNYGHGRWKDWQRQTQNRQISCSPSDLDYLKISFTEKGKRENIQKWINGMSWGVVYYRGSWGGEGSILTIRLRIETQMEPPVAVGPNKVLTEQGPPIQGQRPSPNPSDFNTTSG", "length": 284 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJ61-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSTKNKHLMKGSKKGPKKKVADPFSKKDWYDGKAPAMLTKKRNIRKTLVTGTQRTKITSDGLKGHVFSSEPCQSAE", "length": 77 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJT7-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKNPEVRKIHSAVFLITYLSTILGNLLIVVTMVTSQSLRSPMYFFLTSLSLMYVTYSSVIAPKMIVDSFSETTAISLEGCMAQLFAEHFFGGVGIILIIVMAYDHYVVCCLLLGGAWVGGSIHATIQLLFICQTPFCGPNVIDCFMCDLFTLLKLACMDTHLLGILVILNSGVMCMAIILILITSYVVILCSLKSYSFEGQHKALSTCGSHLIVVVLFFVPCIFLYVMPVATYPIDKAMAVSFTIVAPMLNPLTCTLRNAEVNNAMRKLWMKQNTLCYH", "length": 279 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKQ6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVQDQDEKKNPMWELGIHKLCLNICEGESGNRLTRAAEVLKQLTGQSPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEIFERHLRVREYKVQEHISLGTKYDPSIGIYSLDFYVVLGRPGFSFADKKHRTGCIGAKHGISKEDAMSWFQQKYDEIILPGK", "length": 163 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKY3-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGKFVKPGKVVLVLAGRYSGRKAVIVKNTDDGTSDQPYSHALVAGIDRYPRKVTAAMGKKKIAKSSKIQSFVKYSVDIPLHKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKCFFQKLRF", "length": 125 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FLM5-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGHQQLYWSHLRKFGQGSRSCCVCSNWHGLIRKYSLDMCHQRFCQHMKDPGFIRLD", "length": 56 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FNC8-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLTNYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIALISASYVFILHSVIRMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 301 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP10-1", "protein_name": "Ribosomal protein L19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSVLRLQKRLASSVLRCGKKKVWLDPDETREIANAKSRQQIWKLIKDGLSIQKPGTVHSRARCQKNTLRKGTASAGMPKKSVPERDGNVFKNKRILMEHTHQLKADKARKKLLADQPEARRSKTKEARKRRQERLQAKKEERNRTEVETKFCRLI", "length": 155 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP36-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQDTASIRTRKFRTNQLLPGKQRVIRVLHPGKATVPKTEIWGKLAKMNKRTPDVIFVFGFRTHFGGGKTTGFGMSHDSLDDYTKTNEPKHKRARHGLYEKSKTSRKQRKERKNRMKKVGGTAKANAGAGQKGGV", "length": 134 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FQE1-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQLFFIHSIFIFESGLLLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDVLLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVSVIILFYGPGFFTTLTQRFGRHIPAHIHILLANVCVLVPPMLNPIIYGIKTKAIREQVAHLLFPKQK", "length": 314 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A9J7F7T0-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "LOC100757015", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDYVMQFVEPSGQFVKDSIWLVKRCTKLDRKEFQKVAMSTAMVFAIMGFTGFVKLIHIPVNNIIVGG", "length": 67 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GY23-1", "protein_name": "Tetratricopeptide repeat protein 16 isoform X2", "gene_name": "Ttc16", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTDSSTEESVNVQTQKIPKLQVPETRETTLQRIFGTSQVFYSVSGVVKPRLTESTVPFRVREYYHQGHHCLEQEDWEMAVLYFSRALHLNPDQVEFYIFRAEAFIQLCDFSSALQNLRRAYSYEPENSKYLERLAFVLYLQGQCLYELCDFQEALYVFLQASDLQPQNPSFSYRCMACLLALNRHQDCLSLVTREVKQGRATADVYILRARIYNFFQKPKLCYQDLRSALLFNPKHPQAKGLLQVMVDQAKKSLQDASILAVQGKLHRALKRISCAIENNPLDPNLFLFRGTLHRRLQQFDPAVEDFLKAMDMVTDSQDNLVQKTQRQLLLTYNDFAVHCYTQGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALELCPKDEGANLRMGVLQEKMGLCEQTRRQFQKAEDHFSAAIKYNPVNAQYYLHRAKNRQLLQNIVGACQDIATVLLLNPKYPKMAPLMAKLFPGMSVEEVLNSHVAQLAKLQLRRMIESGPKASHPQSIVAKRLIERQKAQALMESWNWEQLFTRNPEEEVAPSESLQGKTLREKIEFKREVVEEKKVKILRKVTSLSDSYVDQTSSGSEFSILSPSTLETEVSTMEYKSTSNTAASSAERLLPQYLVTTKYKESLGLSMAPNVTQVSEDLHKSLTENIPDDGPRHHSSKAEATQRPKPRKTEPSQSLGKQRPSQRPSITEATKGPKPRKNRPALSPRQRLRRAKAVQAQNWKPRTNSNSQKTSSLLSNIAVIISSSNEAQDQSPVPSKADDISSYNDSTATSSTNTDSLRLSIHLSKPKYSKDQSPSHNKEEVSPTSNNYAAP", "length": 835 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GZF8-1", "protein_name": "Protein EURL homolog isoform X2", "gene_name": "C4H21orf91", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIIKRKATVIHHKGTMNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNLEGVPKSNLLHTRSLRGHKDCFEKYHLIANQDCSRSKLSKSTYEGVKTLLTKKINWIVQYAQNKDMDLDSECSKNTRHHLFNFRHKPDKKLLPQFDSQVPKYSVKGIAGSTGGLSSYTQRILEQRENTDFGLAILQDSDALWPHKHNQAQKKEETSSGPENVQTQNPRYSREELNSMTLDEVEQLNTKLQQQIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNYSKLPCLQVGRAGPRSHLPINN", "length": 304 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7JMJ4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100771730", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDFVNISLVTEFFLVGLTDQPELQMPLFFLFLAVYLITALGNLCLIILTVLNSNLHTPMYFFLFNLSFIDICYCSVFTPQMLMNFILRENIISYMECMAQVFFFCFFVVSECYVLTSMAYDRYMAIYNPLLYNVVMSPNLCLNLMFGSYFIGFSNAVAHTVCMLRLTFCDTNIINHYFCDIPPLLQLSCTSTYVNKLVIFVFASINIIVPTSTILVSYGFILSSIFHISSSEGRSKAFSTCSSHIIAVSLFFGSGALVYFKPSSAVYMNEGKISSVFYTNVVPMLNPLIYSLRNKDIKVALMKSLNSRNL", "length": 310 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AA74KSW7-1", "protein_name": "Predicted gene 3002", "gene_name": "Gm3002", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNSSKLGVWAAGVPPSSPTLLFRRWVMKVESLISQPMTSGKNELQDHLIFISEKALHKRLFQKENGDEGVTRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSPAESRTWHRPGHDLPQREVLEEEH", "length": 280 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9RU54-1", "protein_name": "Small integral membrane protein 17", "gene_name": "SMIM17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSLRPEQVRGLLEPERAKTLLPRENKAWEKRAAFAKDWVAVEVGASGCGSDEKDLPSPKTLVPQEWSSVEEDDESEDSQPHWAAALPTSPSCPSQDTGTGSGADLCLQCSSPRTPPWLPWAFSHTIESALPTPPRAWLWSLL", "length": 143 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AAA9RY85-1", "protein_name": "Core Histone H2A/H2B/H3 domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNMPEPAKSAPAPKKGSKKAVTKAQKKDSKKRKRSRKESYSVYVYKVLKQVHPDTGISSKALGIMNSFLNDIFERITGKTSRLVHYNKRSTITSREIQTTVRLLLPGELAKHAESEGTKAVTSIPALSKYNMPSRC", "length": 136 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0KVZ2-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EFGFRSVASAGWGAACPLGLRHVISCGGRAGLEQKARALSSSSTGLFPEGQQRAPPDFSDDICTDKKKNQERGINKWPTTTRNKNYFFVDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 192 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0L002-1", "protein_name": "Oocyte specific homeobox 2 like 1", "gene_name": "Obox2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ILQSVQNTDMIEGPSFLPKFQMSSYTPMDTSSQLPQEPSWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNWQESQGSSRESSIQMQPGPVMDPGFPTLRSPSGHPSHQRPSRPSSRSGFHVPIEPMALSDKHGGKQTGPVAPRKCRKERTQYSAKQKSVLQEHFAECQYPDKKLCLELATLFGVTENEIKVWFKNNRAKCKQKNVPEALPETNGGPEAVSWSTDFPGSIAVVGCDQGEPMATAILDVDSTPKLNCSQESSLDGNWTYDGAMCCLPEDVLDGNDPVTAGDSGESAPVEAQSDLAAAGAPVAMAVDTQNPEECEDLPLLDEGVWQWMLEDFHQLEDWFTKNYIESPSSASHPLD", "length": 362 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LHI6-1", "protein_name": "CD27 antigen", "gene_name": "Cd27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAWPPLYWLCMLGTLVGLLATPAPNNCPDRHYWIGAGLCCQMCGPGTFLVKHCDQDRAAAQCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECTCSKGWQCRDQECTECDPPLNPALTSQPSEAPSPQLPPPTHLPYATEKPSWPPQRQLPDSTVYSRLPSQRPLCSSDCIRIFVTFSSMLLVFVLGGILFFHQRRNHGPNEDSQAVPEELCPYSCPREEEGSVIPIQEDYRKPEPASYP", "length": 251 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LYA6-1", "protein_name": "Prostate and testis expressed 2", "gene_name": "Pate2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSCLTSELQGSACLCLPSTGSYKHILQHLDLGTMCYKCKKYHLGLCYGLMRSCTLKHRQSCAAENFYILTNRGQSMYHYSRLSCMTNCEDINFLSFERRTELICCKHSSYCNLPMGL", "length": 118 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0M6C3-1", "protein_name": "Prohibitin", "gene_name": "AABR07037878.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNKNIKNSISISVCVGGVGGVRARAHAHAHTSPHACTRVIHAFVMLEVGPRDFVHIKKAFRGIDVKKPVIFDCRSQPRNVPVVTGSKDLQNVNITLRILFRPVTSQLPRIYTSIGLDYAERVLPSITSEILKSVVARFNAEELITQRELVSKQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVEKAEHQKAAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSSSQNITYLPVGPSSVGPSVRQSMFLRLPQ", "length": 286 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58FXL6-1", "protein_name": "Cytochrome P450 2X10.2 isoform X2", "gene_name": "cyp2x10.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDLRGIYSYMLSTVNSLVRDSSLTNFKKEFCVHAYLLSVCIQYQSSVWSSSRSVTMLTALVLLCLGAFLLYLQLRIRRPKNFPPGPAPVPIFGNLLQLNRISPLKDFDKFAQHYGSIYGIYIGSQPAVVLTGQKMIKEALITQAAEFSGRSNNMMFSHVTGGKGVIMADYGESWREHRRFALTTLRNFGLGKKSMEQRILEEVKHICLLLEESAGKSIDPQHLYHQAASNIIASVIFGSRFNYKDAYFQTLITSVEDLTKITIGPWAMLYEIAPVLRIFPLPFQKAFQYFEQITKHVLKVVEEHKTSRVAGEPRDLIDCYLEEMENKSDHRTSFDESQMVTLLFDLFIAGTETTSNTLRTLTLYLMTYTHIQEQCQREIDEVLGARDHVTYEDRNAMHFVQAVIHEGQRVADIAPLSMFHSAKTDTQLRGYSIPKGTIIIPYLSSSLREEGQWKFPHEFNPQNFLNEKGEFVKNDAFMPFSAGPRVCLGENLARMELFLILVTVLRRFRLVWPKDAGEPDFTYIYGGTQSVKPYRVIVEPRMHGEACKFVD", "length": 552 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J797-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "si:dkey-233e3.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANAKQLLKNSLDELVEAELKEFQWYLINDHRDISKAEMEKADRLKTVDKMVSCFGPKGAVKTTVDILRKINQNELAEELENKHKQGNCMSARAEGAVLETCKSPPFDYTNTSRELKKKLKEDYEKILVGNSQTGHKKYLEDIYTDLYVVENETGGRERQHEVIQMESKHNQQDRPLKCNDMFKVQPDTGRKHRRILTLGIAGVGKTVSVNKFILDWAEGKDNQEIVFIFPLPFRRLNLIKEEKYSLIGLLNKYFFSISGGLSSLPEKQGKVMFIFDGLDEYRFKLNFKKDDGFTDVNKEMTVSEIITNLLKRHLVPSSLMWITSRPAASSLIPRDLIDQVTEVRGFIDEQKEHYFIKNSSPEVARNIIGHIKKSRSLYIMCHIPVFCLISLTVLQPLLGQESNEKTPTTLTGMYINFLLSQKQQMKEKYRNDTESEANACSFDEIVLKLGKLAFKQLQKGQLIFYKTDLEKCGLDVRQGSVFSGLCTRMFQEENHYSGEQVYSFVHLSVQEFIAALYVFFTYKNKKANLFLDSWKKELKWKLSEKPLFKLHTAAVKKTLQSKNGHLDLFLRFLMGLSLESNQSDMKELLPWLKLKTGMIKDTTDYIKKKIEEENSAERTINLFHCLNELNDDFVEELQKSLCSGNLTAQDLSSAQWSGLVFVLLMSEETQEKFELQKYRRSDEALMRLIPVVKNTTRALLQCCNLTAQSCESLSSALQSSNCVLRELDLSNNDLQDSGVNLLSNGLKSPKCKLEILRLSGCMVTEEGCGFLSSALTSNPSHLRELDLSYNHPGDSGLKLLSQKLEDPNYTLNKLNLDHGGEKWFTAGLHKYACFLTLAPNTAHIELRLSEENRRVTRVGERQQYPDHPDRFDHHAHVLCRESVCGRCYWEIEMNAGDRVDIAVSYKSIKRKGRGYECVLGQNAQSWALICYVNRVAFRHNMIETRLPVKLMSRRIGVFVDHSAGTLIFHNIYRDSMSLIHSVQTTFTEPLYPGFWVEYGSSVKLC", "length": 1006 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JHM1-1", "protein_name": "Phoenix isoform X1", "gene_name": "pho", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRSKGDTSVGEVMEADPRAELIFETPPPDVVSSINACFEEIDSALKIRRDPSVHSPPSDSDSESLFITQSVTKVVHTKRRLRSSKKPDSISDDSGYVRERRLSENQQTECEEESRSLRSSRRKRSKWEMYASARKATFPFLMKSLKTQHLPIRKHQILENSEVGGFFKCIKKIKTGSVKMGKVISSHLFQSPISDSSEEEDQNSEHDVISVDKALFVPGYKRGINFKWLPDFIRERRTLENYLSNGVDKEKKTEQIIEYRQRNQHPQRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDLEIAECAENSHEGHKVVIEETQRQTVEEASAHLEHEDDLNCKVVEYRKRKRHPKRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDIESVECAENSHEDHNVVIEETQRQTVEEASAHLEHEDDLNCKNQPDVDQPNESNFIGPPQEGDISTQSDTQQTDSDIGSVDLFSPLNSPKRDDQIPNTTSITANVEENDQDSDVTQIESEGQHVSTFTQETQKCFANEEYDSDETHIDTESLSRFKPRTPNKQFTSTKHPEIPQFRVQSPKPPSRQAETVNVQLSPKHLPLSNVPLSEVPISPCESAIVGRQKTMVETETDSPMFKITGPSFLKRKRKRTKDKNAAADFKQHDTNGDVGQMVSCPGDDITGLKAVPIENIEACGVEHEMAIGEQTEELGLKSKELLEESVLSTVNSVSTKSKREKMKKYKVKECEAVENQLVETSKKAKKKKKDKERIATSYPEENNLTNIQSNEGFDSAELRVKEVNQSSQSLNTDQPTCVQTSEEITGETELKKKTTRHETDDPLYESVGLDVTLASQFDVGLRIDEQQEGLVTEEAERDERLQGKAMKVAKGKKKIQDTSFQVDHDIGLDKQRSDSGAKPANLDLDGLESLTIKKKKKKKKKHKLKEKTDPKLDFDFDHNVQFFQTDRLQTTDSVLLDSTHTNKQKKKKLKCQNDTDQSSDLKQLHVVGSKLQTIDLPKTDKHMERTGVSSSDALLEHMDDRTLGMRENNTIQTDQIEHLQTSEEVTRCSSPRLSSDKKREKTSVHPNLDASSVFQFDGFKANEDQAITQNTTKEKQISSEQLENNLVGPPSQVENIANVNSSVLLDHTHMNTLREGQLKEQTYKELALAFGLKQLCIVVNKLKTTDLPKTNKNMEGTGVGSSDELLKHTDDRTLETRENNTIQTNQIEHLQTSEKVERHSSPRVTRLSFAKKWMKTSVDSNLDASSGSQFDGLNSMAKEDWTFSQNMDLPLKRTKNKQKDKERTGVSSDALLKRMDDRPPEMRKKNTIQTNQIEYLQTSEKVTRRSSPRLTRLSLAKKMEKTSVDPNLDASSGSQFDGLKEASKEDRTAPRNSIEEKQSDAISSEGLENNPAHLVSTNKSDNTSPSSQVDNIVGLQSDANSVLLDHTHTDKQKKKKIKHKLIEQTEKELTSEVEDNVQPFQFIELRAMDLPSKRITNKKLKDRKRTGVSSSDAVLKHIDDGPSDMRENNSIQTDKIEHLQTSEEMTRCPSPRLSSDKKRKKKYVDTNLDASSGFQFNWSNGMAKEYSKNSTNISSLDNMHTSKQKKKKKQKLKEQKNVESVGDNVYSLEPDQFSGLQITEIKTKKKDKKRTKQANVEENDLKGILSNKAFKASQTYQLEHIQTSEEIKGRSPNAASKSAKKKKKKKNETKNPQYESVNLDLSLAKEDRTTTQNHTEETQGDGNAVEHLEMNPAGLIKVSKKKKKRENAGIVQLDNIIGLQSGSSTDVKSSVLSDSTDTNKHKKKKRKTLKEQENVEAEGDDVQSVEPDPFSGLQITEMTTKKKRKHKRCEEQRCLRGVSSHEAFKAPPTNLLQHIQTSEEISQCQSPNVAALENGGSPYQLENITEMQPGNSIDINSSEILYSTCTHKQKWKKLKQQENVEADANDVHSAELNLFSELKISEPTTKKKKHKKCVEKCALKDISSNEGIKAPQTSQLEHVQTSKEITQCQSPNAATLKSEKKKKQKRDETEVPQYLDASSVSQFDDVTRLKKQAKVDRTTTQNSSEETQNDDISSKQLEMNPAHLIKVSKRKKKREKAGSPYKVDKIVGLQSGNFTDVNFSQLSDSKRTDKQKKKKKIKLKEQENAEADVDDVHSVELDQFSGLQITKPTTKKKRKHKRCVEESGLRDISSNEAYKAPQTNQLEHIQTSEEITPFQAPNVAALKSAKKKKKKRDKTVEPQCLDASSVSQFDDVKTRAKEDQTLTPNSSKETQGDDSAVECLETNPAGLMKVSKKKKKRENAASPYKVDNIVGLESGNSADVSSSVPSDSTDTNKHKKKKRKKLKKQEIVEADLQTSEEIIQCQSPNVATLKSVKKKKDETKEHQRLDVSSVSQFDDVSRLKKRAKEDRTTIQNSSEETQSADISSEQLEINPAHLIKVSKRKKKRENGRSPSQVGNIVGLQSGNFTDISSSVLSDSTRTDKQKSKQKKKLKEQENVEADANDFHSAEPDQFSGLQITEMTTKKKKKHKRCVEESGLRDISSNYAFKAPQTNQLEHVQTSEEITQCQSPNVAALKSEKKKKNKRDKTDKPQYLDESSVSQFDDVKKRAKADRTTTHNSSEETQKDNISSECLELNPAHLMKISKRKRENKSLGLLSENTADLNSSSLLDGTDTDKHKKKKRKKLEGQENVEADVDDVHSAEPDQFSELQIPEMTTKKKKKHKRCVEESGLKDISSNEALKALQTNQLEHIETSEEMTIKTVKKEKKKRDATEEPHYKSVDLDVSPTESTTEAKLNPTKHKKKRKQSFSGSHDAHEAPERKRKKDRN", "length": 2809 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MGZ5-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1-B", "gene_name": "hs6st1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNDTERNMVERTSKFLLIVVGSVFFMLILYQYVAPGVINFGSPHGYLLGEEDMTIFPTPDPHYVKKYYFPIKDLERKIDFEIKGEDVIVFLHIQKTGGTTFGRHLVQNVRLELPCDCRPGQKKCTCYRPNRKETWLFSRFSTGWSCGLHADWTELTNCVPGVLNKRESKSKKMRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQQFMDCPYNLANNRQVRMLADLSLVGCYNLSTVPEKRRSQLLLESAKKNLRDMAFYGLTEFQRKTQYLFERTFHLKFIRPFMQYNSTRAAGVDLDNDTIQRIEELNDLDMKLYDYAKDLFQQRYQYKHMLDRREQRLLRGHASFHSPFREDGAGGEGTARLPTEDYMNHIINGW", "length": 407 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1EC97-1", "protein_name": "Dual specificity phosphatase 14", "gene_name": "Dusp14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSRGHSTLPRTLMAPRMISEGDIGGIAQITSSLFLGRASVASNRHLLQARGITCVVNATIEIPNFNWPQFEYVKVPLADIPHAPIRLYFDTVADKIHSVSKKHGATLVHCAAGVSRSATLCIAYLMKFHNLCLLEAYNWVKARRPVIRPNLGFWRQLIDYESQLFGKSSVKMVQTPYGIIPDVYEKESRHLMPYWGI", "length": 198 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1XQX2-1", "protein_name": "Neurexin-1b", "gene_name": "nrxn1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMILHLGAHLLFIGLIVCKANAGSSLRFTGSDEQWVAFPMWNACCESEMSFSVKTTHLNGLLVYFDDEGFCDFLELHVHVGKLRLCFSIFCAESTCVLSDVAINDNRWHSVSIMRNFRNTTLIVDDEVKWEEVKSKRRDMTVFSHLFLGGIPSELRSVSLQLTSKTVKDHTSFTGWIMDVKVNDSEPAIISSAGVHEDLCGSENTCLNGGVCSVVEDKPTCDCSQTGYQGKDCSEGLAHLMMLDRGMEEYVATFRGSEYFCYDLSLNPIQSSSDEITLSFRTLQRNGLMLHTGKIADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVGYAMVTISVDGILTTTGYTQEEYTMLGSDDFLYVGGSPSTADLPGSPVSNNFMGCLREVVYKNNDAELELSRLAYQGDPKLQIHGVVAFKCESVATLDAITFETPESFLTLPKWNAKKSGSISFDFRTTEPNGLLLFSCGRAKQHNKEAKSPVTLKVDFFAIEMLDGLLYLLLDMGSGTTKTLALNKKVNDGEWYHVDFQRDGKSGTISINSVRTPYLCPGDSELLDLDDPLYLGGVPESSSGTVFPTGAWSALLNYGYVGCVRDLFIDGRSVDVRRAAELQRAAGVKPSCGKEPSGKCVSEPCLNRGVCREGWSRYICDCTGTGFLGHSCERDATILSFDGSKFLKVQFSAAMHTEAEDVSLRFRSLRAYGVLMASTSTHTTDTLRLELEAGRVRLTVNLDCNRINCTTSKGPESLFAGQNLNDDEWHTVRVIRRGKSLKLSVDDLPTVDGEIPGDHTQLEFHNIETGIITGKRQLPTMPSNFIGHLQSLMFNGKPYIDLCKNGDIDYCQTNAPIGFKSIIADPVTFKSCSSYVTLPSLQAYYYMYLFFQFKTTSADGLILYNSGDGNDFIAVELVKGYLHYISDLGNGAHLIKGNSIKPLNDNHWHNVMISRDPNNLHTVRIDTKTTSQTTLGAKNLDLKGDLFVGGVPEQMYKDLPKLVHAKEGFQGCLASVDLNGRLPDLMTEALVCIGQIERGCEGPSSSCEEDSCANQGVCLQQWENFTCDCSMTTYAGPLCADPGSTYVFGRQGGVITYSWPPHDRPSTRVDRLALGFITLMEDATLVRVDSSAGLGDYLKLHIVKGNVVAVFNVGTYDINIEENGKLVNDGNYHIVRLTRSGGNATLQVDDLPVIERFPPGHIDSHRLGTGRLPYRRLVEESLPKNGRQLTIFNSQMTIRIGGWQKQQVSGFQGQMSGFYYNGLKVFSMAADGDPNVRMEGSVRLVGELQSSSTPHGGATVYQSSVTEISSTTSNTITITYSTPADEQQTTDELLVASAECPSDDEDIDPCEPSSGTLCCFVPPAGPTGPAISSFPGPAEVFRESNGTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDESRNYICNSNGAALKEKNTADDDSGSKSKKNKNKEYYV", "length": 1470 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2A7I1-1", "protein_name": "Zinc finger protein 978", "gene_name": "Zfp978", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFAPHQESGRRTTKRMSASLENTAQCLLTFKDVFLDFSSEEWECLNFAQRTLYMDVMLENYNNLLFVENHCICGNYEKEKVVEQDTQHIFNEHGHIQEKSFKCNESSNIIHESSESTPHKTNHRDATLQSSNLKRHKTGTTKQVCTYKDCVNCLKGSSIISLNQGTHVEKKEHNRNKNLDEVLVSKHKPIVRQNNSEMNTYTCGEFDKCFTQSDNLQSQQRIYPGKKSYKYSESDKCFTQPSHLSIHHTIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTQTSHLSIHRRIH", "length": 335 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A8N2-1", "protein_name": "PRAME like 25", "gene_name": "Pramel25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A9Q9-1", "protein_name": "MAGE family member B5B", "gene_name": "Mageb5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRGQKNKHHRNRLKNKKHNQEKVHPQKDESQEKGHHKRDDFQDHKEARDNAAVEEKSSCSSPSVPGETLEKPPASKTSSDAGWLSCVSSPATVCGDELEFDDGTYFHCGGNSLYSEYRTCQENPCKHCLDMYVNLVEQYVLYKFKMKKLIDRNKLIDLIEPKYRYNFSDIFKRAFENIEIVFAASVIEIDSTNHVYDLVSKLKLPNKGRVCPGRGLPKTGLLMTILAMIFMNGTSASEEDIWKFLNYMQVYPGRKHFIYREPRKLITQDFVKLKYLEYKQISLSDPPCYRFQWGPKAYTETTKMKVLEFMAKGSGVEPSTFSVQYTEALREENQKTKIRKWYPILAQKHCPGHSHQHVQKVMKPQ", "length": 366 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ADW8-1", "protein_name": "Predicted gene 15128", "gene_name": "Gm15128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANREDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVQSERSHVYSGRTNNYTDRPQHDLSNRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESFDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW6-1", "protein_name": "PRAME like 22", "gene_name": "Pramel22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRLLREEALAISSLKDLPNMLFPVLFEEAFIFGYTKILKAMIPEWPFPYLSIAVLIDNCNLESLKAVLEGLDILLAQKVHSSRCKLKEISWRDTNHGLDGIRPGSHEVEGLSEFMEQKHPNCVEKKELKVTTELSVMNGRLNESDTYLLEWTQQRKDSIHLFCRKLVIQSLTKATVIEIFKIVNADCIPELELCSLCLEDLAFLNPYLRQMDNLLELTLDHITDSLSIGDSEMLEERMITLVSQLPTFPCLQKLCINDVYFIYGNLKEFLGCLKKPLVSFCISNCELSQSDLDYLPYCLNIFELKCLYIINIHLQYLCLEPLGFLLESVRHTLGCLALKSCNMGEPHFKSLLPALSQCFHLTDVNFQENELSLLSLKQLLQHTSKLTQLSYEMYPAPHECYDDRGVILSHRIEQFCPEVLDMLRAKRQPKDINFVTTQCSKCGIYYVYDLETQRCRFLK", "length": 460 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW7-1", "protein_name": "PRAME like 23", "gene_name": "Pramel23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVNSPPTLMKLASQRLLREEALAISALKDLPNMLFPVMFEEAFINGHTKILKAMIPLWPFPYFSLGMMIKNLTLDTLKAVLQEIDILISKVVHSSRCKLKEIKWKNTDYGLQGIWPGSHEFDGLSEFMEQKQPDCGVKKELKVITHLKLMEGSLDECATYLLQWAQQRKDSIHLCCRKLKIQGSINATVIEIFKIVHADCIQELELCCLCLEDLDFLNPYLKQINNLIRLKLDEIKGTVSMGESRNIDEEKVITLISQLPTLQHLEKLCINDVSFIEGNLKECLRCLKKTLEILCITNCYLLQSDLDYLPYCLNILELKCLDFSNIPLSHLFLEHLRFLFERVRHTLECPILKSCEMGESQFNSLLPAISQCCQLTEVNFYDNELSLIFLKKFLHHTAKLSQLTYELYPAPLECYDNRDIILSHRLENFCPELLNILRAKKTAQGGHLCYNPML", "length": 455 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AHC7-1", "protein_name": "SSX member B14", "gene_name": "Ssxb14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVISCEKIPMEVLHKPKNICKAFQDISTYFSGEEWGKLTEWQKSAYMYMKRNYTRMTGVTVNQPVFMSGKEQAKQSLVKGIEVHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 168 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AK42-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "Cwc22rt5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSVAHMKQSSGHNRRETHSSYCRSSSPEDRYTEQERFPRDRDYSDYSRSDYERSRRGYSYDDSMESRSRDREKRRERERDADHRKRPWKSPSPDRSPARGIRQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLAQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEEEEEEEEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQRTYENFFGLLAGRFCMLEKEYMESFESIFKEQYDTIHRLETNKLRNVAKVFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKTALTSSSSESSSASDSSDSDSDSSESSSESSSEASDSSSSSSTQSSTSAKGTRKKRQGKARGEEVDKLARGHQALERRQGGREDQRHQEGRTERARSERHRAQNSRDADWRDSLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKKQREKRFFL", "length": 830 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE0-1", "protein_name": "Reproductive homeobox 2F", "gene_name": "Rhox2f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYLLDVGPEEDEENANGVKTLMVLLAGDGRNEGESGRGLPGSGASAAEGYRAGEISAGGPAAQVADLMDDSNQEDLGATACDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHLWRHSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE1-1", "protein_name": "Reproductive homeobox 3F", "gene_name": "Rhox3f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSMSNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDNTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEALRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYRWYKRL", "length": 215 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ASJ1-1", "protein_name": "PRAME like 14", "gene_name": "Pramel14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLEAPPTLLQLAAQCTVRKEVLTISVLQNLPMKLFPPLFKEADILRKAKMIKLLVEYWPYPSLLVGLLIDKTNLETFQAILEGVGTWLKRKYRPRMGKLQVVDLRNGHHDFWDMLAGREGGDQLVETMPEKQEVEGHSRRQRLRVFSDLSFKSSRHEDKQQTHLLQWAKDREGFLHLCCEKLEIGALGVSKVKKVLKLLQPEFIKELELNTVGNLSKLTKLVPCISKMRNLQKLMLVRIFGRHTYTPLEERNVTKILSLFPKLSYLQHLTIDDVYFLRDHMNELFRYLEAPLLSLTITLCQISQSDLESFSQHWNYGQLKHLCLKGVSLSTLNVTPLKFFLESVADTLQTLELEDCRMKDSHLRILLPALTKCTRLTSINFYDNNISRDVLQDLLHRTANMSQLTMELYPAPVEVYNEWSYVQVERFSQLCAELMNTLITVRRPKSVCFGTYSCYDCDTHCIYGNQTTFCECLE", "length": 475 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ATW2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIHNVTEFFFLGLSSNQEVQRVCFVIFLFLYMAIVLGNLLMVVIVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLIVDLLAEKKSISVWGCMAQLFFMHFFGGIEMFLLMMMAYDRYVAICKPLHYTSIMNRQVCTVLVGMAWMGGFVHSLAQVLLIFRLPFCGPNIIDHYFCDVLPVLKLVCSDTFLIGLLIVVNGGTLTVISFVVLLSSYAVILFHLRTQSAEGRRKALSTCGSHVTVVVIFFAPCVFIYLRPTATLPIDKMVTVFYTVITPLLNPIIYSLRNAEVKKVIKILCTRATKVDKK", "length": 309 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWL9-1", "protein_name": "Reproductive homeobox 2C", "gene_name": "Rhox2c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSVNYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGASAAEGYRAGELSAGGLAAPVADLMDNSNQEDLGATGCDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHGWQQSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWM0-1", "protein_name": "Reproductive homeobox 3C", "gene_name": "Rhox3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BED8-1", "protein_name": "Predicted gene, 58953", "gene_name": "Samt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQFVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEE3-1", "protein_name": "Spermatogenesis associated multipass transmembrane protein 1d", "gene_name": "Samt1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQLVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI6-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 10", "gene_name": "Msantd5f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLAWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI8-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 8", "gene_name": "Msantd5f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLVWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFR3-1", "protein_name": "Histone H2A", "gene_name": "H2al1j", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTHSQRGEFPLSLVDRFLPEGNHSGRLSSSAPVILDSVLEYLSSNILELAGEVAYTTGRKRIAPEDVGLVVQNNEQLCQLFKPGATSVFDPPEPDDN", "length": 109 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFZ7-1", "protein_name": "BTB domain containing 35, family member 9", "gene_name": "Btbd35f11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BH64-1", "protein_name": "Secretoglobin, family 1B, member 30", "gene_name": "Scgb1b30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLTGALLLLGAALLLTSEGDCGLCPVLQKKVHKFFDGTTEEYVEYLKQYNNDPLVLENAANIKKCSDRMLAEEDKTQATNFINKVTGSRSC", "length": 92 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BHG6-1", "protein_name": "BTB domain containing 35, family member 7", "gene_name": "Btbd35f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSFGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI40-1", "protein_name": "X-linked lymphocyte-regulated 4A", "gene_name": "Xlr4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI45-1", "protein_name": "X-linked lymphocyte-regulated 5A", "gene_name": "Xlr5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKKKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIMETQDQDISMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI50-1", "protein_name": "X-linked lymphocyte-regulated 5B", "gene_name": "Xlr5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQQTIVEKEISKVQNRVIMETQDQDIAMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI74-1", "protein_name": "SSX member B6", "gene_name": "Ssxb6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWVKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEIHDSDDECFEGSFGVTPIKRMKLTSVTISIHNVEGSHDSGENDSNLAETGGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BIM8-1", "protein_name": "Major urinary protein 18", "gene_name": "Mup18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 181 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CEK7-1", "protein_name": "Major urinary protein 14", "gene_name": "Mup14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG71-1", "protein_name": "BTB domain containing 35, family member 19", "gene_name": "Btbd35f20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLQPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKMRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTLKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG92-1", "protein_name": "BTB domain containing 35, family member 10", "gene_name": "Btbd35f10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CGC2-1", "protein_name": "BTB domain containing 35, family member 3", "gene_name": "Btbd35f4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQRMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 496 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A3KG49-1", "protein_name": "PWWP domain containing 4C", "gene_name": "Pwwp4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSEYVLCGWKSQLCPARVLSRPRTPAHSKRRGVPFLEVQILPVGEKRRVRSSKVRPLAKSEIISINSLAGKESRGRGSPGQTRASRRALKVALDGLGEGSSFFQGGRAGSRRTSTLAPKVPKEQASSSSSSLGQRLRLRLRQLLPLSLCQRLHLHLRLRLHLHMHLCLQGRNQKGQGLSQRSPGKRVRPDPGPVMMGSQNVPAVPVGEAQAHTAAGLPRSEVEGDVLRGTRVWPSYSKKTPLGKAGGNPGKRKPGTGKRKLRSLSAPASRKGTRSKTEQQAASGPPRHISISPKALKQRVRCAGLEIRAAGAQRKTALAENKDHPGLGTPKPDSKRASAACMPPVLRLRRSLRIASRKKKTHVLCALCGLPEWEPQVHSKVTNTRFKRRGARVQKDAKATNVVSAQEPSTIEQGTLVWFKFQDLPFWPAVVKSVSKIDKMARVLLIEGNMQFERRGIRVPLRKLKHLDCGEKVSLVRRASRLYAQGINWCFSVIDHYREGLSRGSLLGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVSYAELEDWEEETALGGKGPYKKLLPDRMRAAWDRANQKLVDFIVKRKGADQHLLDIVKGRKPSRWLDDLWKSKREVFCIETYLEDDDQLHLVARHLQEVAKEADEALLSLARGDKVRFTMEVLFPEAIIYSIAALDELSYKEAEEKYLRGPPVHYREKELFDKTILKAARKRSAARIRAARDPPVPTP", "length": 728 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A5WVZ0-1", "protein_name": "2.7.1.138", "gene_name": "cerk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKQSTLLCSELSVQRRLYEVTLNCAILAWKDVQNAKKHTGRAIYGAVKAGSHCVPVCEIIAVQEKEDDSPCKDTGKWQKVPQSPTDSCQHAFTVYYVERTRQHCWRCSNVTFQYSEHSLCLLWIQTIKEQLALLSAQSTEELAGVHQPLRRKTTRQADLRPQSGPHLFPGFHFHRRDWPHSFSAHPSELRFYIIADGKEPVMKCTGDCFSPRVQLHHLMQLIDGLHQASRKMQFNCQMNIMMFLPPLYHQPGNNGFSLFVSIVTEHANHARDHLKAEADLKKYDGVVCVGGDGMFSEIMHGLVSRTQQDAGVDENSTEETLIPCGLRIGIIPAGSTDCICYATVGSNDPVTSALHMVVGDSQPMDVCSVHSDDRFLRYSVSLLGYGFYGDVLKDSERKRWMGPARYNISGVKTFLSHRYYEGTVSFLPAEENLGTPRDKVQCRSGCSICRRSSSDKLLSKEDEASVSDVDCRDTWTVIRGKFLAINAANMSCACPRSPKGLSPSAHLADGTTDLILVRKCSRVDFLRHLLRHTNKKDQFDHSFVEVYRVKQFRFTPRFQECGSEMDLRESRAGGKHFFCQICRENRACGCMSSQSNWNCDGEILPHTAIQVRVHCQLIKLFARGIEEQPVFEDLYAHCQLNNPPNHEP", "length": 649 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWD5-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "man1b1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLPSTRKDFVSLTLSESGSYSNSKQWRRQSCWRKWKQLSRLQRSLILLTLMLLLVCGIATSPTLIGHWRGMNGDDVKNSFVVDLKNEYRSILPEPPSERKDFDRRGAFGLEKLLQGKVNVSGVLGDQNHGLDLKNADKGSEGQKPIISWRGAVIEEEQASDTDTKDTENQGDPASLALAESRLEAVREAFRHAWKGYKDFAWGHDELKPISKSYGEWFGLGLTLIDALDTMWILGLQEEFAEAREWVAKELSFDKNVDVNLFESTIRILGGLLSTYHLTGDNLFLDKAKEIGFRLMPAFSTPSKIPYSDVNIGKGTAHPPRWTSDSTVAEVTSIQLEFRELSRLTGDPKYKLAVMEVMKQVHKLDGKQDGLVPMFINTNNGLFTHQGIYTLGARADSYYEYLLKQWIQGGRIEQELLEDYLQAVEGVKKNLLKKSTPLGLTFVGELSHGHFSPKMDHLVCFLPGTLALGVHYGLPADHMELAKQLIETCYQMYAQMETGLSPEIAHFNMHDGSTQDVDVKIADRHNLLRPETVESLFYLYRLTRDKKYQQWGWEILQNFNKYTRVPTGGYTSINNVRDPSYTSPRDKMESFFLGETLKYFYLLFSEDPTLISLDKYVFNTEAHPLPVWPQAE", "length": 632 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NCW0-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 3", "gene_name": "USP17L3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALASGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NCW7-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4", "gene_name": "USP17L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATEESTLDHWKFPQEQNKMKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSMNSTDQESMNTGTLASLQGRTRRSKGKNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NDS4-1", "protein_name": "TBC1 domain family member 3B", "gene_name": "TBC1D3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGRKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NJZ7-1", "protein_name": "RIMS-binding protein 3C", "gene_name": "RIMBP3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKDSPSPLGASPKKPGCSSPAAAVLENQRRELEKLRAELEAERAGWRAERRRFAARERQLREEAERERRQLADRLRSKWEAQRSRELRQLQEEMQREREAEIRQLLRWKEAEQRQLQQLLHRERDGVVRQARELQRQLAEELVNRGHCSRPGASEVSAAQCRCRLQEVLAQLRWQTDGEQAARIRYLQAALEVERQLFLKYILAHFRGHPALSGSPDPQAVHSLEEPLPQTSSGSCHAPKPACQLGSLDSLSAEVGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHELIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARDLSEQASAPLAKDKQIEELRQECHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQRESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSEVRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQRDPQKALCDLHPSWKEIQALQCRPGHPPEQPWETSQMPESQVKGSRRPKFHARPEDYAVSQPNRDIQEKREASLEESPVALGESASVPQVSETVPASQPLSKKTSSQSNSSSEGSMWATVPSSPTLDRDTASEVDDLEPDSVSLALEMGGSAAPAAPKLKIFMAQYNYNPFEGPNDHPEGELPLTAGDYIYIFGDMDEDGFYEGELDDGRRGLVPSNFVEQIPDSYIPGCLPAKSPDLGPSQLPAGQDEALEEDSLLSGKAQGMVDRGLCQMVRVGSKTEVATEILDTKTEACQLGLLQSMGKQGLSRPLLGTKGVLRMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALTPAGVSCYTFQGLCPGTHYRVRVEVRLPWDLLQVYWGTMSSTVTFDTLLAGPPYPPLDVLVERHASPGVLVVSWLPVTIDSAGSSNGVQVTGYAVYADGLKVCEVADATAGSTVLEFSQLQVPLTWQKVSVRTMSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCPQKLSLAPPSAKASPHNPGSCGEPQAKFLEAFFEEPPRRQSPVSNLGSEGECPSSGAGSQAQELAEAWEGCRKDLLFQKSPQNHRPPSVSDQPGEKENCYQHMGTSKSPAPGFIHLRTECGPRKEPCQEKAALERVLRQKQDAQGFTPPQLGASQQYASDFHNVLKEEQEALCLDLRGTERREERREPEPHSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGPQQLGTGANTPARVFVALSDYNPLVMSANLKAAEEELVFQKRQLLRVWGSQDTHDFYLSECNRQVGNIPGRLVAEMEVGTEQTDRRWRSPAQGHLPSVAHLEDFQGLIIPQGSSLVLQGNSKRLPLWTPKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLHGH", "length": 1639 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A7TZG3-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 9", "gene_name": "Skint9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLLLECTSGSLIPPAEMTWRDSNGNIIPHSTAFNSQDRDGLLYLKSSILLKNRAKGPITCSIYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSIYLITIIFLNFLRGILVFCCLRRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRSRAFLLDDTYPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNSSKSDDSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS", "length": 319 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A7XV14-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 11", "gene_name": "Skint11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSASCLPGFFMVCILLKITVLTQVMSLDIQINTQIPDTEEGVLVECTAESLFPPAEMTWRDSKGNIIPPSSTFDSQDRAGLLCLKSTILLKNRTEGPITCSIYNKTTNQEKRRSIILSDVLFRPQYMSLMSNNLLYLGIYLIFILFLNFLKGILFCLTKRLVHFRKRMIKIKKVWSNKTRACCPLIWEFLEIVLFIAFLPLYLMFRIRVFTLDEAHILYNNWLWKVCKTLIAMMILFTVLILFLLWTLNRYGKMPCLSSMNIDVSTHDAEQNSSKSAKFQENYDVAGQMILETYEETIFCQHQESCEEYNYDPLLLSSLDALGTCEDEKFSQHQESFEEDEDLQSFSDFKIELYSKLGNLTH", "length": 364 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B0BMZ6-1", "protein_name": "Cilia- and flagella-associated protein 119", "gene_name": "Cfap119", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MITPRSSQSLEMKVQTELEHSPKLQEEPDRSPSLVDSSVIRIGTDEQNESPAEATSSPVEVAEDPGANLFPPPLPQPRICMWKYLDIHSMHRLEKAATVEEMREVLAELLELGGPEQSLRDAIILDLFSHALIFCRQQGFSLEQTSAACALLQDLHKACVATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALADYVVNTYFRHFKLYKYVFTPQVRLDLSLSYMGLQSLHLWPEEKEDEEATVEQAATPQEEEPEAVTEAEQQPSEVCILQTYIKCQLNKELRQLQQLVEERLKESEERLSNRLAALERPYQTPPSKGKSKAK", "length": 332 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0G0Z9-1", "protein_name": "Probable polyketide synthase 6", "gene_name": "pks6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLKNIDLIEKGVAIVGIGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSEASLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGASNIDYQHTNKHQDSVLKNAIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSDISIVGGVNLILDVEMTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECVGVVVLKNLQDAIKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSAPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTAIQIYSKSNYLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQSTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNLNIELPLYQWSDELYFAQNQVLEQHRKGGPPIDHLGLSNSYYSPFKNSYKTLIDINYKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDHKSNEWIQSSNSNFQLLDHGNDIPSNYNIKEIIKNKCNLSKLTKNELYKNIKSKTGLNYTGVFQGVTECYIGDNCTLSVVSLESQTNSFLNIPILDTCLHGMLILINDQCQIVFDKAIGFKYYSSNIPADFKENKDSFYVYSNLRPRVGGDSYHGTIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFQSSLNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSFEEKDDTYFEFNKVIIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKIYKCSYLRKKNQVISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYHPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLTTNGQLVFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCGMPQQSWYQLLNSCNFKDIVMSKECIFFGSVIQAQKPPISLLNSQPKYDNIIIYGGSINSSFVENIKLDSNSKSLFQIETIQEFNKLISKSTITNDSIVYFIKTLETLSLDNFKQITLEYIEINQKLLQINSLCKHVLIVSDSRKTNYLASSAIGAARYFDEFPLLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKKIQIKPSKISHIEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGRDGFGLSTFEILKWKGFKSNLFVTVNSDKTKQYLLKKYGDLITGIYSNTDKSYVAEIKNKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLTKYGRIIDLNSNHLNQSEFLKNINFKYNHGYHNFELSLFQKNKILKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINDILNENQQIRNIDSIFHFAFQQIACKVQEINMKHLNISHGAKSMGAINLHNQSIKRNWKLINFVMASSALSFIDSTDQCTYACANTLLDSFSKYRVSLGLPSTCINLGLIESTGFVSKNESISVFLDGNGIIPTPINRVLGLLDLQIQNASKFTNSMISNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQNKYLPSNRIDYWKNEMKFEESIKPIPNEIRSRNNNSGKIILLTGTTGFLGGFLLFNMLRLDSCKLIYCLIRNKSKSSYPLDEIINNLKYHQLYEKLNKSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKNYNIPSILIRPPSIFLNPETGIGHSSDLTLLMIQSCYELGYCPNQILNGFILINTITWLSNNITNIIMNDNCWTNSKMNIYNVHGKQIQSSLIIKPLEKHFNCKQINNNDWIDMVNNSNKKSCIKLKSFHSLENIFKSENKGYKSNESQSISLSTKSLLESMGSYNTDLKITDKMIISHIKHIFK", "length": 2924 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G100-1", "protein_name": "Probable polyketide synthase 7", "gene_name": "pks7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNFKNINLIEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYLHTNKHQDSVLKNVIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAISQGYHSILNGTSDISIVGGVNLILDVETTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECAGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNEKLSVNEIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRKNEKPVSMMINNFGVTGSNCCLLISEFKKQDYEPYENNYKSNNKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLCQRSVIAASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLINSKLSKYYGYSVLEKLRSIGDDDTTSIHDPNISQPAVCMISVSLFELYCHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYHRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSVLKLNIQSNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIINPVRFTQTISNIYKHIESNQLNNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNKKIDLPLYQWSDETYFAQTQTLEQHREEGPPIDHLGISNSFISPFNNSYKTLIDINNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNQWTQSSNSNFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTHIKSKTGLNYTGVFKGVTECYIGDNCSLSVVSLESQTNSFLNIPILDTCLHGMLVLINDQCQIVFDKTIGFKYYSSNIPAYFKENKDCFYVYSHLKSKSADSYHGSIIVMLSDGSVLYEIQEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSQIPTPSYFKSIIYENDSFHSIVNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKFYKCNNFKKKNQIISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYLPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQVVEQMYQLLTPNGQLVFVEPPYKSILIDSIVGSFDQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDIVMSKECIFGSVIQAQKPPISLLNSQPKHDNIIIYGGGNNSRFFENIKLYSNSKSLIQIETIQEFNQFINKSTITNDSIIYFIKTLETLSLDNFAQITLEYIEINKKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSKISHIEASSIPIDYLASFISLFNVGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFKSNLFVTVNSDETKQYLLDRYGDFISGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKNARIIDLTSNHLNQSEFLKNINFKYNHSYHNFQLSLFQKNKIQKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSIDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYACANTLLDSFSKYRVSLGLPSACINFGSIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQCGREI", "length": 2513 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G101-1", "protein_name": "Probable polyketide synthase 8/35", "gene_name": "pks8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLEIINLIDKGVAIVGVGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSDAHQIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYQHINKHQDSVLKNVIAQSAYAVSNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVGMIKAYSYLSMLSKTHGKCKAFDESGDGFTRGECATIVVLKNLQDAVKDGNRIYCVINGSSSNVDGGGHMDKVNLYSPSKQSQFNNINSAFKSTNGKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRINEKPVSMMINNFGVTGSNCCLLISEFKKQDYESYENNNNNKSNHKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLYQRSVVIASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNDEIFKKSIDLIDSKLSKYYGYSVWGKLTTIKDDDLTSIHDPIFAQPALCMLSVSLFEIYCHWGVNPSFILGHSLGEISAAYCSGMIDLDTFCYTVYYRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNDIVFIEIAPHPTISFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYSINFKCQLENKKSNQSINLPLYQWDDELYFAQTQTLEQYTKEGPPIDHLGLSNSYYSPFKNSYRTFIDINNKPFQYLKGHMVKGKYYFPGCGYIDIIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTQIKSKTGLNYTGVFQGATECYLGNDCSLSVLSLKSQTNSFLNIPILDTCLHGMLVLINDQSQIVFDKAIGFKYYSSNIPSDLKEYKDSIYVYSNLKPKNADSYHGSIIVMLSDGSVLYEIQEVIFKSLIPIKHSLKIEYPNDELYKVHLQSKDSQIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKNQRLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSKIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCSYLRKKYQMISHVIIHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYRSLTIDESLLENQAIKPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFIEPPYKSVLIDSIIGSFEQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDILMSKECIFVGSVIHAQKPPISLLNSQPKHDNIIIYGGGGNLSFVENIKLDSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNYKQITLEYIEINQRLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILVDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNNNNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSNISHNEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVDLDETKQYLLDRYGDFITGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKSGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFQLSLIQKNKIQKCLYEISHAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAVNLHNQSIKRNWKLINFVMASSALSLIGSTDQCTYACANLLLDSFSKYRESLGLPSACINLGSIESTGFVSKNESISEFTDGIGYVPTPINLVLGLLDLQIQNAGKFTNSMLSNLISSKFKNIQQTSLFLKFDYLMNLNDNSEQTKKENIGNKNIDELFIEKVSELFSTDQSRINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIKQLQNNTINISIKMILNSLMKNNQI", "length": 2514 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G110-1", "protein_name": "Acyl-coenzyme A oxidase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKNRIEIIKKHLEVNNSQTTNNKDEVLEKELFNSIDTNINVGELKLLIDSVEESKYKDETREFIRNHPKFKENFIGLDMATYRQLVLEQCAAIANRGLIHFTDIKNNLHRYIGALEMFALYNNNILTKLSVQYTLFGGPIIFLGTSRHEKYIEDANTLKTMGCFAMTEIGHGSNVRGIETTAHYDKQTKEFIIHSPTPTSEKFWIGCAYLHATYAVVFANLIIDGTNYGIHAFIVPLRCPKSGAIMKGITIKDCGHKLGLNGIDNGQIRFDQVRIPRENLLNKYSDVSEDGVYKSQFNTPIKNFAATMSPFIVGRMAITKGCSGAAKTSLSIAIEFSHIRKQFGPSSNKELPLITLSSQQRRLMAPLARTILFDLYIQRLTNELCQEKLPASIHAHCSGIKAVYSWFCVAALQTCREACGGQGYRSANRIAEFKNDCDIICTYEGDNTVLMQQLAKYLLGVKQKQTNTTTNRIYLDGEDAKSLFFNFSNINQLFETREEMRLAELKQIIDNSKESAYFAFNNAIPWAVKLGFAHMTKIVFQNSINTLKLKNVKPLTHLIMLDALVSIEEDLGWFVSNHLISPNVAQSIPFLIQDLCFEVTKVSKQIIASFDIPENCKPSSKDLISDLF", "length": 629 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G138-1", "protein_name": "Probable polyketide synthase 21", "gene_name": "pks21", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLENKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSIAMGFQSIQNGTSNLSIVGGVSLLLDPYISKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSKTSTPSKPLLIGSLKSNIGHSEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNNNEKPVSMVINNFGVTGSNCCLILSQFIEQSINQNGNGHSYPAESQQQQQQRFLIPFSANSVKSLKNYEDLIINDIKISTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTNNDKSSNITIKRNQPLVVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLNLKENNIFCAFLGSLSSFHTSSQHSTKNEILPLDIPSKQSRIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDVNFKCQFNHNDDDVSSIRNSKVNISLPNYQFDEQHYWKVDINFEQYRLNGPNVFNSLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNQDIIINNLEFLAPFVLKENVKHTLQTNVYQLGNTDYRVTFNIKDNKTNQWVQTCTGNFQLISLKDNNNDHSSKYDINQLLSECNFTTLSKQEVYKHSRSITGITHLGAFQGIEELYFGNDCIISKIQVNTENFDIDGKPVYQTYDKSFFNTALLDSCSQTIVGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLESDSYKSSVLVLLEDGTKLLEMDCISLHSTLPLLNSLLINNPTTELFTNNLQCKDSLVNILSIDNNQTFSSISSSNTVTEIIKQTIKPIINEKIVFRILQSFSDLELSKQIIETLNQIFDDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDGDDETIIKSIFNILSSNGLLLIIGDDIGDKYNIDSLINLGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKESKYTNEFMKLISNNHISCKQTIISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGTARYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNQIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISNENQNCEFKVGDNVFGIACDTTASHVIADVLYVSHKPENISHVEAASLPVIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIELMHINKKVVSRLLKSISNALNENKLKPIPITTFQIEDVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVGDPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCSYVSANLVLDSLSRYRKSIGLPSTCTNWGAIKSAGFVSRNELVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKNSNLIVSKFNYDSIKKLSSETSTFQRLDFILNSIKEKDNDSNGGENSVSESIQTKILNKISELLSIEQSKINTDIRLSDYGADSLTSVQLKNFIDKDIKSNVITLQQLQNNTIDMNIQTILEQIKKLDSNETKGKSKNIIKKDSAPTLDYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKIKVIVGNLASPLLGLSKLDFDYISNQINLIINSGADINLASNYEESKVVNIGGFIELIKLSTTGDYQKPIVGFSSVSVFFNASNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLLREVAKRGIPSMLIRPPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPKIDKNILTSPIGWISLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSAMNPSFSFLEKQYGCEMVEYEQWKNIINQSKILSCVKLKTFHSLDDLYNIYNLGNGFGVSKKTKELLQSMNSYEGGMVNEKMIQNHINYIFKN", "length": 2779 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G149-1", "protein_name": "Transmembrane protein 184F", "gene_name": "tmem184F", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSHINIIYIIWILLFFFTCLISFFLVNRHLVNYSSPNVQKNVVRIVMFLPLNSGLSILSSIFPGIAIFNSLVRNCYMAFTAHCFFSMMTNSIGEKNMLDLFESQGKMKFLCCKVMKLNRKLFNTLRFGSIQFFIVKIFCSIATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKYRIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIYSYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENGDKKPKKNIEDQNQENSNDQPLSIQMA", "length": 348 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G188-1", "protein_name": "GATA zinc finger domain-containing protein 16", "gene_name": "gtaP", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSYQIQNQPYQQIQNTHPSFQQVQPMQVPHLQQQQQHQTMIAQQQHTPPQQHTPPQMNMIQQHTQPMLSQPQISLQMQPPSPILASQQQQQHMQSSPILASSNLTNSNNASQTTLPIITSKLLLKKEPIDQEVVNSTHKTTTTNNKPPKQSKRKEKERLEEEKQTVAQQQQYQPPFIPLASNESNSDNPFKGSHAYGVSTTPYGNSQFNNNNNNNNNNNNNNNNSNNNSNNNNGNNNINNNNNNSNNNNNNNSNNNNNNSNNNNGNNNNNNNNNNNNNNNNHNTNNNNSNSNNNNNNGYQQDKKDDYSMMIWSEVGRKINILIRTTSKATKGTPISTQEIAEAIGASNGVTADLVELIKSINDPTYVRKLPPSSISNTPTMGSQSGGMVYNSSPMLSPSTMSPILQHGNYQMGGDMYFGGNNQFSGDKQSALNNVKNSKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVTNTPEWRRGPNGAKTLCNACGLAWAKSVKSEKQKELLANSTGVNITEPKKAQKRKKESSDNNNNNNNSSDSNKVLKSDDGSNNTNLTNDDDNGYPSSPNSSNSTSPSSHNINNNNNNNNNNNNNNNNNNNNNNNNNNNNIGNNNNNNINNNNTTNSITTPTTTPFPTTIPAMQIVSQLPVMVPQTQQQPHMSGNIISFQALHQNSGYQHYK", "length": 695 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0R191-1", "protein_name": "C-X-C motif chemokine 11-6", "gene_name": "cxcl11.6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKTLAAFLLLSCLIAGEVNGQDRSSRARCFCVDKGLNMVLLKNLDKVEIFPPSPSCNKHEIVVTLKNGAGQKCLNPDSKFTKNVVLKAIGKRMQQSVPHSTTTGTVKSSMTSSTSAPTAFK", "length": 121 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B1AV09-1", "protein_name": "Leucine zipper protein 4", "gene_name": "Luzp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHYSRRSRNRFRRAPVHSERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIDHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESLDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AY40-1", "protein_name": "SSX member B8", "gene_name": "Ssxb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSFCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMSGKEQDKQSLVEGIEVHDSEDECFEGSFGVTPIKQMKLTPVTISIHNVEGSLASGENNSNLAETSGIQVNVWSHRLRERKYRVIYEEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AYI3-1", "protein_name": "Predicted gene 13272", "gene_name": "Gm13287", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNITPMTLGETTSCYSQTLRQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AZM5-1", "protein_name": "Predicted gene 12886", "gene_name": "Gm12886", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLPCSLWLLSVCLLSWCCDAKLPVALDPESESVPKPPVLKTATEIAAIVVFMKTSNETPKSGTYGQSLQDGKNKIKDVEKEVLDACSQLCQSLAQDPNLHHGYILRAYFKEHQFLCCF", "length": 119 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1B0R2-1", "protein_name": "Spindlin family, member 2D", "gene_name": "Spin2d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSKLTKKRAGRKRQRSRSPALPKRNIVGCRISHKWKEGDEHITQWNGTVLDQVPVNPSLYLVKYDGIDSVHALELYKDKRVLSLKVISKRVVSSGVTDSSFADAIVGKEVNHLFEGEHGSKEEWRGMVLSQAPILDNSFYITYERDPILYTYQLLDDFKEGDLQIMEGFSDPPSLDIDLELVDGLIGKHVEYTNDDGSKRDGLIIYQIETKPRVYLVKYEDDVHIHVTHLEKEL", "length": 236 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B4F7F0-1", "protein_name": "Claudin", "gene_name": "Cldn6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV", "length": 219 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B7ZW38-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 3", "gene_name": "HNRNPCL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS", "length": 293 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B8JKF6-1", "protein_name": "BTB domain containing 35, family member 13", "gene_name": "Btbd35f13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRFLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGAINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD1-1", "protein_name": "Spermatogenesis-associated protein 31F1B", "gene_name": "Spata31f1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD2-1", "protein_name": "Spermatogenesis-associated protein 31F1C", "gene_name": "Spata31f1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD3-1", "protein_name": "Spermatogenesis-associated protein 31F1D", "gene_name": "Spata31f1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HLM6-1", "protein_name": "Small integral membrane protein 20", "gene_name": "Smim20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAARNLRTALIFGGFISMVGAAFYPIYFRPLLRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK", "length": 69 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C7G009-1", "protein_name": "Thioredoxin fold domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLILNGNWLVKFGAGWSGHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEYESICIKYNIIGYPSLVFFDEGEIKHYRGPRLFENFKEAIDKHLNKEFVAFSQNQPSKIIVITNENLDLLLTGNWLVKFGAAWSLHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEDNSICKKYNITGYPSLVFFNEGQIKHYTGPRQFENFKEAIDKHFKYGVKWSGHCKKFQPVLENLAQHYNSDIENSKIKVAQVHCEGDDSICKKYNITGYPSLVFFDEGETKPYRGLREFDKIKEATDKHFK", "length": 303 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G010-1", "protein_name": "Calcineurin-like phosphoesterase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLKIKFSIISLFILKLVISKPILKFNNNNQFKIIQFTDLHYGSEPVDDIDTIFSQVNILDYEKPDLVILSGDMVTGYEEQFEDDDRNYWKYWNVFTRPFVERNIPWAITFGNHDGEGALSTNEILKIDQTFNLSLSQSNPVEMHGIANYVLKISSSNSLKSEPASLVYIFDSSTKGCSKLDWGCVHQDQVDWFKNTSKSFNKTDSIAFVHIPPVEIIDLWNNYPVYGNYSETSCCFDNDYGDFVSSLVESGDVHGLYFGHDHENDFHGDYKGVDLGYGRKSGAGSYSSKKPLGARVFQLTESPFTLSTWIREEDGNIVSQVIHPPSEFDRKPLQCKMKDKYSKKELIAIKVIGGFLIFLGIVVVGLIGFFGFKHYKKFKKQTLEMQNLV", "length": 390 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G064-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKDEKQFQQFPNKGRTVQANTDLPKGSTVFRCAPFASSIEDSDKLATEKYCGFCLQRIPKSDSKECLCKNCKLYSVCKSCRSINESAVEPFQIIIKSTFHLGSDTRDMRLLLRIIANIANGKQGMQTPIDDYQDFMGLTSTLDKVDKEHMTKFKRGVTSISSLISSVRGVGYLKNTITIHEILECFSSVLTNAHQFSYATSKEIGRGVCPTGYFNHSCMPNTTWSLDDQGMLLFSTSSNVKKGDELSLGYLANEYPLKNRRRELLDGYYFFCQCPLCEFQSNLSGYLCEKCKEPLLNDSIVYHEPSLTNPLDTGIGLIKHLRKMIDFRQQSVEFKKMFSSEQLSNILQKGVPKHIQSVFNCDASDNEELQQIVEISERSIKSLPLINGEPIDFYPLSDRNYYEYFKQLKNSKISSPEELQRIKDKILSLINPTIYNSFKDKIDKRLLI", "length": 449 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C9JPN9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 12", "gene_name": "USP17L12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLKLSSTTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3YTW8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r258", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSIHQFVILVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAESRATQTILIVVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNL", "length": 314 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTX5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r259", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY1-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r107", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLDFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r138", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YXI8-1", "protein_name": "Predicted gene 10377", "gene_name": "Gm10376", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQAGSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQNNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKILCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAVMSNPCA", "length": 184 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYI9-1", "protein_name": "Predicted gene 7347", "gene_name": "Gm7347", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYY1-1", "protein_name": "Secretoglobin, family 2B, member 7", "gene_name": "Scgb2b7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACFPFFEAYASVLSGSRVWLYQELQAFDATAEEKVALEKIQDCYSEESIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z236-1", "protein_name": "Predicted gene 3676", "gene_name": "Gm3676", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQTVSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQHNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKTLCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAAMSNPCA", "length": 184 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z8D1-1", "protein_name": "SIGLEC family like 1", "gene_name": "Siglecl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLWGLRSLLLLHLGFLSPVLVDTKKTAVEDGLCSTVPCVIEFSKAPLRKPMIVSYRLNENISFHAGTSQPRGPVADLSTEEVEYCILLTHNMLGRKNMTYSLYVGLGAQKDLTQKQELHIPGSSMAGEPVSLTCTIHSTCQESKALFLSWKGPIMSSSTTVPINPSSALAIDPKPEDQDTTLRCHLKLSLDNLSSSKVVKLQLVSPARLLNYSCLLKRTLTCSCSFHGIPTPSVQWWVGRTPVSVNSIDAILHMTSTTLESWTNSTIHLMWEPEIIKSLRCEGKNQYGVHASGIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFFFFLVVLGMKILNWWEENQTCKNEEAPTLKKPVWGGAKPAEVGS", "length": 369 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z8T0-1", "protein_name": "High mobility group nucleosomal binding domain 2, pseudo 3", "gene_name": "AABR07053402.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAERDAQGDEAKAKDEPQRRSARLSAKPAPSKPKKAPAKKREKIPKRKERKADAGKDANNPAENRDAKTGQAQKAEGAGVAK", "length": 86 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z9U8-1", "protein_name": "S100 calcium binding protein A7 like 2", "gene_name": "S100a7l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSSEQEVMKLFDLFQNYHVRRTDKLDVQETKRVLREFFPNFMKALNASGIKILNDLEKEITLDEIWDMIGRMAMAYNKKNSNALKD", "length": 91 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZAM9-1", "protein_name": "Olfactory receptor", "gene_name": "Or4f60b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKVNYSVTSEFVFLGFTNSWDIQLLLFLVSSMFYVACIMGNCLIIFTVASDTHLHSPMYFLLANLSFIDVGISSATSPKMISDLLKKHKVISFRGCVIQIFFNQAIGGAEMVLLIAMAFDRYVAICKPLHYLTMMSPQMCLFFLITAWVVGLMHSVIQLIFIVNLPLCGPNILDSFFCDLPQFIKLACMNTYRLELLVSISSGFMSLVSFFLLSISYIVIILTVLKHSSSGAYKALSTLSAHVTVVVLFFGPAIFFYIWPSSTHLDKFLVLFDAVVTPFLNPVIYTLRNKEMKRAMRRVFRHLMGYRQIS", "length": 311 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZC26-1", "protein_name": "Ferritin", "gene_name": "Fthl17fl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEDAINNHIRLLLQASYSYLSMAFYFDRDDVALGNFKRFFLSKSHNCKASAEMFVFMQNKRGGHVFLPSIAKPDRESWHGGLRAMECAFRMEMTINQSLLNMHELAKGKDDAHLCDFLGQHCLDQQVHVLKKMGGYLTNLRQMGAPEQGLAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCM9-1", "protein_name": "Dynein axonemal assembly factor 3", "gene_name": "Dnaaf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTPAGSGNGFGTVSWWGLSPALDLQAESPPVDPDSQSKTEHKIPELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLELWGNALLRPSVAAFLRAQASHLSNLVPEPDRLEELLPWLSLRPLKFRERDALEAVFRFWSGGEKGPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRWRDTGVAFELRDLSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHNVTELFRDVAAWRGPRAIKGNVEETKSPEPDAPAQEPFTIHFLPLDSSQTLHHKTCYRGRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPPQADLAPPPEVISPVQEALAMSSAIAPLKHVT", "length": 583 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCW3-1", "protein_name": "SPATA31 subfamily E, member 1", "gene_name": "Spata31e1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METFLLLMNSISDFWMSSSSMSTVMDMIFAILCGVGFFFLLIPFLKEYPGSPPPGSKKNISEVVKRRQSKDRKKSVTVDGCRDSQKNSLDIQHDLQTMESPIQHLLLDSSPHPFWNSKEKLNQLSLPQLFSYLKVLEALIQQKFNQLLLGLSSVLSESVVATAWVSREPSSGERKTVRFSDSLGFDQALPLAKGPPQRCLDQPLPHQLVTPSLVGMTEIQEQENLPNSISYQTPSIFQSRARGTAYPTTATGIQVPLPTTNEPCHPGLNWKDIPSCKVQNCQGASSQPTESLARCTLPTKNTRSASIPPEHYLMVHHHEQPQHEEKAINLGEQQRTHARFLPSKEPAQLQGDSPPNSNGYGKNWPELNQPAQPSTLNSKTYKWNQMMGPVPTGMLLKKVIAKYGIPNTIKKDLKLRVKDLLCTSSSTPGESLETKNLTLRTDEHSMNTTENLSFLDPKTTMMKSNIMQLPMKHRQLPCDSKAEPYTKAAFILENLHHQDPGGIRVETASSARLRSPLFEQSPPEVQKTQSSPPPIDSHGHSRSHPDQWQRYQSVQPHALCSQAQPQQSRSIQGTGRSILQPNISVWMSKHERWMRSEDVASGHTSWSSRTVGYRDRVSPSVAKQTNILKIKEESPHVWRANLGSGEITNEQALNNSNEDFEPIEAKRSQGHLQMPTQQNTGYLHLKTEEYSNNDLKVNKQPQAWSVSHHADGSNTVHHAMVKLPSQHSLPSLQNGWQDPKTSQGLGDLLMNRDQSVETQFRVHKDKTEATNDSVFHPSEKRPSNLKYGGISQGERLGRVKSSISSFTQLKDSAKTESKSSPNIGGKREAPSKSSLKFIWNGAQYENLSTKLKGQRDSLKKDIPPPVTEQTQEVVHRINVIYSTAVELQSLMDSLVHKLVKTVGEPSELTRKHMTKVQEYKMESLPFQLGSSSQPSKGLHDPNKSRSVRRMSDDHTSPKEPNNHTFTYRGNRDKMQAGVDVQRVCYQHLDKVKIGFGQHSTPMRNGNPCFHKKAGDKQESSLADQSTGDADQTKPKNEIVGSPHRIPERHNQSSRYREIRDNQEPSVDHKAIDPHQNTKKGMGYSQLMSPKENHPVKISGTAAQGASDPEEIRTKSGKECSPHRSPKMHDHSLRHREVRDKPQPGINTQRAYDQHLNSPKKRMTSENLLTPKGTNHPCWHRVTGDKQQSSLSDQRACDPEQMRRSGMSSYPQRSPKVYHLSCSSEKIGEKLLPLVNDQRTHDKHPNSVKTRGCDNLPTPKGSNHPQGYRVIEDKQQLGLAYRRTCDPGQIKKSGMGKGPCKDTEECNLLYRYKIIGNKQQPGIVHRACDRHQSSKEGMGQGQPMNPKVCHSAKHRRTGGQDQSGVAAQGASNPR", "length": 1373 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDD6-1", "protein_name": "Synaptonemal complex central element protein 3", "gene_name": "Syce3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQELLTETKRKQ", "length": 88 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDJ1-1", "protein_name": "Olfactory receptor", "gene_name": "Or13c3f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDDMDKNNQTFVSEFLLLGLSGYPKTEILYFVIVLVMYLVILTGNGVLIIASIFDSHLHTPMYFFLGNLSFLDICYTTSSVPSTLVSLISKKRNISFSGCTVQMFVGFAMGSTECLLLGMMAFDRYVAICNPLRYSVIMSKEVYVSMASASWFSGGINSVVQTSLAMRLPFCGNNVINHFTCEVLAVLKLACADISLNIVTMVISNMAFLVLPLLLIFFSYVFILYTILRMNSASGRRKAFSTCSAHLTVVVIFYGTIFSMYAKPKSQDLTGKDKFQTSDKIISLFYGVVTPMLNPIIYSLRNKDVKAAVKYILKQKYIP", "length": 320 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDT4-1", "protein_name": "Transmembrane protein 92-like", "gene_name": "LOC100364194", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQEAWVLDALTVIFGLLFSLQGVSSNKTIYKCEDIHCPKGFRCCDNECCLERKIWNTDNEPFRILFIILLVMLPLLCICGLVRRFCPKCRELQHEVRTADHQSPPDPPSIAPLESIWVTSLDPPPPYSQVVQKSTPTEPPPPYSLRPEDSTCPMRETSHETL", "length": 162 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFJ9-1", "protein_name": "Family with sequence similarity 24 member B", "gene_name": "Fam24b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSSFDLRTIIMIVIGSGILAAMFLLTGVVLCLYSKIARALNPSGTGKELDDQLCSDPCKTTQDQIIRVNSLNADTCRPFHGSTIGLENCQPLQCFSACGTYEGANSLTPCLCNTKEGL", "length": 119 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFW5-1", "protein_name": "Transmembrane protein 107", "gene_name": "Tmem107", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRISGLVPSRFLTLLAHLVIVITLFWSRESNIQACLPLKFTPEEYEKQDNQLVAALCLTLGLFAVELAGFLSGVSMFNSTQSLLSIAAHCSASVALSFFIFERWECTTYWYIFAFCSAFPAVTETALFIAVFGLKKKPF", "length": 140 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZG05-1", "protein_name": "40S ribosomal protein S12", "gene_name": "LOC120100003", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEEGIAAGGVMDINTALQEVPKTALIHDGLARGICEAAKALDKRQGHLCVLASNYDEPMYVKLVAALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFEYKK", "length": 132 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGM7-1", "protein_name": "Peptidase inhibitor 16", "gene_name": "Pi16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNCRVSWMPQHSSAAVSGICPPQEGPWSSYSLWPEPPLLREKEAVAKDSRGVDSTLVQTQGTQPSWRHCVSWAGPPDTAPAAPPQPGWCLCGKDFKSSRQTPDRERQRGLATMHSSCSPWVMLPQLPLLLLLLLLLLTATGPATALTEDEKQTMVELHNHYRAQVSPPASDMLQMRWDDELAAFAKAYAQKCVWGHNKERGRRGENLFAITDEGMDVPLAVGNWHEEHEYYNLSTATCDPGQMCGHYTQVVWSKTERIGCGSHFCETLQGVEEANIHLLVCNYEPPGNVKGRKPYQEGTPCSQCPLGYSCVNSLCEPERKPEKAQDSPPRVTEVPGSRETGIPSLATSESLHFSSVTKVSDSLATEPSPAVETKAPPSLATEGPSSMATEAQSFLTEVPSVSATHIQPSLDEGPVNFLTSTHIPVPKSTDKEASSKSRAASVSPEKSLYPKMSPTETGESPPQIQEEAEPKAELPEREDELPEAEVELPEAEAELPEAKAELPVSSEALVPVLPAQERGGPKASLEHSSYPVPTYLPNFPSASGNATGGRTLALQSSRTGAEDPEKASWDSKNSAPVWGPFPGLLLPLLLLAGIF", "length": 596 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGX2-1", "protein_name": "C-type lectin domain family 2, member M", "gene_name": "Clec2m", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTESSLRLSQSSHHRLTFDLKKVVTLWILVIGVIAVLLWGFFSFPKKFTVTRQTKNEVCSDGVKICLHGWNKLNRNCFTHFSHANSWFTAKETCKFHDATLAVFNDQTELDIVMKQMEDIQTFWIGLYKKDFRGPWVWTNGSKYNNWYEVQDYGHCAFLHKSGIDSTNCNDLKEYICTQEGHCP", "length": 185 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZIZ8-1", "protein_name": "Ferritin", "gene_name": "RGD1560203", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEEAVNTHIRLLLQASYSYLSMAFYFDRDDVALENFKRFFLSKSHDCKASVEMFVFMQNKRGGHVFLPSIAKPDRKSWQGGFRAMECAFRMEMTINQSLLNLHELAKGKGDAHLCNFLGQHCLDQQVHVLKKIGGYLTNLRQMGAPEQALAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKK4-1", "protein_name": "Zinc finger protein 869", "gene_name": "Zfp869", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTPIVGLSSPDQGLVSFEDLVVHFTQDEWDLLEASQKSLYGDVMLETFRNLTAVGYEWEDEAIEDHCEEPEVNLRDIVSHSEYTHEYEHKEYEEKPPDANFLTSVEGCVETKTSSGPSVCEVCLKTFGLYHLTYNGHHNYDYKELRGSQTEENDCEGNSCDKTSGSLQKEDKIHTGKKLYVCQECGKAFRYPSALQLHERIHTGEKPYECKDCGKAFRGLSALHLHERIHTGEKPYECKQCGRAFTYLSALQLHERIHTEERPCECKQCGKTFRYSRALKLHERIHTGEKPYECKQCGKFFRSHRTLKLHKRIHTGEKPYECKECGKAFRWLTSLKLHEKIHTGEKPYECQECGKAFRCQASYHRHKITHGGETLYECKECGKSFIYPSLLQVHERTHTGEKPFECKLCGKAFRCQSSLRLHERTHTGEKPYECKHCGKAFSSYNYLRFHERSHTGEKPYECKECGKTFTHRSYLRSHERRHTGEKPYQCIQCGRSFSRHSSFKRHQSVHGESPYEQYLIPLSPFSSKE", "length": 530 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKM3-1", "protein_name": "Protein GPR15LG", "gene_name": "Gpr15lg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLTLSGLFFMLFLCLCVLSSEGRKRPAKFPKLRPCCHLSPRSKPITWKGNHTRPCRPCRKLESNSWVVPGALPQI", "length": 77 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZL22-1", "protein_name": "Olfactory receptor", "gene_name": "Or1x2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKWGENETGVIEFLLLGITNDPQQQRILFWAFLCMYLVTVAGNTLIFLAISSDPHLHTPMYFFLANLSFDDVCFTTNIIPRLLAGHVSGTETISYAYCLTQMYFLISFGNVDTFLLAAMALDRFVAICYPLQYHTIITPRLCVGLASVVWISSGLIALVHTLLMSRLTFCSSIPEISHFYCDAYLLMKLACSDTRINQLVFLGAVVFFVAPCILIVFSYVRIAMAVFQIPSAKGRHKAFSTCSSHLTVVILFYGTVLGIYIRPPDSFSTQDTVATIMFTVVTPMLNPFIYSLRNKDMKETVTRLLHRGSKSS", "length": 313 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZLG9-1", "protein_name": "N-terminal Ras-GEF domain-containing protein", "gene_name": "AABR07047293.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSCCVWTTEGSGLKKDKNEGQGGTWKFMLLSCLQCLWPFAQKEIDLTRDNQAQDHEDQGEHEYAPQVVTEPCRESRISADMVENLVNRLVSSLQGGDPFFIPAFLYGYRQFTTTQHVLDRLLKRFAYFYLGCEEDEQIKSSLCCFLDTWIDQYPEEFSQTILKKLKTYLTVNMPSSDLNLRVHMLLKELRQESNESEGKDDDSVSLPVTLLYKTASAADLSSSVEVGSHTSGDLDIEVWFPSQKVQPEPAYPHETETPQSTIKVISWD", "length": 269 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZMT2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "Ndufa3-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRSSDFFKNAQAKEPVLVVSFSVWGLAVILPMISPYIKYAGVISKATPYNCPVPVRDNGNVPGVPSQPQERLSPSLERLKNL", "length": 84 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNA3-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "AABR07049918.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQETKNVVNPLFEKRSKNFGIGQDIQPKRDLTRFVKWPHYIRLQWQRAILYKQVKVPPAINQFLQALVRQTVTQLLKLAHKYRPETKQEKKQRLLAHAEKKAAGKGDVPTERPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKMGVPYCIIRGKARLGRLVHRKTCTTVAFTQVNSKDKGALAKLVEAIRTNYDDRYDEIRCHWGGNVLGPKSVARIAKLEKVKAKEFATKLG", "length": 266 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNR1-1", "protein_name": "Elongin-B", "gene_name": "Elobl9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVFLMIRRKKTTIFIEAQELTTVLELKRIVQGILKRPPEEQLLFKDDQLLDESKTLRDCGFTSRVAKAQDPATVGLVFREDASEGLQIHPYSTPLLPSVMKTGTDSLE", "length": 109 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNU6-1", "protein_name": "Olfactory receptor", "gene_name": "Or5p66b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSWLENGNHTTVAEFLLLGLTDDPVLRVILFTIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLASVDIGYSSSVTPNMLVNFLVERNIISYLGCGIQLSLVAFFGAAECFLLAAMAYDRFMAICNPLLYSTKMSTQVCILLVVASYIGGFLNASFAMVSFCSFLFCGPNIINHFFCDFAPLIELSCSDVSVYVIATSFSAGSVTMITALVIAISYSYILITILKMHSTEGRQKAFSTCTSHLTAVTLFYGTVTFIYVMPKSSFSIDQNKIVSVFYLLVIPMLNPLIYSLRNNEIKSALKKQIWRKTVS", "length": 314 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZPU6-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC134485591", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRSTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAEGIIVNKQVKGKILTKRINVRIEHIKHSKSRDSFLKRVKENDQKEKEAKEKGTWVPLKRQPAPPREAHFVRTNGKEPERLEPSPYGFMA", "length": 160 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQ96-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC102550668", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKVKRRGTRYVFSRPFRKHGVVPLVTYMRLYKKGDIVDIKGMGAAQKGMTHKCYHGKTVRVYNVTQHAVGIIVNKQVKGKILAKRINVWIEHIKHSKSRDSFLKQVKENDQKKEEAKEKGTWVQLSLQPAPPREAHFVRTNGKEPELLEPVP", "length": 155 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQD9-1", "protein_name": "Developmental pluripotency-associated protein 3-like", "gene_name": "LOC120096627", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKSSEKVDPVVNPETQMNDGSQREDEEDSPDDSEILQPETLVKVMKKLTLNPSAKPPKYHRHQRVRLRIKSQPVGNRSERIMREVQSAFPKTRVRTLLSVLKDPIARMRRFVRIEQRQRQLEGNERRDEPFRCLCTFCHYQRWDPSENAKIGQNQKN", "length": 158 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQT0-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "AABR07071101.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILCIKPSSTTKYCLNQCYLISCINKPNLLDGVNGIPLDIVAINDPFIDLNYVVYMFQYDSTHGKFNGTVKAENGKLVINGKPTTIFQERDLANIKWGDADAKYVMESTGIFTTMEKAGAHLKGGTKMVIISAPLADAPILKYDNSLKIVSNASYTTNCLAPLTKVIHDNFGIVEGLMTTVHTITATQKIVDGPSGKLWRGGHGAAQNINPETTGVAKAVGKVIPELNGKLTGIAFHVLTPNVSVVDLTCHLKKPAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSNSHSSTFDARTGIALNDNFVKLISWCDNEYGYSNRVVDLMAYMASKE", "length": 338 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZTK7-1", "protein_name": "Uncharacterized protein", "gene_name": "AABR07012426.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGDLEAKISGYTHISVQRFCYKWTISNFSFCMDGIRENITSPVFSLEGNEEVQWCLRIFPNGVDEESKDYLSVSLGLHSCPKSPVLAKVQFWIINAQGEKHQIKEIPNILSFSPKHQWGLRKFILREFLLSRRHGLLPEDQLILCCKVSVVGPSFSTPGHNMTPANKDPRQMLADDVGELWENSLFTDCSLVVAGQEFRAHKAILAARSPVFRAMFEHEMLESLTNRIEIHDIHLQVFKEMMAFIYTGKAPHLHSHSMATELLAAADMYDLQDLKVMCEDSLCRNLSVKTAVPTLMADLHSTELLKTRVMDFIILHASEVSETLEWKSMVESHPHLVEEAFGSLASMHYFFLEPSLKR", "length": 359 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZV50-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLVARSWVCHKTYVTPRRPFEKSRLDQELKLIGEYGLRNKHEVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIVVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLRLAKSIHHAHVLIRQRHIRVRKQVVNIPSFIVCLDSHKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEKKEK", "length": 195 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZWL0-1", "protein_name": "Ribosomal protein L32 like 1", "gene_name": "Rpl32l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALQPLVKLKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILKPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNLNARLRSAENE", "length": 135 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A176-1", "protein_name": "Golgi associated RAB2 interactor 5A", "gene_name": "Garin5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRLRTSARSPAPAVRMAISPSGPLGFTSPVTQPRREASPGVPTTQGRGVAMKGGRDLKPASGRADRPLAQAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDTVPEESEDEDEVEEGQLQPPEVRAGPRAQGCWARKDGKGPVSCHRGQTRPAGLRTLGALIQPRSFQITKGPEIKPAQLRAREMDF", "length": 303 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A9N2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a77d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQNNSVSEFILLGLTEDPAGQKTLFVVFLLIYIGTMVGNLLIVWTVIASPSLDSPMYFFLAYLSLIDALYSSTILPKLLIDLLCDKKTISLTACLVQLFVEHLFGGVEIFLLVFMAYDRYVAICKPLYYLTIMNQRVCVCLVVVSWIGAFAHALVQVFSVYKLPFCGPNIIDHFACDMYPLLGLACTDTYFLGLTVVGNNGAISVVVFMLLLLSYGIILNSLKTHSQEGRRKALSTCSSHIMVIVLFFVPCIFMYVRPVSNFPLDKFITVFYTVFTPMLNPLIYTLRNLEIKKSMEKLCRKIFTSDRIRISSCYS", "length": 316 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAM5-1", "protein_name": "Preferentially expressed antigen in melanoma-like", "gene_name": "Pramel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVKTPNKLLELAIHSLLNEESAAIQALEEIPRELFVPLFIAAFEGGHKNVLSAMVKVWPYYCLHIGSLSIQEPQHELLKAMIENLPVYPAPSSSSRGPKLRILDLRQDTDCRITCPEVSTKTPSCFYSCAYSDRSITKIERQLCCVNAECKTLLPRPVELLVDLSLDGSLMEKEFLVLLMYKIEESLGSLHVCCRDLQIDKLCKCKCTLKFLDLKCIDQLSVDRGSLSDITSILCRMIHLESLSLSNVTFRSLSGKVFKIFLSHLQRMEHLKELSLSSFCLKNHLDRVLRILPPGLDFLYLPFCDLSYRDFKFMSQSPQVTHLKLLNLSNNPMYWGDFEPFHTVLINLSGTLQHLEINHCLISDSAMSALIPALIRCTRLRVLGFASNPISMPMLVNIMHNLTPMKELKYVIYPIPVHCYERWHFQGSLDRQKLAIVQLQLKAMLELAHREDMNWITYCE", "length": 461 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAN9-1", "protein_name": "Similar to human chromosome 6 open reading frame 52", "gene_name": "C17h6orf52", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGSTLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREELYDSLMNRRWHCLDTVLSNVPDELPQCEVF", "length": 157 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ABB6-1", "protein_name": "Olfactory receptor", "gene_name": "Or13a27c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VNCIWHSKMVSPNQTVVTEFVLQGFSEHPSLRLFLTGCFMSLYTIALMGNIVIIALVTSSTGLHSPMYFFLCNLATMDIICTSSVLPKALVGLLSEENTISFKGCMTQLFFLVWSGSSELLLLTVMAYDRYVAICAPLHYSSRMSPQLCGALAMGVWSICAANASMHTGLMARLSFCGPKVITHFFCEIPPLLLLSCSPTYVNSIMTLIADAIYGGINFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVAMYYSSVFFAYISPGSSYNPERSKFTSVLYSVLSPTLNPLIYTLRNKDVKLALGRILASFSH", "length": 318 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ADX2-1", "protein_name": "Olfactory receptor family 4 subfamily A member 80", "gene_name": "Or4a80", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQSKIVTEFVLLGFTQDPAGQKALFVMFSLMYIATMVGNLLIVGTVIVSPSLGSPMYFFLASLSLMDAVYSTAISPKLIVDLLREKKTISFRACISQLFIEHLFGGVDIVILVAMAYDCYVAICKPLHYLIIMNRRVCILFLVMAWAGGFAHALFQVLAVYNLPFCGPNIIDHFGCDIYPLLLLACTDTYLIGLTIIANGGAMCIVIFILLLLSYAIILRSLQNHSQEGRHKALSTCSSHITVFFLFFVPCILMYVRPVSSFPIDKSITVIYTVVTPVLNPLIYTLRNSEMKNSMEKLLQKILSPNRLRLLCCLYY", "length": 317 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AEJ6-1", "protein_name": "Peroxisomal biogenesis factor 11 gamma", "gene_name": "Pex11g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLNGLASALESYRGRDRLVRGSVGPWRDRSDLEFGQDSEMRKTGQRGGPKGTDIGRLVSYMRTSYLSLPNCWPYKCVLALQIRTLGYGCQLIGGVLVEQCPSRSEVGRRLLVVSAQLSHCRTVLRLFDDLAMFVYTKQYGLGAEEEDVFIRWLSVLSNMADQLYYPCEHVAWAADAKVLQVDSARWWTLSTAFWSLSLLLGAVKSLWTMLKLRQKLRSPTGHFASQLPRSKWRAVEARIWSEALTLLSNLADLANAVHWLPPGVLWAGCFPPWLVGLMGTISSILSVYQAARAGKQAEVDSP", "length": 304 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D6R901-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 21", "gene_name": "USP17L21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E0CXP6-1", "protein_name": "UMAP1-MVP12 associated (UMA) domain containing 1", "gene_name": "Umad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL", "length": 133 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E0CZF1-1", "protein_name": "PRAME like 34", "gene_name": "Pramel34", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRHTNLLKAMVAAWPFPCLPVGPLMKKPNLETLQALLDGIDMRLTREFHPRRAKLQVLDMRNMYHAFWNIRADANDSDCKSKTLDEKQLVKVLPRYARRQRLKVIVNLSISSHFNKSKAYFLNWAKQRIGSLYFCCIKMRIWDPPDQVIRDIFNVFDPEHITELELNTDWTLLQLAHFASYFGHMKNLQKVFLAPLHKNTSPIINITNATEAKCVHKIISQFSQFNCLQHIFMKHVHFLRDYMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALDLMPLRVLLEKVADTLEILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTLKALFQHTANWSKMNVEQYPAPLQCYSELGHVSVERFVQLCQELMYTLRAIRQPKSISFATDNCQKCGKPCVYDQGPILCSCFQ", "length": 475 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1B8K9-1", "protein_name": "40S ribosomal protein S6", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLNISFPATGCQKVIEVDDERKLRTFYEKRMATEVAADTLGEEWKGHVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKCKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPHRLGPKRASRIRKLFNLSKEDDVRQYVVRNSLNKDGKKPRTKAPKIQRLMTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK", "length": 249 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BBD9-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "LOC112445820", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFLPLRLAVVCSSNQNRSMEAHNILSKRGFSILSFGTGTNMKLPGPARDRPNVYDFRAMYDDVYKDLLRKDKERYMQNGVLRMLERNMEKEMPRPERFQECKDLFDLILTCEERVYDQVVEDMNSGEQETCQPVHVINVNILDTNKEATLGAFLICDLCQCVQLMGDMEDRIGELLQAFEEKSGRSFLHTVCFY", "length": 195 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BLY1-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLSSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F638-1", "protein_name": "Moesin b", "gene_name": "msnb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSINVRVTTMDAELEFAIQSSTTGKQLFDQVVKTIGLREIWYFGLQYQDSKGFSTWLKLNKRVTAQDVRKENPLLIKFRAKFYPEDVAEELIQEATQRLFFLQVKEAILNDDIYCPPETAVLLASYAVQMKHSDYNSEHHIPGYLCRDKLLPQRVLEQHKLTKEQWEQRIQVWHEQHKSMSREDAMIEYLKISQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYERSDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKSPDFVFYAPRLRINKRILALCMGNHDLYMRRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLRQIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTKNKDNLATELAELTSKINLLEDAKKKKEDEARKWQRRAIMVEVDLEKTKEELKSKLIGVHIQATSQTENDHDENDESSAEASAELTSTGSFRDRSEEQRITETEKNEPLQKRLQALSSELADARDDSKKTANDLIHAENVRLGRDKYKTLRQIRQGNTKQRIDEFESM", "length": 577 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FA22-1", "protein_name": "Protein tyrosine phosphatase type IVA 3", "gene_name": "ptp4a3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAWLNGLYPVEVCYNSMRFVITHNPTNQTLDTFIEDLKRYDAKTVVRVCESTYDKTPLEKHGITVMDWPFDDGAPPPTKIVDDWISLLKKSFSEDPGCCVAVHCVAGLGRAPVLVAVALIEGGMKYEEAIHLIRLKRHGAFNSKQLTYLEKYRSKKRLRFKDPFKHRSKCWLM", "length": 173 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE27-1", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase", "gene_name": "b4galnt4b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMRFPLKKIRKQFKLLLLLVLLMFAIGFTYLHINQGKAIKLHFNYGKDMERQAEGIGSSPKKHLSSSINPFEHGDAADSQEDGWGGEELNESAQESRANAEMHTLLAQKFLGLPWKPEYKGQANLHVFEDWCGSSVSQLRKNLHFPLYPHTRTTVKKIAVAPKWKNYGLRVFGFIHPYKDGDFQFAIASDDNSELWLSSDESPLNARLLVYVGQHGSEWTAPGEFSKFRSQTSKPVRLMSSRRYYFEVLHKQDDRGSDHVEVGWRPFLPGQKFDVIDSAYISLYTDESSLKMNSVHHIPQTLASHSLALQIYHRTETHTADMLKPDPRDTFYKIPMIDQSRLENVLPSCVYSPTYVVKDFPIARYQGLQFVYLSYVYPNDFTRLTHMEKTNKCFYRESPVYLEKFGFYKYMKMDEEEDDQPVFFPKPDDFLEEEEGVDPEEAINSSNRPVKRSGPSYQTSRITAATASSKPDRLDGGSKSSVFQQEKQYVQFKEQERSKKRTKGERFYRHSQVVDDEMTEIRQVKGSTGVLESQSGSLNEQTGPSEENGDSQTLSLVQRGRSLAWVLPDPALQSESKLIETASPTVKERSPFKLPHLYVLANRILGNAGKPVVEKESNSNKIYITRPRPPVSRPKPPVEVFPGVFLYQSRKSKRLVDLSSKWRSLKTQAAASAPWANFPLMDHKTSTQSALLKQSHLSSPTEPGPHNKGDPTASISDPDSVPPSSSEKRDHPGLNSSSQPPEEEPTKISEMAEGLDVAPQSRGLEEGEMSEYSYEEAEVRPHLAEEAINWQRTFSVNPVDFELLRSDWNDLRCNVSGNLQLAENEVIDVISQFMERLNERNRGIYTLARIVNVEKRRDSARGNRYLVELLLMEGGKRLVRLSEYIYLLLHRSRFEEGIESREGTVPSSHRTPSKIPLPSGSSAQTHTTTPWSTSWAKPLLCQPIMLQWRHDVMVHFVVPVKNQARWVQQFISDMELLHRETKDENFSVIIVDFQSDDMDVEQALKESTVPRYEYLKREGNFERSSGLQMGVDTIEDSHSIVFLCDLHIHFPHNILESIRKHCVEGRLAFAPIVMRLDCGSSPLEPDGFWEVNGFGLFGIYKSDFDKIGGMNTEEFKDHWGGEDWELLDRVLQNGLEVERLRLRNFYHYFHSKRGMWNVPVKRASQG", "length": 1167 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFR8-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "uqcc5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRKSQNLKYMLSLVPGKKRFGVYRFLPVFFCIGGVMEWIMINVRIGRETFYDVYRRKQSERAYQQKTEEGLIMLTDSQAK", "length": 81 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9PUW9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r143", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PUZ0-1", "protein_name": "Apolipoprotein L 11b", "gene_name": "Apol11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWNEISEDIRKVECRTFEKVIDNATEDLITDLRSLITEDGAWNGFVEAVELSSEEGEALRDALKERLAQDPTDENDRPQREQQKERFLREFPQLKKKLEDHIRKLRDLADKFDQVHKDCTISNVVSTSASAASGVLALLGLVLSTVTAGASLALSASSVALGATSSVSSFTTTVVEDSMTLSYESEARNLIGASMNVLEEILSIMPKITCKFYNTVADLVKAFKTLKGQIQTIRRARSISRRGAQARNLTSTGRSSGQGVSQMTRGARIRAGVFTSVFLGWDVYDLVTKQRICMMGEKQSQVEHCGTWLASWRRTFRNLSRSTMLCSQTCLSDALP", "length": 337 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PV04-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "Eif4a3l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI", "length": 411 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVP9-1", "protein_name": "Predicted gene 4884", "gene_name": "Gm4884", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSENLQSSPFFGTESTLHPSLPLLSNSKQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMVVQMETSLGLPPSGQTYCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSQFLALPPAPSLEQPENKTMPEIKEGTKENQDTPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENEIGSSFDFKDITRFGADIQLPQLLNTLTDIDQDQSCENWRVTSGLFDQVRENKHKSFELLEGAPQAKFQHWDLVEGEGAVGVAGASDRAIDNMAKHPEGKAPKGPPSKNRRARKQEQERPSGPENKSKKTQELKQSRNRVKAEKEPSIPKTKRKRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKSEKKTGISSFRGLRTFTSNKDSGPGSVTTTVLNMPCESQGPPKSPGKVQSAESSVGKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPTAVYPVQHHSHSVQPTTLRPAQPPPASSSLIASAKPAPPISSSATGPNVTNPNQSSAVPQLATSRPVPYRASSHTSFQRELVSAARNKVPSPPRPVPYRASSNTSFQRELVSAARNKVPSPPKPQTQYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRRSQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM", "length": 694 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVW0-1", "protein_name": "Major urinary protein 8", "gene_name": "Mup8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCVGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKVHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNAMDLVPEHVLVLTRQIAASRPENEEWPEPPVLSGDFSPGLHHHPFLSIQHPQYKFCDLHSILSH", "length": 235 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVZ7-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKYFCLPRFSIISMLTGNGSFVTEFVLAGLTDRPELQLPLFYLFLIIYTVTVVGNLGLIILIGLNPHLYTPMYYFLFNLSFIDLCYSSVSSPKMLMNFVFEKNSISYEGCMTQLFFFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSPQVCSMLSFASYGMAFAGASAHTGCMLRLIFCNANVINFYLCDILPLLQLSCTSTYVNEVVVLIVVGINITVPSFTILISYVFILANILNIKSTQGRSKAFSTCSSHIMAISLFFGSGAFMYLNHSGSMNQGKISSVFYTNVVPMFNPLIYSLRNKDVKIALKKVMMRVHSRFIS", "length": 325 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW18-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r257", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW59-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b50", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALANGSFVTEFILLGLTDQPDLQMPLFLIFLIIYLITAFGNLTLIILIVLNSHLHTPMYFFLFNLSFIDLCYSSLITPKMLMNFVLEKNIISYMGCMTQFYFFGFFAISECYVLTAMAYDRYVAICNPLLYSVAMSPKMCSYFILGSYFMGFSGAMIHTGCVMRLTFCDGNTINHYFCDLLPLLQLSCTSTYVNEIELFIVTGKDIIVPTVIIFASYGFILSNILKIRSTSGRSKAFSTCSSHIIAVSMFFGSSAFMYLKPSSAVSMNEAKFSSIFYSIVVPMMNPLIYSLRNKDVKVGLKKTLSRMFSHNLISL", "length": 316 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXC3-1", "protein_name": "Cytochrome P450, family 2, subfamily c, polypeptide 69", "gene_name": "Cyp2c69", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPFVVLVLCLSFMLLLSLWRQRSARRNLPPGPTPLPIIGNYHLIDMKDIGQCLTNFSKTYGPVFTLYFGSQPIVVLHGYEAIKEALIDHGEVFSGRGSFPFFDKVSKGKGIGFSHGNVWKATRVFTVNTLRNLAMGKRTIENKVQEEAQWLMKELKKTNGSPCDPQFIIGCAPCNVICSIVFQNRFDYKDKDFLSLIGKVNECTEILSSPGCQIFNAVPILIDYCPGRHNKFFKNHTWIKSYLLEKIKEHEESLDVTNPRDFIDYFLIQRRQDKGIEHMEYTIEHLATLVTDLVFGGTETLSSTMRFALLLLMKHTHITAKVQEEIDNVIGRHRSPCMQDRKHMPYTNAMVHEVQRYVDLGPTSLVHEVTCDTKFRNYFIPKGTQVMTSLSSVLHDSTEFPNPEVFDPGHFLDDNGNFKKSDYFVPFSAGKRICVGESLARMELFLFLTTILQNFKLKPLVDPKDIDTTPKYSGFSKIPPKFQMCFIPVE", "length": 491 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXM9-1", "protein_name": "F-box and WD-40 domain protein 24", "gene_name": "Fbxw24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLSSFPMMEIFSYLDAYSLLQVAQVNKNWNALASNDFLWRKLCQERWLFCDMVTLQLLGKETWKQFFVYRTWQEHVKSRAIPEDFTYKEIPLECGVRGYAGYISGCALTRNGQGKSVVCMVSSKNKISTWDISESVITWVSPVQPASIKLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFRIPDLHLISTVNVFPCGFDKIDCSPQKKWVLLSQNHPCIYPKVFYMSSLLRTSEFSDPVSTVLEFSLCKRAFWTPRREDRITLMSRRGRPIVTRFETFDMKLEENGNKTIVKGDLVASFSLQDYNENPKWMGVSDKSVIVCSTGSSLLLFSMKGLHLQTFQYSPEMIVRLWVDPVHVIITCNDGSIDVYMWEERSLLLKMCYRLQNGRHLPPFGFIKNLLCDDVSIVQLMIDRQGPCFLMAYTLNICS", "length": 466 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q069-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r157", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCHFEVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q0V3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r68", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVAIIKENQTQSKMDFWNMGIKILFLSQTTTGILGNFSLIIYYVVNYIVHTLKPTDLILMHLMTSNALMVLSTGVLHTMAAFGLAHLLNDLGCRLILYIQRVGRSTSIGTICLLSIFQAITISHRVSCYKGQKIKSSKYIGYSISLLWVLHMFLNFILFVDIFIKRNRNNMTSDRDFKYYSIVERNEFSDSLYVALVVCPEIFSSVLITCSSGSMIGILYRHKQRVQHIRSFHVSSRNSPEWRATQNILVLVSTFLAFYTLSSVLQGCIALLNNPNWWLVNITRLTSLCFPTFAPCVLMSHYSFMPRFSLVWTWNKTS", "length": 319 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1C7-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A2", "gene_name": "Speer4a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWMGETREGRKDADLPSKSNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHNLEMENMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIHQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 252 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1N7-1", "protein_name": "Predicted gene 8126", "gene_name": "Gm8126", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNRNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKITQSINDTIEKYKEFIEDKDSYSFMHTYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEENRFCHESSKNIHPKY", "length": 198 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q328-1", "protein_name": "RIKEN cDNA 5430401F13 gene", "gene_name": "5430401F13Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSRILLVLLSIALLALTSAQRVNEDDGSALQEEDALEIGDSNQQHDDIHERLNEIKNHFQDQISQHGKEAIKSKKGKNGPRSRRSSDDDNLEVQDHQSGNEQAGGGQGGRGRSELKGQNGKGSQKGKKGKGGQQEQKGKGGQQKQKGKGGQKTKRGKGGQRSQQDNVQEVYQE", "length": 175 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q346-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSKLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q366-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4f2", "gene_name": "Speer4f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTMCVRLRRLFQRANVDGRETREGSMDAGLPCERNEGRRRWTWRMWMAHRQTSSPVPVTSNQFEKEEEELMEEIQLISQEKNGLRDYLNLTLGSKITRLNQSYEELKLKQKELMTLQHDLEMATMEAREENEELKKEINFYSNLHSRALMENNLIKKKLMTLQQESKEVQAEWASIQQHLDVNLSGKDEQENNSILDTQEHQVSETARELGLATDQEDSILQDELPPQEAPAEELSPQEAPAEELPPQEAPAEQLPPQEGPAEELPPQESPAEHHLQHPQSFSDESSYITYPEWE", "length": 295 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q3G0-1", "protein_name": "Zinc finger and SCAN domain containing 4B", "gene_name": "Zscan4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPIPDNAQMPVDTTQDRLLATGQENSENECNTSCNATEVNVGESCSGNEKDSLLITQKEQNHEHEEGNVVCQFPRGARRASQDTSSHHVDFPSALTPADVPMEEQPMDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKTDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQPISDPVLGKNHEANLPCESHQKRFHRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCITCQKIFKRVSDLRTHEIIHMSEKPFKCSTCEKSFSHKTNLKYHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 505 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q4E0-1", "protein_name": "RIKEN cDNA 5031410I06 gene", "gene_name": "5031410I06Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q501-1", "protein_name": "Predicted gene 2237", "gene_name": "Gm2237", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENVDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSPAESRTWH", "length": 211 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q5G7-1", "protein_name": "Oogenesin-1", "gene_name": "Oog1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPLECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVELL", "length": 496 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q6D7-1", "protein_name": "RIKEN cDNA 1700024B05 gene", "gene_name": "1700024B05Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESHDNPVSAGRTSSQNCNITNHMKNMNKLDDMKFYIRKINAELEELFRILDIDMNTDLNYRMNTEFTIIKSQHEKTMLDMEKMKQSISDSIDKYKEFIEDNDSYSIRHTHLLKECNQLKEKVRMLLNENRKLLVEQADQEASFGEEKSSVMRPARTYIPSAKQQQL", "length": 167 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q7M8-1", "protein_name": "Predicted gene 5796", "gene_name": "Gm5796", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQSGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8A4-1", "protein_name": "F-box and WD-40 domain protein 28", "gene_name": "Fbxw28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQIAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLSVCS", "length": 466 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8I6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDLVPKNPPTDLKCKLAHFFHMVARGTNMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVRYSCYSCWLFSVLNNAYIPMNVRGPKKSHNDSDSQGKRMCSISVVNVDMNYLQFSYDIIFIGIMVWTSVSMVIHLNRHHQRMHYIHNPNQSNRGHAETRAAHTILMLVVTFVSLYILNCICVLFHVSFVESRRWLRNVIEFLALSFPTISPLLLIFRDPRGPCSLYFNVGLEIHVTGKVITEEQ", "length": 310 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8L6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r132", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8T0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQTGLGVLANTVLLFFYVFIILGHRPKPTDLISCQLSFVHIMVVLIGGDILLADIFESLNIGNDFKCKTTFYLFRVMRGLSICITCLLSVFQAVTISPNTSVLAKFKQKVKKYMTHVFLCIWFFNLSFSTNQIFYVGGFTNVSETNQMQVTKSCSLLPMNYIIRGLIFTISISRDVFLVGVMLTTSVYMVIFLFRHQRQCKHLHSFSHPRESPEKRATQTIMLLVSFFVVLYWMDFIISFTSEMLRMYDPVILTLQKFMMYAYPTITPLVQISSDNRIIIMLKNIQSKCHPSFSLKDFFFFI", "length": 311 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8V7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r173", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALNKALKTTEEVALQIILLCQVGIAAVANILLLVHNLSPNFAGPQLRPKHVILAHITVGNLLIILLTGFPSNIIVFVPRNPLNDLNCKLEYFIRLVARSANMCTTCVLSTYQFIVLVPGKWSRMILRGNTSTFVHYSCNSCWIISVLNNVYIPIKISGPWNTDNDTDLNSKWVCSMSGFELVMVFLRFVHDTMFISIMVWTSVSMMLLLYRHHQSLKHIHRSNGSLGLQPEARAAYTILMLVVTFVCFYLLDCMCIFFHISFVHFRVWLRHVNEILAASFPTLSPLMLIFRGPKKISAKGINTENAFINSH", "length": 313 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9N3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r152", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFASKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFGSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAETRATHTILMLVVTFVRFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QAN3-1", "protein_name": "Predicted gene 1979", "gene_name": "Gm1979", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPPESNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QD93-1", "protein_name": "Granzyme K", "gene_name": "gzma", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDICRNLIVFHFLVFTFFKVTVCSDVSIVGGKDVKKALSWMVSIQVNQNHKCGGILIHKEWVLTAAHCKEDSYSSVTVLIGSLSLSKGSQRIAIHNYEIPETFNKKTKKDDIMLIRLSKKVKAKPYKIPKKEKDVQPGTKCVVRGWGTTDYKGKQASDKLQMLEVLVVDRVQCNRYYNRNPVITKDMLCAGNTQQHRGTCLGDSGGPLECEKNLVGVLSGSHGCGDPKKPTVYTLLSKRHITWINKILKQQFNSTRF", "length": 257 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QLQ1-1", "protein_name": "Defensin, alpha, 35", "gene_name": "Defa35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHDELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LPT0-1", "protein_name": "Gap junction protein", "gene_name": "Gjc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCCSFLRQLLARESQHSTPVGRFLLPVLVGFRLLILVSSGPGVFGNDENEFMCHLGQPGCKTICYDVFRPLSPLRFWAFQVILMAVPSAIYVAFTLYHVIGYWEVPGRNKEQEAQICKGGRCKDVSGAMSLKLLWAYVAHLGVRLVLEGAALGVQYHLYGFKMPSTFICREDPCIGSTTCFQSHPSEKTILLNTMFGISGACLLFIFLELVLLGLGRVWKTYRHKLPLFKNLSTSERSVRHKDTTDDLSVVETKEPF", "length": 257 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LT33-1", "protein_name": "Cytochrome P450", "gene_name": "Cyp2b14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVFLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFIDTYLLHMEKEKSNHHTEFHHQNLVISVLSLFFAGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVISSHRLPTLDDRIKMPYTDAVIHEIQRFADLAPIGLPHRVTKDTMFRGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDANGTLKKSEAFLPFSTGKRTCLGEGIARNELFIFFTALLQNFSLASPVAPEDIDLTPINSGAGKIPSPYQINFLSRCVG", "length": 495 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LYQ4-1", "protein_name": "Alpha-1-B glycoprotein like 1", "gene_name": "A1bgl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLLVLLEPLASLTLTCKVCEPSKDLHRILHLSSMETACTLSLALPPTLPSASLIFSASGVHTLILLRVRLNHSLILLSLIHTGPLPRPWLSANPVPWITPGLRTFLLCQGTVRDVVFMLRREGDDGNKEKEQGIFQVHEPGNYSCNYYTNTEYTPSKPSGTVTIKEYVIPPPPMLTSLESSTVDEPEMTQMSLLCVAPLSDVEFQLRQGEREMKVLIVSTSPERASFYLKLSDMGDHSPFTCRYRLNRMTAWSEDSKPVQLMWSDETLPEPVLTVEPSPHQSFEPGSTVQFRCTAPKAGLRSEAGLRFGLHLEDLYDHRLLQTQKSSGNETVFQLRNVSATDSASYSCIYTELTPPYSGSAPSDFVILRVNGPPPPPKLQALWTGKVFAGHDVVLRCQSDVTGVIVELLRDGKFVPYRILRVLNNYSDLGLHSVGPQHTGNYTCRYTSWLPEPVQSEPSNPVELLVEGMASGVVVVGFCLLIFPGLCILVNCAI", "length": 495 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M6N1-1", "protein_name": "Zinc finger protein 945 like 1", "gene_name": "Zfp945l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTASLVNVSKCLLTFRDVAVEFSMEEWECLNYSQKTLYRDVMMENYNNLLFVENHCKYKKVLDQDPNSIVHNVNIYEKAYECNELVKMTHESSQGTPFKTKHKDASLQISTLNRQKIGNTRDEPCKFKDCINFLNVFVIRQNQRIYIGEKEPTTIEYENHYNSKHEVMLKQSNSTGNKPHIFRKYGQCFKIYSSFSRYQNDHTSEKFYKCIKCRKSFLHLSQLKVHYKIHYRKYPCKCTACSKCFYHTFGFKRHYSIHPEVNTYKSSDCDKSFIYYSSLRKHQKIFGGERHYECNEGLRSLYTVFQPVYYYIPHIGEKAYKCSECEKCFTRKYHLTVHQRIHTGEKPYKCGECDKCFTRKYHLTDHQRIHTGEKPYKCSECKKCFTRKYHLTDHQRIHTVEKPYKCSECGMSFMKKYHLRSHQSIHTGEKPYNCSECDKGFTYKGHLRRHQKIHTGEKPYKCSECAKCFTENSKLRRHQRIHTGENLYKCSECDRCFIENNKLRSHQKVHIGEKPYKYSEYDKCLTQKGSLRSHQLIHTGEKPY", "length": 544 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M7A9-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "AABR07026048.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRLAHRPIQWRNFLSQDSLDQDTMRKKTILSNQTVDIPENVDITLKGRTAIVEGPRGTLRRDFNHINVELSLLGKKEKRLRVDKWWGNGKELATVRTICSHVQNVIKGVTLGFCYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVWMRTNVACSVSQAQKDELILEGNDIELVSNSAALIQQGTTVKNKDISKFLDGIYVSEKGTVQQADE", "length": 219 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M9J5-1", "protein_name": "Uncharacterized protein", "gene_name": "Esp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ITFLPVTLFLIILLWPSMITEGRVLTQNQKELSISADHNKNHKSDLDKIEFQGQPNIQKAVEMTICASDKDQTLLEDQANANQDKQLYKDSHLLCGRSLDHIVK", "length": 104 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QDL3-1", "protein_name": "Novel nacht domain containing protein", "gene_name": "LOC560232", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKHTPGDLDLSTGCSSVHQNRAEAEPSCVSMKSDVSMDPPTNFKSGNTGPAVSSRKRKRAEAEPSCVSMKSDASMDPPLKFKSKNTQPAVSVDRDDQSGDLLQDSLQPEHDELQRVKEQHKTTMKNKHERLFEGINHGETQTLLNRIYTQLYIIEGESEGVNEEHEVIQMEKRARTKPSQHTPVYCNDIFKASAGAGHEVKIKKEKAQIKTVLTKGIAGIGKTVSVQKFILDWAEGKANQDVDFMFVLPFRELNLIRDHQYSLHRLLLDFHPELEDLEPKIYEQCRVVFIFDGLDESRITLNFSDEEKVCAVTESSSVAVLMWSLLKGDLLPSALIWITSRPAAAHQIPSRYIKRLTEIQGFTEPQKEEYFRKRISDEHQASRIISHIRRARSLQIMCHIPVFCWISSTVLQKLLEEDVSAEIPQTLTEMYIHFLLIQINMRKQKYEERDPEKLLQSNRGVILKLAEVAFRQLMKGNVMFYEEDLIESGIDVTDALVYSGICTEIFKEESVIQQRKVYSFIHLSFQEFLAAFFVFYCHLTKKRELLELILGYSYDQYLQSSSEKSLYDLLSSAVDEAVRSSNGHLDLFLRFLLGVSLESNQRLFQDLLTHTEESSESIRRITQYIKDQIKSDDYFKRAAERFINLFLCLLEVKDQTLAREIQEFVKSDKHSEEELSPAHCSTISYMIEMSEEPLDEFELQKFNTSAEGRLRLTTAVRNCRRAL", "length": 725 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QGM0-1", "protein_name": "Galectin", "gene_name": "lgals1l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTVLIQNMAFKVGQTLTLTGVPKPESPEFTIDIGNSSEDIALHINPRFDAHGDQCIIVCNTFQNDCWCEEHRDENFPFVQGEEFQIKITFTNEEFLVTLPDGSEINFPNRQGSEKYKYMNFTGQARIQGIEIK", "length": 134 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QMQ9-1", "protein_name": "Uncharacterized protein LOC541480", "gene_name": "si:ch1073-398c20.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADIKQESDDIRIAEVFTLKQEDPEEQTDLLPLRKEFQGLDNVKEEEALVEEHQDITPAEKRITCSETENTTQKASEKTGSRSSFTCEQCGRDFAKQGTLNNHMRIHTGEKSFTCQQCGKGFTQKRTLRNHIRFHIEAESLSCQQCGESFTQKQDLTDHMRVHTGEKSFVCDQCGKVFLRKDGLEKHLKNHHKEKPHVCPCGKSFTDKTKLEEHTKTHTGEKPHTCDKCDECFSGKYDLIRHMRFHSAETPYICQQCGKSFALKRVLMTHVKIHTRDRPFLCKQCGKCFYRKDNFNRHVRVHTGEKPYACSECGKSFSERFQFNEHSRTHSGVKRFSCEQCGRGFNRKTELKRHMRVHTGEKPYMCPQCGKTYAFKTGFDIHMLHHNAEMPYICPQCGERFSVKQRFDVHMKIHAGNSDK", "length": 420 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1Q6-1", "protein_name": "Uncharacterized protein LOC641576", "gene_name": "zgc:152710", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLIWTQFGVKHKNVKCKVRVIHGEEGSWSSEEVREEPEVSSPPPSPECVDYYSVLGVSNDSNEEEIRKAYKRLALRYHPDKNSDADAEDKFKQIAQAYDVLTDPEKRNIYDQQGLTKGGVAPTCNKTDPSHNSKADAHSWHMFFNFDLDSDDDLFNPFTRNPLPHLSRHHGNKGGLKPAGDAEVHDLSVSLEDILMGVTKRVKLTRLRQTDKHTLKPEERVFDVEVKKGWKEGTRITFPNEGHQMLGHAPNDLAFVIKEKKHAHFRRDGSHIVYTCTITLREALCGCTVNVPTLDGQMKPLPCSDVIKPSSVRRLIGEGLPRAKNPAQRGDLLVEFQVVFPDRIPPSSKEIIKHSLGQC", "length": 360 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RA39-5", "protein_name": "[F-actin]-monooxygenase mical2b", "gene_name": "mical2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGETEEERTSQAGQLFENFIQATTCKGTLQAFSVLCRQLELNPSDHRGFYSSLKTAVTFWKAKGLWGKLDKRAGHKEYSKGRACADTRCLIIGGGPCGFRTAIELALLGAKVVVIEKRDTFSRNNVLHLWPYTIHDLRNLGAKKFYGKFCAGSIDHISIRQLQLMLLKIALIVGVEVHVNVEFVKLLEPPEDQSTDGQGWRAEIRPADNPVSDYEFDVIIGADGRRSTLDGFRRKEFRGKLAIAITANFVNRNTTAEAKVEEISGVAFIFNQKFFLELKEETGIDLENIVYYKDNTHYFVMTAKKQSLLDKGVIINDYIETERLLAFDNVNQEALLSYAREAADFGTNYQLPSLDYAINHYGQPDVAMFDFTCMYASENAALVREKSHRQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMIKGWAQGKEPLDLLSERESIYRLLPQTTAENISKNFEQYTIDPATRYPNLNSSCVRPHQVRHLFISGEQDLSSLERSGQTRRSVSISRRESEVRPGRLLLWCQNQTQDYRGVNVTDLNTSWRSGLALCALIHRQRPELIDFDSLNEADCAKNNQLAFDVAEREFGIQPVTTGKEMDAERGPDKLIMVLYLSKFYEMFHKSTQSVTGLPKEIDANNGDCSSKTANSLYNSINHARKRIPKLDKKLEESDVNRKRKKASSHHEELMSCQTAPPAGEREEQKENKVRSMATQLLARFEENAPSCALRRQSDSESDSDADRPVSLDLTENPRFARPKIEPTHPSTTPDKAKWQPSPYLRLLESNTRSETLHTEHYVESQSSHRLTEIQSECQYSSVSSAYKSSERRPRSPLIPFTPTLSPMMHCLQQLEEQVIQQRKREPLNRKSIKERAQKLSSLFTGNPAQPQTDESSPAVSPSSPPQTIPESSTLSCLLSPAPSLTHKQCSEASETHLKADKHTEIRRVERLDPSKQRTVGKVSSAIGVKAATLAILYETDHRPNNPITLSLTEARRCAESGLVSVRKEFSASLGGSDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQRKTSTRHRRGEIQDGGIRSSSITISNHTSTDGTRGQPSGGEFDSSTQQDLQTLPDSKEIISVSEVKDSSKKADPADSAPACPDSPLQKVKRSTAKGEITNKNILWKKKIRSTLPLVLMKKFHRGKPEDKTEVLAEEDGNSDFEEIHESLSSKKPSNPSTDSNCLPTKDNSSTPLDEIPKIPLYRTHVLPEYPKPSSSSPEPIVTSISSDPISFSPKKKLTLSLSEKEKLLNWDLTNPGKSGAEEQQQQHVKPSISLQHDHPEPTHPQPEPAPPLFGFQQWANNLRKSFSKGSNPVVLRRNRPMKARPLSEGSFNVGAVFQDEERCGSLVDEGEARPRTESEIASLLEQVALGSKTSRGTKDDMASLPPRKLNFFSSLRIKRVEGAEQSRGEGQKDILSILSRFRNKASAQQQQQQKSNSSSEDEQEPKLTHSGALQKKKEKIAIRQTKSDELKRLHRAQVIQRQLEEVEEKQRSLEEKGVALEKVLRGENGDDGSTDEAALLQTWFKLVLEKNKLSRYESELMIFAQELELEDTQSRLQQDLRRRMATEDCEKSASELVEEQNILVEIMKVVEKRDKLVSLLEEQRLKEKAEDRDLESLILSRGYQFHWT", "length": 1679 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RXL1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152495", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFTICNDSHSDFILLGFSDKPYLEKILFWVVLIFYCLTIIGNLVIILVSLKDPKLHIPMYYFLSNLSLLDLCFTSSCVPQMLVNFGGPEKTISYIGCAIQLYVFLWLGATECVLLVVMAVDRYVAVCHPLQYTTIMHPKLCLELAILAWGTGLIQSLTQSPATLQLPFCSNRRLYDIVCEVPALIQVSSADTIYNEIQMSIASIILLVVPLVIILSSYGAITKALLRVKSTEGQKKAFGTCTSHLLVVFLFYGTVTAVYLQPKSHYAHEQGKFLTLFYTVITPTLNPLIYTLRNKEVKGALIRLGKKTWDDLCWTIA", "length": 317 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD0-1", "protein_name": "Transcription elongation factor A like 3", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRQVKHLRSGSLPTPGLSVTSPSPTARPATPRTACLFPALCKTRKGEGTCPESLQDKKRRKNLNMEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 264 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "LLVVVLVTYLLTLVGNTVIILIASIDPNLKTPMYFFLTHLSLVDICLTTSIVPQLLWNLRGPAKTITTLGCAVQLYVSLALGSTECVLLAVMAFDRHAAICKPLHYAAVMNPRLCQALAGVAWLSGVGNALIQSTVTLWLPRCGHRRLHHFFCEVPSMIKLACVDIHTNEVQLFIASLVLLLLPLALILTSYGHIVKAVTRIKSVQAWRKALGTCGSHVMVVSLFYGTITAVYIQPNSSYAHTSGKFISLIYTVLTPTLNPLIYTLRNKDVKGAMRRLFRRDLGS", "length": 285 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S4M2-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSLVILEKFQHILRVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVEHVITIMQNPGQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLHEDVERLKKIRAHRGLRHFWGLRVGGQHTKTTGRRGHTVGVSKKK", "length": 152 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S6C0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNCLTPHTSEDLLVPASATHLGGRRRRARSRERRPRDQVPGWAPAAPLVQEEQVRVPQRISQIQCLPKGVYKRDGSQEKMEQEECAICTLDFVCGDPIRSLPCKHFYHLGCIDEWLTRSFTCPYCRGPADGPQPSSRDTP", "length": 141 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7I2-1", "protein_name": "Beta-defensin", "gene_name": "DEFB125", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MNLLLTFMICGLLTLVTKAGWNVERCWSYNIGHCRRRCLHLERYKHLCMNKRACCIPLSSDDPYTQWPLPPEDQTVGMKTPYFRPVSPGSELDDQITITITVDQESTGTEQDIEGTAISFQASTPIPENIEDTKFSDKANTLNLHKL", "length": 147 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7N4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152708", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDQTNSSVVTEFVLVGLTQSLGMQFLLFLLFSTFYVGIILGNLFIVFTVISDSHLHSPMYILLANLSLIDLGLSSTTVPRMISDLFSDCKTISFHNCMIQMFFIHVTGGVEMVLLIAIAYDRYTAICKPLHYLTIMNPQMCMLLVVAAWITGVTHAVFQFAFVINLPFCGPNNVGSFYCDFPRVIKLACIDNYGLEFVVTANSGFLSTGTFFLLVVSYIFILVTVRQHSSKDLSKAFFTLSTHITVVFLFFLPCMFLYVWPFPTKSLDTFLAIVDFAVTPVLNPAIYTLRNRDMKVEMRRLSRQVISSREMT", "length": 312 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBB9-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MHALPAFESFLLFKDEKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEALLNVITDLISKLSLLEERLRVAIKDKQEGIECWTGRGPAWPGPALTLALLQAPCG", "length": 140 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBV4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100154723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESENITVVTEFIFVGLTQSRNIQLLVFVLVFIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNPRACYALSLAQWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPGIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKKLLINN", "length": 305 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SJ79-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259717", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTKGTEFILLGFAGQHKSWPVLFIVFLVTYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLEEKVDLCYATAITPKMLQNFVWTEHSISFIGCMVQLLTYGAFATSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLVIGSYFMGFLNASVNTSFTFQLNFCKSNKINHFFCDAPPILALSCSSIYFSIMLLAAFVGFNLTCTVSVVIFSYVFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 310 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SLL7-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSISKFLLLGLPIQPEHQGMFFVLFLVMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFLACIDNLLLAVMAYDRYVAICHPLHYAIIMREELCLCLLVLSWLLSCAYALTHTLLLAQLSFCADIIPHFFCDLDALLKLSCSDTSLSELVTFTAGAAVVIFPFIGILVSYGHIGLSILRVPSTKGICKALSTCGSHLSVVSLFYRTSMAVYLSSSGQFHDKDIIVSVMYTVVTPMLNPFIYSLRNRDMTLALGILFRNINIFSK", "length": 311 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SMZ6-1", "protein_name": "10 kDa heat shock protein, mitochondrial", "gene_name": "HSPE1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 102 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SRB7-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVVQKSGEKKRGRSAINEVVTREHTTSIHKRIHGVGSKKRAPRALKEIRKFAMTEMGTPDVRNDTRLNKAVWAKGIRNVPRRICAPLSRKRNEDEDSPNKLYPLVTCVPVTTFKNLQTVNEDEN", "length": 125 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SUB9-1", "protein_name": "Multifunctional fusion protein", "gene_name": "IL1B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATVPEPAKEVMANNGDNNNDLLFEADGPKEMKCRTQNLDLSPLGDGSIQLQISHQLCNESSRPMVSVIVAKEKPMNPSSQVVCDDDPKSIFSSVFEEEPIVLEKHANGFLCDATPVQSVDCKLQDKDEKALVLAGPHELKALHLLTGDLKREVVFCMSFVQGDDSDDKIPVTLGIKGKNLYLSCVMKDDTPTLQLEDVDPKSYPKRDMEKRFVFYKTEIKNRVEFESALYPNWYISTSQAEQKPVFLGNSKGRQDITDFTMEVLSP", "length": 267 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F2Z5L2-1", "protein_name": "Histone H2A", "gene_name": "H2AC18", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4IWB9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 28", "gene_name": "CYP705A28", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIMGRSCSEKNGEAERVRGLVIESLALSPKIFLGMIFHKPLKKLGISLFQKDIKSVSPKFDELLEKFLVEHEEKMEEDHYKANDMMDLLLEAMEMRMQNVNLCIKRVSNTKARKPPILFRYGKYSNNSLLLQELLVAGTDTSALATQWTMAELINNPTILERLREEIESVVGNTRLIQETDLSNLPYLQSVVKEGLRLHPPASISVRMSQERCELGGFYIPEKTLLVVNTYAIMRDPNFWEDPEEFKPERFITSSRSEQEDEMREEVLKYIPFSAGRRGCPGSNLAYVSLGIAIGVMVQCFDWRIKGEKVNMSETAGTIMLAMAQPLKCTPVPRTLNLLPSSLHIPSS", "length": 348 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J311-1", "protein_name": "Zinc finger (C2H2 type) family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLDGVELLLDLREMVSQSGFEKSTTCSGVIALRSNLQSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDSLKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISCSKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERIWGLKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASISNLPLGDGFMDLELKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHRWKLVPKPEYIEDDSSLLDSSEAKKIVSKPSSFEHAQEEKILQCVEPKLEFHEQLAHSGFDKFDTCSKIRFSALPSPPEAKKIVSQPPSFEVSVDEKILYRAEPKLNFSEPLAHSCFDNSSSYRSIICGKSFVCSQALGGHQTLHRSIKGQLAGTEDGNSLSVTDSEASKIVAQPSSYKSQGI", "length": 650 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLV4-1", "protein_name": "Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein", "gene_name": "DHYPRP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASTTIILFLSFSIIPLLTIVRADNHSVYCPPPPPCICICNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIIRNVSDLDAVTCFCKSVGAPRFSLSPNFGIFFKVCGRRIPQGFSCPGPSPTISPPPLPPQTLKPPPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIVRNVSDLDAVTCFCKSVGARRFSLSPNFGIFFKVCGRRIPQGFSCP", "length": 375 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K5R6-1", "protein_name": "Cell division cycle 20.6, cofactor of APC complex", "gene_name": "CDC20-6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMKSIALALCLTHHSPMVLSIVDYGDSQEKTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSSYVETEKVEEEDRDDFLKQVWFLTDNLVFFFVDIEEYIVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPFAHVNHIR", "length": 428 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F5H284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4D", "gene_name": "PPIAL4D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F6R3J9-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1G", "gene_name": "Speer1g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNKKNKEVEIDWALIEKYLVDLNLNGQTGADQQP", "length": 157 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6X687-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1A", "gene_name": "Speer1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKQSSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMPVTQNQKNKEVEIDWALIEKYLVDLNLNGRTGADQQP", "length": 157 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6YNI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRCRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILVGLQDYQDNKADVILKYNLDEARSLKAYGELQEHAKINETDTFGPGDDDEIVFDDTGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7AMQ8-1", "protein_name": "Exocrine gland secreted peptide 8", "gene_name": "Esp8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKVSAMTSFPVMLFLIILLLPSICSEERTQADPTISADNKKNFKTVVDLTDCQCERNFIESLESTLPASNQDQTLFENMTNQHKLNLSKMLSVLSKCCTQKQQVDTVHFRRMPHRIQSTKQNNYKKQVLYPMQEFMNLTRDVLVSRYV", "length": 149 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7C9P2-1", "protein_name": "F-box and WD-40 domain protein 25", "gene_name": "Fbxw25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSLPMLKILSYLDAYNLLQAAQVNKNWNALASSDVLWRKLCQRRWHYCDMVTLQLQGKETWKQFFIYRIWQEHAKTRAKPEDFTYKEIPVECGFYGYACYISGHGLTRNGQGKSVICMVSSKNTISTWDIHKSVITWVSPVQPASINLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLVGDTLGNLYIFRIPDLHLISTVNVFPYGFDEIDCSPQKKWVLLSKNYPHILPKVFYMSSLLRTSEFSAPVSTILEFSLCQGAFWTPRREDRITLMSRSGFPQITKFETFDMKLEGIGNKVAVQGKLIASFFLPYYEESPNWIGVSDKDVIVCSTHFFLLLFTINGLHLQTFQYCPETIVRLCVDPVHVIVTCNNGSLDVYAWEERSLLLRKCYRLQNKRPLPLYGFINNLLCDDVSIVQLMRDGHGPYSLIAYALNICS", "length": 466 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7ELE5-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "gene_name": "Ndufs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RRTVVYTARARSQEKSGSEPLSLWFRFPLVSIWALDQNRNSLEDGPQRLSEGRGQDGGAGGSWLALCTDPGSAHRHSGSAAQSPPECGSHWEPEQSAVSKAGAGAVVPKPSHLPRSRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR", "length": 271 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7F947-1", "protein_name": "Beta-defensin-like domain-containing protein", "gene_name": "Spag11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLSQRPPNVFRHVVDFLKKNQTHITQACSGNSGGRKASSSDLCGCALCLEAPSPHSQLSYKRACSSCPPTRGSSVPAVPSTAMKQRLLPSFVNLLLAALLLPGKAETWLRSWTQALSAVVTLGSSSASSINHLVTEPPSSPQDEFPAQGGNGSGLLHHRVKRFPPRTPPYHEPGPNYQIVNCKKNEGFCQKYCNFMETQVGYCSKKKEACCLHPF", "length": 216 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7FNC4-1", "protein_name": "Interleukin 36, gamma", "gene_name": "Il36g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSKYPHSPCTASGKETPDLGQVSDVDQQVWIFRDQALVTVPRSHTVTPVTVTVLPCKYPESLEQGKGTPIYLGIQNPDKCLFCKEVNGHPTLLLKEEKILNLYHHPEPMKPFLFYHTLTGATSTFESVVFPGSFIASSKIGKPIFLTSKKGEHYNIHFSLDII", "length": 164 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VPX6-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A1", "gene_name": "Speer4a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVNGRETREGRKDANLPPESNEGRRRWTWRMWMAHRQTTSSVPVTSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHNLEMENMEARENKQEFKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQERLVELNLSCKDEQEKTSNLETQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHTQNPPSSSDESSSDESSYSTCPAWE", "length": 267 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F8VQM2-1", "protein_name": "C-C motif chemokine ligand 26", "gene_name": "Ccl26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFFDLGLLVLLAIFLSVQLGVATCGSSIAMSCCPNFSYYVIPWSWVYSYKFTDKSCTSDGVIFFTKTGKQFCVQPGAKWVQRFISLVNTRNHL", "length": 93 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3GSG1-1", "protein_name": "Ferritin", "gene_name": "LOC100767129", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGFLRKSHRRQRHRCPLRVSRATVAYPLVFMTPPIISPPSQVRQNYHFDCKTAVNNHVQLQLHNSSVYLAMAFYFDSEDVAQKNLASFFLNKSHECTAQAEMFLELQNQRGGRISLGSIREADRNNWLGGLQAMECALQLELSTNQSLVALHQLASSKSDAHLCSFLKNHFLTKQVEVLKEISGYVTKLRQMGSPDDGIAEYLFGKLTLDDNKGK", "length": 215 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3GWA3-1", "protein_name": "60S ribosomal protein L18a", "gene_name": "LOC100764432", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKASGTLREYKVVGRCLLTPKCHTPPLYLMRIFALNHVVAKSRFWSQLKKMKSSGEIVHCGEVRPEVPLQVKNFAIWLHYDSRNGTYNMCREYWDLTVTQCYRDMGAQHCARTHCIHIMKVEEIASGKCQRPAVKQFHDSKIKFLLPHRVLRCQHKPHFTTKRLNTFF", "length": 168 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H156-1", "protein_name": "Prefoldin subunit 4", "gene_name": "LOC100773780", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVATMKKAAAEDVNVTFEDQQKINKFARDTSRITEQKEIEVKKNHLQNLEDTFNDIMLADGDCFMTQYLIRDVLISHSQEEAQEMLEEAKKTLQEEIDALESRVGAIQWVLANLKVQLYTKFGSNINLGVDES", "length": 133 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H2T6-1", "protein_name": "Histone H4", "gene_name": "LOC100757199", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H8X2-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase gamma", "gene_name": "Agpat3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGLLAYLKTQFVVHLLIGFVFVVSGLVINFTQLCTLALWPISKQLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDIVKEGLQCLSDYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLPRTKGFTTTVQCLRGTVAAIYDVTLNFRGSKNPSLLGILYGKKYEADMCVRRFPLEDIPADENDAAQWLHKLYQEKDALQEMYKQKGVFPGEPIKPARRPWTLLNFLCWATILLSPLISFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE", "length": 376 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HAB3-1", "protein_name": "40S ribosomal protein S15", "gene_name": "LOC100759804", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVEQKKKRTFRKFTYCGVDLDQLLDMSCEQLMQLCSTRQRLLLNCSLWRKQHSLLKSLRKAKKKVPPMEKPEVGKTHLRDMIILPEMAGSMVDVYNGKTFNQVEIKPKMIGHYLGEFSITYKPVKHGGPGVGATHSSRFIPLK", "length": 145 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDI6-1", "protein_name": "Lipid transferase CIDEB", "gene_name": "Cideb", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEYLSALNPNGLLRSVSTMGSELGRRVWNSGPPPQRPFRVCDHKRTVRKGLTAATRQELLDKVLETLLLSGVLTLVLEEDGTAVESEDFFQMLEDDTCLMALERGQSWSPRSGMLSYGLGREKPKHSQDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGVGPKKVLRELLRWTSSLLQGLGHMLLGISSTLRHVVEGAERWQWHKQNHLRS", "length": 219 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDS5-1", "protein_name": "Histone H3", "gene_name": "LOC100773314", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HGI3-1", "protein_name": "PHD finger protein 6", "gene_name": "Phf6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSSIEQKKGSTRQRKCGFCKSNRDKECGQLLVSENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEETFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDSRSTSSHGTDEMESSSYRDRSPHRSSPNDTRPKCGFCHVGEEETEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN", "length": 364 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HJW3-1", "protein_name": "Calcium homeostasis modulator protein 6-like", "gene_name": "LOC100774768", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKFKAVLDLQSKHRSALGYGLVTLLTAGGEKIFSEVVFQCPCSATWNLPYGLVFLLVPALALFLLGYALRTRTWRLLTGCCSWSASAQSSSGLQRVFVCAQISAAAALPPLTWVAVALLGGSFYQCAVSGSEAMARHLCKGRDPSCAAKLPQVPCKKQEAEMQDILSQLKAQSQVLGWILIAAIIILLLVVKSVTRCLSPVSYLQLKFWEIYLEKERQILQGEAMEHATQLAKENVRCFFDCTNPKDCSTPSSKAWQQISALYTFNPKNHFYSMLHKYVNRKDMSGSLRSVEGDAVVPVLGFVDASGMATTHGV", "length": 315 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQ40-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "LOC100767578", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLGSSSDSAPDCWDQVDMEVPGSAPSGDGFTSASTAAAEAAEAEAQRQHLSMAFSSQLNIHAKPFVPRVSAAEFVQSFLPGSAQPPAPTTSSSDETCTGAGDPQGKRLGWGAPVEPSKDGPLMSWEGSNSAVTMELSEPVVENGEVEMALEESWELKEVSEAKPGGSLGDSGPPEESGKEMMEEKEVIRKSKSMAIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD", "length": 631 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQN5-1", "protein_name": "Transcription factor 19 isoform X1", "gene_name": "Tcf19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPCFQLLRIGGGRGGDLYTFHPPSRSGCTYRLGCRADLCDVALRPQQEPGLISGVHALLHAELQGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGQAGTSSSEFYFMFQQVRVKPQDFAAITVPRSRGEAGTGFQPMVPSQGAPQRPLSTLSSAPKATLILNSIGSLSKLQPQPLTFSRGGGRPQSLAVPTQPGEVGASPPAPPTRNRRKSVHRVLAELDDENETSLSPLSVLMEPRKKLRLEKAALVSSGRD", "length": 266 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HWQ5-1", "protein_name": "Zinc finger protein 219", "gene_name": "Znf219", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGSRPRILVGHLEPSPPAFDGELDLQHYSNGPGVSTGSPGMGAVGWSETRAGERRFPCPVCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLLLELEERALLREAQLGRARSSGGMQATPATEGLARPQVPSSSAFPCPFCKGKFRTSAERERHLHILHRPWKCSLCSFGSSQEEELLHHSLTAHGASERPLAATSTPEPQPPPQPEPRSALEPEPEPEPRPEPEHEANPAPTPAPPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHTSKLGPLRAPGPGSTPARAPQPPDMSLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSVRAGEVRPNGEGADPGAGRSYGGGFRPLPSALPNRARRHRTEEPEEEEEVVEAEEESWARGRSLGTLTSLHPHPGEGSGQSAPAVGAQARPTGTQEENGLLVGGARSEAGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSSAGPGPPPEPPPPSPRGAASLQPQSGAKPTQASATWVEGTASTRPSSSGTGAGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGSGGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRQPRADTSPPYVRAPSGETPPSPPLEEEGSPGLSRSGEAGLGGQER", "length": 725 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I071-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "LOC100753244", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKIKARDLRGKKEELLKQLDDLKVELSQLRVAKVTGSAASKLSKIRVVQKSIVRVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMHRQLTKHEEKLKTKKQQRKERLYPLRKYAFKA", "length": 122 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I1Z3-1", "protein_name": "DNA damage-inducible transcript 4 protein", "gene_name": "Ddit4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSLWDRFSSSSSSSSSSSSGTPATDRPPRSAWGSAAREEGLDRCASLESSDCESLDSSNSGFGPEEDSSYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVAQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLLSSANSSLVPGYSQSLTLSTGFRVIKKKLYSSEQLLIEEC", "length": 231 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IAH8-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "LOC100755128", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASNNTASIAQARKLVEQLKMEANIDRIKLSKAAADLMACCAAHAKEDPLLTPVPASENPFREKSFCTIL", "length": 70 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IG76-1", "protein_name": "Olfactory receptor 7E24 isoform X2", "gene_name": "LOC100765597", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYILALFGNLLIILTVSSDSHLHTPMYFFLSNLSMIDIGYISTTVPRVIVDIQTHCPVISYVGCLTQMSLIIIFACMDDMLLSVMAYDRFVAICHPLYYQVIMNPSSCGVLLLGSFLLSLVNLLLHYVAVLSFSNCEDIFEISNFFCGPSELFKLACFDTFTTNIVRYCAGALFGLLPISGIIFSYFKIVSSIMRSSSSSNGKWKTFSTCGSHLSIVCLFYGTALGMYFSSSLSLSPKTNAVASVMYTVVTPMLNPFIYSLRNKDIKTALRKILSRTF", "length": 278 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IGD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100770882", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGANSSSLTPEFFVLNGIPGLEDAHVWISLPFCFMYMIAVVGNCGLMYLIGHEEALHRPMYYFLTLLSFTDITLCTTTVPNTLCIFWFNLKKIGFKACLAQMFFVHTFTATESGMLMLMALDRYVAICYPLRYGTILTNPVIAKASLATFLRSVAFILPFTFLTKRLPYCRGNTIPHAYCDHMSVAKISCGNVKVNAIYGLLVALVVCAFDIFCITVSYTMILRAVMNLSSADARHKAFSTCTSHICAIVITYVPAFFNFFTHRFGGHTIPHHIHIIVANLYLLLPATMNPIVYGVKTKQIRESVIKFFSGDKSGITEIKGLQNK", "length": 326 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3INQ1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100763177", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFCNTSTPGHSTFLLTGFPGLEASHHWVSIPINLICVVSILGNSIILFLIRTDPALHEPMYIFLSMLAASDLGLCASTFPTMVRLFWLGIRELPFDLCAAQMFFIHAFTYVESGVLLAMAFDRFIAIRDPLHYATILPHSAVAKVGAAVLIRAILLNLPGPILLRRLLFPQVSVLSHCYCLHCDLVGLACSDTRINSLVGLVSILLSLGLDSSLIMLSYVLILRTVLSIASPGERLKALNTCVSHLCIVLIFYLPKLGLSVLHRVEKHSYPALAVLMANLHFLVPPFMNPVVYCIKSKQIRQGFLKRFQQKRVDVS", "length": 316 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MYE2-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFVKVVKNKAYFKRYQVKFRRRQEGKTDYYARKRLVIQDKNKYNTPKYRMIICVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAVAYCTGLLLACRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGALTCYLDAGLARTTTGNKFFGALKGAVDGGLSIPHSTKQFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLTEDEDAYKKQFSQYIKNNVTPDMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLGQENDRVAQKKASFLRAQERAAES", "length": 295 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3MZM9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC107131211", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELRRRLLIIVIGTLITGYMVTCTCLLHYRCDSKEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3UW31-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r176", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVTLQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQFVTLAPGTWGRVMLPGRAPNFLRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDSNSKSKWVCSTSGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFVDSRVWLRRVKEILSVSFPTFSPLLLIFRDPKDPCSLLFGC", "length": 304 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3UY92-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r158", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQLLLLCQFGVGTVAKVFLFVRNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVARSTNLCSTCVLSFHQFVTLVPLNRGKGKLVLRASVTNMASYSSYSCWFFSVLSNIHIPIKVSGPQIKDNNTDSNRKLFCSTSGFSVGTVLLQFAYDATFMSIMVWASVSMVLLLHRHRQRMQHILTPNQDARGQAESRATRTILMLVVTFVSFYLLNFICIMLHALFMHSHFFVRLVSEILTAVFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3V9M0-1", "protein_name": "Cystatin S like 1", "gene_name": "Cyssl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACLLYTQLFLLNTFILFLNLSLNPVLGQILAGIEKSIIEEEGALEALNFAVSEYNENNSDLYLSRVVEVKTVKTVQQQIEAGKTLLFDVILGKTACLKTQDDLSDCPLNEPTDLQEREFCSFEVHLPDWANAINLLSSICNRI", "length": 144 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X693-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "RVFLPLLLLGVILPGGDNEDGPTSFHLIQISTFVNNTWAQNQGSGWLDDLQIHGWESDSGTAIFLKPWSKGNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGCELHSGEAIESSLRGALGGLDFVSIQNHSCVPAPDGSSRGQKFCALTTQYQGISDIIERLLSETCPRYLLGVLDAGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDLMPIGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSLILLICLAFGVLRFMGSHRIGHD", "length": 317 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9Q9-1", "protein_name": "Predicted gene 6526", "gene_name": "Gm6526", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGDQGETRPRQKESAIPSCKKRRMKSFWGRHMSAGKKSSQNCNITNHMKNMNKLEDMKFYIRKINAKRLELFPILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKMTQSISDTIETYKEFIEDKDSYSFTHSYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEEKRFCDESSKNIHPKC", "length": 198 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G5E8X8-1", "protein_name": "Oocyte maturation, alpha", "gene_name": "Omt2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTLVFTKVHLESWVYKGLRGQHDSILELLKENLHHYLCIEFDEGLNDTVVYIIGFKFFAMFAMFVIVSLACNLRTKRNRARAWARGLQSPVWWNRRYFI", "length": 100 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ46-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLSFMSSLLENILYFQAGLGVLANIFLLVFYIFIILGHRPKPMDLISCQLTFVHIMMFLAGENFWLANIFESLNVENDFKCKATFYTKRVMRGLSICITCLLSVFQAVMISHRNSLLAKFKHKLKIYMINALFYIWTFNLSLSSNLIFYVGGFTNMSQTKQLKVTKSCSLIPMNYIIRGLILTVISSRDMFLVGVMLTTSTYMVIILCRHQRQCKHLHSTSHLRASPEKRATQTILLLVVFFVIMYWVDFIISSTSILLWMYDPVIMIVQKFVVNAYPAITPFVQISSDTRVIRVVKNWHS", "length": 303 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ88-1", "protein_name": "Vomeronasal 2, receptor 3", "gene_name": "Vmn2r3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMAIRKKCLILELTVFLCVELYAQYEDQNMTCRLMRKFNLTGYVEAENHHFVIGGQFPVHYRTIPTSDSDEEPESPMCEGFNFRGFRWMKTMIHTIKEINERKDILPEHTLGYQIFDNCFSTTKAMESSMVFLTGQDEYKPKWRNSTGKYLIGIIGAGGSTMSLAGARILLLNDVVQVGYASSSSILTEYLNVYRTIPSDKFQTEAIVNLIRHFGWVWIGAIASDDDYGKHGVKSFRKILETNNLCIAFSETIPKVYSNEKMQIAIDAVKSSTAKVIVLYATDFDLSPFVLEVIHHNIAHRTWIATEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDHLCTGKEKLKDLKNTYLDTSQLRITNNVRQAVYLMAYGLDRLIRVLIKEYREYLLHPKILAFMSYKLFEYIRKVKFTTHDGRKIELNVHGDIENGYYDILNWQMDNTGDIAIVKVGEYKFTRSKYELVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGFITGQPVCCFDCIPCEDGYVSEKPGQRLCNPCSEDDWSNAEKNKCVPKHVEFLAYEEALGFTLVILSIFGALVVLAVTVVYVIHRHTPLVKANDRELSFLIQISLVITVLSTMLFIGKPCNWSCMARQVTLALGFCLCLSSILGKTISLFFAYRISISKTQLISMHPSFRKLIVLLCVFGEIGVCASYLVLKPPSMFKNIERQNVKIIFECNEGSVEFLCSIFGFDVLLALLCFVTTFMARQLPDNYYEGKCITFGMLFFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGCLFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTMVSTVLDE", "length": 909 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BKT1-1", "protein_name": "piRNA-mediated silencing protein C19orf84 homolog", "gene_name": "Gm52993", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPTHLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRPPRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPSTPPVTPPSQDGQKEAGGLSEDWEADY", "length": 185 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BLP0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLTNILYFQAGLGILANTFLLCFYTFTILCHRSKPMDLTSCQLTLAHILFLLAGGDNWLAVILESLNIENDFKCKAIFYTNRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLKTYIIYAVFYIWFYNFLVCSHLLVYVGGFNNVSETNQMRVTESCSLFLMNYIISGLIFTVTTFRDVFLVGVMLITNAYIVIILFRHQRHCKHLHSIRHLRVSPEKRATQTILLLMVFFVVMYWVEIIISSTSLLLWMYDPGFLTVQKLIVTVYPTITPLVQISSDKRVINVLKNLQSKCQQIF", "length": 302 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "I3ITL1-1", "protein_name": "Gap junction protein", "gene_name": "gjc4a.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSWDFLTHLLDEISNHSTFVGKIWLTLLIVFRIVLTVVGGETIYDDEQSEFVCNTLQPGCKNVCYDAFAPLSHVRFWVFQIIMISTPSVMYLGFAMHKIARMADNEYQPRKHKMLSTVHQRMNRDYDMVDEMTEEVPMIPEEIEPSEKDNKSAASTKTTAASDAAVKHDGRRRIKRDGLMKVYVLQLISRVAFEIAFLFGQCILYGFEVSPSYICTRSPCPHTVDCFVSRPTEKTIFLLIMYVVSVLCLALTVLEILHLGIGGLRDSFRSRANRRLPVHRPSTSTICHRLSSAPPGYQAVQKKYSSGKLKAEFLSDSGRESLADDNTTRDLDRLRRHLKIAQQHLDQAYHTEEVGASHNSGPDSKSIAAEQNRLNQAQGGFGSTEEKVFKEAHA", "length": 394 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3L8A5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "FPSRQERTMRRENQSSISEFLLLGLPIPPEQQGVFFALFLGMYLTTMLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFSSVTVPKMLMNMQTQDQSIPYAGCVTQMYFFMFFACLDNFLLTSMAYDRYVAICHPLRYTSIMRGGLCTLLVTVSWILSCANALCHTLLLAQLSICAENTIPNFFCDLGALLKLSCSDTSFNDLAIFIAGVATIMLPLLCILVSYGHIGATILKIPSTKGICKALSTCGSHLSVVFLYYGTIIGLYLVPSSSTSSHKDIVASVMYTVVTPLLNPFIYTLRNRDMKGALEKLFHKAPVLS", "length": 320 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3L8Z8-1", "protein_name": "LRRC37A/B like protein 1 C-terminal domain-containing protein", "gene_name": "LOC100514982", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNVAEADIPPGHLKTHTGNPPVNPESGTSGYTNKLRQLRFLENLLDAEIQEKIDEVMKKEKTAMLIYSNILSPKLRRQILRKKLETARTQAESLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVYSRRRTLREGKVGRRRGFFGFLLRKRRSGESESEGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGAGEVSEAPADVILTIESDVEDLGEETDTAPEGPPE", "length": 799 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LBH4-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPPKFNPNEIKAMYLRCTSGEISAKSALAPKIGPLGLSPKEVGDDIAKAAGDWKGLRITVKPTIQNRQAQMEVVPSASALIIKAPKELPRDRKKQKNIKHSGNITFDEIVNIARQMRRCSLARELSGTIKEILGTAQSVGCNVNGRRPHDIIDDISSGAVECQAS", "length": 165 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LC12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFGANLTIFHPTVFILLGMPGLEIYHTWLSIPFCLMSIVAVLGIGALILVVLSESTLHEPMHVFLSMLAGTDNLLSTTTVPKALAIFWFHAGEIAFDACITQMFFIHVAFVAELGILLAMAFDRYVAICALLRYTAVLTPSTIVKLTLAIWGWGIGTIFPIIFLLKRLPYCRTNIIPHSYCEHIGVARLACADITVNIWYGFSVPMASVLVDVAFIAVSYTLILQAVFRLPSQDAQHKALNTCGSHIGVILLFFIPSFFTFLTHRFGKNIPHHIHILLANLYVLIPPMLNPIIYGAKTKQIRDSLAHMLSRVGMS", "length": 315 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LEQ2-1", "protein_name": "All-trans retinoic acid induced differentiation factor", "gene_name": "ATRAID", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARPGFRSPSSLVPRAAALLLVLSVPRALALPEICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQRTFATALGTQKRVLRMDLVLLMVLVSCSVFVLMASMATSVCARAHSHCSCSSVFWDPQHYPFPSCFGGLNAEKPRLHEPQRSSY", "length": 236 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "J3QM75-1", "protein_name": "Secretoglobin, family 2B, member 19", "gene_name": "Scgb2b19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLITGELSFQTTEACVPFFEGYASVVSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMG8-1", "protein_name": "T cell receptor alpha variable 13N-3", "gene_name": "Trav13n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRLLCSLLGLLCTQVCWVKGQQVQQSPPASLVLQEGENAELQCTYSTTLNSMQWFYQRPGGRLVSLLYSPSWAEQRGGRLTSSAASNESRSSLHISSSQITDSGTYLCAME", "length": 112 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QML3-1", "protein_name": "BTB domain containing 35, family member 29", "gene_name": "Btbd35f29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHQGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKKVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDALTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMQ9-1", "protein_name": "Predicted gene, 20873", "gene_name": "Gm20873", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRESSSNTLRNIVGRRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPGLYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANLSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMS5-1", "protein_name": "BTB domain containing 35, family member 2", "gene_name": "Btbd35f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEDIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKKVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW5-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADIILKYSPDEARSLKAYGELPEHAKINEMDTFGAGDDDEIMFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW9-1", "protein_name": "BTB domain containing 35, family member 6", "gene_name": "Btbd35f6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLQTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QN64-1", "protein_name": "BTB domain containing 35, family member 22", "gene_name": "Btbd35f22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QNQ5-1", "protein_name": "BTB domain containing 35, family member 24", "gene_name": "Btbd35f24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKDTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIYDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP08-1", "protein_name": "Histone H2A", "gene_name": "H2al1k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTRSQRGELPLSLVDRFLREEFHSSRLSSSALSFLTSVLEYLTSNILELAGEVAHTTGRKRIAPEDVRLVVQNNEQLRQLFKPGGTSVNEDDN", "length": 105 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP87-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCNIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINETDTFGAGDDDEIVFDDIGDEDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP96-1", "protein_name": "PRAME like 3C", "gene_name": "Pramel3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLRILDLRQDAGCKTVCPDISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKELSLSSFCLTDHLETVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD", "length": 463 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QPI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLTKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGAGDDDQIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QQ02-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLESMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7GP63-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL", "length": 51 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "K7N5V5-1", "protein_name": "Predicted gene 5862", "gene_name": "Gm5862", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N660-1", "protein_name": "Predicted gene 10220", "gene_name": "Gm10220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARKLGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPSWE", "length": 267 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r168", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNGAMKTTEEVALQIVLLCQFGIGTMANILLFVHNFSPLLTGCQLRPKEVICANMAVSSILILFMTVFPNNVFVAQRNLLNDLQCKLEYFVYMVARSTNLCSTCVLSTYQFVTLVPGNFSELMVRGRSPKVISYSCCSCWLFGILYNVYIPMKVSGPQNRHNKTSTKSKWVCFTSGFSVGIVFLSFAHDAIFISIMVWASVSMVRLLYRHYQRLQYIFPPHQGNRGYAEIRAAHSIVLLVVTFVSFYLLHCICFILHIVFVDSNLWLRHIGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYKKPVI", "length": 309 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Gm10670", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANDFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSMHQFVTLVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATNTILMLVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNLKHRRQLH", "length": 321 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6G6-1", "protein_name": "Predicted gene 16440", "gene_name": "Gm16440", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLCQKENGDEGEIRTTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKITKQRSKINELEELKLDMRKISNDMEEMGGILELYIYEDLNYRMNTEFNIIKSQHEKTMLDMNEMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLSEKVRILLNENRKLLVEQAGTQLSHEEEKRFCEEASKNICASSAKEQQCVNSSRNRNMAQTTT", "length": 218 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6J5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r127", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLTAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6P1-1", "protein_name": "Reproductive homeobox 2H", "gene_name": "Rhox2h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKRSINYLLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGPAAPVAGLMDNSNQEDLSATGCAQEKETQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPKFRHLWRHNFNVLQLQELESIFQCNHYISTTEENRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6T9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r175", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGFGTAVNIFLIVHNLSPILNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCFLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVNGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFLDSRVWLRRVKQILDVSFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6U2-1", "protein_name": "Predicted gene 3542", "gene_name": "Gm3542", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSNITNQISNINKVEELKLHIRKTSNERKEMCGILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRKLLVEQAGTQVSCEEERGSLRRPARTSVPQVQRNSSFPKCETVQQKLEHGTDHDMISLKEKCWWKRTGCAQEIHHCCLSSLITMAVMGCMLLLYFGFLGMNRP", "length": 270 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W5-1", "protein_name": "Predicted gene 17019", "gene_name": "Gm17019", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRDTREGRKDADLPSERNEGRRRWTWRMWMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTTEETNELRDRLIYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQELKKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSVKDEQENSNLETPEYQVSEAARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI", "length": 255 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r170", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGVGTAVNIFLIVHNLSPNLNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHHRLQHIQSTNQKLRVHAESRASHTILMLVVTFVTCYHLDCICTFCNISFLDSQLWLRRVKQILDASFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r94", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVIFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r103", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Y3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSIILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFYIHSRLFIRLVSEVLAAVFPSICLHNGVLLSY", "length": 295 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Z0-1", "protein_name": "Predicted gene 17026", "gene_name": "Gm17026", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "XRSSWVPKQACCPCSSGYFRERIEYTQTPDQGRRRPAAHHGGKGQETTGHGEGSAGAASPQAPTINDQEKRHERLEKLKRELQNIKNARDELQGILANYTNKDLNDRINFETFMLQMQHDQVMTDLKRMPQDISEALYKCKQLTKENQFYCFRNCHLLIESNLIQHKVRMLRKENRQLLREQIALEECNIETKILCKEGSQKIKDHYTKQQQI", "length": 213 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N701-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r159", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMSVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNTRGQAESKATRTILMLVFTFVSFYLLNFICIIFHTLLMHSHFFIRLVSEVLAAVFPSISPFLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N708-1", "protein_name": "Predicted gene 10128", "gene_name": "Gm10340", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSVI", "length": 205 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N731-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r57", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALNILLLCHVVVGTVGNILLFVHNFSPNLTDSRLRPIQVILINLAVANAFMLLFSTYSYDLIDFVPRKPPTDLKCKLAYFFHMVARGTIMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVSYSCFSCWLFSVLNNAYIPMNVSGPQKSHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFLGIMAWTSVSMVIHLNRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCIIILFHITFVESRLSLRHVTKLLSLSFPTISPLLLIFREPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N744-1", "protein_name": "Predicted gene 8104", "gene_name": "Gm8104", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNMNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIDFTIIKSQHEKTMLDMEKMTQSISDTIEKYKEFIEDKDSYSFTHTYLLKECNQLKEKVRMLLNENRKLLVEQADQETSYGEEKRFCDETSKNIHPKC", "length": 198 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N751-1", "protein_name": "Predicted gene 3696", "gene_name": "Gm3696", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPQEHLCPKCQGTAV", "length": 203 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N757-1", "protein_name": "Predicted gene 3667", "gene_name": "Gm3667", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRRLLVEQAGHKCPVGKKRGSLRKPARTSVSQVPRNSSVK", "length": 205 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7F4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r260", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGNSLKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVVRSTNLCSTCVLSVHQFVTLVPLNRGKGKLVLRASVTNMASYSSCSCWFFSVLSNIHIPIKFSGPQITDNNTDSKRKLFCSTSGFSVGIVFLQFAYDATFMSIMVWTSVSMVLLLRRHRQRMQHILTPNQNPRGQAESKATHTILMLVFTFVSFYLLNCICIIVHALFMHSHFFVRLVSEILTAIFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r163", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVMTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLKFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPNICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r242", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7H2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r256", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILGHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSLLVARSTNLCSTCVLSIHQFFTLFPVSRGKGKLILRASVQNLASYSFYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDDTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATHTILMLVFTFVSFYLLNCICIIFHAFSIHSCLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9JA28-1", "protein_name": "Interferon lambda receptor 1", "gene_name": "IFNLR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWRIRVLATLCFLWQPRVHGQLPPPQNVTLLSKDFDMILTWTPGEGSPPDVLYTVRYESKTRMDKWIKVPHCRNIHSVSCNLTCVIPNFFIKFRAQVKATSGRFHSPWVKSQFKEYHLDVELAPPLLNVNVKENVIHVNATFPMAICVESLPWMYDFNLWEAGSEDKKQYKSIFRKKAVTIDTTALRGNYCFNARSSIQSIDFKHSKFSQPVCMQLNYEGEWKFPFSATIPVFVLLILLTSASIIWLLKQDAKHKKMPQTLDLSNCKIAGPTFCCELRENEFLTDCLICTDKPMSQGKKNKTLAQNNQMWMASFLPSSSSEEEEEEEEEDSSSFIPYTEMLQFPRKHFNFQTPRTADAETILDSTSGVLSVVGGSTLDLSALGFSFFPIRKNEMDTSGSQGNEKASHSHSSSLGRISLTDVRFPGPREHGQHGTDSNDCLEVSLLHTLMNSSCTRLPADEHCLYKKDHDFTICYQKPTLDQPVQVSENPLLNEDPSMEKFIYLQTLQVAEDEGFASDCDSGNFTEGTPPASTVLSDELRISDMEKRYDKKFKFKGYQHSHYMRRS", "length": 567 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "L7MU37-1", "protein_name": "Reproductive homeobox 3H", "gene_name": "Rhox3h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEESRNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU51-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a76", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQSNNVTEFVLLGFTQDPAGQKALSVMFSLIYIVTMVGNLLIVGTVIASPSLGSPMYFFLASLSLMDAIYSTAITPKLIVDLLCEKKTISFRACISQLFIDHLFGGVDIVILLAMAYDRYVAICKPLHYLIIMNRRVCILFLVMAWAGGLAHALFQVLAVYNFPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLSIIGNNGAMCIVIFTLLLLSYGIILRFLKNHSQEGRRKALSTCGSHITVVFLFFVPCIFMYVRPVSSFPIDKFITVIYTIVTPMLNPLIYTLRNSEMKNSMEKLLQKTLSPSRIRLSSCCLCY", "length": 318 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU81-1", "protein_name": "BTB domain containing 35, family member 17", "gene_name": "Btbd35f17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANTWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU83-1", "protein_name": "BTB domain containing 35, family member 18", "gene_name": "Btbd35f18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDQVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MUB9-1", "protein_name": "Reproductive homeobox 2G", "gene_name": "Rhox2g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGLAAPVADLMDNNNQEDLGATGCAQEKEKQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPEFLHGWQQSFNVLQLQELESIFQCNHYISTTEAKCLARSMGVSKATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X6-1", "protein_name": "F-box/WD repeat-containing protein 15", "gene_name": "Fbxw15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFFIDRIWQERAKFRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVITWKSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLIGDTLGNIHIFRIPDLYLISTVNVLPYGFDGIYCSPQKKWVLLSKKHPHILPKVFYMSSFLRTSEFSAPVSTVLKLSLYERVFWTPRREDRITLMSRSGFPQVKMFETYDIKLEEFGNKRIVKGKLIASFELQCHKVNPQRFGVSDKNVIVCSTESSLLLFDINGLRLKTFQYCPEMIVKLSVDPLHVIVICNTGSMDVYAWEERSLLLRKCYRLHIERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS", "length": 466 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X9-1", "protein_name": "Demilune cell and parotid protein 1", "gene_name": "Dcpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSAPEGKNITSIRVFLKGRLIVGIQLNYDDNKDGQVYGSTAGKEMVARLSKEEHIIAAQGTYTPSALTQIIFTTNQPRQLMVGYYVGNSEYSSFPNDPSHVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 171 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y3-1", "protein_name": "PRAME like 51", "gene_name": "Pramel51", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIHSKERKYRLGLLEPGVTAFPCPNMVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSPGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFTLGDSEKLDEETIFSLISQLPTLHCLQKLYINDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPFCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELVSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVEL", "length": 520 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y5-1", "protein_name": "Olfactory receptor", "gene_name": "Or11g25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLSSPSNSSTITGFILLGFAYPREGQILLFVIFFIVYILILMGNASIICAVYCDQRLHTPMYLLLANFSFMEIGYVTSTVPNMLANFLSDTKVISFSGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYSSLMTGRLRNTLVTSCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRVPLIEVFWSIIMSMLLVIPFLFIMGTYILVLRAVFRLPSREGQKKAFSTCGSHLTVVSLFYCSVMIMYLSPTSEHEAGMQKLVTLFYSVGTPLLNPMIYSLRNKDMKNALQKILRT", "length": 311 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N227-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r125", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSMKTTEEVALQIILLCQFGIGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFARKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N255-1", "protein_name": "Predicted gene 3099", "gene_name": "Gm3099", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCLKGNGDEGETRPKKKEEGILSHEKGRRKLFWRRHRSARNTSTQNSNITNQISNINEVEELKLHIRKISNERKEMCEILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMTQFIIGSMQYSMELIEDNYSYSIKEDHLLRECTQLNKKVRILLNENRKLLVEQAGTQVSCGEEKRFCEEASKNICASSAKEQQLP", "length": 205 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N259-1", "protein_name": "Demilune cell and parotid protein 3", "gene_name": "Dcpp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSTPEEKNITSIRVFLQARSIVGIQFNYDDKDGQVYGSTAGKEMVARLSKEEHITGVEGSYSPSALTQIVFTTTQPRQLMVGYHVGIYQYSSYPDDPSFVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 170 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N270-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVIFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N273-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r118", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSVHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N275-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r169", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVALQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLHGRAPKFVRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKSKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSPNQKLRFHAETRAAHTILMLVVTFVTCYLLDCICTSLHISFVDSRVWLRRVKEILAVSFPTFSPLLLIFRDPKDPCSLPFSC", "length": 304 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N288-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r151", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQILLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2A6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r116", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVFLSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2B4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLGAVFPNICPLLLIFRDPKDPFSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2C2-1", "protein_name": "Predicted gene 2974", "gene_name": "Gm2974", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKERRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N474-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1E", "gene_name": "Speer1e", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "ARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNQKNKEVEIDWALIEKYLVDVNLNGRTGADQQP", "length": 154 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0QWR4-1", "protein_name": "Aly/REF export factor family member 14", "gene_name": "Alyreffm17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGMTRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQKQQQQLSAEELDAQLDAYQEMMDTS", "length": 261 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R3T3-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "ENSRNOG00000067174", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFLVLCLILSLGDYGAFPLIQSRIHRGCKGERHSQPWQVAMYHYDKAVGWGWHPSPTTMSTSPSHNKVRLGQHSLDADGDTGQDVPVRHSIPHPLYNRSLQMPTFLSPDADNSHNLMLRQLREPANTTEAVRVTEEPTEEAKLGSRCLASGWGSTRPDKCMPGMLQCVDLTLMSSDVCTYAYSQRVTESMLCAGHQEGSRDTCMGDSGTTLICDRMLQGITSWGGNPCA", "length": 230 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R777-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKSKEKTLGSHYKILSYLGQGSFGTVNLAWHLKTQALVAIKMLEISKETISSILSERAILETLHHPNIIRLFQVLITSSHVNFVLEYAPGGSLFELIKEGGPLQEEVAKKIFGQTVSAVKYCHNLDIVHRDIKPQNILTDAEGNGKLTDFGLATKFRPGTLLKELCGTKEFYAPELVLREPYNGKKTDVWSLGVLLYFISTGYCPFRGVTTKDMEKKIATGTYTIPTYFSGQLENLIHQILTVSPEMRPSIEDIEKHPWVRKCEVNIPTITCPDYKIVEMLCGMGYNANKILESLQKKKYDEPMAAYLILKDKVRQEIEHGTTTSDMPVDQGPLPPQSPAHHSVSGLPLKRRASEPNFGLLHIWPPGEQVARHNVARSVSMPPIALYGTKKQNSTSTSALHSRPVASPCVCNTILEIEIPLPTKQDFDMKTSSPPQRIGYFQRLCQRIRDCLSRLCCFLWAPKVHSPRKWLP", "length": 474 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9M1-1", "protein_name": "Olfactory receptor family 52 subfamily N member 1B", "gene_name": "Or52n1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLLNVSSLTPASLILNGIPGLEEVNLCIFFPLFTMYSIALTGNFGLIYLIYSEEVLHRPMYIFLALLSFTDVLMCTSTIPNTLFISWFNFKKIDFKACLAQMFFVHTFTGMESGVLVLMVLDLYIAMCYPLRYATILTNVVIAKAGMLTFLRGVALVIPFIFLTKRFPYCKGNVIPHTYCDHISVAKISCGNVQINAIYGLMVVLLIGDFDIPCITVSYTMILWAAVSLSSADARQKAFSTCTAHICAIVITYVPAFFTFFTHRFGWHTIPSHIHIIMANLYLLMPPTMNPIVYGVKTKQIQKRVIRFFFKGRENSSHKF", "length": 321 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9X6-1", "protein_name": "Paired immunoglobin-like type 2 receptor beta 1 like 2", "gene_name": "Pilrb2l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAWILLLLLLAACLHTGNSAGYQKTQDYGVNQPEQLTGIQGGSIEIPFSFYFPWELAKDPQMSIAWRWKVFFGEVIYNSTLLFLHEHFKGRLIMNWTQGQTSGVLRILNLKANDQSTYFSRIFLQATEGMKLWQSRAGTKLIIHALSTTMASPSIIPSAVPTAGLENTRGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWVIFLWWKQRLPTARISHQVSLHHTPCIPQSSMSSLWESELVAAGFSCESHSWITPTSAMGARIPSPWNQGPPVCLWA", "length": 289 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RAD6-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f19f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSTNQSSVSEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILVISTDSHLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILSSQAISFSGCLTQLYFLCVSVNMDNFLLAVMAYDRFVAICHPLYYTTKMTHQLCVLMVSGSWVTASLNALLHTLLMARLSFCGDNIIHHFFCDVTPLLKLSCTATNLNELMILTEGAVIMVTPFVCILISYIYITNAVLRVSSFRGGWKAFSTCGSHLAVVCLFYGTIIAVYFNPVSSHSSEKDTAATVLYTVVTPMLNPFIYSLRNNDLKGALRKVVHRKI", "length": 309 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RBH5-1", "protein_name": "Surfactant associated 2", "gene_name": "Sfta2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPSMCLFLLLTLLCSSLAGPTKVTLQVKLTEASQAKTSQDSGFLDMLQKICLLLHLSPGTNVTLHHKGPPHHLTCRA", "length": 78 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCJ6-1", "protein_name": "EF-hand domain-containing protein", "gene_name": "AABR07013776.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADQLTEEQIAEFKEAFPLFDRDGDQTVTTKELGMVMGSLGQNPTEAELQDMISEVDADGNGTINFPEFLTMMARKMKGTDVEEEIREAFRVFDKDGYTSAAEFRHVMTTLGEKLTDEEVDGMIREADMDGDGQVIYEEFVQMVTAK", "length": 147 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCP1-1", "protein_name": "Leukocyte immunoglobulin like receptor B3", "gene_name": "Lilrb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSTLTALAYLGLILGSENPVLSGAFTKPTIKMVPSNVVTTGKQVTIFCEGSSHAKEYRLHKEGSPDYLTPTTFLETENKAKFSISPIQWNNAGQYWCSYRSLTNKLRQSDIMELVVTGVILGEVTLSALPSYVVTSGRNVTLQCASQVVYDRFILMKEDEKFSTAMPSWKIYPVLWGAIFTLGPVTSNQRWRFTCYGYYLSSSLIWSKPSNHLELLVSGTLHKPILWAHPGSMVTSGSPVTIWCEGDQETQTYVLYRQGSLESWNRQTQKDYNNKAEFTIPSVTYLNAGHYFCYSYTSAGWSEHSDTLELVVTGVYKKPIFLALKNPIVNLGVTVTISCTSNQSFNCFLLMDDDQKIYRFFDLQYSYSGESLARFQVGPITSRQRWRFRCYGYYTDNPQVWSEASDPLDFLVSGNLQKPTLWAEPGSVIESGNSVTIWCEGTMETQIYFLYKEGSPSSWLRQTPKEPGNKAMFFIAFMEKHNAGQYRCYCYNFGGWSQHSDTLELVMTGVHHGKPTLSAFPSPMVTSGGNVTLYCASSTIYDWYIVTGQDLKFSRFQRAQFIPTEMSQALFSEISVASRKKGPFRCYGFNESTPHLWSEASNPLEIHVSGVSRKPSLLNQQGPVLAPGENLTLRCSSELSYDRFSLSKEGRSDLPQLSVSQSQTGEYYANFFLYSVDFSIAGQYRCYGASRFSSEWSAPSVPQDILVTGHPPITPSLSVNPGTIVSSGENVTLLCQSSIPMDTFFLFKKGDAYPYMHQRLKFQGPQCKAEFSLSAVTPNIGGIFTCFGSQSSSPYLLSHPSVPVEIKVSGLAKYQKSLIWVSVVFFLLFFVLTLFFFLRLWHQNKHRKGVQTKIDLQHPEGAVEPKSIVGHLQKSSRPAPAIQEEILCEKRWPGREITEVSASDATVKVTRSADNVELGILSQHQDDPSIHLYAQVKPARLRRAQTTSSSLFPKELQHSKHRQKNRDQVIDQQADTSQDSHAVIYAQLHIMTPRQGRQTSLFPGRIC", "length": 1008 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCQ2-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100361204", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQSSIP", "length": 328 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCW7-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb1l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAQLLLLLLSAACLHTGNSAGYPKKNVFSVDQPAVLSGVQGGSIEISFSFYFPWELAKVPQMSIAWRWKNYHGEYIYNSTQPFIHEHFKGRLIVNWSQGQTSGVLRILNLKENDKATYFSRVFLPTTEGMKSWQSVAGTQLIIIHAPSTTVVSPSIIPSVVPIAGLEDTRGKRTPSLLNLGAMVRMVVSKVVVIIALYGWVIFLWWKQRSAWSLLSFLTTWKSEEQMQMNTAPAPKEFK", "length": 252 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCY4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "AABR07000137.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSAPLGSLGRKSKNQSLGLDMLGTVLSTDSLSCTFTVKYRSSPGQCSVNGKPLLLFNDERQNSPVGKPEKKGNATKVCAELNQSLKDIFQKMMNLESWLFESKGNHTLQVTVQSQYNQGIFMDGCWVFTIDRQYPFYFYPKIMTWRESHPDASRTVSQWQNNRQVAQSLRTCSMGDFSQCLRKLLTDSREVPRSTITTLDPTQPSSAIQIPPTVDSASSVFTTWSQYIFVLILCLAILIINALIP", "length": 246 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RD07-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000064269", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRMMAMQMMTNSISDAMERYKELIQVNSSYNIRQSQLLREQAQLKNNIQILLNEKRELLVEETELPASSVEAKRLCEEAGMNICDPRAKQQQV", "length": 93 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RDP5-1", "protein_name": "Zinc finger protein 353", "gene_name": "Zfp353", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVAETPGASQTVPCNTQPSPVESSQLVSGQSSEMPTWKKTVMASACCNPQETACTQNSTAHPGKASDFYFGEPSETASFIQQVVSAEQKSSPAGSCLMNLSSTTKSCLSHPLKTEVLDTRKTLCNEGHWGRTLNSDKTLLIQITTMYESQWRTLGNHPVAPSGYHEGQAPNMDHLVDSVSNQTFIGDLEMEPSCNHVLYTDQFITSFSEQNPFGDQQRSPVADNRFYADQKILPNGYQTFYEPQMSTNYQITCVCGQNVCRCQEILLSGEHLLSEYQTSGYRYDQDLIVNLQVTSPIGGEPLHDSQIPNSNFDTTSCGTKRTTSSEEDNLAWHPETSLSSEETFLDQMRTSVDQNVYPSHNGTLKIEESLEPQVTSLSNQAPYVGESSDTSNSPLIQIQPQEISSASGLDQGQHPEIKLDLKTQSPVSLKNPHNSKRYCCTYQGCKKSYKKSQHLKDHMKKHTGVKPYMCNKPGCDWKFFRLVDLNRHKQKHSGERPYPCPMCNKNYSRFYYLKQHLRSHIQASPTTAT", "length": 530 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9MSI7-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG42818", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFIHQREQLPFKHNEQDPNYLAPVIQKRKPMDKDPRNPLKRLKFLQEFPTQSSKGDLDDLKYPTQLEGRHDSPKYDKTFHTEIHANNETDSQELENIILEKNLQDSKTEFQENRASQPKNMHSFQIPEAIESHFNNKELQNENDLHKGLKQQYRSGSEQDKSGPENVREIASKLILQWAENQRSLLDSFVKAITDVLKVHDSKLNMKINISPRDIMILKDMLKQLLESIMQLREGSTSTRARIVLNKWIETQKSLIDSFSQAIQNTNQNVDNIANVYEVMENLNKNLRELVILLSDKESFPTTESSSSQQTTSIYATTTFYLTSSTFGSTHPIVDENINRVNIMGNLIKGLRNIMVQMDETNKTSSSTSYTTTESTYIQPSTSTYLNAEVTTSHPTTSTYEVTNIITDESKIKDMFNLIKGIEDLISQYNGKHKFTSTTSLTGKSNSREPTMTTYSSAGGITSHSFTTTSPKTVTTSSSHSTTESSPSHPTTSNYEVTVFDQDSHKFKVMKNLIKELKGLIEHFSDTKNITSTTYSTGDSKSFQPTATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLNTTLSITGTTTPNLTTSTHDFKDQINDDDSKSLKHLIKILSDLVYSLNDKNNIKSTSQLTTESTFNSSINITNSTTVASSTFSTTESMAIHSTPYLSTREITVFQFNDVENINPIISNNSTTVTTNIHSSTYTTSTTDNTTSYPNLSTTESSPTFDSTISHSNTSSQTRSLGSYKDKIKNIVELLKKLRKIQKTLADKSKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELEILLSTTVNPNEDTTDLTMEKLLKLFDDFERMYNVLLDDSIQSTTQSTTQNNTIFSTTYSTIFSTTQSISTTSPTQYALTSSTPNTSTTSHSSTPSSINNLRSDESNNHQPIVDAIQQLKMALYHDFYAFKKSQEERMEKILQLLNGKPIDRRTKTIAKPRTIRKKVSREIQKRNSDVKEDKIHHYKADKFIKNPKNGNQDSHIPKPILNSARSKIKDVPLKLSAIKVNGGLKHLPSKRKANEEVSAMHEIFPEPVSILPHK", "length": 1085 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O08640-1", "protein_name": "Keratin-associated protein 14", "gene_name": "Krtap14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCNSCSGTFSQSFGGQLQYPISSCGSSYPNNVFYSTDLQTPITHQLGSSLHSGCQETFCEPTNCQTAYVVSRPCQRPFYSQRIRGPCRPCQSTFSGSLGFGSRGFQSFGCGYPSQGFGSHGFQSVGCGTPTFSSLNCGSSFYRPTCFSTKSCQSVSYQPTCGTGFF", "length": 167 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O21032-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "mrpl16", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIPNRQKFTKNHKRNLITKETRKTGLVLGNYGIKATETGYLKMKQMERIKGDLVKKLKDNMDIYFNFYPLFGLTNKGTARMGAGKGEVSEWYVLVKKGSIVVEFIKSRMTAGAMQKVIRYSANKWPIKVRMTQIKQGLYEKKI", "length": 144 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21042-1", "protein_name": "Cytochrome c oxidase subunit 1+2", "gene_name": "2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKILEIYDKQIAEKEGNIFIFISKWIISVDHKNIGTMYTNFSILAGIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIMVGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVGILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVLAGGLTMLITDRNFETTFFDPIGGGDPILYQHLFWFFGHPEVYILILPGFGLVSIILSKYSNKGIFGVKGMISAMSAIGFLGFLVWAHHMYTVGLDVDTRAYFTAATMIIAIPTGIKIFSWLATLWGGVIKITTPMLFVIGFLVLFTIGGLTGVVLANGGLDISLHDTYYVVAHFHYVLSMGAIFAIFAGYYYYYSIMNSTRLFGVVRYNEQLGRIHFWTMFIGVNVTFFPMHFLGLAGMPRRIGDYPDAYIGWNLIASYGSLITAFGLLFFVVNIFTPYIRRSVNIKNGAIILMGLDFARDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEIINPTVTIKIIGHQWYWSYEYGDNASNLIEFDSYMVYERDLAEGQLRLLEVDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFMPIKVQAVKLGEYFSKLNEK", "length": 764 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21049-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "cox3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKGFFENLFRQNVRSVINTGKKVGARAAAREIINQEWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGVISSKLGLLIALSSFIGGLVIWTISIIFDSLYDQQHTYEVKRGLVMGMMMFIISEVMFFFSFFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIYLKKRNKVIKTRLYFTLLCAVVFLACQGYEYFFAPFSMNDGIYGSLFFLLTGFHGFHVLVGSILIGIITIRFIVGNFNLLNVGTNFQIYKNKSTGFACTLFYWHFVDIVWIFLYIVIYWWGSR", "length": 435 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O23373-1", "protein_name": "Formin-like protein 3", "gene_name": "FH3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRLRLAFLAISLVVFVCVSEEIFSRGGLNLLRFSVYGEDVAEQTWIHQNPRRKLISYPKKFSVSAPNLAFGPAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQSVPGPPRPPPQREKKDDILMKLIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGPRDEGPLLRLSTGSTENSPTVASTSRKMFSVASSKKRSFLSRVSLKRNGHEFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDKMANPDQKMVWHEISAGSFQFNEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEEVVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFKRIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGDAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRLQSRSFSSVKTDDSNADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFLKTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSNQPSPDFRQRLFPAIAERRMDSSDDSDDEEDSSPS", "length": 785 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O35698-1", "protein_name": "RNA-binding motif protein, Y chromosome", "gene_name": "Rbmy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSPKDGLYSASRESYSSNTKIWGIPWRSWRKQI", "length": 380 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O60309-1", "protein_name": "Leucine-rich repeat-containing protein 37A3", "gene_name": "LRRC37A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSAQCPALACVMSPLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPEPWSSHSSHFPRESPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGELPLEPEQFLASQQDLKDKLSPQERLPVSPKKLKKDPAQRWSLAEIIGIIHQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISEQQQPVQPSESSREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTPPKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEMLSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFEGLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLIVPSHMACCLCQFKNSIEAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLSYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGKNRQRLNRVLMGPRSIQKRHFKEVGRQSIRREQGAQASVENTAEEKRLGSPAPRELKQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGAPSTSSPAKALPQVRDRWKDLTHAISILESAKARVTNMKTSKPIVHSRKKYRFHKTRSRMTHRTPKVKKSPKVRKKSYLSRLMLSNRLPFSAAKSLINSPSQGAFSSLRDLSPQENPFLEVSAPSEHFIENNNTKDTTARNAFEENVFMENTNMPEGTISENTNYNHPPEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPGDQFEIQLTQQLQSVIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLVSRTGHLMKLLSGQQEVKASKIEWDTDQWKTENYINESTEAQSEQKEKSLEFTKELPGYGYTKKLILALIVTGILTILIILLCLIEICCHRRSLQEDEEGFSRDSEAPTEEESEALP", "length": 1634 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O80489-1", "protein_name": "small monomeric GTPase", "gene_name": "SARA1A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALANVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYIK", "length": 193 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80614-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSDMRDERFFYHRYLSVTNRTTPTTATNLPTSTSNMRSTSLMTPRVAHTSMSSGGDFPDDRFFHARHQSATDRAASNRSRAIMPISTTNVPSSTSNSPRVLQTSMSRRGTSPMSSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVITSSEEVANTFTQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTSMSRRGTSPMSSSTRRNVQSSMSGRETVSSSTSTSSMQTSMSTPEIMPTSSRNVITRSEEVANTFSTQTPYIQFGRLWETNTTSSTRSRTTVPTSTTNVPSSNSSRVLQTSMSTRGTFPMSSSTRMSVQASMLAPGTVSSSMSTVEIMPTSARNMITMSEEVANSFTQTSYIQFGSLWETFKTVTKLSRVAMVENGECVICLEEWRKETYVTSSTSNMRTSSLMTLTRFIDEQISLRATVSSTRTTARLLTNESPATIRAVAMLPRVAMVEKGECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCRYKLSCVYKSFLML", "length": 535 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81153-1", "protein_name": "Proteasome subunit beta type-3-B", "gene_name": "PBC2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD", "length": 204 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P00757-1", "protein_name": "Kallikrein 1-related peptidase-like b4", "gene_name": "Klk1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP", "length": 256 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P01241-1", "protein_name": "Somatotropin", "gene_name": "GH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P02762-1", "protein_name": "Major urinary protein 6", "gene_name": "Mup6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04071-1", "protein_name": "Kallikrein 1-related peptidase b16", "gene_name": "Klk1b16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSRIVGGFKCEKNSQPWQVAVYYHKEHICGGVLLDRNWVLTAAHCYVDECEVWLGKNQLFQEEPSAQNRLVSKSFPHPGFNMTLLTFEKLPPGADFSNDLMLLRLSKPADITDVVKPIDLPTKEPKLDSTCLVSGWGSITPTKWQKPDDLQCMFTKLLPNENCAKAYLLKVTDVMLCTIEMGEDKGPCVGDSGGPLICDGVLQGTVSIGPDPCGIPGVSAIYTNLVKFNSWIKDTMMKNA", "length": 261 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04644-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "Rps17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV", "length": 135 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P05817-1", "protein_name": "Prestalk D11 protein", "gene_name": "ampA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKLILLLILSSCLVLSVKSEVNVDCSLVRCAQPICKPHYRLNMTDSCCGRCEPCTDVACTLQVKYCQDGEVPTGCCPCTLPPTKPDCSLVKCARPVCKPYYRLNMTDSCCGRCEPCTGVACTLQIKYCKDGEVPTGCCPCTPQPTKKPDCSKVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQPTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPFGCCPCRENLTQ", "length": 284 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P06325-1", "protein_name": "T-cell receptor gamma chain V region 5/10-13", "gene_name": "Tcrg-V1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLRWPTFCCLWVFGLGQLEQTELSVTRATDESAQISCIVSLPYFSNTAIHWYRQKAKKFEYLIYVSTNYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVCRSGTSWVKIFAKGTKLVVIPP", "length": 135 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSETAPAASSTLVPAPVEKPATKRRGKKPGMATARKPRGFSVSKLIPEALSMSQERAGMSLAALKKALAAAGYDVEKNNSRIKLALKRLVNKGVLVQTKGTGASGSFKLSKKAASGNDKGKGKKSASAKAKKLGLSRASRSPKSSKTKVVKKPKATPTKGSGSRRKTKGAKGLQQRKSPAKARATNSNSGKSKMVMQKTDLRKAAGRK", "length": 208 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07628-1", "protein_name": "Kallikrein 1-related peptidase b8", "gene_name": "Klk1b8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFLILFLALSLGGIDAAPPLQSRVVGGFNCEKNSQPWQVAVYDNKEHICGGVLLERNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLTLKEIPPGADFSNDLMLLRLSKPADITDAVKPITLPTKESKLGSTCLASGWGSITPTKWQKPDDLQCVFLKLLPIKNCIENHNVKVTDVMLCAGEMSGGKNICKGDSGGPLICDSVLQGITSTGPIPCGKPGVPAMYTNLIKFNSWIKDTMTKNS", "length": 261 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P07647-1", "protein_name": "Submandibular glandular kallikrein-9", "gene_name": "Klk9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFLILFLALSLGQIDAAPPGQSRVVGGYNCETNSQPWQVAVIGTTFCGGVLIDPSWVITAAHCYSKNYRVLLGRNNLVKDEPFAQRRLVSQSFQHPDYIPVFMRNHTRQRAYDHNNDLMLLHLSKPADITGGVKVIDLPTEEPKVGSICLASGWGMTNPSEMKLSHDLQCVNIHLLSNEKCIETYKNIETDVTLCAGEMDGGKDTCTGDSGGPLICDGVLQGLTSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKENP", "length": 259 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P08932-1", "protein_name": "T-kininogen 2", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLITILLLCSRLLPSLAQEEGAQEMDCNDETVFQAVDTALKKYNAELESGNQFLLYRVTEGTKKDGAETLYSFKYQIKEGNCSVQSGLTWQDCDFKDAEEAATGECTTTLGKKENKFSVATQICNITPGKGPKKTEEDLCVGCFQPIPMDSSDLKPVLKHAVEHFNNNTKHTHLFALTEVKSAHSQVVAGMNYKIIYSIVQTNCSKEDFPFLREDCVPLPYGDHGECRGHTYVDIHNTIAGFSQSCDLYPGDDLFSLLPKKCFGCPKNIPVDSPELKEALGHSIAQLNAQHNHLFYFKIDTVKKATSQVVAGTKYVIEFIARETNCSKQTNTELTADCETKHLGQSLNCNANVYMRPWENKVVPTVRCQALDMMISRPPGFSPFRLVQVQETKEGTTRLLNSCEYKGRLSKAGAGPAPDHQAEASTVTP", "length": 430 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C0S7-1", "protein_name": "Histone H2A.Z", "gene_name": "H2az1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV", "length": 128 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C2B7-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "MRPL52", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALGMLLSTGVRRLHCGSAARAGSQWRLRQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAQREKFARRVVLLSQEMDAGLQAWQLRQQEKLQEEKRKQQNALKPKGVLLQNPGPSQ", "length": 124 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C644-1", "protein_name": "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1", "gene_name": "Ppip5k1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWSLTANEDEDESATAHFFLGAGDEGLGTCGIGMRTGESDSELLEDEEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELRCVIAIIRHGDRTPKQKMKMEVTHPRFFALFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPGAEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASSEGQDLQREPPAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDSDSLSSCQHRVKARLHHILQQDAPFGPEDYDQLAPTGSTSLLNSMSVIQNPVKVCDQVFALIENLTHQIRERMQDPSSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKVEIAVGFCLPLLRKILLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEGSAPAGCGFRPASSENEEMKTDPGSIENLCPAKPSDEPDRALQTSPQPVEGTGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARTHGKKLPPAGLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQVSEFLTKVCQRHTDAHAQASAALFDSMHNHQASDNPFSPPRTLHSPPLQLRHRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSHFGFSDQSSVNTQMIEEKQGLGLLQETPGDGTPEFHIELAESTQSPQEPPVEISPPGSQDDTEVNQTCQEVPDTIQPCHDILEEIGQPNQEVPDISQLLLKNHDTATNTCQPCQASQLSKKVYEEICQLCQDNPEESNQLCQEVSVELGRMVHRFPVSIGSTTQETLMEIGRPTQEIPEEPCQEFSEKVGMLTQKASAISELSQDILETDNPSQELSEETDLQAQEVSEEIDQEPEVVDELSNEDIS", "length": 1434 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C7H9-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7", "gene_name": "USP17L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALHSPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGVSDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0CW02-1", "protein_name": "Lymphocyte antigen 6C1", "gene_name": "Ly6c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTSHTTKSCVLILLVALLCAERAQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVPIRDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVVLQTLL", "length": 131 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DKL4-1", "protein_name": "Spliceosome-associated protein 130 A", "gene_name": "SAP130A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DKL6-1", "protein_name": "Spliceosome-associated protein 130 B", "gene_name": "SAP130B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DML3-1", "protein_name": "Chorionic somatomammotropin hormone 2", "gene_name": "CSH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DMV2-1", "protein_name": "Cancer/testis antigen family 45 member A9", "gene_name": "CT45A9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETAFSPKSQQEINADIKRQLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DOV1-1", "protein_name": "Interferon-activable protein 211", "gene_name": "Ifi211", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLRGLECINKHYFSLFKSLLARDLNLERDNQEQYTTIQIANMMEEKFPADSGLGKLIEFCEEVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLASERGETSATQEETSTAQAGTSTAQAGTSTAQAGTSTAQKRKSMREEETGVKKSKAAKEPDQPPCCEEPTAMCQSPILHSSSSASSNILSAKNQKSQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMFHATVATVSQYFHVKVFNIDLKEKFTKNNFITISNYFESKGILEINETSSVLEAAPKQMIEVPNCITRNANASPKICDIQKGTSGTVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVVGSGQWHNINCKEGDKLHLFCFHLKRERGQPKLVCGDHSFVKVTKAGKKKEASTVQ", "length": 425 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DTA3-1", "protein_name": "Speedy protein E11", "gene_name": "SPDYE11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD3-1", "protein_name": "Speedy protein E14", "gene_name": "SPDYE14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD4-1", "protein_name": "Speedy protein E15", "gene_name": "SPDYE15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW11-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 6", "gene_name": "TAF11L6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW12-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 7", "gene_name": "TAF11L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW13-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 8", "gene_name": "TAF11L8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW14-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 10", "gene_name": "TAF11L10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11588-1", "protein_name": "Major urinary protein 1", "gene_name": "Mup1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEKHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P11589-1", "protein_name": "Major urinary protein 2", "gene_name": "Mup2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAKLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13255-1", "protein_name": "Glycine N-methyltransferase", "gene_name": "Gnmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG", "length": 293 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P13675-1", "protein_name": "Y-linked testis-specific protein 1", "gene_name": "Ssty1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVSCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYFVKYDGIDSIYVLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFERKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P15515-1", "protein_name": "Histatin-1", "gene_name": "HTN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN", "length": 57 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P16374-1", "protein_name": "Zinc finger protein 60", "gene_name": "Zfp60", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSSSQHMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRNIMLETYSNLVAVVGRCIPKPDLIVLLEPEKEPWMAVKKETGRPSQGLETGFEAENRSPKNHVYNKKLPKQTIQQLSKTSDVQGVSVSNGPGYSVIKEPQNYQEGDANRNITNKKEMSTYTSKTLAHNKEKPYKCKDCGKCFGCKSNLHQHESIHTGEKPYECKDCGKTFRLPQMLSRHQKSHSDERPFECNICGKSFHLPTLLQYHKNIHTGLKPFECEECGKSFKSFNRISTLFQHRTIHAGMKPYKCNVCGKAFNRRSNLLQHQKIHSEDRPFHCKVCGKAFTVLAQLTRHENIHTEDKSFECKQCGKIFSNGSYLLRHYDTHTNEKPFECNICGKAFRLHLYLSEHQKTHTDEKPFKCKLCESAFRRKYQLSEHQRIHTDGKPYQCKDCWEFFRRRSNFIEHQSIHTGKKPFECKDCGKVFRLNIHLIRHQRFHSDEKPFECKECGKAFHFSSQLNNHKTSHTGQTPFECKECGKSFKRVSSLVEHRIIHSGVKPYKCNACGRAFNRRSNLMQHEKIHSDERPFECKDCGKAFTVLAQLTRHQTIHNGKKSYECEQCGSAFRLPYQLTQHQRIHYDVKPFQCKECGRAFVRSTGLRIHERIHTGEKPFQCKECGEAFQYHYQFLGHFRIHTGKNPYECSECGKYFTYGRDLKVHQSIHNLEKP", "length": 707 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P20816-1", "protein_name": "Cytochrome P450 4A2", "gene_name": "Cyp4a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFSVFSPTRSLDGVSGFFQGAFLLSLFLVLFKAVQFYLRRQWLLKALEKFPSTPSHWLWGHNLKDREFQQVLTWVEKFPGACLQWLSGSTARVLLYDPDYVKVVLGRSDPKPYQSLAPWIGYGLLLLNGKKWFQHRRMLTPAFHYDILKPYVKIMADSVSIMLDKWEKLDDQDHPLEIFHYVSLMTLDTVMKCAFSHQGSVQLDVNSRSYTKAVEDLNNLIFFRVRSAFYGNSIIYNMSSDGRLSRRACQIAHEHTDGVIKTRKAQLQNEEELQKARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHAYLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR", "length": 504 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21571-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "Atp5pf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQRIFRLSSVLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGPVDTGPEYQQEVDRELFKLKQMYGKGEMDKFPTFNFEDPKFEVLDKPQS", "length": 108 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P22237-1", "protein_name": "NADH-ubiquinone oxidoreductase subunit 9", "gene_name": "nad9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKDYKNELKVKINLGEHLRLSIPGLVKKIMYKTHYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVDCLNIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMFGIYFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVNDKKIIYKPIELMQEYRNYNFGAVWGDYERKVYLENIIK", "length": 209 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P22283-1", "protein_name": "Cystatin-related protein 2", "gene_name": "Crp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYKTLCGTQLLLAIFVLFLNFSHATAKGTRGPMEIFKKNFMEKNKLNDVYDIFKFLYNKFSHDTYLSNIKNQSFTMNTWGFGEIEVVKTKCRKIDSDFYKCSFQWEFCNIKRTPGVTIYYITLPGSVRCRKLLSKLVNCPFEEQTEQLKREICYFQLYPDYIEQNIRSVRFNCYTK", "length": 176 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23266-1", "protein_name": "Olfactory receptor 1f45", "gene_name": "Or1f45", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAVFGNMDNFLLAVMSYDRFVAICHPLHYTTKMTRQLCVLLVVGSWVVANMNCLLHILLMARLSFCADNMIPHFFCDGTPLLKLSCSDTHLNELMILTEGAVVMVTPFVCILISYIHITCAVLRVSSPRGGWKSFSTCGSHLAVVCLFYGTVIAVYFNPSSSHLAGRDMAAAVMYAVVTPMLNPFIYSLRNSDMKAALRKVLAMRFPSKQ", "length": 313 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24049-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "Rpl17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE", "length": 184 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24868-1", "protein_name": "G2/mitotic-specific cyclin-1", "gene_name": "CLB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSRSLLVENSRTINSNEEKGVNESQYILQKRNVPRTILGNVTNNANILQEISMNRKIGMKNFSKLNNFFPLKDDVSRADDFTSSFNDSRQGVKQEVLNNKENIPEYGYSEQEKQQCSNDDSFHTNSTALSCNRLIYSENKSISTQMEWQKKIMREDSKKKRPISTLVEQDDQKKFKLHELTTEEEVLEEYEWDDLDEEDCDDPLMVSEEVNDIFDYLHHLEIITLPNKANLYKHKNIKQNRDILVNWIIKIHNKFGLLPETLYLAINIMDRFLCEEVVQLNRLQLVGTSCLFIASKYEEIYSPSIKHFAYETDGACSVEDIKEGERFILEKLDFQISFANPMNFLRRISKADDYDIQSRTLAKFLMEISIVDFKFIGILPSLCASAAMFLSRKMLGKGTWDGNLIHYSGGYTKAKLYPVCQLLMDYLVGSTIHDEFLKKYQSRRFLKASIISIEWALKVRKNGYDIMTLHE", "length": 471 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25389-1", "protein_name": "Probable serine/threonine-protein kinase KCC4", "gene_name": "KCC4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTVANTETHSAAKPSSTIGPWKLGETLGFGSTGKVQLAQHERTGHRTAVKVISKSIFNNNGNHSNDDSVLPYNIEREIVIMKLLSHPNVLSLYDVWETNNNLYLILEYAEKGELFNLLVDHGPLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLLDSFYNIKIADFGMAALQTDADLLETSCGSPHYAAPEIVSGLPYEGFASDVWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDTEISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHTSASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKILYALLYRFKLDSVRGSNKKNRNKIKKTKKNKRSSTLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLLSSNPTDSSPIPLRSSKRITHINVASANTQATPSGVPNPHKRNSKKRSSKRLSYMPNTKRSSLTSKSLSNFTNLIDDDDWEYIEKDAKRTSSNFATLIDEIFEPEKFELAKREKAELQRKVQEAKRQSVNAQKINEDEFGSEVSDGMKELKKINDKVSSPLINYEFSQQELLQDIDTLLTNRYQLSSYTRPISRLDPGLTPVTETLPNNLKEKTALLQDTEKKIIETIRRSKFLGSLLNVRGGLSPGKSELAPIEESPIVSTTPLIYNDRMEPRRISDVEVPHFTRKSKHFTTANNRRSVLSLYAKDSIKDLNEFLIKEDPDLPPQGSTDNESRSEDPEIAESITDSRNIQYDEDDSKDGDNVNNDNILSDFPQGVGISQEYDMKDKNPNQSPISKSAEPTLVVKLPSLSSFQGKNASGLGLYQREPSKVTLPSLTSNNSSVGENIEDGAEKGTESEKIAASLSDDDLKEDNDKKDNDTVNAPTTVKKPPNSVLLKKFSKGKILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVLDK", "length": 1037 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28312-1", "protein_name": "Alpha-defensin 5", "gene_name": "Defa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHEELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P28742-1", "protein_name": "Kinesin-like protein KIP1", "gene_name": "KIP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARSSLPNRRTAQFEANKRRTIAHAPSPSLSNGMHTLTPPTCNNGAATSDSNIHVYVRCRSRNKREIEEKSSVVISTLGPQGKEIILSNGSHQSYSSSKKTYQFDQVFGAESDQETVFNATAKNYIKEMLHGYNCTIFAYGQTGTGKTYTMSGDINILGDVQSTDNLLLGEHAGIIPRVLVDLFKELSSLNKEYSVKISFLELYNENLKDLLSDSEDDDPAVNDPKRQIRIFDNNNNNSSIMVKGMQEIFINSAHEGLNLLMQGSLKRKVAATKCNDLSSRSHTVFTITTNIVEQDSKDHGQNKNFVKIGKLNLVDLAGSENINRSGAENKRAQEAGLINKSLLTLGRVINALVDHSNHIPYRESKLTRLLQDSLGGMTKTCIIATISPAKISMEETASTLEYATRAKSIKNTPQVNQSLSKDTCLKDYIQEIEKLRNDLKNSRNKQGIFITQDQLDLYESNSILIDEQNLKIHNLREQIKKFKENYLNQLDINNLLQSEKEKLIAIIQNFNVDFSNFYSEIQKIHHTNLELMNEVIQQRDFSLENSQKQYNTNQNMQLKISQQVLQTLNTLQGSLNNYNSKCSEVIKGVTEELTRNVNTHKAKHDSTLKSLLNITTNLLMNQMNELVRSISTSLEIFQSDSTSHYRKDLNEIYQSHQQFLKNLQNDIKSCLDSIGSSILTSINEISQNCTTNLNSMNVLIENQQSGSSKLIKEQDLEIKKLKNDLINERRISNQFNQQLAEMKRYFQDHVSRTRSEFHDELNKCIDNLKDKQSKLDQDIWQKTASIFNETDIVVNKIHSDSIASLAHNAENTLKTVSQNNESFTNDLISLSRGMNMDISSKLRSLPINEFLNKISQTICETCGDDNTIASNPVLTSIKKFQNIICSDIALTNEKIMSLIDEIQSQIETISNENNINLIAINENFNSLCNFILTDYDENIMQISKTQDEVLSEHCEKLQSLKILGMDIFTAHSIEKPLHEHTRPEASVIKALPLLDYPKQFQIYRDAENKSKDDTSNSRTCIPNLSTNENFPLSQFSPKTPVPVPDQPLPKVLIPKSINSAKSNRSKTLPNTEGTGRESQNNLKRRFTTEPILKGEETENNDILQNKKLHQ", "length": 1111 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29314-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED", "length": 194 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P33579-1", "protein_name": "Prolactin-8A5", "gene_name": "Prl8a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELALSQPSFFGTLLMLVVSNLLLWEKAASIPACMVEDGGCWDPLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQFADLSSQLIRKDETVLKAGTYCHSNRAKPKSRGVNIDIEEYLKMSINFCGFMDQPLFHLVIELSAMEGVPETILSKAKDLEENNRQLLDDLRWILTKVFPTAEIKEEFPSWDYLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQILNCLITGKDC", "length": 238 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAVIKKGARRKDVKEPKKRSAKIKKATFDANKKKEVGISDLTLLSKISDESINENLKKRFKNGIIYTYIGHVLISVNPFRDLGIYTNAVLESYKGKNRLEVPPHVFAIAESMYYNLKSYNENQCVIISGESGAGKTEAAKRIMQYIAAASNSHSESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKFNSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQFTKGASDTYKQMFGVQMPEQYIYTAAAGCTTADTIDDVKDYEGTLEAMRTIGLVQEEQDQIFRMLAAILWIGNISFIENEEGNAQVGDTSVTDFVAYLLQVDASLLVKCLVERIMQTSHGMKRGSVYHVPLNPVQATAVRDALAKAIYNNLFDWIVDRVNVSLQAFPGADKSIGILDIYGFEIFEHNSFEQICINYVNEKLQQIFIQLTLKAEQETYEREKIKWTPIKYFDNKVVCDLIEAKNPPGILAAMNDSIATAHADSNAADQAFAQRLNLFNSNPYFELRANKFVIKHYAGDVTYDINGITDKNKDQLQKDLIELIGTTTNTFLSTIFPDDVDKDSKRRPPTAGDKIIKSANELVETLSKAEPSYIRTIKPNQTKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQTFEKFVERFYLLSPDCSYAGDYTWDGDTLEAVKLILRDAMIPEKEFQLGVTSVFIKTPESLFALEDMRDKYWYNMAARIQRAWRRFLQRRIDAAIKIQRTIREKKGGNKYVKLRDYGTKLLAGKKERRSMSLLGYRAFMGDYLSCNESKTKGSYIRRQVGIKDKVVFSIKGECLHSKFGRSAQRLKKVFILTKKTFYIIGQTREQNAMKYTQDYKIDVGKIKQVSLTNLQDDWMGVILVNSTQSDPLINTPFKTELMTRLKKLNEKIMIKVGPTIEYHKQPNKLHTVRSKISDSAPKYGDIYKSSTIYVRRGHPANSKSNKKPKNPGGLSGKPIKSKKSKHKSTHKHTHSHRSHRDAAKKQPLPSQKPVNPLSLAATAAQAAYNPKPDKTVPIKSSAIPAAKVSSKHSSKPSSKEKVAVKKASSSHKSSSAKQNQVSMPPSKGVEKNKEPLKETTATATANIPIPPPPPPMGQPKDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVPVAATGAVNDVTNQKSSQIDNTISSAQEGVQFGSATVGPTSDNQSNPVGTFSDGLASALAARANKMRAESADDDDNDDGDDDDDW", "length": 1272 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36046-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "MIA40", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLRNLVVRNACRNRPSIQVARGLCRHQTRRLMASSPQFGRNSNQEKTAGFIMGILSMAGALYFIAPNRKPLFASRKVESDKTAEEELSSGGEQSPENEDDNNSKSDENGDDNDSKNDETEAGPQLGGDKIGASKVAEDGELVVLAEEDNKSSEDKDTDESKVSTKDDEQSNEDNATANNQKDENISSENSEENTSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTEDNNGEEESSKKTVSDSENSAKQSESSDEEKEELRKQEEKQMGPTEEEVQHEGAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDDEEPQDKVKVNTIESAPNVSSAKENAAKKAEQSDVKKEPLNEESKP", "length": 403 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37106-1", "protein_name": "Signal recognition particle subunit SRP54 1", "gene_name": "SRP-54A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRIPLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGIKIPKNGDMSKVIPPQMLKQMGGMSGLQSLMKQMGSAKDMMGMFGGGGK", "length": 479 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38150-1", "protein_name": "Inactive deaminase YBR284W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVQNNESVFFVECDSYKESPSTSPIRLDDLDGNDAVSDQGLAFDGDVGITSQARVRNPRAQIFEDSNTDVVLHLDDLDMVPLNTKFDMQMEMGSPMAMPAETPPPVEPLKTKDLAYSSLAHLPSYFFEQTHFRIDRKCLLEMSKLRRNYLTISKQDALSCPQLHSRVAGGYLKPVKEKLFGIRHFLDLEESNTVNLLQDGNYMTELFNSQINIPTFKEFREDFEWCLKIIRDRSLSRFSEKRLQYLVNKFPVFQHLHSKEEMRQSKKVPHKDFYNCRKIDLNLLLSGCFSQWQLTEFIWTKLRKEPDRVIHQAFNGSHITLSQLFKVNFEETGQFFNGLKIIDDSFLEWYKVIYLAKYHLVNDEMEIHTGSHGKQLRYYLIAKTFLEFDNYINGEYLAELLKTFLIKPQEESKYQLCQLSVDFQFYLHYDNSDVDNWWMVFANWLNHYNIFSNNIRWNIRISRIYPELYHTGKVKNFQEYLNLIFKPLFNAENYLHKSLGPILLKFLSQVSSIDLCIQDTDNYIWKNFTAVSCLPKDWTSGGDNPTISQYMYYVYVNLTKLNHIRQALHQNTFTLRSSCSPTSMNRTSQFSNTLNFTEHTEAILNNFLLACGGFLNAENLWNAPPSLVYLFYLSQIPMVVAPLNSIVDSKPTMLQEQAPTGLVLEPSKPYKKNPFMKFFEMGFKISLSSESILYNNSYTKEPIIEEYSVAASIYRLHSADLCELLRNSVITSGFSSTLKNKWLGVSLASHDYFVENTGFVDKWYDCKPNTSLEHNVPIIRRQYRSSTLAGEWRLIIA", "length": 797 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40002-1", "protein_name": "Transcriptional regulator MIT1", "gene_name": "MIT1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDIEPTFKGYIEDEDDALLILQATLDGKLKHIPRRPYEIERPYLIVSGSIFVFIEEISGIKRWTDGVSWSPSRISGKFLIYKELDKENAGSNANATSSGSTDSAVITDGTSGARNNPSSSKIKLPPLKNHQFDLPPTMGHSSFESEQDTSISPSNRSNLPLKYTGLVKKTISVKLKRPPFNSIENLHIVSYYSVKDIKQNCLVTPKASPFLKDVRPSQELIVAMGNTTLGNVKNNSTTTGNGPNNINNKSNSSTPLNTVISTNNNSANINAAGSNQFTSANKNYYYKNDESSGYPITQFAPALPSTTLMYTANPPYITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNTNAGNGNNPNRFHNASFAYNTTGDFINPQQQGQISYPFYYTTIPINNPNYYTTQPPNPVTNASTNENQGYSTSSTQHPYYGHPTESQSASAAAGATGTPGTAENVLPVSSMQPLLHQANNNSASSATSTAPYPVYSMNVNVPYYNSSASAYKRAQENTTSNTNAEPSGATSTNSGTMLSNPAYANSQYTPSQVYYQGFPQYAMASAQNPSMYQHQHQHPLPTVYPIATPQQNIMSSGHTLSTIGSDPQHHHYQQEPNDHKNFAMGHANNNILNITNNDTMNNLNTNTSTTTQ", "length": 666 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42222-1", "protein_name": "Enolase-related protein 3", "gene_name": "ERR3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSITKVHARTVYDSRGNPTVEVEITTENGLFRAIVPSGASTGIHEAVELRDGNKSEWMGKGVTKAVSNVNSIIGPALIKSDLCVTNQKGIDELMISLDGTSNKSRLGANAILGVSLCVARAAAAQKGITLYKYIAELADARQDPFVIPVPFFNVLNGGAHAGGSLAMQEFKIAPVGAQSFAEAMRMGSEVYHHLKILAKEQYGPSAGNVGDEGGVAPDIDTAEDALDMIVKAINICGYEGRVKVGIDSAPSVFYKDGKYDLNFKEPNSDPSHWLSPAQLAEYYHSLLKKYPIISLEDPYAEDDWSSWSAFLKTVNVQIIADDLTCTNKTRIARAIEEKCANTLLLKLNQIGTLTESIEAANQAFDAGWGVMISHRSGETEDPFIADLVVGLRCGQIKSGALSRSERLAKYNELLRIEEELGDDCIYAGHRFHDGNKL", "length": 437 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43356-1", "protein_name": "Melanoma-associated antigen 2", "gene_name": "MAGEA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQQTASSSSTLVEVTLGEVPAADSPSPPHSPQGASSFSTTINYTLWRQSDEGSSNQEEEGPRMFPDLESEFQAAISRKMVELVHFLLLKYRAREPVTKAEMLESVLRNCQDFFPVIFSKASEYLQLVFGIEVVEVVPISHLYILVTCLGLSYDGLLGDNQVMPKTGLLIIVLAIIAIEGDCAPEEKIWEELSMLEVFEGREDSVFAHPRKLLMQDLVQENYLEYRQVPGSDPACYEFLWGPRALIETSYVKVLHHTLKIGGEPHISYPPLHERALREGEE", "length": 314 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQEAASSSSTLVEVTLGEVPAAESPDPPQSPQGASSLPTTMNYPLWSQSYEDSSNQEEEGPSTFPDLESEFQAALSRKVAELVHFLLLKYRAREPVTKAEMLGSVVGNWQYFFPVIFSKASSSLQLVFGIELMEVDPIGHLYIFATCLGLSYDGLLGDNQIMPKAGLLIIVLAIIAREGDCAPEEKIWEELSVLEVFEGREDSILGDPKKLLTQHFVQENYLEYRQVPGSDPACYEFLWGPRALVETSYVKVLHHMVKISGGPHISYPPLHEWVLREGEE", "length": 314 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43537-1", "protein_name": "Uncharacterized membrane protein YFL067W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MESIILSIAIFIGVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAGSGSSISAGVGSRIGTGIGSRIGTGIGTGIGSRISTSIGSRISPDVGTSSGNRISTGVSTGISTTMNARVAVLITAAILSAPVTAIALLEARR", "length": 175 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46162-1", "protein_name": "Beta-defensin 4", "gene_name": "DEFB4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLAVLFLVLSAGSGFTQRVRNPQSCRWNMGVCIPFLCRVGMRQIGTCFGPRVPCCRR", "length": 63 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P46169-1", "protein_name": "Beta-defensin 11", "gene_name": "DEFB11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLALLFLVLSAGSGISGPLSCRRNGGVCIPIRCPGPMRQIGTCFGRPVKCCRSW", "length": 60 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47102-1", "protein_name": "ARF guanine-nucleotide exchange factor 1", "gene_name": "GEA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MHDVPMETVLAVNPATMIVKECINLCSAMNKQSRDKSQTSVAALLGGGSDIFLSQSDSFVDSFHNLPTSSYHDPLISGLVQLRLKINDLKGLDSLNALELLKPFLEIVSASSVSGYTTSLALDSLQKVFTLKIINKTFNDIQIAVRETVVALTHCRFEASKQISDDSVLLKVVTLLRDIITSSFGDYLSDTIIYDVLQTTLSLACNTQRSEVLRKTAEVTIAGITVKLFTKLKLLDPPTKTEKYINDESYTDNNLKDDIIGTTTSDNDLSSTDDDSAVADDNKNEKPVQQVIREQENDEETAEKAENVEPNYGITVIKDYLGLLLSLVMPENRMKHTTSAMKLSLQLINAAIEISGDKFPLYPRLFSLISDPIFKSVLFIIQSSTQYSLLQATLQLFTSLVVILGDYLPMQIELTLRRIFEILEDTTISGDVSKQKPPAIRELIIEQLSILWIHSPAFFLQLFVNFDCNLDRSDLSIDFIKELTKFSLPAAAVNTSNNIPPICLEGVLSLIENIYNDLQRFDRAEFVKNQKEIDILKQRDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVMPEEHHGNERWFEDAWNNLISSTSVMTEMQRDFTNPISKLAQIDILQYEKAIFSNVRDIILKTLFKIFTVASSDQISLRILDAISKCTFINYYFSFDQSYNDTVLHLGEMTTLAQSSAKAVELDVDSIPLVEIFVEDTGSKISVSNQSIRLGQNFKAQLCTVLYFQIIKEISDPSIVSTRLWNQIVQLILKLFENLLMEPNLPFFTNFHSLLKLPELPLPDPDISIRKAKMSRSLLSTFASYLKGDEEPSEEDIDFSIKAFECVKASHPLSSVFENNQLVSPKMIETLLSSLVIEKTSENSPYFEQELLFLLEISIILISEASYGQEFGALIADHMINISNLDGLSKEAIARLASYKMFLVSRFDNPRDILSDLIEHDFLVKNEIFNTKYYESEWGKQVINDLFTHLNDVKYNERALKNVKFWNFLRILISAKDRQFAVYTFLEKYIQNGDIFVDDGNFMNILSLLDEMSCAGAVGTKWEQNYENSVEDGCEAPESNPYRSIIDLSSRSINITADLLSTVGRSNSALNKNEIIAAIQGLAHQCLNPCDELGMQALQALENILLSRASQLRTEKVAVDNLLETGLLPIFELDEIQDVKMKRITSILSVLSKIFLGQLVEGVTSNETFLRVLNVFNKYVDDPTVERQLQELIISKREIEKE", "length": 1408 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53563-1", "protein_name": "Bcl-2-like protein 1", "gene_name": "Bcl2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEPERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK", "length": 233 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P56840-1", "protein_name": "Protein TCL1B1", "gene_name": "Tcl1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAFDPLGPLPVYLVSVRLGIYEDEHHRVWIVANVETSHSSHGNRRRTHVTVHLWKLIPQQVIPFNPLNYDFLPTTWKLESRNIYWATDGTHWRLLDHSQLGDTEQLILMLVLG", "length": 116 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56841-1", "protein_name": "Protein TCL1B2", "gene_name": "Tcl1b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGFYPPRLLPQVLISTGPGFYEDEHHRLWMVAKLETCSHSPYCNKIETCVTVHLWQMTRYPQEPAPYNPMNYNFLPMTWRLASMNTYRGTDAMHWRLLNHSQVGDTVQLILMLE", "length": 117 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56842-1", "protein_name": "Protein TCL1B3", "gene_name": "Tcl1b3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVHFPWMPFPPRFLVCTRDDIYEDENGRQWVVAKVETSRSPYGSRIETCITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGTDGTYWRLLDHSQMGDTLQLILDIVICEVD", "length": 122 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56844-1", "protein_name": "Protein TCL1B4", "gene_name": "Tcl1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVRFPCMPFPPCFLVCTRDDIYEDEHGRQWVAAKVETSSHSPYCSKIETCVTVHLWQMTTLFQEPSPDSLKTFNFLPRTWRLESRNTYRGADAMHWRLVNHSQFYGTEELVLMLDSR", "length": 120 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59528-1", "protein_name": "Taste receptor type 2 member 123", "gene_name": "Tas2r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSQKINYSHLFTFSITLYVEIVTGILGHGFIALVNIMDWVKRRRISSVDQILTALALTRFIYVLSMLICILLFMLCPHLPRRSEMLSAMGIFWVVNSHFSIWLTTCLGVFYFLKIANFSNSFFLYLKWRVKKVILIIILASLIFLTLHILSLGIYDQFSIAAYVGNMSYSLTDLTQFSSTFLFSNSSNVFLITNSSHVFLPINSLFMLIPFTVSLVAFLMLIFSLWKHHKKMQVNAKQPRDVSTMAHIKALQTVFSFLLLYAIYLLFLIIGILNLGLMEKIVILIFDHISGAVFPISHSFVLILGNSKLRQASLSVLPCLRCQSKDMDTMGL", "length": 333 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61314-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "Rpl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR", "length": 204 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62246-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "Rps15a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62425-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "Rpl7a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62802-1", "protein_name": "Histone H4", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P62963-1", "protein_name": "Profilin-1", "gene_name": "Pfn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGWNAYIDSLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVSITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNVTVTMTAKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY", "length": 140 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62982-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "Rps27a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNKPEDK", "length": 156 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70709-1", "protein_name": "Eosinophil cationic protein", "gene_name": "Rnase3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLKLLESRLCLLLSLGLVLMLASCQPPTPSQWFEIQHIYNRAYPRCNDAMRHRNRFTGHCKDINTFLHTSFASVVGVCGNRNIPCGNRTYRNCHNSRYRVSITFCNLTTPARIYTQCRYQTTRSRKFYTVGCDPRTPRDSPMYPVVPVHLDRIF", "length": 155 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81278-1", "protein_name": "Prolactin-releasing peptide", "gene_name": "Prlh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALKTWLLCLLLLSLVLPGASSRAHQHSMETRTPDINPAWYTGRGIRPVGRFGRRRATPRDVTGLGQLSCLPLDGRTKFSQRG", "length": 83 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83883-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "Rpl36a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83884-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P97876-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like 3", "gene_name": "Batf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQGPPAGGVLQSSVAAPGNQPQSPKDDDRKVRRREKNRVAAQRSRKKQTQKSDKLHEEHESLEQENSVLRREIAKLKEELRHLTEALKEHEKMCPLLLCPMNFVQLRPDPVASWSAHDAPDHPSFIWLGTLV", "length": 133 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEVSAKGTTISKKGFKKAVTKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 127 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01534-1", "protein_name": "Testis-specific Y-encoded protein 1", "gene_name": "TSPY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS", "length": 308 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q03764-1", "protein_name": "Ethanolamine kinase", "gene_name": "EKI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MYTNYSLTSSDAMPRTYLVGTASPEMSKKKRQSANCDKPTRRVIHIIDTNEHSEVDLKNELPITCTNEDGEMTSSSWTSQTANDFLKLAYVNAKLDPSLPSQYFKQDIINVLQSLEIPGWSVPGSKESSLNKNLLTLTQIKGALTNVIYKIHYPNLPPLLMRIFGDSIDSVIDREYELKVIARLSFYDLGPKLEGFFENGRFEKYIEGSRTSTQADFIDRDTSIKIAKKLKELHCTVPLTHKEITDQPSCWTTFDQWIKLIDSHKEWVSNNVNISENLRCSSWNFFLKSFKNYKRWLYNDSAFTSKLLREDDKDSMINSGLKMVFCHNDLQHGNLLFKSKGKDDISVGDLTIIDFEYAGPNPVVFDLSNHLNEWMQDYNDVQSFKSHIDKYPKEEDILVFAQSYINHMNENHVKIASQEVRILYNLIIEWRPCTQLFWCLWALLQSGRLPQRPLIEGEKLMSEKAGLGDETHLMEHKNKENGKYDCSEDDSFNYLGFCKEKMSVFWGDLITLGVIDKDCPDIGKTDYLDTKLIF", "length": 534 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04902-1", "protein_name": "Probable glutathione-independent glyoxalase SNO4", "gene_name": "SNO4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKIFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNRAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYS", "length": 237 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0D2J5-1", "protein_name": "Zinc finger protein 763", "gene_name": "ZNF763", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPVACEDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSIGKKWKDQNIEYEYQNPRRNFRSLIEGNVNEIKEDSHCGETFTQVPDDRLNFQEKKASPEAKSCDNFVCGEVGIGNSSFNMNIRGDIGHKAYEYQDYAPKPYKCQQPKKAFRYHPSFRTQERNHTGEKPYACKECGKTFISHSGIRRRMVMHSGDGPYKCKFCGKAVHCLRLYLIHERTHTGEKPYECKQCVKSFSYSATHRIHERTHTGEKPYECQQCGKAFHSSSSFQAHKRTHTGGKPYECKQCGKSFSWCHSFQIHERTHTGEKPCECSKCNKAFRSYRSYLRHKRSHTGEKPYQCKECRKAFTYPSSLRRHERTHSAKKPYECKQCGKALSYKFSNTPKNALWRKTL", "length": 394 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0WX57-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 24", "gene_name": "USP17L30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LYG5-1", "protein_name": "Elongation factor 2a.1", "gene_name": "eef2a.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MENFNVDQIRATMDKKSNIRNMSVIGAFDHGKSTLTDWLVSEAGIVSSARAGETRFMDTRRDEQERCITIKSTAISIFYELAEKDLAFIKECKDGSGFLLNLIDSPGHVDFSSEVTAALRITDGALLVVDCVSGVCLQTETVLRQAIGERIKPVLMINKMDRALLELQLVPEELYQIFQRIVEKVNVTISTYAEDEKGPMGNVMIDPVIGNLAFGSGLHGWAFTLKQFAELYVKKFAGKAQLGPEEYIKKVEDMIKRLWGDSYFDSTTGKFSESATSPDGKKLPRTFVHLVLDPIFKVFDAIMNFKKEETVKLIEKMGIKLDVEDKEKEGKILLKAVMRCWLPAGEALLQMITIHLPSPVTAQIYRCELLYEGPGDDEAAMGIKNCDPKAPLMMYISKMIPTSDKGCFYAFGRVFSGCVSTGLNVRIMGPNFTPGKKDDLYLKPIQRTVLMMGRYVEPIEDVPCGNIVGLLGVDQFLVKTGTITTFTKAYNMRVMKFSVSPVVRVSVEVMDPADLPKLVEGLKHLAKSDPMLQCIIEDTGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPFASYRETVSDGSKQLCLAKTPNKHSRLFMKACPLADGLAEDIDKGRVTASQEMNARAQYLAENYKWEVTEARKIWCFGPEGTGPNILVDLTKRVQYLNEIKDSVIAGFQWATREGVLCAENMRGIRFDIHDATLTSTAIHRGPGQIIVATRRVLYGCQLTAEPRLSEPIYLVEMQCPESVIGNVYGELVRRRGVVFSESQVMGTPVYLLKAYLPVSESFGFTADLCANTSGQAFSQCVFDHWQILPGDPMDPTSKVAHIMADIRKSKGLDEAIPALHCYLD", "length": 854 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1PEY5-1", "protein_name": "Probable 3-hydroxyisobutyryl-CoA hydrolase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERVEDEEGWEDLKFPPRNNLPALAIAAKL", "length": 378 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1ZXA5-1", "protein_name": "ADP-ribosylation factor-like protein DDB_G0292332", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDFIISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETILMSQNNNDDLIKCINWIFSN", "length": 186 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q1ZXJ4-1", "protein_name": "Acetyl-coenzyme A transporter 1", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHKHATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFIETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYASTCQTIGLNTGYFLSYTIFLTLSSPKFANKFLRSVPSEEGIITLPGYLQFWGILFIILSIYLAFFKDEESTTITTTTTRHDNYNNNNNDDKNKQVKSKIENESIESKSMRSSPSSLSPSLLSSPVKKQNKKNKQHISIDKKDITIIKENNENNEIIDNNNSNNNYDNGKKSIVQETYGMDISESDLTPKQVYYLLWKIITLPHIKILSILFIISKIVFQPNESALNLKLLEKGLRKEDIASFSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEISWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLFILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNISKELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL", "length": 618 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q23888-1", "protein_name": "Large ribosomal subunit protein uL2m", "gene_name": "mrpl2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVLNWRGVKSRLYSGKRRIDGRNKGLIAIRSRGGALKRKYRYIEHYKQKWMDKWLFVMRIEYDPNRSAHIALCSILKEGIYFYVISIAKLEVGSLIITSALKLGTLQVGNTTKIKNIPEGLLINNIELIENSGSKISRAAGTSSLIIKKYNKKYSLVKLSSKECRLISNECYATIGTVSNIERKLKQNKKASYSRKRGIRPIVRGLAMNPVDHPHGGRTKGGVHWKSFSGKLAYNVSSRKKTKMTSRYIIIGHRKQKIMDKQIKNG", "length": 266 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q24113-1", "protein_name": "Protein no-on-transient A", "gene_name": "nonA-l", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEGAVKKNSLNSSPLPQRQQRGNSTNKNLGKPTPPKLNAASDGNPAEKKARLGGNTQNGGGVAGGGGTGGGGGGGGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQKQINESPKPAAGNVPAKNNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGPNFRGRGGGPNQPNQNANQEQSNGYPGNQGDNKGGQGQRGAGGGKHQRGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAPNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRYQNQLLRHEEDMRARQQENDLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGNNSNNSTMAGPGGPDNSDGNQHGHIDSWGHRRF", "length": 630 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2PRK7-1", "protein_name": "Odorant receptor 106-10", "gene_name": "or80a10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANETFVKNVDSFIITGFDHLQNQKLLGSLILISYMFILLGNGINLCIISTDRHLHKPMYILICNLAVVDIMYSSTCSTTMISVLLAEIKTVSYYSCISRTYFFNLGDLTECMALTLMAIDRLIAINLPLRYHSFVTNSRILWLIFLTWIFSFAVIGFLTYVADTLPYCQPIIKYVFCSYSSLVRAACVDPEPYFAISTVYSMVTLCGLFPFILCTYAVLAYSVTKLANSSRKQMINTCLSHIIVLFSFYLPKIVYILLTRIGLVLTLTERNAVLIVSCFVSLLVNPTVYCIRTKGIRKRITDIFLYTQKITK", "length": 313 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ5-1", "protein_name": "Uncharacterized protein CXorf66 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIVIGTLITGYMVSCTCLLHYSCDSEEAHTAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKPVSQVSPSYPEKAIKSTWPPSLQCRAKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSRNN", "length": 361 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3L180-1", "protein_name": "Alpha-defensin 26", "gene_name": "Defa26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALFLLAFQVQADPIQNTDEETNTEVQPQEEDQAVSVSFGNPEGSDLQEESLRDLGCYCRKRGCTRRERINGTCRKGHLMYTLCCL", "length": 93 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TR54-1", "protein_name": "Gasdermin-C4", "gene_name": "Gsdmc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDKLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKKMTFPDRPLKLYDLPVTLRYQEEVIETGSWIDDIDPIGTIEEPANLNFMCLQHEVSEQTQLLAELSKDVQEVVFSSFLHMLSDRDVLYDLMKMLELNQLGHMDGPGGKILDELRKDSSTPHDVLKDLNLYLLQALLVLSDTQLCLLAQSVKMGLLPHQVELVKSILQTNFKYSSNTPFTLQPQLLAPLQGEGLAITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLQKANSSSKPSLSPGYI", "length": 480 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U0I6-1", "protein_name": "Endoregulin", "gene_name": "Erln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQMVPPRSIQNEDFWKNPWDVGGLTVIGLFTSTFLLFVLFAVVFGYVEKAVFEEE", "length": 56 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URS2-1", "protein_name": "Zinc finger and SCAN domain containing protein 4F", "gene_name": "Zscan4f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIMQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3ZCQ0-1", "protein_name": "Required for drug-induced death protein 1", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVGARLRSKASSLVGRGPLGRLRRAGDEETDAIVEHLEGEDEDPESQDCEREEDGRRAGTPSARRVHLAALPERYDSLEEPAPGDKPKKRYRRKLKKYGKNVGKAISKGCRYIVIGLQGFAAAYSAPFGVATSVVSFVR", "length": 140 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI3-1", "protein_name": "Defensin alpha 3", "gene_name": "Defa3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTLTLLTTLLLLALHTQAESPQGCTEDQKLLIMEDQDISISFTGDKGTALQDADVKSGVICNCRPRGCSFKERVYGECGYNGHILRLCCQPLNTMNKKSPSVI", "length": 104 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI6-1", "protein_name": "Defensin alpha 8", "gene_name": "Defa8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKTLVLLSALVLLAFQVQADHIQEAEEETKTEEQPADEDQDMSVSFEGPEASALQNLEIGWPLKQCHCRKFCRPYEKAEGSCRPGLFIKRKICCIQQWTPGRT", "length": 103 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4KL71-1", "protein_name": "Small proline-rich protein 2A3", "gene_name": "Sprr2a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q504N7-1", "protein_name": "Pyrin and HIN domain-containing protein 1-like", "gene_name": "Ifi214", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNKMQDEYDRVKIADLMEDKFPKDAGVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNEDAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQTSSRSSETLQSIIQSPETPTRSSSRILDPPVSLGTAYSSAQALGVLLATPAKRQRLKNVPKEPSEENGYQQGSKKVMVLKVTEPFAYDMKGEKMFHATVATETEFFRVKVFDIVLKEKFIPNKVLTISNYVGCNGFINIYSASSVSEVNDGEPMNIPLSLRKSANRTPKINYLCSKRRGIFVNGVFTVCKKEERGYYICYEIGDDTGMMEVEVYGRLTNIACNPGDKLRLML", "length": 393 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54B59-1", "protein_name": "O-methyltransferase 12", "gene_name": "omt12", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDWDKTMDLLFGFVTGHIHSRMFETILKFSICDLLEDGPKHYSEISKIIGFKNESYCYRLMRYFVPYKLFNESVVQVGLFSKTPSSTQFSKNGTLKNLGRFHCQDHHYRIFESLPKTLEMGKNQGPSSIGLSSFWEHFETDESYKQLFHNAMKDYTSLIIDRLISKISLSPNFKTVVDIGGSHGFLIGKLLESNPNIHGINFDLENIINSSTSKNENFQHPRLKHVSGDFFNSVPEADCYILKYILHDWSDEKCITILNNIHKSLKPNGKLFINDLVLDPSNYTKEAVFKDILMMQYFDAKERSINEWHQLFEKCGFKIDSVDTSISPQLMIVSKINSSNINLNDCTNFNSEIVEEKLKNSLPQFVNC", "length": 369 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B60-1", "protein_name": "Probable inactive O-methyltransferase 11", "gene_name": "omt11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MECSESLELVDKFACGHILSRMFNVVMKHSICDLLEDGPKHYSEISKIIGFKDDSYCYRLMRYFVPRKLFKESVVQVGVFSKTPFSTEFSNNGTLKKLAKFHCNSFHYKLSQVLPETLEIGENQGPSSIGLSDYWEQIEKNEIYKNEFNDGMIGYTTHILKFLKGKIDLSKFETVVDIGGSHGYLIGSLLDRYPNVNGINFDTDMVINSSNEKYQHPRLKHVAGDFFKSVPEADCYLMKLILRCFSDEKCCELLKIISKSMKSNAKIIILDIILDSSKYLNFDTYLDILMMETLDGKQRSLSEWIKLFEMSGFKIDKYESGSPNYLIISKE", "length": 331 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B86-1", "protein_name": "Hly-III related family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPRLDHKKNKEEKDNEPLMMVNNYNIGIQTDNNQEDIQNDYHHFNDLSINIKNNKNNNNNNNKCNSLHHKHYHNRFIINGGNNNNDNNNNNNGDDCCANIELFVDLMLSENEYILSGFRLHTKNSYMECTKSIFKLHNDTLNIWSHLLGALFYLVLFFTSIIKIIKLNNNDGGGGGGIGNNFILNSDEIKLLETIDLPSNFNYLFFQLSCFICFLSSTIYHTYRSHSIVVFKTTLMLDVASIALLILSSVCLIIDSELSCWPYFKRIYLFSFLILILISFLSLPKIMREKRYGLRTFLFAILALQGLVGHLFKIYLQGYFDKDPNQFYNLIGAYTLFGLALSIRRFKVPESFKPGHFDVWVNITFNIVYNII", "length": 372 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54BG8-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGKIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54C66-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKTKKYKNPFPTNSYKEPENDSDNEYILHNEEDNEDYGSNNNNINNDGFSYEDNIENSDTEDEREDYGYINYNTNNEEDDEPIDLSTPIKKKKANNKSFKPPYKNTTTTTTTTTTTPPTPPPSKSNNNNNNNNNNNNNNNNNKNKENINKESEYELNKFLDLYNDFKSESDNKVKPTATTTTTTTTTTSTSTSKLNKDKKGVIVIESDEEKEDNTIKINKRNGKRKEGEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGNEDNLKSENFNKFKKLKSFSNQPTPLPPMLSNPFLNNSGNSHNNNNNRILFNSQFTNASNLNNNINNNINNNINNNINNNINNNINNRNNNTNNYTNNNNNNNNNNNNTNNNNSNNNINNNNYNNNNNNSFSFLPIRSNTLPTIVTRRTGIQSSSSDNGNSNSNHSSSMNKRNTSKSNNKKSTTTTKTVLPPPLSSRTQEEEDYALALSISEGLNGGSGGGSGSGSGSSDNSTKTKRSKSENDLPNEETRHQVEMDRRFAEQLHREQHENINQIQQLQRRLHLNQQRTNNINRNHHGDEDEEDIEMLNLRAYQQIQQQFNQHFNQQLNQLANHPLANLFSHASRGRGRGARRIPHHPHHHHHPHQAQYLTGLSQEQLNLMTRDFSSNDYELLLQLDENINNKGATTSDIENLPVHTLNKPTATTTSTTTTTNSSTSDDNKKNEPTTDVTCCICLCEMEPGDAVRTLPCKHFFHVSCIDQWLKVNKVCPIDKKAIDEK", "length": 766 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54CY8-1", "protein_name": "Obg-like ATPase homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKGIKLFNNFTNTKQILFFRSFSTAAKGDRLKASHYVKTRGSCKSISIVGLPNIGKSTFFNALTSSNAAMAANFPFCTIDPNIGKVFVPDERLDYISDLLKTKSKIGVQLEFVDVAGLIKGAADGEGLGNKFLGNIRQTSLICHLVRCFEDKGITHVSDEIDPIRDIETIETELILADLQSLEKMLTEGKKKQSNPELQMKFDLVKRISEYLHKGLPARDVEITDMEWPVFHSLHLLTSKPTIYTCNVAEGDAATGNKYTDLVKEYSKSKGLEIEPVVISAKIESELANMEGNDETKKEFLQLYGLENNGLSKVINGAYKLLGLQSYYTASSNECHAWTFKAGWTAPKAAGVIHSDFEKGFIKCDTISYNDFIECKGDEKIAKEKGKQRSEGKAYIVNDGDILFFKFN", "length": 409 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54D44-1", "protein_name": "Probable polyketide synthase 42", "gene_name": "pks42", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIESQREFNCIGGDNQNGVAVIGVGFKIPLDLENCLSSPSELYSALFNEFDSVTKNTSSRWSDNYFKNGDIVSLSAGLLPLREIKSFDPTFFGINPSDADLIDPQQRLLLKCVWNALEDGGIDPISIRSSDTSVYIGCSTIDYFLLNRNPVDPHNHGIQTASYSIPNRISYCFDFRGESLFVDTACSSSLNAVHLGYNSIINLKSKLSIVGGSNLILDPQNSIFFSKQQVNGPSGKCNSFSEEADGFVRSETVGVVVLKNLKDAIKDGDRIYCVIQGSNSNVDGNYEKLNYISPSKLSQAENITKALKSTNGAVNASDIDYFECHGTGTPTGDPIELEGISIALNRTQQSTTLSNPLLIGSIKSNIGHGEASSGIASLIKCCVMFKYRQFLPNINFKTPNPLIKFKEWNLKVVTEPVPFNNNKQTIMAINNFGVSGSNCCIILSEYKSNNNNNNDFKATTHLKSKKFIIPFSSNSSTSLDNYKSLLSNETNNFQDFVIKQINNKSTSLIQRSVIIASNWSEFNESSNEIQSNIKKSIISNITIKKKNAVTVFVFCGQGSQYNKMALSLYENEHIFKSTMDKLDKELSKHYGYSILEKLRSITDEDLVTIHQPILAIPVNVMVQVSLYELYKHWGIKSDIMVGHSFGEIACSYCSGMVDFKTLCYLTYHRSVAQNKTIGSGKMLSINIGAKEYLDSYSTKYPSVEIACYNSETSIVIAGNEELLNEISKDLKSKDIFTAMLPSLSAFHTTHQSVIKDDICSLNFKSTLSKITVFSTVTSNQFGINNNNNNNNNQLNSNYLFQNVIQPVKFSETISNIYKYIESNDMGNEITFIEIAPHPTLQYYLNQMKSQQSEYFNNGEKISIYSACNKKKNDYNEFLKTISTLFVNGYNNINFKSQIINNNNNDNNNNFNLPLYQWDDNEYYKIHPTWKKANKNGPSINHLGNLNDSSIKSFKTYINTRKPQFQWLKGHSLKGKVVFPGMGYISNLLSVYNMNQDITINEIQFKSAFILVDGVNNCLETSIVPLTKNEFNIKFHFKDLKTNKWVLCANANYSLFKHNDNNDKLDIEKLKSNCNYTIISKDELYNNIRAKSGLIYKGLFQGVKEAFIGNRCSLTVLSLNEIENQQEFKHLLENRNFNSLFNTAILDSCLHGSLHSKEQSQIYFDKCEGFKYYSNNINLATSKRNEYKEINVYIETNPVINSTVIVSLKIMLPDGTLLIEIQKVVCKSSIPIIDSTSVIQPSPKDLHTPYYQPKNSLIKPPQSFKHLHCMKEFASIESDNREMVYMSIYHLIFKAINARSPTKINLESLENLTLDQFKELIKDSAANIQRSNQFIYECLKLYHTNHSNYKKNQIKDFIKECEDFNGYNQIIFKTIKIYAKSLFPLPDDDPFTDTIQSLFEDDQLENVYIHLKHLYPVNNLLSEIVFQSIKPIINQTSTFRILEIGAGYGTISQLIFDKLEQLLADNFTSSRIDIEYTFTDISNTFLPRAKERYSKYKRFNIIYKLLDLELPLTEGIQDFRPLYYDIVVMSNVLHVVKDINFSTNEIYKVLKQNGQLIFVEPTYKNLYLDTIFGIFPQWWSFNDDIRTDRCCLEPSKWFEFLETINFKDTIILGQDNKEILKNVENSIILVQTRKPSQLELSINNSPSTNQFKSFENIILYTDDNQQPNDCSEIIDLLKSLELPIKIINNIDQFNQIIKTQYNNNNNNNNNNNNNNNNNNNNTNNNLIIFLKSVNQLNTNNYKDITFEYVQINQILVKLELEENYKLLLITNNSQSSNYLSNSLIGTSRYLFADIVSSKLDIITIDFDTVSIKNHQNVISVINHLLDSKDNSEREYYIINNEINIERYKNESNIKHQLKSKTFQENKDELMVQLDSNLEYRLKSKSKQELKSTHVEIQVKAIGINYKDYATYSGLIDSIIEIDKDKEKDENYDQNYPSIGNDFSGVITRIGSDVRKFKVGDEVCGLAPKTSASHIITEEGYLCKKPSNISHSEAASSVTVYTTSFQSIYSIGDLKKNETILIHSGSGGIGLSALEILKWKNHQGYIFATVGSEDKVKYLTDTYGSFITGIYSSRDKDYQDQIKEKLKSLGCDIDHQGVDLILNTLSVEYMDSNFKCLNQKGRCIDLSITHLTPFDYMDYNKFKFNVSYGNIELVVLPSKIIKDHLKKMLKAFSLGSLRFIPIVEFSNLNIRNAVEYINQRKHIGKIVVKNDVDFINKLFIEQQQQQNSVENNEILMKDKYDISNLELGKNILLTGQTGIILTILKWLYKHSNNSIENIIIISKSKLKWELELFINESTNNRIKIHYKQADVGNNNELNQCFEELRLRHSIEDINSIFHFAFINDIGQFEDVNMNRMDIAHHAKAIGSLNLHNQSIERKWNIKQFVLASSALSVFGGDNQCCYISACSVLDSLSKYRKSIGLPSLSINFGGVTSTGFVSRSGAVEANLESSIINLITPQSLISSLDLFIQNSQTFSNYTHFNFIYDNIESYSLNRMLFKFDYLINQHSSLVSNKRLGGINENNNIGDLLVSKIGELLSIEPSKLNLDFRLVDYGLDSLVIVQLKNFIDKQFQPHLISILQLQNNKISTTIEIIIKGYNNNQNKKIKNEQSNDIPSVVQKETIKDNNENKDDIKIDMDDKKENLKGKKENIDDKKENNN", "length": 2655 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54E06-1", "protein_name": "Transmembrane protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTIINNDNISLATSAKLSQFIVSGDYKGPFTIIGLKTKILSFSLVIEFILLKIELIKERKDGLKINFDDSISGSCNYELNYTKQDTLFQRFQSKFKIEHTINPENGETINTGITLKKLFIISIPMSILFVALNWIWMLAISMTEVSISTALYLKILKTISVIIFMGGIVGIAITTVGTSKGEYPHAIKGEILMIISAAMWGLYEVLTSKFIGDANRTIVHTYMGLIAFVNLILGIPVIVILNVTNFEPFSVPSISVFGMLLLNAFVGFSVNYLINWGLSVTSPLFVRSGELMVIVATLLFDIIIKHMKLPLLALPGYSLIVIGFILSVYIESRDIKQQQEKEKEKQKNNNGETESLLNY", "length": 359 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EC9-1", "protein_name": "DUF781 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKIILIFFLINNIFSIVVSSTKLNPWVFEERIKLYDILINSTKVEIFGDDNLNNCFQGFKIQLEWQKTTGRSMIIDNSNISVNSWWGSMNYYESIIPFISAMNLGIIQPPIELVNIGDDRFCTDYSECDKELMEPWDLYFQFLIKIKDEKYSYSIQQQILKYNWDGHMKSLSIGLKLFNDKLNYLSKNEIKFSTGFVHFVDIISLINFNTNYSQILPIFDSLPPRMLTNSDHPPFFKGFTRTQNFYTVSVLSINELHENQILWNYFLNLLKTKTENEKCRDFINQEIINFTKYPESTLVKLLLKLLLNNC", "length": 312 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED6-1", "protein_name": "Probable polyketide synthase 41", "gene_name": "pks41", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDSKNLVDENCNKVAIIGIGFRFPNLKGDITPNELWSKLLNRYDGIVKNDRWNESFFKSGDISTNYAGFIPFEELKSFDPLFFGINPSEGIHMCPQQRLLLKCTWEALEDSGIDPIEIRGSNTSVFIGCSGADYQNLNKNDNKVQQEIFSSSTHSISNRVSYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNISKSYSRLNILSKDGKCKSFDAGADGYVRSDAAGIAILKNLNDAIKDDNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGQVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSDNPLLIGSFKPNIGHTESASGISSLIKCCLILKNQCFVPNLNFNKPNPLIKFDQWNLKVVTDPIDFSTLNYINKRVSIAINNFGVTGSNCCLIVSSFKGNQIRNNINNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVVIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNVTMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLNEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKKDGVFCAILGSPTSFHTSSQLSVKDEILKISFKSKQPTIPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEVIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSDHNNTNNQTRVNLPLYQWEDQEYWKLDNLHQYHLSNGPSINHLGISNSNHTPIKSYQTHINIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGESKTDTNPNKELPDILISFIEFKTPLIFMDGISQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGPNLNEDDEQSLFMYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVDKCYLGYNCSLSEISIIQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEELTYYSSKVPKTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDPLAMEYPTNEIYSCNLQSKDSLIPSLSSFDHIFKRKIPNEYVDQINIYESFIPKLLFSNINKRCPEITIDEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRFNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIIGDGIFGVFDQWWSFQDTEIRKDRCCMKQKTWYKLLKSVNFNDDIRMTPELTCFVIQAQKPSISNLSFSKSETTNYDSIIVFGNKYASNLSNHFIKSIDNGNLQFISTIEELNKIGKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNCKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITRISTGSKEFKVGDHVYGIGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITHYSIEKVKESIEFINERVHMGKIIINHENQDSIINELIEKQKSINKFDQSIFKQNYKLEPSLLGRNILLTGQSGIVLEILKWILRNSENNSIGNIIILSKSSIKWEMEYLINKVKLINKLGNFFNNIKFHFKSVDISDSGLIDESINKLLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKLKNFIMSSSVSSKTSTANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIESTGFVSRNESVAALLSGEGFIPISANLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISEILSTDILKLNKDIILVDYGIDSLVIIQLKNWVDKEFSIPNELTIQKIQNSTINSFIQLVKNSMDKNKK", "length": 2542 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED7-1", "protein_name": "Probable polyketide synthase 40", "gene_name": "pks40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDYKNKYQSNENCNKVAIIGIGFRFPNLKGDLTPNGLWSQLLNKYDGIVKNDRWNESFYKTGDIPTKYAGLIPFEELKSFDPLFFGINPSEVIHMCPQQRILLKCTWEALEDSGIDPIEIRDSNTSVFLGCSNFDYQNLNKNNNKIQQNIFASSSHSVSNRISYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNTSKSYSQLNMLGKDGKCKTFDADADGYVRSESAGIAILKNLNDAIKDGNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGGVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSNNPLLIGSFKPNIGHSECASGISSLIKCCLILKNQCFVPNINYNKPNPNIKFNQWNLKVVTDPIDFSTLKLSNKPISIAINNFGVTGSNCCLIVSSFKGNQTNNNNNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVAIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNATMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLSEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKQDGVFCTILGSPTSFHTSSQIPVKDEILKISFKSKQSTYPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEIIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSNLNENDNIQTSLSLPLYQWEEQEYWKLDSLYQHHLSNGPSINHLGISNSNHTPYIKSYQTHIDIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGDNSESTTNPNKELPDILISFIEFKTPLIFMDGVNQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGQGLNEDDEESLFKYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVEKCYFGNNCSLSELSLSQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEGLTYYSSKVPTTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDSLAMEYPTNEIYSCYLQSKDSLIPSLSSFDHIFKRKITDEYVDQIKIYESFIPKLLFSNINKRCPEITIAEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRVNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIVGDGIFGVFDQWWSFQDTEIRKDRCCMNQQTWYKLLKSVNFNDDIKMTPELTCFVIQAQKPSISNLSFSKSETTNYNNIIVFGNKDDSNLSNNFIKSIDNGNLQFISTIEEFNKMTKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNSKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITNIGSGNKEFKVGDSVYGTGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITEYSIENVKDSIEFINERVHMGKIVVDHENQDSIINELIEKQKSIDKFDQSIFKQNYKLEPSLLGKNILITGQSGIVLEILKWILRNSENNSIDNIIILSKSSIKWEMELLINKTKLLNSNSINSMGNYLNKIKFHFKSVDISDSGLTDKGIHELLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKIINFIMSSSITSKTSSANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIQSTGFVSRNESVAALLSGEGLLPISTNLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISELLSTDILKLNKDIILVDYGVDSLVIIQLKNWVDKEFSIPNALTIQQVQNSTINSFIQLVKNSIDKKNKK", "length": 2552 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EN3-1", "protein_name": "Alkyl transferase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNCSNNSENCNINDNKKKEENVKNQNSNKNSNNNNNKSNIESIILNKKSKFSSEKELDEKENKDLKDLSNNKPINIDEYEGLPRFENEQNARSKSSLWSKLCDWMYDQNFKIASSTLKNGPIPKHIGVIMDGNRRFAERNHLETKEGHKKGFNTMLDLCQWGLTLGVKIISVYAFSIENFKRSKSEVQDLMELANNKFTEMISKSHKLQQLGVRIRVVGDHSHIPEKTKSILAKAVKSTENNTKALLNICLSYTSHEEILHSMKILSKGVNQEKKIEIEDIDQDLFENCLYIKEDLDILIRTSGEYRLSDFMLWQSCFTNLALVNTLWPDFSFFHFIYIIFLYQFNSKTLKNEIQNQYKFNNNNNNNTDNNNNLKENIKNLKSDQRVKEFINHLKISEEKLFDEFISKYNEEEEEEEEI", "length": 420 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54F52-1", "protein_name": "Saposin B domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLIFIVCLLLIFNYFIGISFGNKQINSNQQQQIINTDKNYNHNKNNKIIVSHNKNNNNNNNYNEIETENLGCTFCKYLTEKVEEYLQANSTEKEIISYLDEECELLNSPNLVLTCQNLVQQYTPIVIELIDNNESPSVICENVNICPTSSSSSSSSSIEEEIIKKLNIDDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEEEEVNTCEICNLVSNLIEKYIKINNEVDEIRELIENECELLSNSKVSSCYSLVDQYFEHFYVTIENNYSANEICQLFQFCPIESSSSSSSSDIINNIPLQDSGCTVCTVLANYAYKVQANESIPEIIGSMDEICNKIGAWRDICNSIMRSGGQQLVEDIVNKGEGVYTACSNIGYCQSSSSATGTSGFSSGGSGTSTGGGYSTGDFYYKPLK", "length": 416 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54GT5-1", "protein_name": "Endoplasmic reticulum junction formation protein lunapark", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLFSKKNGFEKQLLDMETKILNLEDKLSNSRIFHQKVLHKIVLYSFAIEFFIILFTYVKSRSLESIPEKLFCCIYLVLFPIFILILTKVYGFVYKYLIKKNEVRLDSLKTGLQKKLDERKRETDYENTQKLLDRYEKNPPSPTNKPLGPPNLNNNNNNNNNNNNNNNNNNNNNNNNTLGNSMRNRNQPFNISSQQNQQQQRMIQPQQLSPQQLQLLQQQQRLSQQIVPSQQQQSQSQPQQQQPILNQPYNINNNNNNNKPPPPIQLPPQQSSQYIGNQQRLPPQQYQNEQKSKWWLDKLVDYLISDGPTHGSPLICSNCHSHNGYVPVEELSNIQFRCRVCKTFNQRDSVNNSTTNDDRNNSQNTGSNQQQSQSLQDQQPSIEEIDKNFSVTEQKNETNNENYSDSEKQLEENNNNNNIDNDSGSSSSQNTPNKKKGKGKGKGTPTKKTN", "length": 452 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H60-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLDFFHLKDVDEFFRLLEKKNLQNLDNQIDGPGNLNWRTTYTEKDFSKVPKFRGIIHIVQIRDLGTKIHRDLLYEIMFEKLLDIARLNNESKLLKNEIQDLKTKLDEYHNNNSTTNTDLIINSFINVIDTTTTTTTTKTTMGATSIDKKQSEGDSIDKSIELDFFKIKSDQSQQSSPSHKLEEKQNQVNNITNEIPQESIKTVKQQTQTETNQQTFSSTSPSHQNEEKQDKQEEVKQEEVKQKEGIQKEDKKEEDKKEEGKQKYGEIFIIEIPQEEEKQKEEGKQQDGENFIIEIPQEEDKQKEDKKEEDKKEDKQEEDKQKEEKLEDKQKNGEEFIIEIPQNETLEIKVDTHPRSSNDDVSTAEMEVEALKTPLFAETTFVTKQQVITNKKLLVYKQSDFFPNMTTLLQSRLKDVTVQEVKDLTKIGLNDNSYSVGDFENVFVLYAVSCMGARTDSERDAFKIKSIRSIIGDKVPIIYGVFMIGKNGPTRIKVEHTQTSISITHSMSDIGRNLQNNENLKQLQSFLQQ", "length": 529 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H72-1", "protein_name": "Tudor domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNIDFEDYEFYDDSDFEINTVDESVMTYSSVFDFLRFGKIPKFDTQTKMKHFKDNISKYRIESKDILHTNVDSKILRRLSEIPRVEKIFPDPNTLQLEVFKPNHELRNSNGELLSKHRPLQETLKLIEKQYYWECKFIHTSMEVDITKLYSFCDLCSQSSVSRDMDIDSNDEDKILEQMDIVEKSFSNDRNNNNNNDDNNKSIDEKDKMNICGIGIDLEAIKEGKLFEDELAEALGFPEYNSSVDNSFNSSVNNSNLNNSSLNNSLNNSKNNNNNDDDNNNNNNNNNDDNNNNNNNNNNNNNIISNIDNNNNNNNNNNNISNIDNSNNNNNNNNNNNNPVNDDFSFIIPKDYQSKNHLNDNENKDDEKDDDKDDDKDDDKDDKDDDKDDDKDDDKDDSKDNGYIKTNVSLSSSSSSDNERDDGDSHSDKSVDNDENNNNNINNIISDCNNNNNNNNNNNKINGRTFTSRRTRSDSNTSNSSVGSYISNSSKSSANSYDFSSSDQDYKSPNSPTVKKTRGASLVNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNSILKPKLKSKRASASTAINSFISQFITPKHPPKSSSRLKRANRSNDSSDSGDSSSNNSSRSSSDSSDNENNNSYYLPIQSRRSTSKQILKDHLKSPTKKPRRIIEEDFYHVEEKKSPTSKISTPISRSASYNFGRSSPGSSPGSSPSLSPYSSPPQSPPHVYNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNNNNNNNIRSILKSPQSPSISPIKTPRRSPQQQQQLQLQLQNYIPMPTKTKTPTKAPYVPNYALAPIEPKPTQKTPVHVFGGNQLSVKKRQTIEDMITEVLKMNVDTAALKLPLPKVGQHVEGKSNMEDYKDAWFKGVVKEVLPNDFFLISYIDGGEEELSYTRLKPNLTSELEPLKLEEIVVGGEYLGSYRNFYYNVYVLEILRHSIRVYFADLEMAKTIKYSQLYLLSSFVKR", "length": 998 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54HE0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 5", "gene_name": "cog5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNNNNNNEGVSSSSSSSSSPLPNISSPNLISNSNIENDIEIKKKSNNNNNNIFEGDNSHIYNQFLGEDFNVVHYTSNALKVSSISLSLNTLTSCTRELGQELTENITTNYDDLFKLANNIKELDQLTDTLKLGVSNLEESIQRMKNDISEPYNKVKSHIGQLKRVQDSCELLRKLIRYIQLVKKLKNHLQAGSRDLSKSAQCINEINLLKKDSDLTGINIIDSQVVWIKTCSDQIITISSTLLYQGMENQNQTDVANSLQVFHNMTILNEKVYSIVNLTTEKVIKNIKALLNVNKLIADLPKTTITNNINNNNSNNNITTNNNNNNYNNNNNNNNNNNIISTSTDKSIWLKFESLIDTLYSSLIQILHLQRVLLKIKDPLTHKSLMEVLLIKQHQLQQQQQQQQQQQQQQQQQQQQQQQQQQQVGTTSNNTQPILIEMISTLFWKSILKVLENNLLVAAKSSNIIENTFIREYPKVSKFFLDFIKKLQNYIDIHQMDIQQQFMIVLSNINQIIGNNNSNNSNSNSNNSIESSLSTSSSSSSSSSSSSSTTTTATTSLILLSADDYKLSLFKSIGLFEKAYLEYSQSKMSTIVNGLFPQSTWSSRSTLPVIPNGKQLVDLSKTIWSEIEWLVGNNDRQLLGKLMLVVSKVIDLFSSKIESMVQPPGLIVLNSNIGSSSSTGGVNNNSNSNNNNEIITINENSKPTPSQTVNTLLFNVSIQLNSSIQSLLTSQPLERESIIVIEKSLNSLITICTNIITPLMNSFFTHIEQIFSTIHNEDWYNEKTTKMLINKSNQTCSSYMESFKTLVNYFQNQYLMRFTPCQLLNNQIKSMISKIFIVYLKYCSLLKQPFSENGKLKMVNDLTHLEFAVTPLLVSGGIKEIGESYNLIRNYKQSIFN", "length": 898 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54IX3-1", "protein_name": "Probable polyketide synthase 26", "gene_name": "pks26", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METNNNKNIQEDIAIIGFRIPGCQDNTPSELWNNLMNKFSGVGKTTERWSDNYHLSGDINNGNSGLLPLKEWKKFDPAFFGINPTMVSTIDPQQRILLKCTWEALEDAGIDPIKLRGSNTSIFIGCSTGDYLDMVKSNNEIQTNLFGSVNHSLSNRISYCFDFHGASMTIDSACSSSLNTVLLGCQSINQGKSNLCIAGGVNFILDTTIPTAFSFLNILSKNGKCMTYDEGADGFVRGEGAGLVVLKSLKDAIKDGNNIYCIIKGGNTNVDGNGNADKANFFQPSKQSQSDNIKLALESIKKKSMLDIDIDYVETHGTGTPTGDPIEVEGISKVFKENHSPENPLLIGSLKSNIGHMEAASGVTSLIKCCLMFKNKSFAPNVNFQKINPKIKLDEWNIKVVTEAIPFKKNKITSMVVNSFGVTGSNCCLVLTESINNNNNSNVDKITKNEKEYLIPFSANSNQSLKNYIEEVSKIDESLQFEDFVYKQLSNKSTSLFQRFVVTSKDWKELKYKLSQPLPLKEISSSISVKKPNPITVFVFCGQGSQFNKMGLELYNNDKNFRNYIDRFDKKLLEYYGYSVISKLRSIDDNDLITIHDPIIAQPATAILQISLFELYKHWGINPSFIVGHSLGELPMAFCSGMIDFDTVCYLLYHRSLAQSKTNGCGKMLSCNISSEEFVKNYSPRYPFLEIACYNSPNSIVVAGKESILLELSKEFKNSGIFCAMLGSLSSFHTSSQLEVKDHIYSLKFESKEPVIPTFSTVTTHLFNSNKLYDNDYIFQNIMKPVLFNETISNLYKHVENNQLGSEMIFIELAPHQTLSFYLKQLIPKDSNYFSNSNSITILSPLHKKKNDYLEIQQTISTCYCKGYDVNFKSQILIESKTNISNKSLPLYQWDDKEFWKDLEKQKRILQGPPMDTLGFSNEKSPILKSFETKIDIKKKPFQYLKGHIVKGKIYFPGVGYIENLLKMYPSQDIDIDSMEFEAPLILIEGIVTCLQSNVYKIGKNEFKVQFHFQDQKTKQWIQSSFANYHLSHRDDFDPTTNKLNIQNLISNNCNLTKLSKNQFYNFIKAKAGLSYNGEFQGVEKCYLGDNCSLVEIPFDTSNQDVETNINMIPILDSCLHGVHILYVEQCQMVLEKIEGLKYYSSTLILSKQKEQQKLYVFTRIENKDLINNSISASIIVMISDGTVFFEIESVSLKSLIPLKDPISIENPTDELFSSYLQSIDSLISEPSSYKSIYKRNEFISSGMSDLSRSDYQQFISTLLYTNLIKRNQSIESDLRNQIEFEEIKAKYCKNSKFERLFTFVIETIKQYDGINGNLNSWNEGNIDIYKILIKSTRIISKLLFPLQGEDTTIDTPQSLFENNLLDDFYNINGNTVIQNQLVGEIITQSIKPLINEKMVFRILEFGGGVGSLSIVTLNKINQLLEQHPNFQIDIEYTWTDISPSFIPDAKKLLSNIKGVTIIYRSLDLEESLIEKQLLKPSYYDFVIMSNVLHVIKEIKFGIDEIYKVLSPNGQLLFIETPYRMLICDSIFGVFDQWWGFTDTGIRVDRCCMKQKTWFKLLSESNYQDIIMSDDIKDCCFVIQAKKPSISSLEYKLKIDSQENDKIIVFGENDTFMKYLENKSTKQIIKIKTCQQFSDLITSNSKEINNQSIIYFIKTLNQLLIENFKEITLEYIQINQLLLSSGLSCKHILLLNQSTSENYLGSSISGAARYFDEFPPLKLYSFDFDKYSLNNESINIIDDIIEPIIKSMNNSNIRKELLVRNNKIFFERYKQEKRIKENYKSTSFENDKSLFVHLNANLEYELKSKQVKLKQNEIEVNVKATGINYKDYLVYTAMTPSELINHKGESNPEFGHDFSGIITRIGDDDGDNDNEFKVGDQVYGIWFNTTASHIIVDKEFLCHKPSKLSHTIASSIPVVYITSLYSLYNIGNIQNDESILIHSASGGIGLSALNILKWKNHKSHIFVTVGSKEKEKYIHDTYGDFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIIDLSITHLNHNEYTCNNNFKYNYGYHNVEVLFVKGDIISKLLKNITSAIENGSLSTGIPIIEFNDSDCFNAIEFINKRQHIGKIVVNHNKENLIQELIKKTNLPIIKSNYQINSDHLGKNILVTGQSGIILEILKWIVKYSTNVENIIILSRSSLKWELELLVNKNKNKLNFIYKSVDVGNSLEIEKVIDEILMENPQINNVDSIFHYAFTQISCKEHEIDQVHLNVSHQAKTMGAINLHNQSIKRNWKLINFIMASSAAGLIGSTDQCSYVCSSNVLDTFSKYRKHVLGLPSICINYGLIESTGFVSRNQSVAVMLDGQGIRPMQTNQILGSLDLFIQNPSKSTNIILTSFNFNEFATGNLQQSNVHKFDFQFNCCLSQKSKLMANNQASENPVKDLLINNICELLSIDESKLNIDIRLIDYGSDSLTIVQIKNLIDKNLLIPNLISIQMLQNNSISDNIKILTDSYNKKKQNEQNELKNIKVGSFTKK", "length": 2531 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K45-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKILYLIIYLTLTIVKGAPLYNCKKLNCSSMNTNCKVFGCSPMFGCFETSKCPQSNVDICHTNHCDENTGSCYQIADTCNDGNNNTIDSCGPYGCVNTPVNPPEPTQSCEQKCNDNNPCTVDFCDFRGDCYHYETRCSDYDACTLDTCGEKGCEYRPMNCDDNNPCTADFCSMLYGCYHEPIECSVKVPCRTDSQCNRNNFCETYSCDLSSNICDYYTRDCGGNPCINNECRTGTITN", "length": 239 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K50-1", "protein_name": "Phospholipase D Y", "gene_name": "pldY", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIINRLFIIIVLFFVNVNSKIISESTLNSCQGGTIQIAESIPLGLDISTNLSTHDAWMDLITNAQESIDLGFFYFTLLGGSDLDPVYGGQLGIDIFNAIVEAHSRGINVRIVQNEPSESFPDTETQTLAKLGIQVRSIDWVSLVGSGVLHTKLIIIDESSAYVGSANADWSSLAQVKELGIVLKNCPTMVADTEIAFQQYWNAADFTSLPINDWGSNYQALFNNTNMASLSLNNNNNNNNKNKNNDNDGSGTNQMYEMFLAVSPPQFQSTYRTGDIDALMDAINNADQSICITVMDYTPTTLYNDPNTYWPLIDNALRAAAFNRNVQVRMLISHWNYTSPIIPQWLHSLNQVDNIQVRWFVVPDFSTNPQIPYTRVNHAKFMVTEKQSYVGTSNWSQDYFTVTGGLSYNVFNNDFTNQLQSIFNRDWNSPYTQPIQNF", "length": 438 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K65-1", "protein_name": "Band 7 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIKKLSTTAIKFTKQTQRFNKRGFFKILNQYERGVVFNFGKFHTVKEAGFHIVIPFIQKCDIVDIRTFTYTLDKQKIISKDNINLTVDALVVFRIHDPKLAVTKANDCILLVNEMAQIKVCEILSHNTLDQVLHNRDKISNQIHDELKEALNKYGVTIEYLKLKDIHFDETIAKAIAKKVEAANLRDIKN", "length": 192 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KF5-1", "protein_name": "Protein LEG1 homolog", "gene_name": "leg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSNKTIFLILLFLINFNSIYSFNFKKEIKISNDKINLPTYNPWIFQDRFNLYSILINSTNIPVFGEDNSNNCLHGLQLQFEWQNRSGRLEINQGHVNTKSWWGDMNYYLSIIPYLSAMKMGLVPVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIGSIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNSNDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFMYLLKKMTKNEICRNLINNEINIFLNSPVPTIIEILFDILTNNC", "length": 326 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KK9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTEVPNQKHNDGGVGVTVGNFVKDNETNVNNNNNINGKGENDNNNNNNNNTIIDEPKLLNNNNNNILVIPLTTNIIDNELNQQKQHTLPLPLPPPPLPTQPQQITPPLPTQTQLPNNMLPSPRPIQQPKIRQQTQQQQAQMQQLQLQIQQEIQLQLQQQQQQQLQLQQKQNESEINGLFSPNFSSSSSSSLSTTPNMHSPLFNNNNNNNTTTTTTTTTTTTNSSTNNTNSSTQTKNASTNKISQDVIGVFDDTDTESEGEEYHSGRSIDFWNKDYKDIAWRCNWIDLQIRDLQYQSMVCDQLYHKVRRSKQKIIPDNKSLSSSIDNNNNNNLKSIPIETIDHSNNAITSSNIPYSNNEEEQQEQQQHPSQSIRTTSVVKLRKPRKLIRRPTVKLSAKQMTTDLEAHPLFTFHKGYFKFENAIKTNIINEMEIKYQEKEKPPKLLTLSEERLKQYINSNEDVDVVNLFATNESKRLSEKRRGRIPSDKKEKVSSHRLKSGDEIDGTSSSTATATTATTTTTTTTTTTTTNKKSRRSRREKKKEKEREKQEKEKHIKTKDEQKDREKKEKAREKELEKERKREKERIKEKERQEKERLKKEKELEKNKKKEKKLLKEKEKEIKEKKVKLKNQENIIEKDLTINNTTTKTTKSKKSSSKVKKSEQEGVKLENVEIEDEEVEEEEEEEEEVEDEEEEEEEEEEEEEEEEEEIEEVEDNEEEKRKEERRRRRRKRRILRRRKKLRRKQRKRQLFLQKQQQQQLLQQQQQQQQQKLLQQLKKRDESNGLSYKEIITPEWRDISSFANNDPSLPSPLLLSNPLLAQDIKNITTTTTTITTSEPISKFSTITEEELLIRQTTNGIDGTPMNGIGEDSESSGSEIELDEDAMKIIHARNEIEEKRRFFNTIKQIQMENPVPSYKRKKESLPVEFVAPTVEELLPSYHFNKKSIKLLGKSWNGDFEYYSSSDEDDYDDSDDYDSDDDNDDEDDDDSDSDDEDESDSDDYDSEYDSDLSDSDDSESESSDNELDGLYSSESEINHNSSGDEDEMDVELNNHHIPSKNSKNSKKQPVNNNVNNSNNLNGSSGGGKINSKPSKQQPRNSKANPPSKQQPTPLKQQPTPLKQQPTPLKQTTTPSKATPSPKQQSQQQQQQQQQQQQQPQQPQQPQQQQQQSPKPTPPLVSTTPPLSSVPLSPPTKTIRSTRGVSSLSNSTSSLPKQTNTPPISILSRKRNQSQSSVTDAPLSPTTTATTTTSPKPTTRRKGKLQETIPVEETKIIEETKPFEETVPIKENSTTTPLKRTRRQTKQQLVNGETTTPLTNGDNHVEKTDSNSTDVKVDPTSWWGDKQYKIQPVMEATVIRFKRVKNDDGDDDDQIQNNQKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNINNTEDLESKIKETKSINIPMEISTNGNDFQMKEKEGE", "length": 1472 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU3-1", "protein_name": "Probable polyketide synthase 25", "gene_name": "pks25", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNSYLNNPQFDINNGNKEVTDDDNNKNNQDNLVAIVGVGFRLPSGENERNNTPQALWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGITPNEAQTIDPHQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGSSTNDYLTLNRNEVKSNVFGSMAHSIANRVSYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDPYPYKAFSILNMLSKSNGRCKSFDASADGFVRGECIGVVILKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPNGDPVETEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNENKNTSMIINNFGVTGSNCCLVLSQFNNTNKQKQQMKTKINNYLIPFSANSVESLKKYQSLIINSKENELKYSFEEFVKNQVFIKPTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKRSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGLGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGAGYIDNLLKLYPNQDLTINSIEFKTPLILSDDNGQFLQTNVYQTGKSDYRAQFHFKDNRTNVWVQTCTANFQLYNNGKVDKLNLEEIKSTKCNLSSIPWDKFYPHIKNRTGLNYKDKFQNTIECYLGDNCSLTEISLELPENFHDQESFFNTPILDICFHGSIVLIKDNCKLVLDKIDGFKLYTSNIPKNRFDHLSIFVYTTMKSTKSNSYNSTYTVMLEDGTVILEVENLICTSLTPVKDPLLIEIPTDMYYTPYLQSKDSQIQSPLEFKSIYQNNQDNDSLLIPNVVLETIKPLINEQMEFRILEFGGNNLSNSTLLLNSINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIKYSLNQIYQILTPNGNLIINEQQPNNENNENNEDSLKNLLVNCNFNSDIMMKSSSVSDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCNQDEQFQQQQQLINKFESHYNNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSITFEYVQINQKLYEFKSKCTHVLITYDSQSSNYLSSSILGAARYFDEIPTLQLFTFDFDKDSLINLDISVIDHLIDPKQNTLIEFFIKKNGKVYFERFKKGLKKNSFKSESYHQITNEQEILISKLDENLDYQLKSKDSILKPYDIEVEIKATGLNYKDYLVYSGLIKLKGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGIGQSTSSSHIIIDSMHACHKPSKITHVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEILKSNNHSSPIFVTVGSEEKKQYLINTYGNLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDSNFKCLNPEGRIVDLTITHLNPNEFIDNNKFKYNFGYHNIELYYCEKPTIKKLLQSISKSIENNTLNYLIPITEFSNSNIKKAIEYINERKHVGKIVISHDTDITNKLIENQPKIDYSLLKSNYKIKNLGKNVLVTGQTGLILDIINWIMKYNSTVENIIILSKSSMKWEMEFLINNNKTKIKFYYKRCDIGGDSDSINKTFDKLFTENPTITNIDSIFHFAVVQITRKVKDIDMKSLNISHDAKTIGAINLHNQSIKRDWKLSNFILASSILSKVGSLDQCGYVSACCVLDSFSKYRLSIGLPALSINIGAMGGSGMVARSELVETVLNGQGYNLTSTNQLLGTIDLLIQNPGQESNNLMVGNFNFPVFNNFKQKIHQKFDFIFNALDSNSENGDGSNIKNSTNIKDKFLNKVSEFLSIDSSKINNDIKLMNYGADSLITVQLKNWVDKEWSPNLITIHQIQSNSIGMVCQIINDNFEKKK", "length": 2380 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU5-1", "protein_name": "Probable polyketide synthase 24", "gene_name": "pks24", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQNKINKAEILQVDDKHVEENLVAIVGVGFRLPSGSIENERNNTPQTLWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGINPNEAPTIDPIQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGCTESDYHNINKNEVKSNVFSSLNHAISNRISYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDSYFFKAYSSLNILSKSNGRCKSFDASADGYVRSECIGVVVLKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPTGDPIEVEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNKFKNTSMVVNNFGATGSNCCLVLSQFNYNTINNNINNHNNNHNHNHNHNNIKINNYLIPFSANSVESLKKYQSLIIENKEYESQYSFEEFVKNQIYNKSTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKCSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGSGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGTGYIDNIFKLYPNQDLTINSIEFKVPFVLTDGIGQCLQTNVYQTGKSEYRAQFHLKDEMNNQWINTSNSNFHLNSNDNYHEEKQKLDIQDIKQTKCNLSSIPWDEFYSLMKTQLGANFYGIFSKVVECYIGDNCSLTEISLELPENFHDEQSFFNCPLIDACFHGTVILYIQKNCKIVTDKVEGLRYYASNIPKNRDEHSSIFIYSTLKSSPSDDLLSSSIVVMLEDGTVIIEVDNLVVKSLTPVKDPLLIETPSDFIYTPYLQSKDSQIQSPLEFKSIYQNNQVDDGLLIPNVVIETIKPLINRKMEFRILEFGGNNLSKSTLLLNEINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIEYSLNQIYQILTPNGYLIINEQQQQQQQQQQQQQQQQQQQQQLLNNENNKESLKNLLVNCNFNSDIMIKSSSISDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCYQDEQLQQQQLINKFENHYNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSVTFEYVQINQKLYELKSKCTHVLITCDSQSSNYLSSSVLGAARYFDEIPTLQLFTLDFDKDSLTNDLDLFKTIDYLINPKNNIQREFYIKNSGTVYFEMYKKELKNLKNSYKSESYHDLSKQQDQLVSKLDEHFEYQLNSKQIDLEPYEIEVKVKATGINYKDYLKYNEMIKVNEAGIGFDFSGVVSRVGIKSSKEFKVGDQVYGIAYETSSSHIIIDSLLACHKPSKITHVQAASIPAVYSTSLYCLYDVGNLRDEESVLIHSGSGGVGLSGLEILKSNNHSSPIFVTVGSEEKKQYLINTYGDLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDTNFKCLNPKGRIVDLTTTHLNPNEFIDNSRYRYNIGYNSIEILKVGKSTIKKLLQSISKSIENETLNALIPITEFSNSNIKKSIESIKERKHVGKIVISHDTDIIDKLIEKESMIDYSILKSDYKIKNLGKNVLVTGQTGLILEVLKWITKYNSTVENIIILSKSSLKWELEFLMNYNNNNNNNNNNNKIKYHFKKCDISNWNLINKTIDQVLKDNPTITNIDSIFHFAALQINKKLKDIDMNSLNVSHSAKTFGAVNLHNLSIKRDWKIINFILASSVVSVLGSFDQCSYVSACCVVDSLSQYRKSIGLPSFTINIGGVSDRGYLSRHKLVEAVLGGQGVELISPNQLLGTLDLQIQNPNMPTNAFVNNFNWPLFKSFKQKLHQKFDFILNPINVDNSISMENDTNQSSSSTNVKNKFLNKVSELLSIDPSKINTNIKMINYGADSLITVQLKNWVDKEWSPHLITIQQIQSNSIGMVYQIINDSLDKKKKEMDEKLLPITAKTTTTTKNDPNDKTEYKYIAGGDCCREFSIKFHYSSVVNFII", "length": 2471 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LI2-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "mcm2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQNNNNNNNNNNNNNNNNNNKRKTKTPSSVNHNNTKINEDKDLYNFIDKIRDKTDKSHLEDEYDEDDNTKDGKFNKVEDEIKNDIDSEEDDDDIIEDNEHLYDGDEDSENLSSEGEGDDLLDEDLQDQDEEEVLGDEDNHYEMEGLDNETYEDIDKDKKTEVDSILTKRDREEQKTRQATNRHQYRISSFLLDENDENMVDEDTENNKLLEKRKANLIKKRRETIRQQNDNIKKDYDGSVPSFKDGFVNSERYFEDGDGDDDDDDDDFDIGDNGQVVNLEEPDKDKCLREYVCMSGPRNEISKQFAKFLLEFKEKDGFNPIYQESIQKMCAANKESLMINFTHLCASTVFGVWVAEIPTEMIEIFDEVALKVVLRIYPNYRNIVKSIHVRITHLPICESLRDIRQSNLNKLTKVGGVITRRSNVYPQLKHVKYDCVKCKTTLGPFSLDGTFNDSKPPIGLCPQCQSKGPFVMNSEQTVYRDFQKVTLQESPGTVPPGRLPRTKDIILMDDLIDTVRPGEEVEITGIYKHNFDLKLNYSQGFPVFSTIIEANHINKKEDLLSSFILTDEDEREIRKLSKDSNIAQKIIQSIAPSIYGHEDIKTGLALALFGGTPKDVNNKHRIRGDINVLLIGDPGVAKSQFLKYVEKTAHRAVYTTGQGASAVGLTAAVRMDPLTREWTLEGGALVLADRGVCMIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLTARCSVIAAANPKRGKYDSGLNLLQNVELTEPILSRFDIICVVKDTIDSFKDRELARFVVASHINSHPDNQNNPENDYLNRATKQSPISQELLRKYIIYAKRIKPRITDIDKNKISQLYTDLRRESRAGGFAMTVRHVESIVRMAEAHAKMHLRDYVTDFDVNTSIRVMLDSFINAQKNSMYKNLRTKFAPYVIFQKDINQLLTQLLQTLARDFSNYHFARSGDIPDQINIPYDDFDTKARELGISDITSFFRSNEFTSNNQFTLKKDKSTIIYYRNK", "length": 1008 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LX5-1", "protein_name": "U1-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKITESNNNNNNNKKDNNKHWCKYCKIFIQDNISVKNHEEGWRHKNNVTRFVSTQNRDKKYQERDQKEAEREINRIKNTGARSFREKDLSRVLDEKKHQQQPQQQPQQPQQQQRIFNNNSNNNNNNNNNNNNNNNNNNNNNNNSNNNNNYHQPQYPTTTTTTTTTNTTASNKNCDNADSKFKEIQEQQRQLLSNNDYYNYYQDRQQLIYDYYQNEGNQPIPEPPLNTSLYGYTESPLLKSRLDSSTDTLSSSSSSTIISPSHQKKRKQDDTNSPIPAKISKDECVNNENKDKSNEKENELNNNNNNNKSGEGEEGEESDDNDDDEEESGSGSESESESSEVDQSESIIGQWQTVDPIESAFGSTRKDSDDEKDKKDKKNKKDNDENKRDEKDYSDVSDADSEEESVNITKRAMANHKKPITLTNVISPTIPSTSKNFESVLSFNKSGVFSLNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEPPQPTPQITLKFNKPLKQRNTRKTNIEDKQS", "length": 514 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54M95-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLISILFFLFGILFFLKNVESASDVVCSFGYQACGNNCYSPSSGQKCYPGGVVCSFGYEACGNNCYSPSSGQKCNPGGVICSFGYQACGNSCYSPSSGQKCYPGGIICSFGYEACGRSCYSPSSGQKCYPGGVICSFGYQACGNTCYNPSAGQRCFN", "length": 158 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54N59-1", "protein_name": "G domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDLDYAIIVLRHHLESNGRFFEISKDDVKNRVTIKNKLTQEERYIDFGEIQNFIQYDEFEYNLLANGFQENLSILKNSILPLTKAPDSCSSNRGKTIGNSSLLINKVNGLIDDDKDTIYLLLIGITGVGKSTFVNMVVNYIEYSNLKDALENATLEQIYTIASKIEIQDENKTHKFSLGDVEDYKIGSSVTQYSRQYRIKLPDGKTLCLIDAPGVGDPQGTLQDNKHFENILHEISSLKKLNAICILMRPDETRATVLFKYCLNQLLLHLHSSAKDNIFFCFTHTRGTMYKPGPTRAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEFDFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIKLMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPKWYSSLYWCDNINKMGTCKKCSNTGVLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQFQEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSEYKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVEIDLFSKMKNKTKQIIK", "length": 689 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ND5-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "mipp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MMVKIKNIIILFCIFGLLSNVSSLSSSSSSSQSSDNNGNLSPIQDYDLEFLSKHLTTKTPYWILTKNGDSNSQGDGSSGNSNSNSNSNSNSNSNSDSSNEPPEQCKLISIDFIARHGSRMPVLNSIEKLKEMTTSILEYKEQVNQGFNWIFNYSVPYPSDIAGNLILQGQYEHYNISKRLLKKYPLFFEPMKYKPQSYSITSTAISRTGISASAFSYGLLQGTGSLGVDGFQPVFIETASLDQDILLRFFATCNQYVDQLKNGTLINKDEQTKWNQMVFPNISNEISERLGLSDIWLPTSNVISDIFEACAYEISINNISDHWCSLLSKQNILDWEYSQDLSNYWLKSYGHEINYQIATPLLNDILSGFDIYINNNNNGSSSSSSSSSSNNGDNSGSNGSSGSGSSTSTSSNDNGSTNNNDNKVEPTSILRFGHAETIIPFISLLGLYKDEQKLFANSSTEQIENRKFRTSVVSPYASNIAMFLFDCGSAADGFKILVQHNELPVLVPGCDEIYCDYQQFKSIFKQGIDNFKWNSYCNINDDDSGSSGGDSGNGNGNDSHSKKSSYFLAIFIPITFLVGGTIGGIFTYFSYEKIMQVKNRKKLTQYGNDEFISSPKSKSFSFKPTKFDSRSPLIQ", "length": 635 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54NT2-1", "protein_name": "SH3 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKITTQFARTRQMLFTKTGHSEETIDVQYHYEKERTFSTEERLVKIQKNSKKLIELYKDLNKITTDIAQDACDLYDTQDPMWTPGSKLRDVATNNDKHLLDYTEQMAEPYTKPLSDYISQYKEARKRTEELTTRKVDMDRYKNEVGKLREKGAGSSSKAKLAPTEEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSPLPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVDKDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSELSFRAGDIITIHKSEGEWWEGELNGIYGFAPGSYLRMN", "length": 374 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54PW0-1", "protein_name": "Annexin I", "gene_name": "nxnB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEYKEKEINTSSPSSPSKTQISNIENDSISEKAQEPISEKVQDPISEKAQESISEKEHIESNNVSEIIDLIKSGDQHLNNNNNNNNNNNNNNNNNNNEEENQEINYNDNQLSNEEIVEDVKNSNINNNNTIEKGNSSQNNNKNNNNNYHTEKCDYCLICKCYDYGEITHNIVEDSEILKQSIRYSYVDDTSINSILAHRNYAEKEAIMKKFNDKYNKSLETELASHTHQKYRRTLISILTEPSIYDTLNIENSIKTKNSNTLLEILLTRTNEQKELIKRIYLVKYGKNIEHDIIAKFSNGANVNGNMMKQLLISMLNNDRDSNSNQSLDMNLINTDSNRLYQAGEHKKGTDHEVFIEILSKRSFSHLSELDRVYENSNPKGHSLRKAIELEFGVSKSIKQVKISLLDILLFSKEPSKYWAEQFNRALTSGSWGINEIDLTRLTITQQHQASKIKQAYISHYDNSLINEVSSKTSFRYKKIILSMLTV", "length": 487 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QB4-1", "protein_name": "Kinetochore protein Ndc80", "gene_name": "ndc80", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MHNNNLTYQQYQQQQLLIQQQQQQLLYQQQLLQQQQQQQQQQQQQKQYSHGRPSTLGLPSRKPPPMQPQPQPQIQAPIQLTFQQQQQLLQQQQYQFNNNLNTINNNNNNNITNRHSMVTPSTNLGGRSSLGPPSAMLTNNNNNNSNIRNTTFISNSGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNNNNNIHTQVQPKKSIAPSKSNTISSNTTTTTTAASSSSSSNPSITLRQETRPVNDSKFQSQCLLRLQQFLSQSEKGYPRAITKDNLMSEINGLMKFLCLHIDPHFKLPTEKPEEEIISFFKMMGYRSAGFTKRVFSQVGNAHTRGHLLGAIIWMVELIEYDQIIRQMDSHIEREILNGNTIDENGNLTTTTSATNTNEDGNFNLTTQIFSKHVFKSYEAFLKGDDGNHVDQFLEEKFNEVNELIVKECEESMERQKKIKQEIVNLTQYITNDDIDQLNFKLEQTNQEIIATHDLINDNELEDQKLDQEIDQNQTHFQELEIQQKEHQKKKQEFESRIQIQQSNSVDAKRINQETFELKEELDKVQREQSRHDQLKQEKSKEIKQSINEIEKLIQSYKEICCKASLVTNDNLIIEKYRIIFTHTLNNNNNNNNTNNSSILNISNNIINNNNNNNNNNNNNYEEGIISISDLKLVIKNLQELNLEISQNISKIKQDLLKTSNLNDIQKESISDKELELARIKQKHDKQKNILKQEKQDQTFDITQREENIEQLKSSNKKLIDDGVRELEKTIQLLESQREEHSRLKIDLKQSSEQMKLQYLKRIERFISHRQLIGSQIFDTLRQMEELSLTQKILFPPPPPPPQLSQQHQQLMQQQHQNNTIDIDE", "length": 855 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QD2-1", "protein_name": "Probable cytochrome P450 517A1", "gene_name": "cyp517A1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIINVFLFLIILFLVKDFVKKNKKIHTKSPSGPIAFPILGNVVQIRFWELFKIQEHELFGGYSKKYNGVVRAWFGERLFFFVSNYDVVKYFQKDENFHNRPSVLVPGWRYASSNGLGVMSSSDDKWKRAKSSVSQSLRVRTTKKLMEEKAIEFIDSLEKISNNNEIFYPKGHIQGYACSMLFKYMFNQDLSVESGMSRTIGNAVEHVFGNLSKLTAFDCFEIFSPLYDWFFTRRLKGCDIVRQIISSQNENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVILQLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKNDQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACPGRFVAIDKMFLGISNLLLKYKLKTQNGEKIDDSIQFSVSLKAKDYGIKLEKRI", "length": 483 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RM4-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKVILIYFIVIYLINISFSLKPYQQQQQLHNFNIIENNNNNNRNEKVIIAHPKIPPYWLIENEISNPNDLISFKILLKQNNLNKLNYLFEEISDPKSKIYGEFLSINEINELVKSSESDFNVVLEYLKSFNIGNIENGSEIKVFSDYILVETTIEKVSSMFNSKFSNYKNKNNGNTRNRLNGPAYLPKQLLNSIDFVTGLSEFFENNFKIENYLNNNNKNNGDSDSDSGSGSGSGSSNSYNGGLDDILITPKVLKSYYNVPNELIGKFENNSIGVIAFNDYFSMGALELFDEKFNITTTKDNLKIIGNDCLGKGCDQYESDLDIQYIRSMGENISTDFISFNDAQWILDYLHSVLLMEKPPLVQSISYGWAELLQCDVSNGCSTFGYDSKQYVDRTNSEFQKLALLGISVLVSSGDDGAPSMGGSSGNCPIDGTVYCPTGGCNHTKTMCPEFTIYNLNGGSDSGGSSDSYCFFPMGIASSGCTNILGDPSVLDSGMKIFSEKNKQCNLAIEYDRTNLPHVYSECECKDLVNVTFRNYHFTQYQFNENNGALFVAEYPSSSPFVTSVGATQFLSRDEKITTEVGCTILQGAKITTGGGFSSFQSQPKYQQYAISQFFNTSFNSLPPSFSYCPTNRGVPDISMVGHNYKIYSSDGNNKDFNQCPCKSLPVDGTSCSSPTLAGLIGLINDQLLLNGKTQLGFLNPLLYQMAIDEPRIFNDITGDSSNRCSRSYCCLYGWSTSSNTWDPVTGLGSIDFNLFLSYVLKLKGI", "length": 767 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RX1-1", "protein_name": "Translationally-controlled tumor protein homolog 2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLYKDLIGNSHDDLLTDRYEIKVGDVTFEVKTKMITKDLNVVVNNNSLGGSISTTVDNNNSITLSTNLEDEFENVEAAGTFQINNLVEQLRLVETSFDKKSYLAYMKLYIKDLINHIKQQPSNSDNEKIEHIQKGIQSFVKTMMDGENFKKYSFFTGSSMDANGLVALMYYKDDDPTTPTFVFIKYGLLQVDV", "length": 194 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S19-1", "protein_name": "PHD zinc finger-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNCIVCSKVGQYPLNLVKCYECKSYYHKFCLQSTKIPRGEWYCSSCEIERKNKKNKKRKLDGAGKKNKKNNKDDDDDNDDDDDEGENDEDDEDHQDEDSGEEEDEEEDEEEEDDDDEEEEEGNEKNKIKKRKRIPINQSPSIKKRTKDIDSEEEEEEEEEEEENDSEEERRIQKRKNKIKQQQQLKMKEKKQREKLRKRRRRTRSSRKDDNDQDDDDDDDDNNSNNSDDNDQDENKNKQKRKRRKDKKKDDDDDDDQEEEEEEEEEIVTGKRKRRSLNKVQPNQHLNNENEEDNEEEEEEEEEEEEEEETDSSEEFLENLVCSSCNTGKDEDKILLCDTDNCSRGYHMYCLRYPITSVPKGDWICDFCRFGDISADLHSADDDEDGAINSQKEIEKQKQKQKEKEKEREREREREKEKEKERERERERREKEKKDALRSSFSNIPIPKINNINGSNGSNSNNNNNSNNNGSGVNRQSPPKVISKKSPQQSPKPLKSPTSSSSSTTSSPPPLHQQSKVTSKISPNSQQSIPTINSNINKSPPSQSKNSPPLKPLTPDLKKQIPITNITTSSTTTTATTTTTTTTTANTSNVATTTTLLKPSSQKKPTILSDKKQLNTSGTNLPMNGKKKEDLESSASHSILDMIPPNNKLFNNSIQSAPISWDLSGSQHKLSTSSSSLPNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIKLQQQLQQQQQQLHQQLQQQQLQQQQQQLHQQLQQQKLKQKQIEEEQEKEREQKRLENEQKLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEFIDQKELEDKLLSQFDNQNLKSPLSLTSTTSSTLSHLPQSTFESSTILSNKTIKQKWKSRILFETDQICQCEIIQIYGMDFKVNPFQNNITSKTLELSFNQVSFDNLPKPIRDEFITKSSTPSTCLDIGAIDLPNSALLIFLPEIPNQSSLYHLIIHFIENRVAGFIDLSNDLSLYIYPYQTSIISLDLIGILIDKKSLSPPSLILNQQQKQQKQQQQEQEQQNQSFDIKNICYIGINHISMNKILTSQGKNYFSFSNFNELTLSSDIKNFDLVVVDNKMVNNQTINKEINNLMQLQPTTNNNNNNNDINNNHDTLLLVIKDVEFSKWLVSQKKFPNSLEIQKIFQQQILFKQSRCIFLLDNSIIIENESSYFVEFISSFGKFKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNDWTIKISSTIFDELLPFGHQSNVKKKIDEIKRGINQQLIVSYDFSPMVPKQSSDFLLLALRIAHSKKYKQVFLITSNKIIQNQSKRYSNLNLNCLSLEGGIDYIKNINNKFSLKI", "length": 1361 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S56-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDLFSHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVGECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54SW0-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "NQAKSSTIQQPTQTQQSNINNNTAKPRAAPPLKLVITNSNPSLKQKPQSQQTIPQQSVPQQSIPQQTIQQSVPQQQPNQSQQVNVNRTINPQQQQQQQQQQQQQQQQQNINRTAPLPQQSNYKPQPGVIYQQQQQTQYRVGTPLTINRSPMVGMVSKQPMSSSQQQSQSQQNIQRVPCQGKCCAGLAVKPLVPINSITAKPPPYSTMGPRGPISGGFVRTSPTGAIIGPSPQQQTMSRAMVNSMPIQPQIQIKPKPSPLNNGGIPITTTTTTTTNPLNKSSPSTLTQSSNTLASSNNNITTSNSLSSSTSSLPTTSTTPTTKPKSKPRSKSNSNSQTSSSTTSSSSTPSTPTTNSTKNKENTTPNKGDDSGTDNEKSSLSNSSKLLPTAYTMDQVLPFNPNQMFLGPEDKYIKSATRTYHKIPTNPSVMSNNRGAEIPSSLEYILDIPIIHDEPSSKNNPTWGRLILDALRRLVANKKTTRITERLKLDNMYKDMDSRSNQDKLDWKNGLVNEAQLNYLLSFLSNTIPFPDTPEKNKNKYLSSSDSQIINSNDQSNSLNSNNSSNNSTTNNNNSSTTTNSTNNIINNNNNNNTSSVPNSTNNSNNSSPEQQDVIDMELKLEPDNSMNFPIEINMDSLGSYIDDSFTFDNSSYDDTATISSDDKNLPITTVMPPTTSTTSTPQTITNTIPTTTPTIISPPTITTTTTTTKTTSPPTITTTTSPPTITTTTSPPTITTTTTTINSITPTTSTSSTINSNTTPMLDIVIDPVISLELLDENHQQQQNKEVKEENVHSKQQPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQEDFMIQVQTSDLETQTQIQQDKEEIQVKPIVDSKKSGNSPTQIQQQQQHQQQQHHHQHNTLTQGFEFGMMMDIMNSPSSTSSMKRKRDDVDQPINQINNSSMVVQQNNDFFSDFNTIEAPFSSSHHSSQLSFQTPFSPDIVIDSDFQNKKRIVS", "length": 981 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54T36-1", "protein_name": "Probable polyketide synthase 19", "gene_name": "pks19", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFGNKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSITMGFQSIQNGTSNLSIVGGASLLLDPYVSKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSTTSTPSKPLLIGSLKSNIGHCEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNINEKPVSMVINNFGVTGSNCCLILSQFIEHSISLNGNNPSYPIESQQQIFLIPFSANSVKSLKNYEDLIINDNNLSTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTSNDKSSNITIKRNQPLIVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLDLKENNIFCAFLGSLSSFHTSSQNSTKNEILPLEIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDINFKCQFNHNDDDVNSIRNNSTIILPNYQFDEQYYWKVDINFEQYRLNGPNVFNNLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNKDIVINNLEFLAPFVLKENVKHILQTNVYQLGNTDYRVTFNIKDNKANQWVQTCTGNFQLISLKDNNNNNNNNHSSKYNINQLLSECNFTTLSKQEVYKYSKLRSGITHLGTFQGIEEFHFGNDLTIARIQINYENFDINGKPVYQTFDKSFFNIALLDNCIQAITGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLEADSYKSSVLVLLEDGTKLLEIEHISFRSTLPLIDELLLNNPTNELFTNNLQCKDSLVNILSIDNNETSSSSGSSNTVTEIIKQTIKPIINEKIVFRILQSFSDSELSKQIIEALNQIFDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDETIIKPIFNILSSNGLLLLIIEDDIGIRFNINNLIGVGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKHSKYTNEFKKLISNNHTNRKQTTISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGASRYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNEIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISDENKNCEFKVGDNVFGVSHDATASHVITDVLYVSHKPNNISHIEAASLPIIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIEFMHINKRVVSRLLKSISNALNENKVKLIPITTFQIENVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLENPNIDNIDSIFHYAFTQVTKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCTYVSANLVLDSLSRYRKSIGLPSTCTNWGTIKSSGFVSRNDSVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKYSNLIVSKFNYDSIKKFASETSTFQRLDFILNSIKEKDNDNNGGENISISESIQMKFLNKISELLSIEQSKINTDIRLGEYGADSLTSVQLKNFIDKENKSNVITLQQLQNNTIGVNIQIILEQIKKLDSNETKGKSKKIIKKDSAPSLEYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKVKVIVGNLASPLLGLSKLDFGFVSNQINLIINSGADINLASNYEESKVVNIGGLIELIKLSTTGDYQKPIVGFSSISVFFESPNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSIKSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKKTKELLQSMNSYEGGMVNEKIIQNHINYIFKN", "length": 2778 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TD0-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "V4-7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYELVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLIDNGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAKVDLVLGLSDFIEDNKMSESMRATKKQVQGSTVSITPAVIKQYYGIPTGQIGVESENFQSIAAFSDFYSSGALQFFDQKFGIDSSTVRVKNVGQNCIAQNCDQMESDLDVQYMTAIGNNITTLFLSSGNGEWIIDWATAIQQYNPIPKIASISYGWAEVEQCEITNSCSTLGIDSVVYVARSNVELQKVGLRGVSVFVSSGDDGAPSFGAASGNCPIDGTKQYCPLGGCNHKSSQCPMITIMESNGTQCFFPMGSESNTCQSMLQNQNIVNGINEFVSSNSKCQVALEQDTQQNYHIYSSCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKPEIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLVGHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN", "length": 702 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TX3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYFKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAIPKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHRWSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAILKNTNQDLHKYKFNKAWQTPAAPNPLPI", "length": 1097 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54U20-1", "protein_name": "Peptidase S54 rhomboid domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIYGDTREFRNIHFHLNNIRIVGAIFGQDGFIHKKIPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIVYNMITFLDLAKLERLTFGTLKYFYLLFLFGIITNLICLFIYFIGRNNVCHLGFSGVLFALIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHFSGIVVGILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPIIKFGGSRRSYNTDRKSLDGLFFELKNLFNPQQQQQRQQQRQQQQPQSPQPQQPQQPQQQPQQQPQQQPQQHQRDNFRNDNNDNSNNYDEYDFSK", "length": 343 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VC1-1", "protein_name": "ABC transporter C family member 15", "gene_name": "abcC15", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKKIKNIINKIINFFSTIYILCKIYLYYNIKNRYEAYNILSVYGDDDFFNKPCPEDSSNWKDKLTFKWVERIIFVGFFRAPLNLNDISDLPSSLKVENTAPLLKDIIFNDSTIPLIKHIYSKFLPRNYIATGLFVFVSVFSFITPLILKNFLSYVEKIDEQKHIYIGIIQCFLLFLSSFINMASQQYSYWFGFKTSLEVKGALETIIFEKMTKLSNLSKKNYNIGSMLNLMSVDTDFFQYFFCHYYIEIFLFPIQILSLLGFLIYVIGIAGFVGFLVMLITIPLSSFLGTQISKNLSTSMGYADTRISLTGELINGIKFLKQYAWEKMFCERIEEQRKLQLKYLYIRIIYWVLVQIVTQASSGLVLVSTFTTYTLLGYEVSLEIAFTSITILQNLRRPIESLPDCLHKFISLIASAKRIETFLQSSELQNQPFIHNQSGLNDILIRNINFNWNEHNLKLKNNKNNQNNNQNKRSIILSSGEQFEITNDFTFDGIDIQDDNYDYEKEYKINYNNNEEEENFMTDCLLKIKPLIKDRRLQQQQADYQDLLSINLPPPPSENVDFKAPKGLLTIISGGVRSGKTSLASGLLGEICKAVDKSSPDSVNSILSTIQQPFLQSTSFRENILFGKPMNMERYIKVIEACCLAPDLLAMGEGKDLTEIGERGINLSNGLKHRIQLARALYADSDCYILDEILSSVDPEIANYIFQHCIKGMMKGKTVILVTHQIQFISSADHVVVVDNGVLIQGTYLELLRMGIDFEMILKEKENRIEKQIVQLQEDEDYYEEVEILDFTMNNNNNNNNNNNNNNSNFNGNNKLKRSSISLPKGISIESIISKDFDQTTIEKAKLFVQEDRNKGDPGWIIYKKYIRMGSSISFFIFTCIIYLTSQIILLLSDYWLQSWASHDRLNVSEPTDVHYLLIYLAYIGGFVFTLGVRYLLIAKITFGSAETLHRSLLKSIIRAPLTFFEQNPVGRILNRFGKDISDIDILLLDCFSDVLYCGACLVTSIGIIIYISPYIAIPFVILIAINYIFQLFYNYSVLELKRIQSISRSPVYSLLSEVYNGLTTIRSFGQQERFFNMMKDNININLRVFFYNFAVSRWIGIRVEFLSAIVVLMSALFSIFNDNPGLSALGVTTALGITFNLNWFMRQFGELESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLVQGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAHNIDTILDSDKIAIIDEGELIEFDTPLNLIKDSTSRFSKLIKLNNNQKNKLN", "length": 1436 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VG9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSIIILSFILSIISFSNGTIVKCTSASCSSLNNNCVNHYCNPRAGCYGIDKCVRIDACHIVSCDLNNGSCINTKANCDDGDPCTDDFCHNGYGCFSLPNNKHPSVICQKNCNDNNPCTDDFCDFTNTCQHTLKNCEDNDFCTIDSCGPNGCVHTNISCDDNDPCTSDFCSIMYGCYHEQIECSIKVPCSTDIECNRYNLCETYTCDLISNICKYSTKFCNGFPCINNECMTGVIYN", "length": 237 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WA9-1", "protein_name": "Short-chain dehydrogenase/reductase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKKNIFFITGCSGIGFGGLMVKKLLSRGDYVAATSRNKNKLIQDIGSNENDQFLPIEMNLADESNVKEAIEKCIEKFGRIDILISNAAMGILAPLEETTDKDARTLFDINFFGPLNLIRNSLPYLRNNQFLKNNNDNNNSKLNGPRIIIIDSICGYSSLFNGCSIYCSSKFALHAISETMSIELKPFNIHCCNIAPGYFQTSFLSSCLIPDTRIAEYKDTHSFLDEIVKLNGSRFLGDLSKAVDVIIEISLSYSPPNHVLVGSDAFELFDLKYKKLTNDILINKEICSNTDKN", "length": 295 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WC3-1", "protein_name": "Cln5-like protein 2", "gene_name": "cln5lb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKLIFIIICLGIVDKTISSDFKSYNDGIYSFTYDNICSFKNSIRDQDVYELYYVQAPLLYATYGNLLEKINAYHSGIVLYNKNNGPNITIDYYAIPSFEATLFPKSIIKDSQGNYNITWDTHGLIEVTNYINETYWNKRQLIMYDLSGIQIKQYLSWAPIYNKTHTFYNLFNIESDLSISNSSKIYKNSSTCDDFVWASFDVLYKLGGTIASVQSDPQRDDIKLFISSGEPKIVDYNDSIKRNQIASFFNELKDFANLGKNKTALEIFNELITFFNGYFYCYIDGEYYEMKLSKQNPISFTYLPSPIPIGKRNFNEIKKLGFCK", "length": 325 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WW7-1", "protein_name": "Probable serine/threonine-protein kinase DDB_G0279405", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGCIFTKPSPEQQKFDGEDYECENKKNLNLISYIRNLLFGNNSHQQLYNEIIPTTTSTTSTTTNSVYQNIGLDGYNNNNNNNNNNNNNNNIMNNYGYDDYGYSYEEDEDYYDEMPIPTIVAQPQPQPQPQPQPQPQPQQPIRIVSQNQQIPTTPPQQISQFNITGNKSPSSIGSRHRSKPKETLRAHKKRHKDGHKMVNEYVFVRKLGKGTFGKVKLAYHHDTHHLYAIKIFNKIRLKKQTMGIGRPNAFDDVLKEIAIMKKMNHINVVKLYEVINDPQEEYIYIVMEYIEGGSIMSANETSEDLARKYFRDIVFGLEYLHEQKVIHKDLKPENLLVNSEGVVKITDFGVSHIFDDDDVVRCSRGSPAFLAPELCRNESQPISGKGVDVWALGVSLYCLIFARTPFISKTNSLLDIYDQIVNHEPTYPREISNDLMDLFKRLLDKNPLTRIQIAEIKSHKWTTISGTWPMNELDHLILSVTDQEMIDAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQNQNQNQNQNQNQNQNQNHNQNQNQNQNQNNNNNSLIEKSNISIPASSSSISNNDSCYENRNVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDENESQISRESANDYYLPFKTNKYLNNKSIV", "length": 695 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WX7-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MARTDNVQLPLENTSIEFEEEIIDSQNDISQQKNYQDFLKNIPTDLNERKEYISSLKKLIKLEKRNHQQIQGEQPNQQEGLNSDRPPPNHHGDHHHSLPPPNHHGDHHHHSQPPPNHHGDHHHHSPPPPHHHGGHHHCPPPHHGGHHHCPPPPPHHHGGHHHHCPPPPHHHGGHHHHCPPPPPPHHHSHHHHCPPPPPPHHHGGHHHHTPPHPPPHHHGGHHHHCPPSPHHHGGHHHHSPPPPPPHHHGGHHHHCPPPPHDGNEYLPQSQTNIEQCICRLNRKKELLIAKIQSIDSIIYNLECLNKQNYQNNYLPSIQLQPTQQPQQPQQTSIKPQQMCQQFFIPQTPNFPQMNNSAPLMYVSQIPVQQSFNNN", "length": 374 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54Y59-1", "protein_name": "Small GTPase", "gene_name": "rsmH", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNIFLSKSKDVYRVTSHKKEVKICVLGDANVGKTNFINQFTKSSFNEEYTPTIESRQNKLYKFNRKQFQIQIYDTAGSKELNLFVSDSISQCEGFIIVFSLNDRNSILKIQHYKTLIKNIFKDVEMPIVLVGTKMDLKKEITISKNECKITSVNNNIPNLFYTSAKNKESIIPVFKKLVDLIISKEKKVKKETESNNIKINNQNKIKKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHVFKTRSNSTLRMKKYLKLF", "length": 272 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YJ4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKVYQDEEFSFFEIGGKKIADLYVRDIITEIRKRGKEITGLGLKSKYELLCILVNRMKEENPSLNIPPKKRVLDFGSLSSTTSNGILQDSNKFFKKDNTHQHQQQQQQQQQQQQQQQQQQQQQQQQHSNNSDDDDDTHNYNDDSDESDDEYIITEEEEIELHKNLNLGDDENLLTLEIKLLESQLENKKFRKSLLLKDKKIKHLENIIQQQQQQLLEQQHQQQQQQQQQQQQQQQQQQRQEEEQQKEQQQKEEQEQEQSSLKNNLKFKDGANLFSIESISNLYNKILNEFNFKKIITEFGDSSLKIHEEFVKFIILKSINLNHNNNKNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNNLPNGDVNKNNNNNGEIIELVPPPKIDEFWKLMVLDTVGYQQFSNILGAKVNYDTDINPTRKGYQRLKDMKNLYFPPPPSTTELTTDEIWPNHYLLPIQPSPQKQHIQKQQLPSSSSSSSSSSSSSSSSQQHQQHQPQHKQQHQLQQIQEQQPQQQQHQQQQHQQPLQQQIQQQQQQQQQHQPQQQHQPQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQKKQQQQHQQQKNKENNKENNKENNKQNNKENNKLNDNNLNIEVHEDEGNRIINFLISPDTPLRNLFVAYAKEIGENFNSFKFYFGNELLCQNETPSQLLMRNGTKIQAFYLNKKEIKK", "length": 702 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YV1-1", "protein_name": "Rho GTPase-activating protein gacII", "gene_name": "gacII", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVRKLFNTSHKKELILDVDTTIVKIGTPKNVVLLTKWLDANGAIKEEGVFRVNGNTTTMEQIKKNFSQGKDDLTKYTSADIHSMAGCLKFILRELPEPIFTWDFYPIFIKIQCLQDESRKLFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQDQNKMTPKNLATVFAPNVLRPKKEEDNFQLMNNQDSIGVIETLIEEFQYISNIQKNTLNSQEIKVKSVLPFDETTNAITQQSLVEDYLIAKANTPQESSSFKKNLPFKKGDIIKLLYIKNDGNFIGEINGITGNLSQTYVDIIDISELAEAFTLTPPPIPTLPIASTILHTPPTSSSSSSSSSSSSILLTDNQPKLCSSTPRINNSPSSFSPSLSSTTPQLLVQQSPRQSPRQIPSISLIVEPNNTNQPSFGHGTLQRTSTGYFSSKPLSISQPINMSKPTNMSPPTHHAMSMHNLPPSNTTRENHLPPLPTKPPPLTIPSSSSLPTTPIKQQPQQPIQQPLTPQNHHHHHHHNNLSSSVNTANTGNCANILSPNSDRYLSSRSQSSVHLSGSSSSSSSSSSSSSSSSSSSSSTSNRKFDFSLKSKSSKNSPSKNLPPQPTTTSTLTPPPPPTITTTTTTTTTTTTTTIATTPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTITSTNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSRNTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTTHYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN", "length": 817 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA1-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSGSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA6-1", "protein_name": "Alpha/beta hydrolase fold-1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKINQTPKKHKIIEPNRKGYSIVGKNTGKPNKIYFETFGNGPKKILFITGFLSSSKGWCKQIDYFTNKKDQYEICVFDNRGIGKSNIDSKYSYNFSTKSMAMDAIDLLEDTLKWDKVHICGLSMGGMASIHLSSIIPEKVQSLVIACVPNGYFLPFFSMGVFNYIRAFFFTFNEKKKARIFQSLMYSDNYLDEKTNGSDETRSEQMFKKNSTGFKDDGPSFLTILGHQIGYITNRFSKKSLEVIKKYSIPTIVINSKKDSLVTIDITKKQIVNPLKPLNFHVIEGGHLSQLENPTFFNKLVENHVDKHSNWDHSTFFQVEKQQFQRQSFMTQNILYSKNYLSSNTLSSSFLNCNTLRSFFNKIKV", "length": 366 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZT3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551H6-1", "protein_name": "t-SNARE coiled-coil homology domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATRDITSSYILSRTECKNRAKIINSAININIKKSGSGYKRLEEENYQDIDIDNNNNNNNINNNNINNNDNDNDTTNNIKNSNNNNDIQLNILDTEINIEQLNSLPPWILKLNDIDENIKKIISLIEKFKKYLKEDIDKILAEDIEMESRIDCERSIELLTMETIRLFHKTFDMIKYLNKSNNSSQGENKMKKNTQRMKSAKLKALLITFKHIQRSYLALLKKVSSLQRSLSSSFLYRSGEYDVNNDNEDYGENSSISNSHYLQHHHNNNHHHEDDHDHEEDHEEIMDELNEMATTLIERQRVSQLIKETSHLIQDVGSMCVKKDSIFDRIDYNLAEGEELEFNGTILICDGITNGYERPENEKRKKLLLIFAVLIIVILFIFILKYVIEI", "length": 391 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551V5-1", "protein_name": "EGF-like domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKYLFRFFIFLFCITRINSQTGCFFRETGADYNIDSVFSVFYVDNLFNIFGMTFYMKTCTYVTCDPWRQTMICGNYNSTTFQLGPYQSQKVTLNKNGISIEYLSDKTPPNHPCPTITTTVKFICDKSVLSVPKSDYDYVGTCGVQIKLFAIDYCQTCSKCIASHGSCNSTSGWCTCDSYTMGLNCDQLKASISSVVAPTIDGGSVIISGDFSSIYSLGPSLVITIGSLVCSQVSFAASTTQISCTIGAGQGYQNLTISDGSGSTLQYKQFYYHYPCQEDCTPYGTCNDVIGKCTCNYKYSIGADCKTLNLQLTSVKPTLLDGGQAYLVGDFSNVTGLTLSVKIGIKECTDVNFNETTLQCTIGSGEGIKDIIITSDLLTYSKIGAYEYQYYTCPLGCLHGTCNKYNGLCVCNNGTYGDQCQYIECPLDCSTPNGVCDKDTGICDCDDKYSGEGCDFIKCPLDCSTPNGVCDGKTGICNCDEKHSGDSCQFLQCPLNCSNPNGICNRNTGICSCDSKYSGEGCDFIKCPTDCSTPNGTCDGKTGTCKCNNPYTGENCDEIAKCKQECSLKHGTCDSHTLDCICDTQTKGLSCEESRLLIESADPTSLDGGTTTITGYFGTTTSLLSIKIGDSQCTNIKVESDTKLKCDIGPGEGTHNVTVTDDDLSFTGVGMFQYVGQINKISKISGGAIAGIAAGCVVGVSVLGAGGYYQYRKNKKIELFMS", "length": 722 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q554Y8-1", "protein_name": "ADP-ribosylation factor-related", "gene_name": "arrB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGMGFSFIEKKDFKRFLILGIDNSGKKKIMYRLKFNKDIPTRPEKGFFVETFERRFKYNNEDVCGQNMIRPLWPNYYTDETNGLIFVVDSSDQERIEEVRLEIKKLDENIKIFKNHPFLIFANKQDLKNSLSIEQLIDKLELNKLSLNRKWHIQSSNAITGDGLEFGLNWLFSSSHNFT", "length": 179 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555E8-1", "protein_name": "Putative fatty acid elongase DDB_G0274669", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METVQSIITEWTDPKSWEKLVQHSFKDSNWKELIDPVNYKFNFGVTPFSQFQIIPIVLVIYLVTIFSIKFLMKNRKPFSLKFISILHNAILCIWSLIMCVGVLYEIIKRVSNEGPLFTVCEDPNGGFDKGVTYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCKTVWWKKYITMIQILQFVCLGIAGVLHVYTINTIGCFTHYPAFAAAYSINFSFLFLFSKFFVKSYTPKNSNSNTNIKSKKID", "length": 251 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555Q5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRSIRIKKINFHIKQGEEQLKQELNNYCEETSLKYISARIKKRHNDFTINAVKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDAPSHYEMLENWTVTRDSTWDNLENEFTTQEILEVIKQLNPHKSPGPDGIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPILTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLTKSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSDHREKFQSFADDSASMVPDSQQLELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKIPEILNTIRSSLVLWKTTDSTIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNTKMLVDFKITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKAIDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPKILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI", "length": 655 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556H5-1", "protein_name": "Cofilin-3", "gene_name": "cofD-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTPKPTIAKISPECQTHFQDIKFRNKYQGILLKVNEESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRYKSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDRITPKTA", "length": 138 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556J5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWNHNLCHAINLDRQFDHINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNSYDYSFSVHSSQQYSRHYPNSCNNEQTKPKDYYDHASRSQHDYHANGSNNGNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNNNNCDSNYNSNNNNSNNISIANIKYQQDQHYQHSDTYTSHQYNSFNDNNNNNNNNNNNNNNNNNINNDNDNNGYNQYDESEEDEEEQDDYDEFDIQDSASSYNDNCGVLNSNTYIYDYQSPQQPLYSNEYQNNNHQPQQTDSYNYNNTNNDNNSYNINNNNNNNSYNNNNNYNNSNNNNNIGNIDSNTNNNNYNYNYSNNGDVYNGYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNMNNMNNMNNNIITSNREQFYSNNNHNNINQYQYQSQQQQTQQQQQQTQQQQQQTQQQQQTQQQQTQQQQQYLTQYYQQELYSQSYKCRPYYQNSFVISKC", "length": 480 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556P1-1", "protein_name": "CWH43-like N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFFISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICGVCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLTTSVFIGYIILQFFIDNLAPILKIISALSIFFYLISFFYEFSKITINFQINTISQIEHQKEYNENSALLISQ", "length": 251 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556R5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLINAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKPTLQPSTICADTGVYSESNFTKTIQR", "length": 861 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556X2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557C9-1", "protein_name": "Homeobox protein 5", "gene_name": "hbx5-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METIVNNQNNGQQNTVPTQSFSSSVYMNYDFFDSQQLQQPQHQPQHYQQQDSFVSPNLDNNNPQIHVQSNNYNQNGFVGYNNSNNNNNNNQHMNNQYSNSFHNNNSSGFMAFQNNSSNFNNQNNNNSNNNNNNNNINSYDYNNSNNNNYNNNNNTHSNNSNNNNNNNNSNYWNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNHHHHHHQQQSQPTSPYNNPIQHNPNDMKFNGQHNPFNGNQMVMDNNNNNNNNNNSNVFNSNSNSNVFNSNSGSFLQINNNNGSFSSYNNNNNNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNQFSQSYDSTLGNNRFSSMMGQPIQQQQSPPQQQQQQSFIQSSPQAIPASNCNGNGSTSSSTSPLSPTLIGSAPGTPTSMLATTLFGFNLSSSPTSSPSSPVKKGKSQSALALSSSGGSGGSSGRKKPQKHDSMSSITNTNLKSTQASTLKESKRSNSSPNLKKQMQLQQLQQQQKLNENGTLIPPLPFASISENITNNNNNNNNNNNNNNNNNNNNNITNNPLSGSMEFPNSNNINQSSDSINGEFNIGQPESPKMYNSSPSPPPNATSTTKGGKKSKKSLHISTTQQSPSLNGSTGGSMLTPTMSGLSLSGGGSGGGFSPLISPTGTTSNKDLQSSPSPSPLLKSMSMGKLDLQDSIDSMSSPLSPNSSLSSSNGLLPPPPNSNNMNSSGGIPTPSTPTSPPPLTHHINIFSNLEFVKQLKDHLLPNDFKPEEHALERNLLRFQQFVKTLAEPLQRDVVTSMFELSVDAQLQYGSNLDNDNLSALMLFRRKILNFNLFRMMMLNDPNSFIPLPSPFPIQTTTISSNGTIVNPTNVNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTSANTVQSGTTSNSNLVFQQTSNSNTLSPSQQQQQQTQQQQSINGSSTGSLSDAQYQDLGIHLDTSSANSGCGINVSIGSSIGGGGGGSSLNGSNLNGSSSISGSISGGSSNGGGQFIMSPQFSLDGAYQQQQPSSYNINNEMELAEKDEDEIFNNNNKDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSSINSNINNVNNCNINNNSNSNNGSINSPRPSTPTTLNSSGKRSKKIYRGDSFGAGNDISTGLMASSDQIIPPPQQQQHQQLVNNNNNNMNNSENNILLADSNKGLSVSLGSLPTNTPSSMEIEQQQQQQQQQQQQQQQQHLNQQQILHQQLHHHLSSSLGGAQFTNIQQQQQQQSGNIFYNSPYNSSQVYMNPYGTSITNTSLAGPSTTSSAMQHMITNMTSSNIIVNNQNNNNNDQNNNNNNNNNNNSTTNSNVNNNNNTTNTPSSPPQPNNCTPTQTSIITSNGVVVPSLQMRGTITNPPPVLPTPDTLVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQETPHTPTSNSISSPRSSPVHQQSPSNTNTTTTSTTTIRHSAVTQLSFAGLHNQQVSPISPRSPRSPHGTSGDYNDGSQSPSSRRKNRFTDFQIKRMNDCFENLDKNNNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPTNPLTSSTNNGNNSNLALQHLQQQHLQQVQQQQQQLLQLQQQQQQQQQQLHQQSANTTPQLNSMNPNSINYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNITTINE", "length": 1723 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557D0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTGSNNLNSLNNNNNNKISLQETIQDIIKCSICLNSPKNPRFCPRCSALFCLECIDRWIISNPTCPACRDTLTSDNLNSNLIVSNILNELVKSEQEEYTSSDICNYHGYERLYYCSTCQEPICSDCALFKHKDHKIEKLSINFNKNLEILKIEEEALKKRQEELIELNSFLELDAETLLKNKSQIEKEISKVVITMKARLKYDFERRYNTILESQEKINNELTHLDFIYNDLLNHYKKSPSSFVLTSQQFIGVLQSVHKNSIMDIYTPINTDLTSELIPPFENRLLKFENFTTGDCLFSSRIAFYGMTWEIKCGIEEDNCFLNLKVLECNSDGKYFYMFTIVNQKTNVNKLIEFDLPFQAGETFYIPNFSSKQTLIDEGFILPENDILLLQFSFRPQNYFCYSNDLKRYIDILEYRHRGYFGEEDEDDGTIETTVTKLPNDKSTILGSDNYNDNYNDDGIGDLDEDEEEEEDDEDDDDNLDDHLQYDNDDDEDEEEDDEEQNEEDNDEEGTNIPTSEYEDLDTSSASVISNINRRDRFKNNNINNNNQFVNSNNNNNKYNTTNSNNSIVGSSRYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYILNRSYSTNKIYNFYQDEEEEEEDDDSNIDDQDEDEEEEDSEEESSLSSSDLQDLDSSGDQSSLEFSFSKYTNNYYSNNNNNYNSGGGGGVGGAGDNNKIECIRRDFNNLLKRINFTNSQLTNLKPGVPKDGDLLNDDENDKKCNIPLNEDEEEDEDEEDDVNKNKTTSTTTTTTTATTTNEVVTINPNTISNNSQDEEEVKSDIVKLLENGIANMLNNSNSSNRSSNNLKQQQQQQQQLQKDDQKQKDEQQNKSNTGCDIDQLNILSKLSIKESCDSIKNNDNDSLGNSTNNNNNNNLNNNNNNNNNNNNNNNNNNNNNNSNNNNLQSFLQSNENTENETDFNDNNTNPETNTETENEYLTSSNMNLDGGESEFDSNKSYEGSSTDENFNSDEDYQDEDNFNQDATGSESANNDDYLDDNEREGSDSIENYDEDIEKVLTSHNIITTPSIPPSQQPQPQLQTQPQTQPQSQPQSQPQLQPQSQPQPQTQPQLQPQLQPQLQPQLQPQLQPQLQPQLQPQTQPQQQKKYDDLSENQIQTENRNKKIKEEINNKTNNDNNNELGKSSKSNTSSSSSSSSSSSSSYSESESSESDSNNEYDNEDEDDIVNQVSNFNFNFNDASNFKNFSFRPKFPSDENDNDDNDDDYEINIDLKNIQKISPILRAIENGESNINHYQSPVSLSSSSSVSSFSGSGNSVPITATTTTTTTTTTTTTTTTDDDSGINMPISPLSASPPSPPPQNEPQINNETNDNDVKLPQI", "length": 1364 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559A9-1", "protein_name": "Probable polyketide synthase 13", "gene_name": "pks13", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENFKYRNNENDVAIIGIGFRLPGCKNFTPNELWNNLKNGFNGVVELSNRWSDNFYTMGKVSSAYAGLLPFDELKSFDPLFFGINPTEVPTIDPQQRILLKCTWEAFEDAGIDPIKIRGSNTSVFIGTSTNDYQRIIREKDQTITNAFGTSLHATSNRISYCFDFRGPSMTLDTACSSSLNCVKLGYQSIRDGTSNLSIAGGVNLIIDPYFTASISDLNILSKTGSCKTFDASADGFARAEGSGIIVMKNLKQAMIDGDKIYCVIKGASSNVDGGGLQDKSNFYAPSSLSQCNNIKMALKSTNGTVEPKDISYFECHGTGTPTGDPIETRGISMVFNDESRSKENPLLIGSIKSNIGHLEAGSGIASLIKCCLMFKNKCFAPNINFKVPNPKIKFEEWNLKVVTEPIQFTKSNTCIGLSNFGVTGSNCCLILSQFNNNNNDNQIVGNNNNIKSNKEYLIPFSSNSVKSLENYQQLLIKNGENEFKFLEFIKHQIFTKPTSLYQRSVVIASSWDQFNNAKIMKTSNSKSSNISIERNNPITVFVFCGQGSQYDRMGLELYNNDFIFKESMDLLDNKLSKYYGYSVLEKLRNCDSKSIQHPMIAQPVMCMFNISLFELYKHWGIEVSFIIGHSLGEIPAAYCSGMINIDTLCYLIYHRSIAQTKTHTNGRMLSINISADEYFSQYSKQYPDIEIACFNSPTSIVIAGNEQKLNEISEILKEKGIFSAMLASLSSFHTSSQNKVKEDIVNKQFDSKQSEIPIFSTVTTNLFDSVTSPFNSSYVFNNIVSPVKFSQTISNLYKHIESNQLGNDIVFIELAPHPTLQFYLKQMIPKPTNDDNSIEFKVSVYSALNKKNNDIEEIQRTISQLYCDNGYNVNFKCQFQHDDTHGSINSNINQLSNISLPHYQWDDEKYWKEDPSISKLIVNGPQTDNLGYLNENSPNSKSYETFIDIKRPPFQYLKGHMVKGKYYFPGCGYIDNLLKIYKSQDLTINQMGFKSPLIFIEGVNQALQTNIFKKSTSNTTTNNNDEFRVEYHFNDQKTNRWILSSFGDFQLSNHSSNSDNLEKINIKQLIQNQCNLTKLSRDELYSHIKSKTGLTYNGVFQGVNKCYLGENCSLSEVSLELKREPSSFFNTAVLDTCLHGMLCLLEEQSQLVFDRIEGFKYHSSNVPTSEEEMKIHSNIYVYSTINPSRIGDSYSASIVIMMEDGTVLIEIENAVCTSLTPIKESISVKYPTNQLFSMYLQSKDSPIPSPLNFKSLYNQNQQQLKIDKQFTDWMQKCEKFISNQFFKNIEKRNPEINLEILNSKTIIELKSKYCQNLKNERLFQFVFETIKQLGVNAYDDDDDLTIDSSEDRKSIYEILIKSTKVIPKLLFPLEDEDLTIDSPQSLFENGLLDRFYNNPNLMTNQCQLIAQIIKESLKPLLNKKMVFRILEMGGGTCSLSVVVLNLINQLLLENPSFEIDIEYTWSDISPSFISAAKEKLSHIDKRINILYRSIDIEQPFIEKQDLSPSYYDFVIMSNVLHVVKKLSPSLDEIHKILTPNGHLLFVEIPYKELISDSIFGAFNQWWAFEDTDIRKDRCSIPPNQWIQVLSNHNYKDTIVSDNKECTWCCFVIHSQKPSLLELSKKIECNQYDNIIVFGNENSQDNFTKSIKLSYNNNIIKWVSNIVEIKKFIKLNIITNNSIIYFTKGIEELTIDNFKLINFQYIQINQLLLKYESKCKNVLVTRDCDGSNYLASSLIGAARYFDEYRQLELFTLDFDNDTIQSCDECSSSSCSNLIKLIEPLIDPKINIQREFLIRNNRVYFERAKLETNLKKSFKSESFENSNKLISTLNFNLDYQLQSKPFKQLLQNEIEVEIKATGINYRDYLVFTGSLPIEKTNHNGISNQPEFGVDFSGIVTKVGGGGGNGEFKVGDRVYGIGHNTTSSHITIDSRYASLIPNSLDYIEASSITSSYILSLYGIFDIGNLDIQDNESILIHSGTGGIGLSALNSLRWKGHKSHLFVTVSSKEKEQYLRDNYGSFITGIYSNKDKNYPKLIKEKLNQLGSNKQGVDLILSSLPNGDDNLNFKCLAKNGRIIDLSNNIDLFNISKSKIKKLLNTINDGFESGELQVIPIIEFSNSNIRDAIEFINERQHIGKIVISHDDSNLLIDLINKHSNQPNYSILKSDYQISQSNLGKNILITGQSGIVLEILKWIIKFSNSIENVIILSKSLMKWELELLIGKTMKKANNKIKFHFKSVDVSDSIQVENSINQILNDNPNIVNIDSIFHFAFTQITKKVEEIDMESLNVSHNAKTIGAINLHNQSINRNWRLNNFVMASSATSIIGSTDQCSYVCANTVLDSLSKYRKSIGLPSICTNYGAIESAGFVSKNESVAAMFNGIGIISISTDLILGTLDLQIQNQQSSTNLMLSDFNFLNFVNNNLQLSLISKFDFQTNLAKNQVNEKLQNQTQNQNLQIQSPSSTTDCQTIIKDSFLHKISEVLSIDISKLNLDLKLLDYGADSLAIVQIKNWIDMEVSPNLIVIQQLQTFTITSSIQYTINSFLKKKVQSQE", "length": 2551 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559I8-1", "protein_name": "Uncharacterized protein DDB_G0272530", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIKLILVLIVFLTIVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCESNNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDVCTANNQCKFNNYCKSGKCVPLEKEGSSCDKDSSCSLTNACVGGKCVTKYQKPLGAVCNSSNECQVFSGHVCGANGKCSVYNQLLSKCKENSDCGPNGMCMCKSETENVCVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYPIFMCYQYSCFYMNQFIRSTQNYYKSFCS", "length": 301 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559Z2-1", "protein_name": "E2F/DP family winged-helix DNA-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNISLLLNNRNRNRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNGNANESASLNNGSEEIRSNPSSNFSSPIQSSLSSSSSSLSSNQATTPKKRSHAHKNSLKCQSPQMSPQMSPQMSPQMSPPLQYFPQHQMQHLSQYQLDHLQQQQQLIQQEQQEKQQQQQQHQHQQQQQEQQKQQQKQQQRLSPQPRSSQPRSSPPRSSPQRSPQLNQQEGHINSVQTYSGNNINDKNQNNTNNNNNNMSNNNNFHDDNNCNVNYNNIRNNSNNNNNNNTNNNNNNNNNNNNNNNNNNNNINNNNNNNNNSNNNNWNNNYCNNSFADETNKNNTYGMEYINISEENQYNNNNNNNNSNNNNNYNNYNNYNNNNNNNNNNNNSNNSNSNNNNNNNNNNNNNNNNNRNNIINSNINNSNNNNYNDNGYNNNSNINSNDSYNNNNNNNNNFNNNNFNNNNNNNNNNNNNNNNNNNNNKNNNNSNSYNNNNNNYNNNNNNFHNNNNNSAHNNNNNNYNNNNNNNYYNSNNNNNFHNNNNNNNNNGNNFNNNNNNNGNNGNMFTNVNSIDNVNRNNYNNYNGNNNYNGNNSNNNNNSNNEVSQITTTSLPVKKTKVFKAPREKKFKRGPDQDIREIKPATALLKQYFIGNSITEFNAERVGSILKINHEKLKDILDIMECASLVINNHSNNYVWLGLDNPGFLKLVFNVFHCSSNLVTKEPEFACLKCKENAYRCPTSVDLPKDTRLGSTVCQFMKLLLSKRIRTNPVNDFLTIYQVCFNFNFCSEGRCPEEDFKYLRNTAKVKRCYDVANVFNGLNILEKVGKSKIHSYQWCGDFTIQDCENGCPFGHPLLTPGTAYTTNPSPNPFNQFSNAYISSSAQSSLSNSPFIQGGFHGNNNNSNNNNINGNNINGNNNYGYNNNNNYNNYNSNNSNGFNNGNSFFQQQQPLVNSGVSMVRNNNYSYSP", "length": 964 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55A39-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSNETLPNSEQENNSKTDTKNDNKNIGDENKIIDTDKDMKDNDTINGKENGNININSNNNNNNNIDTDKEMKETSSIEEDDNNNNKNQNNNNNNNIKEENDNLTELKNNNNKENKENKEETIKEDKEKENNKEPVKNKEETNNINNNNNKNNNSDNINNNNNNNSKETLNKISSMSKVSLTSESSEINGQVNTGVVNNNTNIDITQTNLDEPRDSRVIKSILKTMGIQAHEPRVVNQLLEFMYKYVFEVLQDAMIYGEHSGKTDIDVSDVRLSIQSRVNYQISTPPPRELLLSIAEEKNKTPLPPIPNRYGVFLPPDEYCLTNPNYQANPTKPVFQPVQPLVGNTSRGNYNKKQSDKQVSIKFNSMSNNSTTTTTTTPPTIGSQNGTTIVSPPNLGSLGTTTTTTTTTITPPPPILPLSSNIKPPTLSIPSSITSPPTVTTKNTSTPIIGLGSTTVAPPKTSSSSSTIAPPVLSLPTSITSPPTVTASSTTTTTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMKDDITPSSTPQQPSQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTTPPPQIKEEK", "length": 619 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55B17-1", "protein_name": "Amine oxidase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKKILLIFALFILVNINFASSEFKKNETESANLKSLYASYLMKNNNNTKYNNNDNSNNTNIYNDSVTKNKSKNKNELTVGIIGGGIAGLYAGMLFIKSMIFDDLGIDYTILEANKERVGGRVYTHKFDDHKYSYTDLGAMRIPLTPLMDRIVSNQNYSLFSKLAKGGYQIPTVPFLISVNNEISYYNGIRVLKGSPVLNPSDPFNYSDSNNGGPGKGIPDEYANRTVDSLILPVFYQFINNLTVDFYNGFKQMLKYDSYSARDYLKTFHNYPNSVIEYIENLSTISGRLDQTSITELLMSVFDFSGEKFVCVEGGTGLIVKSMSQIIKKKVEMGSFVTKISKSFDKKNNEIDGLNVEVVRDSNFGGSDTEILKFKHVISTTTLPALQRIDTSDLKLPLKLKVAIRSLKYTGAIKLAINFKYRWWEDSEFMSGKPIRGGSSNTDLLLRQVVYPSYGINNGTKGVSGVLLASYSGGLESIRISSMIGKKDKERKLLNIVLRDLAEIHNVDLKKLKNLYKDHFFQSWDNDEFSSGAFALFSTSQYTELFPSTGQSHVDGRFHLSGELTSVHHAWMIGGLNSAYRSVDLILKNEGFEDLRIKLRNNWGTIEQAEYPSLDWYKYDSDINHYKLY", "length": 630 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55BT6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLLYIVVFLLFAIKLCCSEYCGETYCVENRNCYSFIGCRNSTCLYETIDLDDEVDCTVDTCSDRYGVKNTPNNSLCPPENLCDMFLCDTQSGCVAIPKVNCPAPNPCQIPLGCNRETGICEYDEIDCHDDNECTNDYCDPILGECVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYCDFKNGCVSQKNDWNCDSLSACSEGICTDNGCVQQEVDCDDDNPCSEDFCHPLFGCGSILNDTICTNGNKCVNSTCTEDGCSLPVPIVCQDGNPCSDDTCNPSTGCQFTLNNSNCNDGKKCTIDQCGLNGCTHTNITCPPKRVVDIILIGLICRNHYCDQSTGNCVPDMNSVSLLCI", "length": 370 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55C69-1", "protein_name": "Chromo domain-containing protein", "gene_name": "hcpC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKTNKKKIEEESEEEEAGDVFEVEKILDKRVQHGRIQYNIRWKGFSADYDTWEDEANVVGCPELVREFESSRIKEKKKNRKRKNVIIDEDPTEEISSSLSSILSSPQPQPPPPLQLTNHSPASSELAITTNTFLISNCTSTSNKTKISIENEEIIKNDHARYGVPYVEGIGFENGDCVDEIVGCKPFGENNLLYFFIRWRGKEKLSWVSNESIKQKEPLQLIEFYESRLKFGYKGEEN", "length": 239 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKNNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH7-1", "protein_name": "SsDNA-binding transcriptional regulator", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIFKITRTKRRWTKNQKKILVMKVVEKKVVVKKSKTPNTSPSSSSSSSSSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQLVVILENGDTIKDWIKESK", "length": 129 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CJ7-1", "protein_name": "diaminopimelate epimerase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEPSIDNKPSFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIESYMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI", "length": 355 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CV8-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MELLVGGTILGALTYAYSSLKRTIPEGAHACSPFYPEKYVGKWYEIARLDFYYERDMNNVSAEYTLNKDGTISVINSGYNYVEKKRESVNGKALFVHGSDEAMLKVSFFGPFYAGYNVIAIDPDYKYALVAGRSLDYLWILSRETSIPDHIKKQYLELAESIGYNTSKLIWTEHDNINNKKD", "length": 182 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D49-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D57-1", "protein_name": "J domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIQVKNKIKIISILITLFILTINQVVECKSSLYYSILNDYEKGIDYYKILNVTKDSTYSEIKKSFRKLSLKHHPDRNVEKSSHSLYILLNQAHSVLTTDETRKEYDELLVNGIPWHENYYGKYAYRYTGISHDLRHVLLGLIIVITIGKFVYQYNKHHSMIKRAKQTDQYKKRLAQLDGDEDEIQLVIQGADKPTISSLFIIQLFFIFPFKILKSIYTFIFINKFKFIQKTDEEKEEEYRLKMGYTKEDWEYHKKKSIERMEKLKQSGKYKKYLRSKNK", "length": 279 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E25-1", "protein_name": "DRBM domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKSHTSEKVQLNEFLQKKKQPIPIYHTESKGSEHNKDFKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKKIYDEKLQAVYNSVSSGIEGLNNNSFFTKIENNNNNSSSNNNNNLDHNHSNDSSHTSTDNNDNNSNNHNNNNNNQINIDLTMENVNISQSKTITNEGTLNNDNDNNNNSIQQQQHQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCFDKDKTNLKKKKKIPFSYNTDLIEHIDLFKRQDFPQTYPSRTTYTDTGHTQQLQKQVFLLTEKIGLMELFYKKQIRVILKSHHNLETELSALKSFVEDCSVTPIEGLELYSIPVPLNPNAKPSAGTTPVLSKSETQNEIIQPTKPPTKPPASCLIKKKIPNVNMKATNKTTTTTSTSTSNSSTTIKTTDSFKNTTNNQHPNTLKPMVSKINQQTSDFIFPLPKPIIRRNPIGNGNLEKKIEKKNSKPNTIVLGVDTQSQSKTKITPSPTTPPPETTPTTPTTTATPTTPTTPTTPTTTATPPPTTTATPPPTTTATPPPTATTPPPTTATTTPPPPPIIATTKTTATATATTIPIDLNEIQIPIRSPQDLTVNQSMISTAMMIASAAQRNPKLTMKLKRKLEESPTLMSKLQKIQFEKEEEILCSQDLHSPIMSPQSPTHQPKTLEPLSPTKKSTQKSPPPTSPSPIVTRARASSNLLPIQNLISKK", "length": 733 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E47-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E48-1", "protein_name": "thioredoxin-dependent peroxiredoxin", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKLKVGNIAPDFEAKNYLGQIVTLKEFKEKSQPIVLYFYPKDNSPECQKSCEFRDKYQKSIEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGILLPGRKTFIIDKHGFMAVFMMVYSVQLLMSMNL", "length": 142 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55ED8-1", "protein_name": "Decapping nuclease", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQTLNVIGLINFIKKQRSFNKSPITITKPLEITRFSYEGNQLFPAKLKKFKNPTIDSDLLVGFQGPDSIESDSQTPLSLVLNKLIETKHDVSKSNFISFRNSFRKLFESMYDSEKWNIQVQRINSTIHLGMDNPTQDFHQLKNFHLKSMYSGNYFEKISTIDNNNNPNDNKHKYCSIIQSKLFNNNFILACEIDCWKKSIQNNNNNQNNNNNENNNNDDDDENYNIDDYVELKTSRDIEDSKANYQFRSKKLIRIWFQAYIAGVSKIFLGIRNDDFFLKKCLNFNTHDLPNQAINWNKDEMLIYGNEILEFIKNNTCSGKSYTLSFNYPIISLVESDSINIINDQYLQYYLNIPKNFENNYNQNNNQNNNNNNNNENNSDDTKNNNIQNNNENNNIQNNNENNNQNNNEKNQKRNFGEEKEIKGDENEERLSKKQKKLE", "length": 440 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55EZ2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55F94-1", "protein_name": "Dynamin-like protein A", "gene_name": "dlpA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEEIRRTNAAAANAANKELNEQVEISSLEQMGKLDPSSTIHDMFSFFPNEVYNSYEKLQYFSRDLNTAVSHPEIVFVGPRSSGKSSLIEAFIGRALNIVGGGNIVGVGGSNANGCSKRVLYLQFTNNIDFEVPKVTIKKDNTIKEFDHDIIVSIEQLNENLAKRNQLTNDYIEEPIYVSIESRTTLNLTLIDSPGLLFDQSQAESNKIESIVSSLLRPSHRLIIAVESCSQDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTLPNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSYQDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTSEGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGGQQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDTFVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPSA", "length": 880 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55FX4-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDINSNHIKKINDFKDKGNKEFNKEKNKDKLNKRAITYFQLGIKYFNDEKHKIEINDQINKLISILYSNLSLMYLKGDEIILSLEASNKSIEFNNQNSKAFYYQSICKSYLCDYKGSMESIDKAISISKQDEKVVQQRNRLIEITNNKVKEDVYFENVLKNQKLENVAYENSIEKGRYLISKRLIKRGEEILRIAPFSFSLNGKYVSKFCGVCYQKKSIDNLLKCKDCDDFAICKECKAPNEPLSKYHPNDLCVLYKLNNEYYKMNNFEIANEDNKERGLTDERRLYINTIYNIFKNKTNNKAVVEVDNAISSSVIDVLNLSKKLLNHTNESQRAYSDSTKMKTDILELIFKSFYGANTLKKDEISNIIRIVDCNSHGYSDVISQKKKASGLYPFSCYTNHSCIPNSDYFIDKHGVMVLYASSDIQESEAITISYIYFLNRVEKRRKDLLNGHNFFCTCDQCSFQSSLTEEVCDKCNEIIPSTIGNSNLVYKEPKSLKETGFNYICPKGHTKSSLVYDIDNDQLYPTIAENYSKCKDLRNFRKINIFKEMLENRDFVKKLTPREFEVTPLAKYIANPKKSNSMLFEELINLVRGSVECGLTKSIEESNYSTYLVYDYYDLYKSLLLESKPQILKLNSIRDIIIKLLTPMVYNQNKPRIDKKLNKHLSNKINLKKNK", "length": 676 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55G93-1", "protein_name": "Tubulin-specific chaperone D", "gene_name": "tbcd", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENSEDISLNSSEKSIESSVVNLEDQQQSQQQTQQQTCQKTFVQEAPELTILIDKLIQLKHSNKDELISNTTRIIYIIDQYLEQPTLLDIHLNDIIQPLINFIKSNYINNSNNNNTTTTTTTIMTETEIVIKKLSIKNSFRIIYVLSKVRGFKTIVKLFQHEAIDLLPVLDQLEISYHQWVNINKQRDRLNEISVSYSSGINLKNYIKPEEESEQEVVDENNNNINNNHNIDDEYNENIISWEEVYVLALWVSLLVIIPFKFSSLDSASSGTASAAGDGGDGDGDGQLKSISSRILKLGKLALSDVSKIRDSFSELLSKLLNRPDMKFEQKQFIKWCTNSIQLISNNNNNNNQNNSSNNNILLIIGIYSTLATMFKKGNRLDFLPIDMNLYEKIMEANKYLSLSGSERITKKIFLKLLQRIAIIMLPPVSASWRYQKIIKPLLLKGELIKQINNNNNNNNNENNNEEGEEEEEEIPEEIDEILEEIMKSLKDKDTIIRWTSAKAIGRIVNLLPKDMGDQVIGLVIDQMFEKNEFIDADPSAWHGGCLALAELARRGLLLPERLDVVVPLVIRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREINCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPIVIKHLATIKIYNWDLEIRQLASKSIHLLTNINPNDIVSNYLPLIIPNTQSDLVHVKHGASLAISEILISLFENNNINLLSDNLKMMILMTIKNTKNEKLFKGKGGVLIRIGMCKIIYSICLVEFSLDKNLSEIKKPTESTSTNGNEDRAAALKLKIAMLKAKTASQINKPIITPPSSKSTTNNNNNNNNNNLNDNEIAFNIILGYLNENLNHPNEEVQKEASKAFELLFSKYISSNEKISLLLELIDSHCKTLKFDINRSARRGSSLLLGSLPFNSANLSYDLLSKVVNELILSIFQDDPKFKDIETRVNSISSLYKIGIYILNLIFKNQENEQKEEEDFKKSKNYNLFIKIWNCLGLATNDYSIDKRGDIGSWVRELSCKVLFDFIKFIITNQNSSTTTTTASTTDLSIENLINEKMITEFICKLFQLSGEKLDKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLICKVLKFNCYLYPLLFGLFSSLGGTSKYLINDSIQSIKQYFSSFDNDEKERFEKIISFSKAILEITNNTTQRMIQPTFRSIYNLLSTHIFDFLIINNLNEQSIFETILFNCYQIIESNQDDIYLLLNSIELFSYFFIQFENNNNEYIKDYSLKALLLLLSNLKYPKVRKLASDQLKKSTRLFINNNGDDETPSLIKSLIFNTKWDDSVDLIIEPLKSLLLLLNQKHLLELLSENPTKKPIPLAPPITSIEELKDKIQNPHKQSDDNNNNNNGELINNNTENNNNNNFDDNLPEDSQDLMEI", "length": 1480 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GP8-1", "protein_name": "Rho GTPase-activating protein gacO", "gene_name": "gacO", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKLPPPPVQSSPQGFQLPSLHSVQLKPVRPPPQPTQQQLASNTSPREVGTSLSPQSPSNNINPSSSSSSPSSSIRQSPSSSPNVARKVPPTPTNNNGGPPTTTTTTTTTMPPPPAFIKKLSPSSSPILPKRIVSSPPLNGNTAPPPPPIVHLPPPPPTNLPPPPTLSPSSSTTTSPSSSSLNLSGGVPLPPRILRNSDGSANNNNNSNNNSNNNINSLNLSTSGGIPPPPSFFNNNNNNNNNSGSFVNSASSNGSPSLQSQNSVGYFKPPPPPVPTRSASLDPKQMGQFIKPQQNQNNSNNINNINNNNNNIILPPPPNININNNNFVPYIPSNNNQQQSTTPPPIVSISPLKRNSIDNSVVNKRLSQDLNTMLVNRLQHGLSPPVATPFFDDKILGSASKSAELKEKRDQEERERRERERIKKEKEDSEKKEKKEKKGKEEQEKKDKKKKEEQEKKDKKKKEEEEKKSKSSSSSSSSSKKSSSDNTIVNQNIFNNTLSQIMENQRDAQSLSPSSLPYPLILKLLTESIMSLNGPYTEGIFRITGSGTEVNRLKKQINEHDFSLDTQDPHVLAGLLKLWLRELVHPIIPSELYNDAIKSRSKEEVSRIISLIPDQNKEVLNFLIPFLKNVSQPHYAQYSKMDIDNVAMVFSPGLLRSTVLTTDLLLNSQYEKDFVKCLIEMSP", "length": 684 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GR8-1", "protein_name": "Thiamin pyrophosphokinase thiamin-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKQEEEVQQQQQQQQQQQQPDKNNKETITWDVAEYGGYLFDKKLKAHNPLNHQMPLQYHHSQSTPHIPSSLSTSSTTSIKKPSSSLSDDESGGSSSSTPHSSNTPRKQFSFDDHCALILANQKLPKKLVDYFWDKCSVRICADGGANRLYSLGTKINQSSRWIPDYIKGDLDSLHEGVSDFFSKKGSSIVLDSSQDTSDLQKCFELIIDLEKGSGIKYRKIFILGGLGGSFSHEFANVNTLFDHPGRKIILASKDNLAWLLSSTYNHNIICRSETKCSLIPLSSKASQVTTSGLKWNLVKQSLNFGELISTSNVSLDNKVCVETSNPLIFIVDINP", "length": 337 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q561S0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRLLRLVPASASARGLAAGAQRVGRIHTSVHCKLRYGLLASILGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQYSSSTTGDGRPLDIEFSGSCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQKKGDPHEMKVTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYLNYNKGPWLKQDDRTFHNLRMLVQDKREVLNYTTVPVYLPEITIGAHQGSRIYDSFRELPGRKYAPGYNADVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q568T5-1", "protein_name": "Chondrolectin", "gene_name": "chodl", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRATLRILCALTFLVSCSRGARVVSGQTVCQGNPEHPCYKIAYFKDVSSRVAFWEALQACEMDGGSLLSIENTAEQKHIEHLLRELSVSSSTGPASITDGDFWIGLTREEGDNAQEPGAFASCPNLYRWTDGSVSLFRNWYADEPSCGGEACVVMYHQPTALAGPGGPYLYQWNDDRCNMKHNFICKYEPESHLVKVQSDRPGGHDVDLSTEDKEDRRTPPTDEDESPRLIIAGPSSMLLIYVIIPTIPLLLLILVASGTCCFQMLSKSKPRTKTSVNQSTLWISKTPKIDSGMEV", "length": 296 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5HYN5-1", "protein_name": "Cancer/testis antigen family 45 member A1", "gene_name": "CT45A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKAKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETASSPKSQREINADIKRKLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5I0J8-1", "protein_name": "PHD finger protein 11-like", "gene_name": "Phf11l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFEPSSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGATVGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYKLFCQRHAPGGQEPTQVDAAVKASFLKKCLEAGLLTELFEQIQQKMISIHGRFMDDTASESDYEGIKILLFDCGLFKDTLIKFEEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGVLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGDSL", "length": 293 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKDLAIGVIFILQCSMGILRHFILLSYYLMLHYNKHSLKPIDLILMNMFIANFLIIFPKSMLQTVEAFGIKLLFSVFVCKFLLYIERVGRSVSIATVCLLSVFQAITISPRNSCLYGLKVKVPKYISLSIFLCWALYFVVNMILPVYAYIKWSSNNMTYKRTLKYCFSVGHDEFTGSFFTILFVFPEVFLAILIVWSGSSMVVILYRHKQQVQHIYCNYASTRTSPESRATKSIVVLVSVFICFYSISSILYGCIALFCDNSWSLINIANIISLCFPVLGSFVVSHNPDFPRFSLSWIRNTRRV", "length": 306 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNDRMESKDLAVGVIFILQCSMGILRHFTLLSYYLMLHYNKHTLKPIDLILMNMFIANFLLIFSKSVLQTVEIFGMELFFNVFVCKFLLYIERVGRSVSVATVCLLSVFQAITISPRNSCLNGLKVKVPKYINLSIFFCWPLYFVINMILPVYGCIKWNSNNMTYKRSVKYCFSIGHDELTSSIFTILFVFPEVFLAILIVLSGSSMVVTLYRHKQQVQHIYCNYACTRTSPESRATKSIVVLVSVFICFYSVSSILYGCIALFCDDSWWLINIAHIISLCFPIFGSFLVSHNPALSRFSLSWIKNTRRV", "length": 311 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3F0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "LOC100911184", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFWNLAIRIIFLSQIIIGILGNVSLLFYYLVLYYREFTLKSTELILMHLMVANIIIIFSAGVPQTMTIWGMKQFLNDFGCKLLLYIHAVGRSVSICTTCLLSVFQAMTIRPQKFCGNDHKVTMERYLGCFISFLWVLYFLVNFIFLVYTYIKKNSNNETRKRDFGYCSTVGSDKISDSLYATLVMCPEVFFSVLIAWSSGSMIVILYRHKQKVKYIYSTHVSRRDYPESRATQNILAQMFTFLAFYTLSSTLRGSIALLSNHSWWLMNINHFTSLCFPSFGPFVLMSHYSIVSRFILFWLRKNCSNFLL", "length": 310 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JQC4-1", "protein_name": "Cancer/testis antigen 47A", "gene_name": "CT47A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARNLWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT", "length": 288 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5QNN9-1", "protein_name": "Trace amine associated receptor 12e", "gene_name": "taar12e", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSLNETQTENILLCYPLLSNSCPKLHRLAVVQVGLYVFLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGLLVMPYSMVRSVEGCWYLGDVVCKVHSSLDMTFCISSLLHLGLISVDRYWAICDPLRYRLRVTNITVTVFIVFIWLFSFVYSFYVVFSGVNTVGLETFIMQVYCVGSCVLYFNKQWGLICPILVFFLPGAIMSSLYMKIFHVARKHAKVMSERVTGGLKSQSSAQRERKAAKILAIVMGVFLFCWLPFFTVNALDPFFNFFTPADIFDAVIWFAYLNSTCNPLIYGFFYPCFQKAFKILIFTYICGVRNLDTFA", "length": 337 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP0-1", "protein_name": "Trace amine associated receptor 12g", "gene_name": "taar12g", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSNESENIQLCYPLLSNSCPKLHRLAVVQVGLYICLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGSLVMPNSMVRSVEGCWYLGDVVCKVHSSLDMTLCISSLLHLGLISVDRYLAICDPLRYRIRVTNTTVTVFTVFIWLFSVVYSFYVKFSGITAVGLEMLILQTYCVGRCVVFFNKQWGLICPVLAFFLPGAIMSSLYMKIFHVARKQAKVISERVTGGLKSQSSAQRERKAAKTLAIVMGVFLFCWMPFFTLTALDPFFNFLSSADVFDALFWFAYLNSACNPLIYGFFYPCFQKAFKILIFTYICGVKKANTLTFE", "length": 336 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5R1F6-1", "protein_name": "T cell receptor alpha variable 5N-4", "gene_name": "Trav5d-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTYAPTLFMFLWLQLDGMSQGEQVEQLPSILRVQEGSSASINCTYENSASNYFPWYKQEPGENPKLIIDIRSNMERKQTQGLIVLLDKKAKRFSLHITDTQPGDSAMYFCAAS", "length": 114 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5RKI7-1", "protein_name": "Solute carrier family 7 member 13", "gene_name": "Slc7a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMDIEKKIYLKRQLGYFWGTNFLIINIIGAGIFVSPKGVLQYSSMNVGVSLCVWVFCAVLSMTSTLCAAEIGITFPYTVAHYYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALLLAEYGIQPFYPSCSAPAVPKKCLALAMLWIVGILNSRGVKELSWLQTVSMVLKMGILSFISLSGLFLLVTGRKENVRRLQNAFDAEFPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEPSKTIPRCIFTALPLVTVVYLLANLSYLTVLSPQELLSSDAVALTWTDRVIPQLTWSVPFAISASLFSNLVTSVFETSRTSYIASRNGQLPLLCSTLNVHSSPFIAVLLDVSMGSIAIVLTNLIELINYLFFVFSIWTVLSVIGILKLRYQEPNLHRPYKVFSPFLFITAAISLSMVLIPLIKSPKMQYIYVFLFFLGGLLFYVPLIHFKLKLIWFQKLTCYLQLLFNICIPDVSDEHVAEEES", "length": 479 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5XHX8-1", "protein_name": "Sperm microtubule associated protein 2", "gene_name": "Spmap2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGELGEHRSRSSLLSIPVLDTKTSGGSEYRESDGSLDLQSTLFEDHWLQSSQATTERNTDDPEEEIPPEEMVGEELPEVSNLEDSLRRDLEVEVVGMSHLSINERTTPTTSSAKCRKKKNHRLLELAKPKFNWQCLKDRTGRCCKGHVWISPRKTNLQFCLYWPSVYWTERFIEDTTLTITVPEVSRRVEELSRPKRFYQEYYNNNRTTPIWPIPRSTLEYQASNRLKRLATPKIRNNIWSINMSEVSQVSRAAQMAVPTPRTLRLAKPRAPATLLEEWDPMPKPKPYVSDYNRLLQLATPKALSEKCVPDRSPQWEVLNVTKNAVASSRIISLAQPKIRKDLNEGYNPYYISPASLVAQASPRIYELAVPKHITKKV", "length": 378 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q63550-1", "protein_name": "BPI fold containing family A, member 2F", "gene_name": "Bpifa2f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQLGSLVVLCGLLIGTSGSLFDIFQNPELDVESVWSEINYRIRYALETMDLDMLADYLSKRGIELKIKDLRILNLNHEVSPNGDEVTLKMPMALNASLSLPARDLTTDVSISMEAITSFAIEKDPKTGRRVLNMQRCSLNTDNTSISLLNRKSNFVNLALDSALYLIKRGLTLPVRRQLCPVLQLIISNTFHPDEISNPQTAIST", "length": 206 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q64583-1", "protein_name": "Cytochrome P450 2B15", "gene_name": "Cyp2b15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVLLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFINTYLLRMEKEKSNHHTEFHHQNLVISVLSLFFTGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSEAFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPVAPEDIDLSPINSGISKIPSPYQIHFLSRCVG", "length": 495 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q66X01-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9C", "gene_name": "Nlrp9c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVDSSSYGLLQYFQKLSDEEFQRFKELLQKEQEKFKLKPLSWTKIKNTSKEDLVTQLYTHYPRQVWDMVLNLFLQVNRKDLSTMAQIERRDKQNKYKEFMKNLFQYIWTSETNTYMPDRSYNTIIDRQYKALLDIFDSESDPATAVVLGTRGKGKTVFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSKLPECSETLDDILSNPKRILFVLDGFDYLKFDLELRTNLCNDWRKRLPTQNVLSSLLQKIMLPECSLLLELGESSCSKIIPLLQNPREIIMSGLSEQSIYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNPSMLWMICSSLMWGHYSREEVISSSESTSAIHTIFIMSAFKSIFGLGSSKYKRFKLKTLCTLAVEGMWKQVYVFDSEDLRRNKISESDKTVWLKMKFLQIQGNNIMFYHSTLQWYFATLFYFLKQDKDTYHPVIGSLPQLLGEIYAHKQNQWTHAQTFFFGIATKHVITLLKPCFGNISFKTIRQEIIRYLKSLSQPECNEKLVHPKKLFFCLIENQEERFVSQVMNLFEEITVDISDSDDLGAAEYSLLRASKLKNLHLHIQKKVFSEIHDPEYGSLENFKLDQKFSAINWTMLSILFCNLHVLDLGSCHFNKKVIEVLCNSLSPTPNMPLTVFKLQRLLCSFMTNFGDGSLFCTFLQIPQLKYLNLYGTDLSNDVVEMLCSALKCSTCRVEELLLGKCDISSEACGIMATFLINSKVKHLSLVENPLKNKGVMFLCKMLKDPSCVLESLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDIGVNLLCEALKYPNCTLKELWLPGCYLTSECCEEISAVLTCNKNLKTLKLGNNNIQDTGVKRLCEALCHPKCKVQCLGLDMCELSNDCCEDLALALITCNTLKSLNLDWNALHHSGLVMLCEALNHKKCKLNMLGLDKSSFSEESQTFLQAVEKKNNNLNVLHFPWVEDELKKRGVRLVWNSKN", "length": 1004 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q675C0-1", "protein_name": "Taste receptor type 2 member 102", "gene_name": "Tas2r102", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPVIYSFATLLIHVEFIFGNLSNGFIVLSNFWDWVIKRKLSTIDKILLTLAISRITLIWEIYTWFTSVYGPSSFAIGMKLQILYFTWILSSHFSLWFATALSIFYLLRIANCSWKIFLYLKWRLKQVIVGMLLASLVFLPGILTQRTLEERPYRYGGNTSEDSMETDFARFTELILFNLTIFSVIPFSLASISFLLLIFSLWKHLRKMQLSSRGHGDPSTKAHTNALRIMVSFLLLYSIYFLSLLLSWIAQKHHSKLVDIIGIITGLMYPSAHSFILILGNSKLMQTSLWILSHLRCRLKGENILNPSGNQVTSCYIFCIANKSVS", "length": 327 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q68FP3-1", "protein_name": "C-C motif chemokine 6", "gene_name": "Ccl6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRHSKTAISFFILVAVLGSQAGLIQDTVKEDRPFNPTIIHQGFQDSSDCCFSYASQIPCSRFIYYFPTSGGCTKPGIIFVTRKRKRVCANPSDQRVQTCISTLKLGPRSGNSAIA", "length": 115 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6EKJ0-1", "protein_name": "General transcription factor II-I repeat domain-containing protein 2B", "gene_name": "GTF2IRD2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRKIDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYTERMRDEKLHELKKGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLRVEKSLKKFCINWSRLVSVASTGTPAMVDANNGLVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT", "length": 949 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NXT2-1", "protein_name": "Histone H3.3C", "gene_name": "H3-5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 135 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P3W6-1", "protein_name": "NBPF family member NBPF10", "gene_name": "NBPF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRSLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGSYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSQDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAFDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEENHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELCDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDKIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEREVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", "length": 3795 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6UGQ3-1", "protein_name": "Secretoglobin family 2B member 2", "gene_name": "Scgb2b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLALLVTGELGFQRTEACIPFFGVYLGILSGNRIGLHTELAPFDPTVEEKEAFEKIQDCYEEEGLKAKTEDMKLMTTILFSSECRSYYTKEVLKNILVKFSKKLTHGS", "length": 114 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6YCH2-1", "protein_name": "TD and POZ domain-containing protein 4", "gene_name": "Tdpoz4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGELEAKSRGDTQSHEQKLCYRWTISNFSFFVEETEEYITSLVFSLEDNDKMTWCLRVYPTGVDEKNKDYVSLYLILLSCEKGSVWAKFEVCILNAKGEKCNTERIPSFSRIQPHQPFGFEKFITRDSFLSPAQVLTPDDKFTLLCKVSVLQDSFSISGQNPRPAIKVTRCTLENDVGELWENPLFTDCSLLVAGHEFRAHKAILAARSPVFRAMFEHEMEERLTNCVEIHDLDPQVFKEMMGFIYTGKVPHLHSHSMACDLLAAADRYGLEDLMVMCEDALCRSLSVENAAHTLIVADLHSTEHLKTQALDFIIVYASEVSKTSGWMSMVESHPRLVAEAFHSLASAQRVFWALPFKQLKWSLRPTQL", "length": 370 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZMA2-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNCTQSPGFILLGLSSDPEKWQLFFSIFLALYLLGFLGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKMLEALWTGDGSISFSGCLTQMCLFGVFADMDNLLLAVMAIDRYAAICQPLLYPLLMTPCRCGVLACGSWGIAHCASLVYTLLLSQLSFHSNQEIPHFFCDSRPLLWLSCSDTHLNEFLMMVLSALLGISALLCIVSSYGCIFCAVARVPSAKGRRKALATCSSHLSVVLLFYSTVFATYLKPPSTSHSSGEVVAAVMYTLITPTLNPFIYSLRNKDVKNSLKKLLNMEKPLD", "length": 309 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q70YC5-1", "protein_name": "Protein ZNF365", "gene_name": "ZNF365", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLTKCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKAHFHPKGRNHLKKAKDDRASMQPAKAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII", "length": 407 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q71LE2-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q7KR10-1", "protein_name": "Probable cytochrome P450 12d1 distal, mitochondrial", "gene_name": "Cyp12d1-d", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNTLSSARSVAIYVGPVRSSRSASVLAHEQAKSSITEEHKTYDEIPRPNKFKFMRAFMPGGEFQNASITEYTSAMRKRYGDIYVMPGMFGRKDWVTTFNTKDIEMVFRNEGIWPRRDGLDSIVYFREHVRPDVYGEVQGLVASQNEAWGKLRSAINPIFMQPRGLRMYYEPLSNINNEFIERIKEIRDPKTLEVPEDFTDEISRLVFESLGLVAFDRQMGLIRKNRDNSDALTLFQTSRDIFRLTFKLDIQPSMWKIISTPTYRKMKRTLNDSLNVSQKMLKENQDALEKRRQAGEKINSNSMLERLMEIDPKVAVIMSLDILFAGVDATATLLSAVLLCLSKHPDKQAKLREELLSIMPTKDSLLNEENMKDMPYLRAVIKETLRYYPNGFGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVEFNRDASRPFKTMFLMEPAITFPFKFTDIEQ", "length": 521 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7M715-1", "protein_name": "Taste receptor type 2 member 117", "gene_name": "Tas2r117", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKHFWKILSVISQSTLSVILIVELVIGIIGNGFMVLVHCMDWVKKKKMSLVNQILTALSISRIFQLCLLFISLVINFSYTDLTTSSRMIQVMYNAWILANHFSIWIATCLTVLYFLKIANFSNSFFLYLKWRVEKVVSVTLLVSLLLLILNILLTNLETDMWTNEYQRNISCSFSSHYYAKCHRQVLRLHIIFLSVPVVLSLSTFLLLIFSLWTHHKRMQQHVQGGRDARTTAHFKALQTVIAFFLLYSIFILSVLIQIWKYELLKKNLFVVFCEVVYIAFPTFHSYILIVGDMKLRQACLPLCIIAAEIQTTLCRNFRSLKYFRLCCIF", "length": 330 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7M719-1", "protein_name": "Taste receptor type 2", "gene_name": "Tas2r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCAVLRSILTIIFILEFFIGNLGNGFIALVQCMDLRKRRTFPSADHFLTALAISRLALIWVLFLDSFLFIQSPLLMTRNTLRLIQTAWNISNHFSIWFATSLSIFYLFKIAIFSNYLFFYLKRRVKRVVLVILLLSMILLFFNIFLEIKHIDVWIYGTKRNITNGLSSNSFSEFSRLILIPSLMFTLVPFGVSLIAFLLLIFSLMKHVRKMQYYTKGCKDVRTMAHTTALQTVVAFLLLYTTFFLSLVVEVSTLEMDESLMLLFAKVTIMIFPSIHSCIFILKHNKLRQDLLSVLKWLQYWCKREKTLDS", "length": 310 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTZ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 1", "gene_name": "USP17L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHCKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TMR7-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "Slc16a6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQKNSKLCSRANVYTQVPDGGWGWVVAASFFFIEVFTYGVIKSFGVFFNDLMDSFDESNSKISWIISICVFIMTFTAPLSTILTNRFGHRLVVMGGGLLISVGMIAASFSQRVYQMYISIGIVSGLGYCFSFLPTVTILSQYFDKRRSMVTAVASTGECFAMFAFAPAITALKEHIGWRYSLLFVGLLQLNVMVCGALLRPIIIKGPGSPKAIPLEPRREVQYMLENEKTRTSIDSIDSGVELTTSPKNVPSEAKREQEVRVEQQQTLVVGPKHSQKRAPLLDFSILKDRSFICYTLFGLFATLGFFAPSLYIIPLGISLGIHPDRAAFLLSTMAIAEVFGRIGMGLVLNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMLCSVFFGSMVGTIGGTHIPLLAEDDVVGIEKMSSAAGVYVFIQSISGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKKGLCQNPHSGENQTDGHRGKALQDIPEDFLEMDLGKCEPRAHMKMDPV", "length": 522 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TN50-1", "protein_name": "Mas-related G protein-coupled receptor member B8", "gene_name": "Mrgprb8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQNSIP", "length": 328 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TPX8-1", "protein_name": "Oogenesin-2", "gene_name": "Oog2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNFYSPPTLMELARQCLLRDEYLAISALKDLPNMMFPVMFKEAFIDGHTKILTAMIPVWPFPYLSVGTMLKNLNLDTLKAVLEEIDILISKPVFSSRCKLREITLSHDLVVVWAGSHEVEGLPEFMEQEKPVENSPGYGTKNKLKVTTELQFMEGHLDECSTYLLQWAYQREDSIHLHCRKLKIYGLTKAAVIEMFKIVHAEYIEDLELSCLCLEYLDFLNPYLKQMSNLLSLTLDEIIYTLNIDDYRNLNEEKVITVISHLPTFHHLQELYVHGVIFIECLRCLKKPLEVLSFTDCDLSQSDLDYLPYCLNIFELRSLHLTDVRLSNLLLEPLGFLLERVRHTLKSLQLMSCEMGETHFNALLPALSQCYQLTVVNFYGNELSLLFLKKLLHHTAKLSQLADELYPAPQECYDNRDVVLSHRLENFCSELLDILRAIREPKKVTFGTIKCSKCGGSYVYDLETQCCFFEKNPPWA", "length": 476 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQY5-1", "protein_name": "Olfactory receptor", "gene_name": "Or4k38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSNRTVSSEFIFQGLCSSRQLEIFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFIDFCLSSVTTPKLTIDLLKENKTISFVGYMRQIVCVHFFAGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQKCIWLVVISWIVGFVHAISQMLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATTCFILLLISYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVSITWVDKFLAVFYSVITPLLNPAIYTLRNKDIKNAIKKLISHK", "length": 305 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TR72-1", "protein_name": "Olfactory receptor", "gene_name": "Or8k25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKYNLTIVTEFILVGITNHHEFQVPLFGLYLIIYLTSLVDNLGMIILTIVDSRLQTPMYFFLRHLATTDLGYSTAVGPKMLRNFLVDQNIISFYACAIQSSFFGMFIVCEFFILSAMSYDRYVAICKPLLYTVIMSQKACWILVTIPYLYSIIVSLLVNIKIFTLSFCGYNVISHFYCDALPLLTLACSNTHEIEAIILIFSAFNLLSSLLIVIGSYLLILMAILRINSAEGKWKAFSTCGSHLTVVIVFYGTLIFMYLQPTFTHSIDTGKVISIFYTQVIPMLNPLTYSLRNKDVKDVLKKPMEKVHNLFS", "length": 313 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSF0-1", "protein_name": "Desmoglein-1-gamma", "gene_name": "Dsg1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFTINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEENTLHSQLLQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAVKNLQLCIGVRNVAEFHQSIISQYRLTVTLITVTVLNVVKGCVFQPGSKTFIVDSRMEANHTVGEFLATDCETGQATNKFKNVRYRYVMGNNPENLLVVDSGIITLRNRVTMEQYERLNKRYEGTVLSIHDSLQRTCTGTIIMVLCGFWTTTEHPTTSTEKPVTLSITPNVDNVHFGPAGIGLLIMGFLVLGLVPFLLISCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPGGITTICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICPQHMEQLASGHPSISPHFGKTTVISENAYPSGPGVQHPMLIPDPLGYGNITVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVGPISGADLHGMLEIPALRDGTNVIVTERVIAPGSSLPNSLTIPNPRETSNVVVTERVIQPTSGMIGNLSIPP", "length": 911 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q803M0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3B", "gene_name": "ppp1r3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPIELAMSLYLSSDEFLNPRASKYSRPLQPCLNQCKSSKLSFSSLKEQSEFNGVSRALMIPGRAKKHVSFADHKGLALTVVKIFSEFDDPIDIPDNIDNFFTSSLTVSEGKDKLTLDFDQPSADYLKFRQRIENDHVCLEHCMLKEKSIMGTVKVKNISFEKSVKLRITFNTWKNHTDVECQYVKDTYTGSNRDTFSFEASLPEQVPSHERIEFAICYEVNGDTLWDNNQGKNYRIIQSALRKSSNESNGGHQQYSQSDWDIHFDRYGSPRCSRGIFPHWPSYVGYEDIGPYY", "length": 293 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80SW5-1", "protein_name": "Embryonic testis differentiation protein", "gene_name": "Etd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEKNPEAVPRPPEQNTELVPPKKSKSKKPANILIYLIDRHLGRPRNDMDLFEWVWTLK", "length": 59 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VJ6-1", "protein_name": "Zinc finger and SCAN domain containing protein 4C", "gene_name": "Zscan4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSENDPREVPGLQSRQEQPISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VT8-1", "protein_name": "S100 calcium-binding protein, ventral prostate", "gene_name": "S100vp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSTEQEIMELLMILQEFSVKKIDKLDVQEVKRLFREELPNFLKAMDEATKNKILNDKGKEMPFDEIWDMIGRMALEYRKKNSNALKD", "length": 92 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80XZ1-1", "protein_name": "Polypyrimidine tract-binding protein", "gene_name": "Smptb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRNSPPAAEGNGSKRFKGDSWGTRDPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYTWMPPVLRGQPVHIQFAHYRELKVSSSPSQEISLSQAGDSREATASSLVAVPGQAAASGQTAVPSQLGAQPCLPPEDSYQAGTVALAPPASAVDTELVVAWQSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASALPAPAMSSASPYASIALPHTFAIPQAAGLANPEVFKTLHPQAIQEVAMASSSSSSSTAAAAVGAAEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYGKALCILLSKHQSVKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSRMTI", "length": 588 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q810J1-1", "protein_name": "Pregnancy-specific glycoprotein 22", "gene_name": "Psg22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVSSELLSNGWTSWQRVLLTASLLTCWLLPITAGVTIESVPPKLVEGENVLLRVDNLPENLRVFVWYRGVTDMSLGIALYSLDYSTSVTGPKHSGRETLYRNGSLWIQNVTREDTGYYTLQTISKNGKVVSNTSIFLQVNSSLFICGRPSPPALLTIESVPASVAEGGSVLLLVHSLPDNLQSLLWYKGLTVFNKVEIARHRTVKNSSEMGPAYSGREIVYSNGSLLLQNVTWEDTGFYTLQIVNRYWKMELAHIYLQVDTSLSSCCDDFNSVQLRINPVPPHAAEGERVLLQVHNLPEDVQTFLWYKGVYSTQSFKITEYSIVTESLINGYAHSGREILFINGSLLLQDVTEKDSGFYTLVTIDSNVKVETAHVQVNVNKLVTQPVMRVTDSTVRIQGSVVFTCFSDNTGVSIRWLFNNQNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVRLTVMNE", "length": 475 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q863C3-1", "protein_name": "Gastrin-releasing peptide", "gene_name": "GRP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGREVPLVLLALVLCLAPRGWAAPVTAGRGGALAKMYTRGNHWAVGHLMGKKSVAESPQLHEEESLKEQLREYAQWEEATRNLLSLLQAKGARGHQMPPWEPLSIHQPAWDSEDVSNFKDTGPQHEGRNPQLN", "length": 134 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q869X2-1", "protein_name": "Probable polyketide synthase 17", "gene_name": "pks17", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTFNNIKDENNDDIAIIGMGFRFPGGGNNPYQFWNQLSNKMDGISKIPTEKWSRSFYEQKYINNEYGGVLKDEEWKNFDPLFFGISPKEAPIIDPQQRLLMTTLWEAFEDANIKPSTFRGSDTAVFIGMMNTDYQRCQFRDISYVNPYITPGTAGSFISNRLSFSFDLRGPSMTLDTACSSSLNAVYLGCQAIANGDSKMAIVGGVNGIFDPCFSMTFSGLNMLGHKGQCRSFDAGADGYIRSEGGGVCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNIIQPSMKAQGENIEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFEDWNIRVVTDEIQFPINKLINMGINCFGLSGSNCHMILSEAPINYDELLKTTNNNSTSSSSNDDKKEYLIPFSANCNISLDKYIEKLISNQSIYKDTILFKDFVKHQTISKSNLIKRKVITASDWDDFLNKRNETTSTSSLTSTISAPASSTPVIYVFTGQGPQWRDMGKALYETESVFKDAIDHCDKLLANYFGYSILQKLLSLESEDSPEIHHPILAQPSIFLIQVGLVALYKSFGISPSIVVGHSFGEIPSALFSDVISLETAVKIVYYRGLAQNLTMGTGRLLSIGIGADAYLEKCALLYPEIEIACYNDPNSIVITGSEQDLLGAKSTLSAEGVFCAFLGTPCSFHSSKQEMIKEKIFKDLSDLPESNVPCVPFFSTITGSQLSHKGFYNVQYIYDNLRMPVEFTKAISNIFNFIEENESYKNAIFLEIGPHPTLGFYIPKCKPSNSTITSKPIIVSPLHKKKEELTQFKLAISTLYCNGVEIDFASGQQLLPTSSSSGGGDISSFKESTNKLPRYQWDFEEYWDEPNQSKMVKRGPSNNLLGHDQFAGNTLMELFIDIDKSAHQYLKGHKIKGKYLFPGSGYIDNILRQFNGQDITIFNLEFSNPFFLKDGVQHHLQTSITPTTKGEFKVEFFIKDNRNSTKWTKTSNGRIGLFKHNPKNNKLDIEKLKSQCSFTTLTKSEVYNKLLLLSLPYGPTFQRVESCSIGDGCSFFKLSMSPCSEFDKDFLNPSIIDCAFHGLLVLSEGPQEIVFDRLQDMKFYSSNVPSTRPQFIYAFAKFDKIEGNSTHGSLNIILEDGTLLISIKNVKCTSLIRLKKQSIKYPSQNVYSHHWQSKDSPLTLIENQLIEEKSSESKINFEKLLNDKLFNYYLIRLLNQSIKSEFIEFDYKTSTVDTLDIGSKNAKLLEKIQSILNPIDSLDQSIDITSLKQAIIVKSSFKNEIKLVEKSIKRIVSLLKGGESEHFSPSNPSSPNDTPRNNSNNCSSKNNAASSDDADDDTNNEETINQLNNEPFNFSNSQFISNQNQLISKTIVNSFDRLINSIEIGEKKLIKIIDLSSIYQNYQLSKLLLLQLNQLLINLSNNNNIEIEYTIPSNTKNIDSITEETKSISNVLNIKYRSFDLQDDLESNGYLNSNYDLIITSLLLVSTNSIDSNEVLSKLYKLLLPKGQLILMEPPKGVLSFNLLFANDFKQSLEIKSEQEIKSLIIYCGFTKIETNLNTKDDEEQQQPPPPSILIVQAEKRDIESMSLTFSSDPKSLNSSYSNCIFIVSKEQKENPTSYIQEYFDITEFFCQNATIIEADDSELLTKTIESGVGKNDIIFFLVSLEELTIENYKQVTMQYTLVNQILLRNNLSTRFALLTYDSQNGGKNYLGSSLIGTFRYFLEFRSLNIFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPSNNYEKNTNNLFLYSNSNLDFSFQSKEKLLHGCVEIKVMSTGINYKDSLFYRGLLPQEVFSKGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSHVTTHQNKIVLKPENISFNEAAAVCVVYATSYYSIFHIGAFIADKESILVHSATGGVGLASLNLLKWKRNQLKKHGNSEISNDASIYATVGSKEKIDYLQEKYGDLITAIYNSRDTEYCDEIKQQSAQGGVDLILNTLSGDYLSSNFRSLSQVGRIMDLSVTQLVENDSLDFSNFKYHVGYNTIDLDRATKYNSKIIRDILTEVFDAISDGSLENIPVKVFPAIQVKTAIEYINERVHIGKIVVDFENFEQDILKPALQEKENPIQLNKVKKLEHTCDTLNNTILITGQTGIAVHILKWIISGSVLNSNKSQQQVTDFIILSRSSLKWELENLINQTKHKYGDRFRFHYKSVNIADLNSTRTAIDQVYSSCKNVSPIKSVLHFATVYEYILPENITQTVIDNTHNPKAVGAINLHNLSIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGGLDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLSSFNIDNLLSSAPQMKRKMDHHLTNYKTSSASSDDSLGDSGSTQAKVISTISELLSIHPSKLNLDTRLKDYGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTSKQTATKKT", "length": 2604 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q869Z5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPHVYHKIDFSKNEQFDPEFLKFSPNNKIPAIVDNTVEPNGISVFESAAILMYLSEKHQFTDLYADFKTDPALHAKHLEFLFFQMSGVGPMTGQLGWFLRQPEPKNTQAIERYSEEVKRLYRVLDKILSTNTWVAGEQYSIADISLLGWALYFLKGYYDDHITREQFPNVYRWLDLAAKRPAIIKVLETIQPKQK", "length": 227 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AE3-1", "protein_name": "Probable polyketide synthase 9/36", "gene_name": "pks9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLKNINLKEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFKEWKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHTNKHQDSVLKNAIAQSTSAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVDIIKAYSILSMLSKTHGKCKTFDESGDGFTRGECVGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNFLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTTMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNEIVFIEIAPHPTLLFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQSINLPLYQWDEELYFTQAQTLEQHRKEGPPIDHLGTSNSYNSPFNNSYRTSIDIKNKPFLYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPPKYNIKEIIENKCNLSKLTKNELYTHIKSKTGLNYTGVFQGVTECYIGGDCTLSVVSLESQTNSFLNIPILDTCLHGMIGLSNDQCQIVFDKAIGFKYYSSNIPANLKDYKDSVYVYSHLKSKSVDSFFGSIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNEVIIKSSRIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCRYLRKKNQMISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIIALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGFNVIYRPLKIDESLIETQSINPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCSMSQQSWCQLLKTCNFKDIAMSKECIFVGIVIHAQKPPISLLNSQPKRDNIIIYGGGNPIFVENIKLYSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNFKQITLEYIEINRKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLNTLDFDYDSTQNYINSNNKDMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNYKKIQIKPSNLSHNEASSIPIDYLTSFMSLFNIGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFNSNLFVTVNSYETKRYLQDNYGDFITGIYSNTDKSYVTEINKKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLAKYGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFELSLIQKNKIHKCLYEISNAFENGELKTIPIKEFTNLNIKDAIKYITNNKIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILVTGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINETKLSNNNIKFHFKSVDIGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYVCANALLDSFSKYRESLGLPSTCICLGAIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNAGKFTNSMLSNFKPSKFKNNQQTSLFLKFDYLMNLKNNSEETKIENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTISTSMKMILNSLMKNNQNIDDNNKDLPSNRIDYWKNEMKFEESIKPISNEIQSRNNSEKIILLTGTTGFLGGFLLFNMVRLDSCKLIYCLIRNKSKSNNPLDEIINNLKYHQLYEKLNQSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKKYNIPSILIRPPSIFLNPETGIGHISDFSLLSIQSCYELGYYPNQFENDFILINTITWLSNNITNIIMNDNCWTDSKMNIYNVHGKQIQSSLIIKPLEKHFNCKHINTNDWIDMVNNSNKKSCIKLKSFHSLDIILKSENNRYKPNENQSISLSTKSLLESMGSYNTDLEITDKMIISHINQIFNLNETI", "length": 2931 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AF8-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSKFSIKENKPKKVKSNSSKGFNNNEINSTNNNNNNNNNNNNNNNDSDNFINNNDSNNNNNFNNNNNNNSNNINNKTEDSNDISLLINQFIGSSPAPSTCSGSDKFSIKPKKIVTPSKRKNSTSGSDIIDFNNCNNNNNSKSNSDSNNNKYNNSNSNNNSCNNTNNGNERKMKGYDYGNNNSNNNYSSSSRDYNSNNNSSPRDYNNNNNNNNNNNNNNNNNSNNNSPRDYNNSRDYNNNNTNNNSSPRDSNSNNNRNSSSRDFSNNNSSPRDYNNSRNSNNSFLNNNNNNNNNSNNSNDNSPRDYNYSSSNSSPRDYNNNNDTFSKKRNNVGNSILEIKSNPTSPRIKPIMVWPRSSPRIVNKLPPVQSLVDLTEIEMIDDNNNNNNNNNNNNNNNNNNNNNNNSNNNNNKSGSNNNFSDSDSDKDNYNNNNNTNNNSFNSDSDNYNNSNNNNSNSNSNSNSNSNSNSNNNNNNNNNSNNNNNNNNNNNSNNSNKSNNNFSNIKILEKRRKSINEISDNLTTRNIEEIDSKMAHEFEHPFLEKLIFAGQRPPFVECDDYFLKRYKNQFQYYLDISMKSIINTRDIGEGDDDDEINSVPFKCTLCSYEYDEENNNENTNGFIDEADKIYNRSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNNNNNNNFYDKKYFKNNYFQHLLSKHLNQIKAKGIQDTNVYNDEANIPLGSKKCDHLECSEIILKNEFTKHIKKLHHHHKDEDIDICPRCKILKKSIQKRIVKFSKKKQEKDDDNNSKPVSNKVATISHNPSPNNIDKDINNNNNNKNNKNNTNNLENDNNDNSSNNNYLENEEEPEIVFQDIKPNNNNNNNNNNNNNDDNNNDNNDNNDNENNNDNNNDNENSNNNNNNS", "length": 901 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86BK9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "Dmel\\CG32971", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQELNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAMHAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV", "length": 145 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86IJ5-1", "protein_name": "Uncharacterized protein DDB_G0272718", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPPHGHHHHHHGHHGHHEHITITPVYAPPQVVQPIYAPPPVVQPVYVQPPVVYPQATIVLETGHHHGHHHHHGHHGHHDHHHHGHHGHH", "length": 89 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86IV6-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFFEKKNNNNNNSSNNNNNNNNNKNNNNKNLDKNNSSDRNNNNNGDKNNLKPTQKSLIDLWFQVDDEDEEYELSSLSNDGGSSFNSFKVNNRDTSIGSDIYSKTITPSSLALSTSSLISSTLTPPTQSPPFSKKNEKTSSFLNSPSSQKSKSNNSNVKEKLSPQYSSSSQLSDFFKKKKRPLLDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTISSLNTNSNNNSSGSSNGSSSSSSGGGNKSSNNKKQKVSQSTSSTSLKEKQSQQSILSYLNPTPSLPTPIFDKPIERSDSNLATSSFSKLNFDDIPLDDEELSQKINTPSPKLILKNTFSSTPTQKSPSLSSTPPNKIKITDKKLPNSSSSSSSPPPSSAKSKLSHRSQSSPLSPLITNLNQNKSNEFDDINFNFNIPSPLKEINNKPNIKSNSKETLTPLTQIFHSSSPPPSIIIESSPSVCFSPTPTKNQSPTLSNLSPTFSFLSDTSPVKSPSQLFEFTFDDPLSPKLISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTFISKNNLINLFNEQSNQENVSTTTTTTTTTTTSTSTNNNNNNRYERVLIINVFYEVTQIFNNSNDKIHKKTLSGFSESIGESREIQLLDEWIYTPVRPGDIVNVIGEFDDNGEIIINNIQNLLILHPDILITGTELGGSLTCTRRSVLKEQIRVGNSNSSTVPIFGSIVHEIFQECLKNNRFHLDDINTFKQEIIGKSTFQLGLSSLGETQDTALNHLENWLPTIDKFAKTFILPSSSSSSASSLKKNLIEINSEKWHLSISKILEIEENIWSLMYGLKGKIDSSLEIKLVKQQQDEKQSKQSKQSKKKKQQTTSPNNNNNNNNNNNNNNNNNNNNNNNNNNGPTTCYLNVPFEIKTGKPYQIPYISHSSQVLIYTLLMNDRYDQDIEMGILYYLKSQEFKSVGLNYGLLHPILFERNQIRSLIVSRNLLAYFLNLNSQPLLKPNPILPEMLRDYHSCTKCYSIDPCVLYHKAIENGDQFTSSLGDLFLEKTNHLSSIHINYLKNWNKIISLEYSIKNNKRKLIWNKSRKFGEKNNSCIGELILISEEYSEITETFSYRFRVNPDKLLNSSISEGDYLLISVEDKYYGMGSGQLSNIINDIITITCREKLSEPPSLLSDYTTPNCNNNDPSYFGNYRNKPLIYIEYEDADQQQQQQQQQQQQQQQQQQQQQQQSQKQQKQKQPNFTQLRGLNNYVNNSKLTPFKWRVDIDEQLSGLSIVKSNLFNLFLKENQKLRSLIVDLEAPIFDKLEQENYWKSIDFQNDYPLLNIDQRNAIIKTLSAKDYSLIHGMPGTGKTTLVISLIHILWRLGKKVLITSFTHTSLDHLLLKFNKQYPNIEMLRVASSLNQIDPSLHRFTLEKQSFGNITQSKQYLERQQLVATSCLGINHQCLLKMQFDYCIIDEASILSQPISMGPILKCKSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCGNQSISNLSLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESSNGDLFYNQTEANIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSILKYLSIENNNNNNNNNNNSNNNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNNNQNYLKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFVGSKSSLSKFPFFLDFFEFLDSKNWIYNLNNKIQF", "length": 1838 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86JI5-1", "protein_name": "Probable polyketide synthase 5", "gene_name": "pks5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDMKLNDIENENFINQMKGVAIVGIGFRIPSGNSENSISSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSDAHHIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHANKHPDLILKNAIGFSPSTLSNRISYCFDIHGPSLSIDTACSSSMNAVTQGYHSILNGTSNMSIVGGVNFVIDVETIKGFSYLNMLSKTHGKCKAFDESGDGFTRGECAGVVVLKKLDDAIRDGNRIYCIINGISSNIDGNGIADKANFYSPSKQSQFNNINLAFKSTNGKISVNDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVVSLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRNNEKSVSMMINNFGVTGSNCCLLISEFKKQDYESYENNIGSINKNILVPFSANSPKSLDQYQSKIKNIINNQFNFIDFANNQIYSKSNYLYQRSVVIANNSNDLVNKILNKKHIQTKNPIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGYSVLEKLRSIGDDDTTSIHDPTIAQPAMCMFSVSLFELYKHWGVNPSFILGHSLGEIPTSYCSGMIDLDTFCYTVYQRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESKKSKVPTFSTVTTNLFNESDPFNSQYVYDNIINPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQKINLPLYQWDDELYFAQTQVLEQHRKEGPPIDHLGLSNSYYSPFKNSYRTFIDIKNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHTIEMPPKYNIEEIIKNKCTLARLTKNEIYTHIKSKTGLNYTAMFQGATECYIGVDCTLSVVSIESQTNSFLNIPILDSVFHGNISLINDQCQIVFDKVHGLKYYSSNIPNDYKDKSVYVYAKLKSKTSDSYSASFTVLLSDGTVVYEIDEAFSKSLIPIKELLKIEYPNDELFSINLQPKDSPIPAPSTFKSLIYENDRFNAEPPMVENLFQYISTIFYKNIINRCPEINIDIIKSLSIDEIISNFSKISKHERLFKYVFETIKENGILNSLEEKDDTYFVFNEVLIKSSRVISKLLFPLENDNDNEDTPQLLFQNGLMDKVYKCRYLKNKNQMIAHIIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIVDTKNKINKIIKGAGITNGLNVIYHPLTIDESLVELQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLIPNGQLLFVEPPYKSIICDSLFGSFEQWWAFTDTDIRKDHCCLSQDGWYKLLKWSNFESIEMSTESKFMGSVIQAQKPSFTSLINQQPKYDNIIIFGNNCPNFIDNIKPFSNFNEFIQIETIQEFDQLINKSTITNDSIIYFIKSINQLSLDNYKQATLEYIEINQKLLQINSLCKHVLIVNDSRKTNYLASSIVGAARYFDEFQQLKLHTLDFDYDSTQNYLISKNNKMVQFINNLIDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFEQQDNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDEIKQYLLNNYGDLITAIYSNTDKGYVSQIKNKLIEQGSNDNGVDLILNTLPSDFMDSNFQLLAINGRIIDLSNDHLNQSEYMKNVNFTLNRGYHNFDLMSQRNSRINRSLLTISKAIENGELKLIPIKEFSNSDINDAIEFIIEENRIDKIVVSHDHEVYQELYAKFSNENDFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQEIINIHSIFHFAFTQIACKVQEINMKHLDISHGAKTMGAINLHNQSIKRNWKLINFVISSSIASLVGSTDQCSYVCANALLDSFSKYRVSLGLPSTSINLGAIESTGFVSKNESISVFLDGSGIIPTPINQVLGLLDLQIQNPGKFTNSMVAKFNPLNFSNNEQINLLLKMDYIFNLHSNGYTKVKESAGSKNVDELFIKKISDLFSIDESKINKDIRLIDYGADSLVIVQLKNWVDQEIGFNLITIQQLQNNTINVSIKIILNFLKKINK", "length": 2512 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KS1-1", "protein_name": "DNA cross-link repair 1 protein", "gene_name": "dclre1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDDEDDINLYITRSKNNENKKTNKNRLIDNNIQKTKTTTAVLTTRTTTTTTTTTASTQLKWDYGDEDDDDYSAPKDIDEEQSSKQFNYQNNQIVVKQDHDDYSAPKDMDEEQSSRQFNYQNDQTLVKQDDDHDDYNEPKDIDSQSLIDEDCDFEFDNSDFFFDDGTTNNNDNNNKNNKNNNNNNNNNNNNNNYNNNNNKNYKRKYYQSYNNSNNINNNNNNNNDKFEKRLSDLKKTGKEEAKKRGYQVRKTPTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIVRKENDGETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDINKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRGPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDSPIKVKNILAHFSDLYEKKKQLTIASFFSAQPVTNFFQSFFKSKSEPIIDEDNKKLIPITTTTTTNINTLTATDTTTTKIKTSNTLIKDEFTDDLIWDCSDDLISDRKLLTQSDNSSALCKIEKEENFNDLSENNNNSNNNNNNNNNNNNNNNNNNNNNNNNNKLIIENDIKEEIIDFDDPVFISQQKWIEKQIYNNNNNSNNNNFTTPTKTNGNLSNNAKLNLTPTQTQTQTPTQNNKKQKTTNVSPTSYNSNNSSQQSGLKRSKSDPNVKKNQLQTSQPPSQSLITSFFQKCASPTSLFSATPPTPSITTTSNQSTKNKNSTTTTSTSTSNNKPFKN", "length": 920 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KX6-1", "protein_name": "TNF receptor-associated factor family protein DDB_G0272348", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFELEDITIEQSSFTNNNSNNNNNNNNNSNSNNNNNNNNNNINNNNNHNNNNKNNSNNKNEINNQLDIPISNLVVDKENISKKYFCTICSDLLVNSFHADKFKAVQCKNGHYTTCLNCWEKHLEKKKNCIQCGVDVESIESLSSNLLVTQKFTTFKIHCPNSFFDTIDFIKDEVNGCKEIIQINELEEHLKECQYGFISCKNCEEFSKLPFQEFTQCPDFRKNTKEQHDLICPYVKISCEYCGDIINKINKESHNANWCQEITIKCLDCHLPFKKKEINQHQKSFCPETIIQCRYSKGGCNAMIRRSKLSQHLTEGDNHHQFISNILNQQDLKINELELKNTEFCLLLNGQNKKITELEILFKELNDSILIQKQQQKQQQQQQQQQQQQQQQQQQQQQSQQQQSQQQQQSQQQQQSQQSQQNNNSNSHFINNNNNNINNVQMSDSPNGGSLPQAVYKNKWVISNYSEQEQQGISKDYIKSPLFKIGNSTFFLKWFPFGKKKLNYCSIFLYKTQDDKSIIVNYYIHLVNNQISDEVYEKRGCQKYDSENGSAGYGSSQFIKRADLLNDANGFLINDSITIEIEIFATEEILPLQS", "length": 595 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BI41-1", "protein_name": "Syncytin-B", "gene_name": "Synb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGFWVLCFVLFPSSLSYPESWMPLVNLTHHILRDTNSSLFSNCWVCLSTQTQRSLAVPAPLSIWTDTPMKLHLTYSVRPFSGSFSISDIERRLRLFRPLTASYSFHNPDRRAIAFLQLVSSTGIFRIITRITSVIYPHKDRFFESAQRPLWGPLFTETVLRSQAPLCISRFFKVSAYATFVGNLSASLCNYTMHISPSTSHENLDLSTTHTFKQAMKRPDAKWKNPLRFSGPPSLIFSKPAYYPCPTDIKHCHTSPATPWMHCPQAPFGTCYNLTLFEPDNSTHPVTMSVNPTHFKVKLQGHRDPYPLSHYQPLTGAALSGQYSVWENEITVQENWDITSNIFSHLLSFSYAFCLNSSGVFFLCGTSTYICLPANWSGVCTLVFQYPDIELLPNNQTVPVPLFASVLSSDSVLRPKRSPHLFPFLAGLGISSALGTGIAGLATSTLYFQQLSKVLSETLEEIAASITTLQNQIDSLAGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGIVRDAARKLQERASELGQHSDSWGQWPDLGRWLPWLTPFLGPLLFLFFLLTFGSCLLNCLTRFVSQRLGSFVQDTAKRHVDSILQNFQYKKLPQDSPDEDTIPT", "length": 618 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BYG0-1", "protein_name": "Tetratricopeptide repeat protein 24", "gene_name": "Ttc24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSSRQYGLSDVLRALEESRKLADADRSTDQGLLGPFYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPSEQATVLQNLGMTHNVLGNYWEAQEFHQKAASLHGSVGQRWEQGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGAAAARLGQHDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQEKIAQARFLPSAPGKLQTSRKAKTSARVQSSAEDAQESQWEGEASEGGHEKKEMEGLVNTATVLGPQRQNRATTHLPSGGPSPSGEEYPFIIAPKKLRVSRSSTWAKEALGRNFQRTRIQSGLCSIM", "length": 334 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1N8-1", "protein_name": "Alpha-defensin 22", "gene_name": "Defa22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKLVLLSALVLLAYQVQTDPIQNTDEETNTEEQPGEEDQAVSVSFGGQEGSALHEKLSRDLICLCRKRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1P2-1", "protein_name": "Alpha-defensin 21", "gene_name": "Defa21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALILLAYQVQTDPIQNTDEETNTEEQPGEDDQAVSVSFGGQEGSALHEKLSRDLICLCRNRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5Y2-1", "protein_name": "Mitochondrial sheath formation-associated protein", "gene_name": "Misfa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVLGWMLFVGLATYMGTFPEAMPPTLKWKERLPGQENKARRRIQALEEELLL", "length": 53 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDW1-1", "protein_name": "Protein FAM228A", "gene_name": "Fam228a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADTKTSKCDEHFSVEKLKEWPEPESVSLMELLAREDIDEAVHAVLFRENYVVKRLDTYLQHLAVFKERRKEMLHKKWVENVVQPLQQRITDKITSYRRPGKNQVKYEHCLKQTNKPTKVSSSCLFQKQQEFREAKGTSYQHGRGKTHDTQKEAKETEKGLSFTPFSLRPHCSSPRERQRASARLMQSKPGGRNRYKGASSEKPVFTLKSHLPKEEKTVSRSQLVFERQFRASRLSQDIKEAEKKGLVVGTGPQRPRSWAAADSVPRPSLVGRRVMTAEILGEHLVSLHQAARSGLQWP", "length": 299 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CEK3-1", "protein_name": "Serine protease inhibitor kazal-like protein, minor form", "gene_name": "Spinkl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSTWIKFLFILTLVLLPYSVFSVNIFAGPENVIKEPNCTMYKSKSECSNIAENPVCADDRNTYYNECYFCIEKVVEKLKYRYHGICIYK", "length": 90 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZP1-1", "protein_name": "TBC1 domain family member 3", "gene_name": "TBC1D3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K072-1", "protein_name": "Receptor expression-enhancing protein 4", "gene_name": "Reep4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSWMICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPFYYEFKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGKRSLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSIPDTPVPTYQDPLYLEDQVPRRRPPIGYRPGGLQGSDTEDECWSDNEIVPQPPVRPREKPLGRSQSLRVVKRKPLTREGTSRSLKVRTRKKAMPSDMDS", "length": 257 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8MP30-1", "protein_name": "Uncharacterized histidine-rich protein DDB_G0274557", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKYFLVLLVGFLLVLPSIVNPYRKGVTITNQQPKINIYQLDVNNPHNPNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNPHPHPHPHPHHHHHHQEASECLSYQGNRNRLFIKRDY", "length": 233 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NG83-1", "protein_name": "Olfactory receptor 2M3", "gene_name": "OR2M3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARENSTFNSDFILLGIFNHSPTHTFLFFLVLAIFSVAFMGNSVMVLLIYLDTQLHTPMYLLLSQLSLMDLMLICTTVPKMAFNYLSGSKSISMAGCATQIFFYTSLLGSECFLLAVMAYDRYTAICHPLRYTNLMSPKICGLMTAFSWILGSTDGIIDVVATFSFSYCGSREIAHFFCDFPSLLILSCSDTSIFEKILFICCIVMIVFPVAIIIASYARVILAVIHMGSGEGRRKAFTTCSSHLLVVGMYYGAALFMYIRPTSDRSPTQDKMVSVFYTILTPMLNPLIYSLRNKEVTRAFMKILGKGKSGE", "length": 312 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8NGV6-1", "protein_name": "Olfactory receptor 5H6", "gene_name": "OR5H6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLYLCFIFQRTCSEEMEEENATLLTEFVLTGFLHQPDCKIPLFLAFLVIYLITIMGNLGLIVLIWKDPHLHIPMYLFLGSLAFVDASLSSTVTPKMLINFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLYPVIMTNELCIQLLVLSFIGGLLHALIHEAFSFRLTFCNSNIIQHFYCDIIPLLKISCTDSSINFLMVFIFAGSVQVFTIGTILISYTIILFTILEKKSIKGIRKAVSTCGAHLLSVSLYYGPLTFKYLGSASPQADDQDMMESLFYTVIVPLLNPMIYSLRNKQVIASFTKMFKSNV", "length": 325 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R264-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r215", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNWNNIIHTIIFLSLTGPGIVGNMLIFIRHIYMPALGTEKKPVDLIVIHLAFSNMITICTTGIKDIATVFYFRNFLGDIGCKAVVFLARMARGLSICTTCLLSVVQAITISPRTSLWTKLKPQTACQIIPFILVFWIFNGLISSNLLSYIKGGSSLNRSVAATFIGHCYMLQSRHTIKWIFLSLMTLRDVIFQSLMGWSSGSMALNLYKHHKRVLYLYSSRFANNSPPEIRATWSVLILMTCFLLFYWADFILSFYHGFTVTHESILLNIKVFLELGYVSFSPYVLISRYIHPPNVFHAH", "length": 300 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R272-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLQFIKKTIFLFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLTFTNIILLLAKGLQKTIIVFGLRNFLDDIGCKIIVYLERVARGLSICTSSVLTVVQAIIISPRASGWRRLRPKSAWHILPFFSFFWILNAFISVNLIHSIRSKGMNTSQHKNSDDYCYLTPESQKIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQHVLYLQNSKLLYRTPPELRAAQSVLLLMLCFLFFYWTDCALSLFLSLSLGDSSLMINIQGFLTLGYAIFSPFVLIQRDGLIPVCWHAQ", "length": 298 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R278-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r213", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLALRNYIQINTPWCMCLFVTPLTPCLPEYWDPDSLRVEGPTESSLRHNTASCTLKNTIMQNVQFRSMSSITDAFFKMYLHTRKEEMILKILKEITFLIMTVLGILGNMSVSVNYMFSWWGSPEKKPIHLILIHLIFTNIIILLVKGLPKTIAAFGLRNFLDDIGCKIIVYMERLARGLSICTSSLLTVVQAIIISPRASGWRRLRLKSAWHILLFFLFFWILNALISVNLIHSTTNTRLNVSQLKSDDNYCYFMLPIQKIKWIVLPLMVVRDAVFQGAMGGASGYVAFLLHKHHQHVLYFQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLFLTLSSEVNILMVNTRDFLTLGYATFSPFVLIHRDGLLVECRHVQ", "length": 384 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2A9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r229", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFGNLAMGIVLSLQSALGILGNFSLLFYYLVLYNKERTLKIIDIILIHVFTSNSLIIFSKGLPEVLAVFGWNDLFDDVGCKLIMYVRRVSRSMSISMTCLLSVFQAITISTRNSCWKEFKEQTAKFMGLFISLCWILFMLVNMLFPVYTSTNRNSKNKTQKKDIEFCHSVGRDKMVDIMYTAFCVFPEVLFSLLIVSSSTTMIVILYGHKKRVQHILHTHASPRTSAENRATQTILILVCTFLAFYTLSSVLQGYVALSHDPSWWVMNITTIISMGFPAIGPFVMSRDFTVSRFCFTCIGNLKLP", "length": 306 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r178", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHDKSLKTTDDMTLQILLLCQFVVGTVANVFLFLHNISPVLTGSKQRPRQLILSHMSVANALILFLTSFPDMMAFAPRNSPTHLKCKLEYFSRLVARSTNMCSTCVLSIHQFVTLVPVNRGKAILRASVPNLTSYSCYSCWFFSVLSNIYIAIKVTGPQITDNNTDSKSKLFCFTSGFSVGIFFLRIFHDGTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNFICIIFYTFSIDSRLFMSHFSKVFAAGFPTISPLLLIFRDPKYPCSVLFNC", "length": 304 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r64", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKTLKTMEVLALQILLLCQVVVGTVGNIFLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLFAYSYDLIDFVPRKPPTDLKCKLAYFFNMVAQGTIMCSTCLLSTYQFVTLVPGNWARVMFREISPKVVSYCCYSCWLFSVLNNAYMPMYVSGPQKTHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFIGIMAWTSVSMVIHLNRHHHRMHYLHNPNQINRGHAETKAAHTIMMLVVTFVSLYILDCICSLFHISFVESRLWLIDVIELLHLSFPTVSPFLLICRDPMGPCSLLFIVGLEIHVTVGAITEEQ", "length": 320 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDFVPRKPPTDLKCKLAYFFHMVAQGTIMCSTCVLSTYQFVTVVPGTWARVMFREISPKVVSYSCFSCWLFSVLHNAYIPMNVSGPQKTHNDSDSKGNSICSISGVNVDMHFLRFSHDIIFLGIMAWTSVSMMIHLNRHHQRMNRIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFHISFVESRLWSRHVIKVLALSFPTISPLLLIFRDPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2C0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALQILLLCHVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLTDIVPRKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLNNAYMLMNVSGPQKSHNDSDSKSNSICSISGVSVDMNILRFSHDIIFLSIMAWTSVSMVIHLHRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFYISFVESRLWLRYVTKLLALSFPTISPLLLIFRDSKGHCSLHIMSVWKST", "length": 300 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R4R9-1", "protein_name": "Protein phosphatase 1 regulatory subunit 14C", "gene_name": "Ppp1r14c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVVTGGGEAAGGTSGGGARVFFQSPRGGTGGSRESSSHSGSSREDSAPVATVAAAGQVQQQQRRHQQGKVTVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPDVEIDIDDLLDADSEEERASKLQEALVDCYKPTEEFIRELLSRIRGMRKLSPPQKKSV", "length": 164 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R4V1-1", "protein_name": "NFAT activation molecule 1", "gene_name": "Nfam1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESWLLRRGARVRCLHPPSWLPAWCFLCLLPVPQTLQLTGLVSLTHTSLPIMVSLANTDVFFSCRIEDFTRLQRDLPVKLFHTDIHGRRRWEKQINCQHRPGMENHTRDCMVKLSQANTSATGIYYFIVEGEETYQSDGVVILVRDTVYQPPAFKVQEALMLGFTSLMSVLGVLGTALLLWKKKQISVLGKHTAKTCSGLKSTVGTTKPPAESVYTSLQRRETEVYACMKEETGSPVFSQSPATKEKLNRFEDDNEFNLVYENL", "length": 264 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T277-1", "protein_name": "5'-AMP-activated protein kinase subunit gamma", "gene_name": "prkag", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWYPGDEDEEFTSIIENIEKKETQEIKIKTEKLRQASLNQLPIEQSEGVGGGELSEYNNNTTNNNTPTNTTTTTNTNTTTMNNSNNNNERILSTSNGFDIRLPPNSIEQPSPSFISSSQDGVLTVDPLAVDGEKGNKESQSPPNGDNQILNNNNMFFKDITSLPSTDNKSSTNTNNNNNENPLKQTISSSPSKSTTTTTTSTSTTTTPSLSSLSSNNNNNSNSNNNYINHSSISTVSEGLENLNLKSGIKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISVERPSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNSILHILTHSRILAFMMKSFPQLPEKLLSIPIGSLGIGTFATVVTVMTHTPLVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLNLPVHQVLSTFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDSSKKVEGILSLSDILNYLLNDVKSINH", "length": 577 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VEU4-1", "protein_name": "Olfactory receptor", "gene_name": "Or14j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVENITTMRGFLLMGFSDNHELQILQALLFLVTYLLGSAGNVIIITITTLDPQLQSPMYYFLKHLSILDLSSLSVTVPQYVDICLTQSGYISYAQCMLQIFFFTGFAWGEVAILTVMSYDRYVAVCLPLHYEVIMGPSKCRWAVTAVWLSSVIPGTLYIASIFSIRFCGDRIIHQFFCDVPQVLKFSCSDDYLVTVGVADFLSAVAFACFIGIVNSYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVLLFLSTGIFAYLNPTSDSPTALQFLVSIFYTVLPPTLNPVIYSLRNETIKSVIRKLLLSSKFTG", "length": 312 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VFX0-1", "protein_name": "Olfactory receptor", "gene_name": "Or5b101", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENRTEVRCFILVGLTNDPSLQLPLSITFLLIYIITLIGNLGLILMILLDSRLHTPMYIFLGNLSLVDFCYSSTVTPKVIAGFLTGDKIMSYNACASQMFFFANFGDVENYLLASMAYDRYVAVCKPLHYATTMTTHMCASLVIGCYICGFLSASIYTMDALSLSFCESNVIHHFFCDVLAVMIVSCSDSHVNELILIYVVSFNMFFALIIILISYMFIFTNILKIHSSAGYHKAVSTCASHFTAVSIFYGTIIFMYLQPSSSHTMDTDKIASVFYTMVICMLNPLVYSLRSKDVKSAFTKIVLRSK", "length": 307 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VY69-1", "protein_name": "Vesicle-associated membrane protein 723", "gene_name": "VAMP723", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK", "length": 217 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ67-1", "protein_name": "Uncharacterized zinc finger CCHC domain-containing protein At4g19190", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGEGEGSGIRLSKRFAGGKVTGGSLEVDYKTKSGTAWSHSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPESAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELKQKPGLSPPRGGFDPDDPNQQIVAEDIFDEYGGFLEGSIPIEILKSMSSDKKRKSKKNKRHKKHSSRTVEETDESSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRKHRYSTNRRRN", "length": 595 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q91V82-1", "protein_name": "Beta-defensin 8", "gene_name": "Defb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRIHYLLFTFLLVLLSPLAAFSQKINEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK", "length": 60 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q923B3-1", "protein_name": "Neurotrophin receptor-interacting factor 1", "gene_name": "Nrif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTLPTTWPHESVKFEDVSLTFTEEEWAQLDFQQKCLYREIMMENYSNMISVEHHFSKPNVISQLEKAEDCWPMQREIPQDTLPECSWPSPDPGMNSFPSKSPLMKIEVVEVLTLNKDVAGPRNALIQSLYPEDLNPGNLKPAQQPSKRLTDTEASRQKFRHFQYEESAGPQKAMSQLRKLCHQWLQPNTRSKKQILELLVLEQFLNALPEKFRVWVESQHPEDCKAVVALLENMTSVSKDDASLACSSEATDQLKEKRKGVATLPVTFAAEVPAEEPVTFQDVAVDFNEEEWRLLGPTQKTEYHDVMLETLGNLVSVGWEPTLGNRELTPDSPIPVVKPIHDPNTNDLSRNGTQSTVFESILEDGVKEMHSIESNQVGNLQEKGHPQKKFSESSKSQDQTSRHKSQGSLNEVLPRKYVKVKQKGTGKRKGRTNTISMTRGLRIRKQQKDSVEWQGRSGSTPVTHGSSIKKQQQGSEQGKPGTSRDPITLTVPAKVYQKATGSEESIFMDSSDAMVPDVPPKIHQKGPEWHKVGESNNSMLQGSSVQNHQMESGAGRASDNSLLTHALPVKSHQKGYKEGNVQGNRNSWKHIKPHQKGSKGERVEELSTSEKHVPYVKNHLKTSERGKDREINASIKCDPYIKTYYRGSDVGRLRRANNCRKAFSLHAQQISFIKIHKGSQVCRCSECGKLFRNARYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCERCGKAFRQSSHLTRHERTHTGERPYVCIKCGKAFTQSSHLIGHQKTHGIKFKKQPKL", "length": 828 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q924S2-1", "protein_name": "Inactive 2'-5' oligoadenylate synthetase 1C", "gene_name": "Oas1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENGLCSIQARELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTALKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGDFSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSNKNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDPADPTRNVAGSDLQAWDLLAKEAQTWMQSSCFRNCDMSFVPTWDLSPERQECAFQ", "length": 362 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925U0-1", "protein_name": "Oocyte-secreted protein 1", "gene_name": "Oosp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPFVGLLGLLLLLSFMKTCADDWTAISLQCADHWFHLRIRPTIFHNIFMEPDEVFLGIGCPVTTTWPNDTYEFIYRTYSCGIANKVLCDVTLLKTQLTYISKNASLQAEMSLSCVMHNQSPHFCEAESRGDFTGDPPGWTEDMRARRDEQTVPMVQPNLSTSSEDHHVSTEPWASETSRSEAAEVPSFMDQNFSVFHFSRM", "length": 202 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94490-1", "protein_name": "Ubiquitin conjugating enzyme E2 B", "gene_name": "ubcB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAAHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK", "length": 148 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q945S5-1", "protein_name": "Vacuolar cation/proton exchanger 4", "gene_name": "CAX4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSISTESSSNLSLLENGGGGSDKPTAETSRRVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQREDVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPSSKLLF", "length": 446 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ", "length": 386 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99N64-1", "protein_name": "Germ cell-less protein-like 2", "gene_name": "Gmcl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C7P4-1", "protein_name": "Putative zinc finger CCCH domain-containing protein 9", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADAGDNQQEAERRSDETESRSIKEPKEKEDEDENPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSGARPEKRSKIVPDFQMRDPRHHDTEWRFERERMERIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQRDSIERQRREAQENLQQQRQRDSIERQRREAQENLQQQRLQDMPENHNVDDQQNLQEQRRISIEKERTEARLRLEQIRPTVSFPINEFIRAVVLLRELIENWDDKAWKK", "length": 321 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M4-1", "protein_name": "DNA-directed RNA polymerase subunit 12-like protein", "gene_name": "NRPB12L", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLQQSETDDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKRILDKKETRIGV", "length": 61 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQK8-1", "protein_name": "Small proline-rich protein 2A1", "gene_name": "Sprr2a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWP4-1", "protein_name": "Lymphocyte antigen 6K", "gene_name": "Ly6k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFLVALLVVLGLQLVQSNALTCHVCEAQNSYACSNPSQCPGEKKFCLLAVTRIFERFFYVSKQCTRRCPTPVVSPPSTNPPSEPKEFLIEKPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGFMVLTANGLSALCLL", "length": 154 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D541-1", "protein_name": "Coiled-coil domain-containing protein 7A", "gene_name": "Ccdc7a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCAKHPSTISMKLTSVPELPYKKGLLNSSPKPKEKHNAKSKYGKNESMVLRSPPTGESIVRFALPIPLSKTKDKISADEMVRRITTNLKMVVSNLEDTYGACYDNGEKAAEKSEAEGLSIGDDVSSFLLCCSQFTSQLEEAVKEECGALESLYKWFQQQVNQMEEISKDQSNLEELQSDGKTASLNIVQIAKLARKFEDFKSRLKTRKEVMQTKNEDKEIMAETLKHYGLMEKQIEEFITSHSALESQTETESQSGTPSVTTRMARMIKIFENQSTMLEKALNDQQTIESKYKQLETDFQMLIMEKTLLEAEIRRLREIERVKSAAKEEQTKKSGKSEKKKFKEKEKNLSPNREFKSIEELLQIQKEAELLKTEKKTLQGQLKWALEEAERNKTQLEFVLHQKMEMFKEESKTKVGQSQNKSKVKIEDSKDSLPKKSDTQLGGQRKDQISSDQSKRPKKKQLADIDPSAVEDFPPETFKSFTVMPLIEEHRESISSQPKEEMAKASEQSEAEDIEGPLEIPSESSNEDDDLLPEDESPMMEQVTDVGRYKSIYISAEPIDTMSLISRTQSEMETLEAINYDNVLNEGEEQDKKIGKDSDTGRKSKRKRSSKIRKLSTHEEESDIVHYEEATKAKVPSKKRASDPYGDEAYESRGSVSKAQTYTKKQGTHQRGRGSASDAYGDEAYESRGSISKAQTYTRKQGTHQRGRGSVQEEESDTVHYEEVTRAKVPSKKQASDPYGDEAYESQGSVSKAHTHTKKQGTHQRGRGSVHEEESDTMNYEVPRKSKISSRRKGFALPITHQVEMHSSESQGSISKSNTETKKQGTHKRGRDSDADGARTPVSQGSDSKADTERKKHRSKEESTISKDSIPVLDEVQDKTFEHQESGLRLEVQAKKLTFSSQNIHNEESATDIKVEYQNVPSSSQVQLKKQKPLGGEIFTTHFVVPAESHAQLYQTHTPETQIERGTTSGTARLTTIPVEHPKKEASPDNLFPEKKLYITRAPTQTKKQYPPWDAKAETQKKTVKEVQGISEPQTKLNPTMSGIILHLDMDRVVETDLENLEETIVPHVLRSELEIGTDAKNMPETPTSREAVRTEAKGNQDVTISIAKGMKLIGKLKDQHGLSSFASKDTISPGKSLIKSSRDNQDDSLLETKPQENTSDKYHPSKTFPTKVINMLPFSEKSLGSTSANVDVAPKPVYRASRGRSRISKALQQLLKTSEHLKPTSTKNQNADLEKHLYISVRSANKHTQKDKKHGQSNNQKLKKQGALSSTKKQKHKEQPKTETIVENNDKFDDNLMMTTSSPNIKIIKELSKTLNLDGGDIELSDFVFKTASAAKKLENKGPSKTKNLNKESSRDIHILHLTTSAIRTLLLDEEAKIRSLEKKLMKQSTILQKSVSSMKKFMFEEPSRETKMKRKKREKRKIVVKSPHILPITTTQKHTIKEKSEISNLEKPIVRGTDILKKSTSARKKRVLKGKSKSATLPKKCDNFPFDLVRSSSDSSKQEVEEQPKPGNVDKKVSDDSYSPDISTTPTKKHTLKGQSKSRTIYEKGVDLPNNLVLSKSASSIQEFEEQPQPGNVDKKVSDDSYSPDISTSPTKKHTLKGQPKSENSDEKGIKRPNNLHMSASVARKRLLKALSTIP", "length": 1642 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5R2-1", "protein_name": "WD repeat-containing protein 20", "gene_name": "Wdr20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEGRGKETNEIKTHFTTREGLYRLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQTGNGNRLCFSVGRELYVYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSSGNMYSYNVEHTYGTTAPHYQLLKQGESFAVHNCKSKSTRDLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGRGHKSWVSVVAFDPYTTSVEESDPMEFSDSDKNFQDLLHFGRDRANSTQSRLSKQNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARAHANVMNATGLPAGSNGSAVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAITSGVSKFALLSLHDRKERHHEKDRKRNHSMGHISSKSSDKLNLVNKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPGKVSKFQP", "length": 567 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAF8-1", "protein_name": "Uncharacterized protein C4orf51 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVGQPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLAYRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK", "length": 208 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPV9-1", "protein_name": "Beta-defensin 5", "gene_name": "Defb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKIHYLLFAFLLVLLSPLAGVFSKTINNPVSCCMIGGICRYLCKGNILQNGSCGVTSLNCCKRK", "length": 64 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPX4-1", "protein_name": "P2Y purinoceptor 12", "gene_name": "P2ry12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVPGANATSANTTSIPGTSTLCSRDYKITQVLFPLLYTVLFFAGLITNSLAMRIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKLGAGHLRTLVCQVTSVTFYFTMYISISFLGLITIDRYLKTTRPFKTSSPSNLLGAKILSVAIWAFMFLLSLPNMILTNRRPKDKDITKCSFLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYSLITKELYRSYVRTRGSAKAPKKRVNIKVFIIIAVFFICFVPFHFARIPYTLSQTRAVFDCNAENTLFYVKESTLWLTSLNACLDPFIYFFLCKSFRNSLMSMLRCSTSGANKKKGQEGGDPSEETPM", "length": 343 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ER80-1", "protein_name": "Receptor-transporting protein 4", "gene_name": "Rtp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFPDDFSTWEQTFQELMQEEKPGAKWSLHLDKNIVPDGAALGWRQHQQTVLGRFQCSRCCRSWTSAQVMILCHMYPDTLKSQGQARMRIFGQKCQKCFGCQFETPKFSTEIIKRILNNLVNYILQRYYGHRKIALTSNASLGEKVTLDGPHDTRNCEACSLNSHGRCALAHKVKPPRSPSPLPKSSSPSKSCPPPPQTRNTDFGNKTFQDFGNRTFQGCREPPQREIEPPLFLFLSIAAFALFSLFTR", "length": 249 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FFP9-1", "protein_name": "Serine/threonine-protein kinase SRK2H", "gene_name": "SRK2H", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDKYEVVKDLGAGNFGVARLLRHKETKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEAEARYFFQQLICGVDYCHSLQICHRDLKLENTLLDGSPAPLLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKHADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIQRIMAVQYKIPDYVHISQECRHLLSRIFVTNSAKRITLKEIKKHPWYLKNLPKELTEPAQAAYYKRETPSFSLQSVEDIMKIVGEARNPAPSSNAVKGFDDDEEDVEDEVEEEEEEEEEEEEEEEEEEDEYEKHVKEAHSCQEPPKA", "length": 360 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLZ3-1", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN12", "gene_name": "KIN12", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGSSEKTTNKLVSILPNYRIGKTLGHGSFAKVKLALHVATGHKVAIKILNRSKIKNMGIEIKVQREIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDYIVEKGKLQEDEARHLFQQIISGVEYCHRNMIVHRDLKPENVLLDSQCNIKIVDFGLSNVMHDGHFLKTSCGSPNYAAPEVISGKPYGPDVDIWSCGVILYALLCGTLPFDDENIPNVFEKIKRGMYTLPNHLSHFARDLIPRMLMVDPTMRISITEIRQHPWFNNHLPLYLSIPPLDTIDQAKKIEEEIIQNVVNIGFDRNHVVDSLANRIQNEATVAYHLILDNRNQNSVPNDPFQSKFKEISDGIFNSTLPVQNITSHVGHSFSALYGLKSNVKDDKTWTLGLQSQGSPYDIMTEIFKALQNLKICWKKIGLYNIKCRWVRSFAYYKNHTIEDECAIILPTVIKFEIQLYKVREGKYLLDILRIDGPQFIFFDLCVAFLRELGVL", "length": 494 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVV4-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 55", "gene_name": "RH55", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDREVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDSNKASRKRKLTGRQRQTIQTAQDEEEMNLRL", "length": 465 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JI02-1", "protein_name": "Secretoglobin family 2B member 20", "gene_name": "Scgb2b20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACLPFFEGYASVLSGSRVWLYQELQAFNATAEEKVALEKIQDCFSEERIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJQ7-1", "protein_name": "X-linked lymphocyte-regulated 4B", "gene_name": "Xlr4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLV9-1", "protein_name": "Prolactin-2C5", "gene_name": "Prl2c5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPSLIQPCSWILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFTEFEKHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNVPDIIISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDIYLNILKCYMLKIDNC", "length": 222 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LJY9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 18", "gene_name": "CYP705A18", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATLISVDFQHCFMYIILLCLFSLLCYSLFFRKPKGTRVGCDLPPSPPSLPIIGHLHHLLSSLTHKSLQKLSSKYGPFLHLRIFSVPIILVSSASVAYEIFKAHDVNVSSRGAAAIDESLLFGSSSFIYAPYGDYWKFMKKIFATKLLRPQVLENSRGVRAEELKRFYRRILDKARKNENIEISKESAMLMNNILCRMSMGRSFSEENGEAERVRGLVGESYALVKKIFFAATLRRLLEKLRIPLFRKEIMGVSDRFDELLERIIVEHKDKLEKEHQVMDMMDVLLAAYRDKNAEYKITRNHIKSFFVDLFVGGTDTSVQTTQWTMAEIINNPNILQTLRKEIDSVVGKSRLIHETDIPNLPYLQAVVKEGLRLHPPGPLLIRTFQERCEMKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLSYSRSGQEDEKEQTLKYLSFGGGRRGCPGVNLGYIFVGTAIGMMVQCFDWKIEGDKVNMEETYGGMNLTMVNPLKCTPVPRTQPFSFTSNLEILSS", "length": 524 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY1-1", "protein_name": "SKP1-like protein 8", "gene_name": "ASK8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSTKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE", "length": 152 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTG5-1", "protein_name": "Callose synthase 4", "gene_name": "CALS4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNQPNRGQILQTVFSHFFPVASPDSELVPSSLHEDITPILRVAKDVEDTNPRSLFLQDLDIKSVDDSINILSGHSHALDKANELDPTSSGRDVRQFKNTILQWLEKNNESTLKARQKSSDAHEMQSFYQQYGDEGINDLLNAGAGSSSSQRTKIYQTAVVLYDVLDAVHRKANIKVAAKILESHAEVEAKNKIYVPYNILPLDPDSKNHAMMRDPKIVAVLKAIRYTSDLTWQIGHKINDDEDVLDWLKTMFRFQKDNVSNQREHLILLLANVQMRQTQRQPNLLDDRALDTVMEKLLGNYNKWCNHVGLESSLRFPKDKQQKVVQQRKLLYTGLYLLIWGEAANLRFMPECLCYIYHHMAFELFEMLESKGSKKKYKPKNPTYSGKDEDFLTKVVTPVYKTIAEEAKKSGEGKHSEWRNYDDLNEYFWSKQYLDKLGWPMKANADFFCKTSQQLGLNKSEKKPDLGDGCVGKVNFVEIRTFWHLFRSFDRMWSFYILSLQAMIIIAWNETSESGGAVFHKVLSVFITAAKLNLFQAFLDIALSWKARHSMSTHVRQRYIFKAVAAAVWVLLMPLTYAYSHTSIFIVAILIYLSPNMLPEMLLLIPSIRRTLEKSDFRPVKLIMWWSQPELYIGRGMHESAWSIYKYMMFWIVLLTSKLAFSYYVEQIKPLMGPTKEIMSVPMPGYWLPEFFPHVKNNRGVVITLWSPVILVYFMDTQIWYAIVSTLVGGLYGAFRHIGEIQTLGMLRSRFQSLPGAFNACLIPNENTKEKGIKLAFSRKCHKIPNTNGKEAKQFSQMWNTIINSFREEDLISNRELELLLMSCWAYPDLDFIRWPIFLLASKIPIAVDIAKKRNGKHRELKNILAEDNCMSCAVRECYASIKKLLNTLVTGNSDLMLITTVFTIIDTHIEKDTLLTELNLSVLPDLHGHFVKLTEYVLQNKDKDKIQIVNVLLKILEMVTKDILKEEIKRLHLLLTVKESAMDVPSNLEARRRLTFFSNSLFMEMPGAPKIQNMLSFSALTPYYSEDVLFSTFDLEKENDGVSILFYLQKIFPDEWKNFLERVKCGTEEELDAIDYLKEEIRLWASYRGQTLTKTVRGMMYYQKALELQAFFDLANERELMKGYKSAEASSSGSSLWAECQALADIKFTYVVACQQYSIHKRSGDQRAKDILTLMTTYPSLRVAYIDEVEQTHIYSKGTSENFYYSALVKAAPQTYSTDSSDSGHMLDQVIYQIKLPGPPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRNLLQEFLEKNGGVRYPTILGLREHIFTRSVSCLAWFMSNQEHSFVTIGQRVLANPLKVRFHYGHPDVFDRVFHLTRGGVSKASKVINLSEDIFAGFNSTLREGTVSHHEYIQVGKGRDVGLNQISMFEAKIANGSGEQTLSRDLYRLGHQFDFFRMLSCYFTTVGFYFCSMLTVLTVYVFLYGRLYLVLSGVEKELGNKPMMMEIILASQSFVQIVFLMAMPMIMEIGLERGFYDALFDFVLMQLQLASVFFTFQLGTKFHYYCKTLLHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKATELGILLLVYHIFGPTYIGLFTISIWFMVGTWLFAPFLFNPSGFEWHEIVEDWADWKKWIEYDNGGIGVPPEKSWESWWEKDIEHLQHSGKWGIVVEIFFALRFFIFQYGLVYQLSAFKNKYSSLWVFGASWLLILILLLTVTVLDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKHRSSKNKD", "length": 1871 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU95-1", "protein_name": "Pyruvate kinase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEMLLGGQATNGALRSKTKIVCTLGPASRSVEMIEKLLKAGMNVARFNFSHGSHSYHQETLDNLRTAMDNTGILCAVMLDTKSPVIRTGFLKEGKPIQLKQGQEITISIDYKIQGDSNTISMSYKKLAEDLKPGDVILCSDGTISLNVLSCDKYLGLVRCRCENSALLGERKNVNLPGIVVDLPTLTEKDKEDIMQWGVPNKIDIIALSFVRKGSDLIQVRKLLGEHSKSIMLMSKVENQEGVMNFDKILENSDAFMVARGDLGMEIPIEKMFLAQKTMINKANAHGKPVVTATQMLESMTVSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDILHKKTLGMVSLPLSPIESLAASAVSTARSVFASAIVVLTRGGYTAELVAKYRPSVPILSVIMPEIAECSDSVAHVARRGLIYRGIIPVVGCSARDSTEEMIRLAIGFAKTKGICKTGDSIVALHKIDGSSIVRIVSVE", "length": 497 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX08-1", "protein_name": "Annexin D6", "gene_name": "ANN6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASLKIPANIPLPEEDSEQLHKAFKGWGTNEGMIISILAHRNATQRSFIRAVYAANYNKDLLKELDGELSGDFERVVMLWTLDPTERDAYLANESTKLFTKNIWVLVEIACTRPSLEFFKTKQAYHVRYKTSLEEDVAYHTSGNIRKLLVPLVSTFRYDGNADEVNVKLARSEAKTLHKKITEKAYTDEDLIRILTTRSKAQINATLNHFKDKFGSSINKFLKEDSNDDYVQLLKTAIKCLTYPEKYFEKVLRRAINRMGTDEWALTRVVTTRAEVDLERIKEEYLRRNSVPLDRAIANDTSGDYKDMLLALLGHDHA", "length": 318 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXS7-1", "protein_name": "Citrate synthase 1, peroxisomal", "gene_name": "CSY1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEISERARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGNEYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVEELAEKSTYTEVTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSKQVRDKQIVRVLGQAPTIAAAAYLRKAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSGGDVYTAVSGGVGAIYGPLHGGAVEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPRGKVVKKLADEVFSILGRDPLVEVGDALEKAALSDEYFVKRKLYPNVDFYSGLINRAMGIPSSFTAVSRIAGYLSHWRESLDDPDTKIMRPQQVYTGAGIRHYETVRERTKL", "length": 480 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY06-1", "protein_name": "Glycine/proline-rich protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MITCILKISISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRFYCRFDTGFDVRFAAGFAADLTIGFTIGFDSGFATFLDVGLDDGFATGLDISFAGGFVTGFATDFDVGFDTGFTIGFDTGFDVGLPAVFSIGFDTGFAVGFAISFTVGFDAGFPTGFFVSLDVGFVADFVIGFATGIGVGFEVDFATDFDTCFATGFAVSFDVGFAGGFSIGFAADFANGFTVGFDGGFDASFFVGLDVGFVVGFVTSFAAGLDVGFAIDFATGFDTGFAFGLAFGFDVGFAAGFAVGFATGFTVVFDVGFASDFFVGLDVGFLTGFATDFDIGFVVDFDIGFATGFVVGFDDGSIVGLVVGLPASLDDGLAIDFVVGLDIGFVTGLFVGLVDGLTTDLDVGLVDGLDDGLDDGLDVDLVVVGFVVDGLAVDLDVGLGVGLTVGFVDGLDVGFDDGLDADTVDGLDVGLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDGLDVDLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDDGLVVGLFDVFVGTGLSWEIPPPGKLPPDASPLGIGSFGVGPPGASPFIASPSGEGPLSEGLLGIRSFGISPLSIRPLGISPLGISPPNIEPSKADASDADPSNAGPLGISPLSIDPPVAGASDEGPLGKLPPDLSPPGKGSSGEGPLVESPPSEGPLGVDPLGAGSLGISPLGKSPLRIRPLGISPFGKIPSNIDPSSALASDGGPPDEPASAEGSPDVGIFGISPPIIDPPVEGASDGDPPEKLSLDISPLGKGPSGVSLLGAGPPGVGPVIASPPGEGPRDAGPLGAGSLGISPLNIRRLGISPSGISPPNIDLPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGESESDGDPAGKLPLDISPLSKGPSCVSPLGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLSISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGEDASDGDPPGKFPLDISPLGKCPSGVSPLGVGPPGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLGISPFGISPPNIDLPVAGTSIGGPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGKLPLDISPVGKGPSGVSPPGAGPPGDGPVIASPPGESPLDAGPLGAGSLGISPFGISPPNIDWPVAGTSFGGPPGEGASNGGPLVVGPFDMPVVGASDGDALEKLPLDISLPGKGPSDVGPPGAGLPGAAPPGVDLSNVGASDRGASGEGASDGCPPDVGPFDICLLSIDPPVVGASDGGPPDEGASNGGPPDTDSFGGDPLCASPLGIDPPIVDASDGDPFGAGSPDEDPSNENASGEGASGESPPCSDVSCKGPSSAGASIGCSLDNGASTPSSPDTFLSNVFPSDKSSPDAFSPDVAALVTLPSGKDPFDISPPIVALLDVSPLGKTSSDAYSSGISPGIFEKSFPLVKLQTIEYM", "length": 1504 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S0-1", "protein_name": "Probable mannose-1-phosphate guanylyltransferase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQLLVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDIVM", "length": 364 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NR96-1", "protein_name": "Toll-like receptor 9", "gene_name": "TLR9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFCRSALHPLSLLVQAIMLAMTLALGTLPAFLPCELQPHGLVNCNWLFLKSVPHFSMAAPRGNVTSLSLSSNRIHHLHDSDFAHLPSLRHLNLKWNCPPVGLSPMHFPCHMTIEPSTFLAVPTLEELNLSYNNIMTVPALPKSLISLSLSHTNILMLDSASLAGLHALRFLFMDGNCYYKNPCRQALEVAPGALLGLGNLTHLSLKYNNLTVVPRNLPSSLEYLLLSYNRIVKLAPEDLANLTALRVLDVGGNCRRCDHAPNPCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSWLNASWFRGLGNLRVLDLSENFLYKCITKTKAFQGLTQLRKLNLSFNYQKRVSFAHLSLAPSFGSLVALKELDMHGIFFRSLDETTLRPLARLPMLQTLRLQMNFINQAQLGIFRAFPGLRYVDLSDNRISGASELTATMGEADGGEKVWLQPGDLAPAPVDTPSSEDFRPNCSTLNFTLDLSRNNLVTVQPEMFAQLSHLQCLRLSHNCISQAVNGSQFLPLTGLQVLDLSHNKLDLYHEHSFTELPRLEALDLSYNSQPFGMQGVGHNFSFVAHLRTLRHLSLAHNNIHSQVSQQLCSTSLRALDFSGNALGHMWAEGDLYLHFFQGLSGLIWLDLSQNRLHTLLPQTLRNLPKSLQVLRLRDNYLAFFKWWSLHFLPKLEVLDLAGNQLKALTNGSLPAGTRLRRLDVSCNSISFVAPGFFSKAKELRELNLSANALKTVDHSWFGPLASALQILDVSANPLHCACGAAFMDFLLEVQAAVPGLPSRVKCGSPGQLQGLSIFAQDLRLCLDEALSWDCFALSLLAVALGLGVPMLHHLCGWDLWYCFHLCLAWLPWRGRQSGRDEDALPYDAFVVFDKTQSAVADWVYNELRGQLEECRGRWALRLCLEERDWLPGKTLFENLWASVYGSRKTLFVLAHTDRVSGLLRASFLLAQQRLLEDRKDVVVLVILSPDGRRSRYVRLRQRLCRQSVLLWPHQPSGQRSFWAQLGMALTRDNHHFYNRNFCQGPTAE", "length": 1032 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QUG3-1", "protein_name": "Prion-like protein doppel", "gene_name": "Prnd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNRLGTWWVAILCMLLASHLSTVKARGIKHRFKWNRKVLPSSGGQITEARVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKLHQRVLWRLIKEICSAKHCDFWLERGAALRVAVDQPAMVCLLGFVWFIVK", "length": 179 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SAC9-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAGAASALFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQFTEARILSEFIKTDAYRMEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM", "length": 428 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCN2-1", "protein_name": "Cytochrome P450 71B31", "gene_name": "CYP71B31", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMFLGLLFLFPLFFILFKNLLPPRKKLPPGPTGLPLIGNLHQLGRLLHSSLHKLSLEHGPVMLVRWGVVPMAVFSSNEAAKEVLKTHDLETCNRPKLVANGLFTHGYKDIGFTQYGEEWREMKKFVGLELFSPKKHKSFRYIREEEGDLLVKKISNYAQTQTLVDLRKSLFSYTASIIFREAFGQNFRECDYINMDKLEELVQETETNVCSLAFTDFFPRGLGWLVDRISGQHSRMNIAFSKLTTFFEDVIDELLKTKQLDDHSDLVTAMLDVINRPRKFGSLKITYDHLIAMMSDVVLAGVNAGTVTMIWTMTELTRHPRVMKKLQEEIRATLGPNKERITEEDLEKVEYLNLVIKESFRLHPPAPLLLPRETMSDIEIQGYHIPKNAHVKINTYAIGRDPKRWTNPEEFNPERFLNTSINYKGQHYELLPFGAGRRNCPGMTLGITILELGLLNILYYFDWSLPSGMTIKDIDMEEDGALNIAKKVPLQLVPTLP", "length": 498 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ39-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 6", "gene_name": "CYP705A6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAILSVDFQNCFIFIVLCLFSLFCYSLFFKKPKHPRGCDLPPSPPSLPIIGHLHLLFSPLTHKSLQKLSSKYGHLLHLRIFNVPVILVSSASVAYEIFRAHDVNVSSRGVAAIDESLLFGSSGIITAPYGDYWKFMKKLIATKLLRPQSLESSRGIRGEELTRFYNSLLDKARMTESVEISTEAMKLVNNTLCRMSMGRSFSEENGEAEKIRGLVGESYALTKKMFLASLLRKPLKKLRISLFEKEIMGVSDRLDELLERILVEHEEKLHEEHQGTDMMDVLLAASGDENAEYNITRNHIKSFFVEIFIGATDTSVQTTQWTMAEILNHPNVLERLRKDIDSVVGKTRLIHETDLPNLPYLQAVVKEGLRLHPPGPLLVRTFQERCKIKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLRAPPMGGSLDKFIEFS", "length": 442 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMT4-1", "protein_name": "Large ribosomal subunit protein eL13y", "gene_name": "RPL13C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK", "length": 206 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIIRDIMEDPENEGPHNMRSDFEPLLSVLRLRDYETGDIIEFDSTEASEEALSDITEFGSTEASEAHFEEPYSARIKKVEKEINELAEKICNLGIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVKGYQKFSATPKYMAYYI", "length": 464 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM4-1", "protein_name": "Serine hydroxymethyltransferase 5", "gene_name": "SHM5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISESRND", "length": 470 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWH4-1", "protein_name": "Syntaxin-42", "gene_name": "SYP42", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSAEREREIQQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQREGAMVKCATILLVLCLIMIVLLILKNILF", "length": 323 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYN6-1", "protein_name": "SOUL heme-binding family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEAALSIFKLSFLLTLLSGGSDLIDSLPPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIWFPFEMEDEETVSIVTQ", "length": 225 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZB4-1", "protein_name": "Putative DEAD-box ATP-dependent RNA helicase 43", "gene_name": "RH43", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVDDGYVEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV", "length": 542 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0E0-1", "protein_name": "Putative ATPase, plasma membrane-like", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATGDSLEDIKIEIDDDLEKIPIEEVFKKLRCSREGLSGAEGKERLKIFGPNKLENKKKEHITLRFFALMFKPLSWVIQAAAIMAMLFANGDGRQLFLGIVCLLIVNTIICYLKEDDAANVVAMARAGLSPKTKVLRDGKWSEQEASILVPGDIVSIKPGDIIPCDARLLEGDTLKVDQSALTGEFGPITKGPGEEVFSGTTCKQGEMEAVVIATGVHTFSGTTAHLVDNRTNKVGHFRKVVTEIENLCVISIAIGISIEVIVMYWIQRRNFSDVINNLLVLVIGGIPLAMPTVLYVIMVTGSLRLYRTGTITQRITAIEDMAAIDVLCSDKTGTLTLNKLSVDKNLIKVYSKDVEKEQVLLLAARASRIENRDGIDAAMVGSLADPKEARAGIREVHFNLVDKRTALTYIDGNGDWHRVSKGTPEQILDLCNARDDLRKSVHSAIRNYAERGLKSFAISWFRNTNCNTVFFFPYQLCSEHKYHIVNKLQERHICGLIGDGVDDVPSLKKADVGIAVANATEAARAASDIVLTEPGLSVIIDAVLASRAILQQMKHYTIYAVSITIRVVFGFMFIALIWKFDFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSLFDNMVHLVLNSYAKLSNGIYNHTQADHTYSLLEVSTPPSQDLRGVGWV", "length": 813 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0H7-1", "protein_name": "Histone H2A.8", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVCNTNILKDVSTKISAFENVRMIMVEGEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH", "length": 118 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VXF6-1", "protein_name": "Calnexin 14D", "gene_name": "Cnx14D", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAWKMLFAILLLLSAAKTGYLAPESENSVEDVQIEPGAIYGDEKFAYKSPVIDAEKFYFADHFDDVEASRKRWVLSQAKKNDIADEIAKYDGIWNWESPQRIFWANDLGLVLKSKAKHAAIAAPFRQPFDFKSNKPLVVQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNLKMHFIFRHVNPLNGNITEKHCKKPNARLGVPFTDKLPHLYQLVVRPDNSFEIRLDHKIIKEGSLLTDFVPPVNPPAEIDDPNDHKPESWDERKKIPDPNAHKPEDWDEDAPPHLPDTDAVMPNGWLEDEPDMIFDPTAIEPEDWNSEIDGEWEAPLVENPVCKKAPGCGKWKAPLIPNPNYKGKWSAPMIENPNNQGKWAPRKIANPDFFEDLKPFQMTPINAVGLELWSMSSDILFDNLIITDDVELARDFAANSFDIKRLYIDRESFGNKVVELARANRAIWGIVIVAIAVPVAITIFCKFGLGPSRVAAAKKAAAAAAKKTDDPQPDDDLGAEEEEKLEKGKKEEEKKEEEEEEEKEENKEEKKEEEKDDEKEMKDCEEEEDDEEKDDEEKTDERAAGDTNKESTPLSASPKKNQKSYLDNNEDEEDTLKNKEPTPKKRKRKALKE", "length": 639 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W240-1", "protein_name": "K Homology domain-containing protein", "gene_name": "cg3927", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALLIDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMNPKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYMEEVEYDYDEHLMFCSPVVRL", "length": 270 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W4G6-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG2861", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDYEIIEFVRRHISHIDISAETRMRYPDPISNNNFDWNSIGLGEQEDAIGQDQQSQALNENANNVSPDVPPSTIAEPTLEPSTIEGNQGQNPRIISSMPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNTESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESDTNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCDVETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKIRKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQNFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIGKIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGGTNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQSSESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPNGEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIPNSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQTAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPKAPRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAPRVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLETPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSNMPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMKSDGRIKQGRVSKPSLRFSPSSSSLRPVVRSLSSSSSSSSSWSSCTTCSTCSSCSTCSSSSDSSQSSRSRNRKRRSPKVPIPHKLFESNGEINFQLGQPTRLESPSPPPPVPMQACGTFEEHLTDLTLVRVHAISPLRSPTYDFDFDLPEPMLSEESSSSSSESNDESNVNCQMAPNSQNVSMHFLKVMVFYNCYVLFQQLEKKHQSLFEESSSSSSSESNDETNVNCQMTPNSQNQKKLQSAPIREPSPDQPPEAASRSSNGGTIGPCNLKAFRRDFMISNAENTGFTNPSELNLKKCATKVCTPMERNSGSQLPIQNRFILPNSNKEEGKMNVEPVMPKHKPSRIPIRTKTPIALNLMKEPEDNARKPKNILKPFFSNADVNPCSSTDYEPNFKPCESPLPAKQNDFKLINKDKKSWVSHYQEQESQELKENSFFYAKFNLPNIPKKSFKDSKANAERRCTKTFEDVRKEAQQSRYTKAINKRQNKKAMLESALGNAITEDPTVNCNLADNPNDQVEMPRNPDIVEPTVKPVKFKAFVSASIKPKSSKKRKLMNSASNSKLFKFKIFESEVNKDENEEEDVIPDNLIIPVKRKQNISELLDMQPSTSKAAATITSQPKIAQLKRMPSKLLNEKMKSYAKKRSNDDENKDTKNTGMHMHRYKIPKLSANKPQNTSTTQSPTRGFSRLPGMYQEPNFQNAQHPFSTRGYYPYQRAYPLHRPTSQYHMNQPQPLRLHHSMYVDAEPSFESVFPAPRYQPYNINPSMRHHYSYPGEPSPSTYPMGGIPFQNNNTLYPPMRNDLCYPRGRLNYPVRNLPPMNSQGTYPPNYPQNFLPNYPPSRQFLLSMQRLADINKQIASGSIESVGGFIQMAYAGRKYRTLKDLRERTMLSKDSLRKIFKCMCKIKRPKWRISKFYLYAYWCEISGIPQSSEFGKPLELNAAYRKVISSYAENKFLRMESLMEKTGFGKSKLKRVLKMIGRKRSTKWRLLNYRKPLIHLHRSQDM", "length": 1893 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNGTEGSNFYIPMSNRTGLVRSPYDYTQYYLAEPWKFKALAFYMFLLIIFGFPINVLTLVVTAQHKKLRQPLNYILVNLAFAGTIMVIFGFTVSFYCSLVGYMALGPLGCVMEGFFATLGGQVALWSLVVLAIERYIVVCKPMGSFKFSANHAMAGIAFTWFMACSCAVPPLFGWSRYLPEGMQTSCGPDYYTLNPEYNNESYVMYMFSCHFCIPVTTIFFTYGSLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFLFAWVPYASFAAWIFFNRGAAFSAQAMAVPAFFSKTSAVFNPIIYVLLNKQFRSCMLNTLFCGKSPLGDDESSSVSTSKTEVSSVSPA", "length": 349 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9XK79-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4L", "gene_name": "nad4L", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLIDLILIAIYVIGISGLIFNKNNIINILIISELNLGTLGMLFVLASVELNDILGELSGLYILTFTAAESAIGLAIVVILYSKTGIINIRHLNKLKG", "length": 98 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Y2B0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "CNPY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1X0-1", "protein_name": "C-C motif chemokine 27", "gene_name": "Ccl27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEGLSPASSLPLLLLLLSPAPEAALPLPSSTSCCTQLYRQPLPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGTVPSLNLVLQKKMYSHPQQQN", "length": 120 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "S4R2L0-1", "protein_name": "Secretoglobin, family 2B, member 12", "gene_name": "Scgb2b12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGILLLLGLLITGELSFQTTEACVPFFEVYASVLSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLDNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "W4VSP8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNLQSKHQQRFFNKDIFFSL", "length": 311 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WF74-1", "protein_name": "Uncharacterized protein LOC100334758 precursor", "gene_name": "si:dkey-52p2.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARTSENMIGKVLFVLFLLSGPTSVLTDFHSLQILGTYIKGDTLFPQISFTFMLDDLTVGLYITERDEFIPRDNTTNEDETVSDMLDKIKNELQPLLKGTLIFQNSTESPQLFQIAWHCELLDNNKTGQMILKIAFSGSTTDEVSFYGNNFTCQCQNNMATVPLEYFQMQFKSIYYPVCMTTLGGYLVKRQVQVNRKVQPKVRLIKKVHPKSGGFRLSCLASEFYPYFINLTLLRDGQPVSDHEVTGGDLLPNGDGTYQMRKSLEIRADEREKHKYTCSAKHLDKNLDVDFEFDPSYPVKIVIPVVVLLSLVLVLTAVLIHKCMNKQAASPPEQQEPIEMGGRLRK", "length": 346 }, "evidence": [ { "id": "A0A4X1TRA8", "url": "https://omabrowser.org/oma/group/A0A4X1TRA8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRA8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRA8" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRA8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRA8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRA8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRA8" } ], "pmid": "" }, { "name": "cytosolic small ribosomal subunit", "id": "GO:0022627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022627", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRA8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRA8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRA8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRA8" } ], "pmid": "" }, { "name": "ribosomal small subunit assembly", "id": "GO:0000028", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000028", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRA8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRA8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TRQ4-1", "uniprot_ac": "A0A4X1TRQ4", "uniprot_id": "A0A4X1TRQ4_PIG", "mass": { "chemical_mass": 7324.0, "monoisotopic_mass": 7324.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1TRQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRQ4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRQ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRQ4", "locus": {} } ], "crossref": [ { "id": "A0A4X1TRQ4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TRQ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "A0A4X1TRQ4", "url": 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Transcript", "id": "ENSSSCT00000031035.3", "url": "https://www.ensembl.org/id/ENSSSCT00000031035.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023662.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023662.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 34 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TUM7-1", "uniprot_ac": "A0A4X1TUM7", "uniprot_id": "A0A4X1TUM7_PIG", "mass": { "chemical_mass": 57175.0, "monoisotopic_mass": 57175.0 }, "refseq": { "ac": "XP_001928880", "name": "transmembrane protein 180 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928880" }, "gene_names": [ { "name": "MFSD13A", "type": "recommended", "evidence": [ { "id": "A0A4X1TUM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUM7" } ] }, { "name": "MFSD13A", "type": "synonym", "evidence": [ { "id": "XP_001928880", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928880" } ] } ], "protein_names": [ { "name": "Major facilitator superfamily domain containing 13A", "type": "synonym", "evidence": [ { "id": "A0A4X1TUM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUM7/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 180 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_001928880", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928880" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TUM7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUM7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MFSD13A", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUM7", "locus": { "chromosome": "14", "start_pos": 113478697, "end_pos": 113464174, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010584", "url": "https://www.ensembl.org/id/ENSSSCG00000010584" } ] } } ], "crossref": [ { "id": "A0A4X1TUM7", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TUM7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd17481", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17481", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157822", "url": "https://www.ncbi.nlm.nih.gov/gene/100157822", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157822", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157822", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WNSVNDP", "url": "https://omabrowser.org/oma/group/WNSVNDP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TUM7", "url": "https://www.orthodb.org/?gene=A0A4X1TUM7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28658", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28658", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28658:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28658:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13347", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13347", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001928880", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928880", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TRW3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRW3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TRW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRW3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TUM7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TUM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELGGPWAWLLGLPTAVVYGSLALFVSVLHNVFLLYYVDTFVSVYKINKAAFWVGETVFLLWNSLNDPLFGWLSDRQFLSSQPWSGAGLSSRAVVLARVRALGWHGPLLALSFLAFWVPWAPAGLQFLLCLCLYDGFLTLVDLHHHALLADLALSAHDRTHLNFYCSLFSAAGSLSVFASYAFWNKEDFSSFRAFCVALAACSGLGFVGATRLLRRRVEAAGREPGCPSLAVDGGLGEEELLVGGKEAGSITLSQYLRQLARHRNFLWFVGMDLVQVFHCHFNSNFFPLFLEHLLSDHISLSTGSFLLGISYVAPHLNNLYFLPLCRRWGVYAVVRGLFLLKLGLSLLMLLAGPDHPGLLCLFIASNRVFTEGTCKLLTLVVTDLVDEDLVLNHRKQAASALLFGMVALVTKPGQTFAPLLGTWLLCFYTGHDLFQQPPLTPVGSAQPWPEPPAPPPAQAPALRQGCFYLLVLVPITCALLQLFTWSQFTLHGRRLHMVKAQRQNLARAQTLDVKTV", "length": 517, "header": "tr|A0A4X1TUM7-1|A0A4X1TUM7_PIG Isoform 1 of Major facilitator superfamily domain containing 13A OS=Sus scrofa OX=9823 GN=MFSD13A PE=4 SV=1 CANONICAL=A0A4X1TUM7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TRW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUM7/entry#A0A4X1TRW3-1", "sequence": { "sequence": "MELGGPWAWLLGLPTAVVYGSLALFVSVLHNVFLLYYVDTFVSVYKINKAAFWVGETVFLLWNSLNDPLFGWLSDRQFLSSQPCLGEEELLVGGKEAGSITLSQYLRQLARHRNFLWFVGMDLVQVFHCHFNSNFFPLFLEHLLSDHISLSTGSFLLGISYVAPHLNNLYFLPLCRRWGVYAVVRGLFLLKLGLSLLMLLAGPDHPGLLCLFIASNRVFTEGTCKLLTLVVTDLVDEDLVLNHRKQAASALLFGMVALVTKPGQTFAPLLGTWLLCFYTGHDLFQQPPLTPVGSAQPWPEPPAPPPAQAPALRQGCFYLLVLVPITCALLQLFTWSQFTLHGRRLHMVKAQRQNLARAQTLDVKTV", "length": 366, "header": "tr|A0A4X1TRW3-1|A0A4X1TUM7_PIG Computationally mapped isoform of Major facilitator superfamily domain containing 13A OS=Sus scrofa OX=9823 GN=MFSD13A PE=4 SV=1 CANONICAL=A0A4X1TUM7-1" }, "locus": { "chromosome": "14", "start_pos": 113478148, "end_pos": 113472273, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086307.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086307.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073333.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073333.1" } ] } }, { "isoform_ac": "A0A4X1TUM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUM7/entry#A0A4X1TUM7-1", "sequence": { "sequence": "MELGGPWAWLLGLPTAVVYGSLALFVSVLHNVFLLYYVDTFVSVYKINKAAFWVGETVFLLWNSLNDPLFGWLSDRQFLSSQPWSGAGLSSRAVVLARVRALGWHGPLLALSFLAFWVPWAPAGLQFLLCLCLYDGFLTLVDLHHHALLADLALSAHDRTHLNFYCSLFSAAGSLSVFASYAFWNKEDFSSFRAFCVALAACSGLGFVGATRLLRRRVEAAGREPGCPSLAVDGGLGEEELLVGGKEAGSITLSQYLRQLARHRNFLWFVGMDLVQVFHCHFNSNFFPLFLEHLLSDHISLSTGSFLLGISYVAPHLNNLYFLPLCRRWGVYAVVRGLFLLKLGLSLLMLLAGPDHPGLLCLFIASNRVFTEGTCKLLTLVVTDLVDEDLVLNHRKQAASALLFGMVALVTKPGQTFAPLLGTWLLCFYTGHDLFQQPPLTPVGSAQPWPEPPAPPPAQAPALRQGCFYLLVLVPITCALLQLFTWSQFTLHGRRLHMVKAQRQNLARAQTLDVKTV", "length": 517, "header": "tr|A0A4X1TUM7-1|A0A4X1TUM7_PIG Isoform 1 of Major facilitator superfamily domain containing 13A OS=Sus scrofa OX=9823 GN=MFSD13A PE=4 SV=1 CANONICAL=A0A4X1TUM7-1" }, "locus": { "chromosome": "14", "start_pos": 113478148, "end_pos": 113472273, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011577.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011577.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011275.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011275.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TRW3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TRW3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157822", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157822", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2U3N0-1", "protein_name": "Major facilitator superfamily domain containing 13A", "gene_name": "MFSD13A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MELNADPINMGLRLLACLFHLPTAVIYGSLSLFVSILHNVFLLYYVDTFVSVYKIDKLSFWIGETVFLIWNSLNDPLFGWLSDRVFLSTQQPGAEISSPEVVLKRLRALSHNGPLFAISFLAFWVAWAHPGLQFLLCLCMYDSFLTMVDLHHNALLADLAVSAKDRTSLNFYCSFFSAIGSLSVFMSYAVWNKEDFFSFRIFCIVLAFCSIVGFTLSTQLLRQRFETDGKAKWDQESTLKELYIEKLSVPQEKRITLVEYLQQLSRHRNFLWFVCMNLIQVFHCHFNSNFFPLFLEHLLSDKISVSTGSFLLGISYIAPHLNNLYFLSLCRRWGVYAVVRGLFFLKLALSVVMLLAGPDQVYLLCIFIASNRVFTEGTCKLLNLVVTDLVDEDLVLNRRKQAASALLFGMVALVTKPGQTFAPLIGTWLLCVYTGYDIFQRNPLSNVVSAQPKLESDTILEPTLRQGCFYLLVFVPITCALLQLLSWTQFSLHGKRLQMVKAQRQGLMQGRAPEIKMI", "length": 518 }, "evidence": [ { "id": "A0A4X1TUM7", "url": "https://omabrowser.org/oma/group/A0A4X1TUM7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0KYP0-1", "protein_name": "Major facilitator superfamily domain containing 13A", "gene_name": "Slc68a1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARTSRRRGTTSLGLRHPAAGRPTRVAWRRRGPGPYHGSSGVLAAPCSGPPAGCRSCGSGWVAAAEGRAGSSSAALGGLAASSFLQMGVSLFSSFSPCLPMKSRDEDGRSGNGAEAPPAAMGLDWPPAWLLGLPTAVVYGSLAFFTTILHNVFLLYYVDTFVSVYKINKVSFWVGETVFLLWNSFNDPLFGWLSDRRFLSSQPRSGAGLSSRDVVLTRVRALGWHGPLLALSFLAFWVPWAPAGLQFLLCLCLYDGFLTLVDLHHHALLADLALSAHDRTHLNFYCSLFSAAGAMSVFASYAFWNKEDFSSFRAFCVVLAAGSGLGFLGATQLLKRRIEATRKDRGCPGLVMDGGVCEEEPLVGGEEAGSITLGQYLRQLAHHQNFLWFVGMDLVQVFHCHFNSNFFPLFLEHLLSDHISLSTGSFLLGISYVAPHLNNLYFLPLCRRWGVYAVVRGLLLLKLSLSLLMLLAGPDHPGLLCFFIASNRVFTEGTCKLLTLVVTDLVDEDLVLNHRKQAASALLFGMVALVTKPGQTFAPLLGTWLLCFYTGHDLFQQPPVTSVGSVQPWPEPPAPAPVQAPTLRQGCFYLLVLVPIICALLQLFTWSQFTLHGRRLRMVKAQRQNLAQIHTLNIKMV", "length": 637 }, "evidence": [ { "id": "A0A4X1TUM7", "url": "https://omabrowser.org/oma/group/A0A4X1TUM7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HXW7-1", "protein_name": "Transmembrane protein 180", "gene_name": "Mfsd13a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGLDWPQAWLLGLPTAVVYGSLALFTSILHNVFLLYYVDTFVSVYKINKMSFWIGETVFLLWNSFNDPLFGWLSDRQFLSSQSRSGAGLSSRDVVLTRVRALSWHGPLLALSFLAFWVPWAPAGLQFLLCLCLYDGFLTLVDLHHHALLADLALSAHDRTHLNFYCSLFSAAGSMSVFASYAFWNKEDFSSFRAFCVVLAAGSGLGFLGATQLLRRRIEATRRDKGCPALVVDGGVCEEELLVGGEEAGSITLGQYLRQLARHQNFLWFVGMDLVQVFHCHFNSNFFPLFLEHLLSDHISLSTGSFLLGISYVAPHLNNLYFLPLCRRWGVYAVVRGLFLLKLGLSLLMLLAGPDRPGLLCFFIASNRVFTEGTCKLLTLVVTDLVDEDLVLNHRKQAASALLFGMVALVTKPGQTFAPLLGTWLLCFYTGHDLFQQPPVTTVGSVQPWPEPPAPAPAQAPTLRQGCFYLLVLVSISCALLQLFTWSRFTLHGRRLRVVKAQRQNLAQIHTLDIKTV", "length": 517 }, "evidence": [ { "id": "A0A4X1TUM7", "url": "https://omabrowser.org/oma/group/A0A4X1TUM7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q14CX5-1", "protein_name": "Solute carrier family 68 member 1", "gene_name": "SLC68A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGLGQPQAWLLGLPTAVVYGSLALFTTILHNVFLLYYVDTFVSVYKINKMAFWVGETVFLLWNSLNDPLFGWLSDRQFLSSQPRSGAGLSSRAVVLARVQALGWHGPLLALSFLAFWVPWAPAGLQFLLCLCLYDGFLTLVDLHHHALLADLALSAHDRTHLNFYCSLFSAAGSLSVFASYAFWNKEDFSSFRAFCVTLAVSSGLGFLGATQLLRRRVEAARKDPGCSGLVVDSGLCGEELLVGSEEADSITLGRYLRQLARHRNFLWFVSMDLVQVFHCHFNSNFFPLFLEHLLSDHISLSTGSILLGLSYVAPHLNNLYFLSLCRRWGVYAVVRGLFLLKLGLSLLMLLAGPDHLSLLCLFIASNRVFTEGTCKLLTLVVTDLVDEDLVLNHRKQAASALLFGMVALVTKPGQTFAPLLGTWLLCFYTGHDLFQQSLITPVGSAHPWPEPPAPAPAQAPTLRQGCFYLLVLVPITCALLQLFTWSQFTLHGRRLHMVKAQRQNLSQAQTLDVKMV", "length": 517 }, "evidence": [ { "id": "A0A4X1TUM7", "url": "https://omabrowser.org/oma/group/A0A4X1TUM7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q58CT4-1", "protein_name": "Solute carrier family 68 member 1", "gene_name": "SLC68A1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLGGPWAWLLGLPTAVVYGSLALFVSVLHNVFLLYYVDTFVSVYKIDKAAFWVGETVFLLWNSLNDPLFGWLSDRQFLSSQPRSGAGLSSRAVVLARVRALGWHGPLLALSFLAFWVPWAPAGLQFLLCLCLYDGFLTLVDLHHHALLADLALSAHDRTHLNFYCSLFSAAGSLSVFASYAFWNKEDFSSFRAFCLALATGSGLGFVGAARLLRRRVEAAGREPGCPAMAVNDGLCEEELLVGGEEAGSITLGQYLQQLARHRNFLWFVGMDLVQVFHCHFNSNFFPLFLEHLLSDHISLSTGSFLLGISYVAPHLNNLYFLPLCRRWGVYAVVRGLFLLKLGLSLLMLLAGPDHPGLLCLFIASNRVFTEGTCKLLTLVVTDLVDEDLVLNHRKQAASALLFGMVALVTKPGQTFAPLLGTWLLCFYTGHDLFQQHPPAPVGSAQPWPEPPAPPPAQAPPLRQGCFYLLVLVPIACALLQLFTWSQFTLHGRRLHMVKAQRQSLSRAQTLDVKMV", "length": 517 }, "evidence": [ { "id": "A0A4X1TUM7", "url": "https://omabrowser.org/oma/group/A0A4X1TUM7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PDE8-1", "protein_name": "Solute carrier family 68 member 1", "gene_name": "Slc68a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLDWPQAWLLGLPIAVVYGSLALFTSILHNVFLLYYVDTFVSVYKINKVSFWVGETVFLLWNSFNDPLFGWLSDRQLLSSQPRSGAGLSSRDVVLTRVRALGWHGPLLALSFLAFWVPWAPAGLQFLLCLCLYDGFLTLVDLHHHALLADLALSSHDRTHLNFYCSLFSAAGSLSVFASYAFWNKEDFSSFRAFCVVLAAGSGLGFLGTTQLLKRQIEATRRDRGCPGLDLDGGVCEEEPPVGGEEAGNITLGQYLRQLARHQNFLWFVGMDLVQVFHCHFNSNFFPLFLEHLLSDHISLSTGSFLLGISYVAPHLNNLYFLPLCRRWGVYAVVRGLFLLKLSLSLLMLLAGPDHPGLLCFFIASNRVFTEGTCKLLTLVVTDLVDEDLVLNHRKQAASALLFGMVALVTKPGQTFAPLLGTWLLCFYTGHDLFQQSPMTPVGSVRPWPELPAPAPAPAQAPTLRQGCFYLLVFVPITCALLQLFTWSQFTLHGRRLRTVKAQRQNLAQIHTLNIKMV", "length": 519 }, "evidence": [ { "id": "A0A4X1TUM7", "url": "https://omabrowser.org/oma/group/A0A4X1TUM7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TUM7", "url": 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"title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TS87-1", "uniprot_ac": "A0A4X1TS87", "uniprot_id": "A0A4X1TS87_PIG", "mass": { "chemical_mass": 23799.0, "monoisotopic_mass": 23799.0 }, "refseq": { "ac": "XP_003355891", "name": "Fanconi anemia core complex-associated protein 24", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355891" }, "gene_names": [ { "name": "FAAP24", "type": "recommended", "evidence": [ { "id": "A0A4X1TS87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TS87" } ] }, { "name": "FAAP24", "type": "synonym", "evidence": [ { "id": "XP_003355891", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355891" } ] } ], "protein_names": [ { "name": "Fanconi anemia core complex-associated protein 24", "type": "recommended", "evidence": [ { "id": "A0A4X1TS87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TS87/entry#names_and_taxonomy" } ] }, { "name": 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Regulates FANCD2 monoubiquitination upon DNA damage. Induces chromosomal instability as well as hypersensitivity to DNA cross-linking agents, when repressed. Targets FANCM/FAAP24 complex to the DNA, preferentially to single strand DNA.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TS87", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TS87#function" }, { "database": "UniProtKB", "id": "ARBA00059644", "url": "https://www.uniprot.org/uniprotkb/ARBA00059644#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TS87", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TS87" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAAP24", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TS87", "locus": { "chromosome": "6", "start_pos": 42819623, "end_pos": 42815528, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040905", "url": "https://www.ensembl.org/id/ENSSSCG00000040905" } ] } } ], "crossref": [ { "id": "A0A4X1TS87", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TS87", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd20076", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20076", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100621643", "url": "https://www.ncbi.nlm.nih.gov/gene/100621643", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010994", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010994", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026985", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026985", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040646", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040646", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041663", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041663", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100621643", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621643", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GPVHVPF", "url": "https://omabrowser.org/oma/group/GPVHVPF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TS87", "url": "https://www.orthodb.org/?gene=A0A4X1TS87", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31786", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31786", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31786:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31786:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12826", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12826", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17949", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17949", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6783310", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6783310", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9833482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9833482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003355891", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355891", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TS87", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TS87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TS87-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TS87-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGNAPDGTGPVHVPFGHIVANEKWRGSQLAQGMQGKIKLIFEDGLTPVDFYLPSRSCILYITEADLVAGNGYRKRLVRVRNSTKLQAIVVVEKTQMSEQYFPAAQKFTVLDLGMVLLPVANQIEAACLITQLVQEQTKEPSKNPVLRRKRAVISEPALLRTVQRIPGVGKVKAPLLLQRFPSIQQLSNASVQELEPVVGQAVARHVHAFFTQPR", "length": 215, "header": "tr|A0A4X1TS87-1|A0A4X1TS87_PIG Isoform 1 of Fanconi anemia core complex-associated protein 24 OS=Sus scrofa OX=9823 GN=FAAP24 PE=4 SV=1 CANONICAL=A0A4X1TS87-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TS87-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TS87/entry#A0A4X1TS87-1", "sequence": { "sequence": "MEGNAPDGTGPVHVPFGHIVANEKWRGSQLAQGMQGKIKLIFEDGLTPVDFYLPSRSCILYITEADLVAGNGYRKRLVRVRNSTKLQAIVVVEKTQMSEQYFPAAQKFTVLDLGMVLLPVANQIEAACLITQLVQEQTKEPSKNPVLRRKRAVISEPALLRTVQRIPGVGKVKAPLLLQRFPSIQQLSNASVQELEPVVGQAVARHVHAFFTQPR", "length": 215, "header": "tr|A0A4X1TS87-1|A0A4X1TS87_PIG Isoform 1 of Fanconi anemia core complex-associated protein 24 OS=Sus scrofa OX=9823 GN=FAAP24 PE=4 SV=1 CANONICAL=A0A4X1TS87-1" }, "locus": { "chromosome": "6", "start_pos": 42818619, "end_pos": 42815893, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028553.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028553.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023493.2", "url": "https://www.ensembl.org/id/ENSSSCP00000023493.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TS87", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TS87" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100621643", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621643", "resource": "KEGG Pathway" }, { "id": "R-SSC-6783310", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6783310", "resource": "Reactome", "description": "Fanconi Anemia Pathway" }, { "id": "R-SSC-9833482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9833482", "resource": "Reactome", "description": "PKR-mediated signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5P406-1", "protein_name": "Fanconi anemia core complex associated protein 24", "gene_name": "FAAP24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAKGDVPAAAGSVVVPYGHVVGNEKWRGSEVARRLQGKTKLIFEDGLGLVDFHLSNRICVLYISEADLVAGDEFKRRVVRFRNASSLGGIVIVEKTPITEQYFSAVQKLVVLQLGMVLLPVANQGEASQLITQLVREQSKDHTSNPFLRKQCSQLAEASVFRTVQQIPGVGKTKALLLLQQFGSIHQICNASVKELELVVGQTVAQQIHTFLGS", "length": 215 }, "evidence": [ { "id": "A0A4X1TS87", "url": "https://omabrowser.org/oma/group/A0A4X1TS87/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZE71-1", "protein_name": "Fanconi anemia core complex-associated protein 24", "gene_name": "Faap24", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MERNPPGGTGPVHVPLGHIVANEKWRGSQLAQELQGKVRLIFEEGLASTDFYLSSKSCILYITEADLVAGHGYKKRLARFRNSAHLQGIVIVEKTQMSEQYFPAAQKFTVLDLGMVLLPVASQSEASCLIFQLVQEQTREPSKNPFLRKKRSMLSESSLVQTVQQIPGVGKVKAPLLLQKFPSIQQLSNASTQELEEVVGRTVAQQIHTFFTQPKRQQSWH", "length": 221 }, "evidence": [ { "id": "A0A4X1TS87", "url": "https://omabrowser.org/oma/group/A0A4X1TS87/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2KHY5-1", "protein_name": "Fanconi anemia core complex-associated protein 24", "gene_name": "FAAP24", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MESNPPDSTGPMHVPFGHIVANEKWRGSQLAQGMQGKIKLVFEDGLTPVDFYLSSKSCILYITEAELVAGNGYRKRLVRVRNSNKLQGIVVVEKTQMSEQYFPAVQKFTVLDLGMVLLPVASQMEASCLIIQLVQEQTREPSKNPFLRKKRALVSEPALLRSVQQIPGVGKVKAPLLLQRFPSIQQLSNASLRELEAVVGPAAAQRIHAFFSQPR", "length": 215 }, "evidence": [ { "id": "A0A4X1TS87", "url": "https://omabrowser.org/oma/group/A0A4X1TS87/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BHL6-1", "protein_name": "Fanconi anemia core complex-associated protein 24", "gene_name": "Faap24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERNPPDGTGPVHVPLGHIVASEKWRGSQLAQEMQGKVRLIFEEGLASADFYLSSKSCILYVTEADLVAGHGYRKRLARFRNSSHLQGIIIVEKTQMSEQYFPAVQKFTVLDLGMVLLPVASQSEASCLIIHLVQEQTREPSKNPFLRKKRSMLSELSLVQTVQQIPGVGKVKAPLLLQKFPSIQQLSNASVQELEEVVGPAAAQQIHTFFTQPKRQQPRS", "length": 221 }, "evidence": [ { "id": "A0A4X1TS87", "url": "https://omabrowser.org/oma/group/A0A4X1TS87/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BTP7-1", "protein_name": "Fanconi anemia core complex-associated protein 24", "gene_name": "FAAP24", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEKNPPDDTGPVHVPLGHIVANEKWRGSQLAQEMQGKIKLIFEDGLTPDFYLSNRCCILYVTEADLVAGNGYRKRLVRVRNSNNLKGIVVVEKTRMSEQYFPALQKFTVLDLGMVLLPVASQMEASCLVIQLVQEQTKEPSKNPLLGKKRALLLSEPSLLRTVQQIPGVGKVKAPLLLQKFPSIQQLSNASIGELEQVVGQAVAQQIHAFFTQPR", "length": 215 }, "evidence": [ { "id": "A0A4X1TS87", "url": "https://omabrowser.org/oma/group/A0A4X1TS87/", "database": "OMA" } ], "glygen_name": "Human", "common_name": 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"KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QEVICYE", "url": "https://omabrowser.org/oma/group/QEVICYE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TTH9", "url": "https://www.orthodb.org/?gene=A0A4X1TTH9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11362", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11362", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11362:SF151", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11362:SF151", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01161", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01161", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5674135", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5674135", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5675221", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5675221", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003132938", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132938", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TTH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TTH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTH9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7G5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7G5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7G5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"database": "Ensembl Transcript", "id": "ENSSSCT00000010797.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010797.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010514.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010514.2" } ] } }, { "isoform_ac": "A0A8W4F7G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTH9/entry#A0A8W4F7G5-1", "sequence": { "sequence": "MPEVDERPQHPLQVKYGGAEVDELGKVLTPTQVKSRPTSITWDGLNPDKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDGPLKCDEPILSNRSGDHRGKFKVASFRKKYQLGAPVAGTCYQAEWDDYVPKLYEQLSGK", "length": 174, "header": "tr|A0A8W4F7G5-1|A0A4X1TTH9_PIG Computationally mapped isoform of Phosphatidylethanolamine-binding protein 1 OS=Sus scrofa OX=9823 GN=PEBP1 PE=1 SV=1 CANONICAL=A0A4X1TTH9-1" }, "locus": { "chromosome": "14", "start_pos": 34530060, "end_pos": 34524660, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092418.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092418.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075206.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075206.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F7G5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7G5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518336", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518336", "resource": "KEGG Pathway" }, { "id": "R-SSC-5674135", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5674135", "resource": "Reactome", "description": "MAP2K and MAPK activation" }, { "id": "R-SSC-5675221", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5675221", "resource": "Reactome", "description": "Negative regulation of MAPK pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZTA5-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "PEBP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPVELGLWDGPLSLSEVEQKPAHPLRVKYGSVEIDELGKVLTPTQVQHRPTSIEWDGCDPQKLYTLVLTDPDAPSRKDPKFREWHHFLVTNMKGNDVGSGTVLSDYVGSGPPKGTGLHRYVWLVYEQPKQLTCNEPILSNRSGDKRGKFKVAAFRSKYGLGVPVAGTCYQAEWDDYVPKLYEQLSGK", "length": 187 }, "evidence": [ { "id": "A0A4X1TTH9", "url": "https://omabrowser.org/oma/group/A0A4X1TTH9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3GU60-1", "protein_name": "Phosphatidylethanolamine-binding protein 1", "gene_name": "Pebp1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPADISQWSGPLSLQEVDERPQHALRVAYAGVEVDELGKVLTPTQVKNRPSSISWDGLDPGKLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGKVLSDYVGSGPPSGTGLHRYVWLVYEQDKPLNCDEPILSNRSGDHRGKFKVAAFRKKYHLGAPVAGTCYQAEWDDYVPKLYEQLSGK", "length": 187 }, "evidence": [ { "id": "A0A4X1TTH9", "url": "https://omabrowser.org/oma/group/A0A4X1TTH9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P13696-1", 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"MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESHRPPIGSISSMEVNVDTLEQVELIDLGDQDGADVFLPWEDPPPTPQTAGVDDHPEEPGLPLPTPDRTTSRTSSSSSDTSTNPHSPDPSDGGADTPLAQSDEEEDGGDSRAEPGACS", "length": 160, "header": "tr|A0A4X1TTI0-1|A0A4X1TTI0_PIG Isoform 1 of Dysbindin domain containing 2 OS=Sus scrofa OX=9823 GN=DBNDD2 PE=3 SV=1 CANONICAL=A0A4X1TTI0-1" }, "locus": { "chromosome": "17", "start_pos": 47727280, "end_pos": 47725140, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029861.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029861.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025873.1", "url": "https://www.ensembl.org/id/ENSSSCP00000025873.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", 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factor 4 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1TTP3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TTP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTP3/entry#A0A4X1TTP3-1", "sequence": { "sequence": "MHKSSWHSRRRGRRSQQQNTWFRQPGSHERNNAGAQQSPQGSSRSDDEAPSTSSSSAGSSSVPDLPGYYFDPEKNRYFRLLPGHNNCNPLTKESIRQKEMESKRLQLLEEEDRQGKKIARLGFNASSLLQKSRLGFLNVTSYCRLAHELRVSCMQRKKVQIQSSDPSALASDRFNLILADTNSDRLFTVNDVKVGGSKYGIINLHGLKTPTLRVHMHENLYFTNRKVNAVCWASLNHLDSHILLCLMGIAETPGCATLLPASLFVSSHPGGDRPGMLCSFRIPGAWSCAWSLNIQANNCFSTGLSRRVLVTSVVTGHRQSFGTNSDVLAQQFALTAPLLFNGCRSGEIFAIDLRCRNQGKGWKATHLFHDSAVTSVRILQEEQCLMASDMAGTIKLWDLRNNKCVRQYEGHVNEYAHLPLHVHEEEGIVVAVGQDCYTRIWSLHDARLLRTIPSPHPTSKADIPSVAFSSRLGGFQGAPGLLMAVRQDLYCFSYN", "length": 495, "header": "tr|A0A4X1TTP3-1|A0A4X1TTP3_PIG Isoform 1 of DDB1- and CUL4-associated factor 4 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1TTP3-1" }, "locus": { "chromosome": "7", "start_pos": 96318403, "end_pos": 96300063, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025390.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025390.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021516.3", "url": "https://www.ensembl.org/id/ENSSSCP00000021516.3" } ] } }, { "isoform_ac": "A0A4X1TTQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TTP3/entry#A0A4X1TTQ9-1", "sequence": { "sequence": "MHKSSWHSRRRGRRSQQQNTWFRQPGSHERNNAGAQQSPQGSSRSDDEAPSTSSSSAGSSSVPDLPGYYFDPEKNRYFRLLPGHNNCNPLTKESIRQKEMESKRLQLLEEEDRQGKADTNSDRLFTVNDVKVGGSKYGIINLHGLKTPTLRVHMHENLYFTNRKAPLLFNGCRSGEIFAIDLRCRNQGKGWKATHLFHDSAVTSVRILQEEQCLMASDMAGTIKLWDLRNNKCVRQYEGHVNEYAHLPLHVHEEEGIVVAVGQDCYTRIWSLHDARLLRTIPSPHPTSKADIPSVAFSSRLGGFQGAPGLLMAVRQDLYCFSYN", "length": 324, "header": "tr|A0A4X1TTQ9-1|A0A4X1TTQ9_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1TTP3-1" }, "locus": { "chromosome": "7", "start_pos": 96318403, "end_pos": 96300063, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076321.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076321.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068709.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068709.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": 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0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1TUA3-1", "uniprot_ac": "A0A4X1TUA3", "uniprot_id": "A0A4X1TUA3_PIG", "mass": { "chemical_mass": 21808.0, "monoisotopic_mass": 21808.0 }, "refseq": {}, "gene_names": [ { "name": "CIB4", "type": "recommended", "evidence": [ { "id": "A0A4X1TUA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUA3" } ] } ], "protein_names": [ { "name": "Calcium and integrin-binding protein 1", "type": "recommended", "evidence": [ { "id": "A0A4X1TUA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUA3/entry#names_and_taxonomy" } ] }, { "name": "Calmyrin", "type": "synonym", "evidence": [ { "id": "A0A4X1TUA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUA3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TUA3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUA3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CIB4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUA3", "locus": { "chromosome": "3", "start_pos": 112457138, "end_pos": 112406908, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008564", "url": "https://www.ensembl.org/id/ENSSSCG00000008564" } ] } } ], "crossref": [ { "id": "A0A4X1TUA3", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TUA3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051433", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051433", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CKVFSHN", "url": "https://omabrowser.org/oma/group/CKVFSHN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45791", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45791", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45791:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45791:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1TUA3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TUA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUA3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQCLRYQMHWEDLEEYQALTFLTRNEILCIHDSFLKLCPPGKYYKEATLTMDQVSSLPALRVNPFRDRICRVFSHNDVFCFEDVLGMASVFSEQACPSLKIEYAFRIYDFNENGFIDEEDLQRIILRLLNSNDMSEDLLTDLTSRVLDESDLDNDNMLSFSEFEHAMAKSPDFMNSFRIHFWGY", "length": 185, "header": "tr|A0A4X1TUA3-1|A0A4X1TUA3_PIG Isoform 1 of Calcium and integrin-binding protein 1 OS=Sus scrofa OX=9823 GN=CIB4 PE=4 SV=1 CANONICAL=A0A4X1TUA3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TUA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUA3/entry#A0A4X1TUA3-1", "sequence": { "sequence": "MGQCLRYQMHWEDLEEYQALTFLTRNEILCIHDSFLKLCPPGKYYKEATLTMDQVSSLPALRVNPFRDRICRVFSHNDVFCFEDVLGMASVFSEQACPSLKIEYAFRIYDFNENGFIDEEDLQRIILRLLNSNDMSEDLLTDLTSRVLDESDLDNDNMLSFSEFEHAMAKSPDFMNSFRIHFWGY", "length": 185, "header": "tr|A0A4X1TUA3-1|A0A4X1TUA3_PIG Isoform 1 of Calcium and integrin-binding protein 1 OS=Sus scrofa OX=9823 GN=CIB4 PE=4 SV=1 CANONICAL=A0A4X1TUA3-1" }, "locus": { "chromosome": "3", "start_pos": 112456996, "end_pos": 112407107, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009370.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009370.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009130.2", "url": "https://www.ensembl.org/id/ENSSSCP00000009130.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin 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"https://www.ncbi.nlm.nih.gov/gene/100512672", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020864", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020864", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057450", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057450", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512672", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512672", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CQCGPRF", "url": "https://omabrowser.org/oma/group/CQCGPRF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TV71", "url": "https://www.orthodb.org/?gene=A0A4X1TV71", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15564", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15564", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15564:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15564:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01823", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01823", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19052", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19052", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25415", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25415", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005667971", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667971", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TV71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TV71-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV71-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIWRSRAGAELFSLMALWEWIALSLHCWVLAVAAVSDQHATSPFDWLLSDKGPFHRSQEYTDFVDRSRQGFSTRYKIYREFGRWKVNNLAVERRNFLGSPLPLAPEFFRNIRLLGRRPTLQQITENLIKKYGTHFLLSATLGGEESLTIFVDKRKLSKRSEGSDSSTNSSSVTLETLHQLAASYFIDRDSTLRRLHHIQIASTAIKVTETRTGPLGCSNYDNLDSVSSVLVQSPENKIQLQGLQVLLPDYLQERFVQAALSYIACNSEGEFICKDNDCWCQCGPKFPECNCPSMDIQAMEENLLRTTETWKAYNMDFEESDEFKFFMKRLPMNYFLNTSTIMHLWTMDSNFQRRYEQLENSMKQLFLKAQKIVHKLFSLSKRCHKQPLISLPRQRTSTYWLTRIQSFLYCNENGLLGSFSEETHSCTCPNDQVVCTTFLPCTVGDAAACLTCAPDNRTRCGACNTGYMLSQGLCKPEVAESTDHYIGFETDLQDLEMKYLLQKTDRRIEVHAIFISNDMRLNSWFDPSWRKRMLLTLKSNKYKSSLVHMILGLSLQICLTKNSTLEPVLAVYVNPFGGSHSESWFMPVNENSFPDWERTKLDLPLQCYNWSLTLGNKWKTFFETVHIYLRSRIKSNGPNGNESIYYEPLEFIDPSRNLGYMKINNIQVFGYSMHFDPEAIRDLILQLDYPYTQGSQDSALLQLLEIRDRVNKLSPPGQRRLDLFSCLLRHRLKLSTSEVVRIQAALQAFNAKLPNTVDYDTTKLCS", "length": 766, "header": "tr|A0A4X1TV71-1|A0A4X1TV71_PIG Isoform 1 of BMP/retinoic acid inducible neural specific 3 OS=Sus scrofa OX=9823 GN=BRINP3 PE=3 SV=1 CANONICAL=A0A4X1TV71-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TV71-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV71/entry#A0A4X1TV71-1", "sequence": { "sequence": "MIWRSRAGAELFSLMALWEWIALSLHCWVLAVAAVSDQHATSPFDWLLSDKGPFHRSQEYTDFVDRSRQGFSTRYKIYREFGRWKVNNLAVERRNFLGSPLPLAPEFFRNIRLLGRRPTLQQITENLIKKYGTHFLLSATLGGEESLTIFVDKRKLSKRSEGSDSSTNSSSVTLETLHQLAASYFIDRDSTLRRLHHIQIASTAIKVTETRTGPLGCSNYDNLDSVSSVLVQSPENKIQLQGLQVLLPDYLQERFVQAALSYIACNSEGEFICKDNDCWCQCGPKFPECNCPSMDIQAMEENLLRTTETWKAYNMDFEESDEFKFFMKRLPMNYFLNTSTIMHLWTMDSNFQRRYEQLENSMKQLFLKAQKIVHKLFSLSKRCHKQPLISLPRQRTSTYWLTRIQSFLYCNENGLLGSFSEETHSCTCPNDQVVCTTFLPCTVGDAAACLTCAPDNRTRCGACNTGYMLSQGLCKPEVAESTDHYIGFETDLQDLEMKYLLQKTDRRIEVHAIFISNDMRLNSWFDPSWRKRMLLTLKSNKYKSSLVHMILGLSLQICLTKNSTLEPVLAVYVNPFGGSHSESWFMPVNENSFPDWERTKLDLPLQCYNWSLTLGNKWKTFFETVHIYLRSRIKSNGPNGNESIYYEPLEFIDPSRNLGYMKINNIQVFGYSMHFDPEAIRDLILQLDYPYTQGSQDSALLQLLEIRDRVNKLSPPGQRRLDLFSCLLRHRLKLSTSEVVRIQAALQAFNAKLPNTVDYDTTKLCS", "length": 766, "header": "tr|A0A4X1TV71-1|A0A4X1TV71_PIG Isoform 1 of BMP/retinoic acid inducible neural specific 3 OS=Sus scrofa OX=9823 GN=BRINP3 PE=3 SV=1 CANONICAL=A0A4X1TV71-1" }, "locus": { "chromosome": "10", "start_pos": 3367269, "end_pos": 2986379, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052903.1", "url": "https://www.ensembl.org/id/ENSSSCT00000052903.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042003.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042003.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TV71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV71" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512672", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512672", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5NVI6-1", "protein_name": "BMP/retinoic acid inducible neural specific 3", "gene_name": "BRINP3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MIWRCSAGAELFSLMALWEWIALSLHCWVLAVAAVSDQHATSPFDWLLSDKGPFHRSQEYTDFVDRSRQGFSTRYKIYREFGRWKVNNLAVERRNFLGSPLPLAPEFFRNIRLLGRRPTLQQITENLIKKYGTHFLLSATLGGEESLTIFVDKRKLSKRSDGSDPSTNSSVVTLETLHQLAASYFIDRDSTLRRLHHIQIASTAIKVTETRTGPLGCSNYDNLDSVSSVLVQSPENKIQLQGLQVILPEYLQEHFVQAALSYIACNSEGEFICKDNDCWCQCGPKFPECNCPYMDIQAMEENLLRISETWNAYNSEFEESDEFKLFMKRLPMNYFLNTSTVMHLWTMDSNFQRRYEQLENSMKQLFLKAQKIVHKLFGLSKRCHKQPLIRMPKQRSSNYWLNRIQSFLYCNENGLLGSFSEETHTCTCPNDQVACHGFLPCTVGDGSACLSCAPDNRTRCGSCNAGYMLSQGICKPEVAESTEHYIGFETDLQDLEMKYLLQKTDRRIEVHAIFISNDMRLNNWFDPSWRKRMLLTLKSNKYKSSLVHMILGLSLQICLTKNSTLEPVLAVYVNPFGGSHSESWFMPVNENNFPDWERTKLDLPLQCYNWTLTLGNKWKTFFETVHIYLRSRIKSNGPNGNESIYYEPLEFIDPSRNLGYMKINNIQVFGYSMHFDPEAIRDLILQLDYPYTQGSQDSALLQLLEIRDRVNKLSPPGQRRLDLFSCLLRHRLKLSTSEVVRIQSALQAFNAKLPNTVDYDTTKLCS", "length": 766 }, "evidence": [ { "id": "A0A4X1TV71", "url": "https://omabrowser.org/oma/group/A0A4X1TV71/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1N0Y7-1", "protein_name": "BMP/retinoic acid inducible neural specific 3", "gene_name": "BRINP3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MIWRSRAGAELFSLMAPWEWIALSLHCWVLAVAAVSDQHATSPFDWLLSDKGPFHRSQEYTDFVDRSRQGFSTRYKIYREFGRWKVNNLAVERRNFLGSPLPLAPEFFRNIRLLGRRPTLQQITENLIKKYGTHFLLSATLGGEESLTIFVDKRKLSKRSEGSDPSANSSSVTLETLHQLAASYFIDRDSTLRRLHHIQIASTAIKVTETRTGPLGCSNYDNLDSVSSVLVQSPENKIQLQGLQVLLPDYLQERFVQAALSYIACNSEGEFICKDNDCWCHCGPKFPECNCPSMDIQAMEENLLRITETWKAYNIDFEESDEFKFFMKRLPMNYFLNTSTVMHLWTMDSNFQRRYEQLENSMKQLFLKAQKIVHKLFSLSKRCHKQPLISLPRQRTSTYWLTRIQSFLYCNENGLLGSFSEETHSCTCPNDQVVCTAFLPCTVGDAAACLSCAPDNRTRCGTCNTGYMLSQGFCKPEVAESTDHYIGFETDLQDLEMKYLLQKTDRRLEVHAIFISNDMRLNSWFDPSWRKRMLLTLKSNKYKSSLVHMILGLSLQICLTKNSTLEPVLAVYINPFGGSHSESWFMPVNENSFPDWERTKLDLPLQCYNWSLTLGNKWKTFFETVHIYLRSRIKSNGPNGNESIYYEPLEFIDPSRNLGYMKINNIQVFGYSMHFDPEAIRDLILQLDYPYTQGSQDSALLQLLEIRDRVNKLSPPGQRRLDLFSCLLRHRLKLSTSEVVRIQSALQAFNAKLPNTVDYDTTKLCS", "length": 766 }, "evidence": [ { "id": "A0A4X1TV71", "url": "https://omabrowser.org/oma/group/A0A4X1TV71/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q499E0-1", "protein_name": "BMP/retinoic acid-inducible neural-specific protein 3", "gene_name": "Brinp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIWRRRAGAELSSLMALWEWIVLSLHCWVLAVAAVSDQHATSPFDWLLSDKGPFHRSQEYTDFVDRSRQGFSTRYKIYREFGRWKVNNLAVERRNFLGSPLPLAPEFFRNIRLLGRRPTLQQITENLIKKYGTHFLLSATLGGEESLTIFVDKRKLSKRSEGSETSTNSSSVTLETLHQLAASYFIDRDSTLRRLHHIQIASTAIKVTETRTGPLGCSNYDNLDSVSSVLVQSPENKIQLQGLQVLLPDYLQERFVQAALSYIACNSEGEFICKDNDCWCHCGPKFPECNCPSMDIQAMEENLLRITETWKAYNSDFEDSDEFKFFMKRLPMNYFLNTSTIMHLWTMDSNFQRRYEQLENSMKQLFLKAHRIVHKLFSLSKRCHKQPLISLPRQRTSTYWLTRIQSFLYCNENGLLGSFSEETHSCTCPNDQVVCTAFLPCTVGDASACLTCAPDNRTRCGTCNTGYMLSQGLCKPEVAESTDHYIGFETDLQDLEMKYLLQKTDRRIEVHAIFISNDMRLNSWFDPSWRKRMLLTLKSNKYKSSLVHMILGLSLQICLTKNSTLEPVLAVYVNPFGGSHSESWFMPVSESSFPDWERTKLDLPLQCYNWTLTLGNKWKTFFETVHIYLRSRIKANGPNSNESIYYEPLEFIDPSRNLGYMKINNIQVFGYSMHFDPEAIRDLILQLDYPYTQGSQDSALLQLLEIRDRVNKLSPPGQRRLDLFSCLLRHRLKLSTSEVVRIQSALQAFNAKLPNTVDYDTTKLCS", "length": 766 }, "evidence": [ { "id": "A0A4X1TV71", "url": "https://omabrowser.org/oma/group/A0A4X1TV71/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q76B58-1", "protein_name": "BMP/retinoic acid-inducible neural-specific protein 3", "gene_name": "BRINP3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MIWRSRAGAELFSLMALWEWIALSLHCWVLAVAAVSDQHATSPFDWLLSDKGPFHRSQEYTDFVDRSRQGFSTRYKIYREFGRWKVNNLAVERRNFLGSPLPLAPEFFRNIRLLGRRPTLQQITENLIKKYGTHFLLSATLGGEESLTIFVDKRKLSKRAEGSDSTTNSSSVTLETLHQLAASYFIDRDSTLRRLHHIQIASTAIKVTETRTGPLGCSNYDNLDSVSSVLVQSPENKIQLQGLQVLLPDYLQERFVQAALSYIACNSEGEFICKENDCWCHCGPKFPECNCPSMDIQAMEENLLRITETWKAYNSDFEESDEFKLFMKRLPMNYFLNTSTIMHLWTMDSNFQRRYEQLENSMKQLFLKAQKIVHKLFSLSKRCHKQPLISLPRQRTSTYWLTRIQSFLYCNENGLLGSFSEETHSCTCPNDQVVCTAFLPCTVGDASACLTCAPDNRTRCGTCNTGYMLSQGLCKPEVAESTDHYIGFETDLQDLEMKYLLQKTDRRIEVHAIFISNDMRLNSWFDPSWRKRMLLTLKSNKYKSSLVHMILGLSLQICLTKNSTLEPVLAVYVNPFGGSHSESWFMPVNENSFPDWERTKLDLPLQCYNWTLTLGNKWKTFFETVHIYLRSRIKSNGPNGNESIYYEPLEFIDPSRNLGYMKINNIQVFGYSMHFDPEAIRDLILQLDYPYTQGSQDSALLQLLEIRDRVNKLSPPGQRRLDLFSCLLRHRLKLSTSEVVRIQSALQAFNAKLPNTMDYDTTKLCS", "length": 766 }, "evidence": [ { "id": "A0A4X1TV71", "url": "https://omabrowser.org/oma/group/A0A4X1TV71/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K1M7-1", "protein_name": "BMP/retinoic acid-inducible neural-specific protein 3", "gene_name": "Brinp3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIWRRRAGAELSSLMALWEWIVLSLHCWVLAVAAVSDQHATSPFDWLLSDKGPFHRSQEYTDFVDRSRQGFSTRYKIYREFGRWKVNNLAVERRNFLGSPLPLAPEFFRNIRLLGRRPTLQQITENLIKKYGTHFLLSATLGGEESLTIFVDKRKLSKRPEGSETSTNSSSVTLETLHQLAASYFIDRDSTLRRLHHIQIASTAIKVTETRTGPLGCSNYDNLDSVSSVLVQSPENKIQLQGLQVLLPDYLQERFVQAALSYIACNSEGEFICKENDCWCLCGPKFPECNCPSMDIQAMEENLLRITETWKAYNSDFEDSDEFKFFMKRLPMNYFLNTSTIMHLWTMDSNFQRRYEQLENSMKQLFLKAHRIVHKLFSLSKRCHKQPLISLPRQRTSTYWLTRIQSFLYCNENGLLGSFSEETHSCTCPNDQVVCTAFLPCTVGDASACLTCAPDNRTRCGTCNTGYMLSQGLCKPEVAESTDHYIGFETDLQDLEMKYLLQKTDRRIEVHAIFISNDMRLNSWFDPSWRKRMLLTLKSNKYKSSLVHMILGLSLQICLTKNSTLEPVLAVYINPFGGSHSESWFMPVSESSFPDWERTKLDLPLQCYNWTLTLGNKWKTFFETVHIYLRSRIKANGPNSNESIYYEPLEFIDPSRNLGYMKINNIQVFGYSMHFDPEAIRDLILQLDYPYTQGSQDSALLQLLEIRDRVNKLSPPGQRRLDLFSCLLRHRLKLSTSEVVRIQSALQAFNAKLPNTVDYDTTKLCS", "length": 766 }, "evidence": [ { "id": "A0A4X1TV71", "url": "https://omabrowser.org/oma/group/A0A4X1TV71/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TV71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV71" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TV71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV71" } ], "pmid": "" }, { "name": "neuronal cell body", "id": "GO:0043025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043025", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TV71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV71" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "positive regulation of neuron differentiation", "id": "GO:0045666", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045666", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TV71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV71" } ], "pmid": "" }, { "name": "cellular response to retinoic acid", "id": "GO:0071300", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071300", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TV71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV71" } ], "pmid": "" }, { "name": "negative regulation of mitotic cell cycle", "id": "GO:0045930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045930", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TV71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV71" } ], "pmid": "" }, { "name": "central nervous system neuron differentiation", "id": "GO:0021953", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0021953", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TV71", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TV71" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 168, "end_pos": 170, "annotation": 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"", "icn3d_view": {}, "start_pos": 121, "start_aa": "Thr", "end_pos": 121, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr121", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TVG4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVG4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" }, { "start_pos": 32, "end_pos": 34, "annotation": "n_glycosylation_sequon" }, { "start_pos": 83, "end_pos": 85, "annotation": "n_glycosylation_sequon" }, { "start_pos": 9, "end_pos": 11, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], 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"site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"uniprot_canonical_ac": "A0A4X1TVI2-1", "uniprot_ac": "A0A4X1TVI2", "uniprot_id": "A0A4X1TVI2_PIG", "mass": { "chemical_mass": 29189.0, "monoisotopic_mass": 29189.0 }, "refseq": {}, "gene_names": [ { "name": "C21orf140", "type": "recommended", "evidence": [ { "id": "A0A4X1TVI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVI2" } ] } ], "protein_names": [ { "name": "Chromosome 21 open reading frame 140", "type": "synonym", "evidence": [ { "id": "A0A4X1TVI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVI2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TVI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVI2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C21orf140", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVI2", "locus": { "chromosome": "13", "start_pos": 198008222, "end_pos": 198008971, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000062452", "url": "https://www.ensembl.org/id/ENSSSCG00000062452" } ] } } ], "crossref": [ { "id": "A0A4X1TVI2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1TVI2", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR037728", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037728", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CIVHAGG", "url": "https://omabrowser.org/oma/group/CIVHAGG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TVI2", "url": "https://www.orthodb.org/?gene=A0A4X1TVI2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35969", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35969", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35969:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35969:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27940", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27940", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1TVI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TVI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVI2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPHFANPLLRNIIIRNLFDSIKRKQCLQYLKTLRTLQYDGFTTIYLGETDIPESLVTGEDFSDGSFLPTPTWCIVHAGGSKGWVPWTYRMFLRDELCIKQEDSLFFEFCEVAQKTYGKCAIVIKERRQQDEMKPKEDKESEAQVSSVINLTSIVCCPEVAKYYGHKLLSLPSPYNYLNPLDSAWSSLKWFIINNRKEFCLQSIDSVYSYQYILFSDLISKGIERINPSKWRTLTNKVRRWENYYLGKFS", "length": 249, "header": "tr|A0A4X1TVI2-1|A0A4X1TVI2_PIG Isoform 1 of Chromosome 21 open reading frame 140 OS=Sus scrofa OX=9823 GN=C21orf140 PE=4 SV=1 CANONICAL=A0A4X1TVI2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TVI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVI2/entry#A0A4X1TVI2-1", "sequence": { "sequence": "MPHFANPLLRNIIIRNLFDSIKRKQCLQYLKTLRTLQYDGFTTIYLGETDIPESLVTGEDFSDGSFLPTPTWCIVHAGGSKGWVPWTYRMFLRDELCIKQEDSLFFEFCEVAQKTYGKCAIVIKERRQQDEMKPKEDKESEAQVSSVINLTSIVCCPEVAKYYGHKLLSLPSPYNYLNPLDSAWSSLKWFIINNRKEFCLQSIDSVYSYQYILFSDLISKGIERINPSKWRTLTNKVRRWENYYLGKFS", "length": 249, "header": "tr|A0A4X1TVI2-1|A0A4X1TVI2_PIG Isoform 1 of Chromosome 21 open reading frame 140 OS=Sus scrofa OX=9823 GN=C21orf140 PE=4 SV=1 CANONICAL=A0A4X1TVI2-1" }, "locus": { "chromosome": "13", "start_pos": 198008971, "end_pos": 198008225, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099271.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099271.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081202.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081202.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TVI2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TVI2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HMU7-1", "protein_name": "Protein FAM243A", "gene_name": "Fam243a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARLTNSLLKSIVIRTQFDSVRRKQCLQYLNTLRTLQYDGYKTVYFGETEIPETLVTGEDFSDSYYMHSPTWCILHAGGSQGWVPWKYRMFLRDDLCIKQEDSLFFEFCDVIKKAYGKCAIVVKGQRQQDETKPKADMEGEAQAYVPTSINLTSIVCSPGVAKSYGHELISLPSLYNYLNPLDSAWSSMKWFIINNRKEFCLQSADDVYTYQYILFSDLISKGIEKVSLSKWKALTNKVRRWENYYLGKFS", "length": 251 }, "evidence": [ { "id": "A0A4X1TVI2", "url": "https://omabrowser.org/oma/group/A0A4X1TVI2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "B9A014-1", "protein_name": "Uncharacterized protein C21orf140", "gene_name": "C21orf140", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPRFASPLLRNVIIRSQFDGIKRKQCLQYLKTLRTLQYDGFKTVYFGETNIPESLVTGEDISDGYFIQTPTWCIVHAAGSQGWVPWKYRVFLRDELCIKQEDSLFSEFCDVVRKAYGKCVIVVKERRQQEEQRPKEDREAEGQFYIPTVISLASIMCCPEVAKSCGHELLSLPSPCNYLNPLDSAWSSLKWFIINNRNEFCLQSIDSGYSYQCILFSNLISKGIERINASKWRTLTSKVRRWENYYLGKFS", "length": 251 }, "evidence": [ { "id": "A0A4X1TVI2", "url": "https://omabrowser.org/oma/group/A0A4X1TVI2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F1MIW6-1", "protein_name": "Uncharacterized protein C21orf140 homolog", "gene_name": "FAM243", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPHFAKPLLRNIITRNLFNSIKKKQCLQYLQTLRTLQYDGFTTVYFGETDIPESLVTGEDFSDGYYMPTPTWCVVHAGGSQGWVPWKYRMFLRDELCIKQEDNLFFEFCDVVKKAYGKCAIVVKERRRQDATRPKEGKETEAQAHVPSVVNLTSVTCCPEVAKSYGHKLLTLPSPYNYLNPLDSAWSSLKWFIINNRKEFCLQSVDGVYSYQYILFSDLISKGIERINLSKWRTITTKVRRWENYYLGKLS", "length": 251 }, "evidence": [ { "id": "A0A4X1TVI2", "url": "https://omabrowser.org/oma/group/A0A4X1TVI2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8CDS7-1", "protein_name": "Uncharacterized protein C21orf140 homolog", "gene_name": "Fam243", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARFTNCLLKNIFTRSQFDSAKRRQCLQYLNALRSLQHNGYKTVYFGETEIPETLVTGEDFSDSYYIHTPSWCILHAGGSQGWVPWKYRMFLRNDLCIKKEDSLFLEFCDVVKRAYGKCAIVVKGRRQQDEMKPKTDKEGEAKAYVPTSINLTSIACSPGVAKSYGHELISLPPYYNYLNPLDSAWSSMKWFIINNRKEFCLQSVDNVYTYRYILFSDLISKGIEKVNLTKWKAITNKVRRWENYYLAKFS", "length": 251 }, "evidence": [ { "id": "A0A4X1TVI2", "url": "https://omabrowser.org/oma/group/A0A4X1TVI2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 149, "end_pos": 151 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 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"MSWHPQYRSSKFRHVFGKPASKENCYDSVPITRSVHDNHFCAVNPHFIAVVTECAGGGAFLVIPLHQTGKLDPHYPKVCGHRGNVLDVKWNPFDDFEIASCSEDATIKIWDIPKQLMTKNLTACKKELVGHARRVGLVEWHPTAANILFSSGYDYKVMVWNLDTKESVIMSPVRTITCHQDVILSMSFNTNGSLLATACKDRKIRVLDPRAGAVLQEASYKGHRANKVLFLGNLKKLLSTGTSRWNNRQMALWDQDDLSVPLTEEDLDGSSGVLFPFYDPDTNMLYVVGKGDGNIRYYEVSADKPHLNYLTEYRSYNPQKGIGVMPKRGLEVSSCEIFRFYKLITTKSLIEPISMIVPRRSESYQEDIYPPTPGAQPSMTAQEWLNGINKAAADVLSATGGDPKAPRAVDPARGPGQTTGTGDQKLADGLRKVLSRGLCPPPPSGTPLGSTWRSGTKPQVPRDCHNFYIFYQKQNSWSLKDSSGTWCRFSICLLETTVSELTLLR", "length": 505, "header": "tr|A0A4X1TZD0-1|A0A4X1TZD0_PIG Isoform 1 of Coronin OS=Sus scrofa OX=9823 GN=CORO2A PE=1 SV=1 CANONICAL=A0A4X1TZD0-1" }, "locus": { "chromosome": "1", "start_pos": 239971072, "end_pos": 239949920, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057265.2", "url": "https://www.ensembl.org/id/ENSSSCT00000057265.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056005.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056005.2" } ] } }, { "isoform_ac": "F1SSG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TZD0/entry#F1SSG3-1", "sequence": { "sequence": "MSWHPQYRSSKFRHVFGKPASKENCYDSVPITRSVHDNHFCAVNPHFIAVVTECAGGGAFLVIPLHQTGKLDPHYPKVCGHRGNVLDVKWNPFDDFEIASCSEDATIKIWDIPKQLMTKNLTACKKELVGHARRVGLVEWHPTAANILFSSGYDYKVMVWNLDTKESVIMSPVRTITCHQDVILSMSFNTNGSLLATACKDRKIRVLDPRAGAVLQEASYKGHRANKVLFLGNLKKLLSTGTSRWNNRQMALWDQDDLSVPLTEEDLDGSSGVLFPFYDPDTNMLYVVGKGDGNIRYYEVSADKPHLNYLTEYRSYNPQKGIGVMPKRGLEVSSCEIFRFYKLITTKSLIEPISMIVPRRSESYQEDIYPPTPGAQPSMTAQEWLNGINKGPVLMSLRPGSELLSPRPLPPERPLSNSTAPTSPRLFNQTERLVAEDGQRPFSLLEERSPKWATEHRLEEKKSWLTNGFDIFECPPPKTENEV", "length": 483, "header": "tr|F1SSG3-1|A0A4X1TZD0_PIG Computationally mapped isoform of Coronin OS=Sus scrofa OX=9823 GN=CORO2A PE=1 SV=2 CANONICAL=A0A4X1TZD0-1" }, "locus": { "chromosome": "1", "start_pos": 239971072, "end_pos": 239951301, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005915.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005915.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005768.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005768.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 372, "start_aa": "Thr", "end_pos": 372, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr372", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSG3", "url": "https://www.uniprot.org/uniprotkb/F1SSG3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "actin filament", "id": "GO:0005884", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005884", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TZD0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TZD0" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TZD0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TZD0" } ], "pmid": "" }, { "name": "brush border", "id": "GO:0005903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005903", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TZD0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TZD0" } ], "pmid": "" }, { "name": "transcription repressor complex", "id": "GO:0017053", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017053", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TZD0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TZD0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "actin filament organization", "id": "GO:0007015", "url": 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SV=1 CANONICAL=A0A4X1U5C0-1" }, "locus": { "chromosome": "3", "start_pos": 18253191, "end_pos": 18246369, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074900.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074900.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065114.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065114.1" } ] } }, { "isoform_ac": "A0A4X1U5B2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5C0/entry#A0A4X1U5B2-1", "sequence": { "sequence": "MDDWAPCCPRCCPLCDCACACQLPDCQSLNCLCFEIKLR", "length": 39, "header": "tr|A0A4X1U5B2-1|A0A4X1U5B2_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1U5C0-1" }, "locus": { "chromosome": "3", "start_pos": 18253191, "end_pos": 18246369, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086015.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086015.1" }, { "database": "Ensembl 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1U0H4-1", "uniprot_ac": "A0A4X1U0H4", "uniprot_id": "A0A4X1U0H4_PIG", "mass": { "chemical_mass": 35035.0, "monoisotopic_mass": 35035.0 }, "refseq": { "ac": "NP_001231858", "name": "maspardin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231858" }, "gene_names": [ { "name": "SPG21", "type": "recommended", "evidence": [ { "id": "A0A4X1U0H4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0H4" } ] }, { "name": "SPG21", "type": "synonym", "evidence": [ { "id": "NP_001231858", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231858" } ] } ], "protein_names": [ { "name": "Maspardin", "type": "recommended", "evidence": [ { "id": "A0A4X1U0H4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0H4/entry#names_and_taxonomy" } ] }, { "name": "SPG21, maspardin", "type": "synonym", "evidence": [ { "id": "NP_001231858", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231858" } ] }, { "name": "maspardin", "type": "synonym", "evidence": [ { "id": "NP_001231858", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231858" } ] }, { "name": "spastic paraplegia 21 (autosomal recessive, Mast syndrome)", "type": "synonym", "evidence": [ { "id": "NP_001231858", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231858" } ] } ], "function": [ { "annotation": "May play a role as a negative regulatory factor in CD4-dependent T-cell activation.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U5P4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5P4#function" }, { "database": "UniProtKB", "id": "ARBA00002271", "url": "https://www.uniprot.org/uniprotkb/ARBA00002271#function" }, { "database": "UniProtKB", "id": "A0A4X1U0H4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0H4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U0H4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0H4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPG21", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0H4", "locus": { "chromosome": "1", "start_pos": 107036347, "end_pos": 107011547, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004544", "url": "https://www.ensembl.org/id/ENSSSCG00000004544" } ] } } ], "crossref": [ { "id": "100514084", "url": "https://www.ncbi.nlm.nih.gov/gene/100514084", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514084", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514084", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CYVQPQK", "url": "https://omabrowser.org/oma/group/CYVQPQK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1U0H4", "url": "https://www.orthodb.org/?gene=A0A4X1U0H4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1U5P4", "url": "https://www.orthodb.org/?gene=A0A4X1U5P4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15913", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15913", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15913:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15913:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231858", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231858", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1U0H4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0H4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U0H4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0H4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U0J0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0J0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U0J0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0J0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U5P4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5P4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U5P4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5P4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRNIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVQSLILCNAFSDTSIFNQTWTANSFWLMPSFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGNLGISQEEQ", "length": 308, "header": "tr|A0A4X1U0H4-1|A0A4X1U0H4_PIG Isoform 1 of Maspardin OS=Sus scrofa OX=9823 GN=SPG21 PE=3 SV=1 CANONICAL=A0A4X1U0H4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1U0H4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0H4/entry#A0A4X1U0H4-1", "sequence": { "sequence": "MGEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRNIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVQSLILCNAFSDTSIFNQTWTANSFWLMPSFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGNLGISQEEQ", "length": 308, "header": "tr|A0A4X1U0H4-1|A0A4X1U0H4_PIG Isoform 1 of Maspardin OS=Sus scrofa OX=9823 GN=SPG21 PE=3 SV=1 CANONICAL=A0A4X1U0H4-1" }, "locus": { "chromosome": "1", "start_pos": 107035789, "end_pos": 107016013, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025583.3", "url": "https://www.ensembl.org/id/ENSSSCT00000025583.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020582.2", "url": "https://www.ensembl.org/id/ENSSSCP00000020582.2" } ] } }, { "isoform_ac": "A0A4X1U0J0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0H4/entry#A0A4X1U0J0-1", "sequence": { "sequence": "MGEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRNIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIAVHLFGASLGGFLAQKFAEYTHKSPRVQSLILCNAFSDTSIFNQTWTANSFWLMPSFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGNLGISQEEQ", "length": 281, "header": "tr|A0A4X1U0J0-1|A0A4X1U0J0_PIG Computationally mapped isoform of SPG21 abhydrolase domain containing, maspardin OS=Sus scrofa OX=9823 GN=SPG21 PE=3 SV=1 CANONICAL=A0A4X1U0H4-1" }, "locus": { "chromosome": "1", "start_pos": 107035789, "end_pos": 107016013, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085053.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085053.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073691.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073691.1" } ] } }, { "isoform_ac": "A0A4X1U5P4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0H4/entry#A0A4X1U5P4-1", "sequence": { "sequence": "MVTAGDTQLRPFLATWPRPSKPGSAGLRPAARKIRERGRWPRPAWPRAPPLGGRLSNAPPRSAELAGTERSTHRPRPGPSSLPGLDPCWREKPPWGGGKGNWRRPRKIIVDDDDSKIWSLYDAGPRNIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVQSLILCNAFSDTSIFNQTWTANSFWLMPSFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGNLGISQEEQ", "length": 394, "header": "tr|A0A4X1U5P4-1|A0A4X1U5P4_PIG Computationally mapped isoform of Maspardin OS=Sus scrofa OX=9823 GN=SPG21 PE=3 SV=1 CANONICAL=A0A4X1U0H4-1" }, "locus": { "chromosome": "1", "start_pos": 107035789, "end_pos": 107011746, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005019.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005019.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004899.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004899.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U0H4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0H4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514084", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514084", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C0Z8-1", "protein_name": "Maspardin", "gene_name": "SPG21", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGEIKVSPDYNWFRSTVPLKKIIVDDDDSKVWSLYDAGPRSIRCPLIFLPPVSGTADVFFQQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVQSLILCNAFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFASGPVDPEMADGIDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYIQIHLLQFHGTRYAAIDPSMVSAEELEVQKISLHTSSEQEEQ", "length": 310 }, "evidence": [ { "id": "A0A4X1U0H4", "url": "https://omabrowser.org/oma/group/A0A4X1U0H4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HUZ3-1", "protein_name": "Maspardin", "gene_name": "Spg21", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFQQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNAFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSVVSAEELEVQKGRLALSQEEP", "length": 308 }, "evidence": [ { "id": "A0A4X1U0H4", "url": "https://omabrowser.org/oma/group/A0A4X1U0H4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q54I38-1", "protein_name": "Maspardin", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKLNQSDPYQLFRSWAPQNKISIGTLNEKIWKYYDYGPKDTNNAPIIFISHGSADIYFKQFLMLCPRGHRVISIQFSPYDTLSGWCKGFERFLDRLELDKPVHLFGSSLGGYLAQCFYQSKPSRVLSLILNNTFSDTQYFYDNSIGSSLFSLLPEFLLKKIILNNFPSGLLDNETREAVDFMVDQLETLNQNELASRLTLNCSPVSLLNPSGGLMDNITIIDCLDSTIPEKLREEVYKYYPNAKTALLKSGGDFSYLSRSDELNIHIEVHLRRFENLNNNNNNNNNNNNNNKDIKNNNEKQEVKIHQINNNNNNNNNNNNNNNNNNNNNIDKNNVNKIENNNNDIDIEGQNRISTTTISKNVSEATGKLNTSVFDNEDNDVFL", "length": 384 }, "evidence": [ { "id": "A0A4X1U0H4", "url": "https://omabrowser.org/oma/group/A0A4X1U0H4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5XIC4-1", "protein_name": "Maspardin", "gene_name": "Spg21", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFQQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNAFSDTSIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDIHLLQFHGTKYAAIDPSVVSAEELDVQKGQLDLSQEEP", "length": 261 }, "evidence": [ { "id": "A0A4X1U0H4", "url": "https://omabrowser.org/oma/group/A0A4X1U0H4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8MJJ1-1", "protein_name": "Maspardin", "gene_name": "SPG21", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRNIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIFNQTWTASSFWLMPSFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYVEPHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTKYAAIDPSMVSAEELEVQKGSLGISQEEQ", "length": 308 }, "evidence": [ { "id": "A0A4X1U0H4", "url": 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scrofa OX=9823 GN=KLHL8 PE=4 SV=1 CANONICAL=A0A4X1U1F7-1" }, "locus": { "chromosome": "8", "start_pos": 131697606, "end_pos": 131663673, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010105.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010105.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009839.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009839.4" } ] } }, { "isoform_ac": "A0A4X1U6S4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U1F7/entry#A0A4X1U6S4-1", "sequence": { "sequence": "MASESTNAKQARNRFTKGKRQPHQQIKNRSSISDGDGEDFFIFEANEAWKEFHGSLLQFYENGELCDVTLKVRLPLLPVDFLMGVVAKEQIVKQNLKCRDLLDEARNYHLHLSSRAVPDFEYSIRTTPRKQTAGVLFCVGGRGGSGDPFRSIECYSINKNSWFFGPEMNSRRRHVGVISVEGKVYAVGGHDGNEHLGSMEMFDPLTNKWMMKASMNTKRRGIALASLGGPIYAIGGLDDNTCFNDVERYDIESDQWSTVAPMNTPRGGVGSVALVNHVYAVGGNDGVASLSSVERYDPHLDKWIEVKEMGQRRAGNGVSELHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRGGVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNRWELVGSVSHCRAGAGVAVCACLTSQIRDVGHGSSNVVDCM", "length": 436, "header": "tr|A0A4X1U6S4-1|A0A4X1U6S4_PIG Computationally mapped isoform of Kelch like family member 8 OS=Sus scrofa OX=9823 GN=KLHL8 PE=4 SV=1 CANONICAL=A0A4X1U1F7-1" }, "locus": { "chromosome": "8", "start_pos": 131697606, "end_pos": 131663673, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057387.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057387.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058844.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058844.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U1F7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U1F7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521566", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521566", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9S186-1", "protein_name": "Kelch-like protein 8", "gene_name": "KLHL8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASEAVNAKQARNRFTKGKRQQQIKNRSSLGDGDGEDSFLFEANEAWKDFHGSLLQFYENGELCDVTLKVGSKLISCHKLALACVIPYFKAMFLSEMAEAKQTLIEIRDFDGDAIEDLVKFVYSSRLTLTVDNVQPLLYAACILQVELVARACCEYMKLHFHPSNCLAVRAFAESHNRVDLMDMADQYACEHFTEVVECEDFVSVSPQHLHKLLSSSDLNIENEKQVYSAAIKWLLANPQHHPLWLDETLAQVRLPLLPVDFLMGVVAKEQIVKQNLKCRDLLDEARNYHLHLSSRAVPDFEYSIRTTPRKHTAGVLFCVGGRGGSGDPFRSIECYSINKNSWFFGPEMNSRRRHVGVISVEGKVYAVGGHDGNEHLGSMEMFDPLTNKWMMKASMNTKRRGIALASLGGPIYAIGGLDDNTCFNDVERYDIESDQWSTVAPMNTPRGGVGSVALVNHVYAVGGNDGVASLSSVERYDPHLDKWIEVKEMGQRRAGNGVSELHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRGGVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNRWELVGSVSHCRAGAGVAVCACLTSQIRDVGHGSSNVVDCM", "length": 617 }, "evidence": [ { "id": "A0A4X1U1F7", "url": "https://omabrowser.org/oma/group/A0A4X1U1F7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0LYQ9-1", "protein_name": "Kelch-like family member 8", "gene_name": "Klhl8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASESTNGKLARSHVTKGRRQQQQQQQVRSRSSVSECDGDDSFIFEANEAWKDFHGSLLGFYENGELCDVTLKVGSKLISCHKLALACVIPYFRAMFLSEMSEAKQALIEIRDFDGDAVEDLVKFVYSSRLTLTVDNVQPLLYAACILQVELVARACCEYMKLHFHPSNCLAVRAFAESHNRTDLMDMADQYACEHFTEVVECEDFVSVSPQHLHKLLSSSDLNIDSEKQVYSAAIKWLLANPQHHPKWLDETLAQVRLPLLPVDFLMGVVAKEQIVKQNLKCRDLLDEARNYHLHLSSKPVPDFEYSVRTTPRKHTAGVLFCVGGRGGSGDPFRSIECYSINTNSWFFGPEMNSRRRHVGVISVEGKVYAVGGHDGNEHLGSMEMFDPLTNKWMVKASMNTKRRGIALASLGGPIYAIGGLDDNTCFSDVERYDIESDQWSTVAPMNTPRGGVGSVALINHVYAVGGNDGVASLSSVERYHPHLDKWVEVKEMGQRRAGNGVSELHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRGGVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQIRDVGHGSTNVVDCM", "length": 621 }, "evidence": [ { "id": "A0A4X1U1F7", "url": "https://omabrowser.org/oma/group/A0A4X1U1F7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BQR4-1", "protein_name": "Kelch like family member 8", "gene_name": "KLHL8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASESMVPEQAKQHPMKGKRRPQQQQTRSSSGDGEDDIFVFEANEAWKDFHSSLLHFFEAGELCDVTLKVGTKLISCHKLVLACVIPYFRAMFLSEMAEAKQTLIEIRDFDGDAIEDLVKFVYSSRLTLTVDNVQPLLYAACILQVELVAKACCEYMKLHFHPSNCLAVRSFAESHNRIDLMDMADQYACEHFTEVVECEDFVSVSPQHLHKLLSSSDLNIENEKQVYNAAIKWLLANPQHHATWLDEILAQVRLPLLPICFLMGVVAKEEIVKQNLKCRDLLDEARNYHLHLSSRAVPDFEYSIRTTPRKQTAGVLFCVGGRGGSGDPFRSIECYSINKNSWFFGPEMNSRRRHVGVISVGGRVYAVGGHDGNEHLGSMEVFDPLTNKWMIKASMNTKRRGIALASLGGPIYAIGGLDDNTCFSDVERYDIESDRWSAVAPMNTPRGGVGSVALMNHVYAVGGNDGIASLSSVEKYDPHLDKWMEVKEMGQRRAGNGVSELHGCLYVVGGFDDNSPLSSVERFDPRSDKWEYVAELTTPRGGVGIATLMGRIFAVGGHNGNAYLNTVEAFDPIVNRWELVGSVSHCRAGAGVAVCACLSSQIRDVGQGSSNVVDCM", "length": 617 }, "evidence": [ { "id": "A0A4X1U1F7", "url": "https://omabrowser.org/oma/group/A0A4X1U1F7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3III0-1", "protein_name": "Kelch-like protein 8", "gene_name": "Klhl8", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASESTNGKQARSHVTKGRRQHQHQPARSRSSVSECEGDDSFIFEANEAWKDFHSSLLRFYENGELCDVTLKVGSKLISCHKLVLACVIPYFRAMFLSEMAEAKQALIEIRDFDGDAVEDLVKFVYSSRLTLTVDNVQPLLYAACILQVELVARACCEYMKLHFHPSNCLAVRAFAESHNRIDLMDMADQYACEHFTEVVECEDFVSVSPQHLHKLLSSSDLNIDSEKQVYSAAIKWLLANPQHHSKWLDETLAQVRLPLLPVDFLMGVVAKEQIVKQNLKCRDLLDEARNYHLHLSSKPVPDFEYTVRTTPRKHTAGVLFCVGGRGGSGDPFRSIECYSINKNSWFFGPEMNSRRRHVGVISVEGKVYAVGGHDGNEHLGSMEMFDPLTNKWMMKASMNTKRRGIALASLGGPIYAIGGLDDNTCFSDVERYDIESDQWSTVAPMNTPRGGVGSVALVNHVYAVGGNDGVASLSSVERYHPHLDKWIEVKEMGQRRAGNGVSELHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRGGVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQIRDVGHGSTNVVDCM", "length": 620 }, "evidence": [ { "id": "A0A4X1U1F7", "url": "https://omabrowser.org/oma/group/A0A4X1U1F7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P59280-1", "protein_name": "Kelch-like protein 8", "gene_name": "Klhl8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASESTNGKQARSHVTKGRRQYQHQHQQQQQQQQQVRSRSSVSECDGDDSFIFEANEAWKDFHGSLLGFYENGELCDVTLKVGSKLISCHKLVLACVIPYFRAMFLSEMSEAKQALIEIRDFDGDAVEDLVKFVYSSRLTLTVDNVQPLLYAACILQVELVARACCEYMQLHFHPSNCLAVRAFAESHNRIDLMDMADQYACEHFTEVVECEDFVSVSPQHLHKLLSSSDLNIDSEKQVYSAAIKWLLANPQHHPKWLDETLAQVRLPLLPVDFLMGVVAKEQIVKQNLKCRDLLDEARNYHLHLSSKPVPDFEYTVRTTPRKHTAGVLFCVGGRGGSGDPFRSIECYSINKNSWFFGPEMNSRRRHVGVISVEGKVYAVGGHDGNEHLGSMEMFDPLTNKWMMKASMNTKRRGIALASLGGPIYAIGGLDDNTCFSDVERYDIESDQWSTVAPMNTPRGGVGSVALINHVYAVGGNDGVASLSSVERYHPHLDKWIEVKEMGQRRAGNGVSELHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRGGVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQIRDVGHGSTNVVDCM", "length": 629 }, "evidence": [ { "id": "A0A4X1U1F7", "url": "https://omabrowser.org/oma/group/A0A4X1U1F7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9P2G9-1", "protein_name": "Kelch-like protein 8", "gene_name": "KLHL8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASDSMSSKQARNHITKGKRQQQHQQIKNRSSISDGDGEDSFIFEANEAWKDFHGSLLRFYENGELCDVTLKVGSKLISCHKLVLACVIPYFRAMFLSEMAEAKQTLIEIRDFDGDAIEDLVKFVYSSRLTLTVDNVQPLLYAACILQVELVARACCEYMKLHFHPSNCLAVRAFAESHNRIDLMDMADQYACDHFTEVVECEDFVSVSPQHLHKLLSSSDLNIENEKQVYNAAIKWLLANPQHHSKWLDETLAQVRLPLLPVDFLMGVVAKEQIVKQNLKCRDLLDEARNYHLHLSSRAVPDFEYSIRTTPRKHTAGVLFCVGGRGGSGDPFRSIECYSINKNSWFFGPEMNSRRRHVGVISVEGKVYAVGGHDGNEHLGSMEMFDPLTNKWMMKASMNTKRRGIALASLGGPIYAIGGLDDNTCFNDVERYDIESDQWSTVAPMNTPRGGVGSVALVNHVYAVGGNDGMASLSSVERYDPHLDKWIEVKEMGQRRAGNGVSKLHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRGGVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNRWELVGSVSHCRAGAGVAVCSCLTSQIRDVGHGSNNVVDCM", "length": 620 }, "evidence": [ { "id": "A0A4X1U1F7", "url": "https://omabrowser.org/oma/group/A0A4X1U1F7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U1F7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U1F7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U1F7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U1F7" } ], "pmid": "" }, { "name": "Cul3-RING ubiquitin ligase complex", "id": "GO:0031463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031463", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U1F7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U1F7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U1F7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U1F7" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U1F7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U1F7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U1F7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U1F7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 28, "end_pos": 30, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1U1F7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U1F7" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 66, "end_pos": 133, "start_aa": "Cys", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 28, "end_pos": 30 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1U1G2-1", "uniprot_ac": "A0A4X1U1G2", "uniprot_id": "A0A4X1U1G2_PIG", "mass": { "chemical_mass": 23492.0, "monoisotopic_mass": 23492.0 }, "refseq": { "ac": "XP_001928999", "name": "spermatogenesis-associated protein 25", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928999" }, "gene_names": [ { "name": "SPATA25", "type": "recommended", "evidence": [ { "id": "A0A4X1U1G2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U1G2" } ] }, { "name": "SPATA25", "type": "synonym", "evidence": [ { "id": "XP_001928999", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928999" } ] } ], "protein_names": [ { "name": "Spermatosis associated 25", "type": "synonym", "evidence": [ { "id": "A0A4X1U1G2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U1G2/entry#names_and_taxonomy" } ] }, { "name": "spermatogenesis-associated protein 25", "type": "synonym", "evidence": [ { "id": "XP_001928999", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928999" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1U2E1-1", "uniprot_ac": "A0A4X1U2E1", "uniprot_id": "A0A4X1U2E1_PIG", "mass": { "chemical_mass": 69920.0, "monoisotopic_mass": 69920.0 }, "refseq": { "ac": "XP_005652447", "name": "EPM2A-interacting protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652447" }, "gene_names": [ { "name": "EPM2AIP1", "type": "recommended", "evidence": [ { "id": "A0A4X1U2E1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2E1" } ] }, { "name": "EPM2AIP1", "type": "synonym", "evidence": [ { "id": "XP_005652447", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652447" } ] } ], "protein_names": [ { "name": "EPM2A interacting protein 1", "type": "synonym", "evidence": [ { "id": "A0A4X1U2E1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2E1/entry#names_and_taxonomy" } ] }, { "name": "EPM2A-interacting protein 1", "type": "synonym", "evidence": [ { "id": "XP_005652447", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652447" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U2E1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2E1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EPM2AIP1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2E1", "locus": { "chromosome": "13", "start_pos": 21879972, "end_pos": 21878146, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030247", "url": "https://www.ensembl.org/id/ENSSSCG00000030247" } ] } } ], "crossref": [ { "id": "A0A4X1U2E1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1U2E1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100625707", "url": "https://www.ncbi.nlm.nih.gov/gene/100625707", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040647", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040647", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100625707", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625707", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HGERING", "url": "https://omabrowser.org/oma/group/HGERING/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1U2E1", "url": "https://www.orthodb.org/?gene=A0A4X1U2E1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45913", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45913", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45913:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45913:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF18658", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18658", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27073", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27073", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005652447", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652447", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1U2E1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2E1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U2E1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2E1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWMTPKRSKMEIEEPRGFQAEWTQRYLVVEPPEGEGALCLVCRRLVVANGEPDVRHHYEAEHDYYERYVAEGERAALVERLRQGDLPDAAPLTPEERAARAGLGLTRLLALKGRGWGEGDFVYRCMEVMLRDVLPDHVGVMDGIDLSPEITQQRVLDINQNLRSQLFNRAKDFKAYSLALDDQAFVAYENYLLVFVRGVGHDLEVQEELLTIINLTQHFSVGALMAAILEALQTAGLSLQRMVGLTTTHTLRMIGENSGLVSYMREKAVSPNCWNVIHYSGFLHLELLSSYDVDVNQIINAISEWIVLIKTRGVRRPEFQALLTESESEHGERVNGRCLNNWLRRGKTLKLIFSLRKEIKTFLVSIGATTVHFTDKQWLCDFGFLVDIMDHLRELSELLRVSKVFAAAAFDHICTFEVKLNLLQRHIEEKNLTHFAALREVVDELKEHLQEDEKILDPERYQVVICRLQKEFERHFKDLKFIKKDLELFANPFSFKAEYAPISVRVELTKLQANTNLWNEYRTKDLGQFYAGLSAESYPIIKGVACKVASLFDSSKICEKAFSYLTRNQHTLSHPLTDEHLHALFRIATTEIEPQWDDLVRGRNESNP", "length": 608, "header": "tr|A0A4X1U2E1-1|A0A4X1U2E1_PIG Isoform 1 of EPM2A interacting protein 1 OS=Sus scrofa OX=9823 GN=EPM2AIP1 PE=1 SV=1 CANONICAL=A0A4X1U2E1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1U2E1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2E1/entry#A0A4X1U2E1-1", "sequence": { "sequence": "MWMTPKRSKMEIEEPRGFQAEWTQRYLVVEPPEGEGALCLVCRRLVVANGEPDVRHHYEAEHDYYERYVAEGERAALVERLRQGDLPDAAPLTPEERAARAGLGLTRLLALKGRGWGEGDFVYRCMEVMLRDVLPDHVGVMDGIDLSPEITQQRVLDINQNLRSQLFNRAKDFKAYSLALDDQAFVAYENYLLVFVRGVGHDLEVQEELLTIINLTQHFSVGALMAAILEALQTAGLSLQRMVGLTTTHTLRMIGENSGLVSYMREKAVSPNCWNVIHYSGFLHLELLSSYDVDVNQIINAISEWIVLIKTRGVRRPEFQALLTESESEHGERVNGRCLNNWLRRGKTLKLIFSLRKEIKTFLVSIGATTVHFTDKQWLCDFGFLVDIMDHLRELSELLRVSKVFAAAAFDHICTFEVKLNLLQRHIEEKNLTHFAALREVVDELKEHLQEDEKILDPERYQVVICRLQKEFERHFKDLKFIKKDLELFANPFSFKAEYAPISVRVELTKLQANTNLWNEYRTKDLGQFYAGLSAESYPIIKGVACKVASLFDSSKICEKAFSYLTRNQHTLSHPLTDEHLHALFRIATTEIEPQWDDLVRGRNESNP", "length": 608, "header": "tr|A0A4X1U2E1-1|A0A4X1U2E1_PIG Isoform 1 of EPM2A interacting protein 1 OS=Sus scrofa OX=9823 GN=EPM2AIP1 PE=1 SV=1 CANONICAL=A0A4X1U2E1-1" }, "locus": { "chromosome": "13", "start_pos": 21879969, "end_pos": 21878146, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032126.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032126.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023907.1", "url": "https://www.ensembl.org/id/ENSSSCP00000023907.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U2E1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2E1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625707", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625707", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9T2N9-1", "protein_name": "EPM2A interacting protein 1", "gene_name": "EPM2AIP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MWMTPKRSKMEIDESRAFRAEWTQRYLVVEPPEGEGALCLVCRRLVAATGELDVKQHYEAEHEYYERYVTEDERAALVERLRRGDFPEAAPLTPEQRIARAGLGLARLLALKGCGWGEGDFVHRCMAVMLRDVLPDHVGIMDGIDLSPETTRQRVLDIHQNLRSQLFNRAKDFKAYSLALDDQAFVAYENYLLVFVRGVGHDLEVHEELLTIINLTHHFSVGALMAAILEALQTAGLSLQRMVGLTTTHTLRMIGENSGLVSYMREKAVSPNCWNVIHYSGFLHLELLSSYDVDVNQIINAVSEWIVLIKTRGVRRPEFQALLTESESEHGERVNGRCLNNWLRKGKTLKLIFSLRKEIETFLVSIGATTVHFTDKEWLCDFGFLVDIMDHLREISELLRVSKVFAAAAFDHICAFEVKLNLLQRQVEEKNLTHFASLSQVVDELKENLQEDEKVLDLERYRAVICRLQKEFERHFKDLKFIKKDLELFANPFSFKPEYAPISVRVELTKLQASANLWEEYRTKDLGQFYAGLPAESYPIIKGVACKVASLFDSSKICEKAFSYLTRNQHTLSQPLTDEHLHALFRIATTEIEPRWDDLVRGRNESHP", "length": 608 }, "evidence": [ { "id": "A0A4X1U2E1", "url": "https://omabrowser.org/oma/group/A0A4X1U2E1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1M471-1", "protein_name": "EPM2A interacting protein 1", "gene_name": "Epm2aip1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWMTPKRIRMEVDEALVFRPEWTQRYLVVEPAEGDGALCLVCRRLVASTRERDVRRHYEAEHEFYERFVGDEERAALVERLRQGDMSLAAVLTPEERATRAGLGLCRFLALKGRGWGEGDFVHQCMEVLLREVLPDHVGVLEGIDLSPEITRQRILSIDSNLRSQLFNRARDFKAYSLALDDQAFVAYENYLLVFIRGVGRDLEVQEDLLTIINLTHHFSVGALMSAILEALQTAGLSLQRMVGLTTTHTLRMIGENSGLVSYMREKAVSPNCWNVIHYSGFLHLELLSSYDVDINQIINTISEWVVMIKTRGVRRPEFQSLLTESESEHGERVNGRCLNNWLRRGKTLKLIFSLRKEIEAFLVSVGATTVHFSDKQWLCDFGFLVDIMDYLREISEELQISKVFAAAAFERICTFEDKLSSLQRHMEEVNLTDFPAFSIIVDELKQQFKEDQKIFDPDRYQMVISRLQKDFERHFKDLRFIKKDLELFSNPFSFKPEYAPISVRVELTKLQGNTDLWNEYRVKDLGQFYAGLSGEAYPIIKGVAYKVASLFDSNQICDKAFAYLTRNQHTLSQPLTDEHLQALFRVATTEMDPRWDDLVRERNDS", "length": 606 }, "evidence": [ { "id": "A0A4X1U2E1", "url": "https://omabrowser.org/oma/group/A0A4X1U2E1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HTA6-1", "protein_name": "EPM2A-interacting protein 1", "gene_name": "Epm2aip1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MWMTPKRIRMEVDEALVFRPEWTQRYLVVEPAEGDGALCLVCRRLVASTRERDVRRHYEAEHEFYERFVGDEERAALVERLRQGDMSLASVLTPEERATRAGLGLCRFLALKGRGWGEGDFVHQCMEVLLREVLPDHVGVLEGIDLSPEITRQRILSIDSNLRGQLFNRARDFKAYSLALDDQAFVAYENYLLVFIRGVGHDLQVQEDLLTIINLTHHFSVGALMAAILEALQTAGLSLQRMVGLTTTHTLRMIGENSGLVSYMREKAVSPNCWNVIHYSGFLHLELLSSYDVDINQIINTISEWVVMIKTRGVRRPEFQPLLTESESEHGERVNGRCLNNWLRRGKTLKLIFSLRKEIEAFLVSVGATTVHFSDKQWLCDFGFLVDIMDYLREISEELQISKVFAAAAFDRICTFEAKLSSLQRHMEEVNLEDFPAFSIIVDELKQQFKEDQKIFDPDRYQMVISRLLKDFERHFKDLRFIKKDLELFANPFSFKPEYAPISVRVELTKLQGNTDLWNEYQVKDLGQFYAGLSGEAYPIIKGVAYKVASLFDSNQICDKAFSYLTRNQHTLSQPLTDEHLQALFRVATTEMDPRWDDLVRERNDS", "length": 606 }, "evidence": [ { "id": "A0A4X1U2E1", "url": "https://omabrowser.org/oma/group/A0A4X1U2E1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q7L775-1", "protein_name": "EPM2A-interacting protein 1", "gene_name": "EPM2AIP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWMTPKRSKMEVDEALVFRPEWTQRYLVVEPPEGDGALCLVCRRLIVATRERDVRRHYEAEHEYYERYVADGERAALVERLRQGDLPVASFTPEERAARAGLGLCRLLALKGRGWGEGDFVYQCMEVLLREVLPEHVSVLQGVDLSPDITRQRILSIDRNLRNQLFNRARDFKAYSLALDDQAFVAYENYLLVFIRGVGPELEVQEDLLTIINLTHHFSVGALMSAILESLQTAGLSLQRMVGLTTTHTLRMIGENSGLVSYMREKAVSPNCWNVIHYSGFLHLELLSSYDVDVNQIINTISEWIVLIKTRGVRRPEFQTLLTESESEHGERVNGRCLNNWLRRGKTLKLIFSLRKEMEAFLVSVGATTVHFSDKQWLCDFGFLVDIMEHLRELSEELRVSKVFAAAAFDHICTFEVKLNLFQRHIEEKNLTDFPALREVVDELKQQNKEDEKIFDPDRYQMVICRLQKEFERHFKDLRFIKKDLELFSNPFNFKPEYAPISVRVELTKLQANTNLWNEYRIKDLGQFYAGLSAESYPIIKGVACKVASLFDSNQICEKAFSYLTRNQHTLSQPLTDEHLQALFRVATTEMEPGWDDLVRERNESNP", "length": 607 }, "evidence": [ { "id": "A0A4X1U2E1", "url": "https://omabrowser.org/oma/group/A0A4X1U2E1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VEH5-1", "protein_name": "EPM2A-interacting protein 1", "gene_name": "Epm2aip1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWMTPKRIRMEVDEALVFRPEWTQRYLVVEPAEGDGALCLVCRRLVASTRERDVRRHYEAEHEFYERFVGDEERAALVERLRQGDMSLAAVLTPEERATRAGLGLCRFLALKGRGWGEGDFVHQCMEVLLREVLPDHVGVLEGIDLSPEITRQRILSIDSNLRSQLFNRARDFKAYSLALDDQAFVAYENYLLVFIRGVGRDLEVQEDLLTIINLTHHFSVGALMSAILEALQTAGLSLQRMVGLTTTHTLRMIGENSGLVSYMREKAVSPNCWNVIHYSGFLHLELLSSYDVDINQIINTISEWVVMIKTRGVRRPEFQPLLTESESEHGERVNGRCLNNWLRRGKTLKLIFSLRKEIEAFLVSVGATTVHFSDKQWLCDFGFLVDIMDYLREISEELQISKVFAAAAFERICTFEGKLSSLQRHMEEVNLTDFPAFSIIVDELKQQFKEDQKIFDPDRYQMVISRLQKDFERHFKDLRFIKKDLELFSNPFSFKPEYAPISVRVELTKLQANTDLWNEYRVKDLGQFYAGLSGEAYPIIKGVAYKVASLFDSNQICDKAFAYLTRNQHTLSQPLTDEHLQALFRVATTEMDPRWDDLVRERNDS", "length": 606 }, "evidence": [ { "id": "A0A4X1U2E1", "url": "https://omabrowser.org/oma/group/A0A4X1U2E1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasmic side of endoplasmic reticulum membrane", "id": "GO:0098554", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098554", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U2E1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2E1" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U2E1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2E1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U2E1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2E1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of glycogen biosynthetic process", "id": "GO:0045725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045725", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U2E1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2E1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 431, "end_pos": 433, "annotation": "n_glycosylation_sequon" }, { "start_pos": 604, "end_pos": 606, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1U2E1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2E1" }, { "id": "PF18658", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18658" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SPIN-DOC-like zinc-finger", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 77, "start_aa": "Gln", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 214, "end_pos": 216 }, { "start_pos": 431, "end_pos": 433 }, { "start_pos": 604, "end_pos": 606 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1U2R8-1", "uniprot_ac": "A0A4X1U2R8", "uniprot_id": "A0A4X1U2R8_PIG", "mass": { "chemical_mass": 62693.0, "monoisotopic_mass": 62693.0 }, "refseq": {}, "gene_names": [ { "name": "PALS2", "type": "recommended", "evidence": [ { "id": "A0A4X1U2R8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8" } ] } ], "protein_names": [ { "name": "Protein associated with LIN7 2, MAGUK p55 family member", "type": "synonym", "evidence": [ { "id": "A0A4X1U2R8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U2R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PALS2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8", "locus": { "chromosome": "18", "start_pos": 47593049, "end_pos": 47710570, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016717", "url": "https://www.ensembl.org/id/ENSSSCG00000016717" } ] } } ], "crossref": [ { "id": "cd00071", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00071", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd10832", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10832", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12038", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12038", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008144", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008144", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008145", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008145", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020590", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020590", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035603", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035603", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050716", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050716", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NPTTPHK", "url": "https://omabrowser.org/oma/group/NPTTPHK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1U2R8", "url": "https://www.orthodb.org/?gene=A0A4X1U2R8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23122", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23122", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00625", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00625", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02828", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02828", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07653", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07653", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1U2R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U2R8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D2A532", "url": "https://www.uniprot.org/uniprotkb/A0A8D2A532", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D2A532-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D2A532-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQQVLDNLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEILEDITPLINVDENVAELVGILKEPHFQSLLEAHDIVASKCYESPPSSPEMNNSSVNNQLLPVDAIRILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYRDTITPQQSCVNLERHPALVRQVFVKCHFDYNPYNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISSKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPTRFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSILEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQRAYNHYFDLIIVNDNLDKAFEKLQTAIEKLRMEPQWVPISWVY", "length": 554, "header": "tr|A0A4X1U2R8-1|A0A4X1U2R8_PIG Isoform 1 of Protein associated with LIN7 2, MAGUK p55 family member OS=Sus scrofa OX=9823 GN=PALS2 PE=1 SV=1 CANONICAL=A0A4X1U2R8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1U2R8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8/entry#A0A4X1U2R8-1", "sequence": { "sequence": "MQQVLDNLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEILEDITPLINVDENVAELVGILKEPHFQSLLEAHDIVASKCYESPPSSPEMNNSSVNNQLLPVDAIRILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYRDTITPQQSCVNLERHPALVRQVFVKCHFDYNPYNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISSKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPTRFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSILEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQRAYNHYFDLIIVNDNLDKAFEKLQTAIEKLRMEPQWVPISWVY", "length": 554, "header": "tr|A0A4X1U2R8-1|A0A4X1U2R8_PIG Isoform 1 of Protein associated with LIN7 2, MAGUK p55 family member OS=Sus scrofa OX=9823 GN=PALS2 PE=1 SV=1 CANONICAL=A0A4X1U2R8-1" }, "locus": { "chromosome": "18", "start_pos": 47656997, "end_pos": 47593314, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048066.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048066.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038214.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038214.1" } ] } }, { "isoform_ac": "A0A8D2A532-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8/entry#A0A8D2A532-1", "sequence": { "sequence": "MQQVLDNLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEILEDITPLINVDENVAELVGILKEPHFQSLLEAHDIVASKCYESPPSSPEMNNSSVNNQLLPVDAIRILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYRDTITPQQVSSNIHPPVFVKCHFDYNPYNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISSKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPTRFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSILEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQRAYNHYFDLIIVNDNLDKAFEKLQTAIEKLRMEPQWVPISWVY", "length": 548, "header": "tr|A0A8D2A532-1|A0A4X1U2R8_PIG Computationally mapped isoform of Protein associated with LIN7 2, MAGUK p55 family member OS=Sus scrofa OX=9823 GN=PALS2 PE=1 SV=1 CANONICAL=A0A4X1U2R8-1" }, "locus": { "chromosome": "18", "start_pos": 47656997, "end_pos": 47593314, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018198.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018198.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017707.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017707.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D2A532", "url": "https://www.uniprot.org/uniprotkb/A0A8D2A532" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M6E2-1", "protein_name": "MAGUK p55 subfamily member 2", "gene_name": "Mpp6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEILEDISPLISVDENVAELVGILKEPHFQSLLEAHDIVASKCYDSPPSSPEMNNSSLNNQLLPVDAIRILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYRDTVTPQQSYTNMERHPAHIRQVFVKCHFDYNPFNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISNKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPARFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSILEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQRAYNHYFDLIIVNDNLDKAFEKLQTAIEKLRMEPQWVPISWVY", "length": 554 }, "evidence": [ { "id": "A0A4X1U2R8", "url": "https://omabrowser.org/oma/group/A0A4X1U2R8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0XCJ9-1", "protein_name": "Protein associated with LIN7 2, MAGUK p55 family member", "gene_name": "MPP6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQQVLDNLTDLPTSTGAEEIDLIFLKGIMENPIVRSLAKAHERLEDSKLEAVSDNNLELVNEILEDISPLINKDENIAELVGILKEPHFQSLLEAHDIVASKCYDSPPSSPEVNNSSVNNQIVPVDAIRILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYRDTVIPQQVFVKCHFDYNPYNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISSKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPTRFGTTVPFTSRKPRDDEKDGQAYRFVSRAEMEMDIKAGRYLEHGEYEGNLYGTKIDSILEVVQTGRTCILDVNPQALKILRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDTDLKKTVDESARIQRAYNHYFDLTIVNDNLDKAFEKLQTAIEKLRLEPQWVPISWVY", "length": 540 }, "evidence": [ { "id": "A0A4X1U2R8", "url": "https://omabrowser.org/oma/group/A0A4X1U2R8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AC58HFX7-1", "protein_name": "MAGUK p55 subfamily member 6a isoform X2", "gene_name": "pals2a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNRQLIQHVFMQRMPFQPQPIFGKHIHTHTHTHTHSLSYTMDNLAYPIHLYRMSLDCAVNRSTWRKPTRTQGKHANSTQKSQLSQGFSVHVFQNRVSRDSVNCPQIYFAGAWFSLLLKTNFVLAVNLPCNIETMTVSNAKSGTAMQQVLDNLKELPPSTGAKDIDLIFLRGIMESPIVRSLAKAHERLEDVKLEAVQSNNVELVSEILSDMSSLIIRDESAAELSNILKEPHFQSLLEAHDKVASKSYEAPPTSTNSTSMSSSSLMPADTVRMISIQKKAGEPLGVTFRVEEGDLVIARVLHGSMIDRQGMLHAGDVIREVNGREVGKDPMALQHMLRDCNGSITLKILPSYKDTPPPAQVYLKPHFNYNPNTDNLIPCREAGLAFSKGDILHIVNKEDPNWWQACNINGGHTGLIPSQFLEEKRKAFVRRDLDGSGILCGTLTGKKKKKKMMYLTAKNAEFDRHELQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRLIVLNPLRYGTTVPFTSRRPRDDEKDGQSYCFVSREEMEMDIKASRYLEHGEYDGNLYGTKMDSIHEVVRAGRTCILDVNPQALKVLKTSEFMPFVVFIAAPELDTLRAMHKAVVDAGITTKLLTETDLKKTVDESARIKRAYNHYFDLTIVNDNLDKAFEKLQAAVEQLTTQPQWVPVNWVY", "length": 683 }, "evidence": [ { "id": "A0A4X1U2R8", "url": "https://omabrowser.org/oma/group/A0A4X1U2R8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B5DFE0-1", "protein_name": "MAGUK p55 subfamily member 2", "gene_name": "Pals2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTATEAAMWRPHWIPAFQQGRKHPLEMQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEILEDITPLISVDENVAELVGILKEPHFQSLLEAHDIVASKCYESPPSSPEMNIPSLNNQLLPVDAIRILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYRDTIAPQQVFVKCHFDYNPFNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISNKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPARFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIGSILDVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQRAYNHYFDLIIVNDNLDKAFENLQTAIEKLRTEPQWVPISWVY", "length": 566 }, "evidence": [ { "id": "A0A4X1U2R8", "url": "https://omabrowser.org/oma/group/A0A4X1U2R8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7KT16-1", "protein_name": "Varicose, isoform B", "gene_name": "vari", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MVRWSARSRRQARQDKVELLARNNKVNGEDDTSDNAAFRNSTDLSDHDEIFLKGLLRSNSNTPHKELMLNPTEPQPVPLFLPAHLNNKPICDDIIRKFSPSRRLESRELAKLLAQPHFRALLRAHDEIGALYEQRLKAAGGSTSQLEIASQRQTGGYLFTEDVLNTKMPVETIKMVGLRRDPSKPLGLTVELDEFKQLVVARILAGGVIDKQSMLHVGDVILEVNGTPVRTPDELQVEVSRAKENLTLKIGPNVDEEIKSGRYTVSGGQVKQNGIASLETGKKLTCYMRALFTYNPSEDSLLPCRDIGLPFKSGDILQIINVKDPNWWQAKNITAESDKIGLIPSQELEERRKAFVAPEADYVHKIGICGTRISKRKRKTMYRSVANCEFDKAELLLYEEVTRMPPFRRKTLVLIGVSGVGRRTLKNRLINSDVDKFGAVIPHTSRPKRALEENGSSYWFMDREEMEEAVRNNEFLEYGEHNGNLYGTHLQSIKDVINSGRMCILDCAPNALKILHNSQELMPFVIFVAAPGMEQLKTIYADRRATGSNRNLSFDRQSSIRFSSRRARTLESLASLYEDDDLVATVEESSFVQRKYEKYFDMVIVNEDFDETFRQVVETLDQMSHEEQWVPVNWIY", "length": 636 }, "evidence": [ { "id": "A0A4X1U2R8", "url": "https://omabrowser.org/oma/group/A0A4X1U2R8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9JLB0-1", "protein_name": "Protein PALS2", "gene_name": "Pals2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEILEDITPLISVDENVAELVGILKEPHFQSLLEAHDIVASKCYDSPPSSPEMNIPSLNNQLPVDAIRILGIHKKAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYRDTITPQQSYVNMERHPAHVRQVFVKCHFDYNPFNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISNKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPARFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSILEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQRAYNHYFDLIIVNDNLDKAFEKLQTAIEKLRMEPQWVPISWVY", "length": 553 }, "evidence": [ { "id": "A0A4X1U2R8", "url": "https://omabrowser.org/oma/group/A0A4X1U2R8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NZW5-1", "protein_name": "Protein PALS2", "gene_name": "PALS2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEILEDITPLINVDENVAELVGILKEPHFQSLLEAHDIVASKCYDSPPSSPEMNNSSINNQLLPVDAIRILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYRDTITPQQVFVKCHFDYNPYNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISSKKKKKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPTRFGTTVPFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIDSILEVVQTGRTCILDVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQRAYNHYFDLIIINDNLDKAFEKLQTAIEKLRMEPQWVPISWVY", "length": 540 }, "evidence": [ { "id": "A0A4X1U2R8", "url": "https://omabrowser.org/oma/group/A0A4X1U2R8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U2R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U2R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8" } ], "pmid": "" }, { "name": "organelle", "id": "GO:0043226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043226", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U2R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U2R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" }, { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1U2R8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8" }, { "id": "PS50052", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50052" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Guanylate kinase-like", "eco_id": "ECO_0000259", "start_pos": 352, "end_pos": 539, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1U2R8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8" }, { "id": "PS51022", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51022" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L27", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 48, "start_aa": "Met", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1U2R8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 130, "end_pos": 209, "start_aa": "Ile", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1U2R8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U2R8" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 229, "end_pos": 298, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 }, { "start_pos": 115, "end_pos": 117 }, { "start_pos": 196, "end_pos": 198 }, { "start_pos": 7, "end_pos": 9 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { 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"count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1U346-1", "uniprot_ac": "A0A4X1U346", "uniprot_id": "A0A4X1U346_PIG", "mass": { "chemical_mass": 13417.0, "monoisotopic_mass": 13417.0 }, "refseq": { "ac": "XP_003362182", "name": "BLOC-1 related complex subunit 8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003362182" }, "gene_names": [ { "name": "BORCS8", "type": "recommended", "evidence": [ { "id": "A0A4X1U346", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U346" } ] }, { "name": "BORCS8", "type": "synonym", "evidence": [ { "id": "XP_003362182", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003362182" } ] }, { "name": "MEF2BNB", "type": "synonym", "evidence": [ { "id": "XP_003362182", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003362182" } ] } ], "protein_names": [ { "name": "BLOC-1 related complex subunit 8", "type": "synonym", "evidence": [ { "id": "XP_003362182", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003362182" }, { "id": "A0A4X1U346", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U346/entry#names_and_taxonomy" } ] }, { "name": "MEF2B neighbor", "type": "synonym", "evidence": [ { "id": "XP_003362182", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003362182" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U346", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U346" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BORCS8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U346", "locus": { "chromosome": "2", "start_pos": 58698173, "end_pos": 58684543, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000044084", "url": "https://www.ensembl.org/id/ENSSSCG00000044084" } ] } } ], "crossref": [ { "id": "A0A4X1U346", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1U346", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000044084", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044084", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100620218", "url": "https://www.ncbi.nlm.nih.gov/gene/100620218", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620218", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620218", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1U346", "url": "https://www.orthodb.org/?gene=A0A4X1U346", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1U5U8", "url": "https://www.orthodb.org/?gene=A0A4X1U5U8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21146", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21146", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21146:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21146:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10167", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10167", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003362182", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003362182", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1U346", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U346", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U346-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U346-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U5U8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5U8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U5U8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5U8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN89", "database": "UniProtKB", "categories": [ 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"header": "tr|A0A4X1U455-1|A0A4X1U455_PIG Isoform 1 of Zinc finger protein 581 OS=Sus scrofa OX=9823 GN=ZNF581 PE=4 SV=1 CANONICAL=A0A4X1U455-1" }, "locus": { "chromosome": "6", "start_pos": 59766091, "end_pos": 59765498, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040073.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040073.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033389.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033389.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 6, "start_aa": "Thr", "end_pos": 6, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr6", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": 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"taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8B3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WLS", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3", "locus": { "chromosome": "6", "start_pos": 144555880, "end_pos": 144399926, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003795", "url": "https://www.ensembl.org/id/ENSSSCG00000003795" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003795", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003795", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516916", "url": "https://www.ncbi.nlm.nih.gov/gene/100516916", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009551", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009551", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516916", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516916", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GQWKWDE", "url": "https://omabrowser.org/oma/group/GQWKWDE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1U8B3", "url": "https://www.orthodb.org/?gene=A0A4X1U8B3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13449", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13449", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13449:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13449:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06664", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06664", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21883", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21883", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3238698", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3238698", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003482121", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482121", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1U477", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U477", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U477-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U477-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U4A7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U4A7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U4A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U4A7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U8B3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U8B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBZ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FE25", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FE25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FE25-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FE25-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S829", "url": "https://www.uniprot.org/uniprotkb/F1S829", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S829-1", "url": "https://www.uniprot.org/uniprotkb/F1S829-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGAIIENMSTKKLCIVGGILLVFQIIAFLVGGLIAPGPTTAVSYMSVKCVDVRKNHHKTKWLMPWGPNQCDKIRDIEEAIPREIEANDIVFSVHIPLPAMEMSPWFQFMLFILQLDIAFKLNNQIRENAEVSMDVSLAYRDDMVAEWTEMAHERVPRKLKCTFTSPKTPEHEGRYYECDVLPFMEIGSVAHKYYLLNIRLPVNEKKKINVGIGEIKDIRLVGIHQNGGFTKVWFAMKTFLTPSIFIIMVWYWRRITMMSRPPVLLEKVIFALGISMTFINIPVEWFSIGFDWTWMLLFGDIRQGIFYAMLLSFWIIFCGEHMMDQHERNHIAGYWKQVGPIAVGSFCLFIFDMCERGVQLTNPFYSIWTTDVGTELAMAFIIVAGICLCLYFLFLCFMVFQVFRNISGKQSSLPAMSKVRRLHYEGLIFRFKFLMLITLACAAMTVIFFIVSQVTEGHWKWGGVTVQVNSAFFTGIYGMWNLYVFALMFLYAPSHKNYGEDQSNGDLGVHSGEELQLTTTITHVDGPTEIYKLTRKEAQE", "length": 541, "header": "tr|A0A4X1U8B3-1|A0A4X1U8B3_PIG Isoform 1 of Wnt ligand secretion mediator OS=Sus scrofa OX=9823 GN=WLS PE=3 SV=1 CANONICAL=A0A4X1U8B3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1U477-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3/entry#A0A4X1U477-1", "sequence": { "sequence": "MSVKCVDVRKNHHKTKWLMPWGPNQCDKIRDIEEAIPREIEANDIVFSVHIPLPAMEMSPWFQFMLFILQLDIAFKLNNQIRENAEVSMDVSLAYRDDMVAEWTEMAHERVPRKLKCTFTSPKTPEHEGRYYECDVLPFMEIGSVAHKYYLLNIRLPVNEKKKINVGIGEIKDIRLVGIHQNGGFTKVWFAMKTFLTPSIFIIMVWYWRRITMMSRPPVLLEKVIFALGISMTFINIPVEWFSIGFDWTWMLLFGDIRQGIFYAMLLSFWIIFCGEHMMDQHERNHIAGYWKQVGPIAVGSFCLFIFDMCERGVQLTNPFYSIWTTDVGTELAMAFIIVAGICLCLYFLFLCFMVFQVFRNISGKQSSLPAMSKVRRLHYEGLIFRFKFLMLITLACAAMTVIFFIVSQVTEGHWKWGGVTVQVNSAFFTGIYGMWNLYVFALMFLYAPSHKNYGEDQSNGDLGVHSGEELQLTTTITHVDGPTEIYKLTRKEAQE", "length": 496, "header": "tr|A0A4X1U477-1|A0A4X1U8B3_PIG Computationally mapped isoform of Wnt ligand secretion mediator OS=Sus scrofa OX=9823 GN=WLS PE=3 SV=1 CANONICAL=A0A4X1U8B3-1" }, "locus": { "chromosome": "6", "start_pos": 144528698, "end_pos": 144466388, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050984.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050984.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039148.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039148.1" } ] } }, { "isoform_ac": "A0A4X1U4A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3/entry#A0A4X1U4A7-1", "sequence": { "sequence": "MAGAIIENMSTKKLCIVGGILLVFQIIAFLVGGLIGENAEVSMDVSLAYRDDMVAEWTEMAHERVPRKLKCTFTSPKTPEHEGRYYECDVLPFMEIGSVAHKYYLLNIRLPVNEKKKINVGIGEIKDIRLVGIHQNGGFTKVWFAMKTFLTPSIFIIMVWYWRRITMMSRPPVLLEKVIFALGISMTFINIPVEWFSIGFDWTWMLLFGDIRQGIFYAMLLSFWIIFCGEHMMDQHERNHIAGYWKQVGPIAVGSFCLFIFDMCERGVQLTNPFYSIWTTDVGTELAMAFIIVAGICLCLYFLFLCFMVFQVFRNISGKQSSLPAMSKVRRLHYEGLIFRFKFLMLITLACAAMTVIFFIVSQVTEGHWKWGGVTVQVNSAFFTGIYGMWNLYVFALMFLYAPSHKNYGEDQSNGDLGVHSGEELQLTTTITHVDGPTEIYKLTRKEAQE", "length": 450, "header": "tr|A0A4X1U4A7-1|A0A4X1U4A7_PIG Computationally mapped isoform of Wnt ligand secretion mediator OS=Sus scrofa OX=9823 GN=WLS PE=3 SV=1 CANONICAL=A0A4X1U8B3-1" }, "locus": { "chromosome": "6", "start_pos": 144528698, "end_pos": 144424097, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069028.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069028.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073395.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073395.1" } ] } }, { "isoform_ac": "A0A4X1U8B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3/entry#A0A4X1U8B3-1", "sequence": { "sequence": "MAGAIIENMSTKKLCIVGGILLVFQIIAFLVGGLIAPGPTTAVSYMSVKCVDVRKNHHKTKWLMPWGPNQCDKIRDIEEAIPREIEANDIVFSVHIPLPAMEMSPWFQFMLFILQLDIAFKLNNQIRENAEVSMDVSLAYRDDMVAEWTEMAHERVPRKLKCTFTSPKTPEHEGRYYECDVLPFMEIGSVAHKYYLLNIRLPVNEKKKINVGIGEIKDIRLVGIHQNGGFTKVWFAMKTFLTPSIFIIMVWYWRRITMMSRPPVLLEKVIFALGISMTFINIPVEWFSIGFDWTWMLLFGDIRQGIFYAMLLSFWIIFCGEHMMDQHERNHIAGYWKQVGPIAVGSFCLFIFDMCERGVQLTNPFYSIWTTDVGTELAMAFIIVAGICLCLYFLFLCFMVFQVFRNISGKQSSLPAMSKVRRLHYEGLIFRFKFLMLITLACAAMTVIFFIVSQVTEGHWKWGGVTVQVNSAFFTGIYGMWNLYVFALMFLYAPSHKNYGEDQSNGDLGVHSGEELQLTTTITHVDGPTEIYKLTRKEAQE", "length": 541, "header": "tr|A0A4X1U8B3-1|A0A4X1U8B3_PIG Isoform 1 of Wnt ligand secretion mediator OS=Sus scrofa OX=9823 GN=WLS PE=3 SV=1 CANONICAL=A0A4X1U8B3-1" }, "locus": { "chromosome": "6", "start_pos": 144528698, "end_pos": 144424097, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080486.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080486.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063787.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063787.1" } ] } }, { "isoform_ac": "A0A5G2RBZ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3/entry#A0A5G2RBZ9-1", "sequence": { "sequence": "MAGAIIENMSTKKLCIVGGILLVFQIIAFLVGGLIGPTTAVSYMSVKCVDVRKNHHKTKWLMPWGPNQCDKIRDIEEAIPREIEANDIVFSVHIPLPAMEMSPWFQFMLFILQLDIAFKLNNQIRENAEVSMDVSLAYRDDMVAEWTEMAHERVPRKLKCTFTSPKTPEHEGRYYECDVLPFMEIGSVAHKYYLLNIRLPVNEKKKINVGIGEIKDIRLVGIHQNGGFTKVWFAMKTFLTPSIFIIMVWYWRRITMMSRPPVLLEKVIFALGISMTFINIPVEWFSIGFDWTWMLLFGDIRQGIFYAMLLSFWIIFCGEHMMDQHERNHIAGYWKQVGPIAVGSFCLFIFDMCERGVQLTNPFYSIWTTDVGTELAMAFIIVAGICLCLYFLFLCFMVFQVFRNISGKQSSLPAMSKVRRLHYEGLIFRFKFLMLITLACAAMTVIFFIVSQVTEGHWKWGGVTVQVNSAFFTGIYGMWNLYVFALMFLYAPSHKNYGEDQSNGMQFPCKSREDCTLFVSELYQELTTLKYFIINNIFGI", "length": 540, "header": "tr|A0A5G2RBZ9-1|A0A4X1U8B3_PIG Computationally mapped isoform of Wnt ligand secretion mediator OS=Sus scrofa OX=9823 GN=WLS PE=3 SV=1 CANONICAL=A0A4X1U8B3-1" }, "locus": { "chromosome": "6", "start_pos": 144555877, "end_pos": 144424097, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083017.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083017.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071722.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071722.1" } ] } }, { "isoform_ac": "A0A8W4FE25-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3/entry#A0A8W4FE25-1", "sequence": { "sequence": "MAGAIIENMSTKKLCIVGGILLVFQIIAFLVGGLIAPGPTTAVSYMSVKCVDVRKNHHKTKWLMPWGPNQCDKIRDIEEAIPREIEANDIVFSVHIPLPAMEMSPWFQFMLFILQLDIAFKLNNQI", "length": 126, "header": "tr|A0A8W4FE25-1|A0A4X1U8B3_PIG Computationally mapped isoform of Wnt ligand secretion mediator OS=Sus scrofa OX=9823 GN=WLS PE=3 SV=1 CANONICAL=A0A4X1U8B3-1" }, "locus": { "chromosome": "6", "start_pos": 144466630, "end_pos": 144424097, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106171.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106171.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077671.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077671.1" } ] } }, { "isoform_ac": "F1S829-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3/entry#F1S829-1", "sequence": { "sequence": "MAGAIIENMSTKKLCIVGGILLVFQIIAFLVGGLIAPGPTTAVSYMSVKCVDVRKNHHKTKWLMPWGPNQCDKIRDIEEAIPREIEANDIVFSVHIPLPAMEMSPWFQFMLFILQLDIAFKLNNQIRENAEVSMDVSLAYRDDMVAEWTEMAHERVPRKLKCTFTSPKTPEHEGRYYECDVLPFMEIGSVAHKYYLLNIRLPVNEKKKINVGIGEIKDIRLVGIHQNGGFTKVWFAMKTFLTPSIFIIMVWYWRRITMMSRPPVLLEKVIFALGISMTFINIPVEWFSIGFDWTWMLLFGDIRQGIFYAMLLSFWIIFCGEHMMDQHERNHIAGYWKQVGPIAVGSFCLFIFDMCERGVQLTNPFYSIWTTDVGTELAMAFIIVAGICLCLYFLFLCFMVFQVFRNISGKQSSLPAMSKVRRLHYEGLIFRFKFLMLITLACAAMTVIFFIVSQVTEGHWKWGGVTVQVNSAFFTGIYGMWNLYVFALMFLYAPSHKNYGEDQSNGDLGVHSGEELQLTTTITHVDGPTEIYKLTRKEALSLEWGACQRAPCANKCSVSELWFLGPAAWTFVSLPPDGRSWRKSPIATNVLCMITKPLV", "length": 599, "header": "tr|F1S829-1|F1S829_PIG Computationally mapped isoform of Wnt ligand secretion mediator OS=Sus scrofa OX=9823 GN=WLS PE=3 SV=5 CANONICAL=A0A4X1U8B3-1" }, "locus": { "chromosome": "6", "start_pos": 144528925, "end_pos": 144424097, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004200.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004200.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004106.5", "url": "https://www.ensembl.org/id/ENSSSCP00000004106.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 40, "start_aa": "Thr", "end_pos": 40, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr40", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RBZ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBZ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516916", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516916", "resource": "KEGG Pathway" }, { "id": "R-SSC-3238698", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3238698", "resource": "Reactome", "description": "WNT ligand biogenesis and trafficking" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IGC0-1", "protein_name": "Protein wntless homolog isoform X1", "gene_name": "Wls", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGAIIENMSTKKLCIVGGILLVFQIVAFLVGGLIAPAPTTAVPYMSVKCVDVRKNHHKTRWLVPWGPNKCDKIRDIEEAIPREIEANDIVFSVHIPLPSMEMSPWFQFMLFILQLDIAFKLNNQIRENAEVSMDVSLGYRDDMFSEWTEMAHERVPRKLKCTFTSPKTLEHEGRHYECDVLPFMEIGSVAHKYYLLNIRLPVNEKKKINVGIGEIKDIRLVGIHQNGGFTKVWFAMKTFLTPSIFIIMVWYWRRISMMSRPPVLLEKVIFALGISMTFINIPVEWFSIGFDWTWMLLFGDIRQGIFYAMLLSFWIIFCGEHMMDQHERNRISGYWKQVGPIAVGSFCLFIFDMCERGVQLTNPFYSIWTTDVGTELAMAFIIVAGICLCLYFLFLCFMVFQVFRNISGKQSSLPAMSKVRRLHYEGLIFRFKFLMLITLACAAMTVIFFIVSQVTEGHWKWGGVTVQVNSAFFTGIYGMWNLYVFALMFLYAPSHKNYGEDQSNGDLGVHSGEELQLTTTITHVDGPTEIYKLTRKEAQE", "length": 541 }, "evidence": [ { "id": "A0A4X1U8B3", "url": "https://omabrowser.org/oma/group/A0A4X1U8B3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1P376-1", "protein_name": "Wntless Wnt ligand secretion mediator", "gene_name": "WLS", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGAIIENMSTRKLCIVGGILLVFQVIAFLVGGLIAPSPTTAVPYMSVKCIDVRKNHHKTKWLMPWGPNHCEKLKDFDEAVSRQIEANDIVFAVHIPLPSKEMSPWFQFMLFIMQLDIAFKMDNDLKENAEITLDVSLAYRDDMFNDWEEIAHAIEIRKLKCTFGSPKTLESEGRHYDCDFLPFMEIGSVAHKYYLINIRLPVNERKGINVGIGEIKDIRLVGIHQNGGFTKVWFAMKTFLTPSILIIMVWYWRRITLMTRAPVLLEKVIFALGISMTFINIPVEWFSIGFDWTWMLLFGDIRQGIFYAMLLSFWIIFCGEHMMDQNERNRLSGYWKQVGPIAVGSFCLFIFDMCERGVQLKNPFYSIWTTEVGTELAMAFIIVAGICLCLYFLFLCFMVFQVFRNISGKQSSLPAMSKARRLHYEGLIFRFKFLMLITLACAAMTVIFFIVSQVTEGHWKWGDITIQVNSAFFTGIYGMWNLYVFALMFLYAPSHKNYGEDQSNGDLGVSSGEELQLTTTITHVDGPTEVYKLARKEAQE", "length": 541 }, "evidence": [ { "id": "A0A4X1U8B3", "url": "https://omabrowser.org/oma/group/A0A4X1U8B3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F2Z4U3-1", "protein_name": "Protein wntless homolog", "gene_name": "wls", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAGAIIENMSTKKLVILGVILMLFQAFSFMVGGLIAPSPTAAVSYLATKCVDNEKTHHKNPKWFTPWGPDQCSKIKDFDEAMVKKIEANNIVFAIHIPPPNTEMSTWFQFLLLILHFDIAFKIQNQIADGASITIDVRLAYRDDKLSEWTQMAHSVEQRKLSCNFTAAKTIENEGRLYDCDLLPFMELGSVAHKYYLLNVRLPVNERKKVNIGIGEINDMRLVGIHQNGGFTKVWFAMKTFLTPSVLIIMIWYWKRITQMTRPPVLLEKVIFALGISMTFINIPVEWFSVGFDWTWMLLFGDIRQGIFYAMLLSFWIIFCGEHLMDQTERNRFSVYWKQVIPIVFGSFCLFIFDMCERGVQLKNPFYSIWASDVGTELAMAFIIVAGICACLYFLFLCFMVFQVFRNISGKRSCLPAMTKARRLHYEGLIFRFKFLMLVTLACAAMTVIFFIISQVSEGHWLWGGHTVQVNSAFFTGIYGMWNLYVFALMFLYAPSHKRYGDEQSSADQAGNSGEDTQLTTTITHVDGPTEIYKMTGKEAQE", "length": 542 }, "evidence": [ { "id": "A0A4X1U8B3", "url": "https://omabrowser.org/oma/group/A0A4X1U8B3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5T9L3-1", "protein_name": "Protein wntless homolog", "gene_name": "WLS", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGAIIENMSTKKLCIVGGILLVFQIIAFLVGGLIAPGPTTAVSYMSVKCVDARKNHHKTKWFVPWGPNHCDKIRDIEEAIPREIEANDIVFSVHIPLPHMEMSPWFQFMLFILQLDIAFKLNNQIRENAEVSMDVSLAYRDDAFAEWTEMAHERVPRKLKCTFTSPKTPEHEGRYYECDVLPFMEIGSVAHKFYLLNIRLPVNEKKKINVGIGEIKDIRLVGIHQNGGFTKVWFAMKTFLTPSIFIIMVWYWRRITMMSRPPVLLEKVIFALGISMTFINIPVEWFSIGFDWTWMLLFGDIRQGIFYAMLLSFWIIFCGEHMMDQHERNHIAGYWKQVGPIAVGSFCLFIFDMCERGVQLTNPFYSIWTTDIGTELAMAFIIVAGICLCLYFLFLCFMVFQVFRNISGKQSSLPAMSKVRRLHYEGLIFRFKFLMLITLACAAMTVIFFIVSQVTEGHWKWGGVTVQVNSAFFTGIYGMWNLYVFALMFLYAPSHKNYGEDQSNGDLGVHSGEELQLTTTITHVDGPTEIYKLTRKEAQE", "length": 541 }, "evidence": [ { "id": "A0A4X1U8B3", "url": "https://omabrowser.org/oma/group/A0A4X1U8B3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6DID7-1", "protein_name": "Protein wntless homolog", "gene_name": "Wls", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGAIIENMSTKKLCIVGGILLVFQIVAFLVGGLIAPAPTTAVPYTAIKCVDVRKNHHKTRWLAPWGPNKCDKIRDIEEAIPREIEANDIVFSVHIPLPSMEMSPWFQFMLFILQLDIAFKLNNQIRENAEISMDVSLGYRDDMFSEWTEMAHERVPRKLKCTFTSPKTPEHEGRYYNCDVLPFMEIGSVAHKYYLLNIRLPVNEKKKINVGIGEIKDIRLVGIHQNGGFTKVWFAMKTFLTPSIFIIMVWYWRRITMMSRPPVLLEKVIFALGISMTFINIPVEWFSIGFDWTWMLLFGDIRQGIFYAMLLSFWIIFCGEHMMDQHERNHIAGYWKQVGPIAVGSFCLFIFDMCERGVQLTNPFYSIWTTDVGTELAMAFIIVAGICLCLYFLFLCFMVFQVFRNISGKQSSLPAMSKVRRLHYEGLIFRFKFLMLITLACAAMTVIFFIVSQVSEGHWKWGGVTVQVSSAFFTGIYGMWNLYVFALMFLYAPSHKNYGEDQSNGDLGVHSGEELQLTTTITHVDGPTEIYKLTRKEAQE", "length": 541 }, "evidence": [ { "id": "A0A4X1U8B3", "url": "https://omabrowser.org/oma/group/A0A4X1U8B3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6P689-1", "protein_name": "Protein wntless homolog", "gene_name": "Wls", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGAIIENMSTKKLCIVGGILLVFQIVAFLVGGLIAPAPTTAVSYVAAKCVDVRKNHHKTRWLMPWGPNKCNKINDFEEAIPREIEANDIVFSVHIPLPSMEMSPWFQFMLFILQIDIAFKLNNQIRENAEVSMDVSLGYRDDMFSEWTEMAHERVPRKLRCTFTSPKTPEHEGRHYECDVLPFMEIGSVAHKYYLLNIRLPVNEKKKINVGIGEIKDIRLVGIHQNGGFTKVWFAMKTFLTPSIFIIMVWYWRRITMMSRPPVLLEKVIFALGISMTFINIPVEWFSIGFDWTWMLLFGDIRQGIFYAMLLSFWIIFCGEHMMDQHERNHIAGYWKQVGPIAVGSFCLFIFDMCERGVQLTNPFYSIWTTDVGTELAMAFIIVAGICLCLYFLFLCFMVFQVFRNISGKQSSLPAMSKVRRLHYEGLIFRFKFLMLITLACAAMTVIFFIVSQVTEGHWKWGGVTVQVSSAFFTGIYGMWNLYVFALMFLYAPSHKNYGEDQSNGDLGVHSGEELQLTTTITHVDGPTEIYKLTRKEAQE", "length": 541 }, "evidence": [ { "id": "A0A4X1U8B3", "url": "https://omabrowser.org/oma/group/A0A4X1U8B3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q95ST2-1", "protein_name": "Protein wntless", "gene_name": "wls", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSGTILENLSGRKLSILVATLLLCQVLCFLLGGLYAPLPAGHVTVLGSLCREDHARQNDTSFLLYSRGAGACIPVTREEVEQDSTKMANELVHVFQMPLPRDLRDLDYSRWQQNLIGVLQVEFGYDSSSELREPPRELQLTIDMRLAYRNKGDPDNGWKLYAHGVEHRYLDCVTSHVGPTETLYSCDMIPLFELGALHHSFYLLNLRFPLDTPSQMNLQFGHMHDLTLTAIHQNGGFTQIWLLLKTMLFPFVVGIMIWFWRRVHLLQRSPALLEYMLIYLGAALTFLNLPLEYLSLVYEMPYMLLLSDIRQGIFYAMLLTFWLVFAGEHMLIQDAPNKSTIRSRYWKHLSAVVVGCISLFVFDICERGVQLRNPFYSIWTTPLGAKVAMTFIVLAGVSAAIYFLFLCYMIWKVFRNIGDKRTSLPSMSQARRLHYEVPLDQKVEDWAGIVYFYTKAFFFQLHKANESKGLIYRFKFLMLATLVCAALTVAGFIMGQMAEGQWDWNDNVAIQPTSAFLTGVYGMWNIYIFALLILYAPSHKQWPTMHHSDETTQSNENIVASAASEEIEFSHLPSDSNPSEISSLTSFTRKVAFD", "length": 594 }, "evidence": [ { "id": "A0A4X1U8B3", "url": "https://omabrowser.org/oma/group/A0A4X1U8B3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8B3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8B3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" } ], "pmid": "" }, { "name": "organelle membrane", "id": "GO:0031090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031090", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8B3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" } ], "pmid": "" }, { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8B3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8B3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8B3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8B3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "Wnt signaling pathway", "id": "GO:0016055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016055", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8B3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" } ], "pmid": "" }, { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8B3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" } ], "pmid": "" }, { "name": "Wnt protein secretion", "id": "GO:0061355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061355", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8B3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" } ], "pmid": "" }, { "name": "positive regulation of canonical Wnt signaling pathway", "id": "GO:0090263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090263", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8B3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" } ], "pmid": "" }, { "name": "positive regulation of Wnt protein secretion", "id": "GO:0061357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061357", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8B3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "Wnt-protein binding", "id": "GO:0017147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017147", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8B3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 406, "end_pos": 408, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1U8B3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" }, { "id": "PF21883", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21883" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Wntless GOLD", "eco_id": "ECO_0000259", "start_pos": 48, "end_pos": 226, "start_aa": "Val", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1U8B3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8B3" }, { "id": "PF06664", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06664" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Wntless-like transmembrane", "eco_id": "ECO_0000259", "start_pos": 227, "end_pos": 496, "start_aa": "Asn", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 40 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 406, "end_pos": 408 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1U482-1", "uniprot_ac": "A0A4X1U482", "uniprot_id": "A0A4X1U482_PIG", "mass": { "chemical_mass": 9151.0, "monoisotopic_mass": 9151.0 }, "refseq": {}, "gene_names": [ { "name": "C5orf58", "type": "recommended", "evidence": [ { "id": "A0A4X1U482", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U482" } ] } ], "protein_names": [ { "name": "Chromosome 5 open reading frame 58", "type": 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"https://www.uniprot.org/uniprotkb/A0A4X1U4C8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQKPLRLLACGDVEGKFDILFNRVRAIQKKSGNFDLLLCVGNFFGSTPDTEWEEYKTGVKKAPIQTYVLGANNQETVKYFQDVDGCELAENITYLGRKGIFTGSSGLQIVYLSGTESLNEPVPGYSFSPKDVSSLRMMLCSTPQFKGVDILLTSPWPKYVGNFGNSSGEVDTKKCGSALISSLAAGLKPRYHFAALEKTYYERLPYRNHIVLQENAQHATRFIALANVGNPEKKKYLYAFSIVPMKLMDAAELVKQPPDVTENPYRKSGKEASIGKQIPAPEEESACQFFFDLNEKQGRKRSSTGRDTKSSPHPKQPRKPPQPPGPCWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEKYKATLRRFFKSRGKRCVLFERNYKSHHLQLQVIPVPLSRCATDDIKDAFITQAQEQQIELLEIPEHSDIKQIAQPGAAYFYVELDTGEKLFHRIKKNFPLQFGREVLASEAILNIPDKSDWRQCQISKEEEETLARRFRKDFEPFDFTLDD", "length": 538, "header": "tr|A0A4X1U4C8-1|A0A4X1U4C8_PIG Isoform 1 of CWF19-like protein 1 OS=Sus scrofa OX=9823 GN=CWF19L1 PE=3 SV=1 CANONICAL=A0A4X1U4C8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1U4C8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U4C8/entry#A0A4X1U4C8-1", "sequence": { "sequence": "MAQKPLRLLACGDVEGKFDILFNRVRAIQKKSGNFDLLLCVGNFFGSTPDTEWEEYKTGVKKAPIQTYVLGANNQETVKYFQDVDGCELAENITYLGRKGIFTGSSGLQIVYLSGTESLNEPVPGYSFSPKDVSSLRMMLCSTPQFKGVDILLTSPWPKYVGNFGNSSGEVDTKKCGSALISSLAAGLKPRYHFAALEKTYYERLPYRNHIVLQENAQHATRFIALANVGNPEKKKYLYAFSIVPMKLMDAAELVKQPPDVTENPYRKSGKEASIGKQIPAPEEESACQFFFDLNEKQGRKRSSTGRDTKSSPHPKQPRKPPQPPGPCWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEKYKATLRRFFKSRGKRCVLFERNYKSHHLQLQVIPVPLSRCATDDIKDAFITQAQEQQIELLEIPEHSDIKQIAQPGAAYFYVELDTGEKLFHRIKKNFPLQFGREVLASEAILNIPDKSDWRQCQISKEEEETLARRFRKDFEPFDFTLDD", "length": 538, "header": "tr|A0A4X1U4C8-1|A0A4X1U4C8_PIG Isoform 1 of CWF19-like protein 1 OS=Sus scrofa OX=9823 GN=CWF19L1 PE=3 SV=1 CANONICAL=A0A4X1U4C8-1" }, "locus": { "chromosome": "14", "start_pos": 111387662, "end_pos": 111355444, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011542.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011542.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011241.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011241.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U4C8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U4C8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100151953", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151953", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IHC6-1", "protein_name": "CWF19-like protein 1", "gene_name": "Cwf19l1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAQQPLRLLACGDVDGKFDVLFNRVRTIQKKSGNFDLLLCVGNFFGSTQDAEWEEYKTGKKKAPIQTYVLGANNPETVQYFQDTDGCELAENITYLGRKGFFTGSSGLQIVYLSGTESLSEPVPSHSFSPKDVSSLRTMLCSASQFKGVDILLTSPWPKYVGNFGNSSGEVDTKKCGSALISSLAASLKPRYHFAALEKSYYERLPYRNHVVLQESTQHATRFIALANVGNAEKKKYLYAFSIVPMKLMAAAELVKQPPDVTENPYRESGKAAAIGKHVPAPQEEPACQFFFDLNEKQGRKRSSTGRDSKSPQAKQPRRPPQPPGPCWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEKYKATLKRFFKSRGKRCVLFERNYRSHHLQLQVIPVPLSCCVTDDIKDAFITQAQEQQIELLEIPEHSDIKQIAQPGAAYFYVELDTGEKLFHRIKKNFPLQFGREVLASEAILNIPDKADWRQCQISKEEEETLARRFRKDFEPFDFTLDD", "length": 537 }, "evidence": [ { "id": "A0A4X1U4C8", "url": "https://omabrowser.org/oma/group/A0A4X1U4C8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A1Z8J0-1", "protein_name": "CWF19-like protein 1 homolog", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MHQVGSTNMMKIQSIAQLSITMDAGTKILVVGDVRGRFKQLFQRVEQVNKKAGPFEILCCVGDFFGEDKQNEELIAYKNGFKHITVPTYILGPNQREHEKYFENLTDGEICTNLTYLGRRGVYTLSSGVKIAYLSGLEAQGTADSAGSEHEFTKADVIAVRNSCLVSKNCSTEYRGVDVLLTSQWPFGMQEKENATASKLVSFLCREIKPRYHFCAINGTHYESAPFRMPKDETTQFELCTRFISLAEVGNAEKAKYIYALSLKPVDKSRLLDLAQKTTNEIPCPFIGLDLGGAIGKNDSSENRQYFYDMDGGRRKRQGGDNNKRDKRPRIPQIEQDKCWFCLSSPDVEKHLIITVGEHFYLALAKGPINKHHVMILSTKHVPCAAQLSPDDWKELNKFKAALRKFFKTLGQVVCFTERHYKSVHLQINALAFEEGYAWKIKHSFEDKAEEFNLEFETLPALDSEKMLPEMGPYFLAELPDDSTLITRQMKHFPIHFARDVFCSENLLNCDEKVNWKDCLLDKDEEVAYVEDFRKAFAPFDFTDD", "length": 545 }, "evidence": [ { "id": "A0A4X1U4C8", "url": "https://omabrowser.org/oma/group/A0A4X1U4C8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "D3Z863-1", "protein_name": "CWF19-like protein 1", "gene_name": "Cwf19l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQKPLRLLACGDVEGKFDVLFNRVRTIQKKSGNFDLLLCVGNFFGSTQDAAWEEYRTGSKKAPIQTYVLGANNQETANYFQDADGCELAENITYLGRKGVFTGSSGLQIVYLSGTESLDEPVPAYSFSPKDVSSLRTMLCSAPQFKGVDILLTSPWPKYVGSFGNSSGEVDTKQCGSALISSLAVSLKPRYHFAALEKSYYERLPYRNHVVLQESAQHATRFIALANVGNPEKKKYLYAFSIVPMKLMAVAELVKQPPDVTENPYRESGKQAAAGKQIPAPQEESACQFFFDLNEKQGRKRSSTGRDNKPPHAKHPRKPPQPPGPCWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEKYKDTLKRFFKSRGKRCVLFERNYKSHHLQLQVIPVPLSCCVTDDIKDAFITQAQEQQIELLEIPEHSDIKQIAQPGAAYFYVELDTGEKLFHRIKKNFPLQFGREVLASEAILNIPEKADWRQCQTSKDEEEALARRFRKDFEPFDFTLDD", "length": 537 }, "evidence": [ { "id": "A0A4X1U4C8", "url": "https://omabrowser.org/oma/group/A0A4X1U4C8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54NJ5-1", "protein_name": "CwfJ family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METHKILVCGDIGGSFNALFKRVSTVNKSNGPFSLLLCVGSFFEPYHPTTNISNENNNNSNDADDKDENNNDNDNNNNNNNNNNSDDKDENELTFPKELQPYKDEIENVPIPTYFIAYSQSDFKYIKKFVNKETGELCKGITYLGKCGIKNISNLNIAYLSGKIDYPIKIQSNEENTIIKSEIDNIIKEGEDKRIDILLSNQWSRGVLNNVTSGIPTFLKTPYKIGIDGVKLVSQALTPAYHFSKNSFYFQRAPYYNTPTLKNKNPQPTRFLSLAPINNDKKEKYLFAMSYNPNKDINKDDITPNPFERKQRELDEHVSKKQRNSDEQQTNFFFNNTNNNYNNNNNRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNYNKRINNQQQQQQQLKQKHQDQSCWFCLSSPEVDSHLIVTIGDECYLAFPKGGMVEHNLLIVFTEHKPNFMSLNEEERKDVNLMIDYLREYFLDKYNQDIVIFERSISTKGGTDLHGHLQVIPIPKELSSTVKQSFIDHPLTKKYNMEFNDFKNDENSGKELKDKPYYLVFLPNSEQIYSVISKPDFQYGRKVMVDLLGIPEKLNWKDCVKTKEIETSETLKFRDEFQPFYDKKQPTDDDNNEDNTQ", "length": 630 }, "evidence": [ { "id": "A0A4X1U4C8", "url": "https://omabrowser.org/oma/group/A0A4X1U4C8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5RGJ5-1", "protein_name": "CWF19-like protein 1", "gene_name": "cwf19l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGDKPLRVLACGDVEGRINALFNRVNAIQKKSGQFDLLLCVGDFFGSSPEAEAEWATYKSGAKKAPIHTCILGAASQETVKYFPSSDGCELAENITCLGRRGIFTGASGLQIAYVSGREAHQEPAPSHCFTPKDITALVAPLLSNSKFRGVDILLTSQWPRGVCQYGNSPETDMKFCGVSSIADLADKLKPRYHFAGLEGVHYERLPYRNHVVLQENTQHVSRFIALATVNNPAKKKYLYAFNIIPMKNMDSTELVKQPQDVTENPYRKLMKDGKKERQSASMTDAQEEPASQFFFDLGQKNPQRQHGRKRQSDGDRPNQHKQPRRPPQPTGPCWFCLASPEVEKHLVISIGTHCYMALAKGGLTPDHVLLLPIGHYQSVVDLASEVVEEMEKYKSAFKKFCKSKGKRCVLFERNYRSQHLQLQAVPVPMEKCSTEDIKEAFMTQAEEQQMELMEIPAHTDLKQIAPPGTPYFYVELDTGDKLFYRIKKNFPLQFGREVLASEAVMNIPMRSDWRECKISREEEEDQAKQVRSDYEPFDFALDD", "length": 544 }, "evidence": [ { "id": "A0A4X1U4C8", "url": "https://omabrowser.org/oma/group/A0A4X1U4C8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q69YN2-1", "protein_name": "CWF19-like protein 1", "gene_name": "CWF19L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQKPLRLLACGDVEGKFDILFNRVQAIQKKSGNFDLLLCVGNFFGSTQDAEWEEYKTGIKKAPIQTYVLGANNQETVKYFQDADGCELAENITYLGRKGIFTGSSGLQIVYLSGTESLNEPVPGYSFSPKDVSSLRMMLCTTSQFKGVDILLTSPWPKCVGNFGNSSGEVDTKKCGSALVSSLATGLKPRYHFAALEKTYYERLPYRNHIILQENAQHATRFIALANVGNPEKKKYLYAFSIVPMKLMDAAELVKQPPDVTENPYRKSGQEASIGKQILAPVEESACQFFFDLNEKQGRKRSSTGRDSKSSPHPKQPRKPPQPPGPCWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEKYKATLRRFFKSRGKWCVVFERNYKSHHLQLQVIPVPISCSTTDDIKDAFITQAQEQQIELLEIPEHSDIKQIAQPGAAYFYVELDTGEKLFHRIKKNFPLQFGREVLASEAILNVPDKSDWRQCQISKEDEETLARRFRKDFEPYDFTLDD", "length": 538 }, "evidence": [ { "id": "A0A4X1U4C8", "url": "https://omabrowser.org/oma/group/A0A4X1U4C8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q84WU9-1", "protein_name": "Zinc finger CCCH domain-containing protein 64", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAPRILLCGDPLGRLNQLFKRVQSVSKSAGPFDALICVGQFFPDSPEILDEFLDYVEGRAQVPIPTYFTGDYGVVAPKILSTTSKKAENQGFKMDGLEVCHNLFWLRGSGKFSLHGLSVAYLSGRQSSESQFGKYSQDDVDALRALAEEPGGVDLFLTNEWPAGVTNRAAVSDIPVGISDSSCSDSTVSELVMEVKPRYHIAGSMGVFYAREPYLNAESTHVTRFIGLAQVGNKNKQKFLHALSPTPTSTMSPAELSAKPPKTTLWPYNLQDGAAESKKRPNDSDSDSQYWRYDVPKRQKSGSQGEKLCFKFVCSGSCPRGEDCHFQHNAEAREQCRRGVCLDLIIKGKCEKGPECSYKHEFQDESSIQRKPRSENANRSKECWFCLSSPSVESHLIVSVGESFYCALPKGSLVEDHILIIPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRVSHANLQVVPVPSSRARLLPNIFSLAAEKLGFKLVTKKFNDSTDGRKYLQKEYNAALGLFYVELPDGTVLSHTLEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLAEDFKKQFQEFDPCQ", "length": 596 }, "evidence": [ { "id": "A0A4X1U4C8", "url": "https://omabrowser.org/oma/group/A0A4X1U4C8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8CI33-1", "protein_name": "CWF19-like protein 1", "gene_name": "Cwf19l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAQKPLRLLACGDVEGKFDVLFNRVRTIQKKSGNFDLLLCVGNFFGSAQDAEWEEYKTGNKKAPIQTYVLGANNEETANYFQGADGCELAENITYLGRKGVFTGSSGLQIVYLSGTESLDEPVPAHSFSPKDVSSLRTMLCSASQFKGVDILLTSPWPKYVGSFGNSSGEVDTKNCGSALISSLAVSLKPRYHFAALEKSYYERLPYRNHVVLQESAQHATRFIALANVGNPEKKKYLYAFSIVPMKLMAVAELVKQPPDVTENPYRDSGKQAAGGKHIPAPQEESACQFFFDLSEKQGRKRPSTGRDTRPPHAKQPRKPPQPPGPCWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEKYKATLQRFFKSRGKRCVLFERNYRSHHLQLQVIPVPLSCCATDDIKDAFITQAQEQQIELLEIPEHSDIKQIAQPGAAYFYVELDTGEKLFHRIKKNFPLQFGREVLASEAILNIPEKADWRQCQTSKDEEEALARRFRKDFEPFDFTLDD", "length": 537 }, "evidence": [ { "id": "A0A4X1U4C8", "url": "https://omabrowser.org/oma/group/A0A4X1U4C8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U4C8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U4C8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "post-mRNA release spliceosomal complex", "id": "GO:0071014", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071014", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U4C8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U4C8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA lariat debranching enzyme activator activity", "id": "GO:0061632", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061632", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U4C8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U4C8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 166, "end_pos": 168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 92, "end_pos": 94, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1U4C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U4C8" }, { "id": "PF04677", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04677" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cwf19-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 322, "end_pos": 427, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1U4C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U4C8" }, { "id": "PF04676", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04676" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cwf19-like protein C-terminal", "eco_id": "ECO_0000259", "start_pos": 443, "end_pos": 535, "start_aa": "Gln", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 166, "end_pos": 168 }, { "start_pos": 92, "end_pos": 94 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U576", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U576" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein phosphatase inhibitor activity", "id": "GO:0004864", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004864", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U576", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U576" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": 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"https://www.ncbi.nlm.nih.gov/protein/XP_001926905" } ] } ], "protein_names": [ { "name": "FA complementation group I", "type": "synonym", "evidence": [ { "id": "A0A4X1U5C9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5C9/entry#names_and_taxonomy" } ] }, { "name": "Fanconi anemia group I protein", "type": "synonym", "evidence": [ { "id": "XP_001926905", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926905" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U5C9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5C9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FANCI", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5C9", "locus": { "chromosome": "7", "start_pos": 54889998, "end_pos": 54811027, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001837", "url": "https://www.ensembl.org/id/ENSSSCG00000001837" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001837", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001837", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11720", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11720", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156260", "url": "https://www.ncbi.nlm.nih.gov/gene/100156260", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026171", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026171", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029308", "url": 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"Enzyme and Pathway" ] }, { "id": "A0A4X1U5C9", "url": "https://www.orthodb.org/?gene=A0A4X1U5C9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21818", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21818", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21818:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21818:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14674", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14674", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14675", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14675", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14676", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14676", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14677", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14677", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14678", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14678", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14680", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14680", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6783310", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6783310", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001926905", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926905", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1U5C9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5C9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U5C9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5C9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKQ2", "url": "https://www.uniprot.org/uniprotkb/F1SKQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKQ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SKQ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQKILSLATEKTADRLQAFLQTLREDDLANLLQNQAVKGRAAGALLRAIFKGSPCSEEAGALRRLKIYSCCIRLLESGDLQKEVSSEIIGILMLEVHNFPGPSLVELANEFVGAIKEGNLTNGKSLELLPIILTALATEKAYGKGELSGEDYKKQLIKTLCSVRWDLQYVIQLTSMFKDVPLTAEEMEFVVEKVLSMFSKLNLQEIPPLVYQLLVLTSKGCRKRVLDGIIAFFSKLDKQHSEEESGDELLDLVTVPSGELRHVEGTVILHIVFAIKLDCELGRELLKHLKAGQQGDFSSNICPFSIALLLSVTRVQRFEEQVFDLLKSSVIKNFKDLQLLQGSKFLQNLVPHRCCVSTMILEVVKNSVHSWDHVTQGLVELGFILMDSYGPKKILDGKAIDTSSGLSRVSNQHACKLGANILLETFKIHEMIRQEILEQVLNRVITRASSPISRFLDLLSDIIVHSPLVLQSCSSKITETFDYLSFLPLQTVQGLLKAVQPLLKVSMSMRDSLILVLRKSMFASQLGARKSAVAGFLLLLKNFKVLGSLSSSQCSQSIGVSQVHVDVHSRYNSVANETFCLEIMDSLRRCLGQQADVRLMLYEGFYDVLRRNSQLANSVMQTLLSQLKQFYEPEPDVLPPLKFEACVLTQGDQISLQEPLDYLLCCIQHCLAWYKSRVMPLQQEEEEEEEGFYQDLDDMLESITSRMIKSELEDFELDKSADFSQSTSTGIKNNICASLVMGVCEVLIEYNFSISNFSKNKFEKILSLFMCYKKLADILNEKAGKGKTKVANKTNDSFLSMKFVSDLLTALFRDSAQSHEESLSVLRSSTEFMRYAVGVALHKVQQLKETGHVSGPDGHNPEKVFQNLCDITRVLLWRYTSIPTSVEELGKKEKGKSISLLCLEGLQKIFSVVLQFYQPQIHHFLRALDASDKEEEEVEVSITQRAAFQIRQFQRALLNILSSQEEDFNSKEAFLLVTVLSSLSKLLEPSSPQFVQMLSWTSKICKENSWEDASFCKGLMNLLFSLHVLCKSPVTLLRDLSQDIHGHLGDIDQDVEVEKTNHFAMVNLRTAAPTVCLVVLSQAEKVLEEVDWLITKLKGQVSQEITPEEASSQTTLPSHPIEKAIIIQLGTLLTFFHELVQTALPSGSCVETLLKDLCKMYTILTALVRYYLQVCQRSGGIPKNMEKLVKLSGSHLTPLCYSFISYMQNKKSKSLKHTGEKKEKAAAGASAVARVLRETKPIPNLIFAIEQYEKFLIHLSKRSKVNLMQHIKLSTSRDFKIKGNILDMVLREDEDENEEGTSSEHEGQNKEPAKKKRRKEMKCLS", 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"length": 1326, "header": "tr|A0A4X1U5C9-1|A0A4X1U5C9_PIG Isoform 1 of FA complementation group I OS=Sus scrofa OX=9823 GN=FANCI PE=4 SV=1 CANONICAL=A0A4X1U5C9-1" }, "locus": { "chromosome": "7", "start_pos": 54889316, "end_pos": 54814690, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002059.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002059.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002010.5", "url": "https://www.ensembl.org/id/ENSSSCP00000002010.5" } ] } }, { "isoform_ac": "F1SKQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5C9/entry#F1SKQ2-1", "sequence": { "sequence": "MDQKILSLATEKTADRLQAFLQTLREDDLANLLQNQAVKGRAAGALLRAIFKGSPCSEEAGALRRLKIYSCCIRLLESGDLQKEVSSEIIGILMLEVHNFPGPSLVELANEFVGAIKEGNLTNGKSLELLPIILTALATEKAYGKGELSGEDYKKQLIKTLCSVRWDLQYVIQLTSMFKDVPLTAEEMEFVVEKVLSMFSKLNLQEIPPLVYQLLVLTSKGCRKRVLDGIIAFFSKLDKQHSEEESGDE", "length": 249, "header": "tr|F1SKQ2-1|A0A4X1U5C9_PIG Computationally mapped isoform of FA 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"pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1U5K6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5K6" }, { "id": "PS50041", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50041" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C-type lectin", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 196, "start_aa": "Tyr", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": 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"MDFRTACEETKTGICLLQDGAQEPFKVRLHLAKDLLMIQEQDVICVSGEPFYSGERTVTIRRQAVGGFGLSIKGGAEHNIPVVISKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNFHPNNTDTLSCSSWPASPGLRWEKRWCDLRLIPLLHSRFSQYVPGTDLSRQNAFQVTAVDGVCSGIIQCLSAEDSLDWLQAIATNISNLTKHNIKKINRNFPVNQQIVYMGWCEAREQDALQDRVYLPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKDSDLLDRRKHCFTVQSESGEDLYFSVELDSDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGFICFDAATKELEFSNLFAVLHCIHSFFAAKVACLDPLFLGSQAAASAASSSSMSSKAKSLT", "length": 480, "header": "tr|A0A4X1U8R9-1|A0A4X1U8R9_PIG Isoform 1 of Gamma-1-syntrophin OS=Sus scrofa OX=9823 GN=SNTG1 PE=3 SV=1 CANONICAL=A0A4X1U8R9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1U5L5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8R9/entry#A0A4X1U5L5-1", "sequence": { "sequence": "MDFRTACEETKTGICLLQDGAQEPFKVRLHLAKDLLMIQEQDVICVSGEPFYSGERTVTIRRQAVGGFGLSIKGGAEHNIPVVISKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNFHPNNTDTLSCSSWPASPGLRWEKRWCDLRLIPLLHSRFSQYVPGTDLSRQNAFQVTAVDGVCSGIIQCLSAEDSLDWLQAIATNISNLTKHNIKKINRNFPVNQQIVYMGWCEAREQDALQDRVYLPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKDSDLLDRRKHCFTVQSESGEDLYFSVELDSDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGFICFDAATKAVLWRYKFSQLKGSSDDGKSKIKFLFQNPDTKQIEAKELEFSNLFAVLHCIHSFFAAKVACLDPLFLGSQAAASAASSSSMSSKAKSLT", "length": 517, "header": "tr|A0A4X1U5L5-1|A0A4X1U8R9_PIG Computationally mapped isoform of Gamma-1-syntrophin OS=Sus scrofa OX=9823 GN=SNTG1 PE=3 SV=1 CANONICAL=A0A4X1U8R9-1" }, "locus": { "chromosome": "4", "start_pos": 78684650, "end_pos": 78531263, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076410.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076410.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064365.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064365.1" } ] } }, { "isoform_ac": "A0A4X1U8R9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8R9/entry#A0A4X1U8R9-1", "sequence": { "sequence": "MDFRTACEETKTGICLLQDGAQEPFKVRLHLAKDLLMIQEQDVICVSGEPFYSGERTVTIRRQAVGGFGLSIKGGAEHNIPVVISKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNFHPNNTDTLSCSSWPASPGLRWEKRWCDLRLIPLLHSRFSQYVPGTDLSRQNAFQVTAVDGVCSGIIQCLSAEDSLDWLQAIATNISNLTKHNIKKINRNFPVNQQIVYMGWCEAREQDALQDRVYLPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKDSDLLDRRKHCFTVQSESGEDLYFSVELDSDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGFICFDAATKELEFSNLFAVLHCIHSFFAAKVACLDPLFLGSQAAASAASSSSMSSKAKSLT", "length": 480, "header": "tr|A0A4X1U8R9-1|A0A4X1U8R9_PIG Isoform 1 of Gamma-1-syntrophin OS=Sus scrofa OX=9823 GN=SNTG1 PE=3 SV=1 CANONICAL=A0A4X1U8R9-1" }, "locus": { "chromosome": "4", "start_pos": 78684650, "end_pos": 78531263, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076278.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076278.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061033.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061033.1" } ] } }, { "isoform_ac": "A0A4X1U8S4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8R9/entry#A0A4X1U8S4-1", "sequence": { "sequence": "MDFRTACEEERTVTIRRQAVGGFGLSIKGGAEHNIPVVISKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNFHPNNTDTLSCSSWPASPGLRWEKRWCDLRLIPLLHSRFSQYVPGTDLSRQNAFQVTAVDGVCSGIIQCLSAEDSLDWLQAIATNISNLTKHNIKKINRNFPVNQQIVYMGWCEAREQDALQDRVYLPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKDSDLLDRRKHCFTVQSESGEDLYFSVELDSDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGFICFDAATKAVLWRYKFSQLKGSSDDGKSKIKFLFQNPDTKQIEAKELEFSNLFAVLHCIHSFFAAKVACLDPLFLGSQAAASAASSSSMSSKAKSLT", "length": 472, "header": "tr|A0A4X1U8S4-1|A0A4X1U8S4_PIG Computationally mapped isoform of Gamma-1-syntrophin OS=Sus scrofa OX=9823 GN=SNTG1 PE=3 SV=1 CANONICAL=A0A4X1U8R9-1" }, "locus": { "chromosome": "4", "start_pos": 78684650, "end_pos": 78531263, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048327.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048327.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041960.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041960.2" } ] } }, { "isoform_ac": "A0A4X1U8V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8R9/entry#A0A4X1U8V9-1", "sequence": { "sequence": "MDFRTACEETKTGICLLQDGAQEPFKVRLHLAKDLLMIQEQDVICVSGEPFYSGERTVTIRRQAVGGFGLSIKGGAEHNIPVVISKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNFHPNNTDTLSCSSWPASPGLRWEKRWCDLRLIPLLHSRFSQYVPGTDLSRQNAFQVTAVDGVCSGIIQCLSAEDSLDWLQAIATNISNLTKHNIKKINRNFPVNQQIVYMGWCEAREQDALQDRVYLPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKDSDLLDRRKHCFTVQSESGEDLYFSVELDSDLAQWERAFQTATFLEVERIQHLYL", "length": 401, "header": "tr|A0A4X1U8V9-1|A0A4X1U8V9_PIG Computationally mapped isoform of Gamma-1-syntrophin OS=Sus scrofa OX=9823 GN=SNTG1 PE=3 SV=1 CANONICAL=A0A4X1U8R9-1" }, "locus": { "chromosome": "4", "start_pos": 78684650, "end_pos": 78559339, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088327.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088327.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062254.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062254.1" } ] } }, { "isoform_ac": "A0A4X1U8W5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8R9/entry#A0A4X1U8W5-1", "sequence": { "sequence": "MDFRTACEETKTGICLLQDGAQEPFKVRLHLAKDLLMIQEQDVICVSGEPFYSGERTVTIRRQAVGGFGLSIKGGAEHNIPVVISKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNFHPNNTDTLSCSSWPASPGLRWEKRWCDLRLIPLLHSRFSQYVPGTDLSRQNAFQVTAVDGVCSGIIQCLSAEDSLDWLQAIATNISNLTKHNDSDLLDRRKHCFTVQSESGEDLYFSVELDSDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGFICFDAATKAVLWRYKFSQLKGSSDDGKSKIKFLFQNPDTKQIEAKELEFSNLFAVLHCIHSFFAAKVACLDPLFLGSQAAASAASSSSMSSKAKSLT", "length": 441, "header": "tr|A0A4X1U8W5-1|A0A4X1U8W5_PIG Computationally mapped isoform of Syntrophin gamma 1 OS=Sus scrofa OX=9823 GN=SNTG1 PE=3 SV=1 CANONICAL=A0A4X1U8R9-1" }, "locus": { "chromosome": "4", "start_pos": 78684650, "end_pos": 78531263, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073656.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073656.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070225.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070225.1" } ] } }, { "isoform_ac": "A0A5G2QHZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8R9/entry#A0A5G2QHZ4-1", "sequence": { "sequence": "MDFRTACEETKTGICLLQDGAQEPFKVRLHLAKDLLMIQEQDVICVSGEPFYSGERTVTIRRQAVGGFGLSIKGGAEHNIPVVISKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVIKKINRNFPVNQQIVYMGWCEAREQDALQDRVYLPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKDSDLLDRRKHCFTVQSESGEDLYFSVELDSDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGFICFDAATKAVLWRYKFSQLKGSSDDGKSKIKFLFQNPDTKQIEAKELEFSNLFAVLHCIHSFFAAKVACLDPLFLGSQAAASAASSSSMSSKAKSLT", "length": 368, "header": "tr|A0A5G2QHZ4-1|A0A4X1U8R9_PIG Computationally mapped isoform of Gamma-1-syntrophin OS=Sus scrofa OX=9823 GN=SNTG1 PE=3 SV=1 CANONICAL=A0A4X1U8R9-1" }, "locus": { "chromosome": "4", "start_pos": 78684650, "end_pos": 78531263, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086808.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086808.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063516.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063516.1" } ] } }, { "isoform_ac": "A0A5G2QKN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8R9/entry#A0A5G2QKN8-1", "sequence": { "sequence": "MDFRTACEETKTGICLLQDGAQEPFKVRLHLAKDLLMIQEQDVICVSGEPFYSGERTVTIRRQAVGGFGLSIKGGAEHNIPVVISKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNFHPNNTDTLSCSSWPASPGLRWEKRWCDLRLIPLLHSRFSQYVPGTDLSRQNAFQVTAVDGVCSGIIQCLSAEDSLDWLQAIATNISNLTKHNIKKINRNFPVNQQIVYMGWCEAREQDALQDRVYLPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKAVLWRYKFSQLKGSSDDGKSKIKFLFQNPDTKQIEAKELEFSNLFAVLHCIHSFFAAKVACLDPLFLGSQAAASAASSSSMSSKAKSLT", "length": 435, "header": "tr|A0A5G2QKN8-1|A0A4X1U8R9_PIG Computationally mapped isoform of Gamma-1-syntrophin OS=Sus scrofa OX=9823 GN=SNTG1 PE=3 SV=2 CANONICAL=A0A4X1U8R9-1" }, "locus": { "chromosome": "4", "start_pos": 78684650, "end_pos": 78531263, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082225.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082225.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065399.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065399.2" } ] } }, { "isoform_ac": "A0A5G2QYY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8R9/entry#A0A5G2QYY6-1", "sequence": { "sequence": "MDFRTACEETKTGICLLQDGAQEPFKVRLHLAKDLLMIQEQDVICVSGEPFYSGGGAEHNIPVVISKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNFHPNNTDTLSCSSWPASPGLRWEKRWCDLRLIPLLHSRFSQYVPGTDLSRQNAFQVTAVDGVCSGIIQCLSAEDSLDWLQAIATNISNLTKHNIKKINRNFPVNQQIVYMGWCEAREQDALQDRVYLPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKDSDLLDRRKHCFTVQSESGEDLYFSVELDSDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGFICFDAATKVLCGQL", "length": 415, "header": "tr|A0A5G2QYY6-1|A0A4X1U8R9_PIG Computationally mapped isoform of Gamma-1-syntrophin OS=Sus scrofa OX=9823 GN=SNTG1 PE=3 SV=1 CANONICAL=A0A4X1U8R9-1" }, "locus": { "chromosome": "4", "start_pos": 78684650, "end_pos": 78558554, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070907.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070907.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069358.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069358.1" } ] } }, { "isoform_ac": "A0A5G2QZ44-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8R9/entry#A0A5G2QZ44-1", "sequence": { "sequence": "MDFRTACEEVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNFHPNNTDTLSCSSWPASPGLRWEKRWCDLRLIPLLHSRFSQYVPGTDLSRQNAFQVTAVDGVCSGIIQCLSAEDSLDWLQAIATNISNLTKHNIKKINRNFPVNQQIVYMGWCEAREQDALQDRVYLPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKDSDLLDRRKHCFTVQSESGEDLYFSVELDSDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGFICFDAATKVLCGQL", "length": 322, "header": "tr|A0A5G2QZ44-1|A0A4X1U8R9_PIG Computationally mapped isoform of Gamma-1-syntrophin OS=Sus scrofa OX=9823 GN=SNTG1 PE=3 SV=1 CANONICAL=A0A4X1U8R9-1" }, "locus": { "chromosome": "4", "start_pos": 78684650, "end_pos": 78558554, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086238.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086238.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070166.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070166.1" } ] } }, { "isoform_ac": "A0A5G2R709-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8R9/entry#A0A5G2R709-1", "sequence": { "sequence": "MDFRTACEETKTGICLLQDGAQEPFKVRLHLAKDLLMIQEQDVICVSGEPFYSGERTVTIRRQAVGGFGLSIKGGAEHNIPVVISKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNFHPNNTDTLSCSSWPASPGLRWEKRWCDLRLIPLLHSRFSQYVPGTDLSRQNAFQVTAVDGVCSGIIQCLSAEDSLDWLQAIATNISNLTKHNIKKINRNFPVNQQIVYMGWCEAREQDALQDRVYLPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKELEFSNLFAVLHCIHSFFAAKVACLDPLFLGSQAAASAASSSSMSSKAKSLT", "length": 398, "header": "tr|A0A5G2R709-1|A0A4X1U8R9_PIG Computationally mapped isoform of Gamma-1-syntrophin OS=Sus scrofa OX=9823 GN=SNTG1 PE=3 SV=1 CANONICAL=A0A4X1U8R9-1" }, "locus": { "chromosome": "4", "start_pos": 78684650, "end_pos": 78531263, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068992.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068992.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072865.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072865.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHZ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620960", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5NVQ9-1", "protein_name": "Gamma-1-syntrophin", "gene_name": "SNTG1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDFRTTCEETKTGICLLQDGNQEPFKVRLHLAKDILMIQEQDVICVSGEPFYSGERTVTIRRQTVGGFGLSIKGGAEHNIPVVISKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNYHPNNTDTLSCSSWPTSPGLRWEKRWCDLRLIPLLHSRFSQYLPGSDLCRQNAFQVIAVDGVCSGIIQCLSAEDCIDWLQAIASNISNLTKHNIKKINRNFPVNQQIVYMGWTEEREQDSLQDRMYTPKFLALRGSSLYKFMAPPVTTWDWTRAEKTFSVYEIMCKIFKDSDLLDRRKHCFGVQSESGEDLYFSVELESDLALWEKAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGFVCFDAATKAVLWRYKFSQLKGSSDDGKSKIKFLFQNPDNKQIEAKELEFSNLFAVLHCIHSFFAAKVACLDPLYVGSQATASAAPTTSGTGKLKYTT", "length": 517 }, "evidence": [ { "id": "A0A4X1U8R9", "url": "https://omabrowser.org/oma/group/A0A4X1U8R9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A1ZAH3-1", "protein_name": "Syntrophin-like 2, isoform E", "gene_name": "Syn2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MISGIMKLSDTMATPIEEKLDQNLKVRTGMVHVSDGKSRPEPLRLNLTMELLSLQKLEVVTPSSCHPNGPPMESKERMVQITRQKQGGLGLSIKGGAEHKLPILISRIYKDQAADITGQLFVGDAIIKVNGEYITACPHDDAVNILRNAGDIVVLTVKHYRAATPFLQKQLTKDTPDSDNDVTCAELKADEGYKSSVNSGTISRSCSRPMSICSEPEKRWTDVVAVPLMMAYVTRYIYGTDKLRQNAFEVRGLNGISTGVIHCDELAILSQWLKLITDNVVGLTHLQMKLYNRNFAVGERIEYMGWVNEGVINNNISWQSYKPRFLLLKGTEVMLFETPPLNVAGISKALVVYKVYQTMFRIVKESETVDSRQHCFLLQSSGHEPRYLSVETRQELLRIENSWNAAIVTSVIKLGRKTFAVSHHGKSGGLTLDWQAGFSLTEGAESATVWQYKFSQLRGSSDDGKSKLKLHFQDHDSRAIETKELECQVLQSLLFCMHAFLTAKVASVDPAFLSSIQQT", "length": 519 }, "evidence": [ { "id": "A0A4X1U8R9", "url": "https://omabrowser.org/oma/group/A0A4X1U8R9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "dystrophin-associated glycoprotein complex", "id": "GO:0016010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016010", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8R9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8R9" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8R9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8R9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8R9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8R9" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8R9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8R9" } ], "pmid": "" }, { "name": "ruffle membrane", "id": "GO:0032587", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032587", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8R9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8R9" } ], 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"https://www.rcsb.org/structure/pdb_00007nsh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsi", "url": "https://www.rcsb.org/structure/pdb_00007nsi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsj", "url": "https://www.rcsb.org/structure/pdb_00007nsj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GAW", "url": "https://www.rcsb.org/structure/6GAW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GB2", "url": "https://www.rcsb.org/structure/6GB2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDP", "url": "https://www.rcsb.org/structure/6YDP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDW", "url": "https://www.rcsb.org/structure/6YDW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQH", "url": "https://www.rcsb.org/structure/7NQH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQL", "url": 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"database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9837999", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9837999", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9937383", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020922113", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922113", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1U6S6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U6S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPAAASSLWGPCFGLRAAALRVARHQGPRLCGVRLMRCSSHRKGEALAGAPLDNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGFMPMGAVAPGAPPAAAAPEAAEEDLPKRKEQTHFTVRLTEAKPVDKVKLIKEIKSHIQGINLVQAKKLVESLPQEIKANVPKAEAEKIKAALEAVGGTVVLE", "length": 198, "header": "tr|A0A4X1U6S6-1|A0A4X1U6S6_PIG Isoform 1 of Large ribosomal subunit protein bL12m OS=Sus scrofa OX=9823 GN=MRPL12 PE=1 SV=1 CANONICAL=A0A4X1U6S6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1U6S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6/entry#A0A4X1U6S6-1", "sequence": { "sequence": "MLPAAASSLWGPCFGLRAAALRVARHQGPRLCGVRLMRCSSHRKGEALAGAPLDNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGFMPMGAVAPGAPPAAAAPEAAEEDLPKRKEQTHFTVRLTEAKPVDKVKLIKEIKSHIQGINLVQAKKLVESLPQEIKANVPKAEAEKIKAALEAVGGTVVLE", "length": 198, "header": "tr|A0A4X1U6S6-1|A0A4X1U6S6_PIG Isoform 1 of Large ribosomal subunit protein bL12m OS=Sus scrofa OX=9823 GN=MRPL12 PE=1 SV=1 CANONICAL=A0A4X1U6S6-1" }, "locus": { "chromosome": "12", "start_pos": 1203649, "end_pos": 1200744, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046171.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046171.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046596.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046596.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.", "journal": "Nature", "date": "2018", "authors": "Kummer Eva, Leibundgut Marc, Rackham Oliver, Lee Richard G, Boehringer Daniel, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6S6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6" } ], "reference": [ { "type": "PubMed", "id": "30089917", "url": "https://glygen.org/publication/PubMed/30089917" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6S6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.", "journal": "EMBO J.", "date": "2020", "authors": "Kummer E, Ban N", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6S6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6" } ], "reference": [ { "type": "PubMed", "id": "32602580", "url": "https://glygen.org/publication/PubMed/32602580" } ] }, { "title": "Structural basis of translation termination, rescue, and recycling in mammalian mitochondria.", "journal": "Mol. Cell", "date": "2021", "authors": "Kummer Eva, Schubert Katharina Noel, Schoenhut Tanja, Scaiola Alain, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6S6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6" } ], "reference": [ { "type": "PubMed", "id": "33878294", "url": "https://glygen.org/publication/PubMed/33878294" } ] } ], "pathway": [ { "id": "ssc:100624982", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624982", "resource": "KEGG Pathway" }, { "id": "R-SSC-5389840", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "resource": "Reactome", "description": "Mitochondrial translation elongation" }, { "id": "R-SSC-5419276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "resource": "Reactome", "description": "Mitochondrial translation termination" }, { "id": "R-SSC-9837999", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9837999", "resource": "Reactome", "description": "Mitochondrial protein degradation" }, { "id": "R-SSC-9937383", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "resource": "Reactome", "description": "Mitochondrial ribosome-associated quality control" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1ALS2-1", "protein_name": "Large ribosomal subunit protein bL12m", "gene_name": "MRPL12", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPAARLALPLPPRLARRPPLSWRWGAARPLGTGRARRRSEALAGEALAGAPLDTAAKEYSPKVRQLVRDIAGLTLLEVADLNALLKETLKIPDVGVMPAGAAAHLPAQAAPQEEEEAIPMKKEKTHFSVRLTELKATDKVKLIKEVKNFVPGINLVQAKKLVESLPQEIKANVSKEEAEKIKTALEAAGGTVVLE", "length": 196 }, "evidence": [ { "id": "A0A4X1U6S6", "url": "https://omabrowser.org/oma/group/A0A4X1U6S6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P36210-1", "protein_name": "Large ribosomal subunit protein bL12cz", "gene_name": "RPL12A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASTTLSIATTIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIAAVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGGAAAVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEEAGAKVSIA", "length": 191 }, "evidence": [ { "id": "A0A4X1U6S6", "url": "https://omabrowser.org/oma/group/A0A4X1U6S6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P52815-1", "protein_name": "Large ribosomal subunit protein bL12m", "gene_name": "MRPL12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLPAAARPLWGPCLGLRAAAFRLARRQVPCVCAVRHMRSSGHQRCEALAGAPLDNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAAQEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE", "length": 198 }, "evidence": [ { "id": "A0A4X1U6S6", "url": "https://omabrowser.org/oma/group/A0A4X1U6S6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P53163-1", "protein_name": "Large ribosomal subunit protein bL12m", "gene_name": "MNP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSLRILAKRSSSIWMKTRVTPALISPITITTRFNSTTTTAPSHKDDVRPVDPKISKIVQDISQLTLLETSSLINELKTVLNIPEISMPMGGFMAGAAGAGAGNVPSSTGEAGSGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLLGLSLVEAKKFVEAAPKVLKENVAKDDAEKIKKTLEDLGAKVSLE", "length": 194 }, "evidence": [ { "id": "A0A4X1U6S6", "url": "https://omabrowser.org/oma/group/A0A4X1U6S6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q7YR75-1", "protein_name": "Large ribosomal subunit protein bL12m", "gene_name": "MRPL12", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLPSATSLLRGPCLGLRAAALRLVRQQVPHVCAVRLMRCSSHRRGEALTGAPLDNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE", "length": 198 }, "evidence": [ { "id": "A0A4X1U6S6", "url": "https://omabrowser.org/oma/group/A0A4X1U6S6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q86KA1-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISRVSLNKCFSTLSKLKCNNNTLYSTRLFTTEPEKVNLKLTTIENGKSSTEVADLVERISKLSILDVMDLTQHLQKKLSIPDIDLSSLGSGAPAGGAAPAAAAAPAAVAKTDFQVRLVKVPDGAKYKIIKELREVKPSLSLMETKGLVEKIPSVIADKVSKEEAEKIIAKLKASGAELEMA", "length": 182 }, "evidence": [ { "id": "A0A4X1U6S6", "url": "https://omabrowser.org/oma/group/A0A4X1U6S6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9DB15-1", "protein_name": "Large ribosomal subunit protein bL12m", "gene_name": "Mrpl12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVAASRCLWGPRLGLRGAALRLARQQMPSVCAARQLRSSSHRRSEALAGAPLDNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGPVSAAAPASEAAEEEDVPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE", "length": 201 }, "evidence": [ { "id": "A0A4X1U6S6", "url": "https://omabrowser.org/oma/group/A0A4X1U6S6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VSR5-1", "protein_name": "Mitochondrial ribosomal protein L12", "gene_name": "mRpL12", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MHITRLALRQISRQVQLHRMYSAAAPAAAVSGAEKLVPPAPEGAAKPPNPKLDSIVNNIAALNLLEVAELSTLLKQKLNLPETAFAPQFAAGPARAAPAEDEEEAAPKKVQTSFKVKLVKFDEKQKVALIKEVKNLLEGMNLVQAKKFVESAPTIVKEDIPKEEAEKLKEALSKAGAIIEIE", "length": 182 }, "evidence": [ { "id": "A0A4X1U6S6", "url": "https://omabrowser.org/oma/group/A0A4X1U6S6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "X1WHQ5-1", "protein_name": "Large ribosomal subunit protein bL12m", "gene_name": "mrpl12", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMYCSRHCVRLALRAAVNTHRHSVQRTALYAQRTLKTSSVSAVDAIATPHLDGTPKEYSPKIQQLVNDIASLTLIEVSDLNELLKKTLNIQDVGMMSMGSMAAVPVAPPAELTEGLAEEEVAPAKKEKTHFTIKLTEFKAADKVKLIKEVKNCMEGINLVQAKKLVESLPQEIRTNISKDEAEKLKSALEAAGGTVVLE", "length": 199 }, "evidence": [ { "id": "A0A4X1U6S6", "url": "https://omabrowser.org/oma/group/A0A4X1U6S6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial large ribosomal subunit", "id": "GO:0005762", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005762", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6S6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6S6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6S6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6S6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6S6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6" } ], "pmid": "" }, { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6S6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6" } ], "pmid": "" }, { "name": "mitochondrial transcription", "id": "GO:0006390", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006390", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U6S6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1U6S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6" }, { "id": "PF00542", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00542" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Large ribosomal subunit protein bL12 C-terminal", "eco_id": "ECO_0000259", "start_pos": 130, "end_pos": 197, "start_aa": "Phe", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1U6S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U6S6" }, { "id": "PF16320", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16320" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Large ribosomal subunit protein bL12 oligomerization", "eco_id": "ECO_0000259", "start_pos": 63, "end_pos": 112, "start_aa": "Lys", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1U7C6-1", "uniprot_ac": "A0A4X1U7C6", "uniprot_id": "A0A4X1U7C6_PIG", "mass": { "chemical_mass": 48785.0, "monoisotopic_mass": 48785.0 }, "refseq": { "ac": "XP_020918265", "name": "coiled-coil domain-containing protein 83", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918265" }, "gene_names": [ { "name": "CCDC83", "type": "recommended", "evidence": [ { "id": "A0A4X1U7C6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7C6" } ] }, { "name": "CCDC83", "type": "synonym", "evidence": [ { "id": "XP_020918265", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918265" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 83", "type": "synonym", "evidence": [ { "id": "A0A4X1U7C6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7C6/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 83", "type": "synonym", "evidence": [ { "id": "XP_020918265", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918265" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U7C6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7C6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC83", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7C6", "locus": { "chromosome": "9", "start_pos": 19816227, "end_pos": 19773162, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014912", "url": "https://www.ensembl.org/id/ENSSSCG00000014912" } ] } } ], "crossref": [ { "id": "A0A4X1U7C6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1U7C6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100739601", "url": "https://www.ncbi.nlm.nih.gov/gene/100739601", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026702", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026702", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100739601", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739601", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DMRIQIS", "url": "https://omabrowser.org/oma/group/DMRIQIS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1U7C6", "url": "https://www.orthodb.org/?gene=A0A4X1U7C6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21468", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21468", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21468:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21468:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_020918265", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918265", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1U7C6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7C6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U7C6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7C6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENTAKANKKDIQDGPPKEVKLPTSEALLDYHCQIKENAVERFMVQIKKLREKNQKYQERNKRLKDEQTWHIRNLLKELSEDKSEGSTVVTREEVERAMKEKWKFERDQEQNLKDMHIQINNAEKLFLEKLSEKEYWEQYKNVGSEQQAKLIIALQNDINRVKENAEKMSEQYDINLEDVRKRIIRETLLQLDQKKEWATENALRFIDKGSYREIWENDWLKKEIATHRKEVEELEHAIHELEGENLVLIDQLFNCRLVDLKIPRRLYLTQAVGQEVPPEEMPLELPETSIEKSQLQPVEVKSRDLISLSLGSSSLPLGHEDSSRYSEQLKTDEEESSSIAFGASDIKYLLYEDEQDFKDYVNLGPLEVKLMTVESKKKPIHFQEKEIPVKFYEDVRSPESHITYKMMKSFL", "length": 412, "header": "tr|A0A4X1U7C6-1|A0A4X1U7C6_PIG Isoform 1 of Coiled-coil domain containing 83 OS=Sus scrofa OX=9823 GN=CCDC83 PE=4 SV=1 CANONICAL=A0A4X1U7C6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1U7C6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7C6/entry#A0A4X1U7C6-1", "sequence": { "sequence": "MENTAKANKKDIQDGPPKEVKLPTSEALLDYHCQIKENAVERFMVQIKKLREKNQKYQERNKRLKDEQTWHIRNLLKELSEDKSEGSTVVTREEVERAMKEKWKFERDQEQNLKDMHIQINNAEKLFLEKLSEKEYWEQYKNVGSEQQAKLIIALQNDINRVKENAEKMSEQYDINLEDVRKRIIRETLLQLDQKKEWATENALRFIDKGSYREIWENDWLKKEIATHRKEVEELEHAIHELEGENLVLIDQLFNCRLVDLKIPRRLYLTQAVGQEVPPEEMPLELPETSIEKSQLQPVEVKSRDLISLSLGSSSLPLGHEDSSRYSEQLKTDEEESSSIAFGASDIKYLLYEDEQDFKDYVNLGPLEVKLMTVESKKKPIHFQEKEIPVKFYEDVRSPESHITYKMMKSFL", "length": 412, "header": "tr|A0A4X1U7C6-1|A0A4X1U7C6_PIG Isoform 1 of Coiled-coil domain containing 83 OS=Sus scrofa OX=9823 GN=CCDC83 PE=4 SV=1 CANONICAL=A0A4X1U7C6-1" }, "locus": { "chromosome": "9", "start_pos": 19816021, "end_pos": 19775613, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016268.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016268.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015833.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015833.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U7C6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7C6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100739601", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739601", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LMB0-1", "protein_name": "Coiled-coil domain containing 83", "gene_name": "Ccdc83", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSAKGSKKDAPDGPPKDSKMPVSEALLDYHREIKENAVERFTFHIRKLRDKNQKYLERNRRLKEEQNWHLKNLIKELKDEKLDVVQPITREDVEEAMKEKWKFERDQEAHLKEMRVQISEAEKLFLEKLSEKEYWEEYKNVGSAQHAELILSLQNDIDTVKENAEKMSEQYKVTLEDTRKKIIRETLILLEQRKEWATQNAVRFIDKNNYREIWENDWLKKEIKIHRKEVEELETCIHQLEEENLLLIEQLFNCRLVDLKIPRKLYITQAAGLQVTPEDESLNLPDANTAPEENLQLPSKEESDDRLDLLLGSSYGISSPDSQPKKTGSKEGSCTEIEDPIVKYLVQEDEQDFKEYVNLGPLALKLMSVQGKKMPIHFQEKEMPIEFYEDMRNPESHITHKMMKTFL", "length": 409 }, "evidence": [ { "id": "A0A4X1U7C6", "url": "https://omabrowser.org/oma/group/A0A4X1U7C6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2TA00-1", "protein_name": "Coiled-coil domain-containing protein 83", "gene_name": "CCDC83", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "METAAKTNKRDIQDGPPKEVKLPISEALLDYHCQIKENALEQFMARIKKLREKNQKYHERNKRLKDEQIWHIRNLLKELSEEKSEGSVVVTREEVENAMKEKWKFERDQEQNLKDMRIQISNAEKLFLEKLSEKEYWEEYKNVGSEQHGKLITSLQNDINRVKENAEKMSEQYKITLEDARKRIIRETLLQLDQKKEWATENALRFIDKGSYREIWENDWLKKEIANHRKEVEELENAIHELEEENLVLIDQLFNCRLVDLKIPRRLYLTQAVGQEVPPEVPLELSETHKVIPEKSDSQPVDIKSRDVSSISFGSSGFRLSHKDSRFGQLLKIDEEASSSIEFGASDMKYLLYEDEQDFKDYVNLGPLEVKLMTVESKKMPIHFQEKETPVKFYEDVRSPESHITYKMMKSFL", "length": 413 }, "evidence": [ { "id": "A0A4X1U7C6", "url": "https://omabrowser.org/oma/group/A0A4X1U7C6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8IWF9-1", "protein_name": "Coiled-coil domain-containing protein 83", "gene_name": "CCDC83", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MENSGKANKKDTHDGPPKEIKLPTSEALLDYQCQIKEDAVEQFMFQIKTLRKKNQKYHERNSRLKEEQIWHIRHLLKELSEEKAEGLPVVTREDVEEAMKEKWKFERDQEKNLRDMRMQISNAEKLFLEKLSEKEYWEEYKNVGSERHAKLITSLQNDINTVKENAEKMSEHYKITLEDTRKKIIKETLLQLDQKKEWATQNAVKLIDKGSYLEIWENDWLKKEVAIHRKEVEELKNAIHELEAENLVLIDQLSNCRLVDLKIPRRLYLTQAAGLEVPPEEMSLELPETHIEEKSELQPTEVESRDLMSSSDESTILHLSHENSIEDLQYVKIDKEENSGTEFGDTDMKYLLYEDEKDFKDYVNLGPLGVKLMSVESKKMPIHFQEKEIPVKLYKDVRSPESHITYKMMKSFL", "length": 413 }, "evidence": [ { "id": "A0A4X1U7C6", "url": "https://omabrowser.org/oma/group/A0A4X1U7C6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D4V3-1", "protein_name": "Coiled-coil domain-containing protein 83", "gene_name": "Ccdc83", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSAKGSKKDAPDGPPKDSKLPVSEALLDYHREIKENAVERFMFHIKKLREKNQKYQERNRRLKEEQNWHIKNLIKELKEKNLDEAPIVTREEVEEAMKEKWEFERQQEASLKEMRIQINEAEKLFLEKLSEKEYWEEYKNVGSAQHAQLIVSLQNDIDTVKENAEKMSEQYKVTLEDEKKRISRETMIQLKQRKEWATQHAVRFIDKNNYREIWENDWLKKEGDTASFGNVLSLLDFLPPDLHTAEPCVSSGQSRGSLRILAPFALQLWSKLSGLLPTLVTPDPVCIIWSFGPGQTNSMAICP", "length": 305 }, "evidence": [ { "id": "A0A4X1U7C6", "url": "https://omabrowser.org/oma/group/A0A4X1U7C6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1U7Q6-1", "uniprot_ac": "A0A4X1U7Q6", "uniprot_id": "A0A4X1U7Q6_PIG", "mass": { "chemical_mass": 68946.0, "monoisotopic_mass": 68946.0 }, "refseq": { "ac": "XP_020922655", "name": "kelch-like protein 10", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922655" }, "gene_names": [ { "name": "KLHL10", "type": "recommended", "evidence": [ { "id": "A0A4X1U7Q6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7Q6" } ] }, { "name": "KLHL10", "type": "synonym", "evidence": [ { "id": "XP_020922655", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922655" } ] } ], "protein_names": [ { "name": "Kelch-like protein 10", "type": "recommended", "evidence": [ { "id": "A0A4X1U7Q6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7Q6/entry#names_and_taxonomy" } ] }, { "name": "kelch-like protein 10", "type": "synonym", "evidence": [ { "id": "XP_020922655", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922655" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U7Q6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7Q6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KLHL10", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7Q6", "locus": { "chromosome": "12", "start_pos": 20854407, "end_pos": 20861662, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033629", "url": "https://www.ensembl.org/id/ENSSSCG00000033629" } ] } } ], "crossref": [ { "id": "A0A4X1U7Q6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1U7Q6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd18240", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18240", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18450", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18450", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110256005", "url": "https://www.ncbi.nlm.nih.gov/gene/110256005", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110256005", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256005", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YKTNQWS", "url": "https://omabrowser.org/oma/group/YKTNQWS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1U7Q6", "url": "https://www.orthodb.org/?gene=A0A4X1U7Q6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020922655", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922655", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1U7Q6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7Q6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U7Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7Q6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEMESAAASTRFHQPHMERKMSAMTCEIFNELRLEGKLCDVVIKVNGFEFNAHKNILCSCSSYFRALFTSGWNNTEKKVYNIPGISPDMMKLIIEYAYTRTVPITPDNVEKLLAAADQFNIMGIVRGCCEFLKSELCLDNCIGICKFTDYYYCPELRQKAYMFILHNFEEMVKVSAEFLELSVTELKDIIEKDELNVKQEDAVFEAILKWISHDPQNRKQHISVLLPKVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALKAMYDLNMNGPSNSDFTNPLTRPRLPYAILFAIGGWSGGSPTNAIEAYDARADRWVNVTCEEESPRAYHGAAYLKGYVYIIGGFDSVDYFNSVKRFDPVKKTWHQVAPMHSRRCYVSVTVLSNFIYAMGGFDGYVRLNTAERYEPETNQWTLIAPMHEQRSDASATTLYGKVYICGGFNGNECLFTAEVYNTESNQWTVIAPMRSRRSGIGVIAYGEHVYAVGGFDGANRLRSAEAYSPVANTWRTIPTMFNPRSNFGIEVVDDLLFVVGGFNGFTTTFNVECYDEKTDEWYDAHDMSIYRSALSCCVVPGLANVGEYAARRDNFTGLALRDEVKYSASTSTLPV", "length": 608, "header": "tr|A0A4X1U7Q6-1|A0A4X1U7Q6_PIG Isoform 1 of Kelch-like protein 10 OS=Sus scrofa OX=9823 GN=KLHL10 PE=4 SV=1 CANONICAL=A0A4X1U7Q6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1U7Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7Q6/entry#A0A4X1U7Q6-1", "sequence": { "sequence": "MEMESAAASTRFHQPHMERKMSAMTCEIFNELRLEGKLCDVVIKVNGFEFNAHKNILCSCSSYFRALFTSGWNNTEKKVYNIPGISPDMMKLIIEYAYTRTVPITPDNVEKLLAAADQFNIMGIVRGCCEFLKSELCLDNCIGICKFTDYYYCPELRQKAYMFILHNFEEMVKVSAEFLELSVTELKDIIEKDELNVKQEDAVFEAILKWISHDPQNRKQHISVLLPKVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALKAMYDLNMNGPSNSDFTNPLTRPRLPYAILFAIGGWSGGSPTNAIEAYDARADRWVNVTCEEESPRAYHGAAYLKGYVYIIGGFDSVDYFNSVKRFDPVKKTWHQVAPMHSRRCYVSVTVLSNFIYAMGGFDGYVRLNTAERYEPETNQWTLIAPMHEQRSDASATTLYGKVYICGGFNGNECLFTAEVYNTESNQWTVIAPMRSRRSGIGVIAYGEHVYAVGGFDGANRLRSAEAYSPVANTWRTIPTMFNPRSNFGIEVVDDLLFVVGGFNGFTTTFNVECYDEKTDEWYDAHDMSIYRSALSCCVVPGLANVGEYAARRDNFTGLALRDEVKYSASTSTLPV", "length": 608, "header": "tr|A0A4X1U7Q6-1|A0A4X1U7Q6_PIG Isoform 1 of Kelch-like protein 10 OS=Sus scrofa OX=9823 GN=KLHL10 PE=4 SV=1 CANONICAL=A0A4X1U7Q6-1" }, "locus": { "chromosome": "12", "start_pos": 20861461, "end_pos": 20854554, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050618.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050618.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054606.1", "url": "https://www.ensembl.org/id/ENSSSCP00000054606.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U7Q6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U7Q6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110256005", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256005", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MBZ1-1", "protein_name": "Kelch-like protein 10", "gene_name": "KLHL10", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEMESAAASTRFHQPHMERKMSAMTCEIFNELRLEGKLCDVVIKVNGFEFNAHKNILCSCSSYFRALFTSGWNNTEKKVYNIPGISPDMMKLIIEYAYTRTVPITPDNVEKLLAAADQFNIMGIVRGCCEFLKSELCLDNCIGICKFTDYYYCPELRQKAYMFILHNFEEMVKVSAEFLELSVTELKDIIEKDELNVKQEDAVFEAILKWISHDPQNRKQHISVLLPKVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALKAMYDLNMNGPSNSDFTNPLTRPRLPYAILFAIGGWSGGSPTNAIEAYDARADRWVNVTCEEESPRAYHGAAYLKGYVYIIGGFDSVDYFNSVKRFDPVKKTWHQVAPMHSRRCYVSVTVLSNFIYAMGGFDGYVRLNTAERYEPETNQWTLIAPMHEQRSDASATTLYGKVYICGGFNGNECLFTAEVYNAESNQWTVIAPMRSRRSGIGVIAYGEHVYAVGGFDGANRLRSAEAYSPVANTWRTIPTMFNPRSNFGIEVVDDLLFVVGGFNGFTTTFNVECYDEKTDEWYDAHDMSIYRSALSCCVVPGLANVGEYAARRDNFTGLALRDEVKYSASTSTLPV", "length": 608 }, "evidence": [ { "id": "A0A4X1U7Q6", "url": "https://omabrowser.org/oma/group/A0A4X1U7Q6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1NTA7-1", "protein_name": "Kelch like family member 10", "gene_name": "KLHL10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDGSAAHSGCSASLMERKMSAMACEVFNELRLEGKLCDVIIDVNGCQFNAHKNILCSCSHYFRALFTSGWNNMEKVVYKIPGISPEMMKLVIEYAYTRTVSITADNVESLLGTADQFNIMGIIRLCCEFLKSQLCLENCIGICRLTNYYHCPGLRQTAYMFILHNFEELIKVSTEFLDLSIHELTDIIEKDELNVKQEEVVFDAILKWITHDPWHRKQHIPILLSKVRLALMEADHFMNKVKTHDYVKDNNECKPIIINTLTAMYNLNTNNPVLSDRINPLARPRLPYSILFAIGGWSGGSPTNAIETYDTRADKWVNVTCHEESPRAYHGTAFLKGFVYVIGGFDSVDYFNSVKRFDPVKKTWHQVAPMHSRRCYVSVTVLNDFIYAMGGFDGYTRLNTAERYEPQTNQWTLIAPMHEQRSDAGATTLHDKVYICGGFNGNECLSTAEVYDAGTDQWTFISPMRSRRSGVGVIAYGNQVYAVGGFDGVNRLRTVEAYNPAANTWRVVPTMFNPRSNFGIEVVDDLLFVVGGFNGYATTFNVECYDEKADEWFDAQDMSVYRSALSCCVVPGLCNVGDYAAKRD", "length": 584 }, "evidence": [ { "id": "A0A4X1U7Q6", "url": "https://omabrowser.org/oma/group/A0A4X1U7Q6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6JEL2-1", "protein_name": "Kelch-like protein 10", "gene_name": "KLHL10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEMESAAASTRFHQPHMERKMSAMACEIFNELRLEGKLCDVVIKVNGFEFSAHKNILCSCSSYFRALFTSGWNNTEKKVYNIPGISPDMMKLIIEYAYTRTVPITPDNVEKLLAAADQFNIMGIVRGCCEFLKSELCLDNCIGICKFTDYYYCPELRQKAYMFILHNFEEMVKVSAEFLELSVTELKDIIEKDELNVKQEDAVFEAILKWISHDPQNRKQHISILLPKVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALKAMYDLNMNGPSNSDFTNPLTRPRLPYAILFAIGGWSGGSPTNAIEAYDARADRWVNVTCEEESPRAYHGAAYLKGYVYIIGGFDSVDYFNSVKRFDPVKKTWHQVAPMHSRRCYVSVTVLGNFIYAMGGFDGYVRLNTAERYEPETNQWTLIAPMHEQRSDASATTLYGKVYICGGFNGNECLFTAEVYNTESNQWTVIAPMRSRRSGIGVIAYGEHVYAVGGFDGANRLRSAEAYSPVANTWRTIPTMFNPRSNFGIEVVDDLLFVVGGFNGFTTTFNVECYDEKTDEWYDAHDMSIYRSALSCCVVPGLANVEEYAARRDNFPGLALRDEVKYSASTSTLPV", "length": 608 }, "evidence": [ { "id": "A0A4X1U7Q6", "url": "https://omabrowser.org/oma/group/A0A4X1U7Q6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6JEL3-1", "protein_name": "Kelch-like protein 10", "gene_name": "Klhl10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"MAPFGLLVTGASFAAFRGLHWGLQLLPTPGSAAQDRWKWRNICVSLVHSLLTGAGALLGLSLYPQMAADPIHGHPPWALVLVAVSVGYFLADGADMLWNQTLGQAWELLCHHLVVVSCLSTAILSGHYVGFSVVSLLLELNSTCLHLRKLLLLSRQAPSLAFSLTSWATLATLALFRLVPLGWMSLWLIRQHHQVPLALVILGGTGLVTVGAMSITLGVRILVSDVLRSRPRPSIPGQKETRGSRTCCDGELVTRGGSTRSLKD", "length": 264, "header": "tr|A0A4X1U8I3-1|A0A4X1U8I3_PIG Isoform 1 of TLC domain containing 2 OS=Sus scrofa OX=9823 GN=TLCD2 PE=4 SV=1 CANONICAL=A0A4X1U8I3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1U8I3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8I3/entry#A0A4X1U8I3-1", "sequence": { "sequence": "MAPFGLLVTGASFAAFRGLHWGLQLLPTPGSAAQDRWKWRNICVSLVHSLLTGAGALLGLSLYPQMAADPIHGHPPWALVLVAVSVGYFLADGADMLWNQTLGQAWELLCHHLVVVSCLSTAILSGHYVGFSVVSLLLELNSTCLHLRKLLLLSRQAPSLAFSLTSWATLATLALFRLVPLGWMSLWLIRQHHQVPLALVILGGTGLVTVGAMSITLGVRILVSDVLRSRPRPSIPGQKETRGSRTCCDGELVTRGGSTRSLKD", "length": 264, "header": "tr|A0A4X1U8I3-1|A0A4X1U8I3_PIG Isoform 1 of TLC domain containing 2 OS=Sus scrofa OX=9823 GN=TLCD2 PE=4 SV=1 CANONICAL=A0A4X1U8I3-1" }, "locus": { "chromosome": "12", "start_pos": 47909216, "end_pos": 47907454, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042140.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042140.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053116.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053116.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 28, "start_aa": "Thr", "end_pos": 28, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr28", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8I3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8I3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110256072", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256072", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A6NGC4-1", "protein_name": "TLC domain-containing protein 2", "gene_name": "TLCD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPTGLLVAGASFLAFRGLHWGLRRLPTPESAARDRWQWWNLCVSLAHSLLSGTGALLGLSLYPQMAADPIHGHPRWALVLVAVSVGYFLADGADLLWNQTLGKTWDLLCHHLVVVSCLSTAVLSGHYVGFSMVSLLLELNSACLHLRKLLLLSRQAPSLAFSVTSWASLATLALFRLVPLGWMSLWLFRQHHQVPLALVTLGGIGLVTVGIMSIILGIRILVNDVLQSRPHPPSPGHEKTRGTRTRRDNGPVTSNSSTLSLKD", "length": 264 }, "evidence": [ { "id": "A0A4X1U8I3", "url": "https://omabrowser.org/oma/group/A0A4X1U8I3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A8WGS4-1", "protein_name": "TLC domain-containing protein 2", "gene_name": "tlcd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MELNSVILTTGSSVGFFKLVNYGLGKLPIPETARRNAWKWNNISTSFVHSLITGVWSVLCFCMHPQMAEDLIETHSVFSHALVSVSIGYFIYDFLDMVINQKIIHSWELLFHHVVVITCFGISVLTCRYVGFAVVALLVEINSVFLHLRQVLRMANLAKSTFYRVNSMINLGTYVVFRINTLAWMTRWLVLNRDLIPLFSYTIGSVGLAIMTAMNIVLFYRLMRSDFMKASREKELRKEKEKEKDM", "length": 246 }, "evidence": [ { "id": "A0A4X1U8I3", "url": "https://omabrowser.org/oma/group/A0A4X1U8I3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E1BNN2-1", "protein_name": "TLC domain containing 2", "gene_name": "TLCD2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRRGLEPGSPRDRSGRSPPARPWRPPGSSSLAPPLPPSGGCTGGCSCCPPRDLPPRTAGSGGTFVSPWCTACLRGPGPCSGARLKRLSLYPQMAADPIHGHPPWALLLVAFSVGYFLADGTDLLWNQTLGQAWDLVCHHALVVSCLSTAVLSGHYVGFSVVSLLLELNSIFLHLRQLLLLSRQAPSLAFSVTSWAALATLVLFRLVPLGWMSLWLFQQCHQIPLALVILGGTGLAFVGVMSISLGVHILVSDVLRSRPCPPILGNKEARGTRTDCDGEAITRDDSTLSLKD", "length": 291 }, "evidence": [ { "id": "A0A4X1U8I3", "url": "https://omabrowser.org/oma/group/A0A4X1U8I3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8I3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8I3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "plasma membrane organization", "id": "GO:0007009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007009", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8I3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8I3" } ], "pmid": "" }, { "name": "phospholipid homeostasis", "id": "GO:0055091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055091", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8I3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8I3" } ], "pmid": "" }, { "name": "membrane assembly", "id": "GO:0071709", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071709", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8I3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8I3" } ], "pmid": "" }, { "name": "regulation of membrane lipid distribution", "id": "GO:0097035", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097035", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U8I3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U8I3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1U8I3", "database": "UniProtKB", "url": 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"glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCNIP1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U926", "locus": { "chromosome": "16", "start_pos": 53267523, "end_pos": 53653730, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017003", "url": "https://www.ensembl.org/id/ENSSSCG00000017003" } ] } } ], "crossref": [ { "id": "A0A4X1U926", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1U926", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017003", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017003", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "595102", "url": "https://www.ncbi.nlm.nih.gov/gene/595102", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1U926", "url": "https://www.orthodb.org/?gene=A0A4X1U926", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23055", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23055", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23055:SF82", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23055:SF82", "database": 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003130773", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130773", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1U9X2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U9X2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U9X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U9X2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVSGKLIKLLVFELLEFVAFCVPTLVIMEQFAAAFQNTRQTPERTHYWLIVSCSIAYVALVTLLIWIPVKVLLFKKRHLYHKIKGWRPVMMMCVVLTTLPSFSFSIAVTEVQKNSNGSAMLPDMLPDLPVSLVLTSLIIVDIIEKLRIYPLRGRQRSNEDRHIQTTTLQQVKTVTDQVRQNEENQIPPQPAKRTKLSRPPGGVTQSPAPELEGPQEPTFEWGVLSTVSRRDVRAEIFLWSFLLWADTIEMVRVAGHPNVYKSGWVYPVYLFSFLSLLRIVLTPQNPLHGSLGILLQDLPFIFIRLSLIIVLGTITPILGLCKNVLVTVSYVYFNYLTRFRIFSGLETSF", "length": 349, "header": "tr|A0A4X1U9X2-1|A0A4X1U9X2_PIG Isoform 1 of Transmembrane protein 236 OS=Sus scrofa OX=9823 GN=TMEM236 PE=1 SV=1 CANONICAL=A0A4X1U9X2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1U9X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U9X2/entry#A0A4X1U9X2-1", "sequence": { "sequence": "MVSGKLIKLLVFELLEFVAFCVPTLVIMEQFAAAFQNTRQTPERTHYWLIVSCSIAYVALVTLLIWIPVKVLLFKKRHLYHKIKGWRPVMMMCVVLTTLPSFSFSIAVTEVQKNSNGSAMLPDMLPDLPVSLVLTSLIIVDIIEKLRIYPLRGRQRSNEDRHIQTTTLQQVKTVTDQVRQNEENQIPPQPAKRTKLSRPPGGVTQSPAPELEGPQEPTFEWGVLSTVSRRDVRAEIFLWSFLLWADTIEMVRVAGHPNVYKSGWVYPVYLFSFLSLLRIVLTPQNPLHGSLGILLQDLPFIFIRLSLIIVLGTITPILGLCKNVLVTVSYVYFNYLTRFRIFSGLETSF", "length": 349, "header": "tr|A0A4X1U9X2-1|A0A4X1U9X2_PIG Isoform 1 of Transmembrane protein 236 OS=Sus scrofa OX=9823 GN=TMEM236 PE=1 SV=1 CANONICAL=A0A4X1U9X2-1" }, "locus": { "chromosome": "10", "start_pos": 44093988, "end_pos": 44055271, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012080.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012080.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011772.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011772.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U9X2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U9X2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523460", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523460", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MER5-1", "protein_name": "Transmembrane protein 236", "gene_name": "TMEM236", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASRKLIKLLVFELLEFTAFCVPTLVIMEQFAVAYSTTRHPPDKTRYWLIVSCSIAYVASVSLLIWVPVKVLLYKKRHLYQKIKGWRPVLMMCIVLTTLPSFSFSIAVTEVQKNINGSTDVLPDMLPDLPVSLVLTCLIVVDIIEKLRIYPLRGRQKSNEDRHIHTTNLQQIRTVTCEAKQNEENPTRPQPANRTHLSRPLGGATGNSSPELEGPQDPTFEWGILRTLSQQDVRAEIFLGSFPLWADTIEMVRVAGHPRVYKSGWVYVVYIFSYISLLRMIFTPRNPLLNSFAILLQDLPFIFVRLSLIIGLGTITPVLGLFKNVLVTLSYVYFNFLTRFRMFSTFERSF", "length": 350 }, "evidence": [ { "id": "A0A4X1U9X2", "url": "https://omabrowser.org/oma/group/A0A4X1U9X2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A2ARJ3-1", "protein_name": 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"categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13817", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13817", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13817:SF151", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13817:SF151", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1UAF0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UAF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAF0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "GAIPLEHVEAAIGEPVTLQCKVDGTPEIRISWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGVLLKDDANLQTSFVHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLILSEHEVPPFFDLKPVSVDLALGESGSFKCHITGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVGKGDAGQYTCYASNAAGKDSCSAHLGVQEPPRFIKKLEPSRIVKQDEYTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFLDSVAVLEMHNLSVEDSGDYTCEARNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKVMSENFLTSIHILNVDAADIGEYQCKATNDVGSDTCVGSITLKAPPIFVKKPSDISTIIGEEVQLQATVEGAEPISVVWFKDKGEIVRESDNIWISYSENIATLQFSRAEMANAGKYTCQIRNDAGMQECFATVSILG", "length": 563, "header": "tr|A0A4X1UAF0-1|A0A4X1UAF0_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1UAF0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UAF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAF0/entry#A0A4X1UAF0-1", "sequence": { "sequence": "GAIPLEHVEAAIGEPVTLQCKVDGTPEIRISWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGVLLKDDANLQTSFVHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLILSEHEVPPFFDLKPVSVDLALGESGSFKCHITGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVGKGDAGQYTCYASNAAGKDSCSAHLGVQEPPRFIKKLEPSRIVKQDEYTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFLDSVAVLEMHNLSVEDSGDYTCEARNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKVMSENFLTSIHILNVDAADIGEYQCKATNDVGSDTCVGSITLKAPPIFVKKPSDISTIIGEEVQLQATVEGAEPISVVWFKDKGEIVRESDNIWISYSENIATLQFSRAEMANAGKYTCQIRNDAGMQECFATVSILG", "length": 563, "header": "tr|A0A4X1UAF0-1|A0A4X1UAF0_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1UAF0-1" }, "locus": { "chromosome": "15", "start_pos": 84411489, "end_pos": 84406879, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052403.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052403.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058104.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058104.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UAF0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAF0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 166, "end_pos": 168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 346, "end_pos": 348, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1UAF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAF0" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 87, "start_aa": "Gly", "end_aa": "Val", "glycosite_overlap": "" } ], 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Classification" ] }, { "id": "PTHR14119:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14119:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00857", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00857", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020950699", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950699", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1UAV9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UAV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UDH4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UDH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UDH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UDH4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW66", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW66-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW66-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVRPGLGRVVPGSSILFLCDMQEKFRHTLYFPQIVSVAARMLKVARLLDVPVVLTEQYPQGLGPTVPELGAKGLQPRPKTCFSMVPVVQHELDARPQLRSVLLCGLETQACILHTALDLLDQGLQVHVVVDACTSRSQVDRLVALSRMRQSGAFLSTSEGLILQLVGDAAHPQFKEIQKIIKEPTPDSGLLGLFHGQNPLFR", "length": 204, "header": "tr|A0A4X1UAV9-1|A0A4X1UAV9_PIG Isoform 1 of Isochorismatase domain containing 2 OS=Sus scrofa OX=9823 GN=ISOC2 PE=1 SV=1 CANONICAL=A0A4X1UAV9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UAV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAV9/entry#A0A4X1UAV9-1", "sequence": { "sequence": "MAAVRPGLGRVVPGSSILFLCDMQEKFRHTLYFPQIVSVAARMLKVARLLDVPVVLTEQYPQGLGPTVPELGAKGLQPRPKTCFSMVPVVQHELDARPQLRSVLLCGLETQACILHTALDLLDQGLQVHVVVDACTSRSQVDRLVALSRMRQSGAFLSTSEGLILQLVGDAAHPQFKEIQKIIKEPTPDSGLLGLFHGQNPLFR", "length": 204, "header": "tr|A0A4X1UAV9-1|A0A4X1UAV9_PIG Isoform 1 of Isochorismatase domain containing 2 OS=Sus scrofa OX=9823 GN=ISOC2 PE=1 SV=1 CANONICAL=A0A4X1UAV9-1" }, "locus": { "chromosome": "6", "start_pos": 59605250, "end_pos": 59602436, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003653.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003653.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003568.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003568.3" } ] } }, { "isoform_ac": "A0A4X1UDH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAV9/entry#A0A4X1UDH4-1", "sequence": { "sequence": "MAAVRPGLGRVVPGSSILFLCDMQEKFRHTLYFPQIVSVAARMLKHTALDLLDQGLQVHVVVDACTSRSQVDRLVALSRMRQSGAFLSTSEGLILQLVGDAAHPQFKEIQKIIKEPTPDSGLLGLFHGQNPLFR", "length": 134, "header": "tr|A0A4X1UDH4-1|A0A4X1UDH4_PIG Computationally mapped isoform of Isochorismatase domain containing 2 OS=Sus scrofa OX=9823 GN=ISOC2 PE=1 SV=1 CANONICAL=A0A4X1UAV9-1" }, "locus": { "chromosome": "6", "start_pos": 59605250, "end_pos": 59602436, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086766.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086766.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069509.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069509.1" } ] } }, { "isoform_ac": "A0A5G2QW66-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAV9/entry#A0A5G2QW66-1", "sequence": { "sequence": "MAAVRPGLGRVVPGSSILFLCDMQEKFRHTLYFPQIVSVAARMLKVARLLDVPVVLTEQYPQGLGPTVPELGAKGLQPRPKTCFSMVPVVQHELDARPQLRSVLLCGLETQASRTLVLPGVAGLALTSFCAQHTALDLLDQGLQVHVVVDACTSRSQVDRLVALSRMRQSGAFLSTSEGLILQLVGDAAHPQFKEIQKIIKEPTPDSGLLGLFHGQNPLFR", "length": 221, "header": "tr|A0A5G2QW66-1|A0A4X1UAV9_PIG Computationally mapped isoform of Isochorismatase domain containing 2 OS=Sus scrofa OX=9823 GN=ISOC2 PE=1 SV=2 CANONICAL=A0A4X1UAV9-1" }, "locus": { "chromosome": "6", "start_pos": 59605250, "end_pos": 59602436, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083690.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083690.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062429.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062429.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 67, "start_aa": "Thr", "end_pos": 67, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr67", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW66", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW66" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518558", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518558", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GL72-1", "protein_name": "Isochorismatase domain containing 2A", "gene_name": "Isoc2a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAARASLGRIRPESSILFLCDMQEKFRPSIAYFPQIVSVAARMLKVARLLDVPILLTEQYPQGLGPTVPELGAQGIKPVSKTCFSMVPSLQKELDRRSQLQSVLLCGIETQACILNTVLDLLDRGLQVHVVVDACSSRSQIDRLVALGRMRQSGAFLSTSESLILQLVRDAAHPQFKEIQKIIKEPAPDSGLLGLFQESWIGRTIHVYLVISS", "length": 214 }, "evidence": [ { "id": "A0A4X1UAV9", "url": "https://omabrowser.org/oma/group/A0A4X1UAV9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0JME6-1", "protein_name": "Isochorismatase domain-containing protein 2", "gene_name": "isoc2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAGIGRLSTKGSVLLLCDMQEKFRPTIFQFTNVVSNAARLLQACRILNIPQILTEQYPKGLGPTVPELGAEGLKPHTKTSFSMMTESVQSSLKSMGDPQQVILCGIEAQACIACTAYDLLERGMEVHIVADAVSSRSQTDRLFALSRLRQSGVFLNTTEGVLLQLVQDAKHPNFKEIQKLLAHPSPDTGLLAFFSSL", "length": 197 }, "evidence": [ { "id": "A0A4X1UAV9", "url": "https://omabrowser.org/oma/group/A0A4X1UAV9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P85094-1", "protein_name": "Isochorismatase domain-containing protein 2A", "gene_name": "Isoc2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAARASLGRILPESSILFLCDLQEKFRPSIAYFPQIVSVAARMLKVARLLDVPILLTEQYPEGLGPTVPELGAQGIRPVSKTCFSMVPALQKELDGRSQLQSVLLCGIETQACILNTALDLLHRGLQVHVVVDACSSRSQVDRLVALARMRQSGAFLATSESLILQLVRDASHPQFKEIQKIIKEPVPDSGLLSLFQGQSPLTSC", "length": 206 }, "evidence": [ { "id": "A0A4X1UAV9", "url": "https://omabrowser.org/oma/group/A0A4X1UAV9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54NZ8-1", "protein_name": "Isochorismatase family protein 1B", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIRSLGKIVPETSALFICDIQSKFANHIFKFNGVVNQSKYMMRVCNELKVPIIFTEQYPKGLGHTFEDLLKERNENNQTKIFEKTLYSMCTNEVLNHLKQNHKDLKSILITGIETHVCVLQSTLDFLENGYDVHILSDAVSSNNNNDRLIALERMRQSGAFITTTESIIFQLTRDATHKSFKSIVPITKQRRDDLVADPSLSLSKM", "length": 206 }, "evidence": [ { "id": "A0A4X1UAV9", "url": "https://omabrowser.org/oma/group/A0A4X1UAV9/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q96AB3-1", "protein_name": "Isochorismatase domain-containing protein 2", "gene_name": "ISOC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAARPSLGRVLPGSSVLFLCDMQEKFRHNIAYFPQIVSVAARMLKVARLLEVPVMLTEQYPQGLGPTVPELGTEGLRPLAKTCFSMVPALQQELDSRPQLRSVLLCGIEAQACILNTTLDLLDRGLQVHVVVDACSSRSQVDRLVALARMRQSGAFLSTSEGLILQLVGDAVHPQFKEIQKLIKEPAPDSGLLGLFQGQNSLLH", "length": 205 }, "evidence": [ { "id": "A0A4X1UAV9", "url": "https://omabrowser.org/oma/group/A0A4X1UAV9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UAV9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAV9" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UAV9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAV9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UAV9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAV9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein destabilization", "id": "GO:0031648", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031648", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UAV9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAV9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1UAV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAV9" }, { "id": "PF00857", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00857" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Isochorismatase-like", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 161, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 67 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UAW1-1", "uniprot_ac": "A0A4X1UAW1", "uniprot_id": "A0A4X1UAW1_PIG", "mass": { "chemical_mass": 23710.0, "monoisotopic_mass": 23710.0 }, "refseq": {}, "gene_names": [ { "name": "LOC110255329", "type": "recommended", "evidence": [ { "id": "A0A4X1UAW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAW1" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1UAW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAW1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UAW1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAW1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110255329", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAW1", "locus": {} } ], "crossref": [ { "id": "A0A4X1UAW1", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1UAW1", "database": "AlphaFoldDB", "categories": [] }, { "id": "CPVEVPW", "url": "https://omabrowser.org/oma/group/CPVEVPW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1UAW1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UAW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UAW1-1", "database": "UniProtKB", 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"categories": [ "Enzyme and Pathway" ] }, { "id": "EVHYWKV", "url": "https://omabrowser.org/oma/group/EVHYWKV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1UCG1", "url": "https://www.orthodb.org/?gene=A0A4X1UCG1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR39232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR39232:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39232:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003130357", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130357", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1UCG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UCG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UCG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UCG1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTQGLSLIFSLLVICFFRGSLCICDGTTWTKVGWEIFPEEMHYLKVKPPPSHCLPYPLDKLCCSFANTDIFQGCLHLTYILAQALLLILFVLSAHYLWMKWKKHKKKLKKQASLDTSGNDIENQSVYDIDQILFKLVATTSMMTKYLNQVSHHPPAKKVKHRKLKRKKSEGGEGLRRY", "length": 179, "header": "tr|A0A4X1UCG1-1|A0A4X1UCG1_PIG Isoform 1 of Testis expressed 50 OS=Sus scrofa OX=9823 GN=TEX50 PE=4 SV=1 CANONICAL=A0A4X1UCG1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UCG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UCG1/entry#A0A4X1UCG1-1", "sequence": { "sequence": "MSTQGLSLIFSLLVICFFRGSLCICDGTTWTKVGWEIFPEEMHYLKVKPPPSHCLPYPLDKLCCSFANTDIFQGCLHLTYILAQALLLILFVLSAHYLWMKWKKHKKKLKKQASLDTSGNDIENQSVYDIDQILFKLVATTSMMTKYLNQVSHHPPAKKVKHRKLKRKKSEGGEGLRRY", "length": 179, "header": "tr|A0A4X1UCG1-1|A0A4X1UCG1_PIG Isoform 1 of Testis expressed 50 OS=Sus scrofa OX=9823 GN=TEX50 PE=4 SV=1 CANONICAL=A0A4X1UCG1-1" }, "locus": { "chromosome": "9", "start_pos": 115972261, "end_pos": 115970589, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064568.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064568.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055153.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055153.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UCG1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UCG1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516287", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516287", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1B0GTY4-1", "protein_name": "Testis-expressed protein 50", "gene_name": "TEX50", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSNQRLPLIFSLLFICFFGESFCICDGTVWTKVGWEILPEEVHYWKVKGSPSHCLPYLLDKLCCDFANMDIFQGCLYLIYNLLQAVFFVLFVLSVHYLWKKWKKHQKKLKKQASLEKPGNDLESPLINNIDQTLHRVATTASVIYKIWEHRSHHPSSKKIKHCKLKKKSKEEGARRY", "length": 177 }, "evidence": [ { "id": "A0A4X1UCG1", "url": "https://omabrowser.org/oma/group/A0A4X1UCG1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "G3N0F7-1", "protein_name": "Testis expressed 50", "gene_name": "TEX50", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSTQGLSLIFTLLFICFFRESFCICDGTTWTKVGWEIFPEEMHYLKVKTAPSHCLPYPLDKLCCNFANMDIFHGCLNLIYILIQALFLILSVLSAHYLWMKWKKHKKKLNKQVSLDTPGKDLETQSVYDIDQILCRLVATTSMMTKYLNQMSHHPQAKKAKHRKLKRKTTEGGEGGRVY", "length": 179 }, "evidence": [ { "id": "A0A4X1UCG1", "url": "https://omabrowser.org/oma/group/A0A4X1UCG1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9D5B7-1", "protein_name": "Testis-expressed protein 50", "gene_name": "Tex50", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTQRLSVLSPLLLFCFFRETFSICDGTTWTKVGWEIFPEEVHYLKVKAPPSSCLPYPLDTLCCNFANMDLLQSALHLTYILVQALCLILFALSVHYLWMKWTRHQKKLKKQASLEKHANGLDLSPSIHDIEQILCRLLATTSMMTKFLKHVSHHSSVKKAKQQRKLRKKKSKGEEEQKITAIPKLVQM", "length": 189 }, "evidence": [ { "id": "A0A4X1UCG1", "url": "https://omabrowser.org/oma/group/A0A4X1UCG1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 124, "end_pos": 126, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 124, "end_pos": 126 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UCV3-1", "uniprot_ac": "A0A4X1UCV3", "uniprot_id": "A0A4X1UCV3_PIG", "mass": { "chemical_mass": 87312.0, "monoisotopic_mass": 87312.0 }, "refseq": { "ac": "XP_013848686", "name": "protein Lines homolog 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848686" }, "gene_names": [ { "name": "LINS1", "type": "recommended", "evidence": [ { "id": "A0A4X1UCV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UCV3" } ] }, { "name": "LINS1", "type": "synonym", "evidence": [ { "id": "XP_013848686", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848686" } ] } ], "protein_names": [ { "name": "Lines homolog 1", "type": "synonym", "evidence": [ { "id": "A0A4X1UCV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UCV3/entry#names_and_taxonomy" } ] }, { "name": "protein Lines homolog 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013848686", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848686" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UCV3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UCV3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LINS1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UCV3", "locus": { "chromosome": "1", "start_pos": 139168785, "end_pos": 139191163, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004820", "url": "https://www.ensembl.org/id/ENSSSCG00000004820" } ] } } ], "crossref": [ { "id": "A0A4X1UCV3", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1UCV3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004820", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004820", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154247", "url": "https://www.ncbi.nlm.nih.gov/gene/100154247", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029415", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029415", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032794", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032794", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154247", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154247", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1UCV3", "url": "https://www.orthodb.org/?gene=A0A4X1UCV3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16057", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16057", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16057:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16057:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14694", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14694", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14695", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14695", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013848686", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848686", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1UCV3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UCV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UCV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UCV3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR95", "url": "https://www.uniprot.org/uniprotkb/F1SR95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR95-1", "url": "https://www.uniprot.org/uniprotkb/F1SR95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKAFFEVLEQLYNKVLLGATLENDSHDYTFYLNPASSDQDCSRTTSSDCSNTLEVQCKHQPSSVHLATLSVAKETVAPLCLKRPSQMSSTREIVLLQLTVIRVMITRILSVETELHAKEKYRDIIKLLLQSSDIDSKLTCMFQNSDKLLSHMAAKCLALLLYFQLKEKVTLSNSWISFCQKNLSEYSESDEVVYSLWILTAVIKEIFRDTCSQKTEILKQFLTPFDTIFEVFYNSLFSQHFENHQDTSKLINSLICFLELLELLIASRIHLKLHFICQRILFLKPSCVLDVITWPVQAFVKRKFIIFIKKCLLCKMGEDVCQGSVPAFMPPDHHFDVDMLALADAVLQAVDLGLLRTLSVHGKPSCFGGDEVQPGCEHVPGPDHVMLRAASLLIIRSLEIKFQNCASAKEMKVDLQRFMFELLTFLKPHLQPSLRSYNLCEWLPRVFIEQDDDMLEAAKASMGVYLKLTRECEATESLTQEKEMWNHHTHENGYNPHCIFLFLLKNIGFDSTVLLDFLISSETCFLEYFVRYLKLLQKDWDNFFTICKYFDVAESKDNINICYHTFSLVQDRSSNQREPSPLAALSSHRNTCARVFWASDASSEPLKQAAMSSKAHTTLQDNSLSPPQAPQSLVDYDSSDDSEDESTNQPLTNSGLTSLHQEAMKKIQDTVGTSRDKKEFSLEPQSRLLVPKEFDTPSPVDCDMTPNNTASEVELSYKTVKCFEELQGAIYRLQKRHLFPYNPTALLKLLKHIETIYNKSMNSL", "length": 764, "header": "tr|A0A4X1UCV3-1|A0A4X1UCV3_PIG Isoform 1 of Lines homolog 1 OS=Sus scrofa OX=9823 GN=LINS1 PE=4 SV=1 CANONICAL=A0A4X1UCV3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UCV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UCV3/entry#A0A4X1UCV3-1", "sequence": { "sequence": "MKAFFEVLEQLYNKVLLGATLENDSHDYTFYLNPASSDQDCSRTTSSDCSNTLEVQCKHQPSSVHLATLSVAKETVAPLCLKRPSQMSSTREIVLLQLTVIRVMITRILSVETELHAKEKYRDIIKLLLQSSDIDSKLTCMFQNSDKLLSHMAAKCLALLLYFQLKEKVTLSNSWISFCQKNLSEYSESDEVVYSLWILTAVIKEIFRDTCSQKTEILKQFLTPFDTIFEVFYNSLFSQHFENHQDTSKLINSLICFLELLELLIASRIHLKLHFICQRILFLKPSCVLDVITWPVQAFVKRKFIIFIKKCLLCKMGEDVCQGSVPAFMPPDHHFDVDMLALADAVLQAVDLGLLRTLSVHGKPSCFGGDEVQPGCEHVPGPDHVMLRAASLLIIRSLEIKFQNCASAKEMKVDLQRFMFELLTFLKPHLQPSLRSYNLCEWLPRVFIEQDDDMLEAAKASMGVYLKLTRECEATESLTQEKEMWNHHTHENGYNPHCIFLFLLKNIGFDSTVLLDFLISSETCFLEYFVRYLKLLQKDWDNFFTICKYFDVAESKDNINICYHTFSLVQDRSSNQREPSPLAALSSHRNTCARVFWASDASSEPLKQAAMSSKAHTTLQDNSLSPPQAPQSLVDYDSSDDSEDESTNQPLTNSGLTSLHQEAMKKIQDTVGTSRDKKEFSLEPQSRLLVPKEFDTPSPVDCDMTPNNTASEVELSYKTVKCFEELQGAIYRLQKRHLFPYNPTALLKLLKHIETIYNKSMNSL", "length": 764, "header": "tr|A0A4X1UCV3-1|A0A4X1UCV3_PIG Isoform 1 of Lines homolog 1 OS=Sus scrofa OX=9823 GN=LINS1 PE=4 SV=1 CANONICAL=A0A4X1UCV3-1" }, "locus": { "chromosome": "1", "start_pos": 139176953, "end_pos": 139168864, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028739.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028739.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023553.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023553.3" } ] } }, { "isoform_ac": "F1SR95-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UCV3/entry#F1SR95-1", "sequence": { "sequence": "MAVRSQGGSSWFPAASSDQDCSRTTSSDCSNTLEVQCKHQPSSVHLATLSVAKETVAPLCLKRPSQMSSTREIVLLQLTVIRVMITRILSVETELHAKEKYRDIIKLLLQSSDIDSKLTCMFQNSDKLLSHMAAKCLALLLYFQLKEKVTLSNSWISFCQKNLSEYSESDEVVYSLWILTAVIKEIFRDTCSQKTEILKQFLTPFDTIFEVFYNSLFSQHFENHQDTSKLINSLICFLELLELLIASRIHLKLHFICQRILFLKPSCVLDVITWPVQAFVKRKFIIFIKKCLLCKMGEDVCQGSVPAFMPPDHHFDVDMLALADAVLQAVDLGLLRTLSVHGKPSCFGGDEVQPGCEHVPGPDHVMLRAASLLIIRSLEIKFQNCASAKEMKVDLQRFMFELLTFLKPHLQPSLRSYNLCEWLPRVFIEQDDDMLEAAKASMGVYLKLTRECEATESLTQEKEMWNHHTHENGYNPHCIFLFLLKNIGFDSTVLLDFLISSETCFLEYFVRYLKLLQKDWDNFFTICKYFDVAESKDNINICYHTFSLVQDRSSNQREPSPLAALSSHRNTCARVFWASDASSEPLKQAAMSSKAHTTLQDNSLSPPQAPQSLVDYDSSDDSEDESTNQPLTNSGLTSLHQEAMKKIQDTVGTSRDKKEFSLEPQSRLLVPKEFDTPSPVDCDMTPNNTASEVELSYKTVKCFEELQGAIYRLQKRHLFPYNPTALLKLLKHIETIYNKSMNSL", "length": 744, "header": "tr|F1SR95-1|A0A4X1UCV3_PIG Computationally mapped isoform of Lines homolog 1 OS=Sus scrofa OX=9823 GN=LINS1 PE=4 SV=4 CANONICAL=A0A4X1UCV3-1" }, "locus": { "chromosome": "1", "start_pos": 139191136, "end_pos": 139168864, 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253 }, "evidence": [ { "id": "A0A4X1UF97", "url": "https://omabrowser.org/oma/group/A0A4X1UF97/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MDK7-1", "protein_name": "Testis expressed 47", "gene_name": "TEX47", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSFGTHPRKTNKKNLPLESLMPQVPRSNYLQFQEEKQRLQLKKFLLHRMFLVARITANIEKKDIADYYEQLFQSILKRHLGEAVTGLLLIYPTSILHILESSSGTFYQILLDYLSHKKDEMEFFIQGMKIIVMSHNIPTRLFMQWHVSVIKAPVMYLDDVTQTQSLQEVMMEFLIQTHKLALHLFKTVKVSPKGPGDSLHQAAPELLLPEQIIKYLCNSAELMDPEGFINMYNKPIHVTLDSEVVWPAPSRF", "length": 252 }, "evidence": [ { "id": "A0A4X1UF97", "url": "https://omabrowser.org/oma/group/A0A4X1UF97/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8TBZ9-1", "protein_name": "Testis-expressed protein 47", "gene_name": "TEX47", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"categories": [ "Protein Classification" ] }, { "id": "PF14983", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14983", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1UGG5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UGG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGG5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASGKDTWPVLPKLNSNSSEENLYKSAHKFEAIHLPRFSLKQELIPRHYVMPWKENMKFRKVNLKHAEACRIHAGPLEDTLFLNHSERLCHGEDRKVVLKKGPPEIKIADMPLHSPLSRYQSTVISLGFRRRLV", "length": 134, "header": "tr|A0A4X1UGG5-1|A0A4X1UGG5_PIG Isoform 1 of Sperm microtubule inner protein 10 OS=Sus scrofa OX=9823 GN=SPMIP10 PE=4 SV=1 CANONICAL=A0A4X1UGG5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UGG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGG5/entry#A0A4X1UGG5-1", "sequence": { "sequence": 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Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UGG5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UGG5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A8SMG2-1", "protein_name": "Sperm-associated microtubule inner protein 10", "gene_name": "SPMIP10", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UI96-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UI96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIAISAVSSALLFSLLCEASAVVLLNSTDSSPPTNNFTDIEAALRAQLDSADIPKVRRKRYISQNDMIAILDYHNQVRGKVFPPAANMEYMVWDENLAKSAEAWAATCIWDHGPSYLLRFLGQNLSVRTGRYRSILQLVKPWYDEVKDYAFPYPQDCNPRCPMRCFGPMCTHYTQMVWATSNRIGCAIHTCQNMNVWGAVWRRAVYLVCNYAPKGNWIGEAPYKVGVPCSACPPSYGGSCTDNLCFPGVTSNYLYWFK", "length": 258, "header": "tr|A0A4X1UI96-1|A0A4X1UI96_PIG Isoform 1 of Peptidase inhibitor 15 OS=Sus scrofa OX=9823 GN=PI15 PE=3 SV=1 CANONICAL=A0A4X1UI96-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UI96-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UI96/entry#A0A4X1UI96-1", "sequence": { "sequence": 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"https://www.ensembl.org/id/ENSSSCP00000074932.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F6R8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6R8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100628136", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100628136", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HRD2-1", "protein_name": "Protein FAM131A isoform X2", "gene_name": "Fam131a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPMISVLGKMFLWQREGPGGRWTCQTSRRVASDPAWAVEWIELPRGLSLSSLGSARTLRGWSRSPRPSSVDSQDLPEVNVGDTVAMLPKSRRALTIQEIAALARSSLHGISQVVKDHVTKPTAMAQGRVAHLIEWKGWSKPSDSPAALESAFSSYSDLSEGEQEARFAAGVAEQFAIAEAKLRAWSSVDGDDSTDDSYDEDFTGGIDTDMAGPLGTHLQDLFTGRRFSRPVRQGSVEPESDCSQTVSPDTLCSSLCSLEDGLLGSPARMTSQMLGEELLLARLPPSRESAFRSLGPLEAQDSLYNSPLTESCLSPTEEEPDSCKDHPLLCPLPVGSWERQQQVSDVASSGVVSLDEDEVEPEDQ", "length": 364 }, "evidence": [ { "id": "A0A4X1UIP4", "url": "https://omabrowser.org/oma/group/A0A4X1UIP4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0Z912-1", "protein_name": "Family with sequence similarity 131 member A", "gene_name": "FAM131A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGCIGSKTTIVAVDTTLCVEWKEVKALSPLRAARPAPLPRLLRQASFDSQDFLEVNVEDTVEMLPKSRRALTIQEIAALARSSLHGISQVVKEHVTKPTAMAQGRVAHLIEWKGWCKPVEPPTALESAFNSYCHLSEGEQEARFAAGVAEQFAIAEAKLRAWSSVDGDDSNDESYDEDFMPSSESSLPAEHHPGAALLRDLLRGHLCQLGARHGSCEPESDSSHTLSPKTLCSSLCSLEMVSPSELTAKLLGSLGGELPPPSSQSALRGLVWPRCQDSLSPMPYAEACLSPAEDEVVLSKDFALRRKISDVASSGVVSLEEEDEEEEEEEEEDEAEEP", "length": 338 }, "evidence": [ { "id": "A0A4X1UIP4", "url": "https://omabrowser.org/oma/group/A0A4X1UIP4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4ADK8-1", "protein_name": "Family with sequence similarity 131, member A", "gene_name": "Fam131a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPMISVLGKMFLWQREGPGGRWTCQTSRRVASDPAWAVEWIELPRGLSLSSLGSARTLRGWSRSPRPSSVDSQDLPEVNVGDTVAMLPKSRRALTIQEIAALARSSLHGISQVVKDHVTKPTAMAQGRVAHLIEWKGWSKPSDSPAALESAFSSYSDLSEGEQEARFAAGVAEQFAIAEAKLRAWSSVDGDDSTDDSYDEDFTGGADTDMAGPLGSHLQDLFTGRRFSRPVRQGSVEPESDCSQTVSPDTLCSSLCSLEDGLLGSPARMTSQMLGEELLLARLPPSRESAFRSLGPLEAQDSLYNSPLSESCLSPAEEEPDSCKDCQLLCPLPTGSWERQQQVSEVASSGVASLDEDEVDQ", "length": 361 }, "evidence": [ { "id": "A0A4X1UIP4", "url": "https://omabrowser.org/oma/group/A0A4X1UIP4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MJN3-1", "protein_name": "Family with sequence similarity 131 member A", "gene_name": "FAM131A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPMISVLGKMFLWQREGPGGRWTCQTSRRVASDPAWAVEWIELPRGLSLSSLGSARTLRGWSRSSRPSSVDSQDLPEVNVGDTIAMLPKSRRALTIQEIAALARSSLHGISQVVKDHVTKPTAMAQGRVAHLIEWKGWSKPSDSPAALESAFSSYSDLSEGEQEARFAAGVAEQFAIAEAKLRAWSSVDGEDSTDESYDEDFAGGTDSDLTGQMPLGPHLQDLFTGHRFSRPVRQGSVEPESDCSQTVSPETLCSSLCSLEDGLLGSPARLASQLLGDELLLAKLPPSRESAFRSLGPLEAQDSLYNSPLTESCLSPAEEEPAPCKDCQPLCLPPVSSWERQRQASDVASSGVVSLDEDEVEPEEQ", "length": 366 }, "evidence": [ { "id": "A0A4X1UIP4", "url": "https://omabrowser.org/oma/group/A0A4X1UIP4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6UXB0-3", "protein_name": "Protein FAM131A", "gene_name": "FAM131A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPMISVLGKMFLWQREGPGGRWTCQTSRRVSSDPAWAVEWIELPRGLSLSSLGSARTLRGWSRSSRPSSVDSQDLPEVNVGDTVAMLPKSRRALTIQEIAALARSSLHGISQVVKDHVTKPTAMAQGRVAHLIEWKGWSKPSDSPAALESAFSSYSDLSEGEQEARFAAGVAEQFAIAEAKLRAWSSVDGEDSTDDSYDEDFAGGMDTDMAGQLPLGPHLQDLFTGHRFSRPVRQGSVEPESDCSQTVSPDTLCSSLCSLEDGLLGSPARLASQLLGDELLLAKLPPSRESAFRSLGPLEAQDSLYNSPLTESCLSPAEEEPAPCKDCQPLCPPLTGSWERQRQASDLASSGVVSLDEDEAEPEEQ", "length": 366 }, "evidence": [ { "id": "A0A4X1UIP4", "url": "https://omabrowser.org/oma/group/A0A4X1UIP4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BWU3-1", "protein_name": "Protein FAM131A", "gene_name": "Fam131a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPMISVLGKMFLWQREGPGGRWTCQTSRRVASDPAWAVEWIELPRGLSLSSLGSARTLRGWSRSPRPSSVDSQDLPEVNVGDTVAMLPKSRRALTIQEIAALARSSLHGISQVVKDHVTKPTAMAQGRVAHLIEWKGWSKPSDSPAALESAFSSYSDLSEGEQEARFAAGVAEQFAIAEAKLRAWSSVDGDDSTDDSYDEDFTGGIDTDMAGPLGSHLQDLFTGRRFSRPVRQGSVEPESDCSQTVSPDTLCSSLCSLEDGLLGSPARMTSQLLGEELLLARLPPSRESAFRSLGPLEAQDSLYNSPLSESCLSPAEEEPDSCKDCQLLCPLPTGSWERQQQVSDVASSGVVSLDEDEVDQ", "length": 361 }, "evidence": [ { "id": "A0A4X1UIP4", "url": "https://omabrowser.org/oma/group/A0A4X1UIP4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UIT0-1", "uniprot_ac": "A0A4X1UIT0", "uniprot_id": "A0A4X1UIT0_PIG", "mass": { "chemical_mass": 27679.0, "monoisotopic_mass": 27679.0 }, "refseq": {}, "gene_names": [ { "name": "C3orf70", "type": "recommended", "evidence": [ { "id": "A0A4X1UIT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UIT0" } ] } ], "protein_names": [ { "name": "Chromosome 13 C3orf70 homolog", "type": "synonym", "evidence": [ { "id": "A0A4X1UIT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UIT0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UIT0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UIT0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C3orf70", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UIT0", "locus": { "chromosome": "13", "start_pos": 122958347, "end_pos": 123058655, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038724", "url": "https://www.ensembl.org/id/ENSSSCG00000038724" } ] } } ], "crossref": [ { "id": "A0A4X1UIT0", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1UIT0", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR029670", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029670", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106504156", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504156", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GAHKCPK", "url": "https://omabrowser.org/oma/group/GAHKCPK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1UIT0", "url": "https://www.orthodb.org/?gene=A0A4X1UIT0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31785", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31785", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31785:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31785:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15823", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15823", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1UIT0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UIT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UIT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UIT0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAAAAPVSERGWKSEKVDEAQALARSCAARRPDFQPCDGLSICATHSHGKCFKLHWCCHLGWCHCKYVYQPMTPVEQLPSTEIPAKPREPTNTIQISVSLTEHFLKFASVFQPPLPPDSPRYCMISDLFIDNYQVKCINGKMCYVQKQPAPHSHKMSPEEVSAHDALISKESNTPKIDHCSSPSSSEDSGINAIGAHYVESCDEDTEEGAELSSEEDYSPESSWEPDECTLLSPSQSDLEVIETIETTV", "length": 250, "header": "tr|A0A4X1UIT0-1|A0A4X1UIT0_PIG Isoform 1 of Chromosome 13 C3orf70 homolog OS=Sus scrofa OX=9823 GN=C3orf70 PE=3 SV=1 CANONICAL=A0A4X1UIT0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UIT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UIT0/entry#A0A4X1UIT0-1", "sequence": { "sequence": "MSAAAAPVSERGWKSEKVDEAQALARSCAARRPDFQPCDGLSICATHSHGKCFKLHWCCHLGWCHCKYVYQPMTPVEQLPSTEIPAKPREPTNTIQISVSLTEHFLKFASVFQPPLPPDSPRYCMISDLFIDNYQVKCINGKMCYVQKQPAPHSHKMSPEEVSAHDALISKESNTPKIDHCSSPSSSEDSGINAIGAHYVESCDEDTEEGAELSSEEDYSPESSWEPDECTLLSPSQSDLEVIETIETTV", "length": 250, "header": "tr|A0A4X1UIT0-1|A0A4X1UIT0_PIG Isoform 1 of Chromosome 13 C3orf70 homolog OS=Sus scrofa OX=9823 GN=C3orf70 PE=3 SV=1 CANONICAL=A0A4X1UIT0-1" }, "locus": { "chromosome": "13", "start_pos": 123058355, "end_pos": 122962637, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052369.2", "url": "https://www.ensembl.org/id/ENSSSCT00000052369.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039149.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039149.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UIT0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UIT0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106504156", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504156", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2UF71-1", "protein_name": "Chromosome 3 open reading frame 70", "gene_name": "C3orf70", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSGAAAAKSEKLDEAQALARSCAGRPDFQPCDGLSLCATHSHGRCFRLHWCCHLGWCHCKYVYQPMTPVEQLPSTEIPVRPRESTNTIQISVSLTEHFLKFAPVFQPPLPPDSPQFCTIADLFIDNYRVKCINGKMCYVQRQPPPVPHKTKPEEVSVRNALITKESNTPKTDHCSSPSSSEDSGINAVGVHYMESCDEDTEGVAELSSEEDYSPDSSWEPDECPLLSPSQCEMEVIETIETTV", "length": 243 }, "evidence": [ { "id": "A0A4X1UIT0", "url": "https://omabrowser.org/oma/group/A0A4X1UIT0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8I6A3M1-1", "protein_name": "Similar to human chromosome 3 open reading frame 70", "gene_name": "C11h3orf70", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAATAPERGWKSEKVDEAQALARSCAARRPDFQPCDGLSICATHSHGKCFKLHWCCHLGWCHCKYVYQPMTPVGQLPSTEIPARPREPTNTIQISVSLTEHFLKFASVFQPPLPPDSPRYCMISDLFIDNYQVKCINGKMCYVQKQPHSQKMSPEEVSAHDALISKESDTPKLGHCSSPSGSEDSGINAIGAHYVESCDEDTEEGAELSSEEDYSPESSWEPDECTLLSPSQSDLEVIETMETTV", "length": 246 }, "evidence": [ { "id": "A0A4X1UIT0", "url": "https://omabrowser.org/oma/group/A0A4X1UIT0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A3KNX6-1", "protein_name": "UPF0524 protein C3orf70 homolog B", "gene_name": "c3orf70b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAYSGAQKALKSDKLDEAQALAKSCAGRPDFLPCDGLSICATHSHGKCFKLHWCCYLGWCHCKYVYQPMTNVAQLPSTPVPAAPSDCPDTIDLSISLTERFLRISPCFQAPPCPESPKYCNIAELFIDDYIVKRINGKMCYVQRPQAHVEPAQMNPIQKQHTEDKQIVEETVKGPKMGHCSSPSTSEDSGINALGGHFLESCEEESEEEDELSTDGHSSPGSLWDQDECTLLSPSKSMVEIIENIETTV", "length": 249 }, "evidence": [ { "id": "A0A4X1UIT0", "url": "https://omabrowser.org/oma/group/A0A4X1UIT0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NLC5-1", "protein_name": "UPF0524 protein C3orf70", "gene_name": "C3orf70", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSAAASPASERGWKSEKLDEAQALARSCAARRPDFQPCDGLSICATHSHGKCFKLHWCCHLGWCHCKYMYQPMTPVEQLPSTEIPARPREPTNTIQISVSLTEHFLKFASVFQPPLPPDSPRYCMISDLFIDNYQVKCINGKMCYVQKQPAPHSHRMSPEEVSAHDALISKESNTPKIDHCSSPSSSEDSGINAIGAHYVESCDEDTEEGAELSSEEDYSPESSWEPDECTLLSPSQSDLEVIETIETTV", "length": 250 }, "evidence": [ { "id": "A0A4X1UIT0", "url": "https://omabrowser.org/oma/group/A0A4X1UIT0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A7E369-1", "protein_name": "UPF0524 protein C3orf70 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSAAAAPAPERGWKSEKVDEAQALARSCAARRPDFQPCDGLSICATHSHGKCFKLHWCCHLGWCHCKYVYQPMTPVEQLPSTEIPAKPREPANTIQISVSLTEHFLKFASVFQPPLPPDSPRYCMISDLFIDNYQVKCINGKMCYVQKQPAPHSHKMSPEEVSAHDAFISKESNTPKIDHCSSPSSSEDSGINAIGAHYVESCDEDTEEGAELSSEEDYSPESSWEPDECTLLSPSQSDLEVIETIETTV", "length": 250 }, "evidence": [ { "id": "A0A4X1UIT0", "url": "https://omabrowser.org/oma/group/A0A4X1UIT0/", "database": "OMA" } ], 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UL79-1", "uniprot_ac": "A0A4X1UL79", "uniprot_id": "A0A4X1UL79_PIG", "mass": { "chemical_mass": 112602.0, "monoisotopic_mass": 112602.0 }, "refseq": { "ac": "XP_020953961", "name": "rho GTPase-activating protein 11A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953961" }, "gene_names": [ { "name": "ARHGAP11A", "type": "recommended", "evidence": [ { "id": "A0A4X1UL79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UL79" } ] }, { "name": "ARHGAP11A", "type": "synonym", "evidence": [ { "id": "XP_020953961", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953961" } ] } ], "protein_names": [ { "name": "Rho GTPase-activating protein 11A", "type": "recommended", "evidence": [ { "id": "A0A4X1UL79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UL79/entry#names_and_taxonomy" } ] }, { "name": "Rho-type GTPase-activating protein 11A", "type": "synonym", "evidence": [ { "id": "A0A4X1UL79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UL79/entry#names_and_taxonomy" } ] }, { "name": "rho GTPase-activating protein 11A", "type": "synonym", "evidence": [ { "id": "XP_020953961", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953961" } ] } ], "function": [ { "annotation": "GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UL79", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UL79#function" }, { "database": "UniProtKB", "id": "ARBA00055252", "url": "https://www.uniprot.org/uniprotkb/ARBA00055252#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UL79", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UL79" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARHGAP11A", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UL79", "locus": {} } ], "crossref": [ { "id": "A0A4X1UL79", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1UL79", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04394", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04394", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157473", "url": "https://www.ncbi.nlm.nih.gov/gene/100157473", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157473", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157473", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RQPIRHK", "url": "https://omabrowser.org/oma/group/RQPIRHK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1UL79", "url": "https://www.orthodb.org/?gene=A0A4X1UL79", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15670", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15670", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15670:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15670:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8980692", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020953961", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953961", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1UL79", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UL79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UL79-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UL79-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWDQKLVRLAVVQQLRAVYGIKVKGGRGQCDRRRQEAASTEKVGKIFGVPFNTLPQSLVPEYGHIPSFLVDACTSLEEHIHTEGLFRKSGSVIRLKALKNKLDHGERCLSSAPPCDIAGLLKQFFRELPEPILPGDLHEALFKAQQLRTEEKNTATLLLSCLLADHTIDLLRYFFNFLRKVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSANTEKKLRLQAAVVQTLIDYASDIGHVPDIILEKIPGMLGIDGLCATPSLEGFEEGDYETPGDYKRKRRQSVGDFVSGALNKLKSSRTPSITPQQERTAQLSESPILTPNAKRKLPVDSHGFSSKKRRSIKHNFNFELLPSNLFSSSSTPVSVHFDTSPEGSSQGSLSPVAISGNHLISTGMLRRSKRIASKKVCRVESGKAGCFSPKISRKEKVRRSLRLKFSLGKSSKDGNACSGVDRSENVGRRLASQQSLKNRIESVKTGLLFSPDIDERLTKKGSKKISKSEENLLTPERPGGKSYRMSWTGPSGSSFQEIDGNETSPKDGTLEVENSSLEPDIMLEKSPVSAYEPTPSNVHNKHNNSITGSSLSGDENNLTTETVMKIQKAFSESGSNLHALINHGQSSLTNVEKVKFNETSSIEYSPEKNLFETNNLTVIESNEHHTYKDENSFSEGDLSLHQMQKLDSEITIKCYSTQMKIELESSIHSHIPKDDVSKQELPSDEQIKQESPGDTLNTKLKENENVIELLKSAASREDVASTSSSGQLTCNNANVSKPRPVRIAKQQSLVETCAKTVSERLQMTEHGKVSDHIQWFNKLSLNEPNQTKVKSPLKFQRTPVRQSVRRINSLLEYGGQPPRHKLASLGDTASPLVKSVSCDSALPSHIESTSKDSSIPRTKSGPKEQKSTSCKQTNTDMISKSSMELTCTSFSQMKRHPHSVNASVRSTRVCKQEVISNGQIKVPLDDLTNHDISKSVVNNDMGFSIGINNNKILRKPSEKERVWYKGSPKNPIGKAQLLPSSKPVDL", "length": 1018, "header": "tr|A0A4X1UL79-1|A0A4X1UL79_PIG Isoform 1 of Rho GTPase-activating protein 11A OS=Sus scrofa OX=9823 GN=ARHGAP11A PE=4 SV=1 CANONICAL=A0A4X1UL79-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UL79-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UL79/entry#A0A4X1UL79-1", "sequence": { "sequence": "MWDQKLVRLAVVQQLRAVYGIKVKGGRGQCDRRRQEAASTEKVGKIFGVPFNTLPQSLVPEYGHIPSFLVDACTSLEEHIHTEGLFRKSGSVIRLKALKNKLDHGERCLSSAPPCDIAGLLKQFFRELPEPILPGDLHEALFKAQQLRTEEKNTATLLLSCLLADHTIDLLRYFFNFLRKVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSANTEKKLRLQAAVVQTLIDYASDIGHVPDIILEKIPGMLGIDGLCATPSLEGFEEGDYETPGDYKRKRRQSVGDFVSGALNKLKSSRTPSITPQQERTAQLSESPILTPNAKRKLPVDSHGFSSKKRRSIKHNFNFELLPSNLFSSSSTPVSVHFDTSPEGSSQGSLSPVAISGNHLISTGMLRRSKRIASKKVCRVESGKAGCFSPKISRKEKVRRSLRLKFSLGKSSKDGNACSGVDRSENVGRRLASQQSLKNRIESVKTGLLFSPDIDERLTKKGSKKISKSEENLLTPERPGGKSYRMSWTGPSGSSFQEIDGNETSPKDGTLEVENSSLEPDIMLEKSPVSAYEPTPSNVHNKHNNSITGSSLSGDENNLTTETVMKIQKAFSESGSNLHALINHGQSSLTNVEKVKFNETSSIEYSPEKNLFETNNLTVIESNEHHTYKDENSFSEGDLSLHQMQKLDSEITIKCYSTQMKIELESSIHSHIPKDDVSKQELPSDEQIKQESPGDTLNTKLKENENVIELLKSAASREDVASTSSSGQLTCNNANVSKPRPVRIAKQQSLVETCAKTVSERLQMTEHGKVSDHIQWFNKLSLNEPNQTKVKSPLKFQRTPVRQSVRRINSLLEYGGQPPRHKLASLGDTASPLVKSVSCDSALPSHIESTSKDSSIPRTKSGPKEQKSTSCKQTNTDMISKSSMELTCTSFSQMKRHPHSVNASVRSTRVCKQEVISNGQIKVPLDDLTNHDISKSVVNNDMGFSIGINNNKILRKPSEKERVWYKGSPKNPIGKAQLLPSSKPVDL", "length": 1018, "header": "tr|A0A4X1UL79-1|A0A4X1UL79_PIG Isoform 1 of Rho GTPase-activating protein 11A OS=Sus scrofa OX=9823 GN=ARHGAP11A PE=4 SV=1 CANONICAL=A0A4X1UL79-1" }, "locus": { "chromosome": "1", "start_pos": 136521413, "end_pos": 136498207, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005305.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005305.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005175.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005175.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 261, "start_aa": "Thr", "end_pos": 261, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr261", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 566, "start_aa": "Thr", "end_pos": 566, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr566", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UL79", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UL79" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157473", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157473", "resource": "KEGG Pathway" }, { "id": "R-SSC-8980692", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "resource": "Reactome", "description": "RHOA GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4ILK3-1", "protein_name": "Rho GTPase-activating protein 11A isoform 1", "gene_name": "arhgap11a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRVLERNVVRLAVVQHLRSVYGIRIKNWNKNRSKQTSANTVRVFGVALEGLPHSHVLDYGDLPCFLVDICTTLLDHLDTEGLFRKSGSVVRVKSLRAKLDQGEDCLSAALPLDIAGLLKQFFRELPEPVLTVDLHSAFLKAQELPTAEERTSATVLLSCVLPDTNLNTLRYFFSFLKTVSQRCAENKMDSSNLAVIFAPNLFHCGDGGEKMSSSTEKRLKHQAAAVQCLIENAQRIGVVPQFLMEKVPAMLGCDAAVFSPSAVSPEDSNAHFDLKKSNRRSLGDVVNGALNRLKASRTPTNTPHSDGAVFSMATPVIMTPNSKRKLPLESSQTHGFSNKKRRSIKKNLGLELFPSVLFGGTSTPGSTHSAAGVLDSSHSGLLSSVGRNSRLSSSSARRKSRRLRDRSVSRVESGKAGCFSPRTAKKEPVRKSLRLRFSLGKSSRDSNLITHSQPVPKGSEVIGWRLATQESSTGFHFTKELSLPVLSKSPSKGSKFFSKSEDNLSTPQCDFTDHRSSWTGETPETGLTFPTDSFSETPLIIVSKPPTISSVPETTPEECSHTGHTLLKIRQAFGESGSDLHSIITQKDQQDDSSNVHLPSETAHKSISESGQSNDDVTFGQIEIVPLSPLHIDSALFDSEPTRFVETSLNGSLCFKNEYLKESAVRSVNCSQIIDALDIQSPVAFRLDTSTRVQSTPYATRSQVNANTSLQDELRASSLVEKKIESSQEQQNNAESKKSKVADQIKLFNMMTLHSPKVQLLRSPLKFQRTPVRQSVTRINSLAGKRKESRMGWCAASQVKAVSLESGLYSSVKPKPPVPLKKTAVKPAALEDITNKAPKAMLSNCKNAADEHPKCVLLKVSENDTSHYRGSPRHPLVEGRLLSAMKPIDL", "length": 890 }, "evidence": [ { "id": "A0A4X1UL79", "url": "https://omabrowser.org/oma/group/A0A4X1UL79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AAA9SX79-1", "protein_name": "Rho GTPase-activating protein 11A", "gene_name": "ARHGAP11A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSGMWDQRLVRLAVVQQLRAAYGIKVKGGRAQCDRRRQETATTEIVGKIFGVPLNALPQSIVPEYGHIPSFLVDACTSLEEHVHTEGLFRKSGSVIRLKALKNKLDHGERCLSSAPPCDTAGLLKQFFRELPEPILPADLHEALFKAQQLKTEEKNKATLLLSCLMADHTIDILRYFFNFLRKVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSANTEKKLRLQAAVVQTFIDYASDIGHVPDFILEKIPAMLGIDGLCATPSLEGFEEGDYETPGDYKRKRRQSVGDFVSGALNKFKSNRTPSITPQQERIAQLSVSPTILTPNAKRKLPVDSHGLSSKKRKSIKHNFNFELLPSNLFSSSSTPISVHCDTSPEGSSQSSFSPVAISGNHLISTNVLRRSKRLASKKVCRVESGKAGCFSPKISRKEKVRRSLRLKFNLGKNSKDGNECSGVNRSENVGRRLANQQSLKNRIDSVKTGLLFSPDTDERLTQKGSKKISKSEENLLTPEQLSGTNYRISWIGPSNSDFQEVDGNEASPIDGTLEVENSSLEPDMMVEKSPVSSSGLTPPNVHSQHSNNTTGSSLSGDENNLTTETVVKIQKAFSESGSNLHALINHKQSSLTNVEKVKFNETSSTKGSPEKNLLKTNLTVIESNGHHTSNNEDSFSERDFSLHQPQKSDREATVKCYSTQLKIQLENNIHFNIPTDYLSKQELPSDEHVRKQESPRDTLNTKLKENENLIEENLLKHTASREVVASTSSLGQSTCSSTNLSKPSPGGIIKQQSPVETRDETVSECLQMTKHGRVSDHIQWFNNLSLNEPNRTKVKSPLKFQRTPVRQSVRRISSLLEYGGQPPRRKLASLGDTASPLVKSVSCESALPSCVESMTKDSSHPCTRSGPKEQKSSSCKQSNIDMISKSSMEVTSTSFLQMKRHPNSVNASLGSTRVCKQEVISNSQIKVPLDDLTNHDIVKSIVSNDKVFPPGVNSRVLRKPSEKERIWYKGSPKNPIGKLQLLPTSKPVDL", "length": 1023 }, "evidence": [ { "id": "A0A4X1UL79", "url": "https://omabrowser.org/oma/group/A0A4X1UL79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3Z951-1", "protein_name": "Rho GTPase-activating protein 11A", "gene_name": "Arhgap11a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWDQRLVRLALLQQLRAVYGIKVKGGRGQCDRRRQETAATEIRGKIFGVPFNSLPHSVVPEYGHIPSFLVDACTSLKEHIHTEGLFRKSGSVIRLKALKSKLDHGEACLSSALPCDVAGLLKQFFRELPEPVLPADLHEALFKAQQLGAEERNKATLLLSCLMADPTVDVLRYFFNFLKSVSLRASENKMDSSNLAVIFAPNLLQTSEGHEKMSANTEKKLRLQAAVVQTLIDYASDIGRVPDFILEKIPAMLGIDGLCTTPSLEGFEGDYETPGECKRKRRQSVGDFVNGALNKLKSSRTPSITPQQDRTAQAPVSPLILTPSVKRKLPGETSHTLSSKKRKSIKNNLNFELLPSHLFSSNSTPVSVHFDTSPEGSSQSSLSPIAMSGNHLTSTDLRRSKRIASKKVYRVESGKAGCFSPKVTRKEKVRRSLRLKFSLRKNRDSNGCSVINRHENVGRRLANQQNLKNRIESVKTGLLFSPDIDERLLKKGSEKISKSEEHLLTPDQLDGTGYRMSWTEPSNSSFQDMSANGTSPIMQNLEVKSFSLESNITVEKSPVVSCELRPSTFHSQPNSSVLGRSLSGDEGNLAFETLQKIQKAFSESGSDLHTAVNHEQSSVTNVGEEGESRDVSESKGHDGSYTGQDENYASERNLSPSQSPELAREASEECHSTQMKVGCESLHSETPRADLLQQAFPSEEPTKETQSPGSQLDTTPSQGDENVVEENSGACEAPEENDAQSLKQSTCSVTVISKPRAQRLARQRSLVEKCDSAVPGGPQMTEHGKVSDHIQWFNKLSLNEPNRGKVKSPLKFQRTPVRQSVRRINSLLEYGRQPVRQKLAVFGDAASPLVKSVSCDSALPSCVQSTSKGPCVPHTKPGLEAQKCTSCDKSSVELTSKSFTKMKRHPDPLNASLATTRLCKQENKSDVQIKFPLDDLTNHDRLKFVVNNNVDFPPGIKNRVLKKPLEKERVWYKGSPKNPIGKTQLLPTSKPVDL", "length": 994 }, "evidence": [ { "id": "A0A4X1UL79", "url": "https://omabrowser.org/oma/group/A0A4X1UL79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6P4F7-1", "protein_name": "Rho GTPase-activating protein 11A", "gene_name": "ARHGAP11A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWDQRLVRLALLQHLRAFYGIKVKGVRGQCDRRRHETAATEIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGRVPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPGEYKRKRRQSVGDFVSGALNKFKPNRTPSITPQEERIAQLSESPVILTPNAKRTLPVDSSHGFSSKKRKSIKHNFNFELLPSNLFNSSSTPVSVHIDTSSEGSSQSSLSPVLIGGNHLITAGVPRRSKRIAGKKVCRVESGKAGCFSPKISHKEKVRRSLRLKFNLGKNGREVNGCSGVNRYESVGWRLANQQSLKNRIESVKTGLLFSPDVDEKLPKKGSEKISKSEETLLTPERLVGTNYRMSWTGPNNSSFQEVDANEASSMVENLEVENSLEPDIMVEKSPATSCELTPSNLNNKHNSNITSSPLSGDENNMTKETLVKVQKAFSESGSNLHALMNQRQSSVTNVGKVKLTEPSYLEDSPEENLFETNDLTIVESKEKYEHHTGKGEKCFSERDFSPLQTQTFNRETTIKCYSTQMKMEHEKDIHSNMPKDYLSKQEFSSDEEIKKQQSPKDKLNNKLKENENMMEGNLPKCAAHSKDEARSSFSQQSTCVVTNLSKPRPMRIAKQQSLETCEKTVSESSQMTEHRKVSDHIQWFNKLSLNEPNRIKVKSPLKFQRTPVRQSVRRINSLLEYSRQPTGHKLASLGDTASPLVKSVSCDGALSSCIESASKDSSVSCIKSGPKEQKSMSCEESNIGAISKSSMELPSKSFLKMRKHPDSVNASLRSTTVYKQKILSDGQVKVPLDDLTNHDIVKPVVNNNMGISSGINNRVLRRPSERGRAWYKGSPKHPIGKTQLLPTSKPVDL", 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"glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.", "journal": "Nature", "date": "2018", "authors": "Kummer Eva, Leibundgut Marc, Rackham Oliver, Lee Richard G, Boehringer Daniel, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULI6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULI6" } ], "reference": [ { "type": "PubMed", "id": "30089917", "url": "https://glygen.org/publication/PubMed/30089917" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULI6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULI6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.", "journal": "EMBO J.", "date": "2020", "authors": "Kummer E, Ban N", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULI6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULI6" } ], "reference": [ { "type": "PubMed", "id": "32602580", "url": "https://glygen.org/publication/PubMed/32602580" } ] }, { "title": "Structural basis of translation termination, rescue, and recycling in mammalian mitochondria.", 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"MVRHQPLQYYEPQLCLSCLTGIYGCRWKRYQRSHDDTTPWERLWFLLLTLTFGLTLTWLYFWWEVHNDYDEFNWYLYNRLGYWSDWSVPILMATAAAFTYVAGLQVLALCHIAVGQQMNLHWLHKIGLVAILVATVVAMSAVAQLWEDEWEVLLISLQGTAPFLHVGALAAVTALSWIVAGQFARAERSSSQVAILSTFLAVVFALYLAPLTISSPCIMEKKDLGPKPALIGHRGAPMLAPEHTLMSFRKALEQKLYGLQADVTISLDGVPFLMHDATLRRTTNVEELFPELARRPASMLNWTILQRLNAGQWFLKTDPFWTASSLSPSDQREAQNQSICSLTELLELAKGNATLLLNLRDPPREHPYRGSFVNVTLEALLRSGFPQHQVLWLPNRQRPLVRKVAPGFQQTSGSKEAAATLRKGHIQGLNLRYTQVSRQELRDYASWNLSVNLYTVNAPWLFSLLWCAGVPSVTSDNSHTLSQVPVPLWIMPPDEYCLMWVTADLISFALIVGIFVLQNYHLIRWRLGGIRSYNPEQIMLSAAVHRTSRDVSIMKEKLIFSEISDGMEVSDELSVCSDHSYDTYANSTTAPVAPRGSSSRTKTLTGRGGH", "length": 610, "header": "tr|A0A4X1UMM9-1|A0A4X1UMM9_PIG Isoform 1 of Glycerophosphodiester phosphodiesterase domain containing 5 OS=Sus scrofa OX=9823 GN=GDPD5 PE=3 SV=1 CANONICAL=A0A4X1UMM9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1ULX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMM9/entry#A0A4X1ULX3-1", "sequence": { "sequence": "MVRHQPLQYYEPQLCLSCLTGIYGCRWKRYQRSHDDTTPWERLWFLLLTLTFGLTLTWLYFWWEVHNDYDEFNWYLYNRLGYWSDWSVPILMATAAAFTYVAGLQVLALCHIAVGQQMNLHWLHKIGLVAILVATVVAMSAVAQLWEDEWEVLLISLQGTAPFLHVGALAAVTALSWIVAGQFARAERSSSQVAILSTFLAVVFALYLAPLTISSPCIMEKKDLGPKPALIGHRGAPMLAPEHTLMSFRKALEQKLYGLQADVTISLDGVPFLMHDATLRRTTNVEELFPELARRPASMLNWTILQRLNAGQWFLKTDPFWTASSLSPSDQREAQNQSICSLTELLELAKGNATLLLNLRDPPREHPYRGSFVNVTLEALLRSGFPQHQVLWLPNRQRPLVRKVAPGFQQTSGSKEAAATLRKGHIQGLNLRYTQVSRQELRDYASWNLSVNLYTVNAPWLFSLLWCAGVPSVTSDNSHTLSQVPVPLWIMPPDEYCLMWVTADLISFALIVGIFVLQKWRLGGIRSYNPEQIMLSAAVHRTSRDVSIMKEKLIFSEISDGMEVSDELSVCSDHSYDTYANSTTAPVAPRGSSSRTKTLTGRGGH", "length": 605, "header": "tr|A0A4X1ULX3-1|A0A4X1UMM9_PIG Computationally mapped isoform of Glycerophosphodiester phosphodiesterase domain containing 5 OS=Sus scrofa OX=9823 GN=GDPD5 PE=3 SV=1 CANONICAL=A0A4X1UMM9-1" }, "locus": { "chromosome": "9", "start_pos": 9694329, "end_pos": 9654750, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041266.1", "url": "https://www.ensembl.org/id/ENSSSCT00000041266.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038007.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038007.1" } ] } }, { "isoform_ac": "A0A4X1UMM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMM9/entry#A0A4X1UMM9-1", "sequence": { "sequence": "MVRHQPLQYYEPQLCLSCLTGIYGCRWKRYQRSHDDTTPWERLWFLLLTLTFGLTLTWLYFWWEVHNDYDEFNWYLYNRLGYWSDWSVPILMATAAAFTYVAGLQVLALCHIAVGQQMNLHWLHKIGLVAILVATVVAMSAVAQLWEDEWEVLLISLQGTAPFLHVGALAAVTALSWIVAGQFARAERSSSQVAILSTFLAVVFALYLAPLTISSPCIMEKKDLGPKPALIGHRGAPMLAPEHTLMSFRKALEQKLYGLQADVTISLDGVPFLMHDATLRRTTNVEELFPELARRPASMLNWTILQRLNAGQWFLKTDPFWTASSLSPSDQREAQNQSICSLTELLELAKGNATLLLNLRDPPREHPYRGSFVNVTLEALLRSGFPQHQVLWLPNRQRPLVRKVAPGFQQTSGSKEAAATLRKGHIQGLNLRYTQVSRQELRDYASWNLSVNLYTVNAPWLFSLLWCAGVPSVTSDNSHTLSQVPVPLWIMPPDEYCLMWVTADLISFALIVGIFVLQNYHLIRWRLGGIRSYNPEQIMLSAAVHRTSRDVSIMKEKLIFSEISDGMEVSDELSVCSDHSYDTYANSTTAPVAPRGSSSRTKTLTGRGGH", "length": 610, "header": "tr|A0A4X1UMM9-1|A0A4X1UMM9_PIG Isoform 1 of Glycerophosphodiester phosphodiesterase domain containing 5 OS=Sus scrofa OX=9823 GN=GDPD5 PE=3 SV=1 CANONICAL=A0A4X1UMM9-1" }, "locus": { "chromosome": "9", "start_pos": 9694329, "end_pos": 9654750, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057302.2", "url": "https://www.ensembl.org/id/ENSSSCT00000057302.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032859.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032859.1" } ] } }, { "isoform_ac": "A0A4X1UMT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMM9/entry#A0A4X1UMT9-1", "sequence": { "sequence": "MVRHQPLQYYEPQLCLSCLTGIYGCRWKRYQRSHDDTTPGTAPFLHVGALAAVTALSWIVAGQFARAERSSSQVAILSTFLAVVFALYLAPLTISSPCIMEKKDLGPKPALIGHRGAPMLAPEHTLMSFRKALEQKLYGLQADVTISLDGVPFLMHDATLRRTTNVEELFPELARRPASMLNWTILQRLNAGQWFLKTDPFWTASSLSPSDQREAQNQSICSLTELLELAKGNATLLLNLRDPPREHPYRGSFVNVTLEALLRSGFPQHQVLWLPNRQRPLVRKVAPGFQQTSGSKEAAATLRKGHIQGLNLRYTQVSRQELRDYASWNLSVNLYTVNAPWLFSLLWCAGVPSVTSDNSHTLSQVPVPLWIMPPDEYCLMWVTADLISFALIVGIFVLQKWRLGGIRSYNPEQIMLSAAVHRTSRDVSIMKEKLIFSEISDGMEVSDELSVCSDHSYDTYANSTTAPVAPRGSSSRTKTLTGRGGH", "length": 486, "header": "tr|A0A4X1UMT9-1|A0A4X1UMT9_PIG Computationally mapped isoform of Glycerophosphodiester phosphodiesterase domain containing 5 OS=Sus scrofa OX=9823 GN=GDPD5 PE=3 SV=1 CANONICAL=A0A4X1UMM9-1" }, "locus": { "chromosome": "9", "start_pos": 9694329, "end_pos": 9654750, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016205.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016205.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015772.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015772.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1ULX3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1ULX3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627912", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627912", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UMM9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMM9" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UMM9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMM9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UMM9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMM9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UMM9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMM9" } ], "pmid": "" }, { "name": "positive regulation of cell differentiation", "id": "GO:0045597", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045597", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UMM9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMM9" } ], "pmid": "" }, { "name": "positive regulation of neuron differentiation", "id": "GO:0045666", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045666", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UMM9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMM9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phosphoric diester hydrolase activity", "id": "GO:0008081", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008081", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UMM9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMM9" } ], "pmid": "" }, { "name": "glycerophosphodiester phosphodiesterase activity", "id": "GO:0008889", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008889", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UMM9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMM9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" }, { "start_pos": 336, "end_pos": 338, "annotation": "n_glycosylation_sequon" }, { "start_pos": 352, "end_pos": 354, "annotation": "n_glycosylation_sequon" }, { "start_pos": 374, "end_pos": 376, "annotation": "n_glycosylation_sequon" }, { "start_pos": 448, "end_pos": 450, "annotation": "n_glycosylation_sequon" }, { "start_pos": 586, "end_pos": 588, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1UMM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMM9" }, { "id": "PS51704", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51704" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GP-PDE", "eco_id": "ECO_0000259", "start_pos": 228, "end_pos": 485, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 301, "end_pos": 303 }, { "start_pos": 336, "end_pos": 338 }, { "start_pos": 352, "end_pos": 354 }, { "start_pos": 374, "end_pos": 376 }, { "start_pos": 448, "end_pos": 450 }, { "start_pos": 586, "end_pos": 588 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UMQ6-1", "uniprot_ac": "A0A4X1UMQ6", "uniprot_id": "A0A4X1UMQ6_PIG", "mass": { "chemical_mass": 10275.0, "monoisotopic_mass": 10275.0 }, "refseq": { "ac": "XP_020931905", "name": "60S ribosomal protein L37a isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931905" }, "gene_names": [ { "name": "RPL37A", "type": "recommended", "evidence": [ { "id": "A0A4X1UMQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMQ6" } ] }, { "name": "RPL37A", "type": "synonym", "evidence": [ { "id": "XP_020931905", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931905" } ] } ], "protein_names": [ { "name": "Large ribosomal subunit protein eL43", "type": "recommended", "evidence": [ { "id": "A0A4X1UMQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMQ6/entry#names_and_taxonomy" } ] }, { "name": "60S ribosomal protein L37a isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020931905", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931905" } ] }, { "name": "60S ribosomal protein L37a", "type": "synonym", "evidence": [ { "id": "A0A4X1UMQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMQ6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UMQ6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMQ6#function" }, { "database": "UniProtKB", "id": "ARBA00034092", "url": "https://www.uniprot.org/uniprotkb/ARBA00034092#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UMQ6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMQ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RPL37A", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMQ6", "locus": { "chromosome": "15", "start_pos": 118706909, "end_pos": 118702325, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036716", "url": "https://www.ensembl.org/id/ENSSSCG00000036716" } ] } } ], "crossref": [ { "id": "A0A4X1UMQ6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1UMQ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "110257174", "url": "https://www.ncbi.nlm.nih.gov/gene/110257174", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002674", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002674", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GPRYGRK", "url": "https://omabrowser.org/oma/group/GPRYGRK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48188", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48188", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48188:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48188:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01780", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01780", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020931905", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931905", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1UMQ6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UMQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ", "length": 92, "header": "tr|A0A4X1UMQ6-1|A0A4X1UMQ6_PIG Isoform 1 of Large ribosomal subunit protein eL43 OS=Sus scrofa OX=9823 GN=RPL37A PE=3 SV=1 CANONICAL=A0A4X1UMQ6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UMQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMQ6/entry#A0A4X1UMQ6-1", "sequence": { "sequence": "MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ", "length": 92, "header": "tr|A0A4X1UMQ6-1|A0A4X1UMQ6_PIG Isoform 1 of Large ribosomal subunit protein eL43 OS=Sus scrofa OX=9823 GN=RPL37A PE=3 SV=1 CANONICAL=A0A4X1UMQ6-1" }, "locus": { "chromosome": "15", "start_pos": 118704910, "end_pos": 118702356, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049415.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049415.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045176.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045176.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UMQ6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMQ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3H3Z5-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "Rpl37a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ", "length": 92 }, "evidence": [ { "id": "A0A4X1UMQ6", "url": "https://omabrowser.org/oma/group/A0A4X1UMQ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P0CX25-1", "protein_name": "Large ribosomal subunit protein eL43A", "gene_name": "RPL43A", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRSTIRRLREMVEA", "length": 92 }, "evidence": [ { "id": "A0A4X1UMQ6", "url": "https://omabrowser.org/oma/group/A0A4X1UMQ6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX26-1", "protein_name": "Large ribosomal subunit protein eL43B", "gene_name": "RPL43B", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRSTIRRLREMVEA", "length": 92 }, "evidence": [ { "id": "A0A4X1UMQ6", "url": "https://omabrowser.org/oma/group/A0A4X1UMQ6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32046-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ", "length": 92 }, "evidence": [ { "id": "A0A4X1UMQ6", "url": "https://omabrowser.org/oma/group/A0A4X1UMQ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ", "length": 92 }, "evidence": [ { "id": "A0A4X1UMQ6", "url": "https://omabrowser.org/oma/group/A0A4X1UMQ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P61514-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "Rpl37a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ", "length": 92 }, "evidence": [ { "id": "A0A4X1UMQ6", "url": "https://omabrowser.org/oma/group/A0A4X1UMQ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3MIC0-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ", "length": 92 }, "evidence": [ { "id": "A0A4X1UMQ6", "url": "https://omabrowser.org/oma/group/A0A4X1UMQ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54UG4-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "rpl37A", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGCRKVLAGGAWTMSTAAGATVRSTIRRLRELNN", "length": 91 }, "evidence": [ { "id": "A0A4X1UMQ6", "url": "https://omabrowser.org/oma/group/A0A4X1UMQ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9SRK6-1", "protein_name": "Large ribosomal subunit protein eL43z", "gene_name": "RPL37AB", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES", "length": 92 }, "evidence": [ { "id": "A0A4X1UMQ6", "url": "https://omabrowser.org/oma/group/A0A4X1UMQ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VMU4-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RpL37A", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAKRTKKVGIVGKYGTRYGASLRKMVKKMEITQHSKYTCSFCGKDSMKRAVVGIWSCKRCKRTVAGGAWVYSTTAAASVRSAVRRLRETKEQ", "length": 92 }, "evidence": [ { "id": "A0A4X1UMQ6", "url": "https://omabrowser.org/oma/group/A0A4X1UMQ6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { 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"url": "https://www.uniprot.org/uniprotkb/A0A4X1UMY8#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UMY8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMY8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF654", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMY8", "locus": { "chromosome": "13", "start_pos": 167807263, "end_pos": 167895736, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000036885", "url": "https://www.ensembl.org/id/ENSSSCG00000036885" } ] } } ], "crossref": [ { "id": "A0A4X1UMY8", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1UMY8", "database": "AlphaFoldDB", "categories": [] }, { "id": "110256452", "url": "https://www.ncbi.nlm.nih.gov/gene/110256452", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057986", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057986", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15507", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15507", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15507:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15507:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25420", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25420", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25580", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25580", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020926399", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926399", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1UMY8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UMY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1SSX6-1", "uniprot_ac": "A0A4X1SSX6", "uniprot_id": "A0A4X1SSX6_PIG", "mass": { "chemical_mass": 57865.0, "monoisotopic_mass": 57865.0 }, "refseq": {}, "gene_names": [ { "name": "ANKS1B", "type": "recommended", "evidence": [ { "id": "A0A4X1SSX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6" } ] } ], "protein_names": [ { "name": "Ankyrin repeat and sterile alpha motif domain containing 1B", "type": "synonym", "evidence": [ { "id": "A0A4X1SSX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Isoform 2 may participate in the regulation of nucleoplasmic coilin protein interactions in neuronal and transformed cells.", "evidence": [ { "database": "UniProtKB", "id": "F1SQT8", "url": "https://www.uniprot.org/uniprotkb/F1SQT8#function" }, { "database": "UniProtKB", "id": "ARBA00054696", "url": "https://www.uniprot.org/uniprotkb/ARBA00054696#function" } ] }, { "annotation": "Plays a central role during spermatogenesis by repressing transposable elements and preventing their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and governs the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in the regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation.", "evidence": [ { "database": "UniProtKB", "id": "F1SQT6", "url": "https://www.uniprot.org/uniprotkb/F1SQT6#function" }, { "database": "UniProtKB", "id": "ARBA00025297", "url": "https://www.uniprot.org/uniprotkb/ARBA00025297#function" }, { "database": "UniProtKB", "id": "F1SQT8", "url": "https://www.uniprot.org/uniprotkb/F1SQT8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SSX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANKS1B", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6", "locus": { "chromosome": "5", "start_pos": 85148976, "end_pos": 84080669, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022083", "url": "https://www.ensembl.org/id/ENSSSCG00000022083" } ] } } ], "crossref": [ { "id": "A0A4X1SSX6", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1SSX6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01274", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01274", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09499", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09499", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09500", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09500", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513089", "url": "https://www.ncbi.nlm.nih.gov/gene/100513089", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033635", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033635", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041880", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041880", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041882", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041882", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513089", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513089", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SQT8", "url": "https://www.orthodb.org/?gene=F1SQT8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24174", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24174", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24174:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24174:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00640", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00640", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ABN9", "url": "https://www.uniprot.org/uniprotkb/A0A287ABN9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABN9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SSX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SSX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SSY1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SSY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSY1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1STE3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1STE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1STE3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQT6", "url": "https://www.uniprot.org/uniprotkb/F1SQT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQT6-1", "url": "https://www.uniprot.org/uniprotkb/F1SQT6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQT7", "url": "https://www.uniprot.org/uniprotkb/F1SQT7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQT7-1", "url": "https://www.uniprot.org/uniprotkb/F1SQT7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQT8", "url": "https://www.uniprot.org/uniprotkb/F1SQT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQT8-1", "url": "https://www.uniprot.org/uniprotkb/F1SQT8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LH41", "url": "https://www.uniprot.org/uniprotkb/I3LH41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LH41-1", "url": "https://www.uniprot.org/uniprotkb/I3LH41-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMWQCHLSAQDYRYYPVDGYSLLKRFPLHPLTGPRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKMRPIGHDGYHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIWEVELINVLKINLIGHRKRILASLGDRLHDDPPQKPPRSITLREPSGNHTPPQLSPSLSQSTYTTGGSLDVPHIIMQGDARRRRNENYFDDIPRSKLERQMAQSSVCEIWTNQNAGFPFSAIHQVHNTGDWGEPSITLRPPNEATASTPVQYWQHHPEKLIFQSCDYKAFYLGSMLIKELRGTESTQDACAKMRANCQKSTEQMKKVPTIILSVSYKGVKFIDATNKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVFTAFDVNLAYEIILTLGQAFEVAYQLALQARKGGHSSTLPESFENKPSKPIPKPRVSIRKSVQIDPSEQKTLANLPWIVEPGQEAKRGINTKYETTIF", "length": 510, "header": "tr|A0A4X1SSX6-1|A0A4X1SSX6_PIG Isoform 1 of Ankyrin repeat and sterile alpha motif domain containing 1B OS=Sus scrofa OX=9823 GN=ANKS1B PE=4 SV=1 CANONICAL=A0A4X1SSX6-1" }, "isoforms": [ { "isoform_ac": "A0A287ABN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6/entry#A0A287ABN9-1", "sequence": { "sequence": "MQGDARRRRNENYFDDIPRSKLERQMAQTGDWGEPSITLRPPNEATASTPVQYWQHHPEKLIFQSCDYKAFYLGSMLIKELRGTESTQDACAKMRANCQKSTEQMKKVPTIILSVSYKGVKFIDATNKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVFTAFDVNLAYEIILTLGQAFEVAYQLALQARKGGHSSTLPESFENKPSKPIPKPRVSIRKSVQIDPSEQKTLANLPWIVEPGQEAKRGINTKYETTIF", "length": 266, "header": "tr|A0A287ABN9-1|A0A4X1SSX6_PIG Computationally mapped isoform of Ankyrin repeat and sterile alpha motif domain containing 1B OS=Sus scrofa OX=9823 GN=ANKS1B PE=4 SV=3 CANONICAL=A0A4X1SSX6-1" }, "locus": { "chromosome": "5", "start_pos": 85147212, "end_pos": 85068398, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038082.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038082.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041304.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041304.3" } ] } }, { "isoform_ac": "A0A4X1SSX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6/entry#A0A4X1SSX6-1", "sequence": { "sequence": "MMWQCHLSAQDYRYYPVDGYSLLKRFPLHPLTGPRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKMRPIGHDGYHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIWEVELINVLKINLIGHRKRILASLGDRLHDDPPQKPPRSITLREPSGNHTPPQLSPSLSQSTYTTGGSLDVPHIIMQGDARRRRNENYFDDIPRSKLERQMAQSSVCEIWTNQNAGFPFSAIHQVHNTGDWGEPSITLRPPNEATASTPVQYWQHHPEKLIFQSCDYKAFYLGSMLIKELRGTESTQDACAKMRANCQKSTEQMKKVPTIILSVSYKGVKFIDATNKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVFTAFDVNLAYEIILTLGQAFEVAYQLALQARKGGHSSTLPESFENKPSKPIPKPRVSIRKSVQIDPSEQKTLANLPWIVEPGQEAKRGINTKYETTIF", "length": 510, "header": "tr|A0A4X1SSX6-1|A0A4X1SSX6_PIG Isoform 1 of Ankyrin repeat and sterile alpha motif domain containing 1B OS=Sus scrofa OX=9823 GN=ANKS1B PE=4 SV=1 CANONICAL=A0A4X1SSX6-1" }, "locus": { "chromosome": "5", "start_pos": 85147212, "end_pos": 84742753, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047551.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047551.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039603.3", "url": "https://www.ensembl.org/id/ENSSSCP00000039603.3" } ] } }, { "isoform_ac": "A0A4X1SSY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6/entry#A0A4X1SSY1-1", "sequence": { "sequence": "MMWQCHLSAQDYRYYPVDGYSLLKRFPLHPLTGPRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKMRPIGHDGYHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIWEVELINVLKINLIGHRKRILASLGDRLHDDPPQKPPRSITLRSSVCEIWTNQNAGFPFSAIHQVHNTGDWGEPSITLRPPNEATASTPVQYWQHHPEKLIFQSCDYKAFYLGSMLIKELRGTESTQDACAKMRANCQKSTEQMKKVPTIILSVSYKGVKFIDATNKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVFTAFDVNLAYEIILTLGQAFEVAYQLALQARKGGHSSTLPESFENKPSKPIPKPRVSIRKSVQIDPSEQKTLANLPWIVEPGQEAKRGINTKYETTIF", "length": 450, "header": "tr|A0A4X1SSY1-1|A0A4X1SSY1_PIG Computationally mapped isoform of Ankyrin repeat and sterile alpha motif domain containing 1B OS=Sus scrofa OX=9823 GN=ANKS1B PE=4 SV=1 CANONICAL=A0A4X1SSX6-1" }, "locus": { "chromosome": "5", "start_pos": 85147212, "end_pos": 84742753, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081828.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081828.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073863.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073863.2" } ] } }, { "isoform_ac": "A0A4X1STE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6/entry#A0A4X1STE3-1", "sequence": { "sequence": "MGPRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKMRPIGHDGYHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIWEVELINVLKINLIGHRKRILASLGDRLHDDPPQKPPRSITLRTGDWGEPSITLRPPNEATASTPVQYWQHHPEKLIFQSCDYKAFYLGSMLIKELRGTESTQDACAKMRANCQKSTEQMKKVPTIILSVSYKGVKFIDATNKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVFTAFDVNLAYEIILTLGQAFEVAYQLALQARKGGHSSTLPESFENKPSKPIPKPRVSIRKSVIDPSEQKTLANLPWIVEPGQEAKRGINTKYETTIF", "length": 394, "header": "tr|A0A4X1STE3-1|A0A4X1STE3_PIG Computationally mapped isoform of Ankyrin repeat and sterile alpha motif domain containing 1B OS=Sus scrofa OX=9823 GN=ANKS1B PE=4 SV=1 CANONICAL=A0A4X1SSX6-1" }, "locus": { "chromosome": "5", "start_pos": 85147212, "end_pos": 84742273, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028266.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028266.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023439.4", "url": "https://www.ensembl.org/id/ENSSSCP00000023439.4" } ] } }, { "isoform_ac": "F1SQT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6/entry#F1SQT6-1", "sequence": { "sequence": "MGKDQELLEAARTGNVALVEKLLSGRKGGILGGGSGPLPLSNLLSIWRGPNVNCTDSSGYTALHHAALNGHKDIVLKLLQYEASTNVADNKGYFPIHLAAWKGDVEIVKILIHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMIISAHPNLMSCNTRKHTPLHLAARNGHKAVVEVLLEAGMDVSCQTEKGSALHEAALFGKVDVVRVLLETGIDANIKDSLGRTVLDILKEHPSQKSLQIATLLQEYLEGVGRAAVLEEHIQEDTTQETHISSPVESPSQKTKSETVTGELSKLLDEIKLCQEKDYSFEDLCHTISDHYLDNLSKISEEELGKNGSQSVRTSSTINLSPGEVEEDDDENTCGPSGLWEALTPCNGCRNLGFPILAQESYPKKRNYTMEIIPSASLDTFPSENENFLCDLMDTAVTKKPCSLEIARAPSPRTDNASEVAITAPGTSNHRNSSTGPTPDCSPPSPDTALKNIVKVIRPQPKQRTSIVSSLDFHRMNHNQEYFEISTSAGCTSFTSSPPVSPSASSVATSEVKNEGAGHTDGLSQQQDNDPPKEYDPGQFAGLLHGSSPACESPENPFHLYGKRDDHEEGKDEVSLANSPLPFKQTPIENNSEPLVKKIKPKVVSRTIFHKKSNQLENHTIVGTRTTRSGSRNGDQWIVNTGGFVERACTLGRIRSLPKTLIDMHLSKSVSKSDSDLIAYPSKEKTPRVNWTESSTAEHCSKGNSERTPSFTSEWEEIDKIMSSIDVGINSELEEINGENTRPRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKMRPIGHDGYHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIWEVELINQSSVCEIWTNQNAGFPFSAIHQVHNTGDWGEPSITLRPPNEATASTPVQYWQHHPEKLIFQSCDYKAFYLGSMLIKELRGTESTQDACAKMRANCQKSTEQMKKVPTIILSVSYKGVKFIDATNKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVFTAFDVNLAYEIILTLGQAFEVAYQLALQARKGGHSSTLPESFENKPSKPIPKPRVSIRKSVIDPSEQKTLANLPWIVEPGQEAKRGINTKYETTIF", "length": 1187, "header": "tr|F1SQT6-1|A0A4X1SSX6_PIG Computationally mapped isoform of Ankyrin repeat and sterile alpha motif domain containing 1B OS=Sus scrofa OX=9823 GN=ANKS1B PE=4 SV=5 CANONICAL=A0A4X1SSX6-1" }, "locus": { "chromosome": "5", "start_pos": 85147212, "end_pos": 84080919, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000966.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000966.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000946.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000946.5" } ] } }, { "isoform_ac": "F1SQT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6/entry#F1SQT7-1", "sequence": { "sequence": "MQGDARRRRNENYFDDIPRSKLERQMAQQSSVCEIWTNQNAGFPFSAIHQVHNTGDWGEPSITLRPPNEATASTPVQYWQHHPEKLIFQSCDYKAFYLGSMLIKELRGTESTQDACAKMRANCQKSTEQMKKVPTIILSVSYKGVKFIDATNKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVFTAFDVNLAYEIILTLGQAFEVAYQLALQARKGGHSSTLPESFENKPSKPIPKPRVSIRKSVQIDPSEQKTLANLPWIVEPGQEAKRGINTKYETTIF", "length": 291, "header": "tr|F1SQT7-1|A0A4X1SSX6_PIG Computationally mapped isoform of Ankyrin repeat and sterile alpha motif domain containing 1B OS=Sus scrofa OX=9823 GN=ANKS1B PE=4 SV=4 CANONICAL=A0A4X1SSX6-1" }, "locus": { "chromosome": "5", "start_pos": 85147212, "end_pos": 85068398, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000965.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000965.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000945.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000945.4" } ] } }, { "isoform_ac": "F1SQT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6/entry#F1SQT8-1", "sequence": { "sequence": "MGKDQELLEAARTGNVALVEKLLSGRKGGILGGGSGPLPLSNLLSIWRGPNVNCTDSSGYTALHHAALNGHKDIVLKLLQYEASTNVADNKGYFPIHLAAWKGDVEIVKILIHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMIISAHPNLMSCNTRKHTPLHLAARNGHKAVVEVLLEAGMDVSCQTEKGSALHEAALFGKVDVVRVLLETGIDANIKDSLGRTVLDILKEHPSQKSLQIATLLQEYLEGVGRAAVLEEHIQEDTTQETHISSPVESPSQKTKSETVTGELSKLLDEIKLCQEKDYSFEDLCHTISDHYLDNLSKISEEELGKNGSQSVRTSSTINLSPGEVEEDDDENTCGPSGLWEALTPCNGCRNLGFPILAQESYPKKRNYTMEIIPSASLDTFPSENENFLCDLMDTAVTKKPCSLEIARAPSPRTDNASEVAITAPGTSNHRNSSTGPTPDCSPPSPDTALKNIVKVIRPQPKQRTSIVSSLDFHRMNHNQEYFEISTSAGCTSFTSSPPVSPSASSVATSEVKNEGAGHTDGLSQQQDNDPPKEYDPGQFAGLLHGSSPACESPENPFHLYGKRDDHEEGKDEVSLANSPLPFKQTPIENNSEPLVKKIKPKVVSRTIFHKKSNQLENHTIVGTRTTRSGSRNGDQWIVNTGGFVERACTLGRIRSLPKTLIDMHLSKSVSKSDSDLIAYPSKEKTPRVNWTESSTAEHCSKGNSERTPSFTSEWEEIDKIMSSIDVGINSELEEINGENTRPRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKMRPIGHDGYHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIWEVELINVLKINLIGHRKRILASLGDRLHDDPPQKPPRSITLREPSGNHTPPQLSPSLSQSTYTTGGSLDVPHIIMQGDARRRRNENYFDDIPRSKLERQMAQQSSVCEIWTNQNAGFPFSAIHQVHNTGDWGEPSITLRPPNEATASTPVQYWQHHPEKLIFQSCDYKAFYLGSMLIKELRGTESTQDACAKMRANCQKSTEQMKKVPTIILSVSYKGVKFIDATNKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVFTAFDVNLAYEIILTLGQAFEVAYQLALQARKGGHSSTLPESFENKPSKPIPKPRVSIRKSVQIDPSEQKTLANLPWIVEPGQEAKRGINTKYETTIF", "length": 1284, "header": "tr|F1SQT8-1|F1SQT8_PIG Computationally mapped isoform of Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Sus scrofa OX=9823 GN=ANKS1B PE=4 SV=5 CANONICAL=A0A4X1SSX6-1" }, "locus": { "chromosome": "5", "start_pos": 85147212, "end_pos": 84080919, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000964.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000964.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000944.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000944.5" } ] } }, { "isoform_ac": "I3LH41-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6/entry#I3LH41-1", "sequence": { "sequence": "MLIKELRGTESTQDACAKMRKSTEQMKKVPTIILSVSYKGVKFIDATNKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVFTAFDVNLAYEIILTLGQAFEVAYQLALQARKGGHSSTLPESFENKPSKPIPKPRVSIRKSVQIDPSEQKTLANLPWIVEPGQEAKRGINTKYETTIF", "length": 187, "header": "tr|I3LH41-1|A0A4X1SSX6_PIG Computationally mapped isoform of Ankyrin repeat and sterile alpha motif domain containing 1B OS=Sus scrofa OX=9823 GN=ANKS1B PE=4 SV=4 CANONICAL=A0A4X1SSX6-1" }, "locus": { "chromosome": "5", "start_pos": 85147212, "end_pos": 85092729, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029451.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029451.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023386.4", "url": "https://www.ensembl.org/id/ENSSSCP00000023386.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQT6", "url": "https://www.uniprot.org/uniprotkb/F1SQT6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513089", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513089", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SSX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6" } ], "pmid": "" }, { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SSX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SSX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6" } ], "pmid": "" }, { "name": "postsynaptic density", "id": "GO:0014069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014069", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SSX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6" } ], "pmid": "" }, { "name": "dendritic spine", "id": "GO:0043197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043197", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SSX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6" } ], "pmid": "" }, { "name": "presynaptic cytosol", "id": "GO:0099523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099523", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SSX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ephrin receptor binding", "id": "GO:0046875", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046875", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SSX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "ephrin receptor signaling pathway", "id": "GO:0048013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048013", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SSX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6" } ], "pmid": "" }, { "name": "regulation of synaptic plasticity by receptor localization to synapse", "id": "GO:1900383", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900383", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SSX6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 193, "end_pos": 195, "annotation": "n_glycosylation_sequon" }, { "start_pos": 382, "end_pos": 384, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1SSX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SSX6" }, { "id": "PS01179", "database": "PROSITE", "url": "https://prosite.expasy.org/PS01179" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PID", "eco_id": "ECO_0000259", "start_pos": 309, "end_pos": 442, "start_aa": "Ser", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A4X1SSX6", "database": "UniProtKB", "url": 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"https://www.ensembl.org/id/ENSSSCP00000061738.1" } ] } }, { "isoform_ac": "I3L5F6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T0E3/entry#I3L5F6-1", "sequence": { "sequence": 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014014", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014014", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24031", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24031", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00270", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00270", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00271", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00271", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FDP4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FQC1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FQC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQC1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCS1-1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLAPFWMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLTKGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKASDSFVVKSQHSGNAQVAQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLNLSQVRFWSWMKLYDGLLSQGYSDFINRIHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDEVHAKDNTRPGANSPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRTLGGGNYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQLFRTF", "length": 741, "header": "tr|F1SCS1-1|F1SCS1_PIG Isoform 1 of ATP-dependent RNA helicase OS=Sus scrofa OX=9823 GN=DDX1 PE=1 SV=4 CANONICAL=F1SCS1-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FDP4-1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1/entry#A0A8W4FDP4-1", "sequence": { "sequence": "FLEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLTKGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKASDSFVVKSQHSGNAQVAQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLNLSQVRFVLDEADGLLSQGYSDFINRIHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDEVHAKDNTRPGANSPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRTLGGGNYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQLFRTF", "length": 736, "header": "tr|A0A8W4FDP4-1|F1SCS1_PIG Computationally mapped isoform of ATP-dependent RNA helicase OS=Sus scrofa OX=9823 GN=DDX1 PE=1 SV=1 CANONICAL=F1SCS1-1" }, "locus": { "chromosome": "3", "start_pos": 121853727, "end_pos": 121821986, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092207.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092207.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076979.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076979.1" } ] } }, { "isoform_ac": "A0A8W4FQC1-1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1/entry#A0A8W4FQC1-1", "sequence": { "sequence": "MKQPRCWSRTFSPALTDSSLILGRKHSLVTKCQQWLDALYVVVCNLPISLQEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLTKGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKASDSFVVKSQHSGNAQVAQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLNLSQVRFWSWMKLYDGLLSQGYSDFINRIHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDEVHAKDNTRPGANSPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRTLGGGNYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQLFRTF", "length": 787, "header": "tr|A0A8W4FQC1-1|F1SCS1_PIG Computationally mapped isoform of ATP-dependent RNA helicase OS=Sus scrofa OX=9823 GN=DDX1 PE=1 SV=1 CANONICAL=F1SCS1-1" }, "locus": { "chromosome": "3", "start_pos": 121854119, "end_pos": 121821986, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099395.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099395.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080562.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080562.1" } ] } }, { "isoform_ac": "F1SCS1-1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1/entry#F1SCS1-1", "sequence": { "sequence": "MLAPFWMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLTKGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKASDSFVVKSQHSGNAQVAQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLNLSQVRFWSWMKLYDGLLSQGYSDFINRIHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDEVHAKDNTRPGANSPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRTLGGGNYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQLFRTF", "length": 741, "header": "tr|F1SCS1-1|F1SCS1_PIG Isoform 1 of ATP-dependent RNA helicase OS=Sus scrofa OX=9823 GN=DDX1 PE=1 SV=4 CANONICAL=F1SCS1-1" }, "locus": { "chromosome": "3", "start_pos": 121853958, "end_pos": 121821986, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009430.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009430.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009188.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009188.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FQC1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQC1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "protein localization to cytoplasmic stress granule", "id": "GO:1903608", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903608", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "defense response to virus", "id": "GO:0051607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051607", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "positive regulation of canonical NF-kappaB signal transduction", "id": "GO:0043123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043123", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "double-strand break repair", "id": "GO:0006302", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006302", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "tRNA splicing, via endonucleolytic cleavage and ligation", "id": "GO:0006388", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006388", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "positive regulation of myeloid dendritic cell cytokine production", "id": "GO:0002735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002735", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "tRNA processing", "id": "GO:0008033", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008033", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 10, "go_terms": [ { "name": "DNA/RNA helicase activity", "id": "GO:0033677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033677", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "double-stranded RNA binding", "id": "GO:0003725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003725", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "exonuclease activity", "id": "GO:0004527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004527", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "poly(A) binding", "id": "GO:0008143", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008143", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "RNA helicase activity", "id": "GO:0003724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003724", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "tRNA-splicing ligase complex", "id": "GO:0072669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072669", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "cleavage body", "id": "GO:0071920", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071920", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SCS1", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 360, "end_pos": 362, "annotation": "n_glycosylation_sequon" }, { "start_pos": 590, "end_pos": 592, "annotation": "n_glycosylation_sequon" }, { "start_pos": 668, "end_pos": 670, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13065", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13065" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCS1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 741, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCS1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCS1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 70, "end_pos": 247, "start_aa": "Asp", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SCS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" }, { "id": "PS51192", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51192" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase ATP-binding", "eco_id": "ECO_0000259", "start_pos": 255, "end_pos": 429, "start_aa": "Phe", "end_aa": "Trp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SCS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCS1" }, { "id": "PS51194", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51194" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase C-terminal", "eco_id": "ECO_0000259", "start_pos": 494, "end_pos": 682, "start_aa": "Lys", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 360, "end_pos": 362 }, { "start_pos": 590, "end_pos": 592 }, { "start_pos": 668, "end_pos": 670 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SAI8-1", "uniprot_ac": "F1SAI8", "uniprot_id": "F1SAI8_PIG", "mass": { "chemical_mass": 111496.0, "monoisotopic_mass": 111496.0 }, "refseq": { "ac": "XP_005667473", "name": "hypoxia up-regulated protein 1 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667473" }, "gene_names": [ { "name": "HYOU1", "type": "recommended", "evidence": [ { "id": "F1SAI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ] }, { "name": "HYOU1", "type": "synonym", "evidence": [ { "id": "XP_005667473", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667473" } ] } ], "protein_names": [ { "name": "Hypoxia up-regulated protein 1", "type": "recommended", "evidence": [ { "id": "F1SAI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAI8/entry#names_and_taxonomy" } ] }, { "name": "hypoxia up-regulated protein 1 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_005667473", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667473" } ] } ], "function": [ { "annotation": "Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. Promotes HSPA5/BiP-mediated ATP nucleotide exchange and thereby activates the unfolded protein response (UPR) pathway in the presence of endoplasmic reticulum stress. May play a role as a molecular chaperone and participate in protein folding.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RCW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCW9#function" }, { "database": "UniProtKB", "id": "ARBA00093341", "url": "https://www.uniprot.org/uniprotkb/ARBA00093341#function" }, { "database": "UniProtKB", "id": "A0A286ZIH0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIH0#function" }, { "database": "UniProtKB", "id": "A0A286ZX11", "url": "https://www.uniprot.org/uniprotkb/A0A286ZX11#function" }, { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HYOU1", "url": "https://www.uniprot.org/uniprotkb/F1SAI8", "locus": { "chromosome": "9", "start_pos": 46264933, "end_pos": 46276995, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015106", "url": "https://www.ensembl.org/id/ENSSSCG00000015106" } ] } } ], "crossref": [ { "id": "F1SAI8", "url": "https://alphafold.ebi.ac.uk/entry/F1SAI8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015106", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015106", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd10230", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10230", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516870", "url": "https://www.ncbi.nlm.nih.gov/gene/100516870", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "SRTPMIQ", "url": "https://omabrowser.org/oma/group/SRTPMIQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZZF0", "url": "https://www.orthodb.org/?gene=A0A286ZZF0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45639", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45639", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45639:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45639:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00012", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00012", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27508", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27508", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005667473", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667473", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZIH0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZIH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIH0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZX11", "url": "https://www.uniprot.org/uniprotkb/A0A286ZX11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZX11-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZX11-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZZF0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZZF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZF0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGS6", "url": "https://www.uniprot.org/uniprotkb/A0A287BGS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGS6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R315", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R315", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R315-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R315-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RCW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RCW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCW9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAI8-1", "url": "https://www.uniprot.org/uniprotkb/F1SAI8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAMVRRQRPRRLACWALMAVLLADLLALSDTLAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFFGDSAASMAIKNPKATLRYFQHLLGKQENNPHVALYRARFPEHELGFDPQRQTVYFQISPQLQFSPEEVLSMLLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINTTAQNIMFYDMGAGSTVCTIVTYQTVKTKDSGVQPQLQIRGVGFDRTLGGLEMELRLREHLARLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRAEFEDLCADLFERVPGPVQQALQSAEMKLDEIEQVILVGGATRVPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVEFTREVEEEPGVHSLKHNKRILFSRMGPYPQRKVITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGESFRKYPDYESKGIKAHFNLDESGVLSLDRVESVFETLVEDSPEEESTLTKLGNTISSLFGGGATPDAKENGTDSVQEEEEGPAEGSKDEPGEQAELKEEADSPTEDASPPPPPEPKGSAAPEGEKTTEKDDGEKPEAQKPSDKGEAGFESVPPAPEEEKKQKPARKQRMVEEIGVELVVLDLPDLPEDELARSAQKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREDISGKLSATSSWLEDEGFGATTAMLKEKLAELRKLCQGLFFRVEERKKWPERLSALDSLLNHSSMFLKGARLIPEMDQIFTEVEMTTLEKVINETWAWKNATMAEQAKLPATEKPVLLSKDIEAKMMALDREVQYLLNKAKFAKPRPRPKDKNGTRAEPPLNASASDQGDKVIPPPGQTEDAKPISEPEKETQAGSEPAGSEPLELGGPGAESEQKEQPTEQKRTLKNDEL", "length": 1000, "header": "tr|F1SAI8-1|F1SAI8_PIG Isoform 1 of Hypoxia up-regulated protein 1 OS=Sus scrofa OX=9823 GN=HYOU1 PE=1 SV=2 CANONICAL=F1SAI8-1" }, "isoforms": [ { "isoform_ac": "A0A286ZIH0-1", "url": "https://www.uniprot.org/uniprotkb/F1SAI8/entry#A0A286ZIH0-1", "sequence": { "sequence": "MAAMVRRQRPRRLACWALMAVLLADLLALSDTLAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFFGDSAASMAIKNPKATLRYFQHLLGKQENNPHVALYRARFPEHELGFDPQRQTVYFQISPQLQFSPEEVLSMLLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINTTAQNIMFYDMGAGSTVCTIVTYQTVKTKDSGVQPQLQIRGVGFDRTLGGLEMELRLREHLARLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRAEFEDLCADLFERVPGPVQQALQSAEMKLDEIEQVILVGGATRVPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVEFTREVEEEPGVHSLKHNKRILFSRMGPYPQRKVITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGESFRKYPDYESKGIKAHFNLDESGVLSLDRVESVFETLVEDSPEEESTLTKLGNTISSLFGGGATPDAKENGTDSVQKPSDKGEAGFESVPPAPEEEKKQKPARKQRMVEEIGVELVVLDLPDLPEDELARSAQKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREDISGKLSATSSWLEDEGFGATTAMLKEKLAELRKLCQGLFFRVEERKKWPERLSALDSLLNHSSMFLKGARLIPEMDQIFTEVEMTTLEKVINETWAWKNATMAEQAKLPATEKPVLLSKDIEAKMMALDREVQYLLNKAKFAKPRPRPKDKNGTRAEPPLNASASDQGDKVIPPPGQTEDAKPISEPEKETRSEPAGSEPLELGGPGAESEQKEQPTEQKRTLKNDEL", "length": 936, "header": "tr|A0A286ZIH0-1|F1SAI8_PIG Computationally mapped isoform of Hypoxia up-regulated protein 1 OS=Sus scrofa OX=9823 GN=HYOU1 PE=1 SV=2 CANONICAL=F1SAI8-1" }, "locus": { "chromosome": "9", "start_pos": 46275980, "end_pos": 46266339, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054640.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054640.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031351.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031351.2" } ] } }, { "isoform_ac": "A0A286ZX11-1", "url": "https://www.uniprot.org/uniprotkb/F1SAI8/entry#A0A286ZX11-1", "sequence": { "sequence": "MAAMVRRQRPRRLACWALMAVLLADLLALSDTLAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFFGDSAASMAIKNPKATLRYFQHLLGKQENNPHVALYRARFPEHELGFDPQRQTVYFQISPQLQFSPEEVLSMLLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINTTAQNIMFYDMGAGSTVCTIVTYQTVKTKDSGVQPQLQIRGVGFDRTLGGLEMELRLREHLARLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRAEFEDLCADLFERVPGPVQQALQSAEMKLDEIEQVILVGGATRVPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVEFTREVEEEPGVHSLKHNKRILFSRMGPYPQRKVITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGESFRKYPDYESKGIKAHFNLDESGVLSLDRVESVFETLVEDSPEEESTLTSKMSVHTCACVCERVSLCAFQGGGQALPLGLGVESRPSSPLSVWVFFFLELGNTISSLFGGGATPDAKENGTDSVQEEEEGPAEGSKDEPGEQAELKEEADSPTEDASPPPPPEPKGSAAPEGEKTTEKDDGEKPEAQKPSDKGEAGFESVPPAPEEEKKQKPARKQRMVEEIGVELVVLDLPDLPEDELARSAQKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREDISGKLSATSSWLEDEGFGATTAMLKEKLAELRKLCQGLFFRVEERKKWPERLSALDSLLNHSSMFLKGARLIPEMDQIFTEVEMTTLEKVINETWVIPASIHNPARWAVLGSVGDAEKWRGRPESCV", "length": 946, "header": "tr|A0A286ZX11-1|F1SAI8_PIG Computationally mapped isoform of Hypoxia up-regulated protein 1 OS=Sus scrofa OX=9823 GN=HYOU1 PE=1 SV=1 CANONICAL=F1SAI8-1" }, "locus": { "chromosome": "9", "start_pos": 46275980, "end_pos": 46267646, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047579.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047579.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036159.1", "url": "https://www.ensembl.org/id/ENSSSCP00000036159.1" } ] } }, { "isoform_ac": "A0A286ZZF0-1", "url": "https://www.uniprot.org/uniprotkb/F1SAI8/entry#A0A286ZZF0-1", "sequence": { "sequence": "MAAMVRRQRPRRLACWALMAVLLADLLALSDTLAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFFGDSAASMAIKNPKATLRYFQHLLGKQENNPHVALYRARFPEHELGFDPQRQTVYFQISPQLQFSPEEVLSMLLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINTTAQNIMFYDMGAGSTVCTIVTYQTVKTKDSGVQPQLQIRGVGFDRTLGGLEMELRLREHLARLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRAEFEDLCADLFERVPGPVQQALQSAEMKLDEIEQVILVGGATRVPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVEFTREVEEEPGVHSLKHNKRILFSRMGPYPQRKVITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGESFRKYPDYESKGIKAHFNLDESGVLSLDRVESVFETLVEDSPEEESTLTKLGNTISSLFGGGATPDAKENGTDSVQEEEEGPAEGSKDEPGEQAELKEEADSPTEDASPPPPPEPKGSAAPEGEKTTEKDDGEKPEAQKPSDKGEAGFESVPPAPEEEKKQKPARKQRMVEEIGVELVVLDLPDLPEDELARSAQKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREDISGKLSATSSWLEDEGFGATTAVRGLPGHGRQKWRPSLPLPGSEREEGCDVRHREGCRTGSSTALSSPQPPATPAHLRQMLKEKLAELRKLCQGLFFRVEERKKWPERLSALDSLLNHSSMFLKGARLIPEMDQIFTEVEMTTLEKVINETWAWKNATMAEQAKLPATEKPVLLSKDIEAKMMALDREVQYLLNKAKFAKPRPRPKDKNGTRAEPPLNASASDQGDKVIPPPGQTEDAKPISEPEKETRSEPAGSEPLELGGPGAESEQKEQPTEQKRTLKNDEL", "length": 1055, "header": "tr|A0A286ZZF0-1|F1SAI8_PIG Computationally mapped isoform of Hypoxia up-regulated protein 1 OS=Sus scrofa OX=9823 GN=HYOU1 PE=1 SV=1 CANONICAL=F1SAI8-1" }, "locus": { "chromosome": "9", "start_pos": 46275980, "end_pos": 46266339, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046805.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046805.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037024.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037024.2" } ] } }, { "isoform_ac": "A0A287BGS6-1", "url": "https://www.uniprot.org/uniprotkb/F1SAI8/entry#A0A287BGS6-1", "sequence": { "sequence": "MAAMVRRQRPRRLACWALMAVLLADLLALSDTLAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFFGDSAASMAIKNPKATLRYFQHLLGKQENNPHVALYRARFPEHELGFDPQRQTVYFQISPQLQFSPEEVLSMLLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINTTAQNIMFYDMGAGSTVCTIVTYQTVKTKDSGVQPQLQIRGVGFDRTLGGLEMELRLREHLARLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRAEFEDLCADLFERVPGPVQQALQSAEMKLDEIEQVILVGGATRVPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVEFTREVEEEPGVHSLKHNKRILFSRMGPYPQRKVITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGESFRKYPDYESKGIKAHFNLDESGVLSLDRVESVFETLMSVLFGGGATPDAKENGTDSVQEEEEGPAEGSKDEPGEQAELKEEADSPTEDASPPPPPEPKGSAAPEGEKTTEKDDGEKPEAQKPSDKGEAGFESVPPAPEEEKKQKPARKQRMVEEIGVELVVLDLPDLPEDELARSAQKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREDISGKLSATSSWLEDEGFGATTAVRGLPGHGRQKWRPSLPLPGSEREEGCDVRHREGCRTGSSTALSSPQPPATPAHLRQMLKEKLAELRKLCQGLFFRVEERKKWPERLSALDSLLNHSSMFLKGARLIPEMDQIFTEVEMTTLEKVINETWAWKNATMAEQAKLPATEKPVLLSKDIEAKMMALDREVQYLLNKAKFAKPRPRPKDKNGTRAEPPLNASASDQGDKVIPPPGQTEDAKPISEPEKETRSEPAGSEPLELGGPGAESEQKEQPTEQKRTLKNDEL", "length": 1038, "header": "tr|A0A287BGS6-1|F1SAI8_PIG Computationally mapped isoform of Hypoxia up-regulated protein 1 OS=Sus scrofa OX=9823 GN=HYOU1 PE=1 SV=2 CANONICAL=F1SAI8-1" }, "locus": { "chromosome": "9", "start_pos": 46275980, "end_pos": 46266339, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053909.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053909.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055545.3", "url": "https://www.ensembl.org/id/ENSSSCP00000055545.3" } ] } }, { "isoform_ac": "A0A5G2R315-1", "url": "https://www.uniprot.org/uniprotkb/F1SAI8/entry#A0A5G2R315-1", "sequence": { "sequence": "MAAMVRRQRPRRLACWALMAVLLADLLALSDTLAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFFGDSAASMAIKNPKATLRYFQHLLGKQENNPHVALYRARFPEHELGFDPQRQTVYFQISPQLQFSPEEVLSMLLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINTTAQNIMFYDMGAGSTVCTIVTYQTVKTKDSGVQPQLQIRGVGFDRTLGGLEMELRLREHLARLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRAEFEDLCADLFERVPGPVQQALQSAEMKLDEIEQVILVGGATRVPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVEFTREVEEEPGVHSLKHNKRILFSRMGPYPQRKVITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGESFRKYPDYESKGIKAHFNLDESGVLSLDRVESVFETLVEDSPEEESTLTKLGNTISSLFGGGATPDAKENGTDSVQEEEEGPAEGSKDEPGEQAELKEEADSPTEDASPPPPPEPKGSAAPEGEKTTEKDDGEKPEAQKPSDKGEAGFESVPPAPEEEKKQKPARKQRMVEEIGVELVVLDLPDLPEDELARSAQKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREDISGKLSATSSWLEDEGFGATTAVRGLPGHGRQKWRPSLPLPGSEREEGCDVRHREGCRTGSSTALSSPQPPATPAHLRQMLKEKLAELRKLCQGLFFRVEERKKWPERLSALDSLLNHSSMFLKGARLIPEMDQIFTEVEMTTLEKVINETWVIPASIHNPARWAVLGSVGDAEKWRGRPESCV", "length": 954, "header": "tr|A0A5G2R315-1|F1SAI8_PIG Computationally mapped isoform of Hypoxia up-regulated protein 1 OS=Sus scrofa OX=9823 GN=HYOU1 PE=1 SV=1 CANONICAL=F1SAI8-1" }, "locus": { "chromosome": "9", "start_pos": 46275980, "end_pos": 46267646, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069790.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069790.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064944.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064944.1" } ] } }, { "isoform_ac": "A0A5G2RCW9-1", "url": "https://www.uniprot.org/uniprotkb/F1SAI8/entry#A0A5G2RCW9-1", "sequence": { "sequence": "MAAMVRRQRPRRLACWALMAVLLADLLALSDTLAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFFGDSAASMAIKNPKATLRYFQHLLGKQENNPHVALYRARFPEHELGFDPQRQTVYFQISPQLQFSPEEVLSMLLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINTTAQNIMFYDMGAGSTVCTIVTYQTVKTKDSGVQPQLQIRGVGFDRTLGGLEMELRLREHLARLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRAEFEDLCADLFERVPGPVQQALQSAEMKLDEIEQVILVGGATRVPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVEFTREVEEEPGVHSLKHNKRILFSRMGPYPQRKVITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGESFRKYPDYESKGIKAHFNLDESGVLSLDRVESVFETLVEDSPEEESTLTSKMSVHTCACVCERVSLCAFQGGGQALPLGLGVESRPSSPLSVWVFFFLELGNTISSLFGGGATPDAKENGTDSVQEEEEGPAEGSKDEPGEQAELKEEADSPTEDASPPPPPEPKGSAAPEGEKTTEKDDGEKPEAQKPSDKGEAGFESVPPAPEEEKKQKPARKQRMVEEIGVELVVLDLPDLPEDELARSAQKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREDISGKLSATSSWLEDEEGCRTAELRKLCQGLFFRVEERKKWPERLSALDSLLNHSSMFLKGARLIPEMDQIFTEVEMTTLEKVINETWVIPASIHNPARWAVLGSVGDAEKWRGRPESCV", "length": 938, "header": "tr|A0A5G2RCW9-1|F1SAI8_PIG Computationally mapped isoform of Hypoxia up-regulated protein 1 OS=Sus scrofa OX=9823 GN=HYOU1 PE=1 SV=1 CANONICAL=F1SAI8-1" }, "locus": { "chromosome": "9", "start_pos": 46275980, "end_pos": 46267646, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089600.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089600.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072137.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072137.1" } ] } }, { "isoform_ac": "F1SAI8-1", "url": "https://www.uniprot.org/uniprotkb/F1SAI8/entry#F1SAI8-1", "sequence": { "sequence": "MAAMVRRQRPRRLACWALMAVLLADLLALSDTLAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFFGDSAASMAIKNPKATLRYFQHLLGKQENNPHVALYRARFPEHELGFDPQRQTVYFQISPQLQFSPEEVLSMLLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINTTAQNIMFYDMGAGSTVCTIVTYQTVKTKDSGVQPQLQIRGVGFDRTLGGLEMELRLREHLARLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRAEFEDLCADLFERVPGPVQQALQSAEMKLDEIEQVILVGGATRVPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVEFTREVEEEPGVHSLKHNKRILFSRMGPYPQRKVITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGESFRKYPDYESKGIKAHFNLDESGVLSLDRVESVFETLVEDSPEEESTLTKLGNTISSLFGGGATPDAKENGTDSVQEEEEGPAEGSKDEPGEQAELKEEADSPTEDASPPPPPEPKGSAAPEGEKTTEKDDGEKPEAQKPSDKGEAGFESVPPAPEEEKKQKPARKQRMVEEIGVELVVLDLPDLPEDELARSAQKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREDISGKLSATSSWLEDEGFGATTAMLKEKLAELRKLCQGLFFRVEERKKWPERLSALDSLLNHSSMFLKGARLIPEMDQIFTEVEMTTLEKVINETWAWKNATMAEQAKLPATEKPVLLSKDIEAKMMALDREVQYLLNKAKFAKPRPRPKDKNGTRAEPPLNASASDQGDKVIPPPGQTEDAKPISEPEKETQAGSEPAGSEPLELGGPGAESEQKEQPTEQKRTLKNDEL", "length": 1000, "header": "tr|F1SAI8-1|F1SAI8_PIG Isoform 1 of Hypoxia up-regulated protein 1 OS=Sus scrofa OX=9823 GN=HYOU1 PE=1 SV=2 CANONICAL=F1SAI8-1" }, "locus": { "chromosome": "9", "start_pos": 46275980, "end_pos": 46266339, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016472.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016472.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016029.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016029.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZIH0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIH0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "F4JMJ1-1", "protein_name": "Heat shock 70 kDa protein 17", "gene_name": "HSP70-17", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGKIFSWLVVLLSLISLVPVPSESAVLSVDLGSEWVKVAVVNLKRGQSPISVAINEMSKRKSPALVAFQSGDRLLGEEAAGITARYPNKVYSQLRDMVGKPFKHVKDFIDSVYLPFDIVEDSRGAVGIKIDDGSTVYSVEELLAMILGYASNLAEFHAKIPVKDMVVSVPPYFGQAERRGLIQASQLAGVNVLSLVNEHSGAALQYGIDKDFANGSRHVIFYDMGSSSTYAALVYYSAYSEKEYGKTVSVNQFQVKDVRWDLGLGGQSMEMRLVEHFADEFNKQLGNGVDVRKFPKAMAKLKKQVKRTKEILSANTAAPISVESLHDDRDFRSTITREKFEELCKDLWERSLTPLKDVLKHSGLKIDDISAVELIGGATRVPKLQSTIQEFIGKQQLDKHLDADEAIVLGSALHAANLSDGIKLKRRLGIVDGSPYGFLVELEGPNVKKDESTKQQLVPRMKKLPSKMFRSFVLDKDFDVSLAYESEGILPPGTTSPVFAQYSVSGLADASEKYSSRNLSAPIKANLHFSLSRSGILSLDRGDAVIEITEWVDVPKKNVTIDSNTTTSTGNATDENSQENKEDLQTDAENSTASNTTAEEPAVASLGTEKKLKKRTFRIPLKVVEKTVGPGAPFSKESLAEAKIKLEALDKKDRERRRTAELKNNLESYIYATKEKLETPEFEKISTQEERKAFVEKLDEVQDWLYMDGEDANATEFEKRLDSLKAIGSPISFRSEELTARPVAIEYARKYLTELKEIIKEWETNKTWLPKEKIDEVSKEAEKVKSWLDKNVAEQEKTSLWSKPVFTSTEVYAKVFTLQDKVTKVNKIPKPKPKIEKVTKTENTTKEEEQSKSSDEAAKEEESHDEL", "length": 867 }, "evidence": [ { "id": "F1SAI8", "url": "https://omabrowser.org/oma/group/F1SAI8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O46067-1", "protein_name": "Hypoxia up-regulated protein 1", "gene_name": "Grp170", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MKLVLLLSALLAGIALSQGAAVMSVDLGSEWMKVGVVSPGVPMEIALNRESKRKTPAILAFRDGTRTIGEDAQTIGIKDPNSAYGYLLDLLGKTIDNPIVDLYRKRFPYYNIVGDPERNTVVFRKSDTDEFSVEELVAQLLVKAKQFAQESVQQPITECVLTVPGYFGQAEREALLSAAQLANLKVLQLINDYAAVALNYGVFHRGEINETAQYFLFYDMGAYKTSAAVVSYQLVKDKQTREINPVVQVLGVGYDRTLGGLEIQLRLRDYLAQEFNALKKTKTDVTTSPRALAKLFKEAGRLKNVLSANTEFFAQIENLIEDIDFKLPVTREKLEQLCEDLWPRATKPLEEALASSHLSLDVINQVILFGGGTRVPRVQETIKAVIKQELGKNLNADESATMGAVYKAADLSAGFKVKKFVVKDATLFPLQVSFERDPGDGAAVKQVKRALFALMNPYPQKKVITFNKHTDDFEFYVNYADLDRYSKEEIAALGSLNVTKVQLKQVKELLEKSKKELVDNKGIKAYFYLDDSGIFRCTGVEYVYEKQKPEDDADEDSTLSKFGSTLSKLFTKEGEEKKDNSEQEEAANAGEEPSKSEDNEKAKEEDASKEQKSEESTKQDTEAKNETIKLVTVKSPVTYESQTQFVVPLVGSAYDQSVAKLAAINKAEEQRVRLESAFNALEAHIIEVQQKLDEESYAKCATAEEKEKLLAECSTLGEWLYEDLEDPKAEIYEEKLAQLKKLSNVFLARHWEHEERPEAIKALKGMIDGAEKFLVTGRNLTKDTNPEKDVFTQVEIDTLDKVITETNAWLKTETAAQKKLAKNADIRLTVKDITDKMSLLDREVKYLVNKIKIWKPKVKPAAEKEKKKEEEVVASGSGDDTKSEDAEQQQEQATKEEQQEQEPVDEITPTPAEEETKTPHSEL", "length": 923 }, "evidence": [ { "id": "F1SAI8", "url": "https://omabrowser.org/oma/group/F1SAI8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q63617-1", "protein_name": "Hypoxia up-regulated protein 1", "gene_name": "Hyou1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAATVRRQRPRRLLCWALVAVLLADLLALSDTLAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKNPKATLRYFQHLLGKQADNPHVALYRSRFPEHELNVDPQRQTVRFQISPQLQFSPEEVLGMVLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINSTAQNIMFYDMGSGSTVCTIVTYQTVKTKEAGTQPQLQIRGVGFDRTLGGLEMELRLREHLAKLFNEQRKGQKAKDVRENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRVEFEELCADLFDRVPGPVQQALQSAEMSLDQIEQVILVGGPTRVPKVQEVLLKPVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVEFTREVEEEPGLRSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGESFKKYPDYESKGIKAHFNLDESGVLSLDRVESVFETLVEDSPEEESTLTKLGNTISSLFGGGTSSDAKENGTDAVQEEEESPAEGSKDEPAEQGELKEEAEAPMEDTSQPPPSEPKGDAAREGETPDEKESGDKSEAQKPNEKGQAGPEGVPPAPEEEKKQKPARKQKMVEEIGVELAVLDLPDLPEDELAHSVQKLEDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREEISGKLSATSTWLEDEGFGATTVMLKDKLAELRKLCQGLFFRVEERRKWPERLSALDNLLNHSSIFLKGARLIPEMDQIFTDVEMTTLEKVINDTWTWKNATLAEQAKLPATEKPVLLSKDIEAKMMALDREVQYLLNKAKFTKPRPRPKDKNGTRTEPPLNASAGDQEEKVIPPTGQTEEAKAILEPDKEGLGTEAADSEPLELGGPGAESEQAEQTAGQKRPLKNDEL", "length": 999 }, "evidence": [ { "id": "F1SAI8", "url": "https://omabrowser.org/oma/group/F1SAI8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9JKR6-1", "protein_name": "Hypoxia up-regulated protein 1", "gene_name": "Hyou1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAATVRRQRPRRLLCWALVAVLLADLLALSDTLAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKNPKATLRYFQHLLGKQADNPHVALYRSRFPEHELIVDPQRQTVRFQISPQLQFSPEEVLGMVLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINSTAQNVMFYDMGSGSTVCTIVTYQTVKTKEAGMQPQLQIRGVGFDRTLGGLEMELRLREHLAKLFNEQRKGQKAKDVRENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRVEFEELCADLFDRVPGPVQQALQSAEMSLDQIEQVILVGGATRVPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVEFTREVEEEPGLRSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGESFKKYPDYESKGIKAHFNLDESGVLSLDRVESVFETLVEDSPEEESTLTKLGNTISSLFGGGTSSDAKENGTDAVQEEEESPAEGSKDEPAEQGELKEEAEPPAEETSQPPPSEPKGDAAREGEKPDEKESGDKPEAQKPNEKGQAGPEGAAPAPEEDKKPKPARKQKMVEEIGVELAVLDLPDLPEDELARSVQKLEELTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREEISGKLSATSTWLEDEGFGATTVMLKDKLAELRKLCQGLFFRVEERRKWPERLSALDNLLNHSSIFLKGARLIPEMDQVFTEVEMTTLEKVINDTWAWKNATLAEQAKLPATEKPVLLSKDIEAKMMALDREVQYLLNKAKFTKPRPRPKDKNGTRAEPPLNASAGDQEEKVIPPAGQTEEAKPILEPDKEETGTEPADSEPLELGGPGAGPEQEEQSAGQKRPSKNDEL", "length": 999 }, "evidence": [ { "id": "F1SAI8", "url": "https://omabrowser.org/oma/group/F1SAI8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y4L1-1", "protein_name": "Hypoxia up-regulated protein 1", "gene_name": "HYOU1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADKVRRQRPRRRVCWALVAVLLADLLALSDTLAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKNPKATLRYFQHLLGKQADNPHVALYQARFPEHELTFDPQRQTVHFQISSQLQFSPEEVLGMVLNYSRSLAEDFAEQPIKDAVITVPVFFNQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINTTAQNIMFYDMGSGSTVCTIVTYQMVKTKEAGMQPQLQIRGVGFDRTLGGLEMELRLRERLAGLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRVEFEELCADLFERVPGPVQQALQSAEMSLDEIEQVILVGGATRVPRVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVVYPILVEFTREVEEEPGIHSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGDSFKKYPDYESKGIKAHFNLDESGVLSLDRVESVFETLVEDSAEEESTLTKLGNTISSLFGGGTTPDAKENGTDTVQEEEESPAEGSKDEPGEQVELKEEAEAPVEDGSQPPPPEPKGDATPEGEKATEKENGDKSEAQKPSEKAEAGPEGVAPAPEGEKKQKPARKRRMVEEIGVELVVLDLPDLPEDKLAQSVQKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREEISGKLSAASTWLEDEGVGATTVMLKEKLAELRKLCQGLFFRVEERKKWPERLSALDNLLNHSSMFLKGARLIPEMDQIFTEVEMTTLEKVINETWAWKNATLAEQAKLPATEKPVLLSKDIEAKMMALDREVQYLLNKAKFTKPRPRPKDKNGTRAEPPLNASASDQGEKVIPPAGQTEDAEPISEPEKVETGSEPGDTEPLELGGPGAEPEQKEQSTGQKRPLKNDEL", "length": 999 }, "evidence": [ { "id": "F1SAI8", "url": "https://omabrowser.org/oma/group/F1SAI8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ], "pmid": "" }, { "name": "adenyl-nucleotide exchange factor activity", "id": "GO:0000774", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000774", "evidence": [ { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "endoplasmic reticulum lumen", "id": "GO:0005788", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005788", "evidence": [ { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ], "pmid": "" }, { "name": "endoplasmic reticulum chaperone complex", "id": "GO:0034663", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034663", "evidence": [ { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "response to stress", "id": "GO:0006950", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006950", "evidence": [ { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ], "pmid": "" }, { "name": "negative regulation of intrinsic apoptotic signaling pathway", "id": "GO:2001243", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001243", "evidence": [ { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ], "pmid": "" }, { "name": "regulation of cellular response to stress", "id": "GO:0080135", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0080135", "evidence": [ { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ], "pmid": "" }, { "name": "cellular response to hypoxia", "id": "GO:0071456", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071456", "evidence": [ { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ], "pmid": "" }, { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ], "pmid": "" }, { "name": "response to endoplasmic reticulum stress", "id": "GO:0034976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034976", "evidence": [ { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ], "pmid": "" }, { "name": "negative regulation of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway", "id": "GO:1903382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903382", "evidence": [ { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ], "pmid": "" }, { "name": "negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway", "id": "GO:1903298", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903298", "evidence": [ { "database": "UniProtKB", "id": "F1SAI8", "url": "https://www.uniprot.org/uniprotkb/F1SAI8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 222, "end_pos": 224, "annotation": "n_glycosylation_sequon" }, { "start_pos": 515, "end_pos": 517, "annotation": "n_glycosylation_sequon" }, { "start_pos": 596, "end_pos": 598, "annotation": "n_glycosylation_sequon" }, { "start_pos": 830, "end_pos": 832, "annotation": "n_glycosylation_sequon" }, { "start_pos": 862, "end_pos": 864, "annotation": "n_glycosylation_sequon" }, { "start_pos": 869, "end_pos": 871, "annotation": "n_glycosylation_sequon" }, { "start_pos": 922, "end_pos": 924, "annotation": "n_glycosylation_sequon" }, { "start_pos": 931, "end_pos": 933, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAI8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1000, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAI8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAI8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 155, "end_pos": 157 }, { "start_pos": 222, "end_pos": 224 }, { "start_pos": 515, "end_pos": 517 }, { "start_pos": 596, "end_pos": 598 }, { "start_pos": 830, "end_pos": 832 }, { "start_pos": 862, "end_pos": 864 }, { "start_pos": 869, "end_pos": 871 }, { "start_pos": 922, "end_pos": 924 }, { "start_pos": 931, "end_pos": 933 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SAN6-1", "uniprot_ac": "F1SAN6", "uniprot_id": "F1SAN6_PIG", "mass": { "chemical_mass": 68563.0, "monoisotopic_mass": 68563.0 }, "refseq": { "ac": "XP_005652963", "name": "acetolactate synthase-like protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652963" }, "gene_names": [ { "name": "ILVBL", "type": "recommended", "evidence": [ { "id": "F1SAN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN6" } ] }, { "name": "ILVBL", "type": "synonym", "evidence": [ { "id": "XP_005652963", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652963" } ] } ], "protein_names": [ { "name": "2-hydroxyacyl-CoA lyase 2", "type": "recommended", "evidence": [ { "id": "F1SAN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN6/entry#names_and_taxonomy" } ] }, { "name": "Acetolactate synthase-like protein", "type": "synonym", "evidence": [ { "id": "F1SAN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN6/entry#names_and_taxonomy" } ] }, { "name": "IlvB-like protein", "type": "synonym", "evidence": [ { "id": "F1SAN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN6/entry#names_and_taxonomy" } ] }, { "name": "acetolactate synthase-like protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005652963", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652963" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAN6", "url": "https://www.uniprot.org/uniprotkb/F1SAN6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ILVBL", "url": "https://www.uniprot.org/uniprotkb/F1SAN6", "locus": { "chromosome": "2", "start_pos": 62451371, "end_pos": 62435155, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013830", "url": "https://www.ensembl.org/id/ENSSSCG00000013830" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013830", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013830", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02004", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02004", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd07035", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07035", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523720", "url": "https://www.ncbi.nlm.nih.gov/gene/100523720", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000399", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000399", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029061", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029061", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045229", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045229", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SAN6", "url": "https://www.orthodb.org/?gene=F1SAN6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18968", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18968", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18968:SF166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18968:SF166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00205", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00205", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02775", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02775", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02776", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02776", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005652963", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652963", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "55196", "url": "https://www.rhea-db.org/rhea/55196", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "55212", "url": "https://www.rhea-db.org/rhea/55212", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZIW5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZIW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIW5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8Z5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8Z5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RCA6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RCA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCA6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0T2U2", "url": "https://www.uniprot.org/uniprotkb/A0A8D0T2U2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0T2U2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0T2U2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAN6", "url": "https://www.uniprot.org/uniprotkb/F1SAN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAN6-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVRCYHMETPAAAAPAGGFFPSFLFLAFGTLVAALLGAAYRLGLFYQLTHKVDKASIRNGGENVAAVLKAHGVKFLFTLVGGHISPLLVACEKLGIRVVDTRQEVTAVFAADAVARLTGSVGVAAVTAGPGLTNTVTAVKNAQIAQSPILLLGGAASTLLQNRGALQAVDQMSLFQPLCKFCASVRRVRDIIPTLRAAMAAAQSGTPGPVFVELPVDVLYPYFMVQKEMVPAKPPKGLVGRGVSWYLENHLANLFAGAWEPRPEGPLPLDIPQASPEKVQRCVEILSRAKRPLMLLGSQALLPPTPADKLRVAVETLGVPCFLGGMARGLLGRNHPLHIRQNRSAALKKADVVILAGMVCDFRLSYGRVLSRSSKIIIVNRDRKEMLINSDIFWKPQEAVQGDVGSFVVKLVEGLQGQTWASDWAEELRQADRQKEQTFKEKALMPLAQHLNPVRVLQLVEETLPDNSILVVDGGDFVGTAAHLVQPRGPLCWLDPGAFGTLGVGAGFALGAKLCRPDAEVWCLFGDGAFGYSLIEFDTFVRHKIPVMALIGNDAGWTQISREQVPSLGSNVACGLAYTDYHKAAMGLGAQGLLLSRESEDQVVKVLRDAQQQCQDGHPVVVNILIGRTDFRDGSIAV", "length": 638, "header": "tr|F1SAN6-1|F1SAN6_PIG Isoform 1 of 2-hydroxyacyl-CoA lyase 2 OS=Sus scrofa OX=9823 GN=ILVBL PE=1 SV=3 CANONICAL=F1SAN6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZIW5-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN6/entry#A0A286ZIW5-1", "sequence": { "sequence": "MRSERGRNLCRGSQCYHMETPAAAAPAGGFFPSFLFLAFGTLVAALLGAAYRLGLFYQLTHKVDKASIRNGGENVAAVLKAHGVKFLFTLVGGHISPLLVACEKLGIRVVDTRQEVTAVFAADAVARLTGSVGVAAVTAGPGLTNTVTAVKNAQIAQSPILLLGGAASTLLQNRGALQAVDQMSLFQPLCKFCASVRRVRDIIPTLRAAMAAAQSGTPGPVFVELPVDVLYPYFMVQKEMVPAKPPKGLVGRGVSWYLENHLANLFAGAWEPRPEGPLPLDIPQASPEKVQRCVEILSRAKRPLMLLGSQALLPPTPADKLRVAVETLGVPCFLGGMARGLLGRNHPLHIRQNRSAALKKADVVILAGMVCDFRLSYGRVLSRSSKIIIVNRDRKEMLINSDIFWKPQEAVQGDVGSFVVKLVEGLQGQTWASDWAEELRQADRQKEQTFKEKALMPLAQHLNPVRVLQLVEETLPDNSILVVDGGDFVGTAAHLVQPRGPLCWLDPGAFGTLGVGAGFALGAKLCRPDAEVWCLFGDGAFGYSLIEFDTFVRHKIPVMALIGNDAGWTQISREQVPSLGSNVACGLAYTDYHKAAMGLGAQGLLLSRESEDQVVKVLRDAQQQCQDGHPVVVNILIGRTDFRDGSIAV", "length": 649, "header": "tr|A0A286ZIW5-1|F1SAN6_PIG Computationally mapped isoform of 2-hydroxyacyl-CoA lyase 2 OS=Sus scrofa OX=9823 GN=ILVBL PE=1 SV=2 CANONICAL=F1SAN6-1" }, "locus": { "chromosome": "2", "start_pos": 62446746, "end_pos": 62435302, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045459.2", "url": "https://www.ensembl.org/id/ENSSSCT00000045459.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031422.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031422.2" } ] } }, { "isoform_ac": "A0A5G2R8Z5-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN6/entry#A0A5G2R8Z5-1", "sequence": { "sequence": "MVRCYHMETPAAAAPAGGFFPSFLFLAFGTLVAALLGAAYRLGLFYQLTHKVDKASIRNGGENVAAVLKAHGVKFLFTLVGGHISPLLVACEKLGIRVVDTRQEVTAVFAADAVARLTGSVGVAAVTAGPGLTNTVTAVKNAQIAQSPILLLGGAASTLLQNRGALQAVDQMSLFQPLCKFCASVRRVRDIIPTLRAAMAAAQSGTPGPVFVELPVDVLYPYFMVQKEMVPAKPPKGLVGRGVSWYLENHLANLFAGAWEPRPEGPLPLDIPQASPEKVQRCVEILSRAKRPLMLLGSQALLPPTPADKLRVAVETLGVPCFLGGMARGLLGRNHPLHIRQNRSAALKKADVVILAGMVCDFRLSYGRVLSRSSKIIIVNRDRKEMLINSDIFWKPQEAVQGDVGSFVVKLVEGLQGQTWASDWAEELRQADRQKEQTFKEKALMPLAQHLNPVRVLQLVEETLPDNSILVVDGGDFVGTAAHLVQPRGPLCWLDPGAFGTLGVGAGFALGAKLCRPDAEPFVLPRKTVGSSTVPWAQGLCRRTPGSHANTRARSSRAASSSRWKVWSKRRKSGPPRSGPVRARATPSTCSRQQRSRGVAPGAGRSPPSPYRCRLRRPQSAAGGDRADGPTS", "length": 632, "header": "tr|A0A5G2R8Z5-1|F1SAN6_PIG Computationally mapped isoform of 2-hydroxyacyl-CoA lyase 2 OS=Sus scrofa OX=9823 GN=ILVBL PE=1 SV=2 CANONICAL=F1SAN6-1" }, "locus": { "chromosome": "2", "start_pos": 62451368, "end_pos": 62435875, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082156.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082156.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070593.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070593.2" } ] } }, { "isoform_ac": "A0A5G2RCA6-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN6/entry#A0A5G2RCA6-1", "sequence": { "sequence": "MVRCYHMETPAAAAPAGGFFPSFLFLAFGTLVAALLGAAYRLGLFYQLTHKVDKASIRNGGENVAAVLKAHGVKFLFTLVGGHISPLLVACEKLGIRVVDTRQEVTAVFAADAVARLTGSVGVAAVTAGPGLTNTVTAVKNAQIAQSPILLLGGAASTLLQNRGALQAVDQMSLFQPLCKFCASVRRVRDIIPTLRAAMAAAQSGTPGPVFVELPVDVLYPYFMVQKEMVPAKPPKGLVGRGVSWYLENHLANLFAGAWEPRPEGPLPLDIPQASPEKVQRCVEILSRAKRPLMLLGSQALLPPTPADKLRVAVETLGVPCFLGGMARGLLGRNHPLHIRQNRSAALKKADVVILAGMVCDFRLSYGRVLSRSSKIIIVNRDRKEMLINSDIFWKPQEAVQGDVGSFVVKLVEGLQGQTWASDWAEELRQADRQKEQTFKEKALMPLAQHLNPVRVLQLVEETLPDNSILVVDGGDFVGTAAHLVQPRGPLCWLDPGAFGTLGVGAGFALGAKLCRPDAEVWCLFGDGAFGYSLIEFDTFVRHKIPVMALIGNDAGWTQISREQVPSLGSNVACGLAYTDYHKAAMGLGAQGLLLSRESEDQMAPLPCRTSGVSALGSLPTPGLCLAGLESHPCLPWAYPLRPSDSATLPEDREGLEGSGLRGSLAAQSPWAFFFVGPMVPFLPSSFTH", "length": 689, "header": "tr|A0A5G2RCA6-1|F1SAN6_PIG Computationally mapped isoform of 2-hydroxyacyl-CoA lyase 2 OS=Sus scrofa OX=9823 GN=ILVBL PE=1 SV=2 CANONICAL=F1SAN6-1" }, "locus": { "chromosome": "2", "start_pos": 62446990, "end_pos": 62435875, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082649.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082649.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071862.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071862.2" } ] } }, { "isoform_ac": "A0A8D0T2U2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN6/entry#A0A8D0T2U2-1", "sequence": { "sequence": "METPAAAAPAGGFFPSFLFLAFGTLVAALLGAAYRLGLFYQLTHKVDKASIRNGGENVAAVLKAHGVKFLFTLVGGHISPLLVACEKLGIRVVDTRQEVTAVFAADAVARLTGPVFVELPVDVLYPYFMVQKEMVPAKPPKGLVGRGVSWYLENHLANLFAGAWEPRPEGPLPLDIPQASPEKVQRCVEILSRAKRPLMLLGSQALLPPTPADKLRVAVETLGVPCFLGGMARGLLGRNHPLHIRQNRSAALKKADVVILAGMVCDFRLSYGRVLSRSSKIIIVNRDRKEMLINSDIFWKPQEAVQGDVGSFVVKLVEGLQGQTWASDWAEELRQADRQKEQTFKEKALMPLAQHLNPVRVLQLVEETLPDNSILVVDGGDFVGTAAHLVQPRGPLCWLDPGAFGTLGVGAGFALGAKLCRPDAEVWCLFGDGAFGYSLIEFDTFVRHKIPVMALIGNDAGWTQISREQVPSLGSNVACGLAYTDYHKAAMGLGAQGLLLSRESEDQVVKVLRDAQQQCQDGHPVVVNILIGRTDFRDGSIAV", "length": 543, "header": "tr|A0A8D0T2U2-1|F1SAN6_PIG Computationally mapped isoform of 2-hydroxyacyl-CoA lyase 2 OS=Sus scrofa OX=9823 GN=ILVBL PE=1 SV=1 CANONICAL=F1SAN6-1" }, "locus": { "chromosome": "2", "start_pos": 62446746, "end_pos": 62436119, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037790.1", "url": "https://www.ensembl.org/id/ENSSSCT00000037790.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038650.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038650.1" } ] } }, { "isoform_ac": "F1SAN6-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN6/entry#F1SAN6-1", "sequence": { "sequence": "MVRCYHMETPAAAAPAGGFFPSFLFLAFGTLVAALLGAAYRLGLFYQLTHKVDKASIRNGGENVAAVLKAHGVKFLFTLVGGHISPLLVACEKLGIRVVDTRQEVTAVFAADAVARLTGSVGVAAVTAGPGLTNTVTAVKNAQIAQSPILLLGGAASTLLQNRGALQAVDQMSLFQPLCKFCASVRRVRDIIPTLRAAMAAAQSGTPGPVFVELPVDVLYPYFMVQKEMVPAKPPKGLVGRGVSWYLENHLANLFAGAWEPRPEGPLPLDIPQASPEKVQRCVEILSRAKRPLMLLGSQALLPPTPADKLRVAVETLGVPCFLGGMARGLLGRNHPLHIRQNRSAALKKADVVILAGMVCDFRLSYGRVLSRSSKIIIVNRDRKEMLINSDIFWKPQEAVQGDVGSFVVKLVEGLQGQTWASDWAEELRQADRQKEQTFKEKALMPLAQHLNPVRVLQLVEETLPDNSILVVDGGDFVGTAAHLVQPRGPLCWLDPGAFGTLGVGAGFALGAKLCRPDAEVWCLFGDGAFGYSLIEFDTFVRHKIPVMALIGNDAGWTQISREQVPSLGSNVACGLAYTDYHKAAMGLGAQGLLLSRESEDQVVKVLRDAQQQCQDGHPVVVNILIGRTDFRDGSIAV", "length": 638, "header": "tr|F1SAN6-1|F1SAN6_PIG Isoform 1 of 2-hydroxyacyl-CoA lyase 2 OS=Sus scrofa OX=9823 GN=ILVBL PE=1 SV=3 CANONICAL=F1SAN6-1" }, "locus": { "chromosome": "2", "start_pos": 62446746, "end_pos": 62435875, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015108.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015108.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014703.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014703.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 127, "start_aa": "Thr", "end_pos": 127, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr127", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 206, "start_aa": "Thr", "end_pos": 206, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr206", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 305, "start_aa": "Thr", "end_pos": 305, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr305", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZIW5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIW5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "magnesium ion binding", "id": "GO:0000287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000287", "evidence": [ { "database": "UniProtKB", "id": "F1SAN6", "url": "https://www.uniprot.org/uniprotkb/F1SAN6" } ], "pmid": "" }, { "name": "catalytic activity", "id": "GO:0003824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003824", "evidence": [ { "database": "UniProtKB", "id": "F1SAN6", "url": "https://www.uniprot.org/uniprotkb/F1SAN6" } ], "pmid": "" }, { "name": "thiamine pyrophosphate binding", "id": "GO:0030976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030976", "evidence": [ { "database": "UniProtKB", "id": "F1SAN6", "url": "https://www.uniprot.org/uniprotkb/F1SAN6" } ], "pmid": "" }, { "name": "flavin adenine dinucleotide binding", "id": "GO:0050660", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050660", "evidence": [ { "database": "UniProtKB", "id": "F1SAN6", "url": "https://www.uniprot.org/uniprotkb/F1SAN6" } ], "pmid": "" }, { "name": "acetolactate synthase activity", "id": "GO:0003984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003984", "evidence": [ { "database": "UniProtKB", "id": "F1SAN6", "url": "https://www.uniprot.org/uniprotkb/F1SAN6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SAN6", "url": "https://www.uniprot.org/uniprotkb/F1SAN6" } ], "pmid": "" }, { "name": "acetolactate synthase complex", "id": "GO:0005948", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005948", "evidence": [ { "database": "UniProtKB", "id": "F1SAN6", "url": "https://www.uniprot.org/uniprotkb/F1SAN6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "fatty acid alpha-oxidation", "id": "GO:0001561", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001561", "evidence": [ { "database": "UniProtKB", "id": "F1SAN6", "url": "https://www.uniprot.org/uniprotkb/F1SAN6" } ], "pmid": "" }, { "name": "L-valine biosynthetic process", "id": "GO:0009099", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009099", "evidence": [ { "database": "UniProtKB", "id": "F1SAN6", "url": "https://www.uniprot.org/uniprotkb/F1SAN6" } ], "pmid": "" }, { "name": "isoleucine biosynthetic process", "id": "GO:0009097", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009097", "evidence": [ { "database": "UniProtKB", "id": "F1SAN6", "url": "https://www.uniprot.org/uniprotkb/F1SAN6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "55196", "name": "", "equation": "2-hydroxyoctadecanoyl-CoA = heptadecanal + formyl-CoA", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "55196", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/55196" } ] }, { "id": "55212", "name": "", "equation": "(2R)-hydroxyhexadecanoyl-CoA = pentadecanal + formyl-CoA", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "55212", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/55212" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN6" }, { "id": "PF02776", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02776" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thiamine pyrophosphate enzyme N-terminal TPP-binding", "eco_id": "ECO_0000259", "start_pos": 59, "end_pos": 174, "start_aa": "Asn", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SAN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN6" }, { "id": "PF02775", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02775" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thiamine pyrophosphate enzyme TPP-binding", "eco_id": "ECO_0000259", "start_pos": 473, "end_pos": 624, "start_aa": "Asp", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SAN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN6" }, { "id": "PF00205", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00205" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thiamine pyrophosphate enzyme central", "eco_id": "ECO_0000259", "start_pos": 279, "end_pos": 411, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 127, 206, 305 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 342, "end_pos": 344 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": 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{ "start_pos": 1299, "end_pos": 1301, "annotation": "n_glycosylation_sequon" }, { "start_pos": 138, "end_pos": 140, "annotation": "n_glycosylation_sequon" }, { "start_pos": 169, "end_pos": 171, "annotation": "n_glycosylation_sequon" }, { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 350, "end_pos": 352, "annotation": "n_glycosylation_sequon" }, { "start_pos": 357, "end_pos": 359, "annotation": "n_glycosylation_sequon" }, { "start_pos": 417, "end_pos": 419, "annotation": "n_glycosylation_sequon" }, { "start_pos": 470, "end_pos": 472, "annotation": "n_glycosylation_sequon" }, { "start_pos": 510, "end_pos": 512, "annotation": "n_glycosylation_sequon" }, { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" }, { "start_pos": 768, "end_pos": 770, "annotation": "n_glycosylation_sequon" }, { "start_pos": 774, "end_pos": 776, "annotation": "n_glycosylation_sequon" }, { "start_pos": 855, "end_pos": 857, "annotation": "n_glycosylation_sequon" }, { "start_pos": 889, "end_pos": 891, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "45948", "name": "", "equation": "L-lysyl-[protein] + acetyl-CoA = N(6)-acetyl-L-lysyl-[protein] + CoA + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "45948", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/45948" } ] }, { "id": "R-SSC-5687090", "name": "p-S MAPK6 phosphorylates NCOA3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-SSC-442488" ], "output_participant_list": [ "R-SSC-5687005" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5687090", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687090" } ] }, { "id": "R-SSC-5687097", "name": "p-S857 NCOA3 binds ETV4", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5687097", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687097" } ] }, { "id": "R-SSC-9008258", "name": "NCOA3 binds ESR1:estrogen:TFGA gene", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9008258", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9008258" } ] }, { "id": "R-SSC-9008285", "name": "NCOA3 recruits EP300 to ESR1:estrogen:TFGA gene:NCOA3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9008285", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9008285" } ] }, { "id": "R-SSC-9012000", "name": "NR5A2, ZNF217 and NCOA3 bind GREB1 promoter", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9023860", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9023860" } ] }, { "id": "R-SSC-9843120", "name": "Coactivators are recruited to liganded PPARG:RXRA heterodimer", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. 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Classification" ] }, { "id": "IPR036436", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036436", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11905", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11905", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11905:SF158", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11905:SF158", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00200", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00200", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01421", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01421", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZN86", "url": "https://www.uniprot.org/uniprotkb/A0A286ZN86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZN86-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZN86-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SE43", "url": "https://www.uniprot.org/uniprotkb/F1SE43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SE43-1", "url": "https://www.uniprot.org/uniprotkb/F1SE43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVDWKLQQPSRGTRGSMRRMSSPSESQGGAAPGRRQAQSSAPCPGQHWTPESPAREPRKAQRSLALAVHPAPRPAMLLLLALLAAFGGLQARLDSEGIFLQVTVPQKIRSRESEDSETQVTYIITIDRKPYTLHLRKHPFLAQNFLVYTRNKNGSFHSEPSYFMMHCHYQGYVADFPNSAVTLSICSGLRGFLQFENISYGIEPLDSSASFEHIIYQVKNDSPDIPVLAENDSNVLQKDEPYKIHLSSQETTLSELLPQYLEMHIIVEKALYDYMGSEMMVVMQKIFQIIGLVNTMCSQFKLTVILSSLELWPDENQISTNGDMDDLLQRFLTWKQDSLILRPHDITFLLIYRKQPKYVGATSSGTICNKSGDANIIMYSEAITLEGFSVLMAQLLGLKIGLTYDDVNKCSCARATCIMNREAMFSSGIKMFSNCSMHAYRYFISTFEGRCLQNFPKLKPFHQNQSVCGNGILEPHEECDCGSERECQFKKCCDYNTCKLKGSVKCGSGSCCTSECELSEAGTPCRKSVDQECDFTEYCSGTSSDCVPDTHAMNGELCRLGTAYCYNGRCQTTDNQCAEIFGKGAQGAPFACFKEVNSLPNRPGDCGFKNSQPLPCEQSDVLCGKLACIWPNKNSYKNDVQSAVYSYTQGHECITTGSAMRSDGRDYAYVADGTVCGAQMYCINKTCKKVPLMGYNCNATTKCRGNGICNNLGNCHCLPGYRPPDCELQIGSPGGSIDDGNDHKSAIVFIKKAYNTHQGNWLILSFYISLPFFIIFIFMIMKRNEMRRSCNKENAEYEGHSVMVPESYNVDY", "length": 813, "header": "tr|F1SE43-1|F1SE43_PIG Isoform 1 of ADAM metallopeptidase domain 18 OS=Sus scrofa OX=9823 GN=ADAM18 PE=4 SV=5 CANONICAL=F1SE43-1" }, "isoforms": [ { 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isoform of ADAM metallopeptidase domain 18 OS=Sus scrofa OX=9823 GN=ADAM18 PE=4 SV=3 CANONICAL=F1SE43-1" }, "locus": { "chromosome": "17", "start_pos": 9233564, "end_pos": 9166288, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044825.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044825.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032923.3", "url": "https://www.ensembl.org/id/ENSSSCP00000032923.3" } ] } }, { "isoform_ac": "F1SE43-1", "url": "https://www.uniprot.org/uniprotkb/F1SE43/entry#F1SE43-1", "sequence": { "sequence": "MAVDWKLQQPSRGTRGSMRRMSSPSESQGGAAPGRRQAQSSAPCPGQHWTPESPAREPRKAQRSLALAVHPAPRPAMLLLLALLAAFGGLQARLDSEGIFLQVTVPQKIRSRESEDSETQVTYIITIDRKPYTLHLRKHPFLAQNFLVYTRNKNGSFHSEPSYFMMHCHYQGYVADFPNSAVTLSICSGLRGFLQFENISYGIEPLDSSASFEHIIYQVKNDSPDIPVLAENDSNVLQKDEPYKIHLSSQETTLSELLPQYLEMHIIVEKALYDYMGSEMMVVMQKIFQIIGLVNTMCSQFKLTVILSSLELWPDENQISTNGDMDDLLQRFLTWKQDSLILRPHDITFLLIYRKQPKYVGATSSGTICNKSGDANIIMYSEAITLEGFSVLMAQLLGLKIGLTYDDVNKCSCARATCIMNREAMFSSGIKMFSNCSMHAYRYFISTFEGRCLQNFPKLKPFHQNQSVCGNGILEPHEECDCGSERECQFKKCCDYNTCKLKGSVKCGSGSCCTSECELSEAGTPCRKSVDQECDFTEYCSGTSSDCVPDTHAMNGELCRLGTAYCYNGRCQTTDNQCAEIFGKGAQGAPFACFKEVNSLPNRPGDCGFKNSQPLPCEQSDVLCGKLACIWPNKNSYKNDVQSAVYSYTQGHECITTGSAMRSDGRDYAYVADGTVCGAQMYCINKTCKKVPLMGYNCNATTKCRGNGICNNLGNCHCLPGYRPPDCELQIGSPGGSIDDGNDHKSAIVFIKKAYNTHQGNWLILSFYISLPFFIIFIFMIMKRNEMRRSCNKENAEYEGHSVMVPESYNVDY", "length": 813, "header": "tr|F1SE43-1|F1SE43_PIG Isoform 1 of ADAM metallopeptidase domain 18 OS=Sus scrofa OX=9823 GN=ADAM18 PE=4 SV=5 CANONICAL=F1SE43-1" }, "locus": { "chromosome": "17", "start_pos": 9233564, "end_pos": 9166288, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007676.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007676.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007469.5", "url": "https://www.ensembl.org/id/ENSSSCP00000007469.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZN86", "url": "https://www.uniprot.org/uniprotkb/A0A286ZN86" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "metalloendopeptidase activity", "id": "GO:0004222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004222", "evidence": [ { "database": "UniProtKB", "id": "F1SE43", "url": "https://www.uniprot.org/uniprotkb/F1SE43" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SE43", "url": "https://www.uniprot.org/uniprotkb/F1SE43" } ], "pmid": "" }, { "name": "cell adhesion", "id": 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"https://www.ebi.ac.uk/interpro/entry/IPR028319", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047163", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047163", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24131", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24131", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24131:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24131:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21801", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21801", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6804759", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804759", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020937190", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937190", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZP43", "url": "https://www.uniprot.org/uniprotkb/A0A286ZP43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZP43-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZP43-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BNQ1", "url": "https://www.uniprot.org/uniprotkb/A0A287BNQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BNQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BNQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9X3", "url": "https://www.uniprot.org/uniprotkb/F1S9X3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9X3-1", "url": "https://www.uniprot.org/uniprotkb/F1S9X3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMPMILTVFLSNNEQILTEVPVTPETTCRDVVEFCKEPGEGSCHLAEVWRGNERPIPFDYMMYEHLQKWGPRREEVKFFLRHEDSPTESSEQGGRQTQEQRTQRNVINVPGEKRAENGVGNPRVELTLSELQDMAARQQQQIENQQQMLVAKEQRLHFLKQQERRQQQSVSENEKLQKLKERVEAQENKLKKIRAMRGQVDYSKIMNGNLSAEIERFSAMFQEKKQEVQTAILRVDQLSQQLEDLKKGKLNGFQSYTGKLTGPAAVELKRLYQELQIRNQLNQEQNSKLQQQKELLSKRNMEVAVMDKRISELRERLYGKKIQLSRVNGTSSPQSPLSTPGRVAAVGPYIQVPSSGSYSVPGDPVKPQSLTVAPSAAHGRSKSANDGNWPTLKQNSGSSVKGTQIASVDWRDSSTEGPLKQGAVSSQPVPLPALGATEKLGLEMGKVPPPIPGVGKQPPPSYGTYPSPAPVGPGSTNSLERRKEGSLPRPSTGLPSRQKPAPLPPAGSPHPPGSSQQIQQRISVPPSPTYPPAGLPAFPAGDGKPELPLTVAIRPFLADKGSRPQSPRKGPQTVNSSSIYSMYLQQATPPKNYQPAAHGTLNKSVKAVYGKPVLPSGSTSPSPLPFLHGSLATSTSQPQPPSESAEKEPEQDSPAPPGDGGGASTVESLPRPLSPTKLTPIVHSPLRYQSDADLEALRRKLANAPRPLKKRSSITEPEGPGGPNIQKLLYQRFNTLAGGMEGTPFYQPSPSQDFLGTLADVDNGNTTANGNLGEASPAPPTAPHPAEPAPASDANDNQLPSPEPEGLTCPPDTHQTAEPAEDDNNNVATAPSTEQVPSPGAEAPSPGEEQVLLSLPPAVPPPAVSTSKRTNLKKPNSERTGHGLRVRFNPLALLLDASLEGEFDLVQRVIYEVEDPSKPNDEGITPLHNAVCAGHHHIVRFLLDFGVNVNAADSDGWTPLHCAASCNSVHLCKQLVESGAAIFASTVSDIETAADKCEEMEEGYIQCSQFLYGVQEKLGVMNKGVVYALWAYDAQNSDELSFHEGDALTILRRKDESETDWWWARLGDREGYVPKNLLGLYPRIKPRQRTLA", "length": 1092, "header": "tr|F1S9X3-1|F1S9X3_PIG Isoform 1 of Protein phosphatase 1 regulatory subunit 13B OS=Sus scrofa OX=9823 GN=PPP1R13B PE=1 SV=3 CANONICAL=F1S9X3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZP43-1", "url": "https://www.uniprot.org/uniprotkb/F1S9X3/entry#A0A286ZP43-1", "sequence": { "sequence": "LLQMILTVFLSNNEQILTEVPVTPETTCRDVVEFCKEPGEGSCHLAEVWRGNERPIPFDYMMYEHLQKWGPRREEVKFFLRHEDSPTESSEQGGRQTQEQRTQRNVINVPGEKRAENGVGNPRVELTLSELQDMAARQQQQIENQQQMLVAKEQRLHFLKQQERRQQQSVSENEKLQKLKERVEAQENKLKKIRAMRGQVDYSKIMNGNLSAEIERFSAMFQEKKQEVQTAILRVDQLSQQLEDLKKGKLNGFQSYTGKLTGPAAVELKRLYQELQIRNQLNQEQNSKLQQQKELLSKRNMEVAVMDKRISELRERLYGKKIQLSRVNGTSSPQSPLSTPGRVAAVGPYIQVPSSGSYSVPGDPVKPQSLTVAPSAAHGRSKSANDGNWPTLKQNSGSSVKGTQIASVDWRDSSTEGPLKQGAVSSQPVPLPALGATEKLGLEMGKVPPPIPGVGKQPPPSYGTYPSPAPVGPGSTNSLERRKEGSLPRPSTGLPSRQKPAPLPPAGSPHPPGSSQQIQQRISVPPSPTYPPAGLPAFPAGDGKPELPLTVAIRPFLADKGSRPQSPRKGPQTVNSSSIYSMYLQQATPPKNYQPAAHGTLNKSVKAVYGKPVLPSGSTSPSPLPFLHGSLATSTSQPQPPSESAEKEPEQDSPAPPGDGGGASTVESLPRPLSPTKLTPIVHSPLRYQSDADLEALRRKLANAPRPLKKRSSITEPEGPGGPNIQKLLYQRFNTLAGGMEGTPFYQPSPSQDFLGTLADVDNGNTTANGNLGEASPAPPTAPHPAEPAPASDANDNQLPSPEPEGLTCPPDTHQTAEPAEDDNNNVATAPSTEQVPSPGAEAPSPGEEQVLLSLPPAVPPPAVSTSKRTNLKKPNSERTGHGLRVRFNPLALLLDASLEGEFDLVQRVIYEVEDPSKPNDEGITPLHNAVCAGHHHIVRFLLDFGVNVNAADSDGWTPLHCAASCNSVHLCKQLVESGAAIFASTVSDIETAADKCEEMEEGYIQCSQFLYVVSADQTPAAHARLNFPQEARSGLPATRSPRREDPAVSQEGRSWRWPDGAPSGRQHACEPQQFLGEAPAPLRPRWESRFSSRETELAVSAAPNK", "length": 1106, "header": "tr|A0A286ZP43-1|F1S9X3_PIG Computationally mapped isoform of Protein phosphatase 1 regulatory subunit 13B OS=Sus scrofa OX=9823 GN=PPP1R13B PE=1 SV=2 CANONICAL=F1S9X3-1" }, "locus": { "chromosome": "AEMK02000452.1", "start_pos": 2295652, "end_pos": 2238425, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047690.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047690.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033359.2", "url": "https://www.ensembl.org/id/ENSSSCP00000033359.2" } ] } }, { "isoform_ac": "A0A287BNQ1-1", "url": "https://www.uniprot.org/uniprotkb/F1S9X3/entry#A0A287BNQ1-1", "sequence": { "sequence": "LLQMILTVFLSNNEQILTEVPVTPETTCRDVVEFCKEPGEGSCHLAEVWRGNERPIPFDYMMYEHLQKWGPRREEVKFFLRHEDSPTESSEQGGRQTQEQRTQRNVINVPGEKRAENGEQRLHFLKQQERRQQQSVSENEKLQKLKERVEAQENKLKKIRAMRGQVDYSKIMNGNLSAEIERFSAMFQEKKQEVQTAILRVDQLSQQLEDLKKGKLNGFQSYTGKLTGPAAVELKRLYQELQIRNQLNQEQNSKLQQQKELLSKRNMEVAVMDKRISELRERLYGKKIQLSRVNGTSSPQSPLSTPGRVAAVGPYIQVPSSGSYSVPGDPVKPQSLTVAPSAAHGRSKSANDGNWPTLKQNSGSSVKGTQIASVDWRDSSTEGPLKQGAVSSQPVPLPALGATEKLGLEMGKVPPPIPGVGKQPPPSYGTYPSPAPVGPGSTNSLERRKEGSLPRPSTGLPSRQKPAPLPPAGSPHPPGSSQQIQQRISVPPSPTYPPAGLPAFPAGDGKPELPLTVAIRPFLADKGSRPQSPRKGPQTVNSSSIYSMYLQQATPPKNYQPAAHGTLNKSVKAVYGKPVLPSGSTSPSPLPFLHGSLATSTSQPQPPSESAEKEPEQDSPAPPGDGGGASTVESLPRPLSPTKLTPIVHSPLRYQSDADLEALRRKLANAPRPLKKRSSITEPEGPGGPNIQKLLYQRFNTLAGGMEGTPFYQPSPSQDFLGTLADVDNGNTTANGNLGEASPAPPTAPHPAEPAPASDANDNQLPSPEPEGLTCPPDTHQTAEPAEDDNNNVATAPSTEQVPSPGAEAPSPGEEQVLLSLPPAVPPPAVSTSKRTNLKKPNSERTGHGLRVRFNPLALLLDASLEGEFDLVQRVIYEVEDPSKPNDEGITPLHNAVCAGHHHIVRFLLDFGVNVNAADSDGWTPLHCAASCNSVHLCKQLVESGAAIFASTVSDIETAADKCEEMEEGYIQCSQFLYGVQEKLGVMNKGVVYALWAYDAQNSDELSFHEGDALTILRRKDESETDWWWARLGDREGYVPKNLLGVSTLSGTPEASCPWSAVPPCLPAGHTALGGARGEVLLGRRWPFSSPAGAVGRPAHPAEGCRATRSLAWGWGACRPLPELSDPPWAERGPCSPCCEPGACRSLTVTGMTGGWRSALRRGRPSWERGGPLEELVCSLLGEPPRSLASALVPWS", "length": 1196, "header": "tr|A0A287BNQ1-1|F1S9X3_PIG Computationally mapped isoform of Protein phosphatase 1 regulatory subunit 13B OS=Sus scrofa OX=9823 GN=PPP1R13B PE=1 SV=3 CANONICAL=F1S9X3-1" }, "locus": { "chromosome": "AEMK02000452.1", "start_pos": 2295652, "end_pos": 2238730, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056964.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056964.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058139.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058139.3" } ] } }, { "isoform_ac": "F1S9X3-1", "url": "https://www.uniprot.org/uniprotkb/F1S9X3/entry#F1S9X3-1", "sequence": { "sequence": "MMPMILTVFLSNNEQILTEVPVTPETTCRDVVEFCKEPGEGSCHLAEVWRGNERPIPFDYMMYEHLQKWGPRREEVKFFLRHEDSPTESSEQGGRQTQEQRTQRNVINVPGEKRAENGVGNPRVELTLSELQDMAARQQQQIENQQQMLVAKEQRLHFLKQQERRQQQSVSENEKLQKLKERVEAQENKLKKIRAMRGQVDYSKIMNGNLSAEIERFSAMFQEKKQEVQTAILRVDQLSQQLEDLKKGKLNGFQSYTGKLTGPAAVELKRLYQELQIRNQLNQEQNSKLQQQKELLSKRNMEVAVMDKRISELRERLYGKKIQLSRVNGTSSPQSPLSTPGRVAAVGPYIQVPSSGSYSVPGDPVKPQSLTVAPSAAHGRSKSANDGNWPTLKQNSGSSVKGTQIASVDWRDSSTEGPLKQGAVSSQPVPLPALGATEKLGLEMGKVPPPIPGVGKQPPPSYGTYPSPAPVGPGSTNSLERRKEGSLPRPSTGLPSRQKPAPLPPAGSPHPPGSSQQIQQRISVPPSPTYPPAGLPAFPAGDGKPELPLTVAIRPFLADKGSRPQSPRKGPQTVNSSSIYSMYLQQATPPKNYQPAAHGTLNKSVKAVYGKPVLPSGSTSPSPLPFLHGSLATSTSQPQPPSESAEKEPEQDSPAPPGDGGGASTVESLPRPLSPTKLTPIVHSPLRYQSDADLEALRRKLANAPRPLKKRSSITEPEGPGGPNIQKLLYQRFNTLAGGMEGTPFYQPSPSQDFLGTLADVDNGNTTANGNLGEASPAPPTAPHPAEPAPASDANDNQLPSPEPEGLTCPPDTHQTAEPAEDDNNNVATAPSTEQVPSPGAEAPSPGEEQVLLSLPPAVPPPAVSTSKRTNLKKPNSERTGHGLRVRFNPLALLLDASLEGEFDLVQRVIYEVEDPSKPNDEGITPLHNAVCAGHHHIVRFLLDFGVNVNAADSDGWTPLHCAASCNSVHLCKQLVESGAAIFASTVSDIETAADKCEEMEEGYIQCSQFLYGVQEKLGVMNKGVVYALWAYDAQNSDELSFHEGDALTILRRKDESETDWWWARLGDREGYVPKNLLGLYPRIKPRQRTLA", "length": 1092, "header": "tr|F1S9X3-1|F1S9X3_PIG Isoform 1 of Protein phosphatase 1 regulatory subunit 13B OS=Sus scrofa OX=9823 GN=PPP1R13B PE=1 SV=3 CANONICAL=F1S9X3-1" }, "locus": { "chromosome": "AEMK02000452.1", "start_pos": 2331303, "end_pos": 2238667, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002825.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002825.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002753.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002753.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 339, "start_aa": "Thr", "end_pos": 339, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr339", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 781, "start_aa": "Thr", "end_pos": 781, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr781", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZP43", "url": "https://www.uniprot.org/uniprotkb/A0A286ZP43" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6804759", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804759", "resource": "Reactome", "description": "Regulation of TP53 Activity through Association with Co-factors" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S9X3", "url": "https://www.uniprot.org/uniprotkb/F1S9X3" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S9X3", "url": "https://www.uniprot.org/uniprotkb/F1S9X3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S9X3", "url": "https://www.uniprot.org/uniprotkb/F1S9X3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S9X3", "url": "https://www.uniprot.org/uniprotkb/F1S9X3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1S9X3", "url": "https://www.uniprot.org/uniprotkb/F1S9X3" } ], "pmid": "" }, { "name": "regulation of apoptotic process", "id": "GO:0042981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042981", "evidence": [ { "database": "UniProtKB", "id": "F1S9X3", "url": "https://www.uniprot.org/uniprotkb/F1S9X3" } ], "pmid": "" }, { "name": "intrinsic apoptotic signaling pathway by p53 class mediator", "id": "GO:0072332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072332", "evidence": [ { "database": "UniProtKB", "id": "F1S9X3", "url": "https://www.uniprot.org/uniprotkb/F1S9X3" } ], "pmid": "" }, { "name": "negative regulation of cell cycle", "id": "GO:0045786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045786", "evidence": [ { "database": "UniProtKB", "id": "F1S9X3", "url": "https://www.uniprot.org/uniprotkb/F1S9X3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, 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"locus": { "chromosome": "14", "start_pos": 111301703, "end_pos": 111279968, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047409.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047409.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049431.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049431.2" } ] } }, { "isoform_ac": "F1S8V6-1", "url": "https://www.uniprot.org/uniprotkb/F1S8V6/entry#F1S8V6-1", "sequence": { "sequence": "MELLGITTLALMVCVTCLVFLSVWKKNHKRRRLPPGPTPLPIIGNLMQLNLKDIPASLSKLAKQYGPVCTVYFGSQPAVVLHGYEAVKEALIDQGDEFLGRGIIPIIDDTQGGYGLVFSNGERWKQIRRFSLMTLRNFGMGKRSLEERVQEEAQFLVEELRKTEAQPFDPTFILSCAPCNVICSILFNDRFHYDNETFLSLMNLLNANFRQISSPWIQIYNLWPQIIKHLPGEHRAFSKRLKDSRSFILEKVKEHQKSPNLNNPQDYIDCFLSKMEQEKQNPDSEFHLENLINSGSNLFAAGTETTTSTLRYGLLLLMKHPEVQAKVHEEIDRVIGRSQRPCMQDKMKLPYTEAVLHEIQRYIALLPSNLPHATVRDTKFREYIIPKGTTVLPLLSSVLHDCKEFPNPEKFDPGHFLDKDGSFRKTEYFVPFSIGKRACAGESLARMELFLFFTTILQHFVLKPLKEPKDLETKPISVGLFNLPPPFKLCLIPR", "length": 494, "header": "tr|F1S8V6-1|F1S8V6_PIG Isoform 1 of Cytochrome P450 family 2 subfamily C member 33 OS=Sus scrofa OX=9823 GN=CYP2C33 PE=1 SV=2 CANONICAL=F1S8V6-1" }, "locus": { "chromosome": "14", "start_pos": 111301703, "end_pos": 111269194, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011537.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011537.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011236.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011236.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 38, "start_aa": "Thr", "end_pos": 38, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr38", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZQA6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQA6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "F1S8V6", "url": "https://www.uniprot.org/uniprotkb/F1S8V6" } ], "pmid": "" }, { "name": "heme binding", "id": "GO:0020037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0020037", "evidence": [ { "database": "UniProtKB", "id": "F1S8V6", "url": "https://www.uniprot.org/uniprotkb/F1S8V6" } ], "pmid": "" }, { "name": "monooxygenase activity", "id": "GO:0004497", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004497", "evidence": [ { "database": "UniProtKB", "id": "F1S8V6", "url": "https://www.uniprot.org/uniprotkb/F1S8V6" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen", 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"MGRGPRAILALGLLFLRLAQANFAPHFFDNGVGSTNGNMALFSLPEDTPVGSHVYTLNGTDPEGNPVSYHISFDPSARSVFSVDPNFGTITLVEELDREREDEIEATISISDGLNLDILAGSSIAKVHAVDRDTGSGGSVTYFLQNPHSTKFAMDRHSGVLRLQPGATLDYEKARTHFVTVVAKDGGGRLRGADVVFSATATVTVNVEDVQDMAPVFVGTPYYGYVYEDTLPGSEVLTVVAMDGDQGKPNRILYSLMNGSDGAFEINETSGAIYVMQSPAQLRRDVYELHVQVTEVSSAGTPAAQAMVPVTIRIVDLNNHPPTFYGESGPQNRFELSMYEHPPQGEILRGLKITVNDSDQGANAKFNLRLVGPGGIFRVVPQTVLNEAQVTIIVENSAAIDFEKFKVLTFKLLAIEVNTPEKFSSTADVVIQLLDTNDNVPKFTSHYYVARIPENAPGGSNVVAVTAVDPDTGPWGEVKYSIYGSGADYFLIHSSSGMIYTQPWASLDAEATTRYNFYVKAEDMEGKYSLAEVFVTLLDVNDHYPQFGKRVQEKTMVLGTPVKIEATDQDAEEPNNLVDYSITHAEPANVFDIDAHTGEIRLKNSIRSLDALHNITPNGDRTWSLEVQAKDRGSPSFSTTALLRIDIVDTEMQSRSPMAAFLMQTKDNPMKAVGVLAGIMAIIVAITVLISTASFWRNKKSNKVLPVRRVLRKRPSPAPRTVRIKWLKFGRTKAADKFVLREDRPNENCNNNSLGSTPPPTAPAPPPPPSMGPAHWTVPTVSGSLAPRQPPRSPKPKAVGSPVQSALVSELRQKFEKKNVHNKAYF", "length": 826, "header": "tr|F1SEP9-1|F1SEP9_PIG Isoform 1 of Cadherin-related family member 1 OS=Sus scrofa OX=9823 GN=CDHR1 PE=1 SV=3 CANONICAL=F1SEP9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZV14-1", "url": "https://www.uniprot.org/uniprotkb/F1SEP9/entry#A0A286ZV14-1", "sequence": { "sequence": "MGRGPRAILALGLLFLRLAQANFAPHFFDNGVGSTNGNMALFSLPEDTPVGSHVYTLNGTDPEGNPVSYHISFDPSARSVFSVDPNFGTITLVEELDREREDEIEATISISDGLNLNPHSTKFAMDRHSGVLRLQPGATLDYEKARTHFVTVVAKDGGGRLRGADVVFSATATVTVNVEDVQDMAPVFVGTPYYGYVYEDTLPGSEVLTVVAMDGDQGKPNRILYSLMNGSDGAFEINETSGAIYVMQSPAQLRRDVYELHVQVTEVSSAGTPAAQAMVPVTIRIVDLNNHPPTFYGESGPQNRFELSMYEHPPQGEILRGLKITVNDSDQGANAKFNLRLVGPGGIFRVVPQTVLNEAQVTIIVENSAAIDFEKFKVLTFKLLAIEVNTPEKFSSTADVVIQLLDTNDNVPKFTSHYYVARIPENAPGGSNVVAVTAVDPDTGPWGEVKYSIYGSGADYFLIHSSSGMIYTQPWASLDAEATTRYNFYVKAEDMEGKYSLAEVFVTLLDVNDHYPQFGKRVQEKTMVLGTPVKIEATDQDAEEPNNLVDYSITHAEPANVFDIDAHTGEIRLKNSIRSLDALHNITPNGDRTWSLEVQAKDRGSPSFSTTALLRIDIVDTEMQSRSPMAAFLMQTKDNPMKAVGVLAGIMAIIVAITVLISTASFWRNKKSNKVLPVRRVLRKRPSPAPRTVRIKWLKFGRTKAADKFVLREDRPNENCNNNSLGSTPPPTAPAPPPPPSMGPAHWTVPTVSGSLAPRQPPRSPKPKAVGSPVQSALVSELRQKFEKKNVHNKAYF", "length": 797, "header": "tr|A0A286ZV14-1|F1SEP9_PIG Computationally mapped isoform of Cadherin-related family member 1 OS=Sus scrofa OX=9823 GN=CDHR1 PE=1 SV=1 CANONICAL=F1SEP9-1" }, "locus": { "chromosome": "14", "start_pos": 85452266, "end_pos": 85430218, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040064.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040064.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035476.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035476.1" } ] } }, { "isoform_ac": "A0A287BL69-1", "url": "https://www.uniprot.org/uniprotkb/F1SEP9/entry#A0A287BL69-1", "sequence": { "sequence": "MGRGPRAILALGLLFLRLAQANFAPHFFDNGVGSTNGNMALFSLPEDTPVGSHVYTLNGTDPEGNPVSYHISFDPSARSVFSVDPNFGTITLVEELDREREDEIEATISISDGLNLVAEKVTILVTDANDEAPRFIQEPYVVQVPEDILAGSSIAKVHAVDRDTGSGGSVTYFLQNPHSTKFAMDRHSGVLRLQPGATLDYEKARTHFVTVVAKDGGGRLRGADVVFSATATVTVNVEDVQDMAPVFVGTPYYGYVYEDTLPGSEVLTVVAMDGDQGKPNRILYSLMNGSDGAFEINETSGAIYVMQSPAQLRRDVYELHVQVTEVSSAGTPAAQAMVPVTIRIVDLNNHPPTFYGESGPQNRFELSMYEHPPQGEILRGLKITVNDSDQGANAKFNLRLVGPGGIFRVVPQTVLNEAQVTIIVENSAAIDFEKFKVLTFKAVDPDTGPWGEVKYSIYGSGADYFLIHSSSGMIYTQPWASLDAEATTRYNFYVKAEDMEGKYSLAEVFVTLLDVNDHYPQFGKRVQEKTMVLGTPVKIEATDQDAEEPNNLVDYSITHAEPANVFDIDAHTGEIRLKNSIRSLDALHNITPNGDRTWSLEVQAKDRGSPSFSTTALLRIDIVDTEMQSRSPMAAFLMQTKDNPMKAVGVLAGIMAIIVAITVLISTASFWRNKKSNKVLPVRRVLRKRPSPAPRTVRIKWLKFGRTKAADKFVLREDRPNENCNNNSLGSTPPPTAPAPPPPPSMGPAHWTVPTVSGSLAPRQPPRSPKPKAVGSPVQSALVSELRQKFEKKNVHNKAYF", "length": 801, "header": "tr|A0A287BL69-1|F1SEP9_PIG Computationally mapped isoform of Cadherin-related family member 1 OS=Sus scrofa OX=9823 GN=CDHR1 PE=1 SV=1 CANONICAL=F1SEP9-1" }, "locus": { "chromosome": "14", "start_pos": 85452266, "end_pos": 85430218, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057941.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057941.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056819.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056819.1" } ] } }, { "isoform_ac": "A0A5G2R5P6-1", "url": "https://www.uniprot.org/uniprotkb/F1SEP9/entry#A0A5G2R5P6-1", "sequence": { "sequence": "MGRGPRAILALGLLFLRLGSHVYTLNGTDPEGNPVSYHISFDPSARSVFSVDPNFGTITLVEELDREREDEIEATISISDGLNLVAEKVTILVTDANDEAPRFIQEPYVVQVPEDILAGSSIAKVHAVDRDTGSGGSVTYFLQNPHSTKFAMDRHSGVLRLQPGATLDYEKARTHFVTVVAKDGGGRLRGADVVFSATATVTVNVEDVQDMAPVFVGTPYYGYVYEDTLPGSEVLTVVAMDGDQGKPNRILYSLMNGSDGAFEINETSGAIYVMQSPAQLRRDVYELHVQVTEVSSAGTPAAQAMVPVTIRIVDLNNHPPTFYGESGPQNRFELSMYEHPPQGEILRGLKITVNDSDQGANAKFNLRLVGPGGIFRVVPQTVLNEAQVTIIVENSAAIDFEKFKVLTFKLLAIEVNTPEKFSSTADVVIQLLDTNDNVPKFTSHYYVARIPENAPGGSNVVAVTAVDPDTGPWGEVKYSIYGSGADYFLIHSSSGMIYTQPWASLDAEATTRYNFYVKAEDMEGKYSLAEVFVTLLDVNDHYPQFGKRVQEKTMVLGTPVKIEATDQDAEEPNNLVDYSITHAEPANVFDIDAHTGEIRLKNSIRSLDALHNITPNGDRTWSLEVQAKDRGSPSFSTTALLRIDIVDTEMQSRSPMAAFLMQTKDNPMKAVGVLAGIMAIIVAITVLISTASFWRNKKSNKVLPVRRVLRKRPSPAPRTVRIKWLKFGRTKAADKFVLREDRPNENCNNNSLGSTPPPTAPAPPPPPSMGPAHWTVPTVSGSLAPRQPPRSPKPKAVGSPVQSALVSELRQKFEKKNVHNKAYF", "length": 824, "header": "tr|A0A5G2R5P6-1|F1SEP9_PIG Computationally mapped isoform of Cadherin-related family member 1 OS=Sus scrofa OX=9823 GN=CDHR1 PE=1 SV=1 CANONICAL=F1SEP9-1" }, "locus": { "chromosome": "14", "start_pos": 85452266, "end_pos": 85430218, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079884.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079884.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072566.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072566.1" } ] } }, { "isoform_ac": "F1SEP9-1", "url": "https://www.uniprot.org/uniprotkb/F1SEP9/entry#F1SEP9-1", "sequence": { "sequence": "MGRGPRAILALGLLFLRLAQANFAPHFFDNGVGSTNGNMALFSLPEDTPVGSHVYTLNGTDPEGNPVSYHISFDPSARSVFSVDPNFGTITLVEELDREREDEIEATISISDGLNLDILAGSSIAKVHAVDRDTGSGGSVTYFLQNPHSTKFAMDRHSGVLRLQPGATLDYEKARTHFVTVVAKDGGGRLRGADVVFSATATVTVNVEDVQDMAPVFVGTPYYGYVYEDTLPGSEVLTVVAMDGDQGKPNRILYSLMNGSDGAFEINETSGAIYVMQSPAQLRRDVYELHVQVTEVSSAGTPAAQAMVPVTIRIVDLNNHPPTFYGESGPQNRFELSMYEHPPQGEILRGLKITVNDSDQGANAKFNLRLVGPGGIFRVVPQTVLNEAQVTIIVENSAAIDFEKFKVLTFKLLAIEVNTPEKFSSTADVVIQLLDTNDNVPKFTSHYYVARIPENAPGGSNVVAVTAVDPDTGPWGEVKYSIYGSGADYFLIHSSSGMIYTQPWASLDAEATTRYNFYVKAEDMEGKYSLAEVFVTLLDVNDHYPQFGKRVQEKTMVLGTPVKIEATDQDAEEPNNLVDYSITHAEPANVFDIDAHTGEIRLKNSIRSLDALHNITPNGDRTWSLEVQAKDRGSPSFSTTALLRIDIVDTEMQSRSPMAAFLMQTKDNPMKAVGVLAGIMAIIVAITVLISTASFWRNKKSNKVLPVRRVLRKRPSPAPRTVRIKWLKFGRTKAADKFVLREDRPNENCNNNSLGSTPPPTAPAPPPPPSMGPAHWTVPTVSGSLAPRQPPRSPKPKAVGSPVQSALVSELRQKFEKKNVHNKAYF", "length": 826, "header": "tr|F1SEP9-1|F1SEP9_PIG Isoform 1 of Cadherin-related family member 1 OS=Sus scrofa OX=9823 GN=CDHR1 PE=1 SV=3 CANONICAL=F1SEP9-1" }, "locus": { "chromosome": "14", "start_pos": 85452266, "end_pos": 85430218, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011329.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011329.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011036.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011036.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 301, "start_aa": "Thr", "end_pos": 301, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr301", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 761, "start_aa": "Thr", "end_pos": 761, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr761", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZV14", "url": "https://www.uniprot.org/uniprotkb/A0A286ZV14" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SEP9", "url": "https://www.uniprot.org/uniprotkb/F1SEP9" } ], "pmid": "" }, { "name": "photoreceptor outer segment membrane", "id": "GO:0042622", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042622", "evidence": [ { "database": "UniProtKB", "id": "F1SEP9", "url": 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"mass": { "chemical_mass": 85255.0, "monoisotopic_mass": 85255.0 }, "refseq": { "ac": "XP_013835803", "name": "transient receptor potential cation channel subfamily V member 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013835803" }, "gene_names": [ { "name": "TRPV2", "type": "recommended", "evidence": [ { "id": "F1SDE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDE4" } ] }, { "name": "TRPV2", "type": "synonym", "evidence": [ { "id": "XP_013835803", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013835803" } ] } ], "protein_names": [ { "name": "Transient receptor potential cation channel subfamily V member 2", "type": "synonym", "evidence": [ { "id": "F1SDE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDE4/entry#names_and_taxonomy" } ] }, { "name": "transient receptor potential cation channel subfamily V member 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_013835803", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013835803" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDE4", "url": "https://www.uniprot.org/uniprotkb/F1SDE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRPV2", "url": "https://www.uniprot.org/uniprotkb/F1SDE4", "locus": { "chromosome": "12", "start_pos": 59135329, "end_pos": 59152228, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000018032", "url": "https://www.ensembl.org/id/ENSSSCG00000018032" } ] } } ], "crossref": [ { "id": "F1SDE4", "url": "https://alphafold.ebi.ac.uk/entry/F1SDE4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000018032", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000018032", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523638", "url": "https://www.ncbi.nlm.nih.gov/gene/100523638", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024862", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024862", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523638", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523638", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WRRHVFI", "url": "https://omabrowser.org/oma/group/WRRHVFI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A0Z9", "url": "https://www.orthodb.org/?gene=A0A287A0Z9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SDE4", "url": "https://www.orthodb.org/?gene=F1SDE4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10582", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10582", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10582:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10582:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3295583", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3295583", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013835803", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013835803", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "29671", "url": "https://www.rhea-db.org/rhea/29671", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A0Z9", "url": "https://www.uniprot.org/uniprotkb/A0A287A0Z9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A0Z9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0Z9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AV23", "url": "https://www.uniprot.org/uniprotkb/A0A287AV23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AV23-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV23-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDE4", "url": "https://www.uniprot.org/uniprotkb/F1SDE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDE4-1", "url": "https://www.uniprot.org/uniprotkb/F1SDE4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASPSSPPAFRLETSDRSREDGAERDRGQPGGGARPPPMESAFQPEDRMFPPQITVDLHYRKRAGASQPDPNRFDRDRLFRVVARGVPEDLAGLPEYLRRTSKYLTDTEYREGSTGKTCLMKAVLNLRDGANACIQPLLQIDRDSGNPQPLVNAQCTDAYYRGHSALHIAIEKRSLPCVKLLVENGADVHARACGQFFQKKSQDPCFYFGELPLSLAVCTKQWDVVTYLLENPHQSASPQAADSLGNTALHALVAIADNSVKNTELVTLMYDKLLQAVARLYPTVRLEDIPNLQGLTPLQLAAKEGKIEIFRHILQREFPGPCQSLSRKFTEWSYGPVRVSLYDLASVDSWEENSVLEIIAFHCRSSDRHRMVVLEPLNKLLQEKWNLLTPRFLINFLCYLIYVSVLTAVTYHQPALEKDLLTLGNSTLLLGHILILLTGAYLLMGQLWYFWRRRLFIWTSFVDSYFEILFLVQALLAVLSQVLCFLAVKWYLPLLVSSLVLGWLNLLYYTRGLQHTGIYSVMIQKVILRDLLRFLLVYLVFLFGFAVALVSLSREAQALGAPLGSNATEAAGEGDKEGSEALYKGILDASLELFKFTIGMGELAFQEQLRFRGVVLVLLLAYVLLTYVLLLNMLIALMSETVNSVAHDSWSIWKLQKAICVLEMEKGYWWCRRKKQRAGVKLTVGTRPDGSPDERWCFRVEEVNWAAWEQTLPTVCEEPSGPPGSSGDTNEPLASQPSQDSVTEEDNVPLQPLESR", "length": 757, "header": "tr|F1SDE4-1|F1SDE4_PIG Isoform 1 of Transient receptor potential cation channel subfamily V member 2 OS=Sus scrofa OX=9823 GN=TRPV2 PE=1 SV=3 CANONICAL=F1SDE4-1" }, "isoforms": [ { "isoform_ac": "A0A287A0Z9-1", "url": "https://www.uniprot.org/uniprotkb/F1SDE4/entry#A0A287A0Z9-1", "sequence": { "sequence": "MASPSSPPAFRLETSDRSREDGAERDRGQPGGGARPPPMESAFQPEDRMFPPQITVDLHYRKRAGASQPDPNRFDRDRLFRVVARGVPEDLAGLPEYLRRTSKYLTDTEYREGSTGKTCLMKAVLNLRDGANACIQPLLQIDRDSGNPQPLVNAQCTDAYYRGHSALHIAIEKRSLPCVKLLVENGADVHARACGQFFQKKSQDPCFYFGELPLSLAVCTKQWDVVTYLLENPHQSASPQAADSLGNTALHALVAIADNSVKNTELVTLMYDKLLQAVARLYPTVRLEDIPNLQGLTPLQLAAKEGKIEIFRHILQREFPGPCQSLSRKFTEWSYGPVRVSLYDLASVDSWEENSVLEIIAFHCRSSVSPRRRAWQGSCWAAPALPLWLPLSTWLLGTHPLPARVPVATTGASLLTSTSSGLATPRPQGGVGAGGEGSLGAPSSPLNPRIYWGAAPLAPPFPSQDRHRMVVLEPLNKLLQEKWNLLTPRFLINFLCYLIYVSVLTAVTYHQPALEKDLLTLGNSTLLLGHILILLTGAYLLMGQLWYFWRRRLFIWTSFVDSYFEILFLVQALLAVLSQVLCFLAVKWYLPLLVSSLVLGWLNLLYYTRGLQHTGIYSVMIQKVILRDLLRFLLVYLVFLFGFAVALVSLSREAQALGAPLGSNATEAAGEGDKEGSEALYKGILDASLELFKFTIGMGELAFQEQLRFRGVVLVLLLAYVLLTYVLLLNMLIALMSETVNSVAHDSWSIWKLQKAICVLEMEKGYWWCRRKKQRAGVKLTVGTRPDGSPDERWCFRVEEVNWAAWEQTLPTVCEEPSGPPGSSGDTNEPLASQPSQDSVTEEDNVPLQPLESR", "length": 854, "header": "tr|A0A287A0Z9-1|F1SDE4_PIG Computationally mapped isoform of Transient receptor potential cation channel subfamily V member 2 OS=Sus scrofa OX=9823 GN=TRPV2 PE=1 SV=1 CANONICAL=F1SDE4-1" }, "locus": { "chromosome": "12", "start_pos": 59150725, "end_pos": 59135996, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063250.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063250.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037425.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037425.1" } ] } }, { "isoform_ac": "A0A287AV23-1", "url": "https://www.uniprot.org/uniprotkb/F1SDE4/entry#A0A287AV23-1", "sequence": { "sequence": "MASPSSPPAFRLETSDRSREDGAERDRGQPGGGARPPPMESAFQPEDRMFPPQITVDLHYRKRAGASQPDPNRFDRDRLFRVVARGVPEDLAGLPEYLRRTSKYLTDTEYREGSTGKTCLMKAVLNLRDGANACIQPLLQIDRDSGNPQPLVNAQCTDAYYRGHSALHIAIEKRSLPCVKLLVENGADVHARACGQFFQKKSQDPCFYFGELPLSLAVCTKQWDVVTYLLENPHQSASPQAADSLGNTALHALVAIADNSVKNTELVTLMYDKLLQAVARLYPTVRLEDIPNLQGLTPLQLAAKEGKIEIFRHILQREFPGPCQSLSRKFTEWSYGPVRVSLYDLASVDSWEENSVLEIIAFHCRSSDRHRMVVLEPLNKLLQEKWNLLTPRFLINFLCYLIYVSVLTAVTYHQPALEKDLLTLGNSTLLLGHILILLTGAYLLMGQLWYFWRRRLFIWTSFVDSYFEILFLVQALLAVLSQVLCFLAVKWYLPLLVSSLVLGWLNLLYYTRGLQHTGIYSVMIQKKAICVLEMEKGYWWCRRKKQRAGVKLTVGTRPDGSPDERWCFRVEEVNWAAWEQTLPTVCEEPSGPPGSSGDTNEPLASQPSQDSVTEEDNVPLQPLESR", "length": 626, "header": "tr|A0A287AV23-1|F1SDE4_PIG Computationally mapped isoform of Transient receptor potential cation channel subfamily V member 2 OS=Sus scrofa OX=9823 GN=TRPV2 PE=1 SV=1 CANONICAL=F1SDE4-1" }, "locus": { "chromosome": "12", "start_pos": 59150725, "end_pos": 59135996, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038914.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038914.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047957.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047957.1" } ] } }, { "isoform_ac": "F1SDE4-1", "url": "https://www.uniprot.org/uniprotkb/F1SDE4/entry#F1SDE4-1", "sequence": { "sequence": "MASPSSPPAFRLETSDRSREDGAERDRGQPGGGARPPPMESAFQPEDRMFPPQITVDLHYRKRAGASQPDPNRFDRDRLFRVVARGVPEDLAGLPEYLRRTSKYLTDTEYREGSTGKTCLMKAVLNLRDGANACIQPLLQIDRDSGNPQPLVNAQCTDAYYRGHSALHIAIEKRSLPCVKLLVENGADVHARACGQFFQKKSQDPCFYFGELPLSLAVCTKQWDVVTYLLENPHQSASPQAADSLGNTALHALVAIADNSVKNTELVTLMYDKLLQAVARLYPTVRLEDIPNLQGLTPLQLAAKEGKIEIFRHILQREFPGPCQSLSRKFTEWSYGPVRVSLYDLASVDSWEENSVLEIIAFHCRSSDRHRMVVLEPLNKLLQEKWNLLTPRFLINFLCYLIYVSVLTAVTYHQPALEKDLLTLGNSTLLLGHILILLTGAYLLMGQLWYFWRRRLFIWTSFVDSYFEILFLVQALLAVLSQVLCFLAVKWYLPLLVSSLVLGWLNLLYYTRGLQHTGIYSVMIQKVILRDLLRFLLVYLVFLFGFAVALVSLSREAQALGAPLGSNATEAAGEGDKEGSEALYKGILDASLELFKFTIGMGELAFQEQLRFRGVVLVLLLAYVLLTYVLLLNMLIALMSETVNSVAHDSWSIWKLQKAICVLEMEKGYWWCRRKKQRAGVKLTVGTRPDGSPDERWCFRVEEVNWAAWEQTLPTVCEEPSGPPGSSGDTNEPLASQPSQDSVTEEDNVPLQPLESR", "length": 757, "header": "tr|F1SDE4-1|F1SDE4_PIG Isoform 1 of Transient receptor potential cation channel subfamily V member 2 OS=Sus scrofa OX=9823 GN=TRPV2 PE=1 SV=3 CANONICAL=F1SDE4-1" }, "locus": { "chromosome": "12", "start_pos": 59150725, "end_pos": 59135996, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019627.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019627.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019107.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019107.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A0Z9", "url": "https://www.uniprot.org/uniprotkb/A0A287A0Z9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523638", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523638", "resource": "KEGG Pathway" }, { "id": "R-SSC-3295583", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3295583", "resource": "Reactome", "description": "TRP channels" } ], "orthologs": [ { "uniprot_canonical_ac": "Q9WTR1-1", "protein_name": "Transient receptor potential cation channel subfamily V member 2", "gene_name": "Trpv2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSASNPPAFRLETSDGDEEGSAEVNKGKNEPPPMESPFQGEDRNFSPQIKVNLNYRKGLGPSQQDPNRFDRDRLFSVVSRGVPEELTGLLEYLRRTSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACILPLLQIDRDSGNPQPLVNAQCTDEFYRGHSALHIAIEKRSLWCVKLLVENGANVHIRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDSLLQMGARLCPTVQLEDICNHQGLTPLKLAAKEGKIEIFRHILQREFSGLYQPLSRKFTEWCYGPVRVSLYDLSSVDSWEKNSVLEIIAFHCKSPHRHRMVVLEPLNKLLQEKWDRLIPRFFFNFACYLVYMIIFTIVAYHQPSLEQPAIPSSKATFGDSMLLLGHILILLGGIYLLLGQLWYFWRRRLFIWISFMDSYFEILFLVQALLTVLSQVLRFVETEWYLPLLVSSLVLGWLNLLYYTRGFQHTGIYSVMIQKVILRDLLRFLLVYLVFLFGFAVALVSLSREARSPKAPEDSNTTVTEKPTLGQEEEPVPYGGILDASLELFKFTIGMGELAFQEQLRFRGVVLLLLLAYVLLTYVLLLNMLIALMSETVNSVATDSWSIWKLQKAISVLEMENGYWWCRRKRHRAGRLLKVGTKGDGIPDERWCFRVEEVNWAAWEKTLPTLSEDPSGAGITGYKKNPTSKPGKNSASEEDHLPLQVLQSH", "length": 756 }, "evidence": [ { "id": "F1SDE4", "url": "https://omabrowser.org/oma/group/F1SDE4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WUD2-1", "protein_name": "Transient receptor potential cation channel subfamily V member 2", "gene_name": "Trpv2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTSASSPPAFRLETSDGDEEGNAEVNKGKQEPPPMESPFQREDRNSSPQIKVNLNFIKRPPKNTSAPSQQEPDRFDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKLLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGPYQPLSRKFTEWCYGPVRVSLYDLSSVDSWEKNSVLEIIAFHCKSPNRHRMVVLEPLNKLLQEKWDRLVSRFFFNFACYLVYMFIFTVVAYHQPSLDQPAIPSSKATFGESMLLLGHILILLGGIYLLLGQLWYFWRRRLFIWISFMDSYFEILFLLQALLTVLSQVLRFMETEWYLPLLVLSLVLGWLNLLYYTRGFQHTGIYSVMIQKVILRDLLRFLLVYLVFLFGFAVALVSLSREARSPKAPEDNNSTVTEQPTVGQEEEPAPYRSILDASLELFKFTIGMGELAFQEQLRFRGVVLLLLLAYVLLTYVLLLNMLIALMSETVNHVADNSWSIWKLQKAISVLEMENGYWWCRRKKHREGRLLKVGTRGDGTPDERWCFRVEEVNWAAWEKTLPTLSEDPSGPGITGNKKNPTSKPGKNSASEEDHLPLQVLQSP", "length": 761 }, "evidence": [ { "id": "F1SDE4", "url": "https://omabrowser.org/oma/group/F1SDE4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9Y5S1-1", "protein_name": "Transient receptor potential cation channel subfamily V member 2", "gene_name": "TRPV2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSPSSSPVFRLETLDGGQEDGSEADRGKLDFGSGLPPMESQFQGEDRKFAPQIRVNLNYRKGTGASQPDPNRFDRDRLFNAVSRGVPEDLAGLPEYLSKTSKYLTDSEYTEGSTGKTCLMKAVLNLKDGVNACILPLLQIDRDSGNPQPLVNAQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLHALVMISDNSAENIALVTSMYDGLLQAGARLCPTVQLEDIRNLQDLTPLKLAAKEGKIEIFRHILQREFSGLSHLSRKFTEWCYGPVRVSLYDLASVDSCEENSVLEIIAFHCKSPHRHRMVVLEPLNKLLQAKWDLLIPKFFLNFLCNLIYMFIFTAVAYHQPTLKKQAAPHLKAEVGNSMLLTGHILILLGGIYLLVGQLWYFWRRHVFIWISFIDSYFEILFLFQALLTVVSQVLCFLAIEWYLPLLVSALVLGWLNLLYYTRGFQHTGIYSVMIQKVILRDLLRFLLIYLVFLFGFAVALVSLSQEAWRPEAPTGPNATESVQPMEGQEDEGNGAQYRGILEASLELFKFTIGMGELAFQEQLHFRGMVLLLLLAYVLLTYILLLNMLIALMSETVNSVATDSWSIWKLQKAISVLEMENGYWWCRKKQRAGVMLTVGTKPDGSPDERWCFRVEEVNWASWEQTLPTLCEDPSGAGVPRTLENPVLASPPKEDEDGASEENYVPVQLLQSN", "length": 764 }, "evidence": [ { "id": "F1SDE4", "url": "https://omabrowser.org/oma/group/F1SDE4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular 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"database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003482264", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482264", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A149", "url": "https://www.uniprot.org/uniprotkb/A0A287A149", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A149-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A149-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1USH9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1USH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USH9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UTV6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UTV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTV6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAPSVSSLSESLPVQCTDGSVPEAQSTLDSTSSSLQPSPVPNQSLLSESVASSQVDSTSVDKAIPETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI", "length": 208, "header": "tr|A0A4X1USH9-1|A0A4X1USH9_PIG Isoform 1 of AN1-type zinc finger protein 6 OS=Sus scrofa OX=9823 GN=ZFAND6 PE=4 SV=1 CANONICAL=A0A4X1USH9-1" }, "isoforms": [ { "isoform_ac": "A0A287A149-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USH9/entry#A0A287A149-1", "sequence": { "sequence": "MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPDEVLAGSGYRITNTRYGPVTAPSVSSLSESLPVQCTDGSVPEAQSTLDSTSSSLQPSPVPNQSLLSESVASSQVDSTSVDKAIPETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI", "length": 228, "header": "tr|A0A287A149-1|A0A4X1USH9_PIG Computationally mapped isoform of AN1-type zinc finger protein 6 OS=Sus scrofa OX=9823 GN=ZFAND6 PE=4 SV=1 CANONICAL=A0A4X1USH9-1" }, "locus": { "chromosome": "7", "start_pos": 49033934, "end_pos": 49019225, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043845.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043845.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037649.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037649.2" } ] } }, { "isoform_ac": "A0A4X1USH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USH9/entry#A0A4X1USH9-1", "sequence": { "sequence": "MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAPSVSSLSESLPVQCTDGSVPEAQSTLDSTSSSLQPSPVPNQSLLSESVASSQVDSTSVDKAIPETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI", "length": 208, "header": "tr|A0A4X1USH9-1|A0A4X1USH9_PIG Isoform 1 of AN1-type zinc finger protein 6 OS=Sus scrofa OX=9823 GN=ZFAND6 PE=4 SV=1 CANONICAL=A0A4X1USH9-1" }, "locus": { "chromosome": "7", "start_pos": 49033934, "end_pos": 49019225, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062071.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062071.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049689.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049689.1" } ] } }, { "isoform_ac": "A0A4X1UTV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USH9/entry#A0A4X1UTV6-1", "sequence": { "sequence": "MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAPSVSSLSESLPVQCTDGSVPEAQSTLDSTSSSLQPSPVPNQSLLSESVASSQVDSTSVDKAIPETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGKGLNHMFKVKILDEA", "length": 175, "header": "tr|A0A4X1UTV6-1|A0A4X1UTV6_PIG Computationally mapped isoform of Zinc finger AN1-type containing 6 OS=Sus scrofa OX=9823 GN=ZFAND6 PE=4 SV=1 CANONICAL=A0A4X1USH9-1" }, "locus": { "chromosome": "7", "start_pos": 49031463, "end_pos": 49019225, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001994.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001994.5" }, { "database": "Ensembl Peptide", 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA16", "url": "https://www.uniprot.org/uniprotkb/A0A287AA16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA16-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA59", "url": "https://www.uniprot.org/uniprotkb/A0A287AA59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA59-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AN16", "url": "https://www.uniprot.org/uniprotkb/A0A287AN16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AN16-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AN16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B3Q7", "url": "https://www.uniprot.org/uniprotkb/A0A287B3Q7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B3Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3Q7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T8U6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8U6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T8U6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T8U6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBP9", "url": "https://www.uniprot.org/uniprotkb/F1SBP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBP9-1", "url": "https://www.uniprot.org/uniprotkb/F1SBP9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSKFNCRQLREMGQRFEDFLVAEGLDMETDRERLRTIYNRDFKTSFGNPTPGFSSMLYGMKIANLAYVTRTRVRFFKLDHWADVWFPEKRRMKLGSEISKHHRSLLAKIFYDRAEYLHGKHGVDVEVQGPHEARDGQLLIRLDLNRKEVLTLRLRNGGTQPVTLTHLFPLCRTPQFAFYNGDQELPCPLGPGESYELHVHCKTSFVGYFPATVLWELLGPGEPGSEGAGTFYIARFLAGVAHSPLAAQLKPTTPFKRTQITGNPVVTNRVEEGERPDRSRNYDLELSMALGTYCPPLRLRQLLPILLQGTNIFTAPKEIAEIKAQLEAALKWRNYEVKLRLLLHLEELQMEHDIRHYDLESVPMTWDPIDQNPRLLTLEVPGVAESRPSVLRGDHLFAVLSSETHQEDAVTYKGFVHRVELDRVKLSFSASLLDRFVDGLTFKVNFTFNRQPLRVQHRALELTGRWPLWPMLFPVASRGVPLLPSDVKLKLYDRSLESNPEQLQAMKHIVMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAPSRDIRLVPEDIKPCCNWDAQKGDYVFPAKKKLQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHSMEPESLVAIAGLLEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTYNALYKKGPDGYNPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRERFCRWEGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLTSSSKKGKARLSPRSVGVISPYRKQVEKIRHCITKLDKELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKAFLEFCKENGGYTGCPFPAKLDLQQGQNLLQGLSKLSPSTSGPRSHNYLPQEGEGGLPLQVEPEWRNEL", "length": 1001, "header": "tr|F1SBP9-1|F1SBP9_PIG Isoform 1 of RNA helicase OS=Sus scrofa OX=9823 GN=MOV10 PE=1 SV=2 CANONICAL=F1SBP9-1" }, "isoforms": [ { "isoform_ac": "A0A287A584-1", "url": "https://www.uniprot.org/uniprotkb/F1SBP9/entry#A0A287A584-1", "sequence": { "sequence": "MTGLFFSEVHRPPPAVQNQPYFGGEVLSASPETLKILSVPILSLCPGPVLPHTEWPSDAVPSLPAAVPHSPVSSAPGSFGNPTPGFSSMLYGMKIANLAYVTRTRVRFFKLDHWADVWFPEKRRMKLGSEISKHHRAEYLHGKHGVDVEVQGPHEARDGQLLIRLDLNRKEVLTLRLRNGGTQPVTLTHLFPLCRTPQFAFYNGDQELPCPLGPGEWVSKGKSPWRRAYPRKKHALAGQWAPALARSCLGAVPRLGMLVGGSLRHADSRSRPPPGESYELHVHCKTSFVGYFPATVLWELLGPGEPGSEGAGTFYIARFLAGVAHSPLAAQLKPTTPFKRTQITGNPVVTNRVEEGERPDRSRNYDLELSMALGTYCPPLRLRQLLPILLQGTNIFTAPKEIAEIKAQLEAALKWRNYEVKLRLLLHLEELQMEHDIRHYDLESVPMTWDPIDQNPRLLTLEVPGVAESRPSVLRGDHLFAVLSSETHQEDAVTYKGFVHRVELDRVKLSFSASLLDRFVDGLTFKVNFTFNRQPLRVQHRALELTGRWPLWPMLFPVASRGVPLLPSDVKLKLYDRSLESNPEQLQAMKHIVMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAPSRDIRLVPEDIKPCCNWDAQKGDYVFPAKKKLQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHSMEPESLVAIAGLLEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTYNALYKKGPDGYNPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRERFCRWEGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLTSSSKKGKARLSPRSVGVISPYRKQVEKIRHCITKLDKELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKAFLEFCKENGGYTGCPFPAKLDLQQGQNLLQGLSKLSPSTSGPRSHNYLPQEGEGGLPLQVEPEWRNEL", "length": 1083, "header": "tr|A0A287A584-1|F1SBP9_PIG Computationally mapped isoform of RNA helicase OS=Sus scrofa OX=9823 GN=MOV10 PE=1 SV=1 CANONICAL=F1SBP9-1" }, "locus": { "chromosome": "4", "start_pos": 107749423, "end_pos": 107738350, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053290.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053290.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039025.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039025.1" } ] } }, { "isoform_ac": "A0A287AA16-1", "url": "https://www.uniprot.org/uniprotkb/F1SBP9/entry#A0A287AA16-1", "sequence": { "sequence": "MTGLFFSEVHRPPPAVQNQPYFGGEVLSASPETLKILSVPILSLCPGPVLPHTEWPSDAVPSLPAAVPHSPVSSAPGSFGNPTPGFSSMLYGMKIANLAYVTRTRVRFFKLDHWADVWFPEKRRMKLGSEISKHHRAEYLHGKHGVDVEVQGPHEARDGQLLIRLDLNRKEVLTLRLRNGGTQPVTLTHLFPLCRTPQFAFYNGDQELPCPLGPGESYELHVHCKTSFVGYFPATVLWELLGPGEPGSEGAGTFYIARFLAGVAHSPLAAQLKPTTPFKRTQITGNPVVTNRVEEGERPDRSRNYDLELSMALGTYCPPLRLRQLLPILLQGTNIFTAPKEIAEIKAQLEAALKWRNYEVKLRLLLHLEELQMEHDIRHYDLESVPMTWDPIDQNPRLLTLEVPGVAESRPSVLRGDHLFAVLSSETHQEDAVTYKGFVHRVELDRVKLSFSARLYDRSLESNPEQLQAMKHIVMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAPSRDIRLVPEDIKPCCNWDAQKGDYVFPAKKKLQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHSMEPESLVAIAGLLEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTYNALYKKGPDGYNPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRERFCRWEGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLTSSSKKGKARLSPRSVGVISPYRKQVEKIRHCITKLDKELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKAFLEFCKENGGYTGCPFPAKLDLQQGQNLLQGLSKLSPSTSGPRSHNYLPQEGEGGLPLQVEPEWRNEL", "length": 964, "header": "tr|A0A287AA16-1|F1SBP9_PIG Computationally mapped isoform of RNA helicase OS=Sus scrofa OX=9823 GN=MOV10 PE=1 SV=1 CANONICAL=F1SBP9-1" }, "locus": { "chromosome": "4", "start_pos": 107749423, "end_pos": 107738350, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049570.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049570.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040642.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040642.1" } ] } }, { "isoform_ac": "A0A287AA59-1", "url": "https://www.uniprot.org/uniprotkb/F1SBP9/entry#A0A287AA59-1", "sequence": { "sequence": "MPSKFNCRQLREMGQRFEDFLVAEGLDMETDRERLRTIYNRDFKTSFGNPTPGFSSMLYGMKIANLAYVTRTRVRFFKLDHWADVWFPEKRRMKLGSEISKHHRAEYLHGKHGVDVEVQGPHEARDGQLLIRLDLNRKEVLTLRLRNGGTQPVTLTHLFPLCRTPQFAFYNGDQELPCPLGPGESYELHVHCKTSFVGYFPATVLWELLGPGEPGSEGAGTFYIARFLAGVAHSPLAAQLKPTTPFKRTQITGNPVVTNRVEEGERPDRSRNYDLELSMALGTYCPPLRLRQLLPILLQGTNIFTAPKEIAEIKAQLEAALKWRNYEVKLRLLLHLEELQMEHDIRHYDLESVPMTWDPIDQNPRLLTLEVPGVAESRPSVLRGDHLFAVLSSETHQEDAVTYKGFVHRVELDRVKLSFSASLLDRFVDGLTFKVNFTFNRQPLRVQHRALELTGRWPLWPMLFPVASRGVPLLPSDVKLKLYDRSLESNPEQLQAMKHIVMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAPSRDIRLVPEDIKPCCNWDAQKGDYVFPAKKKLQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHSMEPESLVAIAGLLEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTYNALYKKGPDGYNPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRERFCRWEGLPRQVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKAFLEFCKENGGYTGCPFPAKLDLQQGQNLLQGLSKLSPSTSGPRSHNYLPQEGEGGLPLQVEPEWRNEL", "length": 902, "header": "tr|A0A287AA59-1|F1SBP9_PIG Computationally mapped isoform of RNA helicase OS=Sus scrofa OX=9823 GN=MOV10 PE=1 SV=2 CANONICAL=F1SBP9-1" }, "locus": { "chromosome": "4", "start_pos": 107763379, "end_pos": 107738350, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056322.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056322.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040781.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040781.2" } ] } }, { "isoform_ac": "A0A287AN16-1", "url": "https://www.uniprot.org/uniprotkb/F1SBP9/entry#A0A287AN16-1", "sequence": { "sequence": "MTGLFFSEVHRPPPAVQNQPYFGGEVLSASPETLKILSVPILSLCPGPVLPHTEWPSDAVPSLPAAVPHSPVSSAPGSFGNPTPGFSSMLYGMKIANLAYVTRTRVRFFKLDHWADVWFPEKRRMKLGSEISKHHRSLLAKIFYDRAEYLHGKHGVDVEVQGPHEARDGQLLIRLDLNRKEVLTLRLRNGGTQPVTLTHLFPLCRTPQFAFYNGDQELPCPLGPGESYELHVHCKTSFVGYFPATVLWELLGPGEPGSEGAGTFYIARFLAGVAHSPLAAQLKPTTPFKRTQITGNPVVTNRVEEGERPDRSRNYDLELSMALGTYCPPLRLRQLLPILLQGTNIFTAPKEIAEIKAQLEAALKWRNYEVKLRLLLHLEELQMEHDIRHYDLESVPMTWDPIDQNPRLLTLEVPGVAESRPSVLRGDHLFAVLSSETHQEDAVTYKGFVHRVELDRVKLSFSASLLDRFVDGLTFKVNFTFNRQPLRVQHRALELTGRWPLWPMLFPVASRGVPLLPSDVKLKLYDRSLESNPEQLQAMKHIVMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAPSRDIRLVPEDIKPCCNWDAQKGDYVFPAKKKLQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHSMEPESLVAIAGLLEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTYNALYKKGPDGYNPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRERFCRWEGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLTSSSKKGKARLSPRSVGVISPYRKQVEKIRHCITKLDKELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKAFLEFCKENGGYTGCPFPAKLDLQQGQNLLQGLSKLSPSTSGPRSHNYLPQEGEGGLPLQVEPEWRNEL", "length": 1033, "header": "tr|A0A287AN16-1|F1SBP9_PIG Computationally mapped isoform of RNA helicase OS=Sus scrofa OX=9823 GN=MOV10 PE=1 SV=1 CANONICAL=F1SBP9-1" }, "locus": { "chromosome": "4", "start_pos": 107749423, "end_pos": 107738350, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062291.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062291.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045448.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045448.1" } ] } }, { "isoform_ac": "A0A287B3Q7-1", "url": "https://www.uniprot.org/uniprotkb/F1SBP9/entry#A0A287B3Q7-1", "sequence": { "sequence": "MTGLFFSEVHRPPPAVQNQPYFGGEVLSASPETLKILSVPILSLCPGPVLPHTEWPSDAVPSLPAAVPHSPVSSAPGSFGNPTPGFSSMLYGMKIANLAYVTRTRVRFFKLDHWADVWFPEKRRMKLGSEISKHHRSLLAKIFYDRAEYLHGKHGVDVEVQGPHEARDGQLLIRLDLNRKEVLTLRLRNGGTQPVTLTHLFPLCRTPQFAFYNGDQELPCPLGPGEWVSKGKSPWRRAYPRKKHALAGQWAPALARSCLGAVPRLGMLVGGSLRHADSRSRPPPGESYELHVHCKTSFVGYFPATVLWELLGPGEPGSEGAGTFYIARFLAGVAHSPLAAQLKPTTPFKRTQITGNPVVTNRVEEGERPDRSRNYDLELSMALGTYCPPLRLRQLLPILLQGTNIFTAPKEIAEIKAQLEAALKWRNYEVKLRLLLHLEELQMEHDIRHYDLESVPMTWDPIDQNPRLLTLEVPGVAESRPSVLRGDHLFAVLSSETHQEDAVTYKGFVHRVELDRVKLSFSASLLDRFVDGLTFKVNFTFNRQPLRVQHRALELTGRWPLWPMLFPVASRGVPLLPSDVKLKLYDRSLESNPEQLQAMKHIVMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAPSRDIRLVPEDIKPCCNWDAQKGDYVFPAKKKLQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHSMEPESLVAIAGLLEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTYNALYKKGPDGYNPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRERFCRWEGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLTSSSKKGKARLSPRSVGVISPYRKQVEKIRHCITKLDKELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKAFLEFCKENGGYTGCPFPAKLDLQQGQNLLQGLSKLSPSTSGPRSHNYLPQEGEGGLPLQVEPEWRNEL", "length": 1093, "header": "tr|A0A287B3Q7-1|F1SBP9_PIG Computationally mapped isoform of RNA helicase OS=Sus scrofa OX=9823 GN=MOV10 PE=1 SV=2 CANONICAL=F1SBP9-1" }, "locus": { "chromosome": "4", "start_pos": 107749423, "end_pos": 107738350, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041267.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041267.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051048.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051048.2" } ] } }, { "isoform_ac": "A0A4X1T8U6-1", "url": "https://www.uniprot.org/uniprotkb/F1SBP9/entry#A0A4X1T8U6-1", "sequence": { "sequence": "MPSKFNCRQLREMGQRFEDFLVAEGLDMETDRERLRTIYNRDFKTSFGNPTPGFSSMLYGMKIANLAYVTRTRVRFFKLDHWADVWFPEKRRMKLGSEISKHHRAEYLHGKHGVDVEVQGPHEARDGQLLIRLDLNRKEVLTLRLRNGGTQPVTLTHLFPLCRTPQFAFYNGDQELPCPLGPGESYELHVHCKTSFVGYFPATVLWELLGPGEPGSEGAGTFYIARFLAGVAHSPLAAQLKPTTPFKRTQITGNPVVTNRVEEGERPDRSRNYDLELSMALGTYCPPLRLRQLLPILLQGTNIFTAPKEIAEIKAQLEAALKWRNYEVKLRLLLHLEELQMEHDIRHYDLESVPMTWDPIDQNPRLLTLEVPGVAESRPSVLRGDHLFAVLSSETHQEDAVTYKGFVHRVELDRVKLSFSASLLDRFVDGLTFKVNFTFNRQPLRVQHRALELTGRWPLWPMLFPVASRGVPLLPSDVKLKLYDRSLESNPEQLQAMKHIVMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAPSRDIRLVPEDIKPCCNWDAQKGDYVFPAKKKLQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHSMEPESLVAIAGLLEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTYNALYKKGPDGYNPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRERFCRWEGLPRQVEKIRHCITKLDKELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKAFLEFCKENGGYTGCPFPAKLDLQQGQNLLQGLSKLSPSTSGPRSHNYLPQEGEGGLPLQVEPEWRNEL", "length": 927, "header": "tr|A0A4X1T8U6-1|F1SBP9_PIG Computationally mapped isoform of RNA helicase OS=Sus scrofa OX=9823 GN=MOV10 PE=1 SV=1 CANONICAL=F1SBP9-1" }, "locus": { "chromosome": "4", "start_pos": 107763379, "end_pos": 107738350, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048678.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048678.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055840.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055840.1" } ] } }, { "isoform_ac": "F1SBP9-1", "url": "https://www.uniprot.org/uniprotkb/F1SBP9/entry#F1SBP9-1", "sequence": { "sequence": "MPSKFNCRQLREMGQRFEDFLVAEGLDMETDRERLRTIYNRDFKTSFGNPTPGFSSMLYGMKIANLAYVTRTRVRFFKLDHWADVWFPEKRRMKLGSEISKHHRSLLAKIFYDRAEYLHGKHGVDVEVQGPHEARDGQLLIRLDLNRKEVLTLRLRNGGTQPVTLTHLFPLCRTPQFAFYNGDQELPCPLGPGESYELHVHCKTSFVGYFPATVLWELLGPGEPGSEGAGTFYIARFLAGVAHSPLAAQLKPTTPFKRTQITGNPVVTNRVEEGERPDRSRNYDLELSMALGTYCPPLRLRQLLPILLQGTNIFTAPKEIAEIKAQLEAALKWRNYEVKLRLLLHLEELQMEHDIRHYDLESVPMTWDPIDQNPRLLTLEVPGVAESRPSVLRGDHLFAVLSSETHQEDAVTYKGFVHRVELDRVKLSFSASLLDRFVDGLTFKVNFTFNRQPLRVQHRALELTGRWPLWPMLFPVASRGVPLLPSDVKLKLYDRSLESNPEQLQAMKHIVMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAPSRDIRLVPEDIKPCCNWDAQKGDYVFPAKKKLQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHSMEPESLVAIAGLLEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTYNALYKKGPDGYNPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRERFCRWEGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLTSSSKKGKARLSPRSVGVISPYRKQVEKIRHCITKLDKELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKAFLEFCKENGGYTGCPFPAKLDLQQGQNLLQGLSKLSPSTSGPRSHNYLPQEGEGGLPLQVEPEWRNEL", "length": 1001, "header": "tr|F1SBP9-1|F1SBP9_PIG Isoform 1 of RNA helicase OS=Sus scrofa OX=9823 GN=MOV10 PE=1 SV=2 CANONICAL=F1SBP9-1" }, "locus": { "chromosome": "4", "start_pos": 107763379, "end_pos": 107738350, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007422.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007422.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007227.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007227.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 910, "start_aa": "Thr", "end_pos": 910, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr910", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A584", "url": "https://www.uniprot.org/uniprotkb/A0A287A584" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": 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"MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAIRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSSHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYHAKENDFDRLVLQYAPSA", "length": 308, "header": "tr|F1S7E1-1|F1S7E1_PIG Isoform 1 of Coatomer subunit epsilon OS=Sus scrofa OX=9823 GN=COPE PE=1 SV=4 CANONICAL=F1S7E1-1" }, "isoforms": [ { "isoform_ac": "A0A287A7D8-1", "url": "https://www.uniprot.org/uniprotkb/F1S7E1/entry#A0A287A7D8-1", "sequence": { "sequence": "MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAIRMFAEYLASDSRRMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSSHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYHAKENDFDRLVLQYAPSA", "length": 257, "header": "tr|A0A287A7D8-1|F1S7E1_PIG Computationally mapped isoform of Coatomer subunit epsilon OS=Sus scrofa OX=9823 GN=COPE PE=1 SV=1 CANONICAL=F1S7E1-1" }, "locus": { "chromosome": "2", "start_pos": 58948307, "end_pos": 58931013, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052553.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052553.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039857.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039857.2" } ] } }, { "isoform_ac": "A0A5G2QAH0-1", "url": "https://www.uniprot.org/uniprotkb/F1S7E1/entry#A0A5G2QAH0-1", "sequence": { "sequence": "MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAIRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVDSSHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYHAKENDFDRLVLQYAPSA", "length": 256, "header": "tr|A0A5G2QAH0-1|F1S7E1_PIG Computationally mapped isoform of Coatomer subunit epsilon OS=Sus scrofa OX=9823 GN=COPE PE=1 SV=1 CANONICAL=F1S7E1-1" }, "locus": { "chromosome": "2", "start_pos": 58948307, "end_pos": 58931013, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072022.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072022.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061001.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061001.1" } ] } }, { "isoform_ac": "A0A8W4FJH8-1", "url": "https://www.uniprot.org/uniprotkb/F1S7E1/entry#A0A8W4FJH8-1", "sequence": { "sequence": "MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAIRMFAEYLASDSRRKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSSHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYHAKENDFDRLVLQYAPSA", "length": 239, "header": "tr|A0A8W4FJH8-1|F1S7E1_PIG Computationally mapped isoform of Coatomer subunit epsilon OS=Sus scrofa OX=9823 GN=COPE PE=1 SV=1 CANONICAL=F1S7E1-1" }, "locus": { "chromosome": "2", "start_pos": 58948307, "end_pos": 58931013, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103655.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103655.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079621.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079621.1" } ] } }, { "isoform_ac": "F1S7E0-1", "url": "https://www.uniprot.org/uniprotkb/F1S7E1/entry#F1S7E0-1", "sequence": { "sequence": "MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKRKFGVVLDEIKPSSAPELQAIRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSSHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYHAKENDFDRLVLQYAPSA", "length": 287, "header": "tr|F1S7E0-1|F1S7E0_PIG Computationally mapped isoform of Coatomer subunit epsilon OS=Sus scrofa OX=9823 GN=COPE PE=1 SV=2 CANONICAL=F1S7E1-1" }, "locus": { "chromosome": "2", "start_pos": 58948307, "end_pos": 58931013, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027115.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027115.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027288.2", "url": "https://www.ensembl.org/id/ENSSSCP00000027288.2" } ] } }, { "isoform_ac": "F1S7E1-1", "url": "https://www.uniprot.org/uniprotkb/F1S7E1/entry#F1S7E1-1", "sequence": { "sequence": "MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAIRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSSHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYHAKENDFDRLVLQYAPSA", "length": 308, "header": "tr|F1S7E1-1|F1S7E1_PIG Isoform 1 of Coatomer subunit epsilon OS=Sus scrofa OX=9823 GN=COPE PE=1 SV=4 CANONICAL=F1S7E1-1" }, "locus": { "chromosome": "2", "start_pos": 58948307, "end_pos": 58931013, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015208.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015208.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014802.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014802.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A7D8", "url": "https://www.uniprot.org/uniprotkb/A0A287A7D8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525632", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525632", "resource": "KEGG Pathway" }, { "id": "R-SSC-6807878", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "resource": "Reactome", "description": "COPI-mediated anterograde transport" }, { "id": "R-SSC-6811434", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811434", "resource": "Reactome", "description": "COPI-dependent Golgi-to-ER retrograde traffic" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A9R8-1", "protein_name": "Coatomer subunit epsilon", "gene_name": "Cope", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPPAPGAVSGSSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASENRRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRTLHQGDGLECTAMTIQILLKLDRLDLARKELKRMQEQDEDATLTQLATAWVNLAMGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYQAKENDFDRLALQYAPSA", "length": 308 }, "evidence": [ { "id": "F1S7E1", "url": "https://omabrowser.org/oma/group/F1S7E1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O14579-1", "protein_name": "Coatomer subunit epsilon", "gene_name": "COPE", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYAPSA", "length": 308 }, "evidence": [ { "id": "F1S7E1", "url": "https://omabrowser.org/oma/group/F1S7E1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O89079-1", "protein_name": "Coatomer subunit epsilon", "gene_name": "Cope", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPPVPGAVSGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRTLHQGDGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRAHPFIKEYQAKENDFDRLAMQYAPSA", "length": 308 }, "evidence": [ { "id": "F1S7E1", "url": "https://omabrowser.org/oma/group/F1S7E1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q28104-1", "protein_name": "Coatomer subunit epsilon", "gene_name": "COPE", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQYAPSA", "length": 308 }, "evidence": [ { "id": "F1S7E1", "url": "https://omabrowser.org/oma/group/F1S7E1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q55FU2-1", "protein_name": "Coatomer subunit epsilon", "gene_name": "cope", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDDILFESKNYFYLGNYQSTINEINKKSRQIIEKSLKAESDYFLYRCYIAQGNYDLVLQETKNNRGSGEDPTIAGLQLLASYLSKPDENREGTLITITQWISDGVVKFNYHLQVIIATIYFNEQLYDEALQILNNCDHIEGLSMLIQIFLKIDRLDLAQKAYDTMKKIIDPDATPALLSLAWINIYNGEEKLKSALSSFEEMAERYGPTPLLLNGQAVCAIGMKRFEKAESLLLESIEKNPKNSDTLANLINCYINMKKPNEIIQRFINQLKTLSPKHDWTSAVNEAEALFEVSKSRFN", "length": 300 }, "evidence": [ { "id": "F1S7E1", "url": "https://omabrowser.org/oma/group/F1S7E1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5ZIK9-1", "protein_name": "Coatomer subunit epsilon", "gene_name": "COPE", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASGAGAGPAGQGGEADELFDVKNSFYIGAYQAAINEAQRIKPSNPEKETERDVFLFRSYIAQRKYGVVLDEIKANASPELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVANTTFLLMAASIYFHDKNPDAALRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEALDKDSGHPETLINFVVLSQHLGKPPEVTNRYLSQLKDAHKNHPFIKEYQAKENDFDRLAMQYAPSA", "length": 308 }, "evidence": [ { "id": "F1S7E1", "url": "https://omabrowser.org/oma/group/F1S7E1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q60445-1", "protein_name": "Coatomer subunit epsilon", "gene_name": "COPE", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAPPAPGAASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPDREVERDVFLYRAYIAQRKYGVVLDEIKPSSAPELQAVRMFADYLATENRRDAIVVELDREMSRSVDVTNTTFLLMAASVYFHDQNPDAALRTLHQGDSLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYQAKENDFDRLALQYAPSA", "length": 308 }, "evidence": [ { "id": "F1S7E1", "url": "https://omabrowser.org/oma/group/F1S7E1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q9SA78-1", "protein_name": "Coatomer subunit epsilon-1", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASMAGPDHLFNLRNHFYLGAYQAAINNSEIPNLSQEDIVERDCLVHRAYIALGSYQLVISEIDEAAATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEALKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFQDFSEKYPMTSLILNGKAVCCMHMGNFEEAETLLLEALNKDAKDPETLANLVVCSLHVGKSSSRYLNQLKLSHPEHVLVKRAASAEDNFERALQSFA", "length": 292 }, "evidence": [ { "id": "F1S7E1", "url": "https://omabrowser.org/oma/group/F1S7E1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9Y0Y5-1", "protein_name": "Coatomer subunit epsilon", "gene_name": "epsilonCOP", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSRQQNEEDTNSVLFDARNEYYIGNFMGSINFVLPEQGTAGPELLSYMYLSYLAIDSGRIVASDIKEGNSTPLQALRLVHEAFEQPSRTEELLEKLTDKVAGEEDETNIWHLATAIVYCHDGQFENALKILHGSTNLESMALSVQCLLRLQRVDLAKQLVAKMQEISDDATLTQLAQAWVALAQGTEQMQDAFHIYQEFCEKFKPTPALLNGQAVVHLGLERYEEADSVLRESLLKKHNDYDTLINLMVHAHLTGKPTEAITRNLEQLRQFYPKSDFVTDLDKKSAEFDRLCLQYDVEGGEKLLAV", "length": 306 }, "evidence": [ { "id": "F1S7E1", "url": "https://omabrowser.org/oma/group/F1S7E1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1S7E1", "url": "https://www.uniprot.org/uniprotkb/F1S7E1" } ], "pmid": "" }, { "name": "COPI-coated vesicle membrane", "id": "GO:0030663", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030663", "evidence": [ { "database": "UniProtKB", "id": "F1S7E1", "url": "https://www.uniprot.org/uniprotkb/F1S7E1" } ], "pmid": "" }, { "name": "COPI vesicle coat", "id": "GO:0030126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030126", "evidence": [ { "database": "UniProtKB", "id": "F1S7E1", "url": "https://www.uniprot.org/uniprotkb/F1S7E1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1S7E1", "url": "https://www.uniprot.org/uniprotkb/F1S7E1" } ], "pmid": "" }, { "name": "retrograde 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004526", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004526", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009068", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009068", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010987", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010987", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014729", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014729", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016061", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016061", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017449", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017449", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020056", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020056", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020059", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020059", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020061", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020061", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033721", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033721", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036282", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036282", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036621", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036621", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045864", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045864", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049437", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049437", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NVTFINW", "url": "https://omabrowser.org/oma/group/NVTFINW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZQW0", "url": "https://www.orthodb.org/?gene=A0A286ZQW0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43382", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43382", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43382:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43382:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00458", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00458", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00587", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00587", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00749", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00749", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03129", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03129", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03950", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03950", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09180", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09180", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20974", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20974", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9856649", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9856649", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "14305", "url": "https://www.rhea-db.org/rhea/14305", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "23540", "url": "https://www.rhea-db.org/rhea/23540", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZQW0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZQW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQW0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R930", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R930", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R930-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R930-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9K5-1", "url": "https://www.uniprot.org/uniprotkb/F1S9K5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATLCLTVNSGDPPLGALLAVEHVKDTVSVSVEEGRENTLRVSENVVFTDINSILRYLARIAATAGLYGSNLLEHTEIDHWLEFSATKLSSSDLFTSAVKELNHCLSLRTYLVGNSLSLADLCVWATLKGNAAWQEQLQQNKAPVHVKRWFGFLEAQRAFQSVGTKWNASTTKAKVVPEKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESKHRANSVEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSIVNMEWDKIWAFNKKVIDPVAPRYVALLKKEAVPVNIPEAQEEMKEVAKHPKNPDVGLKPVWYSPKVFIEGADAETLSEGEMVTFINWGNINITKIHKNADGKITSLDAKLNLENKDYKKTTKITWLAETARALPVPAICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCIEAPCVLIYIPDGHTKEMPTSGSKEKTKVETAKNETTTPLKTRSPPSLNNTCAASEDALVLYNRVAAQGDVVRELKAKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPGSPPAAAVQNVSSESSSSVLESKSLYDEVAAQGEVVRKLKAEKAPKAKVNEAVECLLSLKAQYKEKTGQEYIPGQPPSSQSSDSSPTRSCEPSGPETPEAKLLFDKVASQGEVVRKLKAEKASKDHVDTAVQELLQLKAQYKSLTGVDYKPVSVTGAEDRDKKKKEKENKSEKQNKPQKQNDGQKKDASKTPESGLSPGGAGEGPGPKKQTRLGLEAKKEENLADWYSQVITKSEMIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALETEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTVEAFISASGRAIQGATSHHLGQNFSKMFEIVFEDPKTPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVVIPCGITNALAEEDRDALIAKCHDYRRRLLSVNIRVRVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTLAENEAETKLHALLEDIHANLFTRASEDLKAHMVVANTMEDFQKELDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPAAKCVCGKNPAKFYTLFGRSY", "length": 1512, "header": "tr|F1S9K5-1|F1S9K5_PIG Isoform 1 of Bifunctional glutamate/proline--tRNA ligase OS=Sus scrofa OX=9823 GN=EPRS1 PE=1 SV=2 CANONICAL=F1S9K5-1" }, "isoforms": [ { "isoform_ac": "A0A286ZQW0-1", "url": "https://www.uniprot.org/uniprotkb/F1S9K5/entry#A0A286ZQW0-1", "sequence": { "sequence": "MATLCLTVNSGDPPLGALLAVEHVKDTVSVSVEEGRENTLRVSENVVFTDINSILRYLARIAATAGLYGSNLLEHTEIDHWLEFSATKLSSSDLFTSAVKELNHCLSLRTYLVGNSLSLADLCVWATLKGNAAWQEQLQQNKAPVHVKRWFGFLEAQRAFQSVGTKWNASTTKAKVVPEKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESKHRANSVEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSIVNMEWDKIWAFNKKLRALCKKVIDPVAPRYVALLKKEAVPVNIPEAQEEMKEVAKHPKNPDVGLKPVWYSPKVFIEGADAETLSEGEMVTFINWGNINITKIHKNADGKITSLDAKLNLENKDYKKTTKITWLAETARALPVPAICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCIEAPCVLIYIPDGHTKEMPTSGSKEKTKVETAKNETTTPLKTRSPPSLNNTCAASEDALVLYNRVAAQGDVVRELKAKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPGSPPAAAVQNVSSESSSSVLESKSLYDEVAAQGEVVRKLKAEKAPKAKVNEAVECLLSLKAQYKEKTGQEYIPGQPPSSQSSDSSPTRSCEPSGPETPEAKLLFDKVASQGEVVRKLKAEKASKDHVDTAVQELLQLKAQYKSLTGVDYKPVSVTGAEDRDKKKKEKENKSEKQNKPQKQNDGQKKDASKTPESGLSPGGAGEGPGPKKQTRLGLEAKKEENLADWYSQVITKSEMIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALETEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTVEAFISASGRAIQGATSHHLGQNFSKMFEIVFEDPKTPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVVIPCGITNALAEEDRDALIAKCHDYRRRLLSVNIRVRVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTLAENEAETKLHALLEDIHANLFTRASEDLKAHMVVANTMEDFQKELDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPAAKCVCGKNPAKFYTLFGRSY", "length": 1519, "header": "tr|A0A286ZQW0-1|F1S9K5_PIG Computationally mapped isoform of Bifunctional glutamate/proline--tRNA ligase OS=Sus scrofa OX=9823 GN=EPRS1 PE=1 SV=1 CANONICAL=F1S9K5-1" }, "locus": { "chromosome": "10", "start_pos": 9648251, "end_pos": 9579513, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043477.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043477.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034014.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034014.1" } ] } }, { "isoform_ac": "A0A5G2R930-1", "url": "https://www.uniprot.org/uniprotkb/F1S9K5/entry#A0A5G2R930-1", "sequence": { "sequence": "TSLRQSHSNSGSEPRLRPTPQLTATPDLVNSVIEMGMVLTELVCLLNLNTGMRFFSQIDHWLEFSATKLSSSDLFTSAVKELNHCLSLRTYLVGNSLSLADLCVWATLKGNAAWQEQLQQNKAPVHVKRWFGFLEAQRAFQSVGTKWNASTTKAKVVPEKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESKHRANSVEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSIVNMEWDKIWAFNKKVIDPVAPRYVALLKKEAVPVNIPEAQEEMKEVAKHPKNPDVGLKPVWYSPKVFIEGADAETLSEGEMVTFINWGNINITKIHKNADGKITSLDAKLNLENKDYKKTTKITWLAETARALPVPAICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCIEAPCVLIYIPDGHTKEMPTSGSKEKTKVETAKNETTTPLKTRSPPSLNNTCAASEDALVLYNRVAAQGDVVRELKAKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPGSPPAAAVQNVSSESSSSVLESKSLYDEVAAQGEVVRKLKAEKAPKAKVNEAVECLLSLKAQYKEKTGQEYIPGQPPSSQSSDSSPTRSCEPSGPETPEAKLLFDKVASQGEVVRKLKAEKASKDHVDTAVQELLQLKAQYKSLTGVDYKPVSVTGAEDRDKKKKEKENKSEKQNKPQKQNDGQKKDASKTPESGLSPGGAGEGPGPKKQTRLGLEAKKEENLADWYSQVITKSEMIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALETEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTVEAFISASGRAIQGATSHHLGQNFSKMFEIVFEDPKTPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVVIPCGITNALAEEDRDALIAKCHDYRRRLLSVNIRVRVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTLAENEAETKLHALLEDIHANLFTRASEDLKAHMVVANTMEDFQKELDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPAAKCVCGKNPAKFYTLFGRSY", "length": 1492, "header": "tr|A0A5G2R930-1|F1S9K5_PIG Computationally mapped isoform of Bifunctional glutamate/proline--tRNA ligase OS=Sus scrofa OX=9823 GN=EPRS1 PE=1 SV=1 CANONICAL=F1S9K5-1" }, "locus": { "chromosome": "10", "start_pos": 9637308, "end_pos": 9579513, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084252.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084252.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073788.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073788.1" } ] } }, { "isoform_ac": "F1S9K5-1", "url": "https://www.uniprot.org/uniprotkb/F1S9K5/entry#F1S9K5-1", "sequence": { "sequence": "MATLCLTVNSGDPPLGALLAVEHVKDTVSVSVEEGRENTLRVSENVVFTDINSILRYLARIAATAGLYGSNLLEHTEIDHWLEFSATKLSSSDLFTSAVKELNHCLSLRTYLVGNSLSLADLCVWATLKGNAAWQEQLQQNKAPVHVKRWFGFLEAQRAFQSVGTKWNASTTKAKVVPEKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESKHRANSVEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSIVNMEWDKIWAFNKKVIDPVAPRYVALLKKEAVPVNIPEAQEEMKEVAKHPKNPDVGLKPVWYSPKVFIEGADAETLSEGEMVTFINWGNINITKIHKNADGKITSLDAKLNLENKDYKKTTKITWLAETARALPVPAICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCIEAPCVLIYIPDGHTKEMPTSGSKEKTKVETAKNETTTPLKTRSPPSLNNTCAASEDALVLYNRVAAQGDVVRELKAKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPGSPPAAAVQNVSSESSSSVLESKSLYDEVAAQGEVVRKLKAEKAPKAKVNEAVECLLSLKAQYKEKTGQEYIPGQPPSSQSSDSSPTRSCEPSGPETPEAKLLFDKVASQGEVVRKLKAEKASKDHVDTAVQELLQLKAQYKSLTGVDYKPVSVTGAEDRDKKKKEKENKSEKQNKPQKQNDGQKKDASKTPESGLSPGGAGEGPGPKKQTRLGLEAKKEENLADWYSQVITKSEMIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALETEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTVEAFISASGRAIQGATSHHLGQNFSKMFEIVFEDPKTPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVVIPCGITNALAEEDRDALIAKCHDYRRRLLSVNIRVRVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTLAENEAETKLHALLEDIHANLFTRASEDLKAHMVVANTMEDFQKELDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPAAKCVCGKNPAKFYTLFGRSY", "length": 1512, "header": "tr|F1S9K5-1|F1S9K5_PIG Isoform 1 of Bifunctional glutamate/proline--tRNA ligase OS=Sus scrofa OX=9823 GN=EPRS1 PE=1 SV=2 CANONICAL=F1S9K5-1" }, "locus": { "chromosome": "10", "start_pos": 9648251, "end_pos": 9579513, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011838.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011838.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011535.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011535.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZQW0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQW0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9856649", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9856649", "resource": "Reactome", "description": "Transcriptional and post-translational regulation of MITF-M expression and activity" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GJ92-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "Eprs1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALCLTVNAGNPPLEALLAVEHVKGDVSISVEEGKENLLRVSESVVFTDTNSILRYLARVAATSGLYGSNLMEHTEIDHWLEFSATKLSSCDVLTSAIKELNHCLSLRTYLVGNSLTLADLCVWATLKGNAACQEHLRQSKTLVHVNRWYGFLEAQQAFRSVGTKWDASANKATGAPDRKQDIGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIEEGKAYVDDTPADEMKAEREQRIESRHRKNPVEKNLQMWEEMKRGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKLRALCKKVIDPVAPRYVALLKKEVIPVNILDAQEEMKEVARHPKNPDVGLKPVWYSPKVFIEGADAETFSEGEMVTFINWGNINITKIHKNPDGKITSLDAKLNLENKDYKKTTKITWLAETTQALPVPAVCVTYEHLITKPVLGKDEDFKQYVNKDSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCKEAPCILIYIPDGHTKEMPTSGSKEKTKVEISKKETGSAPKERPAAAVSAPCAAAEDAAILYSRVAVQGDAVRDLKAKKAPKEDIDAAVKQLLTLKAEYKEKTGQEYRPGNPPTAAVQTVSTKSPSNTGEYTSLYNKVAAQGELVRKLKAEKAPKAKINDAVECLLSLKAEYKEKTGKEYVPGQLPASQNSHSSPVSNAKPVGSETPEAKLLFDRVACQGEVVRKLKAEKASKDQVDSAVQELLQLKAQYKSLTGIEYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQNDGQGKDSSKSQGSGLSSGGAGEGQGPKKQTRLGLEAKKEENLAEWYSQVITKSEMIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQGALEKEKNHIADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFEEAADEVLQILELYARVYEELLAIPVVRGRKTEKEKFAGGDYTTTLEAFISASGRAIQGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGLTTRTIGVMIMVHGDNMGLVLPPRVASVQVVVIPCGITNTLSEEDREALMAKCNEYRRRLLGADIRARVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTIAEKEAESKLKGVLEDIQLNLFTRASEDLKSHMVVSDTLEDFQKVLDSGKVAQIPFCGEIDCEDWIKKTTARDQDVEPGAPSMGAKSLCIPFNPLCELQPGAMCVCGKNPAKFYTLFGRSY", "length": 1519 }, "evidence": [ { "id": "F1S9K5", "url": "https://omabrowser.org/oma/group/F1S9K5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M3ARK1-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "eprs1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MALNLTFNSSNPPLGALLTAEHVKGSVNLSVEEGKDTMLHVSDQVQFSDVNSITRYLARVAPALGLYGSNMMEQTEVDHWLEFSARRLCGQSDLSSALADLDKALALRTFLVGRSVTLADLCIWAALKGNGESQAKPSSHPHLCRWFSFLSSQVPFSSVGSKWASKVSASKAASVEKDKKQDLGKFVELPGAEMGKVVVRFPPEASGYLHIGHAKAALLNQHYQVTFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLQIKPDQFTYTSDHFPTILRMGEKLLQEGKAYIDDTPPDIMKQEREQRAESRNRNNSVEKNMQMWEEMKKGTEFGQTCCMRAKIDMNSNNGCLRDPALFRCKNAAHPRTGTTYKVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWVIEALGLRKPYIWEYARLNLNNTVLSKRKLTWFVDKGYVDGWDDPRFPTVRGVLRRGMTVDGLKQFIAAQGGSRSVVNMEWDKIWAFNKKLPVSCKKVIDPVAPRFTALLSSQVIPVCVSEAKETMKEVPKHPKNADVGLKQVWYGPKVFIEGADAETFTEGEIVTFINWGNIIITKIHRDSSGAILSLDGHLNLENTDYKKTTKITWLAESSRASFVPTVCVNYQHLITKPVLGKDDDFKDYINKNSKIEEKMIGDPCLKDLKKGDIIQLQRRGFYICDQPYEPISPHSCRESPCVLLYIPDGHTKEMPTAGSKDKSKSQPAKPVKAEPAPPSKAKSAPSSNPTPSAPGDASVILSNIMAQGDAVRQLKTEKAPKEQVDAAVKQLLALKSEFKQLTGQEYKPGMTLPASAPVQKSSAPTLAAAPGPASTGCPFTRVSEQGELVRKLKAEKAPKEQIDAAVKQLLAFKAEFKQLTGQDYKPGMAPPTASPPEPAPSSNSSPAGIYERVSEQGELVRKLKAEKAPKDQVDAAVKQLLALKAEYKQGTGQDYKPGVPTAKASPASSSSPAQLTVASTPAASAPSDSSPQAIYDRVSQQGDLVRKLKTEKAPKDQVDAAVKQLLNLKAEYKQQTGQEYKPGAPPSSGSATAQSNPTPPQSSSSQPQSSSSPQAQALFSDIAQQGEQVRRLKTEKAPKEQVDKAVKTLLELKGQYKALTGEEYKPVTTPGNSGGEDKSRKERENKSEKQGGGGGGGRKQQKGGEKPQQGQESGAGGAGEGQGPKKQTRLGLEAKKEENLADWYSQVITKAEMIEYYDVSGCYVLRPWSYSIWDAIKEFFDREIKKLGVENCYFPMFVSQAALEKEKTHIADFAPEVAWVTRSGKTELAEPIAVRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATKEEATEEVLQILDLYARVYEELMAIPVVKGRKTEKEKFAGGDYTTTVEAFISASGRAIQGATSHHLGQNFSRMFEIVFEDPKKPGEKQLAYQNSWGITTRTIGVLTMVHGDNMGLVLPPRVACLQVIIIPCGITATLPEAEKDLLLDQCSKYLSRLQKADIRVKADLRDNYSPGWKFNHWELKGVPIRFEVGPKDLKQGQFVAVRRDTGEKITVKEADAEKKIPNLLEEIQNNLFKRASDDLNKHMVVADTMEQFQKDLDQGRIVQIPFCGGIECEDWIKKTTAKDQDLEPGAPSMGAKSLCIPFKPLKNLQAGQMCVSGKEPAQYYTLFGRSY", "length": 1690 }, "evidence": [ { "id": "F1S9K5", "url": "https://omabrowser.org/oma/group/F1S9K5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AAA9TMZ2-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATLCLTVNSGDPPLGALLAVEHVKDNVSISVEEGKENILHVSENVVFTDINSILRYLARIATAAGLYGSNLLEHTEIDHWLEFSATKLSSCDLFTSAVNELNHCLSLRTYLVGNSLSLADLCVWATLKGNAAWQEQLGQNKAPVHVKRWFGFLEAQQAFQSVGTKWNVSATKAKVVPEKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESKHRENSVEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPFIWEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKLRALCKKVIDPVAPRYVALLKKEVVPVNIPEAQEEMKEVAKHPKNPDVGLKPVWYSSKVFIEGADAETLSEGEMVTFINWGNINITKIHKSAEGKIVSLDAKLNLENKDYKKTTKITWLAETEHALPVPAICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCIEAPCILIYIPDGHTKEMPTSGSKEKTKVETTKNEASTPLKTRSAPSLSTCATSEDSLVLYNRVAAQGDVVRELKAKKATKEDIDAAVKQLLALKAEYKEKTGQEYKPGNPPAAVGQNISSKSSSNIVESKSLYDEVAAQGEVVRKLKAEKAPKAKVNEAVECLLSLKAQYKEKTGKEYVPGQPPSSQSSDSSPPRSSEPSGPETPEAKLLFDKVASQGEVVRKLKAEKASKDQVDTAVQELLQLKAQYKSLAGVDYKPVSATGAEEKDKKKKEKENKSEKQNKPQKQNDSQKKDSFKTQGSGLSPNGAGEGQGPKKQTRLGLEARKEDSLADWYSQVITKSEMIEYYDVSGCYILRPWAYSIWESIKDFFDAEIKKLGVENCYFPMFVSQGALEKEKTHIADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPVKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFEEAAEEVLQILDLYARVYEELLAIPVVKGRKTEKEKFAGGDYTTTVEAFISASGRAIQGATSHHLGQNFSKMFEIVFEDPKTAGEKQFAYQNSWGLTTRTIGVMTMVHGDNVGLVLPPRVACVQVVVIPCGITNALSEEDRDALLAKCSDYQRRLLSVNIRVRVDLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKNCQFVAVRRDTGEKLTIAENEAETKLHAILEDIHINLFTRASEDLKTHMVVANTMEDFQKELDSGKIAQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELPPGAKCVCGKNPAKYYTLFGRSY", "length": 1518 }, "evidence": [ { "id": "F1S9K5", "url": "https://omabrowser.org/oma/group/F1S9K5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATLSLTVNSGDPPLGALLAVEHVKDDVSISVEEGKENILHVSENVIFTDVNSILRYLARVATTAGLYGSNLMEHTEIDHWLEFSATKLSSCDSFTSTINELNHCLSLRTYLVGNSLSLADLCVWATLKGNAAWQEQLKQKKAPVHVKRWFGFLEAQQAFQSVGTKWDVSTTKARVAPEKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIDSKHRKNPIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVALLKKEVIPVNVPEAQEEMKEVAKHPKNPEVGLKPVWYSPKVFIEGADAETFSEGEMVTFINWGNLNITKIHKNADGKIISLDAKLNLENKDYKKTTKVTWLAETTHALPIPVICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCKEAPCVLIYIPDGHTKEMPTSGSKEKTKVEATKNETSAPFKERPTPSLNNNCTTSEDSLVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEYKPGNPPAEIGQNISSNSSASILESKSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKEKTGKEYIPGQPPLSQSSDSSPTRNSEPAGLETPEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQNDGQRKDPSKNQGGGLSSSGAGEGQGPKKQTRLGLEAKKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKNPAKYYTLFGRSY", "length": 1512 }, "evidence": [ { "id": "F1S9K5", "url": "https://omabrowser.org/oma/group/F1S9K5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P28668-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "GluProRS", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSIKLKANLNNPPISGLATAHLINGTVPVEIVWSKEETSLQFPDNRLLVCHSNNDVLRALARAAPDYKLYGETAIERTQIDHWLSFSLTCEDDISWALSFLDKSIAPVTYLVANKLTIADFALFNEMHSRYEFLAAKGIPQHVQRWYDLITAQPLIQKVLQSLPEDAKVKRSPQSSKEQTPAKTGERKQEGKFVDLPGAEMGKVVVRFPPEASGYLHIGHAKAALLNQYYALAFQGTLIMRFDDTNPAKETVEFENVILGDLEQLQIKPDVFTHTSNYFDLMLDYCVRLIKESKAYVDDTPPEQMKLEREQRVESANRSNSVEKNLSLWEEMVKGSEKGQKYCVRAKIDMSSPNGCMRDPTIYRCKNEPHPRTGTKYKVYPTYDFACPIVDAIENVTHTLRTTEYHDRDDQFYWFIDALKLRKPYIWSYSRLNMTNTVLSKRKLTWFVDSGLVDGWDDPRFPTVRGIIRRGMTVEGLKEFIIAQGSSKSVVFMNWDKIWAFNKKVIDPIAPRYTALEKEKRVIVNVAGAKVERIQVSVHPKDESLGKKTVLLGPRIYIDYVDAEALKEGENATFINWGNILIRKVNKDASGNITSVDAALNLENKDFKKTLKLTWLAVEDDPSAYPPTFCVYFDNIISKAVLGKDEDFKQFIGHKTRDEVPMLGDPELKKCKKGDIIQLQRRGFFKVDVAYAPPSGYTNVPSPIVLFSIPDGHTKDVPTSGLKVNAPDAKATKKASSPVSSSGQASELDSQISQQGDLVRDLKSKKAAKDQIDVAVKKLLALKADYKSATGKDWKPGQTSASSAPVPAASSSSANDAVSVNASIVKQGDLVRDLKGKKASKPEIDAAVKTLLELKAQYKTLTGQDWKPGTVPTTAAPSASAAPSVGVNDSVAQILSQITAQGDKVRELKSAKADKATVDAAVKTLLSLKADYKAATGSDWKPGTTAPAPAAAPVKVKQEKNPDPASVLTVNTLLNKIAQQGDKIRQLKSAKSEKSLVEAEVKLLLALKTDYKSLTGQEWKPGTVAPAPTTVNVIDLTGGDSGSDVGSVLSKIQAQGDKIRKLKSEKAAKNVIDPEVKTLLALKGEYKTLSGKDWTPDAKSEPAVVKKEASPVSMASPAKDELTQEINAQGEKVRAAKGNKAAKEVIDAEVAKLLALKAKYKEVTGTDFPVAGRGGGGGGGSAKKAPKEAQPKPAKPVKKEPAADASGAVKKQTRLGLEATKEDNLPDWYSQVITKGEMIEYYDVSGCYILRQWSFAIWKAIKTWFDAEITRMGVKECYFPIFVSKAVLEKEKTHIADFAPEVAWVTKSGDSDLAEPIAVRPTSETVMYPAYAKWVQSYRDLPIRLNQWNNVVRWEFKQPTPFLRTREFLWQEGHTAFADKEEAAKEVLDILDLYALVYTHLLAIPVVKGRKTEKEKFAGGDYTTTVEAFISASGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNSWGITTRTIGVMIMVHADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALEKRLVGGGVRCEGDYRDNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVRRDTVEKITIPLADVEKKIPALLETIHESMLNKAQEDMTSHTKKVTNWTDFCGFLEQKNILLAPFCGEISCEDKIKADSARGEEAEPGAPAMGAKSLCIPFDQPAPIAASDKCINPSCTNKPKFYTLFGRSY", "length": 1714 }, "evidence": [ { "id": "F1S9K5", "url": "https://omabrowser.org/oma/group/F1S9K5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q8CGC7-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "Eprs1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAALCLTVNAGNPPLEALLAVEHVKGDVSISVEEGKENLLRVSETVAFTDVNSILRYLARIATTSGLYGTNLMEHTEIDHWLEFSATKLSSCDRLTSAINELNHCLSLRTYLVGNSLTLADLCVWATLKGSAAWQEHLKQNKTLVHVKRWFGFLEAQQAFRSVGTKWDVSGNRATVAPDKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRTESKHRKNSVEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVALLKKEVVPVNVLDAQEEMKEVARHPKNPDVGLKPVWYSPKVFIEGADAETFSEGEMVTFINWGNINITKIHKNADGKITSLDAKLNLENKDYKKTTKITWLAESTHALSIPAVCVTYEHLITKPVLGKDEDFKQYINKDSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCREAPCILIYIPDGHTKEMPTSGSKEKTKVEISKKETSSAPKERPAPAVSSTCATAEDSSVLYSRVAVQGDVVRELKAKKAPKEDIDAAVKQLLTLKAEYKEKTGQEYKPGNPSAAAVQTVSTKSSSNTVESTSLYNKVAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEKTGKDYVPGQPPASQNSHSNPVSNAQPAGAEKPEAKVLFDRVACQGEVVRKLKAEKASKDQVDSAVQELLQLKAQYKSLTGIEYKPVSATGAEDKDKKKKEKENKSEKQNKPQKQNDGQGKDSSKSQGSGLSSGGAGEGQGPKKQTRLGLEAKKEENLAEWYSQVITKSEMIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVSQAALEKEKNHIEDFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPVRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATFEEAADEVLQILELYARVYEELLAIPVVRGRKTEKEKFAGGDYTTTIEAFISASGRAIQGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGLTTRTIGVMVMVHGDNMGLVLPPRVASVQVVVIPCGITNALSEEDREALMAKCNEYRRRLLGANIRVRVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTIAEKEAEAKLEKVLEDIQLNLFTRASEDLKTHMVVSNTLEDFQKVLDAGKVAQIPFCGEIDCEDWIKKMTARDQDVEPGAPSMGAKSLCIPFNPLCELQPGAMCVCGKNPAKFYTLFGRSY", "length": 1512 }, "evidence": [ { "id": "F1S9K5", "url": "https://omabrowser.org/oma/group/F1S9K5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 9, "go_terms": [ { "name": "proline-tRNA ligase activity", "id": "GO:0004827", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004827", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "GTPase binding", "id": "GO:0051020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051020", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "glutamate-tRNA ligase activity", "id": "GO:0004818", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004818", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "RNA stem-loop binding", "id": "GO:0035613", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035613", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "prolyl-tRNA aminoacylation", "id": "GO:0006433", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006433", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "cellular response to insulin stimulus", "id": "GO:0032869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032869", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "negative regulation of translation", "id": "GO:0017148", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017148", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "cellular response to type II interferon", "id": "GO:0071346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071346", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "glutamyl-tRNA aminoacylation", "id": "GO:0006424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006424", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "regulation of long-chain fatty acid import into cell", "id": "GO:0140212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140212", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "aminoacyl-tRNA synthetase multienzyme complex", "id": "GO:0017101", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017101", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "GAIT complex", "id": "GO:0097452", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097452", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1S9K5", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1247, "end_pos": 1249, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1348, "end_pos": 1350, "annotation": "n_glycosylation_sequon" }, { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 429, "end_pos": 431, "annotation": "n_glycosylation_sequon" }, { "start_pos": 575, "end_pos": 577, "annotation": "n_glycosylation_sequon" }, { "start_pos": 726, "end_pos": 728, "annotation": "n_glycosylation_sequon" }, { "start_pos": 741, "end_pos": 743, "annotation": "n_glycosylation_sequon" }, { "start_pos": 811, "end_pos": 813, "annotation": "n_glycosylation_sequon" }, { "start_pos": 970, "end_pos": 972, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "14305", "name": "", "equation": "tRNA(Pro) + L-proline + ATP = L-prolyl-tRNA(Pro) + AMP + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "14305", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/14305" } ] }, { "id": "23540", "name": "", "equation": "tRNA(Glu) + L-glutamate + ATP = L-glutamyl-tRNA(Glu) + AMP + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "23540", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/23540" } ] }, { "id": "R-SSC-9825759", "name": "MAPK-dependent phosphorylation of KARS", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9825759", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9825759" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9K5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" }, { "id": "PS50862", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50862" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aminoacyl-transfer RNA synthetases class-II family profile", "eco_id": "ECO_0000259", "start_pos": 1056, "end_pos": 1296, "start_aa": "Ile", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1S9K5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9K5" }, { "id": "PS51185", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51185" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WHEP-TRS", "eco_id": "ECO_0000259", "start_pos": 749, "end_pos": 805, "start_aa": "Asp", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1247, "end_pos": 1249 }, { "start_pos": 1348, "end_pos": 1350 }, { "start_pos": 168, "end_pos": 170 }, { "start_pos": 429, "end_pos": 431 }, { "start_pos": 575, "end_pos": 577 }, { "start_pos": 726, "end_pos": 728 }, { "start_pos": 741, "end_pos": 743 }, { "start_pos": 811, "end_pos": 813 }, { "start_pos": 970, "end_pos": 972 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SDX8-1", "uniprot_ac": "F1SDX8", "uniprot_id": "F1SDX8_PIG", "mass": { "chemical_mass": 33753.0, "monoisotopic_mass": 33753.0 }, "refseq": { "ac": "NP_001231373", "name": "ribonuclease H2 subunit A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231373" }, "gene_names": [ { "name": "RNASEH2A", "type": "recommended", "evidence": [ { "id": "F1SDX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDX8" } ] }, { "name": "RNASEH2A", "type": "synonym", "evidence": [ { "id": "NP_001231373", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231373" } ] } ], "protein_names": [ { "name": "Ribonuclease", "type": "recommended", "evidence": [ { "id": "F1SDX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDX8/entry#names_and_taxonomy" } ] }, { "name": "3.1.26.4", "type": "synonym", "evidence": [ { "id": "F1SDX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDX8/entry#names_and_taxonomy" } ] }, { "name": "ribonuclease H2 subunit A", "type": "synonym", "evidence": [ { "id": "NP_001231373", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231373" } ] } ], "function": [ { "annotation": "Catalytic subunit of RNase HII, an endonuclease that specifically degrades the RNA of RNA:DNA hybrids. Participates in DNA replication, possibly by mediating the removal of lagging-strand Okazaki fragment RNA primers during DNA replication. Mediates the excision of single ribonucleotides from DNA:RNA duplexes.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC66", "url": "https://www.uniprot.org/uniprotkb/A0A287AC66#function" }, { "database": "UniProtKB", "id": "ARBA00024981", "url": "https://www.uniprot.org/uniprotkb/ARBA00024981#function" }, { "database": "UniProtKB", "id": "F1SDX8", "url": "https://www.uniprot.org/uniprotkb/F1SDX8#function" } ] }, { "annotation": "Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC66", "url": "https://www.uniprot.org/uniprotkb/A0A287AC66#function" }, { "database": "UniProtKB", "id": "RU003515", "url": "https://www.uniprot.org/uniprotkb/RU003515#function" }, { "database": "UniProtKB", "id": "F1SDX8", "url": "https://www.uniprot.org/uniprotkb/F1SDX8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDX8", "url": "https://www.uniprot.org/uniprotkb/F1SDX8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RNASEH2A", "url": "https://www.uniprot.org/uniprotkb/F1SDX8", "locus": { "chromosome": "2", "start_pos": 66193197, "end_pos": 66207697, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013737", "url": "https://www.ensembl.org/id/ENSSSCG00000013737" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013737", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013737", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07181", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07181", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523170", "url": "https://www.ncbi.nlm.nih.gov/gene/100523170", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004649", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004649", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024567", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024567", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523170", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523170", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "REECRFF", "url": "https://omabrowser.org/oma/group/REECRFF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SDX8", "url": "https://www.orthodb.org/?gene=F1SDX8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10954", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10954", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10954:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10954:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01351", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01351", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231373", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231373", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AC66", "url": "https://www.uniprot.org/uniprotkb/A0A287AC66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AC66-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC66-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDX8", "url": "https://www.uniprot.org/uniprotkb/F1SDX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDX8-1", "url": "https://www.uniprot.org/uniprotkb/F1SDX8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLSELERDNTGRCRLNSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPETYQERLQQRFPDIEVTVKAKADALYPVVSAASICAKVARDQAVRNWQFVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILEKEAEDVTWEDSQTGDQEGLRKIKSYFSKSPRTHPCPHLSHRYFQERGLESATTL", "length": 301, "header": "tr|F1SDX8-1|F1SDX8_PIG Isoform 1 of Ribonuclease OS=Sus scrofa OX=9823 GN=RNASEH2A PE=3 SV=1 CANONICAL=F1SDX8-1" }, "isoforms": [ { "isoform_ac": "A0A287AC66-1", "url": "https://www.uniprot.org/uniprotkb/F1SDX8/entry#A0A287AC66-1", "sequence": { "sequence": "MDLSELERDNTGRCRLNSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPETYQERLQQRFPDIEVTVKAKADALYPVVSAASICAKVARDQAVRNWQFVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILEKEAEDVTWEFLDQGSDPSHSCNLCRNCSNARSFNPLCQLGIKPVPWSCRDTTNPLVPQQELPDKLFYFTVLEVGSPRPGY", "length": 327, "header": "tr|A0A287AC66-1|F1SDX8_PIG Computationally mapped isoform of Ribonuclease OS=Sus scrofa OX=9823 GN=RNASEH2A PE=3 SV=2 CANONICAL=F1SDX8-1" }, "locus": { "chromosome": "2", "start_pos": 66205028, "end_pos": 66197213, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054730.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054730.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041485.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041485.3" } ] } }, { "isoform_ac": "F1SDX8-1", "url": "https://www.uniprot.org/uniprotkb/F1SDX8/entry#F1SDX8-1", "sequence": { "sequence": "MDLSELERDNTGRCRLNSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPETYQERLQQRFPDIEVTVKAKADALYPVVSAASICAKVARDQAVRNWQFVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILEKEAEDVTWEDSQTGDQEGLRKIKSYFSKSPRTHPCPHLSHRYFQERGLESATTL", "length": 301, "header": "tr|F1SDX8-1|F1SDX8_PIG Isoform 1 of Ribonuclease OS=Sus scrofa OX=9823 GN=RNASEH2A PE=3 SV=1 CANONICAL=F1SDX8-1" }, "locus": { "chromosome": "2", "start_pos": 66205028, "end_pos": 66198647, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015011.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015011.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014606.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014606.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC66", "url": "https://www.uniprot.org/uniprotkb/A0A287AC66" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523170", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523170", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HCX0-1", "protein_name": "Ribonuclease", "gene_name": "Rnaseh2a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLRELEKDNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFSKMEEDGDFVGWALDILSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQRFPGMEVTVKAKADSLFPVVSAASIFAKVARDQAVKNWQFVESLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEGRTQPLRRTLGSLEGSHPTSLARALRPAACRSPTGTSRSEVWRQPTASRGKCVNPPLLLGN", "length": 312 }, "evidence": [ { "id": "F1SDX8", "url": "https://omabrowser.org/oma/group/F1SDX8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O75792-1", "protein_name": "Ribonuclease H2 subunit A", "gene_name": "RNASEH2A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDLSELERDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWEDSASENQEGLRKITSYFLNEGSQARPRSSHRYFLERGLESATSL", "length": 299 }, "evidence": [ { "id": "F1SDX8", "url": "https://omabrowser.org/oma/group/F1SDX8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P53942-1", "protein_name": "Ribonuclease H2 subunit A", "gene_name": "RNH201", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVPPTVEASLESPYTKSYFSPVPSALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIRRMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVIKQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDILVESLKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDASKNSIPIKWEEQYMDSRKNAAQKTKQLQLQMVAKPVRRKRLRTLDNWYR", "length": 307 }, "evidence": [ { "id": "F1SDX8", "url": "https://omabrowser.org/oma/group/F1SDX8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q2TBT5-1", "protein_name": "Ribonuclease H2 subunit A", "gene_name": "RNASEH2A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDLSELERDNTGRCRLSSPVPPVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILESEAEDVKWEDSETGDPKGPGKIKSYFSESPQTCLRLPHRYFQERGLESATVL", "length": 299 }, "evidence": [ { "id": "F1SDX8", "url": "https://omabrowser.org/oma/group/F1SDX8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54D13-1", "protein_name": "Ribonuclease H2 subunit A", "gene_name": "rnaseh2A", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNKIIYLTELDSSVDKSEPFVMGIDEAGRGPVMGPMVYGCCYAPISKSTTLKSMKFNDSKKLTEQQRDQLFDKMGESNKILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVGPPDKYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNFDYLNIYDQDEQLSTDFGSGYPSDPLSKKWLVKNRDKVFGYPNFIRFSWKTTETAMRGACFGVDWVLENDKLKQHFQENQNDKKRFMFFKENNIENCINDF", "length": 289 }, "evidence": [ { "id": "F1SDX8", "url": "https://omabrowser.org/oma/group/F1SDX8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5U209-1", "protein_name": "Ribonuclease H2 subunit A", "gene_name": "Rnaseh2a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLSELERDNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMPETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAESVTWEDSAAEEDPEGPGRITSYFSQGPQACRPQVSHKYFQERGLETATSL", "length": 301 }, "evidence": [ { "id": "F1SDX8", "url": "https://omabrowser.org/oma/group/F1SDX8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9CWY8-1", "protein_name": "Ribonuclease H2 subunit A", "gene_name": "Rnaseh2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLSELERDNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEEDPERPGKITSYFSQGPQTCRPQAPHRYFQERGLEAASSL", "length": 301 }, "evidence": [ { "id": "F1SDX8", "url": "https://omabrowser.org/oma/group/F1SDX8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SEZ6-1", "protein_name": "Ribonuclease H2 subunit A", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYESLKLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWEADENEESGNGSSSKRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLTQF", "length": 296 }, "evidence": [ { "id": "F1SDX8", "url": "https://omabrowser.org/oma/group/F1SDX8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VPP5-1", "protein_name": "Ribonuclease H2 subunit A", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": 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"UniProtKB", "id": "F1SDX8", "url": "https://www.uniprot.org/uniprotkb/F1SDX8" } ], "pmid": "" }, { "name": "RNA-DNA hybrid ribonuclease activity", "id": "GO:0004523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004523", "evidence": [ { "database": "UniProtKB", "id": "F1SDX8", "url": "https://www.uniprot.org/uniprotkb/F1SDX8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SDX8", "url": "https://www.uniprot.org/uniprotkb/F1SDX8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SDX8", "url": "https://www.uniprot.org/uniprotkb/F1SDX8" } ], "pmid": "" }, { "name": "ribonuclease H2 complex", "id": "GO:0032299", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032299", "evidence": [ { "database": "UniProtKB", "id": "F1SDX8", "url": "https://www.uniprot.org/uniprotkb/F1SDX8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "mismatch repair", "id": "GO:0006298", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006298", "evidence": [ { "database": "UniProtKB", "id": "F1SDX8", "url": "https://www.uniprot.org/uniprotkb/F1SDX8" } ], "pmid": "" }, { "name": "RNA catabolic process", "id": "GO:0006401", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006401", "evidence": [ { "database": "UniProtKB", "id": "F1SDX8", "url": "https://www.uniprot.org/uniprotkb/F1SDX8" } ], "pmid": "" }, { "name": "DNA replication, removal of RNA primer", "id": "GO:0043137", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043137", "evidence": [ { "database": "UniProtKB", "id": "F1SDX8", "url": "https://www.uniprot.org/uniprotkb/F1SDX8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], 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"Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00786", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00786", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013148", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013407", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013407", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020933066", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933066", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": 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"MFGKKKKKIEISGPSNFEHRVHTGFDPQEQKFTGLPQQWHSLLADTANRPKPMVDPSCITPIQLAPMKTIVRGNKPCKETSINGLLEDFDNISVTRSNSLRKESPPTPDQGASSHGPGHREENGFITFSQYSSESDTTADYATDKYRDKSLYGDDLDPFYKGGHSAKQNGHVMKMKPGEAYYSEMKPLKSEITRFPIDYHAPLDSLSKPTEYSDLKWGYQRASSSSPLDYPFQFMPSRTAGTSGCSKESLAYSESEWGPSLEDYDRRPKSSYLSQTSPQPAMRQRSRSGSGLQEPTMPFGASAFKTHSQGHSYSSYTYPRLSEPTMCIPKVDYDRAQMVLSPPLSGSDTYPRGPAKLPQSQSKAGYSSSSHQYPSGYHKATLYHHPSLQTSSQYISTASYLSSLSFSSNTYPPPSWGSSSDQQPSRVSHEQFRAALQLVVSPGDPREYLDNFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHDNVVDMYNSYLVSDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLKALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDSLPPRGKDLHKVSSMLRGFLDLMLVREPSQRATAQELLGHPFLKLAGPPSCIVPLMRQYRHH", "length": 719, "header": "tr|F1SBK7-1|F1SBK7_PIG Isoform 1 of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=PAK5 PE=3 SV=3 CANONICAL=F1SBK7-1" }, "isoforms": [ { "isoform_ac": "A0A287BEY0-1", "url": "https://www.uniprot.org/uniprotkb/F1SBK7/entry#A0A287BEY0-1", "sequence": { "sequence": "MFGKKKKKIEISGPSNFEHRVHTGFDPQEQKFTGLPQQWHSLLADTANRPKPMVDPSCITPIQLAPMKTIVRGNKPCKETSINGLLEDFDNISVTRSNSLRKESPPTPDQGASSHGPGHREENGFITFSQYSSESDTTADYATDKYRDKSLYGDDLDPFYKGGHSAKQNGHVMKMKPGEAYYSEMKPLKSEITRFPIDYHAPLDSLSKPTEYSDLKWGYQRASSSSPLDYPFQFMPSRTAGTSGCSKESLAYSESEWGPSLEDYDRRPKSSYLSQTSPQPAMRQRSRSGSGLQEPTMPFGASAFKTHSQGHSYSSYTYPRLSEPTMCIPKVDYDRAQMVLSPPLSGSDTYPRGPAKLPQSQSKAGYSSSSHQYPSGYHKATLYHHPSLQTSSQYISTASYLSSLSFSSNTYPPPSWGSSSDQQPSRVSHEQFRAALQLVVSPGDPREYLDNFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHDNVVDMYNSYLVSDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLKALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDSLPPRGKDLHKVSSMLRGFLDLMLVREPSQRATAQELLGHPFLKLAALHPANQKELSTVTIHPRHMQGNA", "length": 727, "header": "tr|A0A287BEY0-1|F1SBK7_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=PAK5 PE=3 SV=1 CANONICAL=F1SBK7-1" }, "locus": { "chromosome": "17", "start_pos": 18566099, "end_pos": 18462825, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064294.1", "url": "https://www.ensembl.org/id/ENSSSCT00000064294.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055112.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055112.1" } ] } }, { "isoform_ac": "F1SBK7-1", "url": "https://www.uniprot.org/uniprotkb/F1SBK7/entry#F1SBK7-1", "sequence": { "sequence": "MFGKKKKKIEISGPSNFEHRVHTGFDPQEQKFTGLPQQWHSLLADTANRPKPMVDPSCITPIQLAPMKTIVRGNKPCKETSINGLLEDFDNISVTRSNSLRKESPPTPDQGASSHGPGHREENGFITFSQYSSESDTTADYATDKYRDKSLYGDDLDPFYKGGHSAKQNGHVMKMKPGEAYYSEMKPLKSEITRFPIDYHAPLDSLSKPTEYSDLKWGYQRASSSSPLDYPFQFMPSRTAGTSGCSKESLAYSESEWGPSLEDYDRRPKSSYLSQTSPQPAMRQRSRSGSGLQEPTMPFGASAFKTHSQGHSYSSYTYPRLSEPTMCIPKVDYDRAQMVLSPPLSGSDTYPRGPAKLPQSQSKAGYSSSSHQYPSGYHKATLYHHPSLQTSSQYISTASYLSSLSFSSNTYPPPSWGSSSDQQPSRVSHEQFRAALQLVVSPGDPREYLDNFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHDNVVDMYNSYLVSDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLKALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDSLPPRGKDLHKVSSMLRGFLDLMLVREPSQRATAQELLGHPFLKLAGPPSCIVPLMRQYRHH", "length": 719, "header": "tr|F1SBK7-1|F1SBK7_PIG Isoform 1 of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=PAK5 PE=3 SV=3 CANONICAL=F1SBK7-1" }, "locus": { "chromosome": "17", "start_pos": 18566099, "end_pos": 18463149, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007732.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007732.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007524.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007524.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 107, "start_aa": "Thr", "end_pos": 107, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr107", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BEY0", "url": "https://www.uniprot.org/uniprotkb/A0A287BEY0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" }, { "id": "R-SSC-9013407", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013407", "resource": "Reactome", "description": "RHOH GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "F1SBK7", "url": "https://www.uniprot.org/uniprotkb/F1SBK7" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SBK7", "url": "https://www.uniprot.org/uniprotkb/F1SBK7" } ], "pmid": "" }, { "name": "protein serine kinase activity", "id": "GO:0106310", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106310", "evidence": [ { "database": "UniProtKB", "id": "F1SBK7", "url": "https://www.uniprot.org/uniprotkb/F1SBK7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SBK7", "url": "https://www.uniprot.org/uniprotkb/F1SBK7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SBK7", "url": "https://www.uniprot.org/uniprotkb/F1SBK7" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SBK7", "url": "https://www.uniprot.org/uniprotkb/F1SBK7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SBK7", "url": "https://www.uniprot.org/uniprotkb/F1SBK7" } ], "pmid": "" }, { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "F1SBK7", "url": "https://www.uniprot.org/uniprotkb/F1SBK7" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1SBK7", "url": "https://www.uniprot.org/uniprotkb/F1SBK7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F1SBK7", "url": "https://www.uniprot.org/uniprotkb/F1SBK7" } ], "pmid": "" }, { "name": "cellular response to starvation", "id": "GO:0009267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009267", "evidence": [ { "database": "UniProtKB", "id": "F1SBK7", "url": "https://www.uniprot.org/uniprotkb/F1SBK7" } ], "pmid": "" }, { "name": "regulation of MAPK cascade", "id": "GO:0043408", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043408", "evidence": [ { "database": "UniProtKB", "id": "F1SBK7", "url": "https://www.uniprot.org/uniprotkb/F1SBK7" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1SBK7", "url": "https://www.uniprot.org/uniprotkb/F1SBK7" } ], "pmid": "" }, { "name": "cytoskeleton organization", "id": "GO:0007010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007010", "evidence": [ { "database": "UniProtKB", "id": "F1SBK7", "url": "https://www.uniprot.org/uniprotkb/F1SBK7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] }, { "id": "R-SSC-9013145", "name": "RAC1 binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9013145", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013145" } ] }, { "id": "R-SSC-9013157", "name": "CDC42 binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9013157", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013157" } ] }, { "id": "R-SSC-9018758", "name": "RHOH binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. 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"pmid": "" }, { "name": "visual perception", "id": "GO:0007601", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007601", "evidence": [ { "database": "UniProtKB", "id": "F1SEN9", "url": "https://www.uniprot.org/uniprotkb/F1SEN9" } ], "pmid": "" }, { "name": "phospholipase C-activating G protein-coupled receptor signaling pathway", "id": "GO:0007200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007200", "evidence": [ { "database": "UniProtKB", "id": "F1SEN9", "url": "https://www.uniprot.org/uniprotkb/F1SEN9" } ], "pmid": "" }, { "name": "regulation of circadian rhythm", "id": "GO:0042752", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042752", "evidence": [ { "database": "UniProtKB", "id": "F1SEN9", "url": "https://www.uniprot.org/uniprotkb/F1SEN9" } ], "pmid": "" }, { "name": "phototransduction", "id": "GO:0007602", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007602", "evidence": [ { "database": "UniProtKB", "id": "F1SEN9", "url": "https://www.uniprot.org/uniprotkb/F1SEN9" } ], "pmid": "" }, { "name": "cellular response to light stimulus", "id": "GO:0071482", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071482", "evidence": [ { "database": "UniProtKB", "id": "F1SEN9", "url": "https://www.uniprot.org/uniprotkb/F1SEN9" } ], "pmid": "" }, { "name": "optokinetic behavior", "id": "GO:0007634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007634", "evidence": [ { "database": "UniProtKB", "id": "F1SEN9", "url": "https://www.uniprot.org/uniprotkb/F1SEN9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SEN9", "url": "https://www.uniprot.org/uniprotkb/F1SEN9" } ], "pmid": "" }, { "name": "sperm head plasma membrane", "id": "GO:1990913", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990913", "evidence": [ { "database": "UniProtKB", "id": "F1SEN9", "url": "https://www.uniprot.org/uniprotkb/F1SEN9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "11-cis retinal binding", "id": "GO:0005502", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005502", "evidence": [ { "database": "UniProtKB", "id": "F1SEN9", "url": "https://www.uniprot.org/uniprotkb/F1SEN9" } ], "pmid": "" }, { "name": "G protein-coupled photoreceptor activity", "id": "GO:0008020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008020", "evidence": [ { "database": "UniProtKB", "id": "F1SEN9", "url": "https://www.uniprot.org/uniprotkb/F1SEN9" } ], "pmid": "" }, { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SEN9", "url": "https://www.uniprot.org/uniprotkb/F1SEN9" } ], "pmid": "" }, { "name": "photoreceptor activity", "id": "GO:0009881", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009881", "evidence": [ { "database": "UniProtKB", "id": "F1SEN9", "url": "https://www.uniprot.org/uniprotkb/F1SEN9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SEN9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 477, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SEN9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SEN9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SEN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEN9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 87, "end_pos": 349, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 22, 48 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", 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CANONICAL=F1SB90-1" }, "isoforms": [ { "isoform_ac": "A0A480UI36-1", "url": "https://www.uniprot.org/uniprotkb/F1SB90/entry#A0A480UI36-1", "sequence": { "sequence": "MGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF", "length": 354, "header": "tr|A0A480UI36-1|F1SB90_PIG Computationally mapped isoform of Guanine nucleotide-binding protein G(i) subunit alpha-1 OS=Sus scrofa OX=9823 GN=GNAI1 PE=3 SV=1 CANONICAL=F1SB90-1" }, "locus": { "chromosome": "9", "start_pos": 100271920, "end_pos": 100189791, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103952.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103952.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079637.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079637.1" } ] } }, { "isoform_ac": "A0A5G2QDJ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SB90/entry#A0A5G2QDJ3-1", "sequence": { "sequence": "MGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARAAQTHMKRQLHIFNVSLKTSIKEKTPRKYIPTSHVPRIPRMCSLSLML", "length": 148, "header": "tr|A0A5G2QDJ3-1|F1SB90_PIG Computationally mapped isoform of Guanine nucleotide-binding protein G(i) subunit alpha-1 OS=Sus scrofa OX=9823 GN=GNAI1 PE=3 SV=1 CANONICAL=F1SB90-1" }, "locus": { "chromosome": "9", "start_pos": 100271920, "end_pos": 100189838, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069487.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069487.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062206.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062206.1" } ] } }, { "isoform_ac": "A0A5G2QM73-1", "url": "https://www.uniprot.org/uniprotkb/F1SB90/entry#A0A5G2QM73-1", "sequence": { "sequence": "MCLSGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF", "length": 319, "header": "tr|A0A5G2QM73-1|F1SB90_PIG Computationally mapped isoform of Guanine nucleotide-binding protein G(i) subunit alpha-1 OS=Sus scrofa OX=9823 GN=GNAI1 PE=3 SV=1 CANONICAL=F1SB90-1" }, "locus": { "chromosome": "9", "start_pos": 100271294, "end_pos": 100189791, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082569.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082569.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065703.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065703.1" } ] } }, { "isoform_ac": "A0A8W4FC82-1", "url": "https://www.uniprot.org/uniprotkb/F1SB90/entry#A0A8W4FC82-1", "sequence": { "sequence": "MGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHENTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF", "length": 339, "header": "tr|A0A8W4FC82-1|F1SB90_PIG Computationally mapped isoform of Guanine nucleotide-binding protein G(i) subunit alpha-1 OS=Sus scrofa OX=9823 GN=GNAI1 PE=3 SV=1 CANONICAL=F1SB90-1" }, "locus": { "chromosome": "9", "start_pos": 100271920, "end_pos": 100189791, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095702.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095702.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076868.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076868.1" } ] } }, { "isoform_ac": "A0A8W4FRC4-1", "url": "https://www.uniprot.org/uniprotkb/F1SB90/entry#A0A8W4FRC4-1", "sequence": { "sequence": "MELVFKNFSICAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF", "length": 325, "header": "tr|A0A8W4FRC4-1|F1SB90_PIG Computationally mapped isoform of Guanine nucleotide-binding protein G(i) subunit alpha-1 OS=Sus scrofa OX=9823 GN=GNAI1 PE=3 SV=1 CANONICAL=F1SB90-1" }, "locus": { "chromosome": "9", "start_pos": 100221078, "end_pos": 100189791, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101873.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101873.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081141.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081141.1" } ] } }, { "isoform_ac": "F1SB90-1", "url": "https://www.uniprot.org/uniprotkb/F1SB90/entry#F1SB90-1", "sequence": { "sequence": "MKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF", "length": 302, "header": "tr|F1SB90-1|F1SB90_PIG Isoform 1 of Guanine nucleotide-binding protein G(i) subunit alpha-1 OS=Sus scrofa OX=9823 GN=GNAI1 PE=3 SV=4 CANONICAL=F1SB90-1" }, "locus": { "chromosome": "9", "start_pos": 100220857, "end_pos": 100189791, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016782.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016782.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016334.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016334.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDJ3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDJ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100144419", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100144419", "resource": "KEGG Pathway" }, { "id": "R-SSC-170670", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-170670", "resource": "Reactome", "description": "Adenylate cyclase inhibitory pathway" }, { "id": "R-SSC-392170", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-392170", "resource": "Reactome", "description": "ADP signalling through P2Y purinoceptor 12" }, { "id": "R-SSC-418594", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "resource": "Reactome", "description": "G alpha (i) signalling events" }, { "id": "R-SSC-9009391", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9009391", "resource": "Reactome", "description": "Extra-nuclear estrogen signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "B2RSH2-1", "protein_name": "Guanine nucleotide-binding protein G(i) subunit alpha-1", "gene_name": "Gnai1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF", "length": 354 }, "evidence": [ { "id": "F1SB90", "url": "https://omabrowser.org/oma/group/F1SB90/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P08539-1", "protein_name": "Guanine nucleotide-binding protein alpha-1 subunit", "gene_name": "GPA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MGCTVSTQTIGDESDPFLQNKRANDVIEQSLQLEKQRDKNEIKLLLLGAGESGKSTVLKQLKLLHQGGFSHQERLQYAQVIWADAIQSMKILIIQARKLGIQLDCDDPINNKDLFACKRILLKAKALDYINASVAGGSDFLNDYVLKYSERYETRRRVQSTGRAKAAFDEDGNISNVKSDTDRDAETVTQNEDADRNNSSRINLQDICKDLNQEGDDQMFVRKTSREIQGQNRRNLIHEDIAKAIKQLWNNDKGIKQCFARSNEFQLEGSAAYYFDNIEKFASPNYVCTDEDILKGRIKTTGITETEFNIGSSKFKVLDAGGQRSERKKWIHCFEGITAVLFVLAMSEYDQMLFEDERVNRMHESIMLFDTLLNSKWFKDTPFILFLNKIDLFEEKVKSMPIRKYFPDYQGRVGDAEAGLKYFEKIFLSLNKTNKPIYVKRTCATDTQTMKFVLSAVTDLIIQQNLKKIGII", "length": 472 }, "evidence": [ { "id": "F1SB90", "url": "https://omabrowser.org/oma/group/F1SB90/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P10824-1", "protein_name": "Guanine nucleotide-binding protein G(i) subunit alpha-1", "gene_name": "Gnai1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF", "length": 354 }, "evidence": [ { "id": "F1SB90", "url": "https://omabrowser.org/oma/group/F1SB90/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P16894-1", "protein_name": "Guanine nucleotide-binding protein alpha-1 subunit", "gene_name": "gpaA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNICGKPELGSPEEIKANQHINSLLKQARSKLEGEIKLLLLGAGESGKSTIAKQMKIIHLNGFNDEEKSSYKTIIYNNTVGSMRVLVNAAEELKIGISENNKEAASRISNDLGDHFNGVLTAELAQDIKALWADPGIQNTFQRSSEFQLNDSAAYYFDSIDRISQPLYLPSENDVLRSRTKTTGIIETVFEIQNSTFRMVDVGGQRSERKKWMHCFQEVTAVIFCVALSEYDLKLYEDDTTNRMQESLKLFKEICNTKWFANTAMILFLNKRDIFSEKITKTPITVCFKEYDGPQTYEGCSEFIKQQFINQNENPKKSIYPHLTCATDTNNILVVFNAVKDIVLNLTLGEAGMIL", "length": 356 }, "evidence": [ { "id": "F1SB90", "url": "https://omabrowser.org/oma/group/F1SB90/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P18064-1", "protein_name": "Guanine nucleotide-binding protein alpha-1 subunit", "gene_name": "GPA1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGLLCSRSRHHTEDTDENTQAAEIERRIEQEAKAEKHIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL", "length": 383 }, "evidence": [ { "id": "F1SB90", "url": "https://omabrowser.org/oma/group/F1SB90/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P63097-1", "protein_name": "Guanine nucleotide-binding protein G(i) subunit alpha-1", "gene_name": "GNAI1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF", "length": 354 }, "evidence": [ { "id": "F1SB90", "url": "https://omabrowser.org/oma/group/F1SB90/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 8, "go_terms": [ { "name": "G protein-coupled serotonin receptor binding", "id": "GO:0031821", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031821", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "G-protein beta/gamma-subunit complex binding", "id": "GO:0031683", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031683", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "D2 dopamine receptor binding", "id": "GO:0031749", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031749", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "adenylate cyclase inhibitor activity", "id": "GO:0010855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010855", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 12, "go_terms": [ { "name": "regulation of eating behavior", "id": "GO:1903998", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903998", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "chemokine-mediated signaling pathway", "id": "GO:0070098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070098", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "adenylate cyclase-modulating G protein-coupled receptor signaling pathway", "id": "GO:0007188", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007188", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "positive regulation of cholesterol biosynthetic process", "id": "GO:0045542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045542", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "adenylate cyclase-inhibiting serotonin receptor signaling pathway", "id": "GO:0007198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007198", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "positive regulation of protein localization to cell cortex", "id": "GO:1904778", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904778", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "regulation of mitotic spindle organization", "id": "GO:0060236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060236", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "T cell migration", "id": "GO:0072678", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072678", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "mast cell degranulation", "id": "GO:0043303", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043303", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "response to prostaglandin E", "id": "GO:0034695", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034695", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 9, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "F1SB90", "url": "https://www.uniprot.org/uniprotkb/F1SB90" } ], "pmid": "" }, { "name": "midbody", "id": "GO:0030496", "url": 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"Protein" ] } ], "sequence": { "sequence": "MLPPAIHFYLIPLACILMKSCLAFKNDATEILYSHVVKPVPAHTSSNSTMNQARNGGRHFSNTGLDRNTRVQVGCRELRSTKYISDGQCTSISPLKELVCAGECLPLPVLPNWIGGGYGTKYWSRRSSQEWRCVNDKTRTQRIQLQCQDGSTRTYKITVVTACKCKRYTRQHNESSHNFESMSPAKPAPHHRERKRSSKSSKHSMS", "length": 206, "header": "tr|F1SEJ1-1|F1SEJ1_PIG Isoform 1 of Sclerostin domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SOSTDC1 PE=3 SV=1 CANONICAL=F1SEJ1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1THK2-1", "url": "https://www.uniprot.org/uniprotkb/F1SEJ1/entry#A0A4X1THK2-1", "sequence": { "sequence": "MLPPAIHFYLIPLACILMKSCLAFKNDATEILYSHVVKPVPAHTSSNSTMNQARNGGRHFSNTGLDRNRTKSTGQNHLWLFPGAFLRQLQEARVQVGCRELRSTKYISDGQCTSISPLKELVCAGECLPLPVLPNWIGGGYGTKYWSRRSSQEWRCVNDKTRTQRIQLQCQDGSTRTYKITVVTACKCKRYTRQHNESSHNFESMSPAKPAPHHRERKRSSKSSKHSMS", "length": 229, "header": "tr|A0A4X1THK2-1|F1SEJ1_PIG Computationally mapped isoform of Sclerostin domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SOSTDC1 PE=3 SV=1 CANONICAL=F1SEJ1-1" }, "locus": { "chromosome": "9", "start_pos": 85747461, "end_pos": 85744296, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081356.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081356.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066950.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066950.1" } ] } }, { "isoform_ac": "F1SEJ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SEJ1/entry#F1SEJ1-1", "sequence": { "sequence": "MLPPAIHFYLIPLACILMKSCLAFKNDATEILYSHVVKPVPAHTSSNSTMNQARNGGRHFSNTGLDRNTRVQVGCRELRSTKYISDGQCTSISPLKELVCAGECLPLPVLPNWIGGGYGTKYWSRRSSQEWRCVNDKTRTQRIQLQCQDGSTRTYKITVVTACKCKRYTRQHNESSHNFESMSPAKPAPHHRERKRSSKSSKHSMS", "length": 206, "header": "tr|F1SEJ1-1|F1SEJ1_PIG Isoform 1 of Sclerostin domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SOSTDC1 PE=3 SV=1 CANONICAL=F1SEJ1-1" }, "locus": { "chromosome": "9", "start_pos": 85747461, "end_pos": 85744296, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": 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This receptor mediates its action by association with G-proteins that activate a phosphatidylinositol-calcium second messenger system.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1F3X7", "url": "https://www.uniprot.org/uniprotkb/A0A8D1F3X7#function" }, { "database": "UniProtKB", "id": "ARBA00025015", "url": "https://www.uniprot.org/uniprotkb/ARBA00025015#function" }, { "database": "UniProtKB", "id": "F1SDF3", "url": "https://www.uniprot.org/uniprotkb/F1SDF3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDF3", "url": "https://www.uniprot.org/uniprotkb/F1SDF3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GNRHR2", "url": "https://www.uniprot.org/uniprotkb/F1SDF3", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000006685", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006685", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "414423", "url": "https://www.ncbi.nlm.nih.gov/gene/414423", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001658", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001658", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PINCSND", "url": "https://omabrowser.org/oma/group/PINCSND/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24241", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24241", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { 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"RPPHASWNITVQWLAGDIACRTLMFLKLMAMYAAAFLPVVIGLDRQAAVLHPLGPRSAGRKLLGAAWLLSFLLALPQLFLFHTVRRAGPVPFTQCVTKGSFKAQWQETTYNLFTFCCLFLLPLTVMTICYSRIVLSVSSPRTRKGNDAPAGEFTLRRSLDNRPRVRLRALRLALLVLLTFVLCWTPYYLLGLWYWFSPTMLTEVPPSLSHILFLFGLLNAPLDPLLYGAFTLGCRRRHQELSSDSSREGGSGRMHQQESQALRQMEVKTNAAARKAGETKETFL", "length": 284, "header": "tr|A0A8D1F3X7-1|F1SDF3_PIG Computationally mapped isoform of Type II GnRH receptor OS=Sus scrofa OX=9823 GN=GNRHR2 PE=4 SV=1 CANONICAL=F1SDF3-1" }, "locus": { "chromosome": "4", "start_pos": 99415725, "end_pos": 99410409, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007324.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007324.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007129.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007129.3" } ] } }, { "isoform_ac": "F1SDF3-1", "url": "https://www.uniprot.org/uniprotkb/F1SDF3/entry#F1SDF3-1", "sequence": { "sequence": 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"MEATGTDDVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDENELLPARSGCTIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALNIENSDSESWTSNTVKKFTASFEASLSGERELKTPTISLKEKMERYSDDREMQNEIYHRKIISWFGDSPLALFGLHQLIAYGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLKGITIYVAQDCTVYSSDVIDKQCTSMASDNTNDKAVIILVPVRLGGERTNADYLDFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDFPLEMLKISSKEKYPLFTFVNGHSRDYDFTSTTTNEEDLFSEDEKKRIKRFSTEEFVLL", "length": 418 }, "evidence": [ { "id": "F1S810", "url": "https://omabrowser.org/oma/group/F1S810/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8C2LC42-1", "protein_name": "Cysteine protease", "gene_name": "Atg4c", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEASGTDEVDKLKTKFMSAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDENKMLPARSGCTIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEASALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALHIENSDSDSWTSNTVKKFTASFEASLSGERELRTTALSLKETIGKYSDDHAVQNEIYHRKIISWFGDSPVAVFGLHRLIEFGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQGITIYVAQDCTVYNSDVIDKQTNSSTSGDARDKAVIILVPVRLGGERTNTDYLEFVKGVLSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDFPLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFERASEEITKILKISSKEKYPLFTFVNGHSRDFDFTSTAASEEDLFSEDEKTTFKRFSTEEFVLL", "length": 458 }, "evidence": [ { "id": "F1S810", "url": "https://omabrowser.org/oma/group/F1S810/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1M3M0-1", "protein_name": "Cysteine protease", "gene_name": "Atg4c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEASGTDEVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDESKVLPARSGCAIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEASALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALHIESSDSDSWTSNTIHKFTASFEASLSGERELRTPAVSLKETSGKHPDDHAVQSEIYHRQIISWFGDSPVAVFGLHRLIEFGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQGLTIYVAQDCTVYNSDVIDKQTDSVTAGDARDKAVIILVPVRLGGERTNIDYLEFVKGVLSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDFPLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFERASEEITKMLKISSKEKYPLFTFVNGHSRDFDFTSTAASEEDLFLEDEKKNFKRFSTEEFVLL", "length": 458 }, "evidence": [ { "id": "F1S810", "url": "https://omabrowser.org/oma/group/F1S810/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q811C2-1", "protein_name": "Cysteine protease ATG4C", "gene_name": "Atg4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEASGTDEVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDESKMLPARSGCAIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEASALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALHIENADSDSWTSNTVKKFTASFEASLSGDRELRTPAVSLKETSGKCPDDHAVRNEAYHRKIISWFGDSPVAVFGLHRLIEFGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQGLTIYVAQDCTVYNSDVIDKQTDSVTAGDARDKAVIILVPVRLGGERTNTDYLEFVKGVLSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDFPLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFERASEEITKMLKISSKEKYPLFTFVNGHSKDFDFTSTAASEEDLFSEDERKNFKRFSTEEFVLL", "length": 458 }, "evidence": [ { "id": "F1S810", "url": "https://omabrowser.org/oma/group/F1S810/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96DT6-1", "protein_name": "Cysteine protease ATG4C", "gene_name": "ATG4C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEATGTDEVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDEDKTLPAESGCTIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEGSALTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALNIENSDSESWTSHTVKKFTASFEASLSGEREFKTPTISLKETIGKYSDDHEMRNEVYHRKIISWFGDSPLALFGLHQLIEYGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQGITIYVAQDCTVYNSDVIDKQSASMTSDNADDKAVIILVPVRLGGERTNTDYLEFVKGILSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDFPLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFKRASEEITKMLKFSSKEKYPLFTFVNGHSRDYDFTSTTTNEEDLFSEDEKKQLKRFSTEEFVLL", "length": 458 }, "evidence": [ { "id": "F1S810", "url": "https://omabrowser.org/oma/group/F1S810/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S810", "url": "https://www.uniprot.org/uniprotkb/F1S810" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1S810", "url": "https://www.uniprot.org/uniprotkb/F1S810" } ], "pmid": "" }, { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1S810", "url": "https://www.uniprot.org/uniprotkb/F1S810" } ], "pmid": "" }, { "name": "autophagy", "id": "GO:0006914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006914", "evidence": [ { "database": "UniProtKB", "id": "F1S810", "url": "https://www.uniprot.org/uniprotkb/F1S810" } ], "pmid": "" }, { "name": "autophagosome assembly", "id": "GO:0000045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000045", "evidence": [ { "database": "UniProtKB", "id": "F1S810", "url": "https://www.uniprot.org/uniprotkb/F1S810" } ], "pmid": "" }, { "name": "protein processing", "id": "GO:0016485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016485", "evidence": [ { "database": "UniProtKB", "id": "F1S810", "url": "https://www.uniprot.org/uniprotkb/F1S810" } ], "pmid": "" }, { "name": "mitophagy", "id": "GO:0000423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000423", "evidence": [ { "database": "UniProtKB", "id": "F1S810", "url": "https://www.uniprot.org/uniprotkb/F1S810" } ], "pmid": "" }, { "name": "piecemeal microautophagy of the nucleus", "id": "GO:0034727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034727", "evidence": [ { "database": "UniProtKB", "id": "F1S810", "url": "https://www.uniprot.org/uniprotkb/F1S810" } ], "pmid": "" }, { "name": "aggrephagy", "id": "GO:0035973", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035973", "evidence": [ { "database": "UniProtKB", "id": "F1S810", "url": "https://www.uniprot.org/uniprotkb/F1S810" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "cysteine-type peptidase activity", "id": "GO:0008234", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008234", "evidence": [ { "database": "UniProtKB", "id": "F1S810", "url": "https://www.uniprot.org/uniprotkb/F1S810" } ], "pmid": "" }, { "name": "protein-phosphatidylethanolamide deconjugating activity", "id": "GO:0019786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019786", "evidence": [ { "database": "UniProtKB", "id": "F1S810", "url": "https://www.uniprot.org/uniprotkb/F1S810" } ], "pmid": "" }, { "name": "cysteine-type endopeptidase activity", "id": "GO:0004197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004197", "evidence": [ { "database": "UniProtKB", "id": "F1S810", "url": "https://www.uniprot.org/uniprotkb/F1S810" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "67548", "name": "", "equation": "[protein]-C-terminal L-amino acid-glycyl-phosphatidylethanolamide + H2O = [protein]-C-terminal L-amino acid-glycine + a 1,2-diacyl-sn-glycero-3-phosphoethanolamine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "67548", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/67548" } ] }, { "id": "R-SSC-5681987", "name": "LC3 is cleaved by ATG4", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5681987", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5681987" } ] }, { "id": "R-SSC-5682377", "name": "LC3 de-lipidation by ATG4", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, phagophore assembly site membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5682377", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5682377" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S810", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S810" }, { "id": "PF03416", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03416" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase C54 catalytic", "eco_id": "ECO_0000259", "start_pos": 77, "end_pos": 398, "start_aa": "Glu", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UYW2-1", "uniprot_ac": "A0A4X1UYW2", "uniprot_id": "A0A4X1UYW2_PIG", "mass": { "chemical_mass": 8940.0, "monoisotopic_mass": 8940.0 }, "refseq": {}, "gene_names": [ { "name": "COX7A2", "type": "recommended", "evidence": [ { "id": "A0A4X1UYW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UYW2" } ] } ], "protein_names": [ { "name": "Cytochrome c oxidase subunit 7A2", "type": "synonym", "evidence": [ { "id": "A0A4X1UYW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UYW2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UYW2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UYW2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COX7A2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UYW2", "locus": { "chromosome": "1", "start_pos": 90703409, "end_pos": 90696698, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004480", "url": "https://www.ensembl.org/id/ENSSSCG00000004480" } ] } } ], "crossref": [ { "id": "A0A4X1UYW2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1UYW2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004480", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004480", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00928", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00928", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003177", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003177", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036539", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036539", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039297", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039297", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10510", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10510", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10510:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10510:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02238", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02238", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5628897", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-611105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9707564", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9707564", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9864848", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9864848", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1UVY4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UVY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UVY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UVY4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UYW2", "url": 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"id": "IPR036174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036175", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036175", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036180", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036180", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037364", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037364", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037550", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037550", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524115", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524115", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MPWNIIP", "url": "https://omabrowser.org/oma/group/MPWNIIP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SBH2", "url": "https://www.orthodb.org/?gene=F1SBH2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11141", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11141", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11141:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11141:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00626", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00626", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04811", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04811", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04815", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04815", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08033", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08033", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001254761", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001254761", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ANP4", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287API3", "url": "https://www.uniprot.org/uniprotkb/A0A287API3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287API3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287API3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F797", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F797", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F797-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F797-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBH2", "url": "https://www.uniprot.org/uniprotkb/F1SBH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBH2-1", "url": "https://www.uniprot.org/uniprotkb/F1SBH2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAILNPLCQVDYRAKLWACNFCFQRNQFPPAYAGISEVNQPAELMPQFSTIEYVIQRGAQSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPMQPARPAQPQDQPFISSRFLQPVHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGPGMVVGDELKVPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGLLEMKCCTNLTGGHMVMGDSFNTSLFKQTFQRIFSKDFNGNFRMAFGATLEVKTSRELKIAGAIGPCVSLNMRGPCVSENELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNAPVPQGGRGAIQFVTHYQHSSTQRRIRVTTIARNWADAQSQLKHIEAAFDQEAAAVLMARLGVFRTESEEGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFLLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC", "length": 767, "header": "tr|F1SBH2-1|F1SBH2_PIG Isoform 1 of Protein transport protein SEC23 OS=Sus scrofa OX=9823 GN=SEC23B PE=1 SV=1 CANONICAL=F1SBH2-1" }, "isoforms": [ { "isoform_ac": "A0A287ANP4-1", "url": "https://www.uniprot.org/uniprotkb/F1SBH2/entry#A0A287ANP4-1", "sequence": { "sequence": "MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAILNPLCQVDYRAKLWACNFCFQRNQFPPAYAGISEVNQPAELMPQFSTIEYVIQRGAQSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPMQPARPAQPQDQPFISSRFLQPVHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGPGMVVGDELKVPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGLLEMKCCTNLTGGHMVMGDSFNTSLFKQTFQRIFSKDFNGNFRMAFGATLEVKRSYLVVSLGEELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNAPVPQGGRGAIQFVTHYQHSSTQRRIRVTTIARNWADAQSQLKHIEAAFDQEAAAVLMARLGVFRTESEEGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFLLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC", "length": 750, "header": "tr|A0A287ANP4-1|F1SBH2_PIG Computationally mapped isoform of Protein transport protein SEC23 OS=Sus scrofa OX=9823 GN=SEC23B PE=1 SV=1 CANONICAL=F1SBH2-1" }, "locus": { "chromosome": "17", "start_pos": 26800701, "end_pos": 26763368, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039781.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039781.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045509.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045509.2" } ] } }, { "isoform_ac": "A0A287API3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBH2/entry#A0A287API3-1", "sequence": { "sequence": "MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAILNPLCQVDYRAKLWACNFCFQRNQFPPAYAGISEVNQPAELMPQFSTIEYVIQRGAQSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPMQPARPAQPQDQPFISSRFLQPVHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGPGMVVGDELKVPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGLLEMKCCTNLTGGHMVMGDSFNTSLFKQTFQRIFSKDFNGNFRMAFGATLEVKELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNAPVPQGGRGAIQFVTHYQHSSTQRRIRVTTIARNWADAQSQLKHIEAAFDQEAAAVLMARLGVFRTESEEGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFLLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC", "length": 740, "header": "tr|A0A287API3-1|F1SBH2_PIG Computationally mapped isoform of Protein transport protein SEC23 OS=Sus scrofa OX=9823 GN=SEC23B PE=1 SV=1 CANONICAL=F1SBH2-1" }, "locus": { "chromosome": "17", "start_pos": 26800701, "end_pos": 26763368, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043508.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043508.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045935.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045935.1" } ] } }, { "isoform_ac": "A0A8W4F797-1", "url": "https://www.uniprot.org/uniprotkb/F1SBH2/entry#A0A8W4F797-1", "sequence": { "sequence": "MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAILNPLCQVDYRAKLWACNFCFQRNQFPPAYAGISEVNQPAELMPQFSTIEYVIQDMLGLTKPAMPMQPARPAQPFLQPVHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGPGMVVGDELKVPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGLLEMKCCTNLTGGHMVMGDSFNTSLFKQTFQRIFSKDFNGNFRMAFGATLEVKRSYLVVSLGEELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNAPVPQGGRGAIQFVTHYQHSSTQRRIRVTTIARNWADAQSQLKHIEAAFDQEAAAVLMARLGVFRTESEEGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFLLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC", "length": 662, "header": "tr|A0A8W4F797-1|F1SBH2_PIG Computationally mapped isoform of Protein transport protein SEC23 OS=Sus scrofa OX=9823 GN=SEC23B PE=1 SV=1 CANONICAL=F1SBH2-1" }, "locus": { "chromosome": "17", "start_pos": 26800701, "end_pos": 26763368, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101788.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101788.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075084.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075084.1" } ] } }, { "isoform_ac": "F1SBH2-1", "url": "https://www.uniprot.org/uniprotkb/F1SBH2/entry#F1SBH2-1", "sequence": { "sequence": "MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAILNPLCQVDYRAKLWACNFCFQRNQFPPAYAGISEVNQPAELMPQFSTIEYVIQRGAQSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPMQPARPAQPQDQPFISSRFLQPVHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGPGMVVGDELKVPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGLLEMKCCTNLTGGHMVMGDSFNTSLFKQTFQRIFSKDFNGNFRMAFGATLEVKTSRELKIAGAIGPCVSLNMRGPCVSENELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNAPVPQGGRGAIQFVTHYQHSSTQRRIRVTTIARNWADAQSQLKHIEAAFDQEAAAVLMARLGVFRTESEEGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFLLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC", "length": 767, "header": "tr|F1SBH2-1|F1SBH2_PIG Isoform 1 of Protein transport protein SEC23 OS=Sus scrofa OX=9823 GN=SEC23B PE=1 SV=1 CANONICAL=F1SBH2-1" }, "locus": { "chromosome": "17", "start_pos": 26800701, "end_pos": 26763368, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059520.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059520.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047966.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047966.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F797", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F797" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524115", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524115", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HE66-1", "protein_name": "Protein transport protein SEC23", "gene_name": "Sec23b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAILNPLCQVDYRAKLWACNFCFQRNQFPPAYTGISEVNQPAELMPQFSTIEYMIQRGARSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQDMLGLTKSAMPMQQARPAQPQEQPFVSSRFLQPVHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGPGMVVGDELKTPIRSWHDIEKDNARFMKKATKHYEMLANRTATNGHCIDIYACALDQTGLLEMKCCPNLTGGHMVMGDSFNTSLFKQTFQRIFSKDFNGDFRMAFGATLEVKTSRELKIAGAIGPCVSLNVKGPCVSENELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSTQKRIRVTTIARNWADAQSQLRHIEAAFDQEAAAVLMARLGVFRAESEEGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFLLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAS", "length": 767 }, "evidence": [ { "id": "F1SBH2", "url": "https://omabrowser.org/oma/group/F1SBH2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I5ZKS5-1", "protein_name": "Protein transport protein SEC23", "gene_name": "Sec23b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAILNPLCQVDYRAKLWACNFCFQRNQFPPAYAGISEVNQPAELMPQFSTIEYMIQRGARSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQEMLGLTKSAMPVQQVRPGQPQEQSAVSSRFLQPVHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGPGMVVGDELKTPIRSWHDIEKDNARFMKKATKHYEMLANRTATNGHCIDIYACALDQTGLLEMKCCPNLTGGLMVMGDSFNTSLFKQTFQRIFSKDFNGDFRMAFGATLEVKTSRELKIAGAIGPCVSLNVKGPCVSENELGVGGTSQWKICGLDPSSTLGIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSTQKRIRVTTIARNWADAQSQLRHIEAAFDQEAAAVLMARLGVFRAESEEGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFLLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAS", "length": 767 }, "evidence": [ { "id": "F1SBH2", "url": "https://omabrowser.org/oma/group/F1SBH2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q15437-1", "protein_name": "Protein transport protein Sec23B", "gene_name": "SEC23B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAVLNPLCQVDYRAKLWACNFCFQRNQFPPAYGGISEVNQPAELMPQFSTIEYVIQRGAQSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPMQQARPAQPQEHPFASSRFLQPVHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGPGMVVGDELKIPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGLLEMKCCANLTGGYMVMGDSFNTSLFKQTFQRIFTKDFNGDFRMAFGATLDVKTSRELKIAGAIGPCVSLNVKGPCVSENELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNTPIPQGGRGAIQFVTHYQHSSTQRRIRVTTIARNWADVQSQLRHIEAAFDQEAAAVLMARLGVFRAESEEGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFLLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC", "length": 767 }, "evidence": [ { "id": "F1SBH2", "url": "https://omabrowser.org/oma/group/F1SBH2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3SZN2-1", "protein_name": "Protein transport protein Sec23B", "gene_name": "SEC23B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAILNPLCQVDYRAKLWACNFCFQRNQFPPAYAGISEVNQPAELMPQFSTIEYVIQRGAPSPLIFLYVVDTCLEDDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPVQPMRPAQPQERPSVSSRFLQPIHKIDMNLTDLLGELQRDPWPVPQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGPGMVVGDELKVPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRIFSKDFNGNFRMAFGATLEVKTSRELKVAGAIGPCVSLNVKGPCVSENELGVGGTSQWKICGLDPTTTLGIYFEVVNQHNAPIPQGGRGAIQFVTHYQHSSTQRRIRVTTVARNWADVQSQLKHIEAAFDQEAAAVLMARLGVFRAETEEGPDVLRWLDRQLIRLCQKFGQYNKEDPMSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYIHTEHGGSQARFLLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC", "length": 767 }, "evidence": [ { "id": "F1SBH2", "url": "https://omabrowser.org/oma/group/F1SBH2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5ZK03-1", "protein_name": "Protein transport protein Sec23A", "gene_name": "SEC23A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLRERPDLPPVQYEPVLCSRPTCKAVLNPLCQVDYRAKLWACNFCFQRNQFPPAYAGISEVNQPAELMPQFSTIEYIVQRGPQTPLIFLYVVDTCLEEEDLQALKESLQMSLSLLPADALVGLITFGRMIQVHELSCEGISKSYVFRGTKDLTAKQIQDMLGLSRPAVPIQQGRPLQAPEQPVISSRFLQPVHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGPGMVVGDELKTPIRSWHDIEKDNARFMKKATKHYETLANRTATNGHCIDIYACALDQTGLLEMKCCANLTGGHMVMGDSFNTSLFKQTFQRVFNKGLNGEFRMAFGANLEVKTSRELKIAGAIGPCVSLNVKGPCVSENELGIGGTSQWKICGLDPCTTLAIYFEVVNQHNAPIPQGGRGAVQFVTQYQHSSTQKRIRVTTIARNWADAQSQLQHIEAAFDQEAAAVLMARLGVYRAESEEGPDVLRWLDRQLIRLCQKFGQYNKDDPNSFRLSESFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYAYSFHGPPEPVLLDSSSILPDRILLMDTFFQIVIYLGETIAQWQKAGYQDMPEYENFKHLLQAPLDDAQEILQTRFPMPRYVHTEHGGSQARFLLSKVNPSQTHNNLYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA", "length": 767 }, "evidence": [ { "id": "F1SBH2", "url": "https://omabrowser.org/oma/group/F1SBH2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9D662-1", "protein_name": "Protein transport protein Sec23B", "gene_name": "Sec23b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAILNPLCQVDYRAKLWACNFCFQRNQFPPAYAGISEVNQPAELMPQFSTIEYMIQRGARSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQEMLGLTKSAMPVQQARPAQPQEQPFVSSRFLQPIHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGPGMVVGDELKTPIRSWHDIEKDNARFMKKATKHYEMLANRTATNGHCIDIYACALDQTGLLEMKCCPNLTGGHMVMGDSFNTSLFKQTFQRIFSKDFNGDFRMAFGATLDVKTSRELKIAGAIGPCVSLNVKGPCVSENELGVGGTSQWKICGLDPSSTLGIYFEVVNQHNAPVPQGGRGAIQFVTQYQHSSTQKRIRVTTIARNWADAQSQLRHIEAAFDQEAAAVLMARLGVFRAESEEGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFLLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAS", "length": 767 }, "evidence": [ { "id": "F1SBH2", "url": "https://omabrowser.org/oma/group/F1SBH2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SIJ7-1", "protein_name": "Protein transport protein SEC23 C", "gene_name": "SEC23C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAEFGELEAQDGVRMPWNIIPVATKKEQSIDSEVPVSAIYTPLKPLRSQSLLLPYSPLRCRTCRSVLNPYSVVDFSACNWGCPFCFNRNPFPLNYSSVADNNLPPELFPHSTTVEYLCDSFSSPSPPVFLFVVDTCLISEELDFLKSSLFQALDLLPDTSILGLITFDSLVRVYELGFPHCTKSYFFHGNKDCTKDQLLDQLSFFVKNPKPSSGVIAGARDGLSSDDIARFLLPASDCHFTLHSVLEELGNSPWPVAADHRPARCTGVALRIAASLLGACFPGSAARIMAFIGGPSTQGPGAIVSRELSDPIRSHKDIDKDSAMYYHKAVEFYEMLAKQLVHQGHVLDVFASSVDQVGIAELKVAVEQTGGFVVLAESFGHSVFRDSLKRVCQSGENDLGLSSCGIFEINCSKDIKVQGIIGPCASLEKKGPLCSDTAIGQGHTSAWKMCGLDNNTSICLVFEIAKIDTADVVLQSQSNQFYFQFLTYYQHSNGQTRLRVTTLSRRWVMGTESLQELSNGFDQEAAAVVMARLISSKMETQPEFNPQRWVDKALINLCTWFGDYQKGNPSSFSLSSQLSIFPQFVFHLRRSQFVQVFNNSPDETAYFRMILYRENVSNSVVMIQPSLISFSFHSPPEPILLDVASIAADRILLLDSYFTLVIFHGSTIAQWRKAGYHNQPEHQAFGHLLQSPRDYADTIMSERFPTPRLVICDQYGSQARFLLAKLNPCDGDAHFSGQSNVFTDDVSLSVFLDHLRRLIVH", "length": 761 }, "evidence": [ { "id": "F1SBH2", "url": "https://omabrowser.org/oma/group/F1SBH2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SBH2", "url": "https://www.uniprot.org/uniprotkb/F1SBH2" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SBH2", "url": "https://www.uniprot.org/uniprotkb/F1SBH2" } ], "pmid": "" }, { "name": "COPII vesicle coat", "id": "GO:0030127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030127", "evidence": [ { "database": "UniProtKB", "id": "F1SBH2", "url": "https://www.uniprot.org/uniprotkb/F1SBH2" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1SBH2", "url": "https://www.uniprot.org/uniprotkb/F1SBH2" } ], "pmid": "" }, { "name": "endoplasmic reticulum exit site", "id": "GO:0070971", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070971", "evidence": [ { "database": "UniProtKB", "id": "F1SBH2", "url": "https://www.uniprot.org/uniprotkb/F1SBH2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "F1SBH2", "url": "https://www.uniprot.org/uniprotkb/F1SBH2" } ], "pmid": "" }, { "name": "COPII-coated vesicle budding", "id": "GO:0090114", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090114", "evidence": [ { "database": "UniProtKB", "id": "F1SBH2", "url": "https://www.uniprot.org/uniprotkb/F1SBH2" } ], "pmid": "" }, { "name": "COPII-coated vesicle cargo loading", "id": "GO:0090110", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090110", "evidence": [ { "database": "UniProtKB", "id": "F1SBH2", "url": "https://www.uniprot.org/uniprotkb/F1SBH2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SBH2", "url": "https://www.uniprot.org/uniprotkb/F1SBH2" } ], "pmid": "" }, { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "F1SBH2", "url": "https://www.uniprot.org/uniprotkb/F1SBH2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 338, "end_pos": 340, "annotation": "n_glycosylation_sequon" }, { "start_pos": 367, "end_pos": 369, "annotation": "n_glycosylation_sequon" }, { "start_pos": 380, "end_pos": 382, "annotation": "n_glycosylation_sequon" }, { "start_pos": 596, "end_pos": 598, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH2" }, { "id": "PF00626", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00626" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Gelsolin-like", "eco_id": "ECO_0000259", "start_pos": 634, "end_pos": 720, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SBH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH2" }, { "id": "PF08033", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08033" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sec23/Sec24 beta-sandwich", "eco_id": "ECO_0000259", "start_pos": 403, "end_pos": 506, "start_aa": "Ala", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SBH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH2" }, { "id": "PF04815", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04815" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sec23/Sec24 helical", "eco_id": "ECO_0000259", "start_pos": 520, "end_pos": 618, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SBH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH2" }, { "id": "PF04811", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04811" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sec23/Sec24 trunk", "eco_id": "ECO_0000259", "start_pos": 127, "end_pos": 392, "start_aa": "Ser", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SBH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH2" }, { "id": "PF04810", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04810" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Zinc finger Sec23/Sec24-type", "eco_id": "ECO_0000259", "start_pos": 58, "end_pos": 98, "start_aa": "Pro", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 241, "end_pos": 243 }, { "start_pos": 338, "end_pos": 340 }, { "start_pos": 367, "end_pos": 369 }, { "start_pos": 380, "end_pos": 382 }, { "start_pos": 596, "end_pos": 598 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S953-1", "uniprot_ac": "F1S953", "uniprot_id": "F1S953_PIG", "mass": { "chemical_mass": 34047.0, "monoisotopic_mass": 34047.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100525650", "type": "recommended", "evidence": [ { "id": "F1S953", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S953" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1S953", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S953/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F8T2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8T2#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" }, { "database": "UniProtKB", "id": "A0A8W4FKW8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKW8#function" }, { "database": "UniProtKB", "id": "F1S953", "url": "https://www.uniprot.org/uniprotkb/F1S953#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S953", "url": "https://www.uniprot.org/uniprotkb/F1S953" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100525650", "url": "https://www.uniprot.org/uniprotkb/F1S953", "locus": {} } ], "crossref": [ { "id": "F1S953", "url": "https://alphafold.ebi.ac.uk/entry/F1S953", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4F8T2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8T2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8T2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8T2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKW8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKW8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S953", "url": "https://www.uniprot.org/uniprotkb/F1S953", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S953-1", "url": "https://www.uniprot.org/uniprotkb/F1S953-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGANHSRVSEFVLLGLTDSPELQIFFFVMFSLFYLMSILGNCLILLTVLFSPHLHSPMYFLLSNLSLIDMCLSSFATPKMIVDIFAQHKTISFEGCISQIFFLHLFTGTEIVLLISMSFDRCIAICKPLHYSSVMSQSMCVGLVVASWTVGFLHTMTQLAFTLYLPFCGPNVVDSFFCDLPLVIQLTCIDTYILGIFMISTSGMIALISFLLLLTSYITVLVTIKDHSSSGSSKALSTCTAHFIVVSMFFGPCIFIYVNQEVKTAVKKKLIRQVKKGRNVLLPHIHSLEKINIFKILTSCLKF", "length": 304, "header": "tr|F1S953-1|F1S953_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100525650 PE=3 SV=4 CANONICAL=F1S953-1" }, "isoforms": [ { "isoform_ac": "A0A8W4F8T2-1", "url": "https://www.uniprot.org/uniprotkb/F1S953/entry#A0A8W4F8T2-1", "sequence": { "sequence": "MEGANHSRVSEFVLLGLTDSPELQIFFFVMFSLFYLMSILGNCLILLTVLFSPHLHSPMYFLLSNLSLIDMCLSSFATPKMIVDIFAQHKTISFEGCISQIFFLHLFTGTEIVLLISMSFDRCIAICKPLHYSSVMSQSMCVGLVVASWTVGFLHTMTQLAFTLYLPFCGPNVVDSFFCDLPLVIQLTCIDTYILGIFMISTSGMIALISFLLLLTSYITVLALSTCTAHFIVVSMFFGPCIFIYVNQEVKTAVKKKLSNQYLNIGKTTPMYSFKFMKRRRQG", "length": 283, "header": "tr|A0A8W4F8T2-1|F1S953_PIG Computationally mapped isoform of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100525650 PE=3 SV=1 CANONICAL=F1S953-1" }, "locus": { "chromosome": "AEMK02000253.1", "start_pos": 63409, "end_pos": 62331, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093142.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093142.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075683.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075683.1" } ] } }, { "isoform_ac": "A0A8W4FKW8-1", "url": "https://www.uniprot.org/uniprotkb/F1S953/entry#A0A8W4FKW8-1", "sequence": { "sequence": "MEGANHSRVSEFVLLGLTDSPELQIFFFVMFSLFYLMSILGNCLILLTVLFSPHLHSPMYFLLSNLSLIDMCLSSFATPKMIVDIFAQHKTISFEGCISQIFFLHLFTGTEIVLLISMSFDRCIAICKPLHYSSVMSQSMCVGLVVASWTVGFLHTMTQLAFTLYLPFCGPNVVDSFFCDLPLVIQLTCIDTYILGIFMISTSGMIALISFLLLLTSYITVLALSTCTAHFIVVSMFFGPCIFIYVNQEVKTAVKKKLIRQVKKGRNVLLPHIHSLEKINIFKILTSCLKF", "length": 291, "header": "tr|A0A8W4FKW8-1|F1S953_PIG Computationally mapped isoform of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100525650 PE=3 SV=1 CANONICAL=F1S953-1" }, "locus": { "chromosome": "AEMK02000253.1", "start_pos": 63409, "end_pos": 60378, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103756.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103756.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080121.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080121.1" } ] } }, { "isoform_ac": "F1S953-1", "url": "https://www.uniprot.org/uniprotkb/F1S953/entry#F1S953-1", "sequence": { "sequence": "MEGANHSRVSEFVLLGLTDSPELQIFFFVMFSLFYLMSILGNCLILLTVLFSPHLHSPMYFLLSNLSLIDMCLSSFATPKMIVDIFAQHKTISFEGCISQIFFLHLFTGTEIVLLISMSFDRCIAICKPLHYSSVMSQSMCVGLVVASWTVGFLHTMTQLAFTLYLPFCGPNVVDSFFCDLPLVIQLTCIDTYILGIFMISTSGMIALISFLLLLTSYITVLVTIKDHSSSGSSKALSTCTAHFIVVSMFFGPCIFIYVNQEVKTAVKKKLIRQVKKGRNVLLPHIHSLEKINIFKILTSCLKF", "length": 304, "header": "tr|F1S953-1|F1S953_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100525650 PE=3 SV=4 CANONICAL=F1S953-1" }, "locus": { "chromosome": "AEMK02000253.1", "start_pos": 63409, "end_pos": 60378, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002853.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002853.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002780.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002780.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F8T2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8T2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1S953", "url": "https://www.uniprot.org/uniprotkb/F1S953" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1S953", "url": "https://www.uniprot.org/uniprotkb/F1S953" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S953", "url": "https://www.uniprot.org/uniprotkb/F1S953" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S953-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 304, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S953-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S953" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S953", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S953" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 295, "start_aa": "Gly", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S7C7-1", "uniprot_ac": "F1S7C7", "uniprot_id": "F1S7C7_PIG", "mass": { "chemical_mass": 70707.0, "monoisotopic_mass": 70707.0 }, "refseq": {}, "gene_names": [ { "name": "CILK1", "type": "recommended", "evidence": [ { "id": "F1S7C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7C7" } ] } ], "protein_names": [ { "name": "non-specific serine/threonine protein kinase", "type": "recommended", "evidence": [ { "id": "F1S7C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7C7/entry#names_and_taxonomy" } ] }, { "name": "2.7.11.1", "type": "synonym", "evidence": [ { "id": "F1S7C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7C7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S7C7", "url": "https://www.uniprot.org/uniprotkb/F1S7C7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CILK1", "url": "https://www.uniprot.org/uniprotkb/F1S7C7", "locus": { "chromosome": "7", "start_pos": 46658681, "end_pos": 46723585, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002628", "url": "https://www.ensembl.org/id/ENSSSCG00000002628" } ] } } ], "crossref": [ { "id": "F1S7C7", "url": "https://alphafold.ebi.ac.uk/entry/F1S7C7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002628", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002628", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07830", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07830", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050117", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050117", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24055", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24055", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": "https://www.rhea-db.org/rhea/46608", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FAH9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAH9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7C7", "url": "https://www.uniprot.org/uniprotkb/F1S7C7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7C7-1", "url": "https://www.uniprot.org/uniprotkb/F1S7C7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNRYTTIKQLGDGTYGSVLLGRSIESGELIAIKKMKRKFYSWEECMNLREVKSLKKLNHANVVKLKEVIRENDHLYFIFEYMKENLYQLIKERNKLFPESAIRNIMYQILQGLAFIHKHGFFHRDLKPENLLCMGPELVKIADFGLAREIRSRPPYTDYVSTRWYRAPEVLLRSTNYSSPIDIWAVGCIMAEVYTLRPLFPGASEIDTIFKICQVLGTPKKTDWPEGYQLSSAMNFRWPQCVPNNLKTLIPNASSEAVQLLRDMLQWDPKKRPTASQALRYPYFQIGHPLGSTTQSLQSSGKPQKDVLEKAGPPPHLKPVPPAQPPTKPHTRISSRPHQASHPPQHLVYPYKAEASRTDHLPEDKPSPLLLPSLHTKHPQAKMLTGLEHKNGEIKPKSRRRWGLVSRSTKDSDDWAELDDSDFSPSFTGIDLKNKRQSDETLCRFESVLDLKPSEPVSTGSSAPTQGSYPRRDTPTLRSAAKQHYLKHSRYLPGINIRNGILPNPGKDFIPSNPWSSSGLSGKSSGTVSVISKINSVGSCSTSSSGLAGNYIPSFLKKEIGSAMQRVHLAPVPDPPPGYSSLKAVRPHPGRPFFHTQPRSTPGLLPRPPAAQPVHGRTDWVSKYASRR", "length": 628, "header": "tr|F1S7C7-1|F1S7C7_PIG Isoform 1 of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=CILK1 PE=3 SV=3 CANONICAL=F1S7C7-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FAH9-1", "url": "https://www.uniprot.org/uniprotkb/F1S7C7/entry#A0A8W4FAH9-1", "sequence": { "sequence": "MNRYTTIKQLGDGTYGSVLLGRSIESGELIAIKKMKRKFYSWEECMNLREVKSLKKLNHANVVKLKEVIRENDHLYFIFEYMKENLYQLIKERNKLFPESAIRNIMYQILQGLAFIHKHGFFHRDLKPENLLCMGPELVKIADFGLAREIRSRPPYTDYVSTRWYRAPEVLLRSTNYSSPIDIWAVGCIMAEVYTLRPLFPGASEIDTIFKICQVLGTPKKTDWPEGYQLSSAMNFRWPQCVPNNLKTLIPNASSEAVQLLRDMLQWDPKKRPTASQALRYPYFQIGHPLGSTTQSLQSSGKPQKDVLEKAGPPPHLKPVPPAQPPTKPHTRISSRPHQASHPPQHLVYPYKAEASRTDHLPEDKPSPLLLPSLHTKHPQAVSRASPKMLTGLEHKNGEIKPKSRRRWGLVSRSTKDSDDWAELDDSDFSPSFTGIDLKNKRQSDETLCRFESVLDLKPSEPVSTGSSAPTQGSYPRRDTPTLRSAAKQHYLKHSRYLPGINIRNGILPNPGKDFIPSNPWSSSGLSGKSSGTVSVISKINSVGSCSTSSSGLAGNYIPSFLKKEIGSAMQRVHLAPVPDPPPGYSSLKAVRPHPGRPFFHTQPRSTPGLLPRPPAAQPVHGRTDWVSKYASRR", "length": 634, "header": "tr|A0A8W4FAH9-1|F1S7C7_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=CILK1 PE=3 SV=1 CANONICAL=F1S7C7-1" }, "locus": { "chromosome": "7", "start_pos": 46701044, "end_pos": 46662261, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095815.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095815.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075302.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075302.1" } ] } }, { "isoform_ac": "F1S7C7-1", "url": "https://www.uniprot.org/uniprotkb/F1S7C7/entry#F1S7C7-1", "sequence": { "sequence": 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"https://www.ensembl.org/id/ENSSSCT00000002916.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002837.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002837.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FAH9", "url": 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"https://www.ebi.ac.uk/interpro/entry/IPR056863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511642", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511642", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LAKQLEX", "url": "https://omabrowser.org/oma/group/LAKQLEX/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480RXN2", "url": "https://www.orthodb.org/?gene=A0A480RXN2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SBB3", "url": "https://www.orthodb.org/?gene=F1SBB3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10574", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10574", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10574:SF285", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10574:SF285", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15036", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15036", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15036:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15036:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00052", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00052", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00053", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00053", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00054", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00054", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00055", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00055", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06008", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06008", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06009", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06009", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24973", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24973", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1474228", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1474228", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2022090", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022090", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3000157", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000157", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-446107", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446107", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9913351", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9913351", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003482090", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482090", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480RXN2", "url": "https://www.uniprot.org/uniprotkb/A0A480RXN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480RXN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A480RXN2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FB96", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FB96-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB96-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBB3", "url": "https://www.uniprot.org/uniprotkb/F1SBB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBB3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBB3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRQEDSAGGMAAAAQARGWASRSGLPLLLRLLLLLLPPAVCPAARGPPTPAQLSLHPPYFNLAEAARIWATATCGEREPDGARPRPELYCKLVGGPTAPGSGQTIQGQFCDYCNSEDPRKAHPVTNAIDGSERWWQSPPLSSGTQYNQVNVTLDLGQLFHVAYVLIKFANSPRPDLWVLERSVDFGSTYSPWQYFAHSKVDCLEQFGRKANMAITRDDDVLCTTEYSRIVPLENGEVVVSLINGRPGAKNFTFSHTLREFTKATNIRLRFLRTNTLLGHLISKAQRDPTVTRRYYYSIKDISIGGRCVCNGHADVCNANNPEKLFRCECQHHTCGETCDRCCAGYNQRRWRPATWEESSACEACNCHGHAIDCYYDPDVERQQASLNIQGIYAGGGVCINCQHNTAGVNCEKCAKGYYRPYGVPVHAPDGCIPCRCNPEHAEACEQGSGRCTCKFNFRGDHCEECAAGYYHFPFCLRIPIFPASTPSPKGPVAGDLKGCDCNLEGVLPEICDAQGRCLCRPGVGGPRCDACRPGFYSFPICQACQCSALGSYQMPCSPVTGQCECQPGITGQRCDRCLSGASDFPHCQGFSGACDPAGTLDSSLGFCQCKLHVESPTCSICKPLYWNLAKENPDGCSECRCHVAGTVSGIGECGQLDGDCHCKSHVGGDSCDTCEDGYFALEKSNYFGCQGCQCDIGGAVTPMCSGPSGVCQCREHVVGKVCQRPENNYYFPDLHHMKYEIEDGTAPDGRALRFGFDPLEFPGFSWRGYAQMTTLQNEVRIVMNVGKSSLSLFRVVLRYINPGTEAVSGRVTIYPSWAKAGVAQSKEIIFQPSKEPAFVTVPGNGFADPFSIVPGTWIACIKAEGVLLDYLVLLPRDYYEAPLLQLPVSEPCADTGPPQENCLLYQHLPVTRFPCALACEASHFLLDGEPRPLAVRQPTPGHPVMADLSGREVELRLRLRVPRVGHYVVMLEYATEADQLSEVTVHVQSPGAMLAGWADIYSCKYSILCRSAVTDGRSGLAVYELLADADIRLKAWTARFLLHQICIIPIEEFSTEYLRPQVKCIASYGQFVNQSAACISLVPETPLTALILDVPHGGPFPLLPQDPSPSTAAVTGIILKAPQDQVTLRGLVPHPGRYVIVIHFYQPAHPTFLAQVSVDGGQLQPGVFRASFCPHVLGCQDHMMVGNQVEFDISEPEVAVTVKVPEGRSLVLVRVLVVPVENYDYQILHRKSVDKSFEFITSCGGDSFYIDPQKASGFCKNSARSLVALYHEGALPCECHPAGAVGRHCSPEGGQCPCRPHVIGRQCTRCQMGYYGFPHCKPCSCGQRLCEETTGTCLCPPRTVRPQCDMCETHSFSFHPLAGCEGCNCSRMGTDGSASPECDRDHGQCRCKLRISGRQCDRCAPGFYRFPECLPCRCNRDGTEPGICDPETGACLCKENVEGTECDACREGSFDLDPANPKGCTRCFCFGVSHHCHSTQKRRAKFVDMMGWRLETADGVDIPVSFNPGSSSVVADLQELPSTVHSASWVAPPSYLGDKVSSYGGYLTYQIKSFGLPGDMVLLEKKPDVQLTGQHMSVIYDEPNPPRPDRLHHARVQVVEANFRHASSRAPVSREELMIVLSRLEGVRLRGLYFTETQRLTLSGVGLEEASDTGSGRHAHNVEMCACPPDYTGDSCQGCSPGYYRDNKGFYTGRCVPCNCHGHSNRCKDGSGICINCQHNTAGEHCERCKEGYYGNAIHGSCQACLCPHSNSFATGCIVTGGNMRCLCKPGYTGTLCERCAPGYFGNPQKFGGSCQPCNCNSNGQLVSCDPLTGDCMNQEPKDSGPGEECDDCDSCVMTLLNDLATMDDELRLVKSQLQGLSVSSRTLEQMRHLETQTKDLRNQLLNYRSTISSQESKMDGLEEELSNLNLEFEAFQEKVQINSRKAQTLYNVVDRAIQSAEELNTKIKNAIYNVHILMEQISGTGGEGNRVPSGDFSRELAEAKSMMEELRSRNFGKQLREAEAEKTEAQLLLNRIRSWLEKHQVENNGLVKNIQDALNEYEAKLSDLRTTMQEASAQAKRAAGLNRDNERALESITKQVKEMKSLQSDFTKHLTTAEASLMQTNTVLQLMRKIHEEYKKTAATLNEARQELSDKVRELSKSSSKEPLVEEAEKHSQSLQALAKQLEEIKRNTSGDELVRCAVDAATAYENILNAITAAEDAADKAARASESALQTVIKEDLPRKAKTLSSGSHKLLNEAKRTQTKLQQEISPALSNLQQTLKIMTVQKGMINTNLTTIRNDLRGIQRDDISGIISSAKTLVRNANDITNEVLDGLSPIQTDVERIKDTYGSTQREDFNQALTDADNSVRKLTNKLPDVLSKIESINQQLLPLGNISDNVDRIRELIQQARDAANKVAIPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPESAEHGSTENMFVMYLGNKDASRDYIGMAVVDGQLMCVYNLGEQEAELQVDQTLTKSETQEAVMDRVKFQRIYQFARLNYTQKATSSKPEAPQLHDVDSKSSNTLLNLDPENVVFYVGGYPSDFRLPSRLRFPPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRKDESDKNYFEGTGYARIPTQSNAANPFFTQIIQTTVDSGLLFFAENQDCFMSLNIEGGRLMVRYKVDSGPPKEKEIGAIVNDGKDHLISVRISRLQKRMRIRMDSLSSIEGDAFDFSTYYLGGIPISIRERFNISTPAFRGCMKNLRKTSGVVRLNDTVGVTKRCSEDWKLVRSASFSRGGQLSFTNLDWPSPSHFQASFGFQTFQPSGILLNHQTRSSSLQVTLEDGHIELSTRDSSGPILTSPQTYMDGLLHYVSVISDNSGLRLLIDDQPLKNNQKLRDFSDSQQSLRLGGSQFEGCISNVFVRRLMESPKVLDLASKSTKRDVSLGGCSLNKPPFLMLLKGSTKFNKAKTFDIHQPLRDTAAASSRSLKVWGDAQSCPPSPGAKASHGALRFGDSPTSHLLFILPQELPKPRSQFAVDVQTTSSRGLVFYTGTKTSFMALYLSKGRLVFALGAEGKKLKLKSKERCNDGKWHTVVFGHDGERGRLVMDGLRAREGSLPGNSTISLRAPVYLGASPSGKSKSLPQNSFVGCLRNFQLDLKPLETPSASLGVSPCLGGSLEKGIYFSQEGGHVILANSVFLGPEFKLVFSIRPRSLTGILIHIGSQPGEHLCVYLEAGKVTASVSSEAGGILTSVTPKQSLCDGQWHSVAVTIKQHIVHLELDSEHSYTAGRHPFSPARTKEHLHIGDVPDNLKTLKLPVWKSFFGCLKNIQVNHVPIPVTEATQVQGTVSLNGCPDH", "length": 3345, "header": "tr|F1SBB3-1|F1SBB3_PIG Isoform 1 of Laminin subunit alpha-3 OS=Sus scrofa OX=9823 GN=LAMA3 PE=4 SV=3 CANONICAL=F1SBB3-1" }, "isoforms": [ { "isoform_ac": "A0A480RXN2-1", "url": "https://www.uniprot.org/uniprotkb/F1SBB3/entry#A0A480RXN2-1", "sequence": { "sequence": "MPGTGMPAAVRQSAWSARWLWLFGVALGPCLGYSSQQQRVVFPQLPAQNQLQTSYVESKPSQGCSPGYYRDNKGFYTGRCVPCNCHGHSNRCKDGSGICINCQHNTAGEHCERCKEGYYGNAIHGSCQACLCPHSNSFATGCIVTGGNMRCLCKPGYTGTLCERCAPGYFGNPQKFGGSCQPCNCNSNGQLVSCDPLTGDCMNQEPKDSGPGEECDDCDSCVMTLLNDLATMDDELRLVKSQLQGLSVSSRTLEQMRHLETQTKDLRNQLLNYRSTISSQESKMDGLEEELSNLNLEFEAFQEKVQINSRKAQTLYNVVDRAIQSAEELNTKIKNAIYNVHILMEQISGTGGEGNRVPSGDFSRELAEAKSMMEELRSRNFGKQLREAEAEKTEAQLLLNRIRSWLEKHQVENNGLVKNIQDALNEYEAKLSDLRTTMQEASAQAKRAAGLNRDNERALESITKQVKEMKSLQSDFTKHLTTAEASLMQTNTVLQLMRKIHEEYKKTAATLNEARQELSDKVRELSKSSSKEPLVEEAEKHSQSLQALAKQLEEIKRNTSGDELVRCAVDAATAYENILNAITAAEDAADKAARASESALQTVIKEDLPRKAKTLSSGSHKLLNEAKRTQTKLQQEISPALSNLQQTLKIMTVQKGMINTNLTTIRNDLRGIQRDDISGIISSAKTLVRNANDITNEVLDGLSPIQTDVERIKDTYGSTQREDFNQALTDADNSVRKLTNKLPDVLSKIESINQQLLPLGNISDNVDRIRELIQQARDAANKVAIPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPESAEHGSTENMFVMYLGNKDASRDYIGMAVVDGQLMCVYNLGEQEAELQVDQTLTKSETQEAVMDRVKFQRIYQFARLNYTQKATSSKPEAPQLHDVDSKSSNTLLNLDPENVVFYVGGYPSDFRLPSRLRFPPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRKDESDKNYFEGTGYARIPTQSNAANPFFTQIIQTTVDSGLLFFAENQDCFMSLNIEGGRLMVRYKVDSGPPKEKEIGAIVNDGKDHLISVRISRLQKRMRIRMDSLSSIEGDAFDFSTYYLGGIPISIRERFNISTPAFRGCMKNLRKTSGVVRLNDTVGVTKRCSEDWKLVRSASFSRGGQLSFTNLDWPSPSHFQASFGFQTFQPSGILLNHQTRSSSLQVTLEDGHIELSTRDSSGPILTSPQTYMDGLLHYVSVISDNSGLRLLIDDQPLKNNQKLRDFSDSQQSLRLGGSQFEGCISNVFVRRLMESPKVLDLASKSTKRDVSLGGCSLNKPPFLMLLKGSTKFNKAKTFDIHQPLRDTAAASSRSLKVWGDAQSCPPSPGAKASHGALRFGDSPTSHLLFILPQELPKPRSQFAVDVQTTSSRGLVFYTGTKTSFMALYLSKGRLVFALGAEGKKLKLKSKERCNDGKWHTVVFGHDGERGRLVMDGLRAREGSLPGNSTISLRAPVYLGASPSGKSKSLPQNSFVGCLRNFQLDLKPLETPSASLGVSPCLGGSLEKGIYFSQEGGHVILANSVFLGPEFKLVFSIRPRSLTGILIHIGSQPGEHLCVYLEAGKVTASVSSEAGGILTSVTPKQSLCDGQWHSVAVTIKQHIVHLELDSEHSYTAGRHPFSPARTKEHLHIGDVPDNLKTLKLPVWKSFFGCLKNIQVNHVPIPVTEATQVQGTVSLNGCPDH", "length": 1730, "header": "tr|A0A480RXN2-1|F1SBB3_PIG Computationally mapped isoform of Laminin subunit alpha-3 OS=Sus scrofa OX=9823 GN=LAMA3 PE=4 SV=1 CANONICAL=F1SBB3-1" }, "locus": { "chromosome": "6", "start_pos": 108805365, "end_pos": 108728339, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088654.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088654.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073148.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073148.2" } ] } }, { "isoform_ac": "A0A8W4FB96-1", "url": "https://www.uniprot.org/uniprotkb/F1SBB3/entry#A0A8W4FB96-1", "sequence": { "sequence": "MRQEDSAGGMAAAAQARGWASRSGLPLLLRLLLLLLPPAVCPAARGPPTPAQLSLHPPYFNLAEAARIWATATCGEREPDGARPRPELYCKLVGGPTAPGSGQTIQGQFCDYCNSEDPRKAHPVTNAIDGSERWWQSPPLSSGTQYNQVNVTLDLGQLFHVAYVLIKFANSPRPDLWVLERSVDFGSTYSPWQYFAHSKVDCLEQFGRKANMAITRDDDVLCTTEYSRIVPLENGEVVVSLINGRPGAKNFTFSHTLREFTKATNIRLRFLRTNTLLGHLISKAQRDPTVTRRYYYSIKDISIGGRCVCNGHADVCNANNPEKLFRCECQHHTCGETCDRCCAGYNQRRWRPATWEESSACEACNCHGHAIDCYYDPDVERQQASLNIQGIYAGGGVCINCQHNTAGVNCEKCAKGYYRPYGVPVHAPDGCIPCRCNPEHAEACEQGSGRCTCKFNFRGDHCEECAAGYYHFPFCLRIPIFPASTPSPKGPVAGDLKGCDCNLEGVLPEICDAQGRCLCRPGVGGPRCDACRPGFYSFPICQACQCSALGSYQMPCSPVTGQCECQPGITGQRCDRCLSGASDFPHCQGFSGACDPAGTLDSSLGFCQCKLHVESPTCSICKPLYWNLAKENPDGCSECRCHVAGTVSGIGECGQLDGDCHCKSHVGGDSCDTCEDGYFALEKSNYFGCQGCQCDIGGAVTPMCSGPSGVCQCREHVVGKVCQRPENNYYFPDLHHMKYEIEDGTAPDGRALRFGFDPLEFPGFSWRGYAQMTTLQNEVRIVMNVGKSSLSLFRVVLRYINPGTEAVSGRVTIYPSWAKAGVAQSKEIIFQPSKEPAFVTVPGNGFADPFSIVPGTWIACIKAEGVLLDYLVLLPRDYYEAPLLQLPVSEPCADTGPPQENCLLYQHLPVTRFPCALACEASHFLLDGEPRPLAVRQPTPGHPVMADLSGREVELRLRLRVPRVGHYVVMLEYATEADQLSEVTVHVQSPGAMLAGWADIYSCKYSILCRSAVTDGRSGLAVYELLADADIRLKAWTARFLLHQICIIPIEEFSTEYLRPQVKCIASYGQFVNQSAACISLVPETPLTALILDVPHGGPFPLLPQDPSPSTAAVTGIILKAPQDQVTLRGLVPHPGRYVIVIHFYQPAHPTFLAQVSVDGGQLQPGVFRASFCPHVLGCQDHMMVGNQVEFDISEPEVAVTVKVPEGRSLVLVRVLVVPVENYDYQILHRKSVDKSFEFITSCGGDSFYIDPQKASGFCKNSARSLVALYHEGALPCECHPAGAVGRHCSPEGGQCPCRPHVIGRQCTRCQMGYYGFPHCKPCSCGQRLCEETTGTCLCPPRTVRPQCDMCETHSFSFHPLAGCEGCNCSRMGTDGSASPECDRDHGQCRCKLRISGRQCDRCAPGFYRFPECLPCRCNRDGTEPGICDPETGACLCKEMQGGSHGHTFPSLASVLQFVDMMGWRLETADGVDIPVSFNPGSSSVVADLQELPSTVHSASWVAPPSYLGDKVSSYGGYLTYQIKSFGLPGDMVLLEKKPDVQLTGQHMSVIYDEPNPPRPDRLHHARVQVVEANFRHASSRAPVSREELMIVLSRLEGVRLRGLYFTETQRLTLSGVGLEEASDTGSGRHAHNVEMCACPPDYTGDSCQGCSPGYYRDNKGFYTGRCVPCNCHGHSNRCKDGSGICINCQHNTAGEHCERCKEGYYGNAIHGSCQACLCPHSNSFATGCIVTGGNMRCLCKPGYTGTLCERCAPGYFGNPQKFGGSCQPCNCNSNGQLVSCDPLTGDCMNQEPKDSGPGEECDDCDSCVMTLLNDLATMDDELRLVKSQLQGLSVSSRTLEQMRHLETQTKDLRNQLLNYRSTISSQESKMDGLEEELSNLNLEFEAFQEKVQINSRKAQTLYNVVDRAIQSAEELNTKIKNAIYNVHILMEQISGTGGEGNRVPSGDFSRELAEAKSMMEELRSRNFGKQLREAEAEKTEAQLLLNRIRSWLEKHQVENNGLVKNIQDALNEYEAKLSDLRTTMQEASAQAKRAAGLNRDNERALESITKQVKEMKSLQSDFTKHLTTAEASLMQTNTVLQLMRKIHEEYKKTAATLNEARQELSDKVRELSKSSSKEPLVEEAEKHSQSLQALAKQLEEIKRNTSGDELVRCAVDAATAYENILNAITAAEDAADKAARASESALQTVIKEDLPRKAKTLSSGSHKLLNEAKRTQTKLQQEISPALSNLQQTLKIMTVQKGMINTNLTTIRNDLRGIQRDDISGIISSAKTLVRNANDITNEVLDGLSPIQTDVERIKDTYGSTQREDFNQALTDADNSVRKLTNKLPDVLSKIESINQQLLPLGNISDNVDRIRELIQQARDAANKVAIPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPESAEHGSTENMFVMYLGNKDASRDYIGMAVVDGQLMCVYNLGEQEAELQVDQTLTKSETQEAVMDRVKFQRIYQFARLNYTQKATSSKPEAPQLHDVDSKSSNTLLNLDPENVVFYVGGYPSDFRLPSRLRFPPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRKDESDKNYFEGTGYARIPTQSNAANPFFTQIIQTTVDSGLLFFAENQDCFMSLNIEGGRLMVRYKVDSGPPKEKEIGAIVNDGKDHLISVRISRLQKRMRIRMDSLSSIEGDAFDFSTYYLGGIPISIRERFNISTPAFRGCMKNLRKTSGVVRLNDTVGVTKRCSEDWKLVRSASFSRGGQLSFTNLDWPSPSHFQASFGFQTFQPSGILLNHQTRSSSLQVTLEDGHIELSTRDSSGPILTSPQTYMDGLLHYVSVISDNSGLRLLIDDQPLKNNQKLRDFSDSQQSLRLGGSQFEGCISNVFVRRLMESPKVLDLASKSTKRDVSLGGCSLNKPPFLMLLKGSTKFNKAKTFDIHQPLRDTAAASSRSLKVWGDAQSCPPSPGAKASHGALRFGDSPTSHLLFILPQELPKPRSQFAVDVQTTSSRGLVFYTGTKTSFMALYLSKGRLVFALGAEGKKLKLKSKERCNDGKWHTVVFGHDGERGRLVMDGLRAREGSLPGNSTISLRAPVYLGASPSGKSKSLPQNSFVGCLRNFQLDLKPLETPSASLGVSPCLGGSLEKGIYFSQEGGHVILANSVFLGPEFKLVFSIRPRSLTGILIHIGSQPGEHLCVYLEAGKVTASVSSEAGGILTSVTPKQSLCDGQWHSVAVTIKQHIVHLELDSEHSYTAGRHPFSPARTKEHLHIGDVPDNLKTLKLPVWKSFFGCLKNIQVNHVPIPVTEATQVQGTVSLNGCPDH", "length": 3317, "header": "tr|A0A8W4FB96-1|F1SBB3_PIG Computationally mapped isoform of Laminin subunit alpha-3 OS=Sus scrofa OX=9823 GN=LAMA3 PE=4 SV=1 CANONICAL=F1SBB3-1" }, "locus": { "chromosome": "6", "start_pos": 108805365, "end_pos": 108548914, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100889.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100889.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076542.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076542.1" } ] } }, { "isoform_ac": "F1SBB3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBB3/entry#F1SBB3-1", "sequence": { "sequence": "MRQEDSAGGMAAAAQARGWASRSGLPLLLRLLLLLLPPAVCPAARGPPTPAQLSLHPPYFNLAEAARIWATATCGEREPDGARPRPELYCKLVGGPTAPGSGQTIQGQFCDYCNSEDPRKAHPVTNAIDGSERWWQSPPLSSGTQYNQVNVTLDLGQLFHVAYVLIKFANSPRPDLWVLERSVDFGSTYSPWQYFAHSKVDCLEQFGRKANMAITRDDDVLCTTEYSRIVPLENGEVVVSLINGRPGAKNFTFSHTLREFTKATNIRLRFLRTNTLLGHLISKAQRDPTVTRRYYYSIKDISIGGRCVCNGHADVCNANNPEKLFRCECQHHTCGETCDRCCAGYNQRRWRPATWEESSACEACNCHGHAIDCYYDPDVERQQASLNIQGIYAGGGVCINCQHNTAGVNCEKCAKGYYRPYGVPVHAPDGCIPCRCNPEHAEACEQGSGRCTCKFNFRGDHCEECAAGYYHFPFCLRIPIFPASTPSPKGPVAGDLKGCDCNLEGVLPEICDAQGRCLCRPGVGGPRCDACRPGFYSFPICQACQCSALGSYQMPCSPVTGQCECQPGITGQRCDRCLSGASDFPHCQGFSGACDPAGTLDSSLGFCQCKLHVESPTCSICKPLYWNLAKENPDGCSECRCHVAGTVSGIGECGQLDGDCHCKSHVGGDSCDTCEDGYFALEKSNYFGCQGCQCDIGGAVTPMCSGPSGVCQCREHVVGKVCQRPENNYYFPDLHHMKYEIEDGTAPDGRALRFGFDPLEFPGFSWRGYAQMTTLQNEVRIVMNVGKSSLSLFRVVLRYINPGTEAVSGRVTIYPSWAKAGVAQSKEIIFQPSKEPAFVTVPGNGFADPFSIVPGTWIACIKAEGVLLDYLVLLPRDYYEAPLLQLPVSEPCADTGPPQENCLLYQHLPVTRFPCALACEASHFLLDGEPRPLAVRQPTPGHPVMADLSGREVELRLRLRVPRVGHYVVMLEYATEADQLSEVTVHVQSPGAMLAGWADIYSCKYSILCRSAVTDGRSGLAVYELLADADIRLKAWTARFLLHQICIIPIEEFSTEYLRPQVKCIASYGQFVNQSAACISLVPETPLTALILDVPHGGPFPLLPQDPSPSTAAVTGIILKAPQDQVTLRGLVPHPGRYVIVIHFYQPAHPTFLAQVSVDGGQLQPGVFRASFCPHVLGCQDHMMVGNQVEFDISEPEVAVTVKVPEGRSLVLVRVLVVPVENYDYQILHRKSVDKSFEFITSCGGDSFYIDPQKASGFCKNSARSLVALYHEGALPCECHPAGAVGRHCSPEGGQCPCRPHVIGRQCTRCQMGYYGFPHCKPCSCGQRLCEETTGTCLCPPRTVRPQCDMCETHSFSFHPLAGCEGCNCSRMGTDGSASPECDRDHGQCRCKLRISGRQCDRCAPGFYRFPECLPCRCNRDGTEPGICDPETGACLCKENVEGTECDACREGSFDLDPANPKGCTRCFCFGVSHHCHSTQKRRAKFVDMMGWRLETADGVDIPVSFNPGSSSVVADLQELPSTVHSASWVAPPSYLGDKVSSYGGYLTYQIKSFGLPGDMVLLEKKPDVQLTGQHMSVIYDEPNPPRPDRLHHARVQVVEANFRHASSRAPVSREELMIVLSRLEGVRLRGLYFTETQRLTLSGVGLEEASDTGSGRHAHNVEMCACPPDYTGDSCQGCSPGYYRDNKGFYTGRCVPCNCHGHSNRCKDGSGICINCQHNTAGEHCERCKEGYYGNAIHGSCQACLCPHSNSFATGCIVTGGNMRCLCKPGYTGTLCERCAPGYFGNPQKFGGSCQPCNCNSNGQLVSCDPLTGDCMNQEPKDSGPGEECDDCDSCVMTLLNDLATMDDELRLVKSQLQGLSVSSRTLEQMRHLETQTKDLRNQLLNYRSTISSQESKMDGLEEELSNLNLEFEAFQEKVQINSRKAQTLYNVVDRAIQSAEELNTKIKNAIYNVHILMEQISGTGGEGNRVPSGDFSRELAEAKSMMEELRSRNFGKQLREAEAEKTEAQLLLNRIRSWLEKHQVENNGLVKNIQDALNEYEAKLSDLRTTMQEASAQAKRAAGLNRDNERALESITKQVKEMKSLQSDFTKHLTTAEASLMQTNTVLQLMRKIHEEYKKTAATLNEARQELSDKVRELSKSSSKEPLVEEAEKHSQSLQALAKQLEEIKRNTSGDELVRCAVDAATAYENILNAITAAEDAADKAARASESALQTVIKEDLPRKAKTLSSGSHKLLNEAKRTQTKLQQEISPALSNLQQTLKIMTVQKGMINTNLTTIRNDLRGIQRDDISGIISSAKTLVRNANDITNEVLDGLSPIQTDVERIKDTYGSTQREDFNQALTDADNSVRKLTNKLPDVLSKIESINQQLLPLGNISDNVDRIRELIQQARDAANKVAIPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPESAEHGSTENMFVMYLGNKDASRDYIGMAVVDGQLMCVYNLGEQEAELQVDQTLTKSETQEAVMDRVKFQRIYQFARLNYTQKATSSKPEAPQLHDVDSKSSNTLLNLDPENVVFYVGGYPSDFRLPSRLRFPPYKGCIELDDLNENVLSLYNFKKTFNLNTTEVEPCRRRKDESDKNYFEGTGYARIPTQSNAANPFFTQIIQTTVDSGLLFFAENQDCFMSLNIEGGRLMVRYKVDSGPPKEKEIGAIVNDGKDHLISVRISRLQKRMRIRMDSLSSIEGDAFDFSTYYLGGIPISIRERFNISTPAFRGCMKNLRKTSGVVRLNDTVGVTKRCSEDWKLVRSASFSRGGQLSFTNLDWPSPSHFQASFGFQTFQPSGILLNHQTRSSSLQVTLEDGHIELSTRDSSGPILTSPQTYMDGLLHYVSVISDNSGLRLLIDDQPLKNNQKLRDFSDSQQSLRLGGSQFEGCISNVFVRRLMESPKVLDLASKSTKRDVSLGGCSLNKPPFLMLLKGSTKFNKAKTFDIHQPLRDTAAASSRSLKVWGDAQSCPPSPGAKASHGALRFGDSPTSHLLFILPQELPKPRSQFAVDVQTTSSRGLVFYTGTKTSFMALYLSKGRLVFALGAEGKKLKLKSKERCNDGKWHTVVFGHDGERGRLVMDGLRAREGSLPGNSTISLRAPVYLGASPSGKSKSLPQNSFVGCLRNFQLDLKPLETPSASLGVSPCLGGSLEKGIYFSQEGGHVILANSVFLGPEFKLVFSIRPRSLTGILIHIGSQPGEHLCVYLEAGKVTASVSSEAGGILTSVTPKQSLCDGQWHSVAVTIKQHIVHLELDSEHSYTAGRHPFSPARTKEHLHIGDVPDNLKTLKLPVWKSFFGCLKNIQVNHVPIPVTEATQVQGTVSLNGCPDH", "length": 3345, "header": "tr|F1SBB3-1|F1SBB3_PIG Isoform 1 of Laminin subunit alpha-3 OS=Sus scrofa OX=9823 GN=LAMA3 PE=4 SV=3 CANONICAL=F1SBB3-1" }, "locus": { "chromosome": "6", "start_pos": 108805365, "end_pos": 108548914, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004108.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004108.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004016.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004016.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 49, "start_aa": "Thr", "end_pos": 49, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr49", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 939, "start_aa": "Thr", "end_pos": 939, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr939", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 97, "start_aa": "Thr", "end_pos": 97, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr97", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FB96", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB96" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511642", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511642", "resource": "KEGG Pathway" }, { "id": "R-SSC-1474228", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1474228", "resource": "Reactome", "description": "Degradation of the extracellular matrix" }, { "id": "R-SSC-2022090", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022090", "resource": "Reactome", "description": "Assembly of collagen fibrils and other multimeric structures" }, { "id": "R-SSC-3000157", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000157", "resource": "Reactome", "description": "Laminin interactions" }, { "id": "R-SSC-446107", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446107", "resource": "Reactome", "description": "Type I hemidesmosome assembly" }, { "id": "R-SSC-9913351", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9913351", "resource": "Reactome", "description": "Formation of the dystrophin-glycoprotein complex (DGC)" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor binding", "id": "GO:0005102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005102", "evidence": [ { "database": "UniProtKB", "id": "F1SBB3", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SBB3", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" } ], "pmid": "" }, { "name": "basement membrane", "id": "GO:0005604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005604", "evidence": [ { "database": "UniProtKB", "id": "F1SBB3", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SBB3", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1SBB3", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" } ], "pmid": "" }, { "name": "laminin-5 complex", "id": "GO:0005610", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005610", "evidence": [ { "database": "UniProtKB", "id": "F1SBB3", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1SBB3", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" } ], "pmid": "" }, { "name": "regulation of cell adhesion", "id": "GO:0030155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030155", "evidence": [ { "database": "UniProtKB", "id": "F1SBB3", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" } ], "pmid": "" }, { "name": "regulation of cell migration", "id": "GO:0030334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030334", "evidence": [ { "database": "UniProtKB", "id": "F1SBB3", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" } ], "pmid": "" }, { "name": "regulation of embryonic development", "id": "GO:0045995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045995", "evidence": [ { "database": "UniProtKB", "id": "F1SBB3", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SBB3", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" } ], "pmid": "" }, { "name": "nervous system development", "id": "GO:0007399", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007399", "evidence": [ { "database": "UniProtKB", "id": "F1SBB3", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" } ], "pmid": "" }, { "name": "endodermal cell differentiation", "id": "GO:0035987", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035987", "evidence": [ { "database": "UniProtKB", "id": "F1SBB3", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1073, "end_pos": 1075, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1368, "end_pos": 1370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2173, "end_pos": 2175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2276, "end_pos": 2278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2376, "end_pos": 2378, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2513, "end_pos": 2515, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2595, "end_pos": 2597, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2738, "end_pos": 2740, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2761, "end_pos": 2763, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3109, "end_pos": 3111, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" }, { "id": "PS50027", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50027" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Laminin EGF-like", "eco_id": "ECO_0000259", "start_pos": 434, "end_pos": 477, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SBB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" }, { "id": "PS50025", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50025" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Laminin G", "eco_id": "ECO_0000259", "start_pos": 2401, "end_pos": 2602, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SBB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" }, { "id": "PS51115", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51115" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Laminin IV type A", "eco_id": "ECO_0000259", "start_pos": 1487, "end_pos": 1664, "start_aa": "Val", "end_aa": "Met", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SBB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBB3" }, { "id": "PS51117", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51117" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Laminin N-terminal", "eco_id": "ECO_0000259", "start_pos": 51, "end_pos": 306, "start_aa": "Ala", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 49, 97, 939 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1073, "end_pos": 1075 }, { "start_pos": 1368, "end_pos": 1370 }, { "start_pos": 150, "end_pos": 152 }, { "start_pos": 2173, "end_pos": 2175 }, { "start_pos": 2276, "end_pos": 2278 }, { "start_pos": 2376, "end_pos": 2378 }, { "start_pos": 250, "end_pos": 252 }, { "start_pos": 2513, "end_pos": 2515 }, { "start_pos": 2595, "end_pos": 2597 }, { "start_pos": 2738, "end_pos": 2740 }, { "start_pos": 2761, "end_pos": 2763 }, { "start_pos": 3109, "end_pos": 3111 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SDN3-1", "uniprot_ac": "F1SDN3", "uniprot_id": "F1SDN3_PIG", "mass": { "chemical_mass": 84482.0, "monoisotopic_mass": 84482.0 }, "refseq": {}, "gene_names": [ { "name": "DRC1", "type": "recommended", "evidence": [ { "id": "F1SDN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDN3" } ] } ], "protein_names": [ { "name": "Dynein regulatory complex protein 1", "type": "recommended", "evidence": [ { "id": "F1SDN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDN3/entry#names_and_taxonomy" } ] }, { "name": "Coiled-coil domain-containing protein 164", "type": "synonym", "evidence": [ { "id": "F1SDN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDN3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the nexin-dynein regulatory complex (N-DRC) a key regulator of ciliary/flagellar motility which maintains the alignment and integrity of the distal axoneme and regulates microtubule sliding in motile axonemes. Plays a critical role in the assembly of N-DRC and also stabilizes the assembly of multiple inner dynein arms and radial spokes. Coassembles with DRC2 to form a central scaffold needed for assembly of the N-DRC and its attachment to the outer doublet microtubules.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FBP8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBP8#function" }, { "database": "UniProtKB", "id": "ARBA00094477", "url": "https://www.uniprot.org/uniprotkb/ARBA00094477#function" }, { "database": "UniProtKB", "id": "A0A8W4FCZ7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCZ7#function" }, { "database": "UniProtKB", "id": "F1SDN3", "url": "https://www.uniprot.org/uniprotkb/F1SDN3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDN3", "url": "https://www.uniprot.org/uniprotkb/F1SDN3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DRC1", "url": "https://www.uniprot.org/uniprotkb/F1SDN3", "locus": { "chromosome": "3", "start_pos": 112581779, "end_pos": 112621623, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008568", "url": "https://www.ensembl.org/id/ENSSSCG00000008568" } ] } } ], "crossref": [ { "id": "F1SDN3", "url": "https://alphafold.ebi.ac.uk/entry/F1SDN3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008568", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008568", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029440", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029440", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039505", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039505", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039750", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039750", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21625", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21625", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21625:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21625:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14772", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14772", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14775", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14775", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FBP8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBP8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCZ7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGC0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGC0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHH3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHH3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDN3", "url": "https://www.uniprot.org/uniprotkb/F1SDN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDN3-1", "url": "https://www.uniprot.org/uniprotkb/F1SDN3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNPPASLGVLEEKKEEEHLSTPILGPSIHSDNPQERIQARRLRIAARLEARRREALGEYLDGKKEAEEDQSKSYKQKEESRLKLAKLLLCGTELVTNIQVAADIREIHRRVEEEEIKRQRLEKLENEVKTSQDKFDEITVKWEEGKQKRIPQELWEILNTQQVHCAGLIEDKNKLISELQQELKMKDDQYVKDLKKQADDICLLLERMEEQVKNVMKTFRQELHHIEKAFEVERHELLTSNKKKWERALQAHNAKELEYLMSRIKKVEDYEQQLNRQRIWDCEEYNVIKIKLEQDVQVGLEEINLILEQQLQQMKATYQLNQEKLEYNFQVLKKRDEESTVIKSQQKRKINRLHDVLNNLRSKYNKQIKQFQEENQSLTSDYKRLVLQFKEMQKAMRHFALIDDKQFREIWLMNEEEAKELISRALDVDRIIHTHHLGLPWTAPDFWFLKNVGPISQQQHKSATQILEEVLMRAEEEGAEEAASETESYLELPKQVSAKTTRRILMLLCDETGFLIESKLLSLLLPLEKNECYLLRLDALFSDDLYKLVHFFLKYQAHHSPPIQEQTSLVSALEPEELLDHGGGEGSLKEPPRSPVLIHPNDVLKILEAFVMGLRKPRDFRAPAKLLKGVRDASEDSEYWRALTTVIPAATLSLWDVLYTALEKYHLVLTQRAELLIENRSLEQQNTELQQLLQQYLDSKVNSELQVPPTHVFRMPTK", "length": 718, "header": "tr|F1SDN3-1|F1SDN3_PIG Isoform 1 of Dynein regulatory complex protein 1 OS=Sus scrofa OX=9823 GN=DRC1 PE=3 SV=4 CANONICAL=F1SDN3-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FBP8-1", "url": "https://www.uniprot.org/uniprotkb/F1SDN3/entry#A0A8W4FBP8-1", "sequence": { "sequence": "ILSNISFSSLSLDFQEALGEYLDGKKEAEEDQSKSYKQKEESRLKLAKLLLCGTELVTNIQVAADIREIHRRVEEEEIKRQRLEKLENEVKTSQDKFDEITVKWEEGKQKRIPQELWEILNTQQVHCAGLIEDKNKLISELQQELKMKDDQYVKDLKKQADDICLLLERMEEQVKNVMKTFRQELHHIEKAFEVERHELLTSNKKKWERALQAHNAKELEYLMSRIKKVEDYEQQLNRQRIWDCEEYNVIKIKLEQDVQILEQQLQQMKATYQLNQEKLEYNFQVLKKRDEESTVIKSQQKRKINRLHDVLNNLRSKYNKQIKQFQEENQSLTSDYKRLVLQFKEMQKAMRHFALIDDKQFREIWLMNEEEAKELISRALDVDRIIHTHHLGLPWTAPDFWFLKNVGPISQQQHKSATQILEEVLMRAEEEGAEEAASETESYLELPKQVSAKTTRRILMLLCDETGFLIESKLLSLLLPLEKNECYLLRLDALFSDDLYKLVHFFLKYQAHHSPPIQEQTSLVSALEPEELLDHGGGEGSLKEPPRSPVLIHPNDVLKILEAFVMGLRKPRDFRAPAKLLKGVRDASEDSEYWRALTTVIPAATLSLWDVLYTALEKYHLVLTQRAELLIENRSLEQQNTELQQLLQQYLDSKVNSELQVPPTHVFRMPTK", "length": 672, "header": "tr|A0A8W4FBP8-1|F1SDN3_PIG Computationally mapped isoform of Dynein regulatory complex protein 1 OS=Sus scrofa OX=9823 GN=DRC1 PE=3 SV=1 CANONICAL=F1SDN3-1" }, "locus": { "chromosome": "3", "start_pos": 112612228, "end_pos": 112581963, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106251.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106251.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076278.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076278.1" } ] } }, { "isoform_ac": "A0A8W4FCZ7-1", "url": "https://www.uniprot.org/uniprotkb/F1SDN3/entry#A0A8W4FCZ7-1", "sequence": { "sequence": "ILSNISFSSLSLDFQEALGEYLDGKKEAEEDQSKSYKQKEESRLKLAKLLLCGTELVTNIQVAADIREIHRRVEEEEIKRQRLEKLENEVKTSQDKFDEITVKWEEGKQKRIPQELWEILNTQQVHCAGLIEDKNKLISELQQELKMKDDQYVKDLKKQADDICLLLERMEEQVKNVMKTFRQELHHIEKAFEVERHELLTSNKKKWERALQAHNAKELEYLMSRIKKVEDYEQQLNRQRIWDCEEYNVIKIKLEQDVQILEQQLQQMKATYQLNQEKLEYNFQVLKKRDEESTVIKSQQKRKINRLHDVLNNLRSKYNKQIKQFQEENQSLTSDYKRLVLQFKEMQKAMRHFALIDDKQFREIWLMNEEEAKELISRALDVDRIIHTHHLGLPWTAPDFWFLKNVGPISQQQHKSATQILEEVLMRAEEEGAEEAASETESYLELPKQVSAKTTRRILMLLCDETGFLIESKLLSLLLPLEKNECYLLRLDALFSALGIEMRMTCISWCISSSNTKLIIRKPREGEPPEKEPPRSPVLIHPNDVLKILEAFVMGLRKPRDFRAPAKLLKGVRDASEDSEYWRALTTVIPAATLSLWDVLYTALEKYHLVLTQRAELLIENRSLEQQNTELQQLLQQYLDSKVNSELQVPPTHVFRMPTK", "length": 660, "header": "tr|A0A8W4FCZ7-1|F1SDN3_PIG Computationally mapped isoform of Dynein regulatory complex protein 1 OS=Sus scrofa OX=9823 GN=DRC1 PE=3 SV=1 CANONICAL=F1SDN3-1" }, "locus": { "chromosome": "3", "start_pos": 112612228, "end_pos": 112581963, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093447.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093447.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077139.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077139.1" } ] } }, { "isoform_ac": "A0A8W4FGC0-1", "url": "https://www.uniprot.org/uniprotkb/F1SDN3/entry#A0A8W4FGC0-1", "sequence": { "sequence": "MNPPASLGVLEEKKEEEHLSTPILGPSIHSDNPQERIQARRLRIAARLEARRREALGEYLDGKKEAEEDQSKSYKQKEESRLKLAKLLLCGTELVTNIQVAADIREIHRRVEEEEIKRQRLEKLENEVKTSQDKFDEITVKWEEGKQKRIPQELWEILNTQQVHCAGLIEDKNKLISELQQELKMKDDQYVKDLKKQADDICLLLERMEEQVKNVMKTFRQELHHIEKAFEVERHELLTSNKKKWERALQAHNAKELEYLMSRIKKVEDYEQQLNRQRIWDCEEYNVIKIKLEQDVQILEQQLQQMKATYQLNQEKLEYNFQVLKKRDEESTVIKSQQKRKINRLHDVLNNLRSKYNKQIKQFQEENQSLTSDYKRLVLQFKEMQKAMRHFALIDDKQFREIWLMNEEEAKELISRALDVDRIIHTHHLGLPWTAPDFWFLKNVGPISQQQHKSATQILEEVLMRAEEEGAEEAASETESYLELPKQVSAKTTRRILMLLCDETGFLIESKLLSLLLPLEKNECYLLRLDALFSVSSPPPAPAPPRGWGPWPEAAPCASSIASPRGGKPREGEPPEKEPPRSPVLIHPNDVLKILEAFVMGLRKPRDFRAPAKLLKGVRDASEDSEYWRALTTVIPAATLSLWDVLYTALEKYQ", "length": 654, "header": "tr|A0A8W4FGC0-1|F1SDN3_PIG Computationally mapped isoform of Dynein regulatory complex protein 1 OS=Sus scrofa OX=9823 GN=DRC1 PE=3 SV=1 CANONICAL=F1SDN3-1" }, "locus": { "chromosome": "3", "start_pos": 112621581, "end_pos": 112584019, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097584.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097584.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078285.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078285.1" } ] } }, { "isoform_ac": "A0A8W4FHH3-1", "url": "https://www.uniprot.org/uniprotkb/F1SDN3/entry#A0A8W4FHH3-1", "sequence": { "sequence": "MNPPASLGVLEEKKEEEHLSTPILGPSIHSDNPQERIQARRLRIAARLEARRREALGEYLDGKKEAEEDQSKSYKQKEESRLKLAKLLLCGTELVTNIQVAADIREIHRRVEEEEIKRQRLEKLENEVKTSQDKFDEITVKWEEGKQKRIPQELWEILNTQQVHCAGLIEDKNKLISELQQELKMKDDQYVKDLKKQADDICLLLERMEEQVKNVMKTFRQELHHIEKAFEVERHELLTSNKKKWERALQAHNAKELEYLMSRIKKVEDYEQQLNRQRIWDCEEYNVIKIKLEQDVQILEQQLQQMKATYQLNQEKLEYNFQVLKKRDEESTVIKSQQKRKINRLHDVLNNLRSKYNKQIKQFQEENQSLTSDYKRLVLQFKEMQKAMRHFALIDDKQFREIWLMNEEEAKELISRALDVDRIIHTHHLGLPWTAPDFWFLKNVGPISQQQHKSATQILEEVLMRAEEEGAEEAASETESYLELPKQVSAKTTRRILMLLCDETVRLGSQVALPTCCLYFWWVTSGWAGCGLEAGDDLYKLVHFFLKYQAHHSGGKPRGGKPREGEPPEKEPPRSPVLIHPNDVLKILEAFVMGLRKPRDFRAPAKLLKGVRDASEDSEYWRALTTVIPAATLSLWDVLYTALEKYQ", "length": 647, "header": "tr|A0A8W4FHH3-1|F1SDN3_PIG Computationally mapped isoform of Dynein regulatory complex protein 1 OS=Sus scrofa OX=9823 GN=DRC1 PE=3 SV=1 CANONICAL=F1SDN3-1" }, "locus": { "chromosome": "3", "start_pos": 112621581, "end_pos": 112584019, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101248.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101248.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078774.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078774.1" } ] } }, { "isoform_ac": "F1SDN3-1", "url": "https://www.uniprot.org/uniprotkb/F1SDN3/entry#F1SDN3-1", "sequence": { "sequence": "MNPPASLGVLEEKKEEEHLSTPILGPSIHSDNPQERIQARRLRIAARLEARRREALGEYLDGKKEAEEDQSKSYKQKEESRLKLAKLLLCGTELVTNIQVAADIREIHRRVEEEEIKRQRLEKLENEVKTSQDKFDEITVKWEEGKQKRIPQELWEILNTQQVHCAGLIEDKNKLISELQQELKMKDDQYVKDLKKQADDICLLLERMEEQVKNVMKTFRQELHHIEKAFEVERHELLTSNKKKWERALQAHNAKELEYLMSRIKKVEDYEQQLNRQRIWDCEEYNVIKIKLEQDVQVGLEEINLILEQQLQQMKATYQLNQEKLEYNFQVLKKRDEESTVIKSQQKRKINRLHDVLNNLRSKYNKQIKQFQEENQSLTSDYKRLVLQFKEMQKAMRHFALIDDKQFREIWLMNEEEAKELISRALDVDRIIHTHHLGLPWTAPDFWFLKNVGPISQQQHKSATQILEEVLMRAEEEGAEEAASETESYLELPKQVSAKTTRRILMLLCDETGFLIESKLLSLLLPLEKNECYLLRLDALFSDDLYKLVHFFLKYQAHHSPPIQEQTSLVSALEPEELLDHGGGEGSLKEPPRSPVLIHPNDVLKILEAFVMGLRKPRDFRAPAKLLKGVRDASEDSEYWRALTTVIPAATLSLWDVLYTALEKYHLVLTQRAELLIENRSLEQQNTELQQLLQQYLDSKVNSELQVPPTHVFRMPTK", "length": 718, "header": "tr|F1SDN3-1|F1SDN3_PIG Isoform 1 of Dynein regulatory complex protein 1 OS=Sus scrofa OX=9823 GN=DRC1 PE=3 SV=4 CANONICAL=F1SDN3-1" }, "locus": { "chromosome": "3", "start_pos": 112621581, "end_pos": 112581963, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009374.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009374.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009134.5", "url": "https://www.ensembl.org/id/ENSSSCP00000009134.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FBP8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBP8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "axonemal dynein complex", "id": "GO:0005858", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005858", "evidence": [ { "database": "UniProtKB", "id": "F1SDN3", "url": "https://www.uniprot.org/uniprotkb/F1SDN3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SDN3", "url": "https://www.uniprot.org/uniprotkb/F1SDN3" } ], "pmid": "" }, { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "F1SDN3", "url": "https://www.uniprot.org/uniprotkb/F1SDN3" } ], "pmid": "" }, { "name": "axoneme", "id": "GO:0005930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005930", "evidence": [ { "database": "UniProtKB", "id": "F1SDN3", "url": "https://www.uniprot.org/uniprotkb/F1SDN3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "axonemal dynein complex assembly", "id": "GO:0070286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070286", "evidence": [ { "database": "UniProtKB", "id": "F1SDN3", "url": "https://www.uniprot.org/uniprotkb/F1SDN3" } ], "pmid": "" }, { "name": "cilium-dependent cell motility", "id": "GO:0060285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060285", "evidence": [ { "database": "UniProtKB", "id": "F1SDN3", "url": "https://www.uniprot.org/uniprotkb/F1SDN3" } ], "pmid": "" }, { "name": "regulation of cilium movement", "id": "GO:0003352", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003352", "evidence": [ { "database": "UniProtKB", "id": "F1SDN3", "url": "https://www.uniprot.org/uniprotkb/F1SDN3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 375, "end_pos": 377, "annotation": "n_glycosylation_sequon" }, { "start_pos": 679, "end_pos": 681, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDN3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 718, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDN3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDN3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDN3" }, { "id": "PF14775", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14775" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Dynein regulatory complex protein 1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 638, "end_pos": 697, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SDN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDN3" }, { "id": "PF14772", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14772" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Dynein regulatory complex protein 1/2 N-terminal", "eco_id": "ECO_0000259", "start_pos": 100, "end_pos": 201, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 375, "end_pos": 377 }, { "start_pos": 679, "end_pos": 681 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SAB2-1", "uniprot_ac": "F1SAB2", "uniprot_id": "F1SAB2_PIG", "mass": { "chemical_mass": 86112.0, "monoisotopic_mass": 86112.0 }, "refseq": { "ac": "XP_020942131", "name": "conserved oligomeric Golgi complex subunit 7 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942131" }, "gene_names": [ { "name": "COG7", "type": "recommended", "evidence": [ { "id": "F1SAB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB2" } ] }, { "name": "COG7", "type": "synonym", "evidence": [ { "id": "XP_020942131", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942131" } ] } ], "protein_names": [ { "name": "Conserved oligomeric Golgi complex subunit 7", "type": "recommended", "evidence": [ { "id": "F1SAB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB2/entry#names_and_taxonomy" } ] }, { "name": "Component of oligomeric Golgi complex 7", "type": "synonym", "evidence": [ { "id": "F1SAB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB2/entry#names_and_taxonomy" } ] }, { "name": "conserved oligomeric Golgi complex subunit 7 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020942131", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942131" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAB2", "url": "https://www.uniprot.org/uniprotkb/F1SAB2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COG7", "url": "https://www.uniprot.org/uniprotkb/F1SAB2", "locus": { "chromosome": "3", "start_pos": 22826585, "end_pos": 22740436, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010799", "url": "https://www.ensembl.org/id/ENSSSCG00000010799" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010799", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010799", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100627695", "url": "https://www.ncbi.nlm.nih.gov/gene/100627695", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019335", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019335", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627695", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627695", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LKYYHNC", "url": "https://omabrowser.org/oma/group/LKYYHNC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAB2", "url": "https://www.orthodb.org/?gene=F1SAB2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21443", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21443", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21443:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21443:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10191", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10191", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6807878", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6811438", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811438", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020942131", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942131", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480MGV8", "url": "https://www.uniprot.org/uniprotkb/A0A480MGV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480MGV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480MGV8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481AZP4", "url": "https://www.uniprot.org/uniprotkb/A0A481AZP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481AZP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A481AZP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FC43", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FC43-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC43-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD41", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD41-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD41-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FQE5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FQE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQE5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAB2", "url": "https://www.uniprot.org/uniprotkb/F1SAB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAB2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAB2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDFSKFLAEDFDVKEWINAAFRAGPKEAAAGKADSHAATLVMKLQLFIQEVNHAVEETSHQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDVTVISAKLTGMQNSLTMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQSIDQSKVFVKVFTEIDRMPQLLAYYYKCHKVQLLAAWQELCQTDLPLERQLTGLYDALLGAWHTQIQWASQVFRNPHEVVTVLLIQTLGALVPSLPICLSSGVERAGPELELVKLLEFYGATAHFAKGLEMALLPHPQEHNLVKVTELVDAVYGPYKPYQLKYGDMEEKNLLIQISAVPLEHGEVIDCVQELSHSVNKLFGLASAAVDRCIKFTNGLGTCGLLAALKSLFAKYVSDFTSTLHSIRKKCKLDDIPTNSLFQEDWTAFQNSIRIIATCGELLRQCGDFEQQLANRILSTAGKYLSDSYSPRSLTGFQDSILTDKKSSAKNPWQEYNYLQKDSPAEYGSLMEILYTLKEKGSSNHNLLSASRAALTRLNQQAHQLAFDSVFLRIKQQLLLISKMDSWNTAGIGETLTDDLPTFSLTPLEYISNIGQYIMSLPLNLEPFVTQEDSALELALHAGKLPFPPEQGDELPELDNMADNWLGSIARATMQTYCDAILQIPELTPHSTKQLATDIDYLINVMDALGLQPSRNLQGIVMLLKTKPEDYRQVSKSLPRRLAATVAAMRGVDY", "length": 770, "header": "tr|F1SAB2-1|F1SAB2_PIG Isoform 1 of Conserved oligomeric Golgi complex subunit 7 OS=Sus scrofa OX=9823 GN=COG7 PE=3 SV=3 CANONICAL=F1SAB2-1" }, "isoforms": [ { "isoform_ac": "A0A480MGV8-1", "url": "https://www.uniprot.org/uniprotkb/F1SAB2/entry#A0A480MGV8-1", "sequence": { "sequence": "MDFSKFLAEDFDVKEWINAAFRAGPKEAAAGKADSHAATLVMKLQLFIQEVNHAVEETSHQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDVTVISAKLTGMQNSLTMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQSIDQSKVFVKVFTEIDRMPQLLAYYYKCHKVQLLAAWQELCQTDLPLERQLTGLYDALLGAWHTQIQWASQVFRNPHEVVTVLLIQTLGALVPSLPICLSSGVERAGPELELVKLLEFYGATAHFAKGLEMALLPHPQEHNLVKVTELVDAVYGPYKPYQLKYGDMEEKNLLIQISAVPLEHGEVIDCVQELSHSVNKLFGLASAAVDRCIKFTNGLGTCGLLAALKSLFAKYVSDFTSTLHSIRKKCKLDDIPTNSLFQEDWTAFQNSIRIIATCGELLRQCGDFEQQLANRILSTAGKYLSDSYSPRSLTGFQDSILTDKKSSAKNPWQEYNYLQKDSPAEYGSLMEILYTLKEKGSSNHNLLSASRAALTRLNQQAHQLAFDSVFLRIKQQLLLISKMDSWNTAGIGETLTDDLPTFSLTPLEYISNVSASGHLAPGWSQHRDLSFALSFSSGPAG", "length": 658, "header": "tr|A0A480MGV8-1|F1SAB2_PIG Computationally mapped isoform of Conserved oligomeric Golgi complex subunit 7 OS=Sus scrofa OX=9823 GN=COG7 PE=3 SV=1 CANONICAL=F1SAB2-1" }, "locus": { "chromosome": "3", "start_pos": 22805493, "end_pos": 22740634, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091738.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091738.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075887.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075887.1" } ] } }, { "isoform_ac": "A0A481AZP4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAB2/entry#A0A481AZP4-1", "sequence": { "sequence": "MDFSKFLAEDFDVKEWINAAFRAGPKEAAAGKADSHAATLVMKLQLFIQEVNHAVEETSHQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDVTVISAKLTGMQNSLTMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQSIDQSKVFVKVFTEIDRMPQLLAYYYKCHKVQLLAAWQELCQTDLPLERQLTGLYDALLGAWHTQIQWASQVFRNPHEVVTVLLIQTLGALVPSLPICLSSGVERAGPELELVKLLEFYGATAHFAKGLEMALLPHPQEHNLVKVTELVDAVYGPYKPYQLKYGDMEEKNLLIQISAVPLEHGEVIDCVQELSHSVNKLFGLASAAVDRCIKFTNGLGTCGLLAALKSLFAKYVSDFTSTLHSIRKKCKLDDIPTNSLFQEDWTAFQNSIRIIATCGELLRQCGDFEQQLANRILSTAGKYLSDSYSPRSLTGFQDSILTDKKSSAKNPWQEYNYLQKDSPAEYGSLMEILYTLKGLPAVPLHLDPPTGCV", "length": 570, "header": "tr|A0A481AZP4-1|F1SAB2_PIG Computationally mapped isoform of Conserved oligomeric Golgi complex subunit 7 OS=Sus scrofa OX=9823 GN=COG7 PE=3 SV=1 CANONICAL=F1SAB2-1" }, "locus": { "chromosome": "3", "start_pos": 22794804, "end_pos": 22740634, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096484.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096484.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077445.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077445.1" } ] } }, { "isoform_ac": "A0A8W4FC43-1", "url": "https://www.uniprot.org/uniprotkb/F1SAB2/entry#A0A8W4FC43-1", "sequence": { "sequence": "MDFSKFLAEDFDVKEWINAAFRAGPKEAAAGKADSHAATLVMKLQLFIQEVNHAVEETSHQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDVTVISAKLTGMQNSLTMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQSIDQSKVFVKVFTEIDRMPQLLAYYYKCHKVQLLAAWQELCQTDLPLERQLTGLYDALLGAWHTQIQWASQVFRNPHEVVTVLLIQTLGALVPSLPICLSSGVERAGPELELVKLLEFYGATAHFAKGLEMALLPHPQEHNLVKVTELVDAVYGPYKPYQLKYGDMEEKNLLIQISAVPLEHGEVIDCVQELSHSVNKLFGLASAAVDRCIKFTNGLGTCGLLAALKSLFAKYVSDFTSTLHSIRKKCKLDDIPTNSLFQEDWTAFQNSIRIIATCGELLRQCGDFEQQLANRILSTAGKYLSDSYSPRSLTGFQDSILTDKKSSAKNPWQEYNYLQKDSPAEYGSLMEILYTLKEKGSSNHNLLSASRAALTRLNQQAHQLAFDSVFLRIKQQLLLISKMDSWNTAGIGETLTDDLPTFSLTPLEYISNGVAQYPGRMELKIWIGQYIMSLPLNLEPFVTQEDSALELALHAGKLPFPPEQGDELPELDNMADNWLGSIARATMQTYCDAILQIPELTPHSTKQLATDIDYLINVMDALGLQPSRNLQGIVMLLKTKPEDYRQVSKSLPRRLAATVAAMRGVDY", "length": 784, "header": "tr|A0A8W4FC43-1|F1SAB2_PIG Computationally mapped isoform of Conserved oligomeric Golgi complex subunit 7 OS=Sus scrofa OX=9823 GN=COG7 PE=3 SV=1 CANONICAL=F1SAB2-1" }, "locus": { "chromosome": "3", "start_pos": 22826336, "end_pos": 22740634, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094961.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094961.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076828.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076828.1" } ] } }, { "isoform_ac": "A0A8W4FD41-1", "url": "https://www.uniprot.org/uniprotkb/F1SAB2/entry#A0A8W4FD41-1", "sequence": { "sequence": "SWHFLVVQQVKDLVLSLHQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDVTVISAKLTGMQNSLTMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQSIDQSKVFVKVFTEIDRMPQLLAYYYKCHKVQLLAAWQELCQTDLPLERQLTGLYDALLGAWHTQIQWASQVFRNPHEVVTVLLIQTLGALVPSLPICLSSGVERAGPELELVKLLEFYGATAHFAKGLEMALLPHPQEHNLVKVTELVDAVYGPYKPYQLKYGDMEEKNLLIQISAVPLEHGEVIDCVQELSHSVNKLFGLASAAVDRCIKFTNGLGTCGLLAALKSLFAKYVSDFTSTLHSIRKKCKLDDIPTNSLFQEDWTAFQNSIRIIATCGELLRQCGDFEQQLANRILSTAGKYLSDSYSPRSLTGFQDSILTDKKSSAKNPWQEYNYLQKDSPAEYGSLMEILYTLKEKGSSNHNLLSASRAALTRLNQQAHQLAFDSVFLRIKQQLLLISKMDSWNTAGIGETLTDDLPTFSLTPLEYINYLINVMDALGLQPSRNLQGIVMLLKTKPEDYRQVSKSLPRRLAATVAAMRGVDY", "length": 640, "header": "tr|A0A8W4FD41-1|F1SAB2_PIG Computationally mapped isoform of Conserved oligomeric Golgi complex subunit 7 OS=Sus scrofa OX=9823 GN=COG7 PE=3 SV=1 CANONICAL=F1SAB2-1" }, "locus": { "chromosome": "3", "start_pos": 22826336, "end_pos": 22744908, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099473.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099473.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077185.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077185.1" } ] } }, { "isoform_ac": "A0A8W4FQE5-1", "url": "https://www.uniprot.org/uniprotkb/F1SAB2/entry#A0A8W4FQE5-1", "sequence": { "sequence": "MDFSKFLAEDFDVKEWINAAFRAGPKEAAAGKADSHAATLVMKLQLFIQEVNHAVEETSHQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDVTVISAKLTGMQNSLTMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQSIDQSKVFVKVFTEIDRMPQLLAYYYKCHKVQLLAAWQELCQTDLPLERQLTGLYDALLGAWHTQIQWASQVFRNPHEVVTVLLIQTLGALVPSLPICLSSGVERAGPELELVKLLEFYGATAHFAKGLEMALLPHPQEHNLVKVTELVDAVYGPYKPYQLKYGDMEEKNLLIQISAVPLEHGEVIDCVQELSHSVNKLFGLASAAVDRCIKFTNGLGTCGLLAALKSLFAKYVSDFTSTLHSIRKKCKLDDIPTNSLFQEDWTAFQNSIRIIATCGELLRQCGDFEQQLANRILSTAGKYLSDSYSPRSLTGFQDSILTDKKSSAKNPWQEYNYLQKDSPAEYGSLMEILYTLKEKGSSNHNLLSASRAALTRLNQQAHQLAFDSVFLRIKQQLLLISKMDSWNTAGIGETLTDDLPTFSLTPLEYISNGTSCLSWTTWLTTGWAPSPGPRCRPTATRSSRSPSSPRTPPSSWPPTSVSSLGTAGSGRLHLSGPLSSRKVVSHLLLTSALVCL", "length": 713, "header": "tr|A0A8W4FQE5-1|F1SAB2_PIG Computationally mapped isoform of Conserved oligomeric Golgi complex subunit 7 OS=Sus scrofa OX=9823 GN=COG7 PE=3 SV=1 CANONICAL=F1SAB2-1" }, "locus": { "chromosome": "3", "start_pos": 22822336, "end_pos": 22740634, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097136.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097136.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081229.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081229.1" } ] } }, { "isoform_ac": "F1SAB2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAB2/entry#F1SAB2-1", "sequence": { "sequence": "MDFSKFLAEDFDVKEWINAAFRAGPKEAAAGKADSHAATLVMKLQLFIQEVNHAVEETSHQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDVTVISAKLTGMQNSLTMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQSIDQSKVFVKVFTEIDRMPQLLAYYYKCHKVQLLAAWQELCQTDLPLERQLTGLYDALLGAWHTQIQWASQVFRNPHEVVTVLLIQTLGALVPSLPICLSSGVERAGPELELVKLLEFYGATAHFAKGLEMALLPHPQEHNLVKVTELVDAVYGPYKPYQLKYGDMEEKNLLIQISAVPLEHGEVIDCVQELSHSVNKLFGLASAAVDRCIKFTNGLGTCGLLAALKSLFAKYVSDFTSTLHSIRKKCKLDDIPTNSLFQEDWTAFQNSIRIIATCGELLRQCGDFEQQLANRILSTAGKYLSDSYSPRSLTGFQDSILTDKKSSAKNPWQEYNYLQKDSPAEYGSLMEILYTLKEKGSSNHNLLSASRAALTRLNQQAHQLAFDSVFLRIKQQLLLISKMDSWNTAGIGETLTDDLPTFSLTPLEYISNIGQYIMSLPLNLEPFVTQEDSALELALHAGKLPFPPEQGDELPELDNMADNWLGSIARATMQTYCDAILQIPELTPHSTKQLATDIDYLINVMDALGLQPSRNLQGIVMLLKTKPEDYRQVSKSLPRRLAATVAAMRGVDY", "length": 770, "header": "tr|F1SAB2-1|F1SAB2_PIG Isoform 1 of Conserved oligomeric Golgi complex subunit 7 OS=Sus scrofa OX=9823 GN=COG7 PE=3 SV=3 CANONICAL=F1SAB2-1" }, "locus": { "chromosome": "3", "start_pos": 22826336, "end_pos": 22740634, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011815.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011815.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011512.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011512.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FC43", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC43" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627695", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627695", "resource": "KEGG Pathway" }, { "id": "R-SSC-6807878", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "resource": "Reactome", "description": "COPI-mediated anterograde transport" }, { "id": "R-SSC-6811438", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811438", "resource": "Reactome", "description": "Intra-Golgi traffic" } ], "orthologs": [ { "uniprot_canonical_ac": "A2VDR8-1", "protein_name": "Conserved oligomeric Golgi complex subunit 7", "gene_name": "COG7", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDFSKFLAEDFDVKEWINAAFRAGPKEAAAGKADSHAATLVMKLQLFIQEVNHAVEETSHQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDIAVISAKLTGMQNSLMMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQSIDQSKMFVKVFSEIDRMPQLLAYYYKCHKVQLLAAWQELCQTDLPLDRQLTGLYDALLGAWHAQIQWASQVFKNPHDVVTVLLIQTLGALVPSLPVCLSSGVERAGPELELVKLLEFYDATAHFAKGLEMALLPHAYEQNLVKVMELVDAVYGPYKPYQLKYGDMEEKYLLIQFSEVPLEHGEVIDCVQELSHSVNKLFGLSSAAVDRCIRFTSGLGTCGLLTALKSLFAKYVSDFTSTLHSIRKKYRLDDIPLNSLFQEDWTAFQNSIRIIATCGELLRQCGDFEQQLANRILSTAGKYLSDSFSPRSLTGFQDSILTDKKSSAKNPWQEYNYLQKDSPAEYGSLMEILYTLKEKGSSNHHLLSASRSALTRLNQQAHQLAFDSVFLRIKQQLLLIPKMDSWNTAGIGETLTDDLPTFSLTPLEYISNIGQYIMSLPLNLEPFVTQEDSALELALHAGKLPFPPEQGDELPELDNMADNWLGSIARATMQTYCDAILQIPELTPHSTKQLATDIDYLINVMDALGLQPSRTLQNIVMLLKAKPEDYRQVSKGLPRRLATTVATMRSVDY", "length": 770 }, "evidence": [ { "id": "F1SAB2", "url": "https://omabrowser.org/oma/group/F1SAB2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BZM5-1", "protein_name": "Conserved oligomeric Golgi complex subunit 7", "gene_name": "COG7", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDISRFMADDFEVKSWVNAAFRAGQQDAPGQADAHASTLVMKLQVFIQEVNNVVEEASQQALHSMPRVLREVEALRQEAAFLREQMVLVKEDIRRFEEDTAQSMQVLVEIDRVKSRMQLAAESLQEADKWTTLSADIEETLKTQDVSAIAAKLTSMQSSLAMLVDTPDYSEKCVHLEALKNRLEAMASPQIVAAFNSQSVDQAKMFVKVFTEIDRMPQLLAYYYKCHKVQLVAVWQDLCQSDLSLNRQLTELYDTLLGTWHSQLQWATQVFKKPHEVVTVLLIQTLGALVPSIPVCLSTAMERTGQETKLSKLLELYDATVHFAKGLEMAMLPNLKEQNLVKVMELVEAVYHPYKPFQLKYGDLEEENLLIQISAVPLEHWEVIDCVQELNHSVSKLFILASGAIDNCIKLTDGLGVCGLLKALKALFAKYTSDFTNTLQSIRMKCKLDDIPSDSLFQEDWTAFQNSVRIITTCGELLRQCGDFEQQLANRILSTAGKYLSDSYSPCSFSGFQDTSATEKKSNVKNPWQEYNYLLKENPSEYASLMETLYTLKEKGTSNHNLLSSSRSALSRLNQLAHHLAFDSVFLRIKQQLLLVSKMESWTSGGVGETLTEDLPNFSLTPLEYISNIGQYIMSLPLHLEPFVTQEDSALELALHAGKLPYPPEQGDELPELDNMADYWLGSIARATMQTYCEVILQIPELTVHSTKQLSTDIDYLINVMDALGLQPSRTLQNIVTLLKAKPEDYRQAAKSVPRRMVSSIAAMRGLEC", "length": 769 }, "evidence": [ { "id": "F1SAB2", "url": "https://omabrowser.org/oma/group/F1SAB2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P83436-1", "protein_name": "Conserved oligomeric Golgi complex subunit 7", "gene_name": "COG7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDFSKFLADDFDVKEWINAAFRAGSKEAASGKADGHAATLVMKLQLFIQEVNHAVEETSHQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDIAVISAKLTGMQNSLMMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQAVDQSKVFVKVFTEIDRMPQLLAYYYKCHKVQLLAAWQELCQSDLSLDRQLTGLYDALLGAWHTQIQWATQVFQKPHEVVMVLLIQTLGALMPSLPSCLSNGVERAGPEQELTRLLEFYDATAHFAKGLEMALLPHLHEHNLVKVTELVDAVYDPYKPYQLKYGDMEESNLLIQMSAVPLEHGEVIDCVQELSHSVNKLFGLASAAVDRCVRFTNGLGTCGLLSALKSLFAKYVSDFTSTLQSIRKKCKLDHIPPNSLFQEDWTAFQNSIRIIATCGELLRHCGDFEQQLANRILSTAGKYLSDSCSPRSLAGFQESILTDKKNSAKNPWQEYNYLQKDNPAEYASLMEILYTLKEKGSSNHNLLAAPRAALTRLNQQAHQLAFDSVFLRIKQQLLLISKMDSWNTAGIGETLTDELPAFSLTPLEYISNIGQYIMSLPLNLEPFVTQEDSALELALHAGKLPFPPEQGDELPELDNMADNWLGSIARATMQTYCDAILQIPELSPHSAKQLATDIDYLINVMDALGLQPSRTLQHIVTLLKTRPEDYRQVSKGLPRRLATTVATMRSVNY", "length": 770 }, "evidence": [ { "id": "F1SAB2", "url": "https://omabrowser.org/oma/group/F1SAB2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3T1G7-1", "protein_name": "Conserved oligomeric Golgi complex subunit 7", "gene_name": "Cog7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFSKFLADDFDVKDWINAAFRAGPKDGAAGKADGHAATLVMKLQLFIQEVNHAVEETSLQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDIAVISAKLTGMQSSLMMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQSVDQSKVFVKVFTEIDRMPQLLAYYYKCHKVQLLATWQELCQRDLPLDRQLTGLYHALLGAWHTQTQWATQVFKNPYEVVTVLLIQTLGALVPSLPMCLSEAVERAGPELELTRLLEFYDTTAHFAKGLEMALLPHLQDHNLVKVVELVDAVYGPYKPYQLKYGDLEESNLLIQISAVPLEHGEVIDCVQELSQSVHKLFGLASAAVDRCAKFTNGLGTCGLLTALKSLFTKYVSHFTNALQSIRKKCKLDDIPPNSLFQEDWTAFQNSVRIIATCGELLRQCGDFEQQLANRILSTAGKYLSDSYSPRSLAGFQDSILTDKKSPAKNPWQEYNYLQKDNPAEYANLMEILYTLKEKGSSNHNLLSVSRTALTRLNQQAHQLAFDSVFLRIKQQLLLVSRMDSWNTAGIGETLTDDLPAFSLTPLEYISNIGQYIMSLPLNLEPFVTQEDSALELALHAGKLPFPPEQGEELPELDNMADNWLGSIARATMQTYCDGILQIPAVTPHSTKQLATDIDYLINVMDALGLQPSRTLQNIATLLKAKPEEYRQVSKGLPRRLAATVATMRGVNY", "length": 770 }, "evidence": [ { "id": "F1SAB2", "url": "https://omabrowser.org/oma/group/F1SAB2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3UM29-1", "protein_name": "Conserved oligomeric Golgi complex subunit 7", "gene_name": "Cog7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFSKFLADDFDVKDWINAAFRAGPKDGAAGKADGHAATLVMKLQLFIQEVNHAVEETSLQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDIAVISAKLTGMQNSLMMLVDTPDYSEKCVHLEALKNRLEALASPQIVAAFTSQSVDQSKVFVKVFTEIDRMPQLLAYYYKCHKVQLLATWQELCQSDLPLDRQLTGLYDALLGAWHTQTQWATQVFKNPHEVVTVLLIQTLGALVPSLPMCLSAAVERAGPELELTRLLEFYDTTAHFAKGLEMALLPHLQDHNLVKVVELVDAVYGPYKPFQLKYGDMEENNLLIQISAVPLEHGEVIDCVQELSHSVHKLFGLASAAVDRCAKFTNGLGTCGLLTALKSLFAKYVSHFTNALQSIRKKCKLDDIPPNSLFQEDWTAFQNSVRIIATCGELLRQCGDFEQQLANRILSTAGKYLSDSYSPRSLAGFQDSILTDKKSPAKNPWQEYNYLQKDNPAEYASLMEILYTLKEKGSSNHNLLSASRTALTRLNQQAHQLAFDSVFLRIKQQLLLVSRMDSWNTAGIGETLTDDLPAFSLTPLEYISNIGQYIMSLPLNLEPFVTQEDSALELALHAGKLPFPPEQGDELPELDNMADNWLGSIARATMQTYCDVILQIPEVTPHSTKQLATDIDYLINVMDALGLQPSRTLQNIAALLKAKPEEYRQVSKGLPRRLAATVATMRGVNY", "length": 770 }, "evidence": [ { "id": "F1SAB2", "url": "https://omabrowser.org/oma/group/F1SAB2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54LC8-1", "protein_name": "Conserved oligomeric Golgi complex subunit 7", "gene_name": "cog7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MINNELKDIFSSNDFNSKTWINNLLSDCGGSGSSSGNAKSNQQSILTDQNNIKAELEIENICSNYLSKLQLYQIELNISLESITSESLLIVPKSIREVDRIRKESLHLKNRIKSISSKIGEMNNDSPQSMETVSVIEKLDQVKSRMEISIRSLKEAEKLLSFSKTVDQLFSSNDYLMISDKLEEVKQSLSVLSDVPEFREQSKKFNVYQDRLESQLKQPLQQSLQQKDLESCKNYLKIFTNIQRQDKFFIYYYQVRIDPLKLLWNSYSSSSSSSSSSSNFHNWLSKFYDEVLVMINSEFNWLSGLCPIDYIQVLENLIIHLFTTINPNVQSRIDQAITIANQTTQQPIKVNELLSIYKTTCSFLKSLSPIFPNIINSSSTPTTSPAVDKLFKVIFEPYKYFQNKFSEYEIKSVKSQLQSISPILTLQKKSGGGSGGSGNADFTNIIKNIENQFIPKSFQIAQQSIERFFDFTHTTDIDSYVNTVLNQIFTEISLILRDTINELKFITGLTTNYIIGSSGTFPNFNQQQQQINTPSSINGEVDPVKKLTNSHTRSHSRSGSGSGNSNSNSVGTSATLQNWEYFQGAMNLLQSIHQLLNKFQQFDNSTSLNIIHYLGNSNNSNNSSSNNDNDQFICNIRKFLLGKDLNKIQKLQISVQNLENIISSPLPLSSSSSVSKDQSISKKPLLLQESFNQISKLLSISQHFVYETLIYFIKLKLKELPKIVSNEWNNNNNNNNNPSQNNGGGGGGGLSYISQITDHLLTIPQQLDPYSEEELTRFSLSTSLQYPIKTCSNSEDDFYQNLLIQYQREKQFDDEQLLIEKLKEKQEQQQEQQEKEQQQEKEQQDADQDININTNNNNENDENDEDDELEDGIAHQWITIVAKATEKLYLQTIVEIITLNEPSCQQLSNDIGYLFNVLSALGVSAEPLLQKTQSLLEMNRDTFTSFYHQQLHNNNNNNNNNNGNSNNNNNNTNNISLLTNAEKNICNLIGKMRNIK", "length": 996 }, "evidence": [ { "id": "F1SAB2", "url": "https://omabrowser.org/oma/group/F1SAB2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9FGN0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 7", "gene_name": "COG7", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMLDLGPFSDEKFDAKRWVNSSCQARHPQDSLEKHLVDLEMKLQIASEEIGASLEEQSGGALLRVPRATRDVLRLRDDAVSLRGSVAGILQKLKKAEGSSADCIAALARVDNVKQRMEAAYKTLQDAAGLTQLSSTVEDVFASGDLPRAAETLASMRNCLSAVGEVAEFANVRKQLEVLEDRLEAMVQPRLTDALTYHKVDVAQDLRVILIRIGRFKSLELQYSKVRLKPIKQLWEDFDTKQRANKLANERSESQRLSSGDEFQSTSSQTSFASWLTSFYDELLLYLEQEWKWCMVAFPDDYMTLVPKLLVETMGVLGASFVSRLNLATGDAVPETKALAKGVMDLLSGDLPKGINIQTKHLEALIELHNVTGSFARNIQHLFAESELRILIDTLKAVYSPFESFKQKYGKMERAILSSEIAVVDLRGAVTRGVGAQGIELSETVRRMEESIPQVVVLLEAAVERCIGFTGGSEADELILALDDIMLQYISMLQETLKSLRVVCGVDGTGDGVGSKKDASAEKRESSRKMDLTSNEEWSIVQGALQILTVADCLTSRSSVFEASLRATLARLNSSLSISLFGTNLDHNLSHLKSEQTAGDLSMAGRASMDVAAIRLVDVPEKAHKLLNLLEQSKDPRFHALPLASQRVAAFADTVNELVYDVLISKVRQRLGEVSRLPIWSSVEEQTAFPLPNFSSYPQSYVTSVGEYLLTLPQQLEPLAEGISTNGDSNNEDAQFFATEWMFKVAEGATALYMDQLRGIQYISDRGAQQLSVDIEYLSNVLSALSMPIPPVLATFQTCLATPRGELKDVMKSEAGNELDCPTANLVCKMRRISFD", "length": 836 }, "evidence": [ { "id": "F1SAB2", "url": "https://omabrowser.org/oma/group/F1SAB2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VAD6-1", "protein_name": "Conserved oligomeric Golgi complex subunit 7", "gene_name": "Cog7", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDVSALSETTFSPAEWINANYKKFVEENGRDDSEAASAFIRSYVAKLQLYIFNVNNAVEESSRQVVASMPRIAKESAALQADVHRLQEKMSAMRLEVAAVQSETGECMATLERLNTKSQKLQVAKESLQESDGWGNLLAELEDGFERNDLKGVCDKLIALQKSLHAQEQLPGHAERQTQVEDFKNRLEALASPSVVQCFAEGNTEQAQHFVQIFTSIQRLPQLQQYYRAVQKNFWQQQWKQTLELQGTESQPQQQQFLTLYYDQLLEHCQRQVKWCSNLFGENSPQPFLVIAELLPALQPTRDAHILQLLKTSNERLEMLALFAKVNHSFVLHLNSLLEQSHITLSEELHRLLGEAIFEYFHKFIQQYPRLEETQLSTQVDRLSSNQATPSDGVRHLEESTRKLYEWLKEACERCASITSDLALCKLITLLNGIFKRQLESFGRIQRQIGLSLGSSSYAAQSENWSLLQYTMSQLQCLADFQVQLHQFEQDLHTRMVMLSNRLTKPSNRGPITIFQTCDHAARTQLLNSIADYQQKKSEATDSLGIFPQIYATLKSHFADTHDITLNILLQPIETHLAHIRPPVQDHAASGIEMPSFSFAPQESITQIGQYLLTLPQHLEPLLLSPSSLLKQALEVCNIKYTQAIPCADVLLSLVVEQCCVLYVTQILQIKSLPSSAATQLSVDIEYLSNVLEELGLSINLQLSQILTLLKAAPDQYLTLSSGCEPRLVTAIRQMRNIISTQ", "length": 742 }, "evidence": [ { "id": "F1SAB2", "url": "https://omabrowser.org/oma/group/F1SAB2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SAB2", "url": "https://www.uniprot.org/uniprotkb/F1SAB2" } ], "pmid": "" }, { "name": "Golgi transport complex", "id": "GO:0017119", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017119", "evidence": [ { "database": "UniProtKB", "id": "F1SAB2", "url": "https://www.uniprot.org/uniprotkb/F1SAB2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "F1SAB2", "url": "https://www.uniprot.org/uniprotkb/F1SAB2" } ], "pmid": "" }, { "name": "glycoprotein biosynthetic process", "id": "GO:0009101", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009101", "evidence": [ { "database": "UniProtKB", "id": "F1SAB2", "url": "https://www.uniprot.org/uniprotkb/F1SAB2" } ], "pmid": "" }, { "name": "protein stabilization", "id": "GO:0050821", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050821", "evidence": [ { "database": "UniProtKB", "id": "F1SAB2", "url": "https://www.uniprot.org/uniprotkb/F1SAB2" } ], "pmid": "" }, { "name": "retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum", "id": "GO:0006890", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006890", "evidence": [ { "database": "UniProtKB", "id": "F1SAB2", "url": "https://www.uniprot.org/uniprotkb/F1SAB2" } ], "pmid": "" }, { "name": "Golgi organization", "id": "GO:0007030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007030", "evidence": [ { "database": "UniProtKB", "id": "F1SAB2", "url": "https://www.uniprot.org/uniprotkb/F1SAB2" } ], "pmid": "" }, { "name": "protein localization to Golgi apparatus", "id": "GO:0034067", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034067", "evidence": [ { "database": "UniProtKB", "id": "F1SAB2", "url": "https://www.uniprot.org/uniprotkb/F1SAB2" } ], "pmid": "" }, { "name": "retrograde transport, vesicle recycling within Golgi", "id": "GO:0000301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000301", "evidence": [ { "database": "UniProtKB", "id": "F1SAB2", "url": "https://www.uniprot.org/uniprotkb/F1SAB2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SBY3-1", "uniprot_ac": "F1SBY3", "uniprot_id": "F1SBY3_PIG", "mass": { "chemical_mass": 17876.0, "monoisotopic_mass": 17876.0 }, "refseq": { "ac": "NP_001231463", "name": "vesicle transport protein SFT2A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231463" }, "gene_names": [ { "name": "SFT2D1", "type": "recommended", "evidence": [ { "id": "F1SBY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBY3" } ] }, { "name": "SFT2D1", "type": "synonym", "evidence": [ { "id": "NP_001231463", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231463" } ] } ], "protein_names": [ { "name": "Vesicle transport protein", "type": "recommended", "evidence": [ { "id": "F1SBY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBY3/entry#names_and_taxonomy" } ] }, { "name": "vesicle transport protein SFT2A", "type": "synonym", "evidence": [ { "id": "NP_001231463", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231463" } ] } ], "function": [ { "annotation": "May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FCN3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCN3#function" }, { "database": "UniProtKB", "id": "RU363111", "url": "https://www.uniprot.org/uniprotkb/RU363111#function" }, { "database": "UniProtKB", "id": "ARBA00003566", "url": "https://www.uniprot.org/uniprotkb/ARBA00003566#function" }, { "database": "UniProtKB", "id": "F1SBY3", "url": "https://www.uniprot.org/uniprotkb/F1SBY3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBY3", "url": "https://www.uniprot.org/uniprotkb/F1SBY3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SFT2D1", "url": "https://www.uniprot.org/uniprotkb/F1SBY3", "locus": { "chromosome": "1", "start_pos": 2593506, "end_pos": 2576729, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004020", "url": "https://www.ensembl.org/id/ENSSSCG00000004020" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004020", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004020", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513321", "url": "https://www.ncbi.nlm.nih.gov/gene/100513321", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513321", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513321", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IAAIVWK", "url": "https://omabrowser.org/oma/group/IAAIVWK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SBY3", "url": "https://www.orthodb.org/?gene=F1SBY3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23137", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23137", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23137:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23137:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04178", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04178", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231463", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231463", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FCN3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCN3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBY3", "url": "https://www.uniprot.org/uniprotkb/F1SBY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBY3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBY3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPGGIKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWRKKGLALLFCILQFLSLTWYSLSYIPYARDAVIKCCSSLLS", "length": 159, "header": "tr|F1SBY3-1|F1SBY3_PIG Isoform 1 of Vesicle transport protein OS=Sus scrofa OX=9823 GN=SFT2D1 PE=3 SV=1 CANONICAL=F1SBY3-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FCN3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBY3/entry#A0A8W4FCN3-1", "sequence": { "sequence": "MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPGGIKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMIWRKKGLALLFCILQFLSLTWYSLSYIPYARDAVIKCCSSLLS", "length": 147, "header": "tr|A0A8W4FCN3-1|F1SBY3_PIG Computationally mapped isoform of Vesicle transport protein OS=Sus scrofa OX=9823 GN=SFT2D1 PE=3 SV=1 CANONICAL=F1SBY3-1" }, "locus": { "chromosome": "1", "start_pos": 2593029, "end_pos": 2576892, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097509.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097509.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076613.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076613.1" } ] } }, { "isoform_ac": "F1SBY3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBY3/entry#F1SBY3-1", "sequence": { "sequence": "MEKLRRVLSGQDDEEQGLTAQVLDASTLSFNTRLKWFVICFVSGIFFSFLGTGLLWLPGGIKLFAVFYTFGNIAALASTCFLMGPVKQLKKMFETTRLLATIVMILCLVLTLCAALWWRKKGLALLFCILQFLSLTWYSLSYIPYARDAVIKCCSSLLS", "length": 159, "header": "tr|F1SBY3-1|F1SBY3_PIG Isoform 1 of Vesicle transport protein OS=Sus scrofa OX=9823 GN=SFT2D1 PE=3 SV=1 CANONICAL=F1SBY3-1" }, "locus": { "chromosome": "1", "start_pos": 2593029, "end_pos": 2576892, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004445.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004445.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004344.2", "url": "https://www.ensembl.org/id/ENSSSCP00000004344.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FCN3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCN3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513321", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513321", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2N427-1", "protein_name": "Vesicle transport protein", "gene_name": "Sft2d1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKLRRVLSGQDDEEQGLTAQVLDASSLSFNTRLKWFIICFVAGVFCSILGTGLLWLPNGIKLFAVFYTLGNLAALASTCFLMGPVKQLKKMFETTRLLATVIMLLCFVFTLCAALWWRKKGLALLFCILQFLSMTWYSLSYIPYARDAVLKCCSSLFS", "length": 159 }, "evidence": [ { "id": "F1SBY3", "url": "https://omabrowser.org/oma/group/F1SBY3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0XTJ6-1", "protein_name": "Vesicle transport protein", "gene_name": "SFT2D1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "LSSSGAEITLGKWEAKLPLSAIHCLVLDASTLSFGTRVKWFAICFIAGVACSILGTALLWLPKGIKLFAVFYTLGNIAALASTCFLMGPLKQLKTMFEPKRLIATVVMLLFLVLTLCAVFWWNKKGLALIFCILQFLAMTWYSLSYIPYARDAVIKCFTSCLE", 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"MEKLRRVLSGQDDEEQGLTAQVLDASSLSFNTRLKWFVICFVAGIFFSFLGTGLLWLPNGMKLFAVFYTLGNLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFCILQFLSMTWYSLSYIPYARDAVLKCCSSLLG", "length": 159 }, "evidence": [ { "id": "F1SBY3", "url": "https://omabrowser.org/oma/group/F1SBY3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WV19-1", "protein_name": "Vesicle transport protein SFT2A", "gene_name": "SFT2D1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEKLRRVLSGQDDEEQGLTAQVLDASSLSFNTRLKWFAICFVCGVFFSILGTGLLWLPGGIKLFAVFYTLGNLAALASTCFLMGPVKQLKKMFEATRLLATIVMLLCFIFTLCAALWWHKKGLAVLFCILQFLSMTWYSLSYIPYARDAVIKCCSSLLS", "length": 159 }, "evidence": [ { "id": "F1SBY3", "url": "https://omabrowser.org/oma/group/F1SBY3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9LT07-1", "protein_name": "Vesicle transport protein", "gene_name": "MQM1.18", "tax_id": 3702, "organism": 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"https://www.reactome.org/PathwayBrowser/#R-SSC-9931295", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020932879", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932879", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FCQ6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FF31", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FF31-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF31-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEM2", "url": "https://www.uniprot.org/uniprotkb/F1SEM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SEM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LLF2", "url": "https://www.uniprot.org/uniprotkb/I3LLF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LLF2-1", "url": "https://www.uniprot.org/uniprotkb/I3LLF2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LRG0", "url": "https://www.uniprot.org/uniprotkb/I3LRG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LRG0-1", "url": "https://www.uniprot.org/uniprotkb/I3LRG0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSSLGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDSSVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSIVEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTIFSKKNFESLPEAFSVASAAAALSQNRYHVPVVVVPEGSPSDTQEQAFLRLQVTNVLSQPLTQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYIANTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGAFIADSHQNFALFFQLVDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTYTLYLIIGDATLKNPIHWNVADVVIRFPEEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPTVVSNTFTALILSPLLLLFALWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAIKRTAH", "length": 631, "header": "tr|F1SEM2-1|F1SEM2_PIG Isoform 1 of Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Sus scrofa OX=9823 GN=RPN2 PE=1 SV=5 CANONICAL=F1SEM2-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FCQ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SEM2/entry#A0A8W4FCQ6-1", "sequence": { "sequence": "ISPQGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSSLGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDSSVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSIVEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTIFSKKNFESLPEAFSVASAAAALSQNRYHVPVVVVPEGSPSDTQEQAFLRLQVTNVLSQPLTQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYIANTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGAFIADSHQNFALFFQLVDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTYTLYLIIGDATLKNPIHWNVADVVIRFPEEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPTVVSNTFTALILSPLLLLFALWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAIKRSFLNQKRALVISFKYIKTTTVYALTH", "length": 654, "header": "tr|A0A8W4FCQ6-1|F1SEM2_PIG Computationally mapped isoform of Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Sus scrofa OX=9823 GN=RPN2 PE=1 SV=1 CANONICAL=F1SEM2-1" }, "locus": { "chromosome": "17", "start_pos": 40374562, "end_pos": 40326195, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095707.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095707.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077184.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077184.1" } ] } }, { "isoform_ac": "A0A8W4FF31-1", "url": "https://www.uniprot.org/uniprotkb/F1SEM2/entry#A0A8W4FF31-1", "sequence": { "sequence": "ISPQGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSSLGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDSSVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSIVEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTIFSKKNFESLPEAFSVASAAAALSQNRYHVPVVVVPEGSPSDTQEQAFLRVTNVLSQPLTQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYIANTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGAFIADSHQNFALFFQLVDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTYTLYLIIGDATLKNPIHWNVADVVIRFPEEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPTVVSNTFTALILSPLLLLFALWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAIKRIAAEQSSRLAKYRTLR", "length": 642, "header": "tr|A0A8W4FF31-1|F1SEM2_PIG Computationally mapped isoform of Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Sus scrofa OX=9823 GN=RPN2 PE=1 SV=1 CANONICAL=F1SEM2-1" }, "locus": { "chromosome": "17", "start_pos": 40375877, "end_pos": 40326195, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104353.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104353.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077472.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077472.1" } ] } }, { "isoform_ac": "F1SEM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SEM2/entry#F1SEM2-1", "sequence": { "sequence": "MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSSLGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDSSVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSIVEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTIFSKKNFESLPEAFSVASAAAALSQNRYHVPVVVVPEGSPSDTQEQAFLRLQVTNVLSQPLTQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYIANTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGAFIADSHQNFALFFQLVDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTYTLYLIIGDATLKNPIHWNVADVVIRFPEEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPTVVSNTFTALILSPLLLLFALWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAIKRTAH", "length": 631, "header": "tr|F1SEM2-1|F1SEM2_PIG Isoform 1 of Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Sus scrofa OX=9823 GN=RPN2 PE=1 SV=5 CANONICAL=F1SEM2-1" }, "locus": { "chromosome": "17", "start_pos": 40378544, "end_pos": 40322690, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008021.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008021.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007807.5", "url": "https://www.ensembl.org/id/ENSSSCP00000007807.5" } ] } }, { "isoform_ac": "I3LLF2-1", "url": "https://www.uniprot.org/uniprotkb/F1SEM2/entry#I3LLF2-1", "sequence": { "sequence": "ISPQGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSSLGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDSSVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSIVEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTIFSKKNFESLPEAFSVASAAAALSQNRYHVPVVVVPEGSPSDTQEQAFLRLQVTNVLSQPLTQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYIANTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGAFIADSHQNFALFFQLVDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTYTLYLIIGDATLKNPIHWNVADVVIRFPEEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPTVVSNTFTALILSPLLLLFALWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAIKR", "length": 628, "header": "tr|I3LLF2-1|F1SEM2_PIG Computationally mapped isoform of Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Sus scrofa OX=9823 GN=RPN2 PE=1 SV=3 CANONICAL=F1SEM2-1" }, "locus": { "chromosome": "17", "start_pos": 40374338, "end_pos": 40326195, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027680.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027680.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024920.3", "url": "https://www.ensembl.org/id/ENSSSCP00000024920.3" } ] } }, { "isoform_ac": "I3LRG0-1", "url": "https://www.uniprot.org/uniprotkb/F1SEM2/entry#I3LRG0-1", "sequence": { "sequence": "MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSSLGAQVPDEKISISNETKDLLLAAVSEDSSVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSIVEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTIFSKKNFESLPEAFSVASAAAALSQNRYHVPVVVVPEGSPSDTQEQAFLRLQVTNVLSQPLTQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYIANTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGAFIADSHQNFALFFQLVDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTYTLYLIIGDATLKNPIHWNVADVVIRFPEEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPTVVSNTFTALILSPLLLLFALWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAIKRIAAEQSSRLAKYRTLRTAH", "length": 615, "header": "tr|I3LRG0-1|F1SEM2_PIG Computationally mapped isoform of Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Sus scrofa OX=9823 GN=RPN2 PE=1 SV=4 CANONICAL=F1SEM2-1" }, "locus": { "chromosome": "17", "start_pos": 40378544, "end_pos": 40322690, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027093.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027093.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026694.4", "url": "https://www.ensembl.org/id/ENSSSCP00000026694.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FCQ6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCQ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9768727", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9768727", "resource": "Reactome", "description": "Regulation of CDH1 posttranslational processing and trafficking to plasma membrane" }, { "id": "R-SSC-9931295", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9931295", "resource": "Reactome", "description": "PD-L1(CD274) glycosylation and translocation to plasma membrane" } ], "orthologs": [ { "uniprot_canonical_ac": "P04844-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2", "gene_name": "RPN2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPPGSSTVFLLALTIIASTWALTPTHYLTKHDVERLKASLDRPFTNLESAFYSIVGLSSLGAQVPDAKKACTYIRSNLDPSNVDSLFYAAQASQALSGCEISISNETKDLLLAAVSEDSSVTQIYHAVAALSGFGLPLASQEALSALTARLSKEETVLATVQALQTASHLSQQADLRSIVEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAIFSKKNFESLSEAFSVASAAAVLSHNRYHVPVVVVPEGSASDTHEQAILRLQVTNVLSQPLTQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFMNVKFSSGYYDFLVEVEGDNRYIANTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQLVDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDNKNVYKFELDTSERKIEFDSASGTYTLYLIIGDATLKNPILWNVADVVIKFPEEEAPSTVLSQNLFTPKQEIQHLFREPEKRPPTVVSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAVKRTAH", "length": 631 }, "evidence": [ { "id": "F1SEM2", "url": "https://omabrowser.org/oma/group/F1SEM2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P25235-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2", "gene_name": "Rpn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPPGSSAVFLLALTITASTQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLNSLGAQVPDVKKACAFIKSNLDPSNVDSLFYAAQSSQVLSGCEISVSNETRDLLLAAVSEDSSVAQIYHAVAALSGFGLPLASHEALGALTARLSKEETVLATVQALHTASHLSQQADLRNIVEEIEDLVARLDELGGVYLQFEEGLELTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTIFSKKNFESLSEAFSVASAAAALSQNRYHVPVVVVPEGSASDTQEQAILRLQVSSVLSQPLAQAAVKLEHAKSVASRATVLQKMPFSLVGDVFELNFKNVKLPSGYYDFSVRVEGDNRYIANTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQLVDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDNKNVYKFELDTSERKIEFDSASGTYTLYLIIGDATLKNPILWNVADVVIKFPEEEAPSTVLSQNLFTPKQEIQHLFREPEKRPPTVVSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTVIFHLGHAAMLGLMYVYWTQLNMFQTLKYLAVLGTVTFLAGNRMLAQQAVKRTAH", "length": 631 }, "evidence": [ { "id": "F1SEM2", "url": "https://omabrowser.org/oma/group/F1SEM2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3SZI6-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2", "gene_name": "RPN2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALPGSSTVFLLALTIIASTQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSSLGAQVPDVKKACTFIKSNLDPSNVDSLFYAAQSSQALSGCEISISNETKDLLLAAVSEDSSVAQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSIVEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAIFSKKNFESLSEAFSVASAAAALSENRYHVPVVVVPEGSPSYTQEQAILRLQVTNVLSQPLTQATVKLEHAKSVASRATVLQKTSFTLIGDVFELNFMNVKFSSGYYDFSVKVEGDNRYIANTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQLVDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYKFELDTSERKLEFDSASGTYTLYLIIGDATLKNPILWNVADVVIRFPEDDVPSTVLSKNIFTPKQEIQHLFREPEKRPPTVVSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIVFHLGHAAMLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAIKRTAH", "length": 631 }, "evidence": [ { "id": "F1SEM2", "url": "https://omabrowser.org/oma/group/F1SEM2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54HG9-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit swp1", "gene_name": "swp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLIILIVLSILISIVISGSVQSKITTTRGISNVYSKNDINNIKQFISSKYNGNTKLYGESLKDTFYGVGVLTRIGETNIEATKDICKQTKEQLKQNKFTDIELVFNGVTILSELKCLQGESSSSLGNEQQLQDLLKNKLENGSLLEKTQAINIYFTLSSAKAIDSKTVSIIDPLLIQAVNSMVSLMDEDGTFKSVSTDDEGNLQNTAAAYFALARLSHRLKSNEVDKLVAKVVNKVDTVLASADETTDSLYFNDLSTTSSLLHGLLSLASVNDKVADVISNKQINQISEYLLRQKNVESLSDAYHLIVALKRCQKNSISQPISLALVKSIYSPSGLNDIRVRVTDIFDQPIEASIVINKVVSSKNPRSTPILSGKEMKFQSSDNSFVADLSNENLKLGSYNFEFKVQPVDTDSYKSITNIQIITITGAVTVNDMKLSYAPKSDQLGSPKTTNEVQFGQKLPLIEIPSNNIARIFFRIASEAQPYQAQQVGIRFYSPAREAVVPATYSADAYSYTFTNKDACKILGCQSGNYQLDLIIGDQSITPLQWNFGEINLKFNQSTIPTNRYPEQLPISHNFRVAEKRPPQSISSLFTLLVLSPIAIFVIGLLFVGTNLGRFPTGMGFIYTIGFLGCISATGLLIVNYWLHSTMDVTLKNLALLMIPLVFFGHKSMSYYSNLSSSNIKKD", "length": 685 }, "evidence": [ { "id": "F1SEM2", "url": "https://omabrowser.org/oma/group/F1SEM2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q93Z16-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2", "gene_name": "RPN2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMAGGNVRFLVLILAVAICGAASVFQPISDSHRSAALDVFVPVDGSYKSLEEAYEALKTLEILGIDKKSDLSSKTCENVVKVLQSSSSTLKDAFYALNVNGILKCKIGEAGPKDIVSQLQAGVKDAKLLLDFYYSVRGLVLAKEQFPGTHISLGDAEAIFRSIKSLSQSDGRWRYSSNNPESSTFAAGLAYETLAGVISLAPSEFDPSLIQSVKTGILKLSDSIQKYDDGTFYFDEKSVDASQGPISTTASVIRGLTSFAASESTGLNLPGDKIVGLAKFFLGVGIPGDAKDFFNQIDALACLEDNKFSVPLILSLPSTVISLTKKEPLKVKVSTVLGSKAPALSVKLTQALSSKSVDSSVINNQELKFDADSATYFLDSFPKNFDIGKYTFVFKIVLDESAHEKVYITEAQTKVPIAATGAISIENAEIAVLDSDIGSVESQKKLDLTKDGAVSLSANHLQKLRLSFQLTTPLGNAFKPHQAFFKLKHESQVEHIFLVKTSGKKSELVLDFLGLVEKLYYLSGKYEIQLTIGDASMENSLLSNIGHIELDLPERPEKATRPPLQSTEPYSRYGPKAEISHIFRIPEKLPAKQLSLVFLGVIVLPFIGFLIGLTRLGVNIKSFPSSTGSAISALLFHCGIGAVLLLYVLFWLKLDLFTTLKALSLLGVFLLFVGHRTLSQLASASNKLKSA", "length": 691 }, "evidence": [ { "id": "F1SEM2", "url": "https://omabrowser.org/oma/group/F1SEM2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9DBG6-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2", "gene_name": "Rpn2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPPGSSAVFLLALTITASVQALTPTHYLTKQDVERLKASLDRPFTDLESAFYSIVGLSSLGVQVPDVKKACTFIKSNLDPSNVDSLFYAAQSSQVLSGCEISVSNETKELLLAAVSEDSPIAQIYHAVAALSGFGLPLASNEALGALTARLGKEETVLATVQALQTASHLSQQADLRNIVEEIEDLVARLDELGGVYLQFEEGLELTALFVAATYKLMDHVGTEPSMKEDQVIQLMNTIFSKKNFESLSEAFSVASAAAALSQNRYHVPVVVVPEGSTSDTQEQAILRLQVSNVLSQPLAQAAVKLEHAKSAATRATVLQKTPFSLVGNVFELNFKNVKLSSGYYDFSVRVEGDSRYIANTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQLVDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDNKNVYKFELDTSERKIEFDSASGTYTLYLIIGDATLKNPILWNVADVVIKFPEEEAPSTVLSQSLFTPKQEIQHLFREPEKRPPTVVSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTVIFHLGHAAMLGLMYIYWTQLNMFQTLKYLAVLGTVTFLAGNRMLAQHAVKRTAH", "length": 631 }, "evidence": [ { "id": "F1SEM2", "url": "https://omabrowser.org/oma/group/F1SEM2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", 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"https://www.uniprot.org/uniprotkb/F1SBY7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "RGWTVPTVKPVPEAHTGRGAGPRPGVYGPAEAQTVVFEDVCPLLTSFLDGYHVCIMAYGQTGSGKSFTMLGPHAQDAPASRDELGILPRAAHELFRLISEDPSRSPGVQVSVVEVYNNGIFDLLASDGCGVTSGVKRRVLTTHEGQEVSGLTHESVHSAEEFMTLVGAGLQLRARQATAVHSDSSRSHLVVTLTLTRAASSHSTGEWHLRPQPTLGRSPSVPRRASFVSPSPQALRRASEQVHAKLQLVDLAGSECAGVSGATGLALRETSSINRSLAALADVLGALSEGRGHVPYRNSRLTHLLQDALGMRPLASLPEPAAPGHLPGGQPLGTCGPRKRRAPRWGVDLGEAEAEPPPCGEWRGEMAGVADLGPWAFGDAISHWESLHLRVWLLCQGGDAKLQVIVCVSPGQKHVAETLQSLGFGARARQVERGRPAPRKRR", "length": 442, "header": "tr|F1SBY7-1|F1SBY7_PIG Isoform 1 of Kinesin-like protein OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1SBY7-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FCX3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBY7/entry#A0A8W4FCX3-1", "sequence": { "sequence": "MAYGQTGSGKSFTMLGPHAQDAPASRDELGILPRAAHELFRLISEDPSRSPGVQVSVVEVYNNGIFDLLASDGCGVTSGVKRRVLTTHEGQEVSGLTHESVHSAEEFMTLVGAGLQLRARQATAVHSDSSRSHLVVTLTLTRAASSHSTADTRSNQPLPQGLQRLDPQQPTLGRSPSVPRRASFVSPSPQALRRASEQVHAKLQLVDLAGSECAGVSGATGLALRETSSINRSLAALADVLGALSEGRGHVPYRNSRLTHLLQDALGMRPLASLPEPAAPGHLPGGQPLGTCGPRKRRAPRWGVDLGEAEAEPPPCGEWRGEMAGVADLGPWAFGDAISHWESLHLRVWLLCQGGDAKLQVIVCVSPGQKHVAETLQSLGFGARARQVERGRPAPRKRR", "length": 399, "header": "tr|A0A8W4FCX3-1|F1SBY7_PIG Computationally mapped isoform of Kinesin-like protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=F1SBY7-1" }, "locus": { "chromosome": "1", "start_pos": 1535312, "end_pos": 1527533, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104344.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104344.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076703.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076703.1" } ] } }, { "isoform_ac": "A0A8W4FIZ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SBY7/entry#A0A8W4FIZ8-1", "sequence": { "sequence": "RGWTVPTVKPVPEAHTGRGAGPRPGVYGPAEAQTVVFEDVCPLLTSFLDGYHVCIMAYGQTGSGKSFTMLGPHAQDAPASRDELGILPRAAHELFRLISEDPSRSPGVQVSVVEVYNNGIFDLLASDGCGVTSGVKRRVLTTHEGQEVSGLTHESVHSAEEFMTLVGAGLQLRARQATAVHSDSSRSHLVWHLRPQPTLGRSPSVPRRASFVSPSPQALRRASEQVHAKLQLVDLAGSECAGVSGATGLALRETSSINRSLAALADVLGALSEGRGHVPYRNSRLTHLLQDALGMRPLASLPEPAAPGHLPGGQPLGTCGPRKRRAPRWGVDLGEAEAEPPPCGEWRGEMAVSPPARVASLSRRRREVTGDCVRVPRPEARG", "length": 382, "header": "tr|A0A8W4FIZ8-1|F1SBY7_PIG Computationally mapped isoform of Kinesin-like protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=F1SBY7-1" }, "locus": { "chromosome": "1", "start_pos": 1537814, "end_pos": 1527612, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095810.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095810.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079430.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079430.1" } ] } }, { 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"url": "https://www.ensembl.org/id/ENSSSCP00000004340.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FCX3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCX3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": 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"microtubule motor activity", "id": "GO:0003777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003777", "evidence": [ { "database": "UniProtKB", "id": "F1SBY7", "url": "https://www.uniprot.org/uniprotkb/F1SBY7" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "F1SBY7", "url": "https://www.uniprot.org/uniprotkb/F1SBY7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "F1SBY7", "url": "https://www.uniprot.org/uniprotkb/F1SBY7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SBY7", "url": "https://www.uniprot.org/uniprotkb/F1SBY7" } ], "pmid": "" }, { "name": 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"title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SB21-1", "uniprot_ac": "F1SB21", "uniprot_id": "F1SB21_PIG", "mass": { "chemical_mass": 61894.0, "monoisotopic_mass": 61894.0 }, "refseq": {}, "gene_names": [ { "name": "LOC102157639", "type": "recommended", "evidence": [ { "id": "F1SB21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB21" } ] } ], "protein_names": [ { "name": "Multidrug and toxin extrusion protein", "type": "recommended", "evidence": [ { "id": "F1SB21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB21/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SB21", "url": "https://www.uniprot.org/uniprotkb/F1SB21" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC102157639", "url": "https://www.uniprot.org/uniprotkb/F1SB21", "locus": {} } ], "crossref": [ { "id": "F1SB21", "url": "https://alphafold.ebi.ac.uk/entry/F1SB21", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000018046", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000018046", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13132", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13132", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002528", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002528", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045069", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045069", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KISHHHI", "url": "https://omabrowser.org/oma/group/KISHHHI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11206", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11206", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01554", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01554", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FG66", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG66-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG66-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SB21", "url": "https://www.uniprot.org/uniprotkb/F1SB21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SB21-1", "url": "https://www.uniprot.org/uniprotkb/F1SB21-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSRPLSGPLEVLFSPASPRSRRVSPQPPLLPGGPSLRGPRVPRGLAGAPVRSLGPEGRVTRCPPLPRQFLAQLMTFLISIVSSIFCGHLGRAELDAVMLAVSVVNVSGISIGTGLASACDTLMSQSFGGRNLKRVGVILQRGVLILLLCCLPCWAIFINTESLLRLLKQDPEVSRSAASPACICFLFYLQATFLFQLQAKYLQNQGIILPQVITGIVANILNVGMNALLLSALDLGMQGSAWANTTSQFFLCALLFLYLRWKKIHVDTWGGWTMDCFQEWGSFIQLAIPSMFMVCIEWWTFEVGTFLAGLSRVQRKPVNNLANHVSRVPLGFGVAASVRVGNALGAGNPEQARHSGVTVLLCAGVCALVISTVLAALKDVVAYAFTRDKAIISLVSRVMPIFAPFHLFDALAGTSGGVLRGTGKQKMGAFSNAIGYYVFGFPLGVSLMFAAHHGIIGLWSGLTVCVSLQTLFYLVHIWRTDWTSAAQQVRGSAAPGRGPLGLPILEKDGPRGVILPDVVRPERQATQLMGTEGSDQDAVPTVGAVLTGGQLLLYRGLACALAVATLAAGVAVRLLHGRG", "length": 580, "header": "tr|F1SB21-1|F1SB21_PIG Isoform 1 of Multidrug and toxin extrusion protein OS=Sus scrofa OX=9823 GN=LOC102157639 PE=3 SV=4 CANONICAL=F1SB21-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FG66-1", "url": "https://www.uniprot.org/uniprotkb/F1SB21/entry#A0A8W4FG66-1", "sequence": { "sequence": "METPAAPAPETPVAAPDGAQCPRVPGWRRCLRGLRGALPPDVGREVVELMMLAGPVFLAQLMTFLISIVSSIFCGHLGRAELDAVMLAVSVVNVSGISIGTGLASACDTLMSQSFGGRNLKRVGVILQRGVLILLLCCLPCWAIFINTESLLRLLKQDPEVSRSAASPACICFLFYLQATFLFQLQAKYLQNQGIILPQVITGIVANILNVGMNALLLSALDLGMQGSAWANTTSQFFLCALLFLYLRWKKIHVDTLGGWGRAVCFQSHSRGRAGSRSRTRTPGHPHIWMLGSSHLSSVRVGNALGAGNPEQARHSGVTVLLCAGVCALVISTVLAALKDVVAYAFTRDKAIISLVSRVMPIFAPFHLFDALAGTSGGVLRGTGKQKMGAFSNAIGYYVFGFPLGVSLMFAAHHGIIGLWSGLTVCVSLQTLFYLVHIWRTDWTSAAQQAQVRAGLRRVRAAEPTGTELPILEKDGPRGVILPDVVRPERQATQLMGTEGSDQDAVPTVGAVLTGGQLLLYRGLACALAVATLAAGVAVRLLHGRG", "length": 546, "header": "tr|A0A8W4FG66-1|F1SB21_PIG Computationally mapped isoform of Multidrug and toxin extrusion protein OS=Sus scrofa OX=9823 GN=LOC102157639 PE=3 SV=1 CANONICAL=F1SB21-1" }, "locus": { "chromosome": "12", "start_pos": 60019633, "end_pos": 59977419, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095097.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095097.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077309.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077309.1" } ] } }, { "isoform_ac": "F1SB21-1", "url": "https://www.uniprot.org/uniprotkb/F1SB21/entry#F1SB21-1", "sequence": { "sequence": "MLSRPLSGPLEVLFSPASPRSRRVSPQPPLLPGGPSLRGPRVPRGLAGAPVRSLGPEGRVTRCPPLPRQFLAQLMTFLISIVSSIFCGHLGRAELDAVMLAVSVVNVSGISIGTGLASACDTLMSQSFGGRNLKRVGVILQRGVLILLLCCLPCWAIFINTESLLRLLKQDPEVSRSAASPACICFLFYLQATFLFQLQAKYLQNQGIILPQVITGIVANILNVGMNALLLSALDLGMQGSAWANTTSQFFLCALLFLYLRWKKIHVDTWGGWTMDCFQEWGSFIQLAIPSMFMVCIEWWTFEVGTFLAGLSRVQRKPVNNLANHVSRVPLGFGVAASVRVGNALGAGNPEQARHSGVTVLLCAGVCALVISTVLAALKDVVAYAFTRDKAIISLVSRVMPIFAPFHLFDALAGTSGGVLRGTGKQKMGAFSNAIGYYVFGFPLGVSLMFAAHHGIIGLWSGLTVCVSLQTLFYLVHIWRTDWTSAAQQVRGSAAPGRGPLGLPILEKDGPRGVILPDVVRPERQATQLMGTEGSDQDAVPTVGAVLTGGQLLLYRGLACALAVATLAAGVAVRLLHGRG", "length": 580, "header": "tr|F1SB21-1|F1SB21_PIG Isoform 1 of Multidrug and toxin extrusion protein OS=Sus scrofa OX=9823 GN=LOC102157639 PE=3 SV=4 CANONICAL=F1SB21-1" }, "locus": { "chromosome": "12", "start_pos": 60019814, "end_pos": 59977419, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019641.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019641.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019121.5", "url": "https://www.ensembl.org/id/ENSSSCP00000019121.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FG66", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG66" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AMJ6-1", "protein_name": "Multidrug and toxin extrusion protein", "gene_name": "SLC47A1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEVQKKALGVFIFLLHSAVLVEKRLSRGAIKPQLNKDTWQIGSFVAQLLGFLISVVSSIFCGHLGKAELDAVTLAVSVINVIGISVGSGLASACDTLMSQTYGSKNLKQVGTILQRGILILLLFCFPCWAIFINTEQILLLLRQDPKVSRLTQVYVMIFIPALPAAFLYQLQTRYLLSQAIILPQVVTGIAANILNVAMNAFFLYALKLGMVGSAWANTASQYTQAILLFLFVWWKKIHVQTWGGWTRDCLLDWGSYIQLALPSMLMMCIEWWTFEIGSFLAGLLSVVELGAQSVIYELSSAAYMVPLGFSVAVSVRVGNALGSGDVVQAKTSCITAVLCAGVFAVVVATLLGTLKDVVGYIFTNDREIVMLVSKVMIIFAPFHLFDAAAATCGGVLRGTGKQKLGAIANAVGYYAVGLPIGISLMFAAKMGVLGLWVGMIVCISLQSLSFSAFVMRMDWKKAAEEAQVRAGLKKQLEDVNSNGTAANKTSAIDYISVDTDTVETVVLPDCMVGGGERHPDHQLITQEEPADVPVPPAVAWRALIVCRVLAAAAALAVLLVGVLVRLLTAHS", "length": 572 }, "evidence": [ { "id": "F1SB21", "url": "https://omabrowser.org/oma/group/F1SB21/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LN35-1", "protein_name": "Multidrug and toxin extrusion protein", "gene_name": "Slc47a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPAEDSLGAAIQPPELAPVPERSLRILLGLREALSSDVRQEAAALAALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLFLRQDPEVARLAQVYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGSAWANTTSQFFLSALLFLYVWWKGIHIHTWGGWTRECFQEWSSYTRLAIPSMFMVCIEWWTFEIGTFLAGLVNVTELGAQAVIYELASVAYMVPFGFGVAASVRVGNALGAGNADQARCSCTTVLLCTGVCALLVGILLAALKDVVAYVFTNDKDIISLVSQVMPIFAPFHLFDALAGTCGGVLRGTGKQKIGAVLNAIGYYGFGFPIGVSLMFAAKLGIIGLWAGLIVCVFFQALSYLIYILRTNWNRVAEQAQVRAGLKSNKEMIPTPADLPILEREVIDGVILPDIIRPESQTGQLVVEENSQCVVPTVGEVLTGRQLVVYRGTALIVSIAVLIAGIVVRVINDRG", "length": 572 }, "evidence": [ { "id": "F1SB21", "url": "https://omabrowser.org/oma/group/F1SB21/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q05497-1", "protein_name": "Uncharacterized transporter YDR338C", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAGILSKTLSEVHPSLRTNGMGIGNTHRRISLGFLPPNKKNPLVRKFRARTRNIDQRSFRSLTDDFGSNVHEPNPYLGNIDEEPDLYYHDEEDGELSRTISLPSRVSETPELSPQDVDWILHEHERRYSSVCNSDNEEASQSNTPDRIQEYSGRELEYDEFMNRLQAQKQKLTRSAVTDAKGTSHHRRPSFVSVTSRGSVPTIYQEIDENDSEALAELAHSHVTFKSEARVLASYSFPLIFTFLLEQIFPMVCSLTVGHLGKNELAAVSLASMTSNITLAIFEGIATSLDTLCPQAYGSGRFYSVGVHLQRCIAFSLVIYIPFAVMWWYSEPLLSYIIPEKELINLTSRFLRVLILGAPAYIFFENLKRFLQAQGIFDAGIYVLTICAPLNVLVSYTLVWNKYIGVGFIGAAIAVVLNFWLMFFLLLFYALYIDGRKCWGGFSRKAFTHWNDLGHLAFSGIIMLEAEELSYELLTLFSAYYGVSYLAAQSAVSTMAALLYMIPFAIGISTSTRIANFIGAKRTDFAHISSQVGLSFSFIAGFINCCILVFGRNLIANIYSKDPEVIKLIAQVLPLVGIVQNFDSLNAVAGSCLRGQGMQSLGSIVNLMAYYLFGIPLALILSWFFDMKLYGLWIGIGSAMLLIGLVEAYYVLFPDWDKIMTYAEILKETEDDEVDSDEYLTDSDDPDENTALLGA", "length": 695 }, "evidence": [ { "id": "F1SB21", "url": "https://omabrowser.org/oma/group/F1SB21/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3V050-1", "protein_name": "Multidrug and toxin extrusion protein 2", "gene_name": "Slc47a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPAEDSLGATIQPPELVRVPRGRSLRILLGLRGALSPDVRREAAALVALAGPVFLAQLMIFLISIVSSIFCGHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGSAWANTTSQFFLSALLFLYVWWKRIHIHTWGGWTRECFQEWSSYTRLAIPSMFMVCIEWWTFEIGTFLAGLVNVTELGAQAVIYELASVAYMVPFGFGVAASVRVGNALGAGNADQARCSCTTVLLCAGVCALLVGILLAALKDVVAYIFTNDKDIISLVSQVMPIFAPFHLFDALAGTCGGVLRGTGKQKIGAVLNTIGYYGFGFPIGVSLMFAAKLGIIGLWAGLIVCVSFQAFSYLIYILRTNWSRVAEQAQVRAGLKSTKELIPTPADLPILEREVMDGVILPDIIRPESQTGQLVVEENSQCAVPTVGEVLTGRQLVFYRGMALTVSVAVLIAGIVVRVFNDRG", "length": 573 }, "evidence": [ { "id": "F1SB21", "url": "https://omabrowser.org/oma/group/F1SB21/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "xenobiotic transmembrane transporter activity", "id": "GO:0042910", 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"reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STK32C", "url": "https://www.uniprot.org/uniprotkb/F1SDJ0", "locus": { "chromosome": "14", "start_pos": 140512451, "end_pos": 140591686, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010761", "url": "https://www.ensembl.org/id/ENSSSCG00000010761" } ] } } ], "crossref": [ { "id": "F1SDJ0", "url": "https://alphafold.ebi.ac.uk/entry/F1SDJ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010761", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010761", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05578", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05578", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100737116", "url": "https://www.ncbi.nlm.nih.gov/gene/100737116", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737116", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737116", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SDJ0", "url": "https://www.orthodb.org/?gene=F1SDJ0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24355", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24355", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24355:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24355:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003483625", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483625", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": "https://www.rhea-db.org/rhea/46608", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FGG6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGG6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDJ0", "url": "https://www.uniprot.org/uniprotkb/F1SDJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDJ0-1", "url": "https://www.uniprot.org/uniprotkb/F1SDJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSGAERRGSSAAAPPGSPPSGRARPAGHDAPPAPPPPPPPAAGQPRARDAGDARAQPRPLFPWSKWKKRMGSSMSAATARRPVFDDKEDVNLDHFQILRAIGKGSFGKVCIVQKRDTEKMYAMKYMSKQQCIERDEVRNVFRELQILQEIEHVFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVQFSEDTVRLYICEMALALDYLRGQHIIHRDVKPDNILLDEQGHAHLTDFNIATIIRDGERATALAGTKPYMAPEIFQSFVNGGTGYSFEVDWWSVGVMAYELLRGWRPYDIHSSNAVESLVQLFSTVSVQYVPTWSKETVALLRKLLTVNPQHRMSSLRDVQAAPALADVLWAELSEKKVEPGFVPNKGRLHCDPTFELEEMILESRPLHKKKKRLAKNRSRDSSRDSSQSENDYLQDCLDAIQQDFVVFNREKLKRSQDPSSEPPPAPEPGEAAELPADSEGALSALPTCGSICPSAGSS", "length": 490, "header": "tr|F1SDJ0-1|F1SDJ0_PIG Isoform 1 of Serine/threonine-protein kinase 32C OS=Sus scrofa OX=9823 GN=STK32C PE=1 SV=4 CANONICAL=F1SDJ0-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FGG6-1", "url": "https://www.uniprot.org/uniprotkb/F1SDJ0/entry#A0A8W4FGG6-1", "sequence": { "sequence": "MRSGAERRGSSAAAPPGSPPSGRARPAGHDAPPAPPPPPPPAAGQPRARDAGDARAQPRPLFPWSKWKKRMGSSMSAATARRPVFDDKEDVNLDHFQILRAIGKGSFGKVCIVQKRDTEKMYAMKYMSKQQCIERDEVRNVFRELQILQEIEHVFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVQFSEDTVRLYICEMALALDYLRGQHIIHRVAPSSLLTGHAHLTDFNIATIIRDGERATALAGTKPYMAPEIFQSFVNGGTGYSFEVDWWSVGVMAYELLRGWRPYDIHSSNAVESLVQLFSTVSVQYVPTWSKETVALLRKLLTVNPQHRMSSLRDVQAAPALADVLWAELSEKKVEPGFVPNKGRLHCDPTFELEEMILESRPLHKKKKRLAKNRSRDSSRDSSQSENDYLQDCLDAIQQDFVVFNREKLKRSQDPSSEPPPAPEPGEAAELPADSEGALSALPTCGSICPSAGSS", "length": 486, "header": "tr|A0A8W4FGG6-1|F1SDJ0_PIG Computationally mapped isoform of Serine/threonine-protein kinase 32C OS=Sus scrofa OX=9823 GN=STK32C PE=1 SV=1 CANONICAL=F1SDJ0-1" }, "locus": { "chromosome": "14", "start_pos": 140591487, "end_pos": 140512967, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101093.1", "url": 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"start_pos": 140591487, "end_pos": 140512967, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011773.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011773.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011471.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011471.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FGG6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGG6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100737116", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737116", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "F1SDJ0", "url": "https://www.uniprot.org/uniprotkb/F1SDJ0" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SDJ0", "url": "https://www.uniprot.org/uniprotkb/F1SDJ0" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SDJ0", "url": "https://www.uniprot.org/uniprotkb/F1SDJ0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F1SDJ0", "url": "https://www.uniprot.org/uniprotkb/F1SDJ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 408, "end_pos": 410, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDJ0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 490, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDJ0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDJ0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDJ0" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 96, "end_pos": 356, "start_aa": "Phe", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 408, "end_pos": 410 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SDK4-1", "uniprot_ac": "F1SDK4", "uniprot_id": "F1SDK4_PIG", "mass": { "chemical_mass": 80639.0, "monoisotopic_mass": 80639.0 }, "refseq": { "ac": "XP_005671630", "name": "receptor-type tyrosine-protein phosphatase epsilon isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671630" }, "gene_names": [ { "name": "PTPRE", "type": "recommended", "evidence": [ { "id": "F1SDK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDK4" } ] }, { "name": "PTPRE", "type": "synonym", "evidence": [ { "id": "XP_005671630", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671630" } ] } ], "protein_names": [ { "name": "Receptor-type tyrosine-protein phosphatase", "type": "recommended", "evidence": [ { "id": "F1SDK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDK4/entry#names_and_taxonomy" } ] }, { "name": "3.1.3.48", "type": "synonym", "evidence": [ { "id": "F1SDK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDK4/entry#names_and_taxonomy" } ] }, { "name": "receptor-type tyrosine-protein phosphatase epsilon isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005671630", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671630" } ] } ], "function": [ { "annotation": "Isoform 1 and isoform 2 act as a negative regulator of FceRI-mediated signal transduction leading to cytokine production and degranulation, most likely by acting at the level of SYK to affect downstream events such as phosphorylation of SLP76 and LAT and mobilization of Ca(2+).", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R5J4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5J4#function" }, { "database": "UniProtKB", "id": "ARBA00053907", "url": "https://www.uniprot.org/uniprotkb/ARBA00053907#function" }, { "database": "UniProtKB", "id": "A0A5G2R524", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R524#function" }, { "database": "UniProtKB", "id": "A0A8W4FKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKQ5#function" }, { "database": "UniProtKB", "id": "F1SDK4", "url": "https://www.uniprot.org/uniprotkb/F1SDK4#function" }, { "database": "UniProtKB", "id": "A0A287A7G5", "url": "https://www.uniprot.org/uniprotkb/A0A287A7G5#function" }, { "database": "UniProtKB", "id": "A0A287AMI7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMI7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDK4", "url": "https://www.uniprot.org/uniprotkb/F1SDK4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PTPRE", "url": "https://www.uniprot.org/uniprotkb/F1SDK4", "locus": { "chromosome": "14", "start_pos": 137264238, "end_pos": 137101555, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010755", "url": "https://www.ensembl.org/id/ENSSSCG00000010755" } ] } } ], "crossref": [ { "id": "F1SDK4", "url": "https://alphafold.ebi.ac.uk/entry/F1SDK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010755", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010755", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14620", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14620", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14622", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14622", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155079", "url": "https://www.ncbi.nlm.nih.gov/gene/100155079", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000242", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000242", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000387", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000387", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003595", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003595", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016336", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016336", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050348", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050348", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155079", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155079", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AMI7", "url": "https://www.orthodb.org/?gene=A0A287AMI7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SDK4", "url": "https://www.orthodb.org/?gene=F1SDK4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19134", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19134", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19134:SF499", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19134:SF499", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00102", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00102", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005671630", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671630", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "10684", "url": "https://www.rhea-db.org/rhea/10684", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A7G5", "url": "https://www.uniprot.org/uniprotkb/A0A287A7G5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A7G5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7G5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMI7", "url": "https://www.uniprot.org/uniprotkb/A0A287AMI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMI7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R524", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R524", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R524-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R524-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5J4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5J4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDK4", "url": "https://www.uniprot.org/uniprotkb/F1SDK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDK4-1", "url": "https://www.uniprot.org/uniprotkb/F1SDK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPFCPLLLAGVSVPLAKAFKANETTTPPSHQNSTTAGPPDPGAPQPLLAWLLLPLLLFLLFLLLAAYYFRFRKQRKAVVSANDKKMPNGILEEQEQQRVMLLSRSPSGPKKYFPIPVGHLEEEIRIRSADDCKRFREEFNSLPSGHIQGTFELANKEENREKNRYPNILPNDHSRVILSHVDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKAATIVMLTNLKERKEEKCYQYWPDQGCWTYGNIRVSVEDCVVLVDYTIRKFCIQTQLPDGCKAPRLVCQLHFTSWPDFGVPFTPIGMLKFLKKVRTLTPAHAGPTVVHCSAGVGRTGTFIVIDAMMDMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGDTELDVSSLEKHLQTLHGAATHFDKVGLEEEFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVEDFWRMIWEWKCHAIVMLTEVQEREQDKCYQYWPTEGAVTHGDITIELKSDTLSEAISVRDFLVTFNQPLARQEEQTRLVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQDFIDIFSDYANFK", "length": 701, "header": "tr|F1SDK4-1|F1SDK4_PIG Isoform 1 of Receptor-type tyrosine-protein phosphatase OS=Sus scrofa OX=9823 GN=PTPRE PE=1 SV=3 CANONICAL=F1SDK4-1" }, "isoforms": [ { "isoform_ac": "A0A287A7G5-1", "url": "https://www.uniprot.org/uniprotkb/F1SDK4/entry#A0A287A7G5-1", "sequence": { "sequence": "MLWSPWSPSVHSCWPVLACPWPRRLRPTRPPHRRATRTLRPQSLPSGHIQGTFELANKEENREKNRYPNILPNDHSRVILSHVDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKAATIVMLTNLKERKEEKCYQYWPDQGCWTYGNIRVSVEDCVVLVDYTIRKFCIQTQLPDGCKAPRLVCQLHFTSWPDFGVPFTPIGMLKFLKKVRTLTPAHAGPTVVHCSAGVGRTGTFIVIDAMMDMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGDTELDVSSLEKHLQTLHGAATHFDKVGLEEEFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVEDFWRMIWEWKCHAIVMLTEVQEREQDKCYQYWPTEGAVTHGDITIELKSDTLSEAISVRDFLVTFNQPLARQEEQTRLVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQDFIDIFSDYANFK", "length": 602, "header": "tr|A0A287A7G5-1|F1SDK4_PIG Computationally mapped isoform of Receptor-type tyrosine-protein phosphatase OS=Sus scrofa OX=9823 GN=PTPRE PE=1 SV=2 CANONICAL=F1SDK4-1" }, "locus": { "chromosome": "14", "start_pos": 137261397, "end_pos": 137185033, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063056.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063056.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039923.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039923.2" } ] } }, { "isoform_ac": "A0A287AMI7-1", "url": "https://www.uniprot.org/uniprotkb/F1SDK4/entry#A0A287AMI7-1", "sequence": { "sequence": "MSSRNSFSRLTWFRKQRKAVVSANDKKMPNGILEEQEQQRVMLLSRSPSGPKKYFPIPVGHLEEEIRIRSADDCKRFREEFNSLPSGHIQGTFELANKEENREKNRYPNILPNDHSRVILSHVDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKAATIVMLTNLKERKEEKCYQYWPDQGCWTYGNIRVSVEDCVVLVDYTIRKFCIQTQLPDGCKAPRLVCQLHFTSWPDFGVPFTPIGMLKFLKKVRTLTPAHAGPTVVHCSAGVGRTGTFIVIDAMMDMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGDTELDVSSLEKHLQTLHGAATHFDKVGLEEEFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVEDFWRMIWEWKCHAIVMLTEVQEREQDKCYQYWPTEGAVTHGDITIELKSDTLSEAISVRDFLVTFNQPLARQEEQTRLVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQDFIDIFSDYANFK", "length": 642, "header": "tr|A0A287AMI7-1|F1SDK4_PIG Computationally mapped isoform of Receptor-type tyrosine-protein phosphatase OS=Sus scrofa OX=9823 GN=PTPRE PE=1 SV=1 CANONICAL=F1SDK4-1" }, "locus": { "chromosome": "14", "start_pos": 137261397, "end_pos": 137225382, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051338.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051338.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045124.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045124.1" } ] } }, { "isoform_ac": "A0A5G2R524-1", "url": "https://www.uniprot.org/uniprotkb/F1SDK4/entry#A0A5G2R524-1", "sequence": { "sequence": "MRSRRGGGGGGIGATGPAPPRVAMEPFCPLLLAGVSVPLAKAFKANETTTPPSHQNSTTAGPPDPGAPQPLLAWLLLPLLLFLLFLLLAAYYFRFRKQRKAVVSANDKKMPNGILEEQEQQRVMLLSRSPSGPKKYFPIPVGHLEEEIRIRSADDCKRFREEFNSLPSGHIQGTFELANKEENREKNRYPNILPNDHSRVILSHVDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKAATIVMLTNLKERKEEKCYQYWPDQGCWTYGNIRVSVEDCVVLVDYTIRKFCIQTQLPDGCKAPRLVCQLHFTSWPDFGVPFTPIGMLKFLKKVRTLTPAHAGPTVVHCSAGVGRTGTFIVIDAMMDMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGDTELDVSSLEKHLQTLHGAATHFDKVGLEEEFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVEDFWRMIWEWKCHAIVMLTEVQEREQDKCYQYWPTEGAVTHGDITIELKSDTLSEAISVRDFLVTFNQPLARQEEQTRLVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLVRNRFQRSREFSWPNLLYVSWKALKYVAGGRRGGQVSQKKN", "length": 741, "header": "tr|A0A5G2R524-1|F1SDK4_PIG Computationally mapped isoform of Receptor-type tyrosine-protein phosphatase OS=Sus scrofa OX=9823 GN=PTPRE PE=1 SV=1 CANONICAL=F1SDK4-1" }, "locus": { "chromosome": "14", "start_pos": 137258778, "end_pos": 137101591, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078050.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078050.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065674.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065674.1" } ] } }, { "isoform_ac": "A0A5G2R5J4-1", "url": "https://www.uniprot.org/uniprotkb/F1SDK4/entry#A0A5G2R5J4-1", "sequence": { "sequence": "VWSWPGDSGGACPASSRVAMEPFCPLLLAGVSVPLAKAFKANETTTPPSHQNSTTAGPPDPGAPQPLLAWLLLPLLLFLLFLLLAAYYFRFRKQRKAVVSANDKKMPNGILEEQEQQRVMLLSRSPSGPKKYFPIPVGHLEEEIRIRSADDCKRFREEFNSLPSGHIQGTFELANKEENREKNRYPNILPNDHSRVILSHVDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKAATIVMLTNLKERKEEKCYQYWPDQGCWTYGNIRVSVEDCVVLVDYTIRKFCIQTQLPDGCKAPRLVCQLHFTSWPDFGVPFTPIGMLKFLKKVRTLTPAHAGPTVVHCSAGVGRTGTFIVIDAMMDMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGDTELDVSSLEKHLQTLHGAATHFDKVGLEEEFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVEDFWRMIWEWKCHAIVMLTEVQEREQDKCYQYWPTEGAVTHGDITIELKSDTLSEAISVRDFLVTFNQPLARQEEQTRLVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQDFIDIFSDYANFK", "length": 720, "header": "tr|A0A5G2R5J4-1|F1SDK4_PIG Computationally mapped isoform of Receptor-type tyrosine-protein phosphatase OS=Sus scrofa OX=9823 GN=PTPRE PE=1 SV=2 CANONICAL=F1SDK4-1" }, "locus": { "chromosome": "14", "start_pos": 137261397, "end_pos": 137216995, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084273.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084273.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065855.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065855.2" } ] } }, { "isoform_ac": "A0A8W4FKQ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SDK4/entry#A0A8W4FKQ5-1", "sequence": { "sequence": "MRSRRGGGGGGIGATGPAPPRVAMEPFCPLLLAGVSVPLAKAFKANETTTPPSHQNSTTAGPPDPGAPQPLLAWLLLPLLLFLLFLLLAAYYFRFRKQRKAVVSANDKKMPNGILEEQEQQRVMLLSRSPSGPKKYFPIPVGHLEEEIRIRSADDCKRFREEFNSLPSGHIQGTFELANKEENREKNRYPNILPNDHSRVILSHVDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKAATIVMLTNLKERKEEKCYQYWPDQGCWTYGNIRVSVEDCVVLVDYTIRKFCIQTQLPDGCKAPRLVCQLHFTSWPDFGVPFTPIGMLKFLKKVRTLTPAHAGPTVVHCSAGVGRTGTFIVIDAMMDMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGDTELDVSSLEKHLQTLHGAATHFDKVGLEEEFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVEDFWRMIWEWKCHAIVMLTEVQEREQDKCYQYWPTEGAVTHGDITIELKSDTLSEAISVRDFLVTFNQPLARQEEQTRLVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQDFIDIFSDYANFK", "length": 724, "header": "tr|A0A8W4FKQ5-1|F1SDK4_PIG Computationally mapped isoform of Receptor-type tyrosine-protein phosphatase OS=Sus scrofa OX=9823 GN=PTPRE PE=1 SV=1 CANONICAL=F1SDK4-1" }, "locus": { "chromosome": "14", "start_pos": 137261397, "end_pos": 137101591, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102370.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102370.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079914.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079914.1" } ] } }, { "isoform_ac": "F1SDK4-1", "url": "https://www.uniprot.org/uniprotkb/F1SDK4/entry#F1SDK4-1", "sequence": { "sequence": "MEPFCPLLLAGVSVPLAKAFKANETTTPPSHQNSTTAGPPDPGAPQPLLAWLLLPLLLFLLFLLLAAYYFRFRKQRKAVVSANDKKMPNGILEEQEQQRVMLLSRSPSGPKKYFPIPVGHLEEEIRIRSADDCKRFREEFNSLPSGHIQGTFELANKEENREKNRYPNILPNDHSRVILSHVDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKAATIVMLTNLKERKEEKCYQYWPDQGCWTYGNIRVSVEDCVVLVDYTIRKFCIQTQLPDGCKAPRLVCQLHFTSWPDFGVPFTPIGMLKFLKKVRTLTPAHAGPTVVHCSAGVGRTGTFIVIDAMMDMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGDTELDVSSLEKHLQTLHGAATHFDKVGLEEEFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVEDFWRMIWEWKCHAIVMLTEVQEREQDKCYQYWPTEGAVTHGDITIELKSDTLSEAISVRDFLVTFNQPLARQEEQTRLVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQDFIDIFSDYANFK", "length": 701, "header": "tr|F1SDK4-1|F1SDK4_PIG Isoform 1 of Receptor-type tyrosine-protein phosphatase OS=Sus scrofa OX=9823 GN=PTPRE PE=1 SV=3 CANONICAL=F1SDK4-1" }, "locus": { "chromosome": "14", "start_pos": 137261397, "end_pos": 137217608, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011767.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011767.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011465.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011465.3" } ] } } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 697, "end_pos": 697, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "F1SDK4", "url": "https://www.uniprot.org/uniprotkb/F1SDK4" } ], "site_lbl": "Tyr697" } ], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FKQ5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKQ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155079", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155079", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SDK4", "url": "https://www.uniprot.org/uniprotkb/F1SDK4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SDK4", "url": "https://www.uniprot.org/uniprotkb/F1SDK4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SDK4", "url": "https://www.uniprot.org/uniprotkb/F1SDK4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein tyrosine phosphatase activity", "id": "GO:0004725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004725", "evidence": [ { "database": "UniProtKB", "id": "F1SDK4", "url": "https://www.uniprot.org/uniprotkb/F1SDK4" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SDK4", "url": "https://www.uniprot.org/uniprotkb/F1SDK4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of insulin receptor signaling pathway", "id": "GO:0046627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046627", "evidence": [ { "database": "UniProtKB", "id": "F1SDK4", "url": "https://www.uniprot.org/uniprotkb/F1SDK4" } ], "pmid": "" }, { "name": "regulation of mast cell activation", "id": "GO:0033003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033003", "evidence": [ { "database": "UniProtKB", "id": "F1SDK4", "url": "https://www.uniprot.org/uniprotkb/F1SDK4" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SDK4", "url": "https://www.uniprot.org/uniprotkb/F1SDK4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" }, { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" }, { "start_pos": 484, "end_pos": 486, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "10684", "name": "", "equation": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "10684", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/10684" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDK4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 701, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDK4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDK4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDK4" }, { "id": "PS50056", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50056" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tyrosine specific protein phosphatases", "eco_id": "ECO_0000259", "start_pos": 315, "end_pos": 386, "start_aa": "Leu", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SDK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDK4" }, { "id": "PS50055", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50055" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tyrosine-protein phosphatase", "eco_id": "ECO_0000259", "start_pos": 136, "end_pos": 395, "start_aa": "Phe", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", 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"https://alphafold.ebi.ac.uk/entry/F1SES5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006995", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006995", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01903", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01903", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR016699", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016699", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR28583", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28583", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28583:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28583:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02275", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02275", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15508", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15508", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9840310", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840310", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "20856", "url": "https://www.rhea-db.org/rhea/20856", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B5G7", "url": "https://www.uniprot.org/uniprotkb/A0A287B5G7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5G7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5G7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRS6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRS6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVG2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVG2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R312", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R312", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R312-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R312-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLX4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLX4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SES5-1", "url": "https://www.uniprot.org/uniprotkb/F1SES5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKISISRTQGKKEIHDDFNDSILSFTEALKKNSNWMSKRFNQKSGTQRVNFPVGLLRKSKHFVFQVQAQGTLNTTLLPRSPWLCQPKAFHELGENAELLNTCSEGRFALLPEHFTCCIQAAVLAAGTMQGRSRLTLVLLSVAIACAVAQYVPPWTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKLPGLLGNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSIITEDKGVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSLTLNERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFILGGNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLNQTTQENISFATLYDVLSTKPVLNKLTVFTTLIDVIKGQFETYLRDCPDPCIGW", "length": 489, "header": "tr|F1SES5-1|F1SES5_PIG Isoform 1 of ceramidase OS=Sus scrofa OX=9823 GN=ASAH1 PE=1 SV=4 CANONICAL=F1SES5-1" }, "isoforms": [ { "isoform_ac": "A0A287B5G7-1", "url": "https://www.uniprot.org/uniprotkb/F1SES5/entry#A0A287B5G7-1", "sequence": { "sequence": "MGHALLCLPSHIDLLRIQVQAQGTLNTTLLPRSPWLCQPKAFHELGENAELLNTCSEGRFALLPEHFTCFAAVLAAGTMQGRSRLTLVLLSVAIACAVAQYVPPWTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKLPGLLGNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSIITEDKGGHLLHGRNMDFGLLLGWNINNNTWVVTEQLKPLTVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSLTLNERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFILGGNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLNQTTQENISFATLYDVLSTKPVLNKLTVFTTLIDVIKGQFETYLRDCPDPCIGW", "length": 473, "header": "tr|A0A287B5G7-1|F1SES5_PIG Computationally mapped isoform of ceramidase OS=Sus scrofa OX=9823 GN=ASAH1 PE=1 SV=3 CANONICAL=F1SES5-1" }, "locus": { "chromosome": "17", "start_pos": 5758399, "end_pos": 5713097, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064630.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064630.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051692.3", "url": "https://www.ensembl.org/id/ENSSSCP00000051692.3" } ] } }, { "isoform_ac": "A0A5G2QRS6-1", "url": "https://www.uniprot.org/uniprotkb/F1SES5/entry#A0A5G2QRS6-1", "sequence": { "sequence": "MGHALLCLPSHIDLLRIQVQAQGTLNTTLLPRSPWLCQPKAFHELGENAELLNTCSEGRFALLPEHFTCFAAVLAAGTMQGRSRLTLVLLSVAIACAVAQYVPPWTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKAPAPGLLGNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSIITEDKGGHLLHGRNMDFGLLLGWNINNNTWVVTEQLKPLTVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSLTLNERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFILGGNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLNQTTQENISFATLYDVLSTKPVLNKLTVFTTLIDVIKGQFETYLRDCPDPCIGW", "length": 444, "header": "tr|A0A5G2QRS6-1|F1SES5_PIG Computationally mapped isoform of ceramidase OS=Sus scrofa OX=9823 GN=ASAH1 PE=1 SV=2 CANONICAL=F1SES5-1" }, "locus": { "chromosome": "17", "start_pos": 5758399, "end_pos": 5713097, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074398.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074398.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060957.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060957.2" } ] } }, { "isoform_ac": "A0A5G2QVG2-1", "url": "https://www.uniprot.org/uniprotkb/F1SES5/entry#A0A5G2QVG2-1", "sequence": { "sequence": "MGHALLCLPSHIDLLRIQVQAQGTLNTTLLPRSPWLCQPKAFHELGENAELLNTCSEGRFALLPEHFTCFAAVLAAGTMQGRSRLTLVLLSVAIACAVAQYVPPWTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKLPGLLGNFPGPFEEEMKGIAAVTGIPLGHLLHGRNMDFGLLLGWNINNNTWVVTEQLKPLTVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSLTLNERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFILGGNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLNQTTQENISFATLYDVLSTKPVLNKLTVFTTLIDVIKGQFETYLRDCPDPCIGW", "length": 448, "header": "tr|A0A5G2QVG2-1|F1SES5_PIG Computationally mapped isoform of ceramidase OS=Sus scrofa OX=9823 GN=ASAH1 PE=1 SV=2 CANONICAL=F1SES5-1" }, "locus": { "chromosome": "17", "start_pos": 5758399, "end_pos": 5713097, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079288.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079288.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068838.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068838.2" } ] } }, { "isoform_ac": "A0A5G2R312-1", "url": "https://www.uniprot.org/uniprotkb/F1SES5/entry#A0A5G2R312-1", "sequence": { "sequence": "MGHALLCLPSHIDLLRIQVQAQGTLNTTLLPRSPWLCQPKAFHELGENAELLNTCSEGRFALLPEHFTCFAAVLAAGTMQGRSRLTLVLLSVAIACAVAQYVPPWTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKLPGLLGNFPGPFEEEMKGIAAVTGIPLGILEWVLGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFILGGNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLNQTTQENISFATLYDVLSTKPVLNKLTVFTTLIDVIKGQFETYLRDCPDPCIGW", "length": 366, "header": "tr|A0A5G2R312-1|F1SES5_PIG Computationally mapped isoform of ceramidase OS=Sus scrofa OX=9823 GN=ASAH1 PE=1 SV=2 CANONICAL=F1SES5-1" }, "locus": { "chromosome": "17", "start_pos": 5758399, "end_pos": 5713097, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086781.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086781.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068587.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068587.2" } ] } }, { "isoform_ac": "A0A8W4FLX4-1", "url": "https://www.uniprot.org/uniprotkb/F1SES5/entry#A0A8W4FLX4-1", "sequence": { "sequence": "MGHALLCLPSHIDLLRIQVQAQGTLNTTLLPRSPWLCQPKAFHELGENAELLNTCSEGRFALLPEHFTCFAAVLAAGTMQGRSRLTLVLLSVAIACAVAQYVPPWTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKLPGLLGNFPGPFEEEMKGIAAVTGIPLGKAHLTQLKPLTVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSLTLNERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFILGGNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLNQTTQENISFATLYDVLSTKPVLNKLTVFTTLIDVIKGQFETYLRDCPDPCIGW", "length": 426, "header": "tr|A0A8W4FLX4-1|F1SES5_PIG Computationally mapped isoform of ceramidase OS=Sus scrofa OX=9823 GN=ASAH1 PE=1 SV=1 CANONICAL=F1SES5-1" }, "locus": { "chromosome": "17", "start_pos": 5758399, "end_pos": 5713097, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100008.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100008.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079303.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079303.1" } ] } }, { "isoform_ac": "F1SES5-1", "url": "https://www.uniprot.org/uniprotkb/F1SES5/entry#F1SES5-1", "sequence": { "sequence": "MGKISISRTQGKKEIHDDFNDSILSFTEALKKNSNWMSKRFNQKSGTQRVNFPVGLLRKSKHFVFQVQAQGTLNTTLLPRSPWLCQPKAFHELGENAELLNTCSEGRFALLPEHFTCCIQAAVLAAGTMQGRSRLTLVLLSVAIACAVAQYVPPWTEDCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNSLKNMVNAFVPSGKILEIVDQKLPGLLGNFPGPFEEEMKGIAAVTGIPLGEIISYNIFYEFFTICTSIITEDKGVNLNFQRNNKTVFKAASFAGYVGVMTGFKPGLFSLTLNERFSSNGGYIGILEWVLGKKDAKWIGFILRSVLENSTSYEEAKNILTKTKLLAPAYFILGGNVSGEGCVITRDRKESLDVYELDPKQGRWYVVQTNYDRWKNTFFLDDRRTPAKICLNQTTQENISFATLYDVLSTKPVLNKLTVFTTLIDVIKGQFETYLRDCPDPCIGW", "length": 489, "header": "tr|F1SES5-1|F1SES5_PIG Isoform 1 of ceramidase OS=Sus scrofa OX=9823 GN=ASAH1 PE=1 SV=4 CANONICAL=F1SES5-1" }, "locus": { "chromosome": "17", "start_pos": 5750784, "end_pos": 5713097, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007660.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007660.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007453.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007453.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R312", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R312" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-9840310", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840310", "resource": "Reactome", "description": "Glycosphingolipid catabolism" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "fatty acid amide hydrolase activity", "id": "GO:0017064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017064", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" }, { "name": "N-acylsphingosine amidohydrolase activity", "id": "GO:0017040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017040", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "fatty acid metabolic process", "id": "GO:0006631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006631", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" }, { "name": "sphingolipid metabolic process", "id": "GO:0006665", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006665", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" }, { "name": "ceramide biosynthetic process", "id": "GO:0046513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046513", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" }, { "name": "sphingosine biosynthetic process", "id": "GO:0046512", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046512", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" }, { "name": "ceramide catabolic process", "id": "GO:0046514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046514", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" }, { "name": "keratinocyte differentiation", "id": "GO:0030216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030216", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" }, { "name": "cellular response to tumor necrosis factor", "id": "GO:0071356", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071356", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" }, { "name": "regulation of steroid biosynthetic process", "id": "GO:0050810", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050810", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" }, { "name": "regulation of programmed necrotic cell death", "id": "GO:0062098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0062098", "evidence": [ { "database": "UniProtKB", "id": "F1SES5", "url": "https://www.uniprot.org/uniprotkb/F1SES5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 20, "end_pos": 22, "annotation": "n_glycosylation_sequon" }, { "start_pos": 289, "end_pos": 291, "annotation": "n_glycosylation_sequon" }, { "start_pos": 353, "end_pos": 355, "annotation": "n_glycosylation_sequon" }, { "start_pos": 380, "end_pos": 382, "annotation": "n_glycosylation_sequon" }, { "start_pos": 436, "end_pos": 438, "annotation": "n_glycosylation_sequon" }, { "start_pos": 442, "end_pos": 444, "annotation": "n_glycosylation_sequon" }, { "start_pos": 74, "end_pos": 76, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "20856", "name": "", "equation": "an N-acylsphing-4-enine + H2O = sphing-4-enine + a fatty acid", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "20856", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/20856" } ] }, { "id": "R-SSC-1606602", "name": "ASAH1 hydrolyzes ceramide", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "lysosomal lumen", "input_participant_list": [], "output_participant_list": [ "R-ALL-1606588", "R-ALL-1861779" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1606602", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1606602" } ] }, { "id": "R-SSC-6798745", "name": "Exocytosis of tertiary granule lumen proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "extracellular region, tertiary granule lumen", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6798745", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798745" } ] }, { "id": "R-SSC-6800434", "name": "Exocytosis of ficolin-rich granule lumen proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. 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"evidence": [ { "id": "F1S8R2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8R2" } ] } ], "protein_names": [ { "name": "Pyrroline-5-carboxylate reductase", "type": "recommended", "evidence": [ { "id": "F1S8R2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8R2/entry#names_and_taxonomy" } ] }, { "name": "1.5.1.2", "type": "synonym", "evidence": [ { "id": "F1S8R2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8R2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Oxidoreductase that catalyzes the last step in proline biosynthesis, which corresponds to the reduction of pyrroline-5-carboxylate to L-proline using NAD(P)H. At physiologic concentrations, has higher specific activity in the presence of NADH. Involved in cellular response to oxidative stress. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+).", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T6E4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T6E4#function" }, { "database": "UniProtKB", "id": "ARBA00049938", "url": "https://www.uniprot.org/uniprotkb/ARBA00049938#function" }, { "database": "UniProtKB", "id": "F1S8R2", "url": "https://www.uniprot.org/uniprotkb/F1S8R2#function" }, { "database": "UniProtKB", "id": "A0A8W4FQH6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQH6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S8R2", "url": "https://www.uniprot.org/uniprotkb/F1S8R2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PYCR2", "url": "https://www.uniprot.org/uniprotkb/F1S8R2", "locus": { "chromosome": "10", "start_pos": 13838085, "end_pos": 13845894, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010855", "url": "https://www.ensembl.org/id/ENSSSCG00000010855" } ] } } ], "crossref": [ { "id": "F1S8R2", "url": "https://alphafold.ebi.ac.uk/entry/F1S8R2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010855", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010855", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008927", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008927", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028939", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053790", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053790", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11645", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11645", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11645:SF61", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11645:SF61", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03807", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03807", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14748", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14748", 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"categories": [ "Protein" ] }, { "id": "F1S8R2", "url": "https://www.uniprot.org/uniprotkb/F1S8R2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8R2-1", "url": "https://www.uniprot.org/uniprotkb/F1S8R2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVGFIGAGQLACALARGFTAAGILSAHKIIASSPEMDLPTVAALRKMGVNLTRSNKETVRHSDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKVPISGLASLVPLLPQKLQAFQPAPKVIRCMTNTPVVVREGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAFMALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPGQLKDNVCSPGGATIHALHFLESGGFRSLLINAVEASCIRTRELQSMADQEKVPAAALKKTLLDRVKLESPTVSTLTPSSSGKLLTRSPAPGGKKD", "length": 335, "header": "tr|F1S8R2-1|F1S8R2_PIG Isoform 1 of Pyrroline-5-carboxylate reductase OS=Sus scrofa OX=9823 GN=PYCR2 PE=3 SV=4 CANONICAL=F1S8R2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1T6E4-1", "url": "https://www.uniprot.org/uniprotkb/F1S8R2/entry#A0A4X1T6E4-1", "sequence": { "sequence": "MSVGFIGAGQLACALARGFTAAGILSAHKIIASSPEMDLPTVAALRKMGVNLTRSNKETVRHSDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKAFMALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPGQLKDNVCSPGGATIHALHFLESGGFRSLLINAVEASCIRTRELQSMADQEKVPAAALKKTLLDRVKLESPTVSTLTPSSSGKLLTRSPAPGGKKD", "length": 246, "header": "tr|A0A4X1T6E4-1|F1S8R2_PIG Computationally mapped isoform of Pyrroline-5-carboxylate reductase OS=Sus scrofa OX=9823 GN=PYCR2 PE=3 SV=1 CANONICAL=F1S8R2-1" }, "locus": { "chromosome": "10", "start_pos": 13845719, "end_pos": 13842246, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085777.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085777.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065170.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065170.1" } ] } }, { "isoform_ac": "A0A8W4FQH6-1", "url": "https://www.uniprot.org/uniprotkb/F1S8R2/entry#A0A8W4FQH6-1", "sequence": { "sequence": "MSVGFIGAGQLACALARGFTAAGILSAHKIIASSPEMDLPTVAALRKMGVNLTRSNKETVRHSDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLQAFQPAPKVIRCMTNTPVVVREGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYGAAKMLLDSEQHPGQLKDNVCSPGGATIHALHFLESGGFRSLLINAVEASCIRTRELQSMADQEKVPAAALKKTLLDRVKLESPTVSTLTPSSSGKLLTRSPAPGGKKD", "length": 289, "header": "tr|A0A8W4FQH6-1|F1S8R2_PIG Computationally mapped isoform of Pyrroline-5-carboxylate reductase OS=Sus scrofa OX=9823 GN=PYCR2 PE=3 SV=1 CANONICAL=F1S8R2-1" }, "locus": { "chromosome": "10", "start_pos": 13845719, "end_pos": 13842246, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098089.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098089.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080639.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080639.1" } ] } }, { "isoform_ac": "F1S8R2-1", "url": "https://www.uniprot.org/uniprotkb/F1S8R2/entry#F1S8R2-1", "sequence": { "sequence": "MSVGFIGAGQLACALARGFTAAGILSAHKIIASSPEMDLPTVAALRKMGVNLTRSNKETVRHSDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKVPISGLASLVPLLPQKLQAFQPAPKVIRCMTNTPVVVREGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAFMALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPGQLKDNVCSPGGATIHALHFLESGGFRSLLINAVEASCIRTRELQSMADQEKVPAAALKKTLLDRVKLESPTVSTLTPSSSGKLLTRSPAPGGKKD", "length": 335, "header": "tr|F1S8R2-1|F1S8R2_PIG Isoform 1 of Pyrroline-5-carboxylate reductase OS=Sus scrofa OX=9823 GN=PYCR2 PE=3 SV=4 CANONICAL=F1S8R2-1" }, "locus": { "chromosome": "10", "start_pos": 13845719, "end_pos": 13842246, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011877.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011877.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011573.5", "url": "https://www.ensembl.org/id/ENSSSCP00000011573.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FQH6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQH6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8964539", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8964539", "resource": "Reactome", "description": "Glutamate and glutamine metabolism" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "pyrroline-5-carboxylate reductase activity", "id": "GO:0004735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004735", "evidence": [ { "database": "UniProtKB", "id": "F1S8R2", "url": "https://www.uniprot.org/uniprotkb/F1S8R2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1S8R2", "url": "https://www.uniprot.org/uniprotkb/F1S8R2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "L-proline biosynthetic process", "id": "GO:0055129", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055129", "evidence": [ { "database": "UniProtKB", "id": "F1S8R2", "url": "https://www.uniprot.org/uniprotkb/F1S8R2" } ], "pmid": "" }, { "name": "cellular response to oxidative stress", "id": "GO:0034599", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034599", "evidence": [ { "database": "UniProtKB", "id": "F1S8R2", "url": "https://www.uniprot.org/uniprotkb/F1S8R2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "14105", "name": "", "equation": "L-proline + NAD(+) = (S)-1-pyrroline-5-carboxylate + NADH + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "14105", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/14105" } ] }, { "id": "14109", "name": "", "equation": "L-proline + NADP(+) = (S)-1-pyrroline-5-carboxylate + NADPH + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "14109", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/14109" } ] }, { "id": "R-SSC-6783939", "name": "PYCR2 decamer reduces (S)-1-pyrroline-5-carboxylate to L-Pro", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6783939", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6783939" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S8R2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 335, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S8R2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S8R2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S8R2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8R2" }, { "id": "PF03807", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03807" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pyrroline-5-carboxylate reductase catalytic N-terminal", "eco_id": "ECO_0000259", "start_pos": 3, "end_pos": 98, "start_aa": "Val", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1S8R2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8R2" }, { "id": "PF14748", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14748" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pyrroline-5-carboxylate reductase dimerisation", "eco_id": "ECO_0000259", "start_pos": 179, "end_pos": 283, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 51, "end_pos": 53 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S8Q0-1", "uniprot_ac": "F1S8Q0", "uniprot_id": "F1S8Q0_PIG", "mass": { "chemical_mass": 48588.0, "monoisotopic_mass": 48588.0 }, "refseq": { "ac": "XP_003128873", "name": "TNFAIP3-interacting protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128873" }, "gene_names": [ { "name": "TNIP2", "type": "recommended", "evidence": [ { "id": "F1S8Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0" } ] }, { "name": "TNIP2", "type": "synonym", "evidence": [ { "id": "XP_003128873", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128873" } ] } ], "protein_names": [ { "name": "TNFAIP3-interacting protein 2", "type": "recommended", "evidence": [ { "id": "F1S8Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0/entry#names_and_taxonomy" } ] }, { "name": "A20-binding inhibitor of NF-kappa-B activation 2", "type": "synonym", "evidence": [ { "id": "F1S8Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0/entry#names_and_taxonomy" } ] }, { "name": "TNFAIP3-interacting protein 2", "type": "synonym", "evidence": [ { "id": "XP_003128873", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128873" } ] } ], "function": [ { "annotation": "Inhibits NF-kappa-B activation by blocking the interaction of RIPK1 with its downstream effector NEMO/IKBKG. Forms a ternary complex with NFKB1 and MAP3K8 but appears to function upstream of MAP3K8 in the TLR4 signaling pathway that regulates MAP3K8 activation. Involved in activation of the MEK/ERK signaling pathway during innate immune response; this function seems to be stimulus- and cell type specific. Required for stability of MAP3K8. Involved in regulation of apoptosis in endothelial cells; promotes TEK agonist-stimulated endothelial survival. May act as transcriptional coactivator when translocated to the nucleus. Enhances CHUK-mediated NF-kappa-B activation involving NF-kappa-B p50-p65 and p50-c-Rel complexes.", "evidence": [ { "database": "UniProtKB", "id": "F1S8Q0", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0#function" }, { "database": "UniProtKB", "id": "ARBA00055998", "url": "https://www.uniprot.org/uniprotkb/ARBA00055998#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S8Q0", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TNIP2", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0", "locus": { "chromosome": "8", "start_pos": 1533429, "end_pos": 1554683, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008691", "url": "https://www.ensembl.org/id/ENSSSCG00000008691" } ] } } ], "crossref": [ { "id": "F1S8Q0", "url": "https://alphafold.ebi.ac.uk/entry/F1S8Q0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008691", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008691", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518977", "url": "https://www.ncbi.nlm.nih.gov/gene/100518977", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034735", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034735", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518977", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518977", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "INDCAEA", "url": "https://omabrowser.org/oma/group/INDCAEA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S8Q0", "url": "https://www.orthodb.org/?gene=F1S8Q0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31882", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31882", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31882:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31882:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12180", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12180", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5684264", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5684264", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689896", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689896", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003128873", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128873", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R901", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R901", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R901-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R901-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8Q0", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8Q0-1", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSGGAGSGGPEGAPRAAAALCGLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAAPSLVDALLEQVARFREQLRQQDGGAAEAALRQEIERLSEQLEEKERETQQLMNQPEHEREKEVALLRRSVAEKERARAASDILCRSLADETHQLRRTLAATAHMCQHLAKCLDERQRAQGDVGERGPETECASGDASVQAVVEKLQEENRLLKQKVTHVEDLNARWQRYDASRDEYVRGLHAQLRGLQAPLEPESPSSPERLQKEIARLNRQLEEKVDACAEAKQELASARRARDAALERVQMLEQQILAYKDDFSSERADRERAQTRIHELEEQVASLRHQVSWRQDSREPGSCRVRTGGNTPAYLEADASELAVPGGRRFGTGSPWLELPAEGKRPGATARGQGDLQCPHCLRYFSDEQGEELFRHVAECCQ", "length": 435, "header": "tr|F1S8Q0-1|F1S8Q0_PIG Isoform 1 of TNFAIP3-interacting protein 2 OS=Sus scrofa OX=9823 GN=TNIP2 PE=4 SV=2 CANONICAL=F1S8Q0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R901-1", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0/entry#A0A5G2R901-1", "sequence": { "sequence": "MSSGGAGSGGPEGAPRAAAALCGLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAAPSLVDALLEQVARFREQLRQQDGGAAEAALRQEIERLSEQLEEKERETQQLMNQPEHEREKEVALLRRSVAEKERARAASDILCRSLADETHQLRRTLAATAHMCQHLAKCLDERQRAQGDVGERGPETECASGDASVQAVVEKLQEENRLLKQKVTHILAYKDDFSSERADRERAQTRIHELEEQVASLRHQVSWRQDSREPGSCRVRTGGNTPAYLEADASELAVPGGRRFGTGSPWLELPAEGKRPGATARGQGDLQCPHCLRYFSDEQGEELFRHVAECCQ", "length": 346, "header": "tr|A0A5G2R901-1|F1S8Q0_PIG Computationally mapped isoform of TNFAIP3-interacting protein 2 OS=Sus scrofa OX=9823 GN=TNIP2 PE=4 SV=1 CANONICAL=F1S8Q0-1" }, "locus": { "chromosome": "8", "start_pos": 1554570, "end_pos": 1533834, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074864.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074864.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070598.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070598.1" } ] } }, { "isoform_ac": "F1S8Q0-1", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0/entry#F1S8Q0-1", "sequence": { "sequence": "MSSGGAGSGGPEGAPRAAAALCGLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAAPSLVDALLEQVARFREQLRQQDGGAAEAALRQEIERLSEQLEEKERETQQLMNQPEHEREKEVALLRRSVAEKERARAASDILCRSLADETHQLRRTLAATAHMCQHLAKCLDERQRAQGDVGERGPETECASGDASVQAVVEKLQEENRLLKQKVTHVEDLNARWQRYDASRDEYVRGLHAQLRGLQAPLEPESPSSPERLQKEIARLNRQLEEKVDACAEAKQELASARRARDAALERVQMLEQQILAYKDDFSSERADRERAQTRIHELEEQVASLRHQVSWRQDSREPGSCRVRTGGNTPAYLEADASELAVPGGRRFGTGSPWLELPAEGKRPGATARGQGDLQCPHCLRYFSDEQGEELFRHVAECCQ", "length": 435, "header": "tr|F1S8Q0-1|F1S8Q0_PIG Isoform 1 of TNFAIP3-interacting protein 2 OS=Sus scrofa OX=9823 GN=TNIP2 PE=4 SV=2 CANONICAL=F1S8Q0-1" }, "locus": { "chromosome": "8", "start_pos": 1554570, "end_pos": 1533834, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009509.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009509.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009265.2", "url": "https://www.ensembl.org/id/ENSSSCP00000009265.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R901", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R901" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518977", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518977", "resource": "KEGG Pathway" }, { "id": "R-SSC-5684264", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5684264", "resource": "Reactome", "description": "MAP3K8 (TPL2)-dependent MAPK1/3 activation" }, { "id": "R-SSC-5689896", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689896", "resource": "Reactome", "description": "Ovarian tumor domain proteases" } ], "orthologs": [ { "uniprot_canonical_ac": "G3V7R6-1", "protein_name": "TNFAIP3-interacting protein 2", "gene_name": "Tnip2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSGDARSGRQDEAPSAASALCGLYHEAGQQLQLLKDQLAARDALIASLRTRLAALEGHTAPSLVDALLDQVERFREQLRRQEDGASESQLRQEVERLTECLEEKEREMQQLMSQPQHEQEKEVVLLRRSVVEKEKARAASDILCRSLTDETHQLRRTLAATAHMCQHLAKCLDERQRVQGDAGEKSPAELEHTSRDTSGQSVIKKLQEENRLLKQKVIHVEDLNAKWQRYDASRDEYVKGLHAQLKRRQVPLEPELMKKEISRLNRQLEEKISDCAEAKQELAAVKMARDTALERVQMLEQQILAYKDDFKSERADRERAHSRIQELEEKVMSLMYQVSQRQDSREPGPCRIHTGSKTAKYLEMDALEHVAPGGWRPESRSQQMEPSAEGGHVCTTQRGQGDLQCPHCLRCFSDEQGEAFLRHLSECCQ", "length": 430 }, "evidence": [ { "id": "F1S8Q0", "url": "https://omabrowser.org/oma/group/F1S8Q0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8NFZ5-1", "protein_name": "TNFAIP3-interacting protein 2", "gene_name": "TNIP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSRDPGSGGWEEAPRAAAALCTLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAAPSLVDALLEQVARFREQLRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHEREKEVVLLRRSMAEGERARAASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQRNVGERSPDQSEHTDGHTSVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRGLHAQLRGLQIPHEPELMRKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLEQQILAYKDDFMSERADRERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAKYLAADALELMVPGGWRPGTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEELLRHVAECCQ", "length": 429 }, "evidence": [ { "id": "F1S8Q0", "url": "https://omabrowser.org/oma/group/F1S8Q0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99JG7-1", "protein_name": "TNFAIP3-interacting protein 2", "gene_name": "Tnip2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSGDPRSGRQDGAPRAAAALCGLYHEAGQQLQRLKDQLAARDALIASLRTRLAALEGHTAPSLVDALLDQVERFREQLRRQEEGASETQLRQEVERLTERLEEKEREMQQLMSQPQHEQEKEVVLLRRSVAEKEKARAASDVLCRSLADETHQLRRTLAATAHMCQHLAKCLDERQCAQGDAGEKSPAELEQTSSDASGQSVIKKLQEENRLLKQKVTHVEDLNAKWQRYDASRDEYVKGLHAQLKRRQVPLEPELMKKEISRLNRQLEEKISDCAEANQELTAMRMSRDTALERVQMLEQQILAYKDDFKSERADRERAHSRIQELEEKIMSLMYQVSQRQDSREPGPCRIHTGNKTAKYLEMDALEHVTPGGWRPESRSQQMEPSAEGGHVCTAQRGQGDLQCPHCLRCFSDEQGEAFLRHLSECCQ", "length": 430 }, "evidence": [ { "id": "F1S8Q0", "url": "https://omabrowser.org/oma/group/F1S8Q0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S8Q0", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S8Q0", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S8Q0", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 16, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1S8Q0", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0" } ], "pmid": "" }, { "name": "cellular response to lipopolysaccharide", "id": "GO:0071222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071222", "evidence": [ { "database": "UniProtKB", "id": "F1S8Q0", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0" } ], "pmid": "" }, { "name": "positive regulation of canonical NF-kappaB signal transduction", "id": "GO:0043123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043123", "evidence": [ { "database": "UniProtKB", "id": "F1S8Q0", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0" } ], "pmid": "" }, { "name": "toll-like receptor 2 signaling pathway", "id": "GO:0034134", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034134", "evidence": [ { "database": "UniProtKB", "id": "F1S8Q0", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0" } ], "pmid": "" }, { "name": "toll-like receptor 3 signaling pathway", "id": "GO:0034138", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034138", "evidence": [ { "database": "UniProtKB", "id": "F1S8Q0", "url": "https://www.uniprot.org/uniprotkb/F1S8Q0" } ], "pmid": "" }, { "name": "positive regulation of macrophage activation", "id": "GO:0043032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043032", "evidence": [ { "database": "UniProtKB", "id": "F1S8Q0", "url": 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"melanocyte differentiation", "id": "GO:0030318", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030318", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQ64", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQ64" } ], "pmid": "" }, { "name": "minus-end-directed organelle transport along microtubule", "id": "GO:0072385", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072385", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQ64", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQ64" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "late endosome membrane", "id": "GO:0031902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031902", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQ64", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQ64" } ], "pmid": "" }, { "name": "melanosome", "id": "GO:0042470", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042470", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQ64", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQ64" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQ64", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQ64" } ], "pmid": "" }, { "name": "melanosome membrane", "id": "GO:0033162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033162", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQ64", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQ64" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphatidylinositol binding", "id": "GO:0035091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035091", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQ64", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQ64" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S887-1", "uniprot_ac": "F1S887", "uniprot_id": "F1S887_PIG", "mass": { "chemical_mass": 55513.0, "monoisotopic_mass": 55513.0 }, "refseq": {}, "gene_names": [ { "name": "SIRPA", "type": "recommended", "evidence": [ { "id": "F1S887", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S887" } ] } ], "protein_names": [ { "name": "Signal regulatory protein alpha", "type": "synonym", "evidence": [ { "id": "F1S887", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S887/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S887", "url": "https://www.uniprot.org/uniprotkb/F1S887" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SIRPA", "url": "https://www.uniprot.org/uniprotkb/F1S887", "locus": {} } ], "crossref": [ { "id": "F1S887", "url": "https://alphafold.ebi.ac.uk/entry/F1S887", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027665", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027665", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000028461", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028461", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05772", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05772", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16085", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16085", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003597", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003597", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051755", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051755", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19971", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19971", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07654", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07654", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-202733", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202733", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-391160", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-391160", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AKY3", "url": "https://www.uniprot.org/uniprotkb/A0A287AKY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAN0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5K1VU96", "url": "https://www.uniprot.org/uniprotkb/A0A5K1VU96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5K1VU96-1", "url": "https://www.uniprot.org/uniprotkb/A0A5K1VU96-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S887", "url": "https://www.uniprot.org/uniprotkb/F1S887", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S887-1", "url": "https://www.uniprot.org/uniprotkb/F1S887-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GP73", "url": "https://www.uniprot.org/uniprotkb/K7GP73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GP73-1", "url": "https://www.uniprot.org/uniprotkb/K7GP73-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "M9MMN6", "url": "https://www.uniprot.org/uniprotkb/M9MMN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "M9MMN6-1", "url": "https://www.uniprot.org/uniprotkb/M9MMN6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPARPAPGRLGPLLCLLLALLSAWTGAAGEEGLQVLQPERSVSVAAGETATLPCTATSLIPIGPFKWFKGTGPARELIYDFKGDPRGHSPRVTNASDATRRDNKDFSIRIRNITPADAGTYYCVKFRRESPADVEFRSGPGTQLTVSAKPSRPVVSGPAARATPEQTVRFTCKSHGFSPRNISLKWFKNGNELPASQTSVEPEGNVSYSISSTTEVLLAPGDVHSQVICEVAHVTLQGGPPLRGTANLSETIRVPPTLEVTQQPPTGSQVNVTCLVKKFYPQRLQLTWLENRNVSRTETASTLMENKDGTFNRTSWLLVNSSAHREAVLLTCQVEHDGQPAVTKNYTLEVVTHQKEQGADAVLDNSDNWKSIFITVGVVCALLVALLVAALYLLRIRQKKAKGSTSSTRLHEPEKNAREITQVQSLDNNDITYADLNLPKGKKPAPKAEEPNDHTEYASIQARPHPGSEANLTYADLDMVHLNRGPKHPAPKPEPSCSEYASVQVRRK", "length": 509, "header": "tr|F1S887-1|F1S887_PIG Isoform 1 of Signal regulatory protein alpha OS=Sus scrofa OX=9823 GN=SIRPA PE=1 SV=5 CANONICAL=F1S887-1" }, "isoforms": [ { "isoform_ac": "A0A287AKY3-1", "url": "https://www.uniprot.org/uniprotkb/F1S887/entry#A0A287AKY3-1", "sequence": { "sequence": "MEPARPAPGRLGPLLCLLLALLSAWTGAAGEEGLQVLQPERSVSVAAGETATLPCTATSLIPIGPFKWFKGTGPARELIYDFKGDPRGHSPRVTNASDATRRDNKDFSIRIRNITPADAGTYYCVKFRRESPADVEFRSGPGTQLTVSDNSDNWKSIFITVGVVCALLVALLVAALYLLRIRQKKAKGSTSSTRLHEPEKNAREITQIQDNNDITYADLNLPKGKKPAPKAEEPNDHTEYASIQARPHPGSEANLTYADLDMVHLNRGPKHPAPKPEPSCSEYASVQVRRK", "length": 291, "header": "tr|A0A287AKY3-1|F1S887_PIG Computationally mapped isoform of Signal regulatory protein alpha OS=Sus scrofa OX=9823 GN=SIRPA PE=1 SV=1 CANONICAL=F1S887-1" }, "locus": { "chromosome": "17", "start_pos": 33610114, "end_pos": 33568610, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049590.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049590.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044687.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044687.1" } ] } }, { "isoform_ac": "A0A5G2RAN0-1", "url": "https://www.uniprot.org/uniprotkb/F1S887/entry#A0A5G2RAN0-1", "sequence": { "sequence": "ITAVCFPPGAAGEEGLQVLQPERSVSVAAGETATLPCTATSLIPIGPFKWFKGTGPARELIYDFKGDPRGHSPRVTNASDATRRDNKDFSIRIRNITPADAGTYYCVKFRRESPADVEFRSGPGTQLTVSAKPSRPVVSGPAARATPEQTVRFTCKSHGFSPRNISLKWFKNGNELPASQTSVEPEGNVSYSISSTTEVLLAPGDVHSQVICEVAHVTLQGGPPLRGTANLSETIRVPPTLEVTQQPPTGSQVNVTCLVKKFYPQRLQLTWLENRNVSRTETASTLMENKDGTFNRTSWLLVNSSAHREAVLLTCQVEHDGQPAVTKNYTLEVVTHQKEQGADAVLDNSDNWKSIFITVGVVCALLVALLVAALYLLRIRQKKAKGSTSSTRLHEPEKNAREITQIQDNNDITYADLNLPKGKKPAPKAEEPNDHTEYASIQARPHPGSEANLTYADLDMVHLNRGPKHPAPKPEPSCSEYASVQVRRK", "length": 489, "header": "tr|A0A5G2RAN0-1|F1S887_PIG Computationally mapped isoform of Signal regulatory protein alpha OS=Sus scrofa OX=9823 GN=SIRPA PE=1 SV=1 CANONICAL=F1S887-1" }, "locus": { "chromosome": "17", "start_pos": 33591319, "end_pos": 33568610, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082876.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082876.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063962.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063962.2" } ] } }, { "isoform_ac": "A0A5K1VU96-1", "url": "https://www.uniprot.org/uniprotkb/F1S887/entry#A0A5K1VU96-1", "sequence": { "sequence": "KDGEVGSRGFEAGPVVGQPLKKEGAAGEEGLQVLQPERSVSVAAGETATLPCTATSLIPIGPFKWFKGTGPARELIYDFKGDPRGHSPRVTNASDATRRDNKDFSIRIRNITPADAGTYYCVKFRRESPADVEFRSGPGTQLTVSGENLTLRRNPSRRQFSVSTACPGWGRRPEAKPSRPVVSGPAARATPEQTVRFTCKSHGFSPRNISLKWFKNGNELPASQTSVEPEGNVSYSISSTTEVLLAPGDVHSQVICEVAHVTLQGGPPLRGTANLSETIRVPPTLEVTQQPPTGSQVNVTCLVKKFYPQRLQLTWLENRNVSRTETASTLMENKDGTFNRTSWLLVNSSAHREAVLLTCQVEHDGQPAVTKNYTLEVVTHQKEQGADAVLDNSDNWKSIFITVGVVCALLVALLVAALYLLRIRQKKGELHEPEKNAREITQIQDNNDITYADLNLPKGKKPAPKAEEPNDHTEYASIQARPHPGSEANLTYADLDMVHLNRGPKHPAPKPEPSCSEYASVQVRRK", "length": 526, "header": "tr|A0A5K1VU96-1|F1S887_PIG Computationally mapped isoform of Signal regulatory protein alpha OS=Sus scrofa OX=9823 GN=SIRPA PE=1 SV=2 CANONICAL=F1S887-1" }, "locus": { "chromosome": "17", "start_pos": 33607027, "end_pos": 33568610, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027106.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027106.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021099.4", "url": "https://www.ensembl.org/id/ENSSSCP00000021099.4" } ] } }, { "isoform_ac": "F1S887-1", "url": "https://www.uniprot.org/uniprotkb/F1S887/entry#F1S887-1", "sequence": { "sequence": "MEPARPAPGRLGPLLCLLLALLSAWTGAAGEEGLQVLQPERSVSVAAGETATLPCTATSLIPIGPFKWFKGTGPARELIYDFKGDPRGHSPRVTNASDATRRDNKDFSIRIRNITPADAGTYYCVKFRRESPADVEFRSGPGTQLTVSAKPSRPVVSGPAARATPEQTVRFTCKSHGFSPRNISLKWFKNGNELPASQTSVEPEGNVSYSISSTTEVLLAPGDVHSQVICEVAHVTLQGGPPLRGTANLSETIRVPPTLEVTQQPPTGSQVNVTCLVKKFYPQRLQLTWLENRNVSRTETASTLMENKDGTFNRTSWLLVNSSAHREAVLLTCQVEHDGQPAVTKNYTLEVVTHQKEQGADAVLDNSDNWKSIFITVGVVCALLVALLVAALYLLRIRQKKAKGSTSSTRLHEPEKNAREITQVQSLDNNDITYADLNLPKGKKPAPKAEEPNDHTEYASIQARPHPGSEANLTYADLDMVHLNRGPKHPAPKPEPSCSEYASVQVRRK", "length": 509, "header": "tr|F1S887-1|F1S887_PIG Isoform 1 of Signal regulatory protein alpha OS=Sus scrofa OX=9823 GN=SIRPA PE=1 SV=5 CANONICAL=F1S887-1" }, "locus": { "chromosome": "17", "start_pos": 33610114, "end_pos": 33568610, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007856.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007856.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007645.5", "url": "https://www.ensembl.org/id/ENSSSCP00000007645.5" } ] } }, { "isoform_ac": "K7GP73-1", "url": "https://www.uniprot.org/uniprotkb/F1S887/entry#K7GP73-1", "sequence": { "sequence": "GPDLGNNLTKDGEVGSRGFEAGPVVGQPLKKEGAAGEEGLQVLQPERSVSVAAGETATLPCTATSLIPIGPFKWFKGTGPARELIYDFKGDPRGHSPRVTNASDATRRDNKDFSIRIRNITPADAGTYYCVKFRRESPADVEFRSGPGTQLTVSAKPSRPVVSGPAARATPEQTVRFTCKSHGFSPRNISLKWFKNGNELPASQTSVEPEGNVSYSISSTTEVLLAPGDVHSQVICEVAHVTLQGGPPLRGTANLSETIRVPPTLEVTQQPPTGSQVNVTCLVKKFYPQRLQLTWLENRNVSRTETASTLMENKDGTFNRTSWLLVNSSAHREAVLLTCQVEHDGQPAVTKNYTLEVVTHQKEQGADAVLDNSDNWKSIFITVGVVCALLVALLVAALYLLRIRQKKAKGSTSSTRLHEPEKNAREITQIQDNNDITYADLNLPKGKKPAPKAEEPNDHTEYASIQARPHPGSEANLTYADLDMVHLNRGPKHPAPKPEPSCSEYASVQVRRK", "length": 513, "header": "tr|K7GP73-1|F1S887_PIG Computationally mapped isoform of Signal regulatory protein alpha OS=Sus scrofa OX=9823 GN=SIRPA PE=1 SV=4 CANONICAL=F1S887-1" }, "locus": { "chromosome": "17", "start_pos": 33607054, "end_pos": 33568610, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036670.4", "url": "https://www.ensembl.org/id/ENSSSCT00000036670.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029685.4", "url": 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"database": "Ensembl Transcript", "id": "ENSSSCT00000029239.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029239.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020543.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020543.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "K7GP73", "url": "https://www.uniprot.org/uniprotkb/K7GP73" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-202733", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202733", "resource": "Reactome", "description": "Cell surface interactions at the vascular wall" }, { "id": "R-SSC-391160", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-391160", "resource": "Reactome", "description": "Signal regulatory protein family interactions" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", 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"https://www.uniprot.org/uniprotkb/I3LAS2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDWGTELWDQFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQLLQEVNDFAGQRELVAENLSVQVCLELAKYSQEMKQERKMHFQEGRRAQQQLESGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATHLGAGYGLLSEAELQVVPIIAKCLEGMKVAAEAVDAKKDSQVLIELHKSGFARPGDVEFEDFSQPMNRVPSDSSLGTPSDGRPELRGSSRSRAKRWPFGKKNKTVVTEDFSHLPPEQQRKRLQQQLEERNRELQKEIDQREALKKMKDVYEKTPQMGDPASLEPRITETLNNIERLKLEVQKYEAWLAEAESRVLSNRGDTLGRHTRPPDPPASAPPDSSSSNNGSQDNKESSEEPPAEEGQDAPIYTEFDEDFEEEPASPIGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKQGGEGYVPTSYLRVTLN", "length": 546, "header": "tr|F1SCM9-1|F1SCM9_PIG Isoform 1 of Thyroid hormone receptor interactor 10 OS=Sus scrofa OX=9823 GN=TRIP10 PE=1 SV=2 CANONICAL=F1SCM9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2REI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SCM9/entry#A0A5G2REI4-1", "sequence": { "sequence": "MDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQLLQEVNDFAGQRELVAENLSVQVCLELAKYSQEMKQERKMHFQEGRRAQQQLESGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATHLGAGYGLLSEAELQVVPIIAKCLEGMKVAAEAVDAKKDSQVLIELHKSGFARPGDVEFEDFSQPMNRVPSDSSLGTPSDGRPELRGSSRSRAKRWPFGKKNKPRPPPLSPLGGPLPSALPNGPPSPRSGLDPLAILSEISKSVKPRLASFRSLRGSRGTVVTEDFSHLPPEQQRKRLQQQLEERNRELQKEIDQREALKKMKDVYEKTPQMGDPASLEPRITETLNNIERLKLEGRGRPAWLTDGGSRVLSNRGDTLGRHTRPPDPPASAPPDSSSSNNGSQDNKESSEEPPAEEGQDAPIYTEFDEDFEEEPASPIGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKQGGEGYVPTSYLRVTLN", "length": 578, "header": "tr|A0A5G2REI4-1|F1SCM9_PIG Computationally mapped isoform of Thyroid hormone receptor interactor 10 OS=Sus scrofa OX=9823 GN=TRIP10 PE=1 SV=3 CANONICAL=F1SCM9-1" }, "locus": { "chromosome": "2", "start_pos": 72414784, "end_pos": 72406777, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068882.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068882.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069287.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069287.2" } ] } }, { "isoform_ac": "F1SCM9-1", "url": "https://www.uniprot.org/uniprotkb/F1SCM9/entry#F1SCM9-1", "sequence": { "sequence": "MDWGTELWDQFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQLLQEVNDFAGQRELVAENLSVQVCLELAKYSQEMKQERKMHFQEGRRAQQQLESGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATHLGAGYGLLSEAELQVVPIIAKCLEGMKVAAEAVDAKKDSQVLIELHKSGFARPGDVEFEDFSQPMNRVPSDSSLGTPSDGRPELRGSSRSRAKRWPFGKKNKTVVTEDFSHLPPEQQRKRLQQQLEERNRELQKEIDQREALKKMKDVYEKTPQMGDPASLEPRITETLNNIERLKLEVQKYEAWLAEAESRVLSNRGDTLGRHTRPPDPPASAPPDSSSSNNGSQDNKESSEEPPAEEGQDAPIYTEFDEDFEEEPASPIGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKQGGEGYVPTSYLRVTLN", "length": 546, "header": "tr|F1SCM9-1|F1SCM9_PIG Isoform 1 of Thyroid hormone receptor interactor 10 OS=Sus scrofa OX=9823 GN=TRIP10 PE=1 SV=2 CANONICAL=F1SCM9-1" }, "locus": { "chromosome": "2", "start_pos": 72416037, "end_pos": 72406777, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014804.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014804.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014403.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014403.3" } ] } }, { "isoform_ac": "I3LAS2-1", "url": "https://www.uniprot.org/uniprotkb/F1SCM9/entry#I3LAS2-1", "sequence": { "sequence": "MDWGTELWDQFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQLLQEVNDFAGQRELVAENLSVQVCLELAKYSQEMKQERKMHFQEGRRAQQQLESGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATHLGAGYGLLSEAELQVVPIIAKCLEGMKVAAEAVDAKKDSQVLIELHKSGFARPGDVEFEDFSQPMNRVPSDSSLGTPSDGRPELRGSSRSRAKRWPFGKKNKPRPPPLSPLGGPLPSALPNGPPSPRSGLDPLAILSEISKSVKPRLASFRSLRGSRGTVVTEDFSHLPPEQQRKRLQQQLEERNRELQKEIDQREALKKMKDVYEKTPQMGDPASLEPRITETLNNIERLKLEVQKYEAWLAEAESRVLSNRGDTLGRHTRPPDPPASAPPDSSSSNNGSQDNKESSEEPPAEEGQDAPIYTEFDEDFEEEPASPIGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKQGGEGYVPTSYLRVTLN", "length": 602, "header": "tr|I3LAS2-1|F1SCM9_PIG Computationally mapped isoform of Thyroid hormone receptor interactor 10 OS=Sus scrofa OX=9823 GN=TRIP10 PE=1 SV=3 CANONICAL=F1SCM9-1" }, "locus": { "chromosome": "2", "start_pos": 72416037, "end_pos": 72406777, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032173.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032173.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021140.3", "url": "https://www.ensembl.org/id/ENSSSCP00000021140.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 302, "start_aa": "Thr", "end_pos": 302, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr302", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LAS2", "url": "https://www.uniprot.org/uniprotkb/I3LAS2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520177", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520177", "resource": "KEGG Pathway" }, { "id": "R-SSC-8856828", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856828", "resource": "Reactome", "description": "Clathrin-mediated endocytosis" }, { "id": "R-SSC-9013406", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013406", "resource": "Reactome", "description": "RHOQ GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "P97531-1", "protein_name": "Cdc42-interacting protein 4", "gene_name": "Trip10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDWGTELWDQFEVLERHTQWGLDLLDKYVKFVKERVEVEQSYAKQLRSLVKKYLPKRPAKDDPEIKFSQQQSFVQLLQEVNDFAGQRELVAESLGIRVCLELAKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAHTAERLDQDINATKADVEKAKQQAHLRNHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELQVVPIIGKCLEGMKVAAESVDAKNDSKVLIELHKSGFARPGDLEFEDFSQVMNRVPSDSSLGTPDGRPELRAASSRSRAKRWPFGKKNKTVVTEDFSHLPPEQQRKRLQQQLEERNRELQKEEDQREALKKMKDVYEKTPQMGDPASLEPRIAETLGNIERLKLEVQKYEAWLAEAESRVLSNRGDSLSRHTRPPDPPTTAPPDSSSSSNNSGSQDNKESSEEPPSEEGQDTPIYTEFDEDFEEPASPIGQCVAIYHFEGSSEGTVSMSEGEDLSLMEEDKGDGWTRVRRKQGGEGYVPTSYLRVTLN", "length": 547 }, "evidence": [ { "id": "F1SCM9", "url": "https://omabrowser.org/oma/group/F1SCM9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q15642-1", "protein_name": "Cdc42-interacting protein 4", "gene_name": "TRIP10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDWGTELWDQFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVPIIAKCLEGMKVAANAVDPKNDSHVLIELHKSGFARPGDVEFEDFSQPMNRAPSDSSLGTPSDGRPELRGPGRSRTKRWPFGKKNKPRPPPLSPLGGPVPSALPNGPPSPRSGRDPLAILSEISKSVKPRLASFRSLRGSRGTVVTEDFSHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAESRVLSNRGDSLSRHARPPDPPASAPPDSSSNSASQDTKESSEEPPSEESQDTPIYTEFDEDFEEEPTSPIGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTLN", "length": 601 }, "evidence": [ { "id": "F1SCM9", "url": "https://omabrowser.org/oma/group/F1SCM9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5U3Q6-1", "protein_name": "Cdc42-interacting protein 4 homolog", "gene_name": "trip10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDWGTELWDQYDILDKHTQSGLDLVDKYMKFVKERTDIEQNYAKQLRNLTKKYSPKRGSKEEQECRFSNHQAFLDILNEMNDYAGQRELIAENMMINICVELNKYLQELKQERKMHLSEAKKSQQSLEAMYKQLDNSKKRFEREWREAEKAAQYADKTDQDLNATKADVEKAKQQAHLRTHIAEDCKNDYAAQLQKYNKGQSQFYFTDMPQIFNKLQDMDERRIKKMAQGYILFADTERHVMPIIGKCLEGMTRAGTNVNARNDSMVLIEQHKSGFERPGDLDFEDYSQGINRASSDSSLGTPKGPLELLGKNKNKTFRLFNKKSKFTPEKPVDTEGFTHLPPEQRRKRLQQKIDDMSKELQKEMDQSEALGKMKDVYEKNPQMGDPASLAPQIGQTAQNMDRLRGELNKYESWLAEAGGRGDSIRYSTHSINNNGAHNPNSHDGSCTLFSPGALSDETDPSQAIYTEFDDEFEEEELATPIGQCTALYNFPGSSEGTISMQEGEVLAVVEEDKGDGWTRVRRNNGDEGYIPTSYATITLNK", "length": 542 }, "evidence": [ { "id": "F1SCM9", "url": "https://omabrowser.org/oma/group/F1SCM9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8CJ53-1", "protein_name": "Cdc42-interacting protein 4", "gene_name": "Trip10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWGTELWDQFEVLERHTQWGLDLLDKYVKFVKERAEVEQAYAKQLRSLVKKYLPKRPTKDDPEVKFSQQQSFVQLLQEVNDFAGQRELVAESLGIRVCLELAKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAHTAERLDQDINATKADVEKAKQQAHLRNHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELQVVPIIGKCLEGMKVAAESVDAKNDSQVLIELHKSGFARPGDLEFEDFSQVINRVPSDSSLGTPDGRPELRAASSRSRAKRWPFGKKNKPRPPSLSLLGGHLPSTLSDGPSSPRSGRDPLAILSEISKSVKPRLASFRSFRGGRGTVATEDFSHLPPEQQRKRLQQQLEERNRELQKEEDQREALKKMKDVYEKTPQMGDPASLEPRIAETLGNIERLKLEVQKYEAWLAEAESRVLSNRGDSLSRHARPPDPPTTAPPDSSSSSTNSGSQDNKESSSEEPPSEGQDTPIYTEFDEDFEEPASPIGQCVAIYHFEGSSEGTVSMSEGEDLSLMEEDKGDGWTRVRRKQGAEGYVPTSYLRVTLN", "length": 603 }, "evidence": [ { "id": "F1SCM9", "url": "https://omabrowser.org/oma/group/F1SCM9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1SCM9", "url": "https://www.uniprot.org/uniprotkb/F1SCM9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SCM9", "url": "https://www.uniprot.org/uniprotkb/F1SCM9" } ], "pmid": "" }, { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "F1SCM9", "url": "https://www.uniprot.org/uniprotkb/F1SCM9" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "F1SCM9", "url": "https://www.uniprot.org/uniprotkb/F1SCM9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "F1SCM9", "url": "https://www.uniprot.org/uniprotkb/F1SCM9" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SCM9", "url": "https://www.uniprot.org/uniprotkb/F1SCM9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SCM9", "url": "https://www.uniprot.org/uniprotkb/F1SCM9" } ], "pmid": "" }, { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "F1SCM9", "url": "https://www.uniprot.org/uniprotkb/F1SCM9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 327, "end_pos": 329, "annotation": "n_glycosylation_sequon" }, { "start_pos": 449, "end_pos": 451, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCM9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 546, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCM9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCM9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCM9" }, { "id": "PS51741", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51741" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-BAR", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 264, "start_aa": "Met", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SCM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCM9" }, { "id": "PS51860", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51860" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "REM-1", "eco_id": "ECO_0000259", "start_pos": 337, "end_pos": 414, "start_aa": "His", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SCM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCM9" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 485, "end_pos": 546, "start_aa": "Ser", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 302 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 327, "end_pos": 329 }, { "start_pos": 449, "end_pos": 451 }, { "start_pos": 93, "end_pos": 95 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UUX3-1", "uniprot_ac": "A0A4X1UUX3", "uniprot_id": "A0A4X1UUX3_PIG", "mass": { "chemical_mass": 91328.0, "monoisotopic_mass": 91328.0 }, "refseq": { "ac": "XP_001927795", "name": "kinesin-associated protein 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927795" }, "gene_names": [ { "name": "KIFAP3", "type": "recommended", "evidence": [ { "id": "A0A4X1UUX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3" } ] }, { "name": "KIFAP3", "type": "synonym", "evidence": [ { "id": "XP_001927795", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927795" } ] } ], "protein_names": [ { "name": "Kinesin associated protein 3", "type": "synonym", "evidence": [ { "id": "A0A4X1UUX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3/entry#names_and_taxonomy" } ] }, { "name": "kinesin-associated protein 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_001927795", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927795" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UUX3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KIFAP3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3", "locus": { "chromosome": "4", "start_pos": 81108360, "end_pos": 80921682, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006282", "url": "https://www.ensembl.org/id/ENSSSCG00000006282" } ] } } ], "crossref": [ { "id": "A0A4X1UUX3", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1UUX3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006282", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006282", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157611", "url": "https://www.ncbi.nlm.nih.gov/gene/100157611", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008658", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008658", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157611", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157611", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MYELNIV", "url": "https://omabrowser.org/oma/group/MYELNIV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287B6W3", "url": "https://www.orthodb.org/?gene=A0A287B6W3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1UUL4", "url": "https://www.orthodb.org/?gene=A0A4X1UUL4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1UUX3", "url": "https://www.orthodb.org/?gene=A0A4X1UUX3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15605", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15605", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15605:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15605:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05804", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05804", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2132295", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620924", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620924", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6811434", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811434", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983189", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983189", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001927795", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927795", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A3N9", "url": "https://www.uniprot.org/uniprotkb/A0A287A3N9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A3N9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3N9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B6W3", "url": "https://www.uniprot.org/uniprotkb/A0A287B6W3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B6W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B6W3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UUL4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UUL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUL4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UUX3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UUX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAU4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAU4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBX2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPC8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPC8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RLV0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RLV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLV0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0MMW8", "url": "https://www.uniprot.org/uniprotkb/A0A8D0MMW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0MMW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0MMW8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FME9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FME9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FME9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FME9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQGEDARYLKRKVKGGNIDVHPSEKALIVHYEVEATILGEMGDPMLGERKECQKIIRLKSLNANTDITSLARKVVEECKLIHPSKLNEVEQLLYYLQNRRDSLPGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIELLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSQFHGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKAVDEDPENQILRKDYEKTFKKYQGLVVKQEQLLRVALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELISFCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGDLAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIKETQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQMDESEQYLYGDDRIEPYIHEGDILERPDLFYSSDGLVASEGAISPDFFNDYHLQNGDVVGQHSFPGSLGIDGFGQSVGILGRPATAYGFRPDEPYYYGYGSR", "length": 793, "header": "tr|A0A4X1UUX3-1|A0A4X1UUX3_PIG Isoform 1 of Kinesin associated protein 3 OS=Sus scrofa OX=9823 GN=KIFAP3 PE=1 SV=1 CANONICAL=A0A4X1UUX3-1" }, "isoforms": [ { "isoform_ac": "A0A287A3N9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3/entry#A0A287A3N9-1", "sequence": { "sequence": "MTALIVSGCGFFGPQWPFDDIPKAVTRKVKGGNIDVHPSEKALIVHYEVEATILGEMGDPMLGERKECQKIIRLKSLNANTDITSLARKVVEECKLIHPSKLNEVEQLLYYLQNRRDSLPGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIELLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSQFHGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKADILLWWHFTPLLLKDYEKTFKKYQGLVVKQEQLLRVALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQVCFLLSSLDFNMNLLCKIWKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGDLAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIKETQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQMDESEQYLYGDDRIEPYIHEGDILERPDLFYSSDGLVASEGAISPDFFNDYHLQNGDVVGQHSFPGSLGIDGFGQSVGILGRPATAYGFRPDEPYYYGYGSR", "length": 790, "header": "tr|A0A287A3N9-1|A0A4X1UUX3_PIG Computationally mapped isoform of Kinesin associated protein 3 OS=Sus scrofa OX=9823 GN=KIFAP3 PE=1 SV=3 CANONICAL=A0A4X1UUX3-1" }, "locus": { "chromosome": "4", "start_pos": 81104637, "end_pos": 80922130, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058180.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058180.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038366.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038366.3" } ] } }, { "isoform_ac": "A0A287B6W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3/entry#A0A287B6W3-1", "sequence": { "sequence": "MTALIVSGCGFFGPQWPFDDIPKAVTRKVKGGNIDVHPSEKALIVHYEVEATILGEMGDPMLGERKECQKIIRLKSLNANTDITSLARKVVEECKLIHPSKLNEVEQLLYYLQNRRDSLPGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIELLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSQFHGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKAVDEDPENQILRKDYEKTFKKYQGLVVKQEQLLRVALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELISFCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGDLAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIKETQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQMDESEQYLYGDDRIEPYIHEGDILERPDLFYSSDGLVASEGAISPDFFNDYHLQNGDVVGQHSFPGSLGIDGFGQSVGILGRPATAYGFRPDEPYYYGYGSR", "length": 809, "header": "tr|A0A287B6W3-1|A0A4X1UUX3_PIG Computationally mapped isoform of Kinesin associated protein 3 OS=Sus scrofa OX=9823 GN=KIFAP3 PE=1 SV=1 CANONICAL=A0A4X1UUX3-1" }, "locus": { "chromosome": "4", "start_pos": 81104637, "end_pos": 80922130, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041235.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041235.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052201.1", "url": "https://www.ensembl.org/id/ENSSSCP00000052201.1" } ] } }, { "isoform_ac": "A0A4X1UUL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3/entry#A0A4X1UUL4-1", "sequence": { "sequence": "MGDPMLGERKECQKIIRLKSLNANTDITSLARKVVEECKLIHPSKLNEVEQLLYYLQNRRDSLPGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIELLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSQFHGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKAVDEDPENQILRKDYEKTFKKYQGLVVKQEQLLRVALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELISFCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGDLAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIKETQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQMDESEQYLYGDDRIEPYIHEGDILERPDLFYSSDGLVASEGAISPDFFNDYHLQNGDVVGQHSFPGSLGIDGFGQSVGILGRPATAYGFRPDEPYYYGYGSR", "length": 753, "header": "tr|A0A4X1UUL4-1|A0A4X1UUL4_PIG Computationally mapped isoform of Kinesin associated protein 3 OS=Sus scrofa OX=9823 GN=KIFAP3 PE=1 SV=1 CANONICAL=A0A4X1UUX3-1" }, "locus": { "chromosome": "4", "start_pos": 81104637, "end_pos": 80958449, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046757.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046757.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059278.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059278.2" } ] } }, { "isoform_ac": "A0A4X1UUX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3/entry#A0A4X1UUX3-1", "sequence": { "sequence": "MQGEDARYLKRKVKGGNIDVHPSEKALIVHYEVEATILGEMGDPMLGERKECQKIIRLKSLNANTDITSLARKVVEECKLIHPSKLNEVEQLLYYLQNRRDSLPGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIELLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSQFHGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKAVDEDPENQILRKDYEKTFKKYQGLVVKQEQLLRVALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELISFCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGDLAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIKETQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQMDESEQYLYGDDRIEPYIHEGDILERPDLFYSSDGLVASEGAISPDFFNDYHLQNGDVVGQHSFPGSLGIDGFGQSVGILGRPATAYGFRPDEPYYYGYGSR", "length": 793, "header": "tr|A0A4X1UUX3-1|A0A4X1UUX3_PIG Isoform 1 of Kinesin associated protein 3 OS=Sus scrofa OX=9823 GN=KIFAP3 PE=1 SV=1 CANONICAL=A0A4X1UUX3-1" }, "locus": { "chromosome": "4", "start_pos": 81104637, "end_pos": 80932672, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047775.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047775.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056698.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056698.2" } ] } }, { "isoform_ac": "A0A5G2QAU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3/entry#A0A5G2QAU4-1", "sequence": { "sequence": "CIGEDQRSSGGSLPKVKGGNIDVHPSEKALIVHYEVEATILGEMGDPMLGERKECQKIIRLKSLNANTDITSLARKVVEECKLIHPSKLNEVEQLLYYLQNRRDSLPGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIELLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSQFHGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKADILLWWHFTPLLLKDYEKTFKKYQGLVVKQEQLLRVALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQVCFLLSSLDFNMNLLCKIWKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGDLAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIKETQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQMDESEQYLYGDDRIEPYIHEGDILERPDLFYSSDGLVASEGAISPDFFNDYHLQNGDVVGQHSFPGSLGIDGFGQSVGILGRPATAYGFRPDEPYYYGYGSR", "length": 777, "header": "tr|A0A5G2QAU4-1|A0A4X1UUX3_PIG Computationally mapped isoform of Kinesin associated protein 3 OS=Sus scrofa OX=9823 GN=KIFAP3 PE=1 SV=1 CANONICAL=A0A4X1UUX3-1" }, "locus": { "chromosome": "4", "start_pos": 81104637, "end_pos": 80957522, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085233.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085233.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061537.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061537.1" } ] } }, { "isoform_ac": "A0A5G2QBX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3/entry#A0A5G2QBX2-1", "sequence": { "sequence": "CIGEDQRSSGGSLPKVKGGNIDVHPSEKALIVHYEVEATILGEMGDPMLGERKECQKIIRLKSLNANTDITSLARKVVEECKLIHPSKLNEVEQLLYYLQNRRDSLPGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIELLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSQFHGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKADILLWWHFTPLLLKDYEKTFKKYQGLVVKQEQLLRVALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQVCFLLSSLDFNMNLLCKIWKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGDLAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNEAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQMDESEQYLYGDDRIEPYIHEGDILERPDLFYSSDGLVASEGAISPDFFNDYHLQNGDVVGQHSFPGSLGIDGFGQSVGILGRPATAYGFRPDEPYYYGYGSR", "length": 744, "header": "tr|A0A5G2QBX2-1|A0A4X1UUX3_PIG Computationally mapped isoform of Kinesin associated protein 3 OS=Sus scrofa OX=9823 GN=KIFAP3 PE=1 SV=2 CANONICAL=A0A4X1UUX3-1" }, "locus": { "chromosome": "4", "start_pos": 81104637, "end_pos": 80957522, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073808.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073808.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061013.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061013.2" } ] } }, { "isoform_ac": "A0A5G2QPC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3/entry#A0A5G2QPC8-1", "sequence": { "sequence": "MQGEDARYLKSIRLKSLNANTDITSLARKVVEECKLIHPSKLNEVEQLLYYLQNRRDSLPGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIELLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSQFHGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKAVDEDPENQILRKDYEKTFKKYQGLVVKQEQLLRVALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELISFCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGDLAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIKETQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQMDESEQYLYGDDRIEPYIHEGDILERPDLFYSSDGLVASEGAISPDFFNDYHLQNGDVVGQHSFPGSLGIDGFGQSVGILGRPATAYGFRPDEPYYYGYGSR", "length": 749, "header": "tr|A0A5G2QPC8-1|A0A4X1UUX3_PIG Computationally mapped isoform of Kinesin associated protein 3 OS=Sus scrofa OX=9823 GN=KIFAP3 PE=1 SV=1 CANONICAL=A0A4X1UUX3-1" }, "locus": { "chromosome": "4", "start_pos": 81104637, "end_pos": 80932672, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070056.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070056.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065921.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065921.1" } ] } }, { "isoform_ac": "A0A5G2RLV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3/entry#A0A5G2RLV0-1", "sequence": { "sequence": "MQGEDARYLKRKVKGGNIDVHPSEKALIVHYEVEATILGEMGDPMLGERKECQKIIRLKSLNANTDITSLARKVVEECKLIHPSKLNEVEQLLYYLQNRRDSLPGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIELLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSQFHGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKAVDEDPENQILRKDYEKTFKKYQGLVVKQEQLLRVALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELISFCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGDLAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIKETQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQMDESEQYLYGDDRIEPYIHEGDILERPDLFYSSDGLVASEGAISPDFFNDYHLQNGDVVGQHSFPGSFRKAKILSTSHFPFTIKELKNFFS", "length": 782, "header": "tr|A0A5G2RLV0-1|A0A4X1UUX3_PIG Computationally mapped isoform of Kinesin associated protein 3 OS=Sus scrofa OX=9823 GN=KIFAP3 PE=1 SV=1 CANONICAL=A0A4X1UUX3-1" }, "locus": { "chromosome": "4", "start_pos": 81074569, "end_pos": 80932672, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079021.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079021.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073399.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073399.1" } ] } }, { "isoform_ac": "A0A8D0MMW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3/entry#A0A8D0MMW8-1", "sequence": { "sequence": "MQGEDARYLKRKVKGGNIDVHPSEKALIVHYEVEATILGEMGDPMLGERKECQKIIRLKSLNANTDITSLARKVVEECKLIHPSKLNEVEQLLYYLQNRRDSLPGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIELLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSQFHGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKAVDEDPENQILRKDYEKTFKKYQGLVVKQEQLLRVALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELISFCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGDLAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIKETQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQMDESEQYLYGDDRIEPYIHEGDILERPDLFYSSDGLVASEGAISPDFFNDYHLQNGDVVGQHSFPGSTFHPRISKCFANMH", "length": 772, "header": "tr|A0A8D0MMW8-1|A0A4X1UUX3_PIG Computationally mapped isoform of Kinesin associated protein 3 OS=Sus scrofa OX=9823 GN=KIFAP3 PE=1 SV=1 CANONICAL=A0A4X1UUX3-1" }, "locus": { "chromosome": "4", "start_pos": 81100396, "end_pos": 80932672, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006882.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006882.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006694.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006694.4" } ] } }, { "isoform_ac": "A0A8W4FME9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3/entry#A0A8W4FME9-1", "sequence": { "sequence": "RRGSDPALLIRLKSLNANTDITSLARKVVEECKLIHPSKLNEVEQLLYYLQNRRDSLPGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIELLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSQFHGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKADILLWWHFTPLLLKDYEKTFKKYQGLVVKQEQLLRVALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQVCFLLSSLDFNMNLLCKIWKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGDLAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIKETQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQMDESEQYLYGDDRIEPYIHEGDILERPDLFYSSDGLVASEGAISPDFFNDYHLQNGDVVGQHSFPGSLGIDGFGQSVGILGRPATAYGFRPDEPYYYGYGSR", "length": 728, "header": "tr|A0A8W4FME9-1|A0A4X1UUX3_PIG Computationally mapped isoform of Kinesin associated protein 3 OS=Sus scrofa OX=9823 GN=KIFAP3 PE=1 SV=1 CANONICAL=A0A4X1UUX3-1" }, "locus": { "chromosome": "4", "start_pos": 81104637, "end_pos": 80963204, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092854.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092854.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080078.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080078.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAU4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAU4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157611", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157611", "resource": "KEGG Pathway" }, { "id": "R-SSC-2132295", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "resource": "Reactome", "description": "MHC class II antigen presentation" }, { "id": "R-SSC-5620924", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620924", "resource": "Reactome", "description": "Intraflagellar transport" }, { "id": "R-SSC-6811434", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811434", "resource": "Reactome", "description": "COPI-dependent Golgi-to-ER retrograde traffic" }, { "id": "R-SSC-983189", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983189", "resource": "Reactome", "description": "Kinesins" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K0P1-1", "protein_name": "Kinesin-associated protein 3", "gene_name": "Kifap3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTALISGGCGLFGPQWPFDDVPKAVTRKVKGGNIDVHPSEKALIVQYEVEATILGEMGDPMLGERKECQKIIRLKSLNANTDITSLARKVVEECKLIHPSKLNEVEQLLYYLQNRRDSLSGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIELLYEDLPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSHFHGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKAVDEDLENQTLRKDYDKTFKKYQGLVVKQEQLLRGGFCLCQKVTPLCMCMSVRHSVFVHPPLLFALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELISFCINLAANKRNVQLICEGNGLKMLMKRALKLKDPLLMKMIRNISQHDGPTKNLFIDYVGDLAAQISSDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPFLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIKETQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQMDESEQYLYGDDRIEPYIHEGDILERPDLFYNSDGLITSEGALSPDFFNDFHLQNGDVVGQHSFPGSLGMDGFGQPVGILGRPATAYGFRPDEPYYYSFGSR", "length": 838 }, "evidence": [ { "id": "A0A4X1UUX3", "url": "https://omabrowser.org/oma/group/A0A4X1UUX3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70188-1", "protein_name": "Kinesin-associated protein 3", "gene_name": "Kifap3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQGEDARYLKRKVKGGNIDVHPSEKALIVQYEVEATILGEMGDPMLGERKECQKIIRLKSLNANTDITSLARKVVEECKLIHPSKLSEVEQLLYYLQNRRDSLPGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIELLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSHFHGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKAVDEDLENQTLRKDYDKTFKKYQGLVVKQEQLLRVALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELISFCINLAANKRNVQLICEGNGLKMLMKRALKLKDPLLMKMIRNISQHDGPTKNLFIDYVGDLAAQISSDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPFLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIKETQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQLDESEQYLYGDDRIEPYIHEGDILERPDLFYNSDGLITSEGAISPDFFNDFHLQNGDVVGQHAFPGSLGMDGFGQPLGILGRPATAYGFRPDEPYYYSFGSR", "length": 793 }, "evidence": [ { "id": "A0A4X1UUX3", "url": "https://omabrowser.org/oma/group/A0A4X1UUX3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q92845-1", "protein_name": "Kinesin-associated protein 3", "gene_name": "KIFAP3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQGEDARYLKRKVKGGNIDVHPSEKALIVHYEVEATILGEMGDPMLGERKECQKIIRLKSLNANTDITSLARKVVEECKLIHPSKLNEVEQLLYYLQNRRDSLSGKEKKEKSSKPKDPPPFEGMEIDEVANINDMDEYIELLYEDIPDKVRGSALILQLARNPDNLEELLLNETALGALARVLREDWKQSVELATNIIYIFFCFSSFSQFHGLITHYKIGALCMNIIDHELKRHELWQEELSKKKKAVDEDPENQTLRKDYEKTFKKYQGLVVKQEQLLRVALYLLLNLAEDTRTELKMRNKNIVHMLVKALDRDNFELLILVVSFLKKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLLPKLTALLGNDNYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELISFCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGDLAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAAEDDLVLEVVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDVIIKETQAPAYLIDLMHDKNNEIRKVCDNTLDIIAEYDEEWAKKIQSEKFRWHNSQWLEMVESRQMDESEQYLYGDDRIEPYIHEGDILERPDLFYNSDGLIASEGAISPDFFNDYHLQNGDVVGQHSFPGSLGMDGFGQPVGILGRPATAYGFRPDEPYYYGYGS", "length": 792 }, "evidence": [ { "id": "A0A4X1UUX3", "url": "https://omabrowser.org/oma/group/A0A4X1UUX3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VZ07-1", "protein_name": "Kinesin associated protein 3, isoform G", "gene_name": "Kap3", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": 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], "pmid": "" }, { "name": "photoreceptor inner segment", "id": "GO:0001917", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001917", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UUX3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3" } ], "pmid": "" }, { "name": "axoneme", "id": "GO:0005930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005930", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UUX3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UUX3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3" } ], "pmid": "" }, { "name": "spindle microtubule", "id": "GO:0005876", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005876", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UUX3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUX3" } ], "pmid": "" }, { "name": 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"https://www.uniprot.org/uniprotkb/A0A5G2QGS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGS8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXA5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH09", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH09-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH09-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCZ9", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCZ9-1", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKRTFSTFETFLIFLLVMMTGVTVALLSLLFITSGTIENNKDSGFLTTQSPPATQGSSTPQGSTLTQGPADTQGPTATQASPTPSTPEPTLFQNFSGYHIGVGRADCTGQVADINLMGYGKTGQNAQGILTRLYSRAFIMAEPDGSNRVVFVSIEIGMVSQRLRLEVLNRLQSKYGSLYRRDNVILSGTHTHSGPAGYFQYTTFVLASEGFSNRTFEYMVNGIMKSIEIAHTNMKPGKIFINKGNVDGAQINRSPTSYLWNPLSERARYSSNTDKEMLLLKMVDLNGDDLGLISWFAIHPVSMNNSNHLVNSDNMGYASYLFEQEKNKGYLPGQGPYVAAFASSNLGDVSPNTLGPSCINTGESCDNANSTCPIGGPSMCIAMGPGQDMFNSTQIIGRIIYEKAKELYASASQEVTGPLASAHQWVNMTDVTVWLNSTHTGKTCKPALGYSFAAGTIDGFGSLNFTQGTTVGDPFWDSLRDQILGKPSEEIKECQKPKPILLHTGELSKPNPWHPDIVDVQIITLGFLAIAAVPGEFTTMSGRRFREAIQEEFATYGMPNMTVVVSGLCNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYIQLFKVLAKAIATGTVANLSTGPEPPFFKQLINTLIPNIVDRAPTGKHFGDVLQPVNPTYRMGEVVEVVFVGANPKNSAEILTHQTFLTVEKYEATSATWQIVHNDASWETRFYWHKGLLGYSNTTIQWHIPDSAQPGIYRIRYFGHSRKQDLLKAAVIVSFESTSSTFEVVTAL", "length": 778, "header": "tr|F1SCZ9-1|F1SCZ9_PIG Isoform 1 of Neutral ceramidase OS=Sus scrofa OX=9823 GN=ASAH2 PE=1 SV=3 CANONICAL=F1SCZ9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9X4-1", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9/entry#A0A5G2Q9X4-1", "sequence": { "sequence": "MYQAHKGEMAKRTFSTFETFLIFLLVMMTGVTVALLSLLFITSGTIENNKDSGFLTTQSPPATQGSSTPQGSTLTQGPADTQGPTATQASPTPSTPEPTLFQNFSGYHIGVGRADCTGQVADINLMGYGKTGQNAQGILTRLYSRAFIMAEPDGSNRVVFVSIEIGMVSQRLRLEVLNRLQSKYGSLYRRDNVILSGTHTHSGPAGYFQYTTFVLASEGFSNRTFEYMVNGIMKSIEIAHTNMKPGKIFINKGNVDGAQINRSPTSYLWNPLSERARYSSNTDKEMLLLKMVDLNGDDLGLISWFAIHPVSMNNSNHLVNSDNMGYASYLFEQEKNKGYLPGQGPYVAAFASSNLGDVSPNTLGPSCINTGESCDNANSTCPIGGPSMCIAMGPGQDMFNSTQIIGRIIYEKAKELYASASQEVTGPLASAHQWVNMTDVTVWLNSTHTGKTCKPALGYSFAAGTIDGFGSLNFTQGTTVGDPFWDSLRDQILGKPSEEIKECQKPKPILLHTGELSKPNPWHPDIVDVQIITLGFLAIAAVPGEFTTMSGRRFREAIQEEFATYGMPNMTVVVSGLCNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYIQLFKVLAKAIATGTVANLSTGPEPPFFKQLINTLIPNIVDRAPTGKHFGDVLQPVNPTYRMGEVVEVVFVGANPKNSAEILTHQTFLTVEKYEATSATWQIVHNDASWETRFYWHKGLLGYSNTTIQWHIPDSAQPGIYRIRYFGHSRKQDLLKAAVIVSFESTSSTFEVVTAL", "length": 786, "header": "tr|A0A5G2Q9X4-1|F1SCZ9_PIG Computationally mapped isoform of Neutral ceramidase OS=Sus scrofa OX=9823 GN=ASAH2 PE=1 SV=1 CANONICAL=F1SCZ9-1" }, "locus": { "chromosome": "14", "start_pos": 99100578, "end_pos": 99027781, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086528.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086528.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060774.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060774.1" } ] } }, { "isoform_ac": "A0A5G2QGS8-1", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9/entry#A0A5G2QGS8-1", "sequence": { "sequence": "MAKRTFSTFETFLIFLLVMMTGVTVALLSLLFITSGTIENNKDSGFLTTQSPPATQGSSTPQGSTLTQGPADTQGPTATQASPTPSTPEPTLFQNFSGYHIGVGRADCTGQVADINLTNTFTLLYPSCFIFVSSFLKVLNRLQSKYGSLYRRDNVILSGTHTHSGPAGYFQYTTFVLASEGFSNRTFEYMVNGIMKSIEIAHTNMKPGKIFINKGNVDGAQINRSPTSYLWNPLSERARYSSNTDKEMLLLKMVDLNGDDLGLISWFAIHPVSMNNSNHLVNSDNMGYASYLFEQEKNKGYLPGQGPYVAAFASSNLGDVSPNTLGPSCINTGESCDNANSTCPIGGPSMCIAMGPGQDMFNSTQIIGRIIYEKAKELYASASQEVTGPLASAHQWVNMTDVTVWLNSTHTGKTCKPALGYSFAAGTIDGFGSLNFTQGTTVGDPFWDSLRDQILGKPSEEIKECQKPKPILLHTGELSKPNPWHPDIVDVQIITLGFLAIAAVPGEFTTMSGRRFREAIQEEFATYGMPNMTVVVSGLCNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYIQLFKVLAKAIATGTVANLSTGPEPPFFKQLINTLIPNIVDRAPTGKHFGDVLQPVNPTYRMGEVVEVVFVGANPKNSAEILTHQTFLTVEKYEATSATWQIVHNDASWETRFYWHKGLLGYSNTTIQWHIPDSAQPGIYRIRYFGHSRKQDLLKAAVIVSFESTSSTFEVVTAL", "length": 748, "header": "tr|A0A5G2QGS8-1|F1SCZ9_PIG Computationally mapped isoform of Neutral ceramidase OS=Sus scrofa OX=9823 GN=ASAH2 PE=1 SV=1 CANONICAL=F1SCZ9-1" }, "locus": { "chromosome": "14", "start_pos": 99096743, "end_pos": 99027781, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079643.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079643.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063013.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063013.1" } ] } }, { "isoform_ac": "A0A5G2QXA5-1", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9/entry#A0A5G2QXA5-1", "sequence": { "sequence": "MAKRTFSTFETFLIFLLVMMTGVTVALLSLLFITSGTIENNKDSGFLTTQSPPATQGSSTPQGSTLTQGPADTQGPTATQASPTPSTPEPTLFQNFSGYHIGVGRADCTGQVADINLMGYGKTGQNAQGILTRLYSRAFIMAEPDGSNRVVFVSIEIGMVSQRLRLEVLNRLQSKYGSLYRRDNVILSGTHTHSGPAGYFQYTTFVLASEGFSNRTFEYMVNGIMKSIEIAHTNMKPGKIFINKGNVDGAQINRSPTSYLWNPLSERARYSSNTDKEMLLLKMVDLNGDDLGLISWFAIHPVSMNNSNHLVNSDNMGYASYLFEQEKNKGYLPGQGPYVAAFASSNLGDVSPNTLGPSCINTGESCDNANSTCPIGGPSMCIAMGPGQDMFNSTQIIGRIIYEKAKGKTCKPALGYSFAAGTIDGFGSLNFTQGTTVGDPFWDSLRDQILGKPSEEIKECQKPKPILLHTGELSKPNPWHPDIVDVQIITLGFLAIAAVPGEFTTMSGRRFREAIQEEFATYGMPNMTVVVSGLCNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYIQLFKVLAKAIATGTVANLSTGPEPPFFKQLINTLIPNIVDRAPTGKHFGDVLQPVNPTYRMGEVVEVVFVGANPKNSAEILTHQTFLTVEKYEATSATWQIVHNDASWETRFYWHKGLLGYSNTTIQWHIPDSAQPGIYRIRYFGHSRKQDLLKAAVIVSFESTSSTFEVVTAL", "length": 743, "header": "tr|A0A5G2QXA5-1|F1SCZ9_PIG Computationally mapped isoform of Neutral ceramidase OS=Sus scrofa OX=9823 GN=ASAH2 PE=1 SV=1 CANONICAL=F1SCZ9-1" }, "locus": { "chromosome": "14", "start_pos": 99096743, "end_pos": 99027781, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069496.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069496.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068780.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068780.1" } ] } }, { "isoform_ac": "A0A5G2QXV9-1", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9/entry#A0A5G2QXV9-1", "sequence": { "sequence": "MAKRTFSTFETFLIFLLVMMTGVTVALLSLLFITSGTIENNKDSGFLTTQSPPATQGSSTPQGSTLTQGPADTQGPTATQASPTPSTPEPTLFQNFSGYHIGVGRADCTGQVADINLMGYGKTGQNAQGILTRLYSRAFIMAEPDGSNRVVFVSIEIGMVSQRLRLEVLNRLQSKYGSLYRRDNVILSGTHTHSGPAGYFQYTTFVLASEGFSNRTFEYMVNGIMKSIEIAHTNMKPGKIFINKGNVDGAQINRSPTSYLWNPLSERARYSSNTDKEMLLLKMVDLNGDDLGLISWFAIHPVSMNNSNHLVNSDNMGYASYLFEQEKNKGYLPGQGPYVAAFASSNLGDVSPNTLGPSCINTGESCDNANSTCPIGGPSMCIAMGPGQDMFNSTQIIGRIIYEKAKELYASASQEVTGPLASAHQWVNMTDVTVWLNSTHTGKTCKPALGYSFAAGTIDGFGSLNFTQGTTVGDPFWDSLRDQILGKPSEEIKECQKPKPILLHTGELSKPNPWHPDIVDVQIITLGFLAIAAVPGEFTTMSGRRFREAIQEEFATYGMPNMTVVVSGLCNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYIQLFKVLAKAIATGTVANLSTGPEPPFFKQLINTLIPNIVDRAPTGKHFGDVLQPVNPTYRMTHQTFLTVEKYEATSATWQIVHNDASWETRFYWHKGLLGYSNTTIQWHIPDSAQPGIYRIRYFGHSRKQDLLKAAVIVSFESTSSTFEVVTAL", "length": 758, "header": "tr|A0A5G2QXV9-1|F1SCZ9_PIG Computationally mapped isoform of Neutral ceramidase OS=Sus scrofa OX=9823 GN=ASAH2 PE=1 SV=1 CANONICAL=F1SCZ9-1" }, "locus": { "chromosome": "14", "start_pos": 99096743, "end_pos": 99027781, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074825.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074825.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069712.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069712.1" } ] } }, { "isoform_ac": "A0A8W4FH09-1", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9/entry#A0A8W4FH09-1", "sequence": { "sequence": "GVSYKTFAWRSDVLNRLQSKYGSLYRRDNVILSGTHTHSGPAGYFQYTTFVLASEGFSNRTFEYMVNGIMKSIEIAHTNMKPGKIFINKGNVDGAQINRSPTSYLWNPLSERARYSSNTDKEMLLLKMVDLNGDDLGLISWFAIHPVSMNNSNHLVNSDNMGYASYLFEQEKNKGYLPGQGPYVAAFASSNLGDVSPNTLGPSCINTGESCDNANSTCPIGGPSMCIAMGPGQDMFNSTQIIGRIIYEKAKELYASASQEVTGPLASAHQWVNMTDVTVWLNSTHTGKTCKPALGYSFAAGTIDGFGSLNFTQGTTVGDPFWDSLRDQILGKPSEEIKECQKPKPILLHTGELSKPNPWHPDIVDVQIITLGFLAIAAVPGEFTTMSGRRFREAIQEEFATYGMPNMTVVVSGLCNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYIQLFKVLAKAIATGTVANLSTGPEPPFFKQLINTLIPNIVDRAPTGKHFGDVLQPVNPTYRMGEVVEVVFVGANPKNSAEILTHQTFLTVEKYEATSATWQIVHNDASWETRFYWHKGLLGYSNTTIQWHIPDSAQPGIYRIRYFGHSRKQDLLKAAVIVSFESTSSTFEVVTAL", "length": 623, "header": "tr|A0A8W4FH09-1|F1SCZ9_PIG Computationally mapped isoform of Neutral ceramidase OS=Sus scrofa OX=9823 GN=ASAH2 PE=1 SV=1 CANONICAL=F1SCZ9-1" }, "locus": { "chromosome": "14", "start_pos": 99090067, "end_pos": 99027781, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091753.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091753.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078522.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078522.1" } ] } }, { "isoform_ac": "F1SCZ9-1", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9/entry#F1SCZ9-1", "sequence": { "sequence": "MAKRTFSTFETFLIFLLVMMTGVTVALLSLLFITSGTIENNKDSGFLTTQSPPATQGSSTPQGSTLTQGPADTQGPTATQASPTPSTPEPTLFQNFSGYHIGVGRADCTGQVADINLMGYGKTGQNAQGILTRLYSRAFIMAEPDGSNRVVFVSIEIGMVSQRLRLEVLNRLQSKYGSLYRRDNVILSGTHTHSGPAGYFQYTTFVLASEGFSNRTFEYMVNGIMKSIEIAHTNMKPGKIFINKGNVDGAQINRSPTSYLWNPLSERARYSSNTDKEMLLLKMVDLNGDDLGLISWFAIHPVSMNNSNHLVNSDNMGYASYLFEQEKNKGYLPGQGPYVAAFASSNLGDVSPNTLGPSCINTGESCDNANSTCPIGGPSMCIAMGPGQDMFNSTQIIGRIIYEKAKELYASASQEVTGPLASAHQWVNMTDVTVWLNSTHTGKTCKPALGYSFAAGTIDGFGSLNFTQGTTVGDPFWDSLRDQILGKPSEEIKECQKPKPILLHTGELSKPNPWHPDIVDVQIITLGFLAIAAVPGEFTTMSGRRFREAIQEEFATYGMPNMTVVVSGLCNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYIQLFKVLAKAIATGTVANLSTGPEPPFFKQLINTLIPNIVDRAPTGKHFGDVLQPVNPTYRMGEVVEVVFVGANPKNSAEILTHQTFLTVEKYEATSATWQIVHNDASWETRFYWHKGLLGYSNTTIQWHIPDSAQPGIYRIRYFGHSRKQDLLKAAVIVSFESTSSTFEVVTAL", "length": 778, "header": "tr|F1SCZ9-1|F1SCZ9_PIG Isoform 1 of Neutral ceramidase OS=Sus scrofa OX=9823 GN=ASAH2 PE=1 SV=3 CANONICAL=F1SCZ9-1" }, "locus": { "chromosome": "14", "start_pos": 99096743, "end_pos": 99027781, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011417.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011417.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011121.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011121.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 84, "start_aa": "Thr", "end_pos": 84, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr84", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FH09", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH09" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157065", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157065", "resource": "KEGG Pathway" }, { "id": "R-SSC-9840310", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840310", "resource": "Reactome", "description": "Glycosphingolipid catabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MCS9-1", "protein_name": "Neutral ceramidase", "gene_name": "ASAH2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAKRTFSSFEIFLIFLLVITTGITVALLSLLFITSGTIENHTGFPSTQGPPATQSPPATQGSAAPQNSTPSRGPTTTQASPTPSTPEPTLFQNFSGYHIGVGRADCTGQVSDINLMGYAKTGQYARGILTRLYSRAFIMAEPDGSNRIVFVSIDIGMVSQRLRLEVLSRLQNKYGSLYRRDNVILSGTHTHSGPAGYFQYTTFVIASEGFSNRTFEYMVTGIVESVEIAHKNMKPGKIFINKGTVDGAQINRSPTSYLWNPQSERARYSSNTDKEMVLLKMVDLNGEELGLISWFAIHPVSMKNTNHLVNSDNVGYASYLFEQEKNKGYLPGEGPYVAAFASSNLGDVSPNVLGPQCTNTGESCDNANSSCPIGGPSMCVAMGPGQDMFESTQIIGRIIYDKAKELYESASQEVTGPLASAHQWVNMTDVTVWLNSTHTVKTCKPALGYSFAAGTIDGFGTVSFTQGMTEGDSFWDTLRDQVLGKPSEEIKECHKPKPVLLQTGELLNPHPWHPDIVDVQIVTLGFLAITAIPGEFTTMSGRRLRQAVREEFEAYGMLNMTVVISGLCNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYIQLFRVLAKAIATDTVANLSSGPKPPFFEELMSPLIPNIVDRAPEGTTFGDVLLPANTIYRVGEVVEVTFVGANPKNSAENRTHQTFLTVEKYEATSATWQIMHNDASWETRFYWHKGSLGLSNATIQWHIPDTAQPGTYRIKYFGHSRKQDLLKPAVLLSFESTPSVFEVTTTW", "length": 776 }, "evidence": [ { "id": "F1SCZ9", "url": "https://omabrowser.org/oma/group/F1SCZ9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8C2MZV7-1", "protein_name": "Neutral ceramidase", "gene_name": "Asah2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKRTFSTLEAFLIFLLVMMTAITVALLTLLFVTSGTIENNKDSGNHGSSTTLSPTTTQTSPITQAPDPPPFQNFSGYYIGVGRADCTGQVSDINLMGYGKRGQNARGLLTRLYSRAFILVEPDGSNRMAFVSVELGMISQRLRLEVLKRLQSKYGSLYRRDNVILSGTHTHSGPAGFFQYTIYVLASEGFSNRTFQYLVSGIVKSIEIAHTNLKPGKIFVNKGNVANVQINRSPSSYLQNPPSERARYSSNTDKEMLLLKMVDLNGEDLGLISWFAIHPVSMNNSNHLVNSDNMGYAAYLFEQEKNRGYLPGQGPFVAGFASSNLGDVSPNILGPHCANTGESCDNEKSTCPVGGPSMCMASGPGQDIFDSTQIIGRMIYQTAKELHDSASQEVTGPVLAAHQWVNMTDVSVMLNDTYAVKTCKPALGYSFAAGTIDGVSGLNITQGTTEGDPFWDTIRDQLLGKPSGEIIECHKPKPILLHTGELTKPHPWHPDIVDVQIVTLGSLAIAAIPGEFTTMSGRRFREAVKKEFESYGMKDMTVVISGLCNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYIQLFRDLAKAIATDTVANMSSGPEPPFFNNLIATLIPNIPDRTPIGRHFGDVLQPAKPEYRVGEVVEVTFVGANPKNSAENQTHQTFLTVEKYEDSIGDWQILYNDASWETRFYWHKGTLGLSNATIEWYIPDTAQPGIYRIRYFGHNRKQELLKPAVILAFEGISSPFEVVTT", "length": 756 }, "evidence": [ { "id": "F1SCZ9", "url": "https://omabrowser.org/oma/group/F1SCZ9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F4HQM3-1", "protein_name": "Neutral ceramidase 1", "gene_name": "NCER1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MELSLVRLWNTCFPSFFYISTVLFLLTGGGVYSHSEYLIGLGSYDITGPAADVNMMGYANMEQVASGIHFRLRARTFIVSEPQGKRVVFVNLDACMASQIVKLKVIERLKARYGDLYTEQNVGISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIENSIIQAHENLRPGSIFLNNGELLDAGVNRSPSAYLNNPSKERSKHKYNVDKEMTLLKFVDDQWGPVGSFNWFATHGTSMSRTNSLISGDNKGAASRFMEDWYEQNTAERSYSEEFISDEIPRRVSSLIENHQDSHHELLELASYFESQPGKPVTRISSSARRVRSALRKADKPGFVSAFCQTNCGDVSPNVLGAFCLDTGLPCDFNHSTCGGKNEMCYGRGPGYPDEFESTRIIGERQFKMALELFNKASEQLQGKVDYRHVYVDFSQLNVTLPKKDGKSEVVKTCPAAMGFAFAAGTTDGPGAFDFTQGDDKGNPFWRLVRNVLKTPDKKQIDCHYPKPILLDTGEMTKPYDWAPSILSLQVLRIGQLFILSVPGEFTTMAGRRLRYAVKTQLKNSGNKDLSGEIHVVIAGLANGYSQYVTTFEEYQVQRYEGASTLYGPHTLSGYIQEFKKLSKSLVLDMPVQPGPQPPDLLDKQLSFLTPVMMDTTPSGDSFGDVISDVPKNLSLKRGNGQVTVVFRSACPRNDLLTEGTFTLVERLEQKDKTWTPVYDDDDLCLRFKWSRHKKLSSRSQATVEWRIPESASPGVYRITHFGAAKKLFGSVHHFTGSSSAFVVT", "length": 779 }, "evidence": [ { "id": "F1SCZ9", "url": "https://omabrowser.org/oma/group/F1SCZ9/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q54BK2-1", "protein_name": "Neutral ceramidase A", "gene_name": "dcd2A", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKRSIVFIYSLVILLLSVGFIDAFKISIENHIKLSDDSSYQIGTGIYDITGPGAETNMMGYAMPGQITGGIHFRQRARAFVFIDSEGNRAVYVSTDSCMIFQEVKIQVIQDLQEIFGPTLYTHDNVLLSGTHTHSGPAGFSEYALYGITALGFYKKNFDTICDGIVQAIVKAHKSVQPARMLTQQGELWNSNINRSPYAYDNNPEEEKAMYDANVDKNMTVIRIEDMSGNPFAAISFFGVHCTSMNNTNHLISGDNKGYASYLWEKHANGQSSLPGTGPFIAAFGQSNEGDVSPNTRGPTCRDGKPCDYKTSTCNGKVEECWALGPGTDGDMFESTQIIGGNQFNKALELFNNATIQVSGKIQYRHTWKPFTNVSVEAPYNSGVEGATTCRGAMGYSFAGGTTDGPGAFNFIQGDNSTTNPFWNFIGGIIAKPTPQQTACQAPKPILIDVGMVEPIPWVPDVMPLQIITLGQIVLVAVPGEFTTMSGRRLRNTVREIIGQSIENPIVLIAGLANTYSGYIATFEEFQVQRYEGASTVFGPHTLGAYQQEFANLAQSIVDGSQADPGTFPRNMSGHTPFFLPPVIVDVAPKFDDFGDIYTDVSTTTPYSINQTVTVIFYGANLRNNFMTESSFLTVDQLQSNGQWTTILNDGDWDTKLYWKMHDLGFSLITVDWTISPITQPGTYRITHSGYAKKNPFSDNLTFYQGISSNFNVQ", "length": 714 }, "evidence": [ { "id": "F1SCZ9", "url": "https://omabrowser.org/oma/group/F1SCZ9/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5W7F1-1", "protein_name": "Neutral ceramidase", "gene_name": "asah2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MASKSRRLSGLEISLIVLFLLMTAVSVALITVLALKQESDKKEEVTPEEPSPSVTPPEKPYLIGVGRADCTGPVADLPMMGYANTDQTARGLHTRLFSRAFIVDDGNKRVVFVTSDIGMVSQRLRLEVFQALKEKYGDLYRQDNVVLSGTHTHSGVGGYFQYTLFMITSKGYIKPSIQAIVSGIVKSIDIAHRNLRPGRIFINKGQVADSNFNRSPHSYMNNPEEERNRYEFNTDKQIVVLKFTDLDGDGIGLLSWFAVHPVSMNYTNRMVSSDNLGYASYIFEQEKNIGFLPGEKGPFVAGFSSSNLGDSSPNIRGPVCVNTGLKCDYINSSCPVGGKKACIAFGPGEDMFESTRIIGENMFKIAKELYGSAKQELHGPVYGAHQWVNMTDETVQFNSTHTGRTCKPALGHSFAAGTTDGGGEFNFLQGDTEGDPFWDGIRDAVLGPPSNETKACHQPKPILFSTGEMDSPLPWHPAIVDVQIITIGSLAVVAVPGEFTTMSGRRIREAVKRELEVKEPFTNAEVVVAGLCNIYTHYITTYEEYQIQRYEGASTIFGPHTLSAYIQRYRGLAKAIAHGTIGELPKGPEPPFFDEDKLFNQVRDPVADVAPVGTTFGDVLQEVNPVYKVGEIASVTFVSGNPRHSGDIRDTTLVTVERFHNDTGSWEIIHNDASWETRFHWIKGLAGRSQAKVEWHIPQTAQAGTYQIQYFGHYKQTTENTTVITPYVGTSAAFKVARSFYYF", "length": 743 }, "evidence": [ { "id": "F1SCZ9", "url": "https://omabrowser.org/oma/group/F1SCZ9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q91XT9-1", "protein_name": "Neutral ceramidase", "gene_name": "Asah2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKRTFSSLEAFLIFLLVMMTAITVALLTLLFVTSGTIENHKDSGNHWVSTTQGPTTTQSSPTTQTPTTQTPDLPPSQNFSGYYIGVGRADCTGQVSDINLMGYGKNGQNAQGLLTRLFSRAFILADPDGSNRMAFVSVELCMISQRLRLEVLKRLQSKYGSLYRRDNVILSATHTHSGPAGFFQYTLYILASEGFSNRTFQYIVSGIVKSIDIAHTNLKPGKVLINKGNVANVQINRSPSSYLQNPPSERARYSSDTDKEMVVLKLVDLNGEDLGLISWFAVHPVSMNNSNHLVNSDNMGYAAYLFEQEKNRGYLPGQGPFVAGFASSNLGDVSPNILGPHCVNTGESCDNDKSTCPSGGPSMCMASGPGQDMFESTHIIGRVIYQKAKELHASASQEVTGPVLTAHQWVNMTDVSVQLNATHTVKTCKAALGYSFAAGTIDGVSGLNITQGTTEGNLFWDTLRDQLLGKPSEEIIECQKPKPILIHTGELTKPHPWQPDIVDIQIVTLGSLAIAAIPGEFTTMSGRRLREAVKKEFALYGMKDMTVVIAGLSNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYIQLFRALAKAIATDTVANMSSGPEPPFFKNLIGSLIPNIADRAPIGKQFGDVLQPAKPEYRVGEVVEVVFVGANPKNSAENQTHQTFLTVEKYEDSVANWQIMHNDASWETRFYWHKGVLGLSNATIHWHIPDTALPGVYRIRYFGHNRKQELLKPAVILAFEGISSPFEIVTT", "length": 761 }, "evidence": [ { "id": "F1SCZ9", "url": "https://omabrowser.org/oma/group/F1SCZ9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9JHE3-1", "protein_name": "Neutral ceramidase", "gene_name": "Asah2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKRTFSTLEAFLIFLLVIMTVITVALLTLLFVTSGTIENHKDSGNHWFSTTLGSTTTQPPPITQTPNFPSFRNFSGYYIGVGRADCTGQVSDINLMGYGKNGQNARGLLTRLFSRAFILADPDGSNRMAFVSVELCMISQRLRLEVLKRLESKYGSLYRRDNVILSAIHTHSGPAGFFQYTLYILASEGFSNRTFQYIVSGIMKSIDIAHTNLKPGKIFINKGNVANVQINRSPSSYLLNPQSERARYSSNTDKEMLVLKLVDLNGEDLGLISWFAIHPVSMNNSNHFVNSDNMGYAAYLFEQEKNKGYLPGQGPFVAGFASSNLGDVSPNILGPHCVNTGESCDNDKSTCPNGGPSMCMASGPGQDMFESTHIIGRIIYQKAKELYASASQEVTGPVLAAHQWVNMTDVSVQLNATHTVKTCKPALGYSFAAGTIDGVSGLNITQGTTEGDPFWDTLRDQLLGKPSEEIVECQKPKPILLHSGELTIPHPWQPDIVDVQIVTVGSLAIAAIPGELTTMSGRRFREAIKKEFALYGMKDMTVVIAGLSNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYIQLFRDLAKAIATDTVANMSSGPEPPFFKNLIASLIPNIADRAPIGKHFGDVLQPAKPEYRVGEVVEVIFVGANPKNSAENQTHQTFLTVEKYEDSVADWQIMYNDASWETRFYWHKGILGLSNATIYWHIPDTAYPGIYRIRYFGHNRKQELLKPAVILAFEGISSPFEVVTT", "length": 756 }, "evidence": [ { "id": "F1SCZ9", "url": "https://omabrowser.org/oma/group/F1SCZ9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NR71-1", "protein_name": "Neutral ceramidase", "gene_name": "ASAH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKRTFSNLETFLIFLLVMMSAITVALLSLLFITSGTIENHKDLGGHFFSTTQSPPATQGSTAAQRSTATQHSTATQSSTATQTSPVPLTPESPLFQNFSGYHIGVGRADCTGQVADINLMGYGKSGQNAQGILTRLYSRAFIMAEPDGSNRTVFVSIDIGMVSQRLRLEVLNRLQSKYGSLYRRDNVILSGTHTHSGPAGYFQYTVFVIASEGFSNQTFQHMVTGILKSIDIAHTNMKPGKIFINKGNVDGVQINRSPYSYLQNPQSERARYSSNTDKEMIVLKMVDLNGDDLGLISWFAIHPVSMNNSNHLVNSDNVGYASYLLEQEKNKGYLPGQGPFVAAFASSNLGDVSPNILGPRCINTGESCDNANSTCPIGGPSMCIAKGPGQDMFDSTQIIGRAMYQRAKELYASASQEVTGPLASAHQWVDMTDVTVWLNSTHASKTCKPALGYSFAAGTIDGVGGLNFTQGKTEGDPFWDTIRDQILGKPSEEIKECHKPKPILLHTGELSKPHPWHPDIVDVQIITLGSLAITAIPGEFTTMSGRRLREAVQAEFASHGMQNMTVVISGLCNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYIQLFRNLAKAIATDTVANLSRGPEPPFFKQLIVPLIPSIVDRAPKGRTFGDVLQPAKPEYRVGEVAEVIFVGANPKNSVQNQTHQTFLTVEKYEATSTSWQIVCNDASWETRFYWHKGLLGLSNATVEWHIPDTAQPGIYRIRYFGHNRKQDILKPAVILSFEGTSPAFEVVTI", "length": 780 }, "evidence": [ { "id": "F1SCZ9", "url": "https://omabrowser.org/oma/group/F1SCZ9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VA70-1", "protein_name": "Pan-ceramidase", "gene_name": "CDase", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MANSKMAFLAFLAVSFLCGLVSATYKVGVGRADITGPPVEINFMGYANIKQVGRGIHTRVFARAFVVEDEKGNRVAFVSADAGMMGYGLKREVIKRLQARYGNIYHNDNVAISGTHTHGAPGGFLMHLLYDISILGFVPQTFEVMAQGLYLCIKRATDNLVDGRILLSKTTVLNVNINRSPSSYLRNPAEERAQYEHDTDKTLTQLRFVDLENNLLGAFNWYAVHATSMNNTNRLVTSDNVGYAALLLEKEYNPNKMPGKGKFVGAFCSSNLGDVSPNIMGPKCSISGNECDLLTSRCPTGEGDCFASGPGKDMFESTQILGQRLADAALGLLNEQSQESTAREVTGDVRFIHQFVDMPNYNGSTYNPLSRKVDKIRGCQPAMGYSFAAGTTDGPGAFSFEQGTTTDNPMWNFVRDFIAAPTQEDIKCHEPKPILLATGRATFPYEWQPKIVSDQLLKIGDVIIAAVPCEFTTMAGRRLRNQIRAAASAVGGIDTEVIIAGLTNIYTSYTVTPEEYQAQRYEAASTIFGPHTHSIYMDVFERLTKAMMRNETVDAGPSPPYMNDVMLSLNTGVLFDGHPINTDFGYVKSQPNKEYGINETVKVTYISGNPRNNLFTEKTYFTIERKINEDRWKVAYTDASWETKMVWHRTNTILGFSEMDIYWDISPQTLPGEYRIRHSGEYKYILGGKYPYEGLTHSFTVKED", "length": 704 }, "evidence": [ { "id": "F1SCZ9", "url": "https://omabrowser.org/oma/group/F1SCZ9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SCZ9", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SCZ9", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SCZ9", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9" } ], "pmid": "" }, { "name": "caveola", "id": "GO:0005901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005901", "evidence": [ { "database": "UniProtKB", "id": "F1SCZ9", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SCZ9", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SCZ9", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "ceramide biosynthetic process", "id": "GO:0046513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046513", "evidence": [ { "database": "UniProtKB", "id": "F1SCZ9", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9" } ], "pmid": "" }, { "name": "sphingosine biosynthetic process", "id": "GO:0046512", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046512", "evidence": [ { "database": "UniProtKB", "id": "F1SCZ9", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9" } ], "pmid": "" }, { "name": "ceramide catabolic process", "id": "GO:0046514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046514", "evidence": [ { "database": "UniProtKB", "id": "F1SCZ9", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9" } ], "pmid": "" }, { "name": "lipid digestion", "id": "GO:0044241", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044241", "evidence": [ { "database": "UniProtKB", "id": "F1SCZ9", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9" } ], "pmid": "" }, { "name": "long-chain fatty acid biosynthetic process", "id": "GO:0042759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042759", "evidence": [ { "database": "UniProtKB", "id": "F1SCZ9", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SCZ9", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9" } ], "pmid": "" }, { "name": "N-acylsphingosine amidohydrolase activity", "id": "GO:0017040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017040", "evidence": [ { "database": "UniProtKB", "id": "F1SCZ9", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 253, "end_pos": 255, "annotation": "n_glycosylation_sequon" }, { "start_pos": 305, "end_pos": 307, "annotation": "n_glycosylation_sequon" }, { "start_pos": 370, "end_pos": 372, "annotation": "n_glycosylation_sequon" }, { "start_pos": 392, "end_pos": 394, "annotation": "n_glycosylation_sequon" }, { "start_pos": 428, "end_pos": 430, "annotation": "n_glycosylation_sequon" }, { "start_pos": 437, "end_pos": 439, "annotation": "n_glycosylation_sequon" }, { "start_pos": 465, "end_pos": 467, "annotation": "n_glycosylation_sequon" }, { "start_pos": 561, "end_pos": 563, "annotation": "n_glycosylation_sequon" }, { "start_pos": 621, "end_pos": 623, "annotation": "n_glycosylation_sequon" }, { "start_pos": 727, "end_pos": 729, "annotation": "n_glycosylation_sequon" }, { "start_pos": 95, "end_pos": 97, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "20856", "name": "", "equation": "an N-acylsphing-4-enine + H2O = sphing-4-enine + a fatty acid", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "20856", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/20856" } ] }, { "id": "R-SSC-1606583", "name": "ASAH2 hydrolyzes ceramide (plasma membrane)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [ "R-ALL-1606609" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1606583", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1606583" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-1606609", "participant_name": "SPG [plasma membrane]", "crossref": [ { "id": "84410", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCZ9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 778, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCZ9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCZ9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9" }, { "id": "PF17048", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17048" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Neutral/alkaline non-lysosomal ceramidase C-terminal", "eco_id": "ECO_0000259", "start_pos": 607, "end_pos": 774, "start_aa": "Phe", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SCZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCZ9" }, { "id": "PF04734", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04734" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Neutral/alkaline non-lysosomal ceramidase N-terminal", "eco_id": "ECO_0000259", "start_pos": 99, "end_pos": 605, "start_aa": "Tyr", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [ { "evidence": [ { "id": "A0A8W4FH09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH09#function" }, { 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"id": "XP_003130335", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130335" } ] } ], "protein_names": [ { "name": "Thiamine pyrophosphokinase", "type": "recommended", "evidence": [ { "id": "F1SAD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAD1/entry#names_and_taxonomy" } ] }, { "name": "2.7.6.2", "type": "synonym", "evidence": [ { "id": "F1SAD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAD1/entry#names_and_taxonomy" } ] }, { "name": "thiamin pyrophosphokinase 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003130335", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130335" } ] } ], "function": [ { "annotation": "Catalyzes the phosphorylation of thiamine to thiamine pyrophosphate (TPP) utilizing UTP and therefore links the biosynthesis of TPP to pyrimidines metabolism. By producing thiamine pyrophosphate, a cofactor of the mitochondrial pyruvate dehydrogenase indirectly regulates pyruvate oxidation and lipogenesis. Although it can also catalyze thiamine phosphorylation using ATP and CTP in vitro, it does so with significantly lower efficiency and without physiological relevance evidence.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH81#function" }, { "database": "UniProtKB", "id": "ARBA00055888", "url": "https://www.uniprot.org/uniprotkb/ARBA00055888#function" }, { "database": "UniProtKB", "id": "A0A4X1UMM2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMM2#function" }, { "database": "UniProtKB", "id": "A0A287B5Z9", "url": "https://www.uniprot.org/uniprotkb/A0A287B5Z9#function" }, { "database": "UniProtKB", "id": "A0A5G2QHI6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHI6#function" }, { "database": "UniProtKB", "id": "F1SAD1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAD1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TPK1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1", "locus": { "chromosome": "9", "start_pos": 113305175, "end_pos": 112931795, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015462", "url": "https://www.ensembl.org/id/ENSSSCG00000015462" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015462", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015462", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07995", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07995", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524699", "url": "https://www.ncbi.nlm.nih.gov/gene/100524699", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006282", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006282", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007371", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007371", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007373", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007373", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016966", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016966", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036371", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036371", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036759", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036759", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524699", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524699", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HHLYMMT", "url": "https://omabrowser.org/oma/group/HHLYMMT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1UMM2", "url": "https://www.orthodb.org/?gene=A0A4X1UMM2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SAD1", "url": "https://www.orthodb.org/?gene=F1SAD1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13622", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13622", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13622:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13622:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04263", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04263", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04265", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04265", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-196819", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196819", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003130335", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130335", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "79423", "url": "https://www.rhea-db.org/rhea/79423", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B5Z9", "url": "https://www.uniprot.org/uniprotkb/A0A287B5Z9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5Z9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5Z9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UMM2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UMM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UMM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UPA0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UPA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UPA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UPA0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH81-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH81-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHI6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHI6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAD1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAD1-1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEHAITPLEPLLPSGNLRYCLVILNQPLDKCFRHLWHKALFKACADGGANRLYDITEGERESFLPEFVNGDFDSIRPDVREYYATKGCEFISTPDQDHTDFTKCLEVLQKKLEEKDLQVDMIVTLGGLAGRFDQIMASVSTLFQATRITPLPIIIIQEESLIYLLQPGKHKLHVDTGMEGDWCGLIPVGEPCSRVTTTGLKWNLTNHTLSFGTLVSTSNTYDGSGVVTVETDRPLLWTMAIKN", "length": 243, "header": "tr|F1SAD1-1|F1SAD1_PIG Isoform 1 of Thiamine pyrophosphokinase OS=Sus scrofa OX=9823 GN=TPK1 PE=1 SV=4 CANONICAL=F1SAD1-1" }, "isoforms": [ { "isoform_ac": "A0A287B5Z9-1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1/entry#A0A287B5Z9-1", "sequence": { "sequence": "HAHYLLPIHLFILLFFSIGNLRYCLVILNQPLDKCFRHLWHKALFKACADGGANRLYDITEGERESFLPEFVNGDFDSIRPDVREYYATKGCEFISTPDQDHTDFTKCLEVLQKKLEEKDLQVDMIVTLGGLAGRFDQIMASVSTLFQATRITPLPIIIIQEESLIYLLQPNVLLIVLFPLHLLFTICSLSLPKNHYLANMGKHKLHVDTGMEGDWCGLIPVGEPCSRVTTTGLKWNLTNHTLSFGTLVSTSNTYDGSGVVTVETDRPLLWTMAIKN", "length": 277, "header": "tr|A0A287B5Z9-1|F1SAD1_PIG Computationally mapped isoform of Thiamine pyrophosphokinase OS=Sus scrofa OX=9823 GN=TPK1 PE=1 SV=2 CANONICAL=F1SAD1-1" }, "locus": { "chromosome": "9", "start_pos": 113303738, "end_pos": 113010491, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057925.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057925.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051939.3", "url": "https://www.ensembl.org/id/ENSSSCP00000051939.3" } ] } }, { "isoform_ac": "A0A4X1UMM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1/entry#A0A4X1UMM2-1", "sequence": { "sequence": "MEHAITPLEPLLPSALFKACADGGANRLYDITEGERESFLPEFVNGDFDSIRPDVREYYATKGCEFISTPDQDHTDFTKCLEVLQKKLEEKDLQVDMIVTLGGLAGRFDQIMASVSTLFQATRITPLPIIIIQEESLIYLLQPGKHKLHVDTGMEGDWCGLIPVGEPCSRVTTTGLKWNLTNHTLSFGTLVSTSNTYDGSGVVTVETDRPLLWTMAIKN", "length": 219, "header": "tr|A0A4X1UMM2-1|F1SAD1_PIG Computationally mapped isoform of Thiamine pyrophosphokinase OS=Sus scrofa OX=9823 GN=TPK1 PE=1 SV=1 CANONICAL=F1SAD1-1" }, "locus": { "chromosome": "9", "start_pos": 113303738, "end_pos": 112932522, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058818.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058818.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043433.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043433.1" } ] } }, { "isoform_ac": "A0A4X1UPA0-1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1/entry#A0A4X1UPA0-1", "sequence": { "sequence": "MEHAITPLEPLLPSGNLRYCLVILNQPLDKCFRHLWHKALFKACADGGANRLYDITEGERESFLPEFVNGDFDSIRPDVREYYATKGCEFISTPDQDHTDFTKCLEVLQKKLEEKDLQGKHKLHVDTGMEGDWCGLIPVGEPCSRVTTTGLKWNLTNHTLSFGTLVSTSNTYDGSGVVTVETDRPLLWTMAIKN", "length": 194, "header": "tr|A0A4X1UPA0-1|F1SAD1_PIG Computationally mapped isoform of Thiamine pyrophosphokinase OS=Sus scrofa OX=9823 GN=TPK1 PE=1 SV=1 CANONICAL=F1SAD1-1" }, "locus": { "chromosome": "9", "start_pos": 113303738, "end_pos": 112932522, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088157.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088157.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065159.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065159.1" } ] } }, { "isoform_ac": "A0A5G2QH81-1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1/entry#A0A5G2QH81-1", "sequence": { "sequence": "LPEGGGAASPALSLNRRAGPARRRGTSAERRALDHPRSRSLRPAHWWLHPPLWNLRYCLVILNQPLDKCFRHLWHKALFKACADGGANRLYDITEGERESFLPEFVNGDFDSIRPDVREYYATKGCEFISTPDQDHTDFTKCLEVLQKKLEEKDLQVDMIVTLGGLAGRFDQIMASVSTLFQATRITPLPIIIIQEESLIYLLQPGKHKLHVDTGMEGDWCGLIPVGEPCSRVTTTGLKWNLTNHTLSFGTLVSTSNTYDGSGVVTVETDRPLLWTMAIKN", "length": 281, "header": "tr|A0A5G2QH81-1|F1SAD1_PIG Computationally mapped isoform of Thiamine pyrophosphokinase OS=Sus scrofa OX=9823 GN=TPK1 PE=1 SV=1 CANONICAL=F1SAD1-1" }, "locus": { "chromosome": "9", "start_pos": 113303738, "end_pos": 112931942, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082185.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082185.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064143.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064143.1" } ] } }, { "isoform_ac": "A0A5G2QHI6-1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1/entry#A0A5G2QHI6-1", "sequence": { "sequence": "IGELGPRAAEAPQPSAERSITLAPAAYGQLTGGSTRLCRPVIRYGACHYPVGTPASLWEFEILPCDFESAFGQVFSSSLAQSFLPEFVNGDFDSIRPDVREYYATKGCEFISTPDQDHTDFTKCLEVLQKKLEEKDLQVDMIVTLGGLAGRFDQIMASVSTLFQATRITPLPIIIIQEESLIYLLQPGKHKLHVDTGMEGDWCGLIPVGEPCSRVTTTGLKWNLTNHTLSFGTLVSTSNTYDGSGVVTVETDRPLLWTMAIKN", "length": 263, "header": "tr|A0A5G2QHI6-1|F1SAD1_PIG Computationally mapped isoform of Thiamine pyrophosphokinase OS=Sus scrofa OX=9823 GN=TPK1 PE=1 SV=1 CANONICAL=F1SAD1-1" }, "locus": { "chromosome": "9", "start_pos": 113303738, "end_pos": 112931985, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077863.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077863.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063320.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063320.1" } ] } }, { "isoform_ac": "F1SAD1-1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1/entry#F1SAD1-1", "sequence": { "sequence": "MEHAITPLEPLLPSGNLRYCLVILNQPLDKCFRHLWHKALFKACADGGANRLYDITEGERESFLPEFVNGDFDSIRPDVREYYATKGCEFISTPDQDHTDFTKCLEVLQKKLEEKDLQVDMIVTLGGLAGRFDQIMASVSTLFQATRITPLPIIIIQEESLIYLLQPGKHKLHVDTGMEGDWCGLIPVGEPCSRVTTTGLKWNLTNHTLSFGTLVSTSNTYDGSGVVTVETDRPLLWTMAIKN", "length": 243, "header": "tr|F1SAD1-1|F1SAD1_PIG Isoform 1 of Thiamine pyrophosphokinase OS=Sus scrofa OX=9823 GN=TPK1 PE=1 SV=4 CANONICAL=F1SAD1-1" }, "locus": { "chromosome": "9", "start_pos": 113303738, "end_pos": 112932522, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016844.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016844.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016393.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016393.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH81", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH81" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524699", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524699", "resource": "KEGG Pathway" }, { "id": "R-SSC-196819", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196819", "resource": "Reactome", "description": "Vitamin B1 (thiamin) metabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "F1RBJ9-1", "protein_name": "Thiamine pyrophosphokinase", "gene_name": "tpk1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDEFTPLDCLLPSGKQRICLVILNQPLDERYFHVLWSKAQIRACADGGANHLYRLTEGRRESFLPDYINGDFDSILPEVKAFYAGKNCKLMETPDQDLTDFTKCLAIMLEEIKAKKLQIDSIVTLGGLGGRFDQTMATVETLFHAQKMTDLPVVVIQDSSLAFLLKEGRHHQLNVNTGMEGKWCSLVPVGSPCLTTTSGLKWNLDNQVLAFGQLVSTSNTYEDHDPKDCRKPVTITTDNPLLWSMGIKRLQSSQTFL", "length": 257 }, "evidence": [ { "id": "F1SAD1", "url": "https://omabrowser.org/oma/group/F1SAD1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F4IV16-1", "protein_name": "Thiamine pyrophosphokinase 2", "gene_name": "TPK2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MLSAMDVMIHSSSFLLPCDETCGTRYALVVLNQNLPRFTPLLWEHAKLRLCADGGANRIYDELPLFFPHEDPFVIRNRYKPDVIKGDMDSIRRDVLDFYVYWGTKVIDESHDQDTTDLDKCISYIRHSTLNQESSRLQILATGALGGRFDHEAGNLNVLYRYPDTRIVLLSDDCLIQLLPKTHRHEIHIHSSLQGPHCGLIPIGTPSANTTTSGLKWDLSNTEMRFGGLISTSNLVKEEIITVESDSDLLWTISIKKTGLPVQDHKP", "length": 267 }, "evidence": [ { "id": "F1SAD1", "url": "https://omabrowser.org/oma/group/F1SAD1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9H3S4-1", "protein_name": "Thiamine pyrophosphokinase 1", "gene_name": "TPK1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEHAFTPLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLLQPGKHRLHVDTGMEGDWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMAIKS", "length": 243 }, "evidence": [ { "id": "F1SAD1", "url": "https://omabrowser.org/oma/group/F1SAD1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SAD1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SAD1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "F1SAD1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1" } ], "pmid": "" }, { "name": "thiamine diphosphokinase activity", "id": "GO:0004788", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004788", "evidence": [ { "database": "UniProtKB", "id": "F1SAD1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1" } ], "pmid": "" }, { "name": "thiamine binding", "id": "GO:0030975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030975", "evidence": [ { "database": "UniProtKB", "id": "F1SAD1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1" } ], "pmid": "" }, { "name": "UTP thiamine diphosphokinase activity", "id": "GO:0141200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141200", "evidence": [ { "database": "UniProtKB", "id": "F1SAD1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SAD1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "thiamine diphosphate biosynthetic process", "id": "GO:0009229", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009229", "evidence": [ { "database": "UniProtKB", "id": "F1SAD1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1" } ], "pmid": "" }, { "name": "thiamine metabolic process", "id": "GO:0006772", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006772", "evidence": [ { "database": "UniProtKB", "id": "F1SAD1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1" } ], "pmid": "" }, { "name": "regulation of pyruvate decarboxylation to acetyl-CoA", "id": "GO:0010510", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010510", "evidence": [ { "database": "UniProtKB", "id": "F1SAD1", "url": "https://www.uniprot.org/uniprotkb/F1SAD1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "79423", "name": "", "equation": "thiamine + UTP = thiamine diphosphate + UMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "79423", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/79423" } ] }, { "id": "R-SSC-196761", "name": "2xTPK1:Mg2+ phosphorylates THMN", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-196934" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-196761", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196761" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-196934", "participant_name": "THMN [cytosol]", "crossref": [ { "id": "18385", "database": "ChEBI", "url": "" }, { "id": "C00378", "database": "COMPOUND", "url": "" }, { "id": "ZINC000000049153", "database": "ZINC", "url": "" }, { "id": "HMDB0000235", "database": "HMDB Metabolite", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAD1" }, { "id": "SM00983", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00983" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thiamin pyrophosphokinase thiamin-binding", "eco_id": "ECO_0000259", "start_pos": 168, "end_pos": 235, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 203, "end_pos": 205 }, { "start_pos": 206, "end_pos": 208 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S9T5-1", "uniprot_ac": "F1S9T5", "uniprot_id": "F1S9T5_PIG", "mass": { "chemical_mass": 57100.0, "monoisotopic_mass": 57100.0 }, "refseq": { "ac": "NP_001001262", "name": "nectin-1 precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" }, "gene_names": [ { "name": "NECTIN1", "type": "recommended", "evidence": [ { "id": "F1S9T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9T5" } ] }, { "name": "HVEC", "type": "synonym", "evidence": [ { "id": "NP_001001262", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" } ] }, { "name": "NECTIN1", "type": "synonym", "evidence": [ { "id": "NP_001001262", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" } ] }, { "name": "PVRL1", "type": "synonym", "evidence": [ { "id": "NP_001001262", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" } ] } ], "protein_names": [ { "name": "Nectin-1", "type": "recommended", "evidence": [ { "id": "F1S9T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9T5/entry#names_and_taxonomy" } ] }, { "name": "Herpes virus entry mediator C", "type": "synonym", "evidence": [ { "id": "F1S9T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9T5/entry#names_and_taxonomy" } ] }, { "name": "Nectin cell adhesion molecule 1", "type": "synonym", "evidence": [ { "id": "F1S9T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9T5/entry#names_and_taxonomy" } ] }, { "name": "Poliovirus receptor-related protein 1", "type": "synonym", "evidence": [ { "id": "F1S9T5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9T5/entry#names_and_taxonomy" } ] }, { "name": "herpes virus entry mediator C", "type": "synonym", "evidence": [ { "id": "NP_001001262", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" } ] }, { "name": "herpesvirus entry mediator C", "type": "synonym", "evidence": [ { "id": "NP_001001262", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" } ] }, { "name": "nectin-1 precursor", "type": "synonym", "evidence": [ { "id": "NP_001001262", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" } ] }, { "name": "nectin-1", "type": "synonym", "evidence": [ { "id": "NP_001001262", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" } ] }, { "name": "poliovirus receptor-related 1 (herpesvirus entry mediator C)", "type": "synonym", "evidence": [ { "id": "NP_001001262", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" } ] }, { "name": "poliovirus receptor-related protein 1", "type": "synonym", "evidence": [ { "id": "NP_001001262", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" } ] } ], "function": [ { "annotation": "A monoclonal antibody neutralizes pesudorabies virus by blocking gD binding to the receptor nectin-1.", "evidence": [ { "database": "RefSeq", "id": "NP_001001262", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" }, { "database": "PubMed", "id": "34339791", "url": "https://glygen.org/publication/PubMed/34339791" } ] }, { "annotation": "Contribution of the second and third Ig-like domains of nectin-1 was analysed by generating transgenic mice expressing the entire ectodomain of nectin-1 fused to the porcine Fc portion.", "evidence": [ { "database": "RefSeq", "id": "NP_001001262", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" }, { "database": "PubMed", "id": "17872513", "url": "https://glygen.org/publication/PubMed/17872513" } ] }, { "annotation": "Pseudorabies virus infects host cells via both human and swine nectin-1. Publication Status: Online-Only", "evidence": [ { "database": "RefSeq", "id": "NP_001001262", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" }, { "database": "PubMed", "id": "28542478", "url": "https://glygen.org/publication/PubMed/28542478" } ] }, { "annotation": "Results demonstrate that a soluble form of the first domain of porcine nectin-1 is able to exert a significant antiviral effect against pseudorabies virus infection.", "evidence": [ { "database": "RefSeq", "id": "NP_001001262", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" }, { "database": "PubMed", "id": "16583156", "url": "https://glygen.org/publication/PubMed/16583156" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9T5", "url": "https://www.uniprot.org/uniprotkb/F1S9T5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NECTIN1", "url": "https://www.uniprot.org/uniprotkb/F1S9T5", "locus": { "chromosome": "9", "start_pos": 46789726, "end_pos": 46891304, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015125", "url": "https://www.ensembl.org/id/ENSSSCG00000015125" } ] } } ], "crossref": [ { "id": "F1S9T5", "url": "https://alphafold.ebi.ac.uk/entry/F1S9T5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015125", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015125", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05886", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05886", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd05890", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05890", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12087", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12087", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "397247", "url": "https://www.ncbi.nlm.nih.gov/gene/397247", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013162", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013162", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041850", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041850", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:397247", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397247", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CVVNYHM", "url": "https://omabrowser.org/oma/group/CVVNYHM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S9T5", "url": "https://www.orthodb.org/?gene=F1S9T5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23277", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23277", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23277:SF69", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23277:SF69", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08205", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08205", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-418990", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418990", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-420597", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-420597", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001001262", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QDK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDK7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8U2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8U2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8U2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8U2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9T5", "url": "https://www.uniprot.org/uniprotkb/F1S9T5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9T5-1", "url": "https://www.uniprot.org/uniprotkb/F1S9T5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARMGLAGAAGRWWGLALGLTAFFLPGAHTQVVQVNDSMYGFIGTDVVLHCSFANPLPGVKITQVTWQKATNGSKQNVAIYNPAMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPAGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGKDDKVLVATCTSANGKPPSVVSWETHLKGEAEYQEIRNPNGTVTVISRYRLVPSREDHRQSLACIVNYHMDRFRESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFRGPINYSMAGTYICEATNPIGTRSGQVEVNITEFPYTPSPPEHGRRAGQVPTAIIGGVVGSILLVLFVVGGIVVALRRRRHTFKGDYSTKKHVYGNGYSKAGIPQHHPPMAQNLQYPEDSDDEKKAGPLGGSSYEEEEEEEGGGGERKVGGPHPKYDEDAKRPYFTVDEAEARQDGYGDRTLGYQYDPEQLDLAENMVSQNDGSFISKKEWYV", "length": 515, "header": "tr|F1S9T5-1|F1S9T5_PIG Isoform 1 of Nectin-1 OS=Sus scrofa OX=9823 GN=NECTIN1 PE=3 SV=3 CANONICAL=F1S9T5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDK7-1", "url": "https://www.uniprot.org/uniprotkb/F1S9T5/entry#A0A5G2QDK7-1", "sequence": { "sequence": "MARMGLAGAAGRWWGLALGLTAFFLPGAHTQVVQVNDSMYGFIGTDVVLHCSFANPLPGVKITQVTWQKATNGSKQNVAIYNPAMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPAGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGKDDKVLVATCTSANGKPPSVVSWETHLKGEAEYQEIRNPNGTVTVISRYRLVPSREDHRQSLACIVNYHMDRFRESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFRGPINYSMAGTYICEATNPIGTRSGQVEVNITEKPLSQGGLGSMASFLGCTVALVVILGVALTIFLLYHWQRKSRLEMEGDGTALPSSQKLEPSPNRQSLLAPEDIQTLHLEPGKPQPQQDEEEQQKLPPQPPYYDLGASPSYHPWGSGPKDTDIHYVELDTSALELAPGPRTTMLGSEEVVEYATIQLSGPLAHDP", "length": 499, "header": "tr|A0A5G2QDK7-1|F1S9T5_PIG Computationally mapped isoform of Nectin-1 OS=Sus scrofa OX=9823 GN=NECTIN1 PE=3 SV=1 CANONICAL=F1S9T5-1" }, "locus": { "chromosome": "9", "start_pos": 46890625, "end_pos": 46792865, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069268.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069268.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060140.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060140.1" } ] } }, { "isoform_ac": "A0A8W4F8U2-1", "url": "https://www.uniprot.org/uniprotkb/F1S9T5/entry#A0A8W4F8U2-1", "sequence": { "sequence": "MARMGLAGAAGRWWGLALGLTAFFLPGAHTQVVQVNDSMYGFIGTDVVLHCSFANPLPGVKITQVTWQKATNGSKQNVAIYNPAMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPAGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGKDDKVLVATCTSANGKPPSVVSWETHLKGEAEYQEIRNPNGTVTVISRYRLVPSREDHRQSLACIVNYHMDRFRESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFRGPINYSMAGTYICEATNPIGTRSGQVEVNITEFPYTPSPPEHGRRAGQVPTAIIGGVVGSILLVLFVVGGIVVALRRRRHTFKGDYSTKKHVYGNGYPTPNTTRMPSGPTSPWMRQRPVRTATGTGLWATSTTLSSWTWPRTWFLRTTGLSFPRRSGTCSPPLQSLRPSPHPHAPCPPPTAHSSRSLPETHPAAQSWPPAPGAPGSPGRPPRLCLGSLPSPASPMVLCSLWLRCC", "length": 538, "header": "tr|A0A8W4F8U2-1|F1S9T5_PIG Computationally mapped isoform of Nectin-1 OS=Sus scrofa OX=9823 GN=NECTIN1 PE=3 SV=1 CANONICAL=F1S9T5-1" }, "locus": { "chromosome": "9", "start_pos": 46890625, "end_pos": 46827080, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097993.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097993.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075693.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075693.1" } ] } }, { "isoform_ac": "F1S9T5-1", "url": "https://www.uniprot.org/uniprotkb/F1S9T5/entry#F1S9T5-1", "sequence": { "sequence": "MARMGLAGAAGRWWGLALGLTAFFLPGAHTQVVQVNDSMYGFIGTDVVLHCSFANPLPGVKITQVTWQKATNGSKQNVAIYNPAMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPAGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGKDDKVLVATCTSANGKPPSVVSWETHLKGEAEYQEIRNPNGTVTVISRYRLVPSREDHRQSLACIVNYHMDRFRESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFRGPINYSMAGTYICEATNPIGTRSGQVEVNITEFPYTPSPPEHGRRAGQVPTAIIGGVVGSILLVLFVVGGIVVALRRRRHTFKGDYSTKKHVYGNGYSKAGIPQHHPPMAQNLQYPEDSDDEKKAGPLGGSSYEEEEEEEGGGGERKVGGPHPKYDEDAKRPYFTVDEAEARQDGYGDRTLGYQYDPEQLDLAENMVSQNDGSFISKKEWYV", "length": 515, "header": "tr|F1S9T5-1|F1S9T5_PIG Isoform 1 of Nectin-1 OS=Sus scrofa OX=9823 GN=NECTIN1 PE=3 SV=3 CANONICAL=F1S9T5-1" }, "locus": { "chromosome": "9", "start_pos": 46890625, "end_pos": 46827309, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016491.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016491.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016048.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016048.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "The first immunoglobulin-like domain of porcine nectin-1 is sufficient to confer resistance to pseudorabies virus infection in transgenic mice.", "journal": "Archives of virology", "date": "2006-09", "authors": "Ono E, Tomioka Y, Watanabe Y, Amagai K, Taharaguchi S, Glenisson J, Cherel P", "evidence": [ { "database": "RefSeq", "id": "NP_001001262", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" } ], "reference": [ { "type": "PubMed", "id": "16583156", "url": "https://glygen.org/publication/PubMed/16583156" } ] }, { "title": "Comparison of the antiviral potentials among the pseudorabies-resistant transgenes encoding different soluble forms of porcine nectin-1 in transgenic mice.", "journal": "The Journal of general virology", "date": "2007-10", "authors": "Ono Etsuro, Tomioka Yukiko, Watanabe Yuki, Amagai Keiko, Morimatsu Masami, Shinya Kyoko, Cherel Pierre", "evidence": [ { "database": "RefSeq", "id": "NP_001001262", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" } ], "reference": [ { "type": "PubMed", "id": "17872513", "url": "https://glygen.org/publication/PubMed/17872513" } ] }, { "title": "Structural basis of nectin-1 recognition by pseudorabies virus glycoprotein D.", "journal": "PLoS pathogens", "date": "2017", "authors": "Li A, Lu G, Qi J, Wu L, Tian K, Luo T, Shi Y, Yan J, Gao GF", "evidence": [ { "database": "RefSeq", "id": "NP_001001262", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" } ], "reference": [ { "type": "PubMed", "id": "28542478", "url": "https://glygen.org/publication/PubMed/28542478" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDK7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDK7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "A monoclonal antibody neutralizes pesudorabies virus by blocking gD binding to the receptor nectin-1.", "journal": "International journal of biological macromolecules", "date": "2021", "authors": "Zhang T, Liu Y, Chen Y, Wang J, Feng H, Wei Q, Zhao S, Yang S, Liu D, Zhang G", "evidence": [ { "database": "RefSeq", "id": "NP_001001262", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001001262" } ], "reference": [ { "type": "PubMed", "id": "34339791", "url": "https://glygen.org/publication/PubMed/34339791" } ] } ], "pathway": [ { "id": "ssc:397247", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397247", "resource": "KEGG Pathway" }, { "id": "R-SSC-418990", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418990", "resource": "Reactome", "description": "Adherens junctions interactions" }, { "id": "R-SSC-420597", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-420597", "resource": "Reactome", "description": "Nectin/Necl trans heterodimerization" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9SIV1-1", "protein_name": "Nectin-1", "gene_name": "NECTIN1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MARMGLAGAAGRWWGLALGLTAFFLPGAQAQMVQVNDSMYGFIGTDVVLHCSFANPLPGVKITQVTWQKATNGSKQNVAIYNPAMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPAGNRESQLNLTVMAKPTNWIEGTHAVLRARKGQDEKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHRQSLACIVNYHMDRFWESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFRGPINYSLAGTYVCEATNPIGTRSAQVEVNITEFPYTPSPPEHGRRAGPVPTAIIGGVVGSILLVLIVVGGIVVALRRRRHTFKGDYSTKKHVYGNGYSKAGIPQHHPPMAQNLQYPEDSDDDKKAGPLGGSSYEEEEDEEGGGGERKVGGPHSKYDEDAKRPYFTVDEAEARQDGYGDRTLGYQYDPEQLDLAENMVSQNDGSFISKKEWYV", "length": 515 }, "evidence": [ { "id": "F1S9T5", "url": "https://omabrowser.org/oma/group/F1S9T5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SBB0-1", "uniprot_ac": "F1SBB0", "uniprot_id": "F1SBB0_PIG", "mass": { "chemical_mass": 108354.0, "monoisotopic_mass": 108354.0 }, "refseq": { "ac": "XP_013854717", "name": "oxysterol-binding protein-related protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013854717" }, "gene_names": [ { "name": "OSBPL1A", "type": "recommended", "evidence": [ { "id": "F1SBB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBB0" } ] }, { "name": "OSBPL1A", "type": "synonym", "evidence": [ { "id": "XP_013854717", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013854717" } ] } ], "protein_names": [ { "name": "Oxysterol-binding protein", "type": "recommended", "evidence": [ { "id": "F1SBB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBB0/entry#names_and_taxonomy" } ] }, { "name": "oxysterol-binding protein-related protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013854717", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013854717" } ] } ], "function": [ { "annotation": "Binds phospholipids; exhibits strong binding to phosphatidic acid and weak binding to phosphatidylinositol 3-phosphate. Stabilizes GTP-bound RAB7A on late endosomes/lysosomes and alters functional properties of late endocytic compartments via its interaction with RAB7A. Binds 25-hydroxycholesterol and cholesterol.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A8P5", "url": "https://www.uniprot.org/uniprotkb/A0A287A8P5#function" }, { "database": "UniProtKB", "id": "ARBA00055419", "url": "https://www.uniprot.org/uniprotkb/ARBA00055419#function" }, { "database": "UniProtKB", "id": "F1SBB0", "url": "https://www.uniprot.org/uniprotkb/F1SBB0#function" }, { "database": "UniProtKB", "id": "A0A5G2QF16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF16#function" }, { "database": "UniProtKB", "id": "A0A5G2QT92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT92#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBB0", "url": "https://www.uniprot.org/uniprotkb/F1SBB0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OSBPL1A", "url": "https://www.uniprot.org/uniprotkb/F1SBB0", "locus": { "chromosome": "6", "start_pos": 108997735, "end_pos": 109221010, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003712", "url": "https://www.ensembl.org/id/ENSSSCG00000003712" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003712", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003712", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13285", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13285", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100511459", "url": "https://www.ncbi.nlm.nih.gov/gene/100511459", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000648", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000648", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037239", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037239", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HAESPHF", "url": "https://omabrowser.org/oma/group/HAESPHF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SBB0", "url": "https://www.orthodb.org/?gene=F1SBB0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10972", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10972", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10972:SF53", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10972:SF53", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01237", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01237", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13857", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13857", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-192105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-192105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2132295", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013854717", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013854717", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A8P5", "url": "https://www.uniprot.org/uniprotkb/A0A287A8P5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8P5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF16-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT92", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT92-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT92-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBB0", "url": "https://www.uniprot.org/uniprotkb/F1SBB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBB0-1", "url": "https://www.uniprot.org/uniprotkb/F1SBB0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNTEAEQQLLHHARNGNAEEVRHLLETIEKNEVIADINCKGRSKSNLGWTPLHLACYFGHRQVVQDLLKAGAEVNVLNDLGDTPLHRAAFTGRKELVMLLLEYNADTTVVNGNGQTAKEVTHDKEIRNMLEAVERTQQRKLEELLLAAAREGKTAELTALLNRPNPPDVNCSDQLGNTPLHCAAYRAHKQCALKLLKSGADPNLKNENDQKPLDLAQGAEMKHVLVGNKVIYKALKRYEGPLWKSSRFFGWRLFWVVLEHGVLSWYRKQPDAVHNIYRQGCKHLTQAVCTVKSTDSCLFFIKCFDDTIHGFRVPKNSLQQTREDWLEAIEEHSAYSTHYCSQDQLTDDEEEDEVSTVDVKDSLEKAQTCQQRLDREISSFLKMIKECDMTKEMLPSFLQKVEVVSEASRETCVALSDCLNLFTKQEGVRNFKLEQEQEKNKILSEALETLATEHHELEQSLVKGSPPLSILSEEEFYDALSGSESERSLSRLEVTAQSFEEEGEHLNSRNHRMSEGKDCGGGDALSNGIKKHRTSLPSPMFSRNDFSIWSILRKCIGMELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLADPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLEHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEITNHKTGDKCILNFKPCGLFGKELHKVEGYIQDKSKKKVCALYGKWTECLYSVDPATFDAYKKNDKKNTDEKKNSKQMSTSEESDEMPMPDSESVFVIPGSVLLWRIAPRPPNSAQMYNFTSFAMVLNEVDKEMESVIPKTDCRLRPDIRAMENGEIDQASEEKKRLEEKQRAARKNRSKSEEDWKTRWFHQGPNPYSGAQDWLYSGSYWDRNYFNLPDIY", "length": 949, "header": "tr|F1SBB0-1|F1SBB0_PIG Isoform 1 of Oxysterol-binding protein OS=Sus scrofa OX=9823 GN=OSBPL1A PE=1 SV=3 CANONICAL=F1SBB0-1" }, "isoforms": [ { "isoform_ac": "A0A287A8P5-1", "url": "https://www.uniprot.org/uniprotkb/F1SBB0/entry#A0A287A8P5-1", "sequence": { "sequence": "MNTEAEQQLLHHARNGNAEEVRHLLETIEKNEVIADINCKGRSKSNLGWTPLHLACYFGHRQVVQDLLKAGAEVNVLNDLGDTPLHRAAFTGRKELVMLLLEYNADTTVVNGNGQTAKEVTHDKEIRNMLEAVERTQQRKLEELLLAAAREGKTAELTALLNRPNPPDVNCSDQLGNTPLHCAAYRAHKQCALKLLKSGADPNLKNENDQKPLDLAQGAEMKHVLVGNKVIYKALKRYEGPLWKSSRFFGWRLFWVVLEHGVLSWYRKQPDAVHNIYRQGCKHLTQAVCTVKSTDSCLFFIKCFDDTIHGFRVPKNSLQQTREDWLEAIEEHSAYSTHYCSQDQLTDDEEEDEVSTVDVKDSLEVRNFKLEQEQEKNKILSEALETLATEHHELEQSLVKGSPPLSILSEEEFYDALSGSESERSLSRLEVTAQSFEEEGEHLNSRNHRMSEGKDCGGGDALSNGIKKHRTSLPSPMFSRNDFSIWSILRKCIGMELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLADPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLEHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEITNHKTGDKCILNFKPCGLFGKELHKVEGYIQDKSKKKVCALYGKWTECLYSVDPATFDAYKKNDKKNTDEKKNSKQMSTSEESDEMPMPDSESVFVIPGSVLLWRIAPRPPNSAQMYNFTSFAMVLNEVDKEMESVIPKTDCRLRPDIRAMENGEIDQASEEKKRLEEKQRAARKNRSKSEEDWKTRWFHQGPNPYSGAQDWLYSGSYWDRNYFNLPDIY", "length": 886, "header": "tr|A0A287A8P5-1|F1SBB0_PIG Computationally mapped isoform of Oxysterol-binding protein OS=Sus scrofa OX=9823 GN=OSBPL1A PE=1 SV=1 CANONICAL=F1SBB0-1" }, "locus": { "chromosome": "6", "start_pos": 109200842, "end_pos": 108998865, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063215.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063215.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040354.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040354.1" } ] } }, { "isoform_ac": "A0A5G2QF16-1", "url": "https://www.uniprot.org/uniprotkb/F1SBB0/entry#A0A5G2QF16-1", "sequence": { "sequence": "MNTEAEQQLLHHARNGNAEEVRHLLETIEKNEVIADINCKGRSKSNLGWTPLHLACYFGHRQVVQDLLKAGAEVNVLNDLGDTPLHRAAFTGRKELVMLLLEYNADTTVVNGNGQTAKEVTHDKEIRNMLEAVERTQQRKLEELLLAAAREGKTAELTALLNRPNPPDVNCSDQLGNTPLHCAAYRAHKQCALKLLKSGADPNLKNENDQKPLDLAQGAEMKHVLVGNKVIYKALKRYEGPLWKSSRFFGWRLFWVVLEHGVLSWYRKQPDAVHNIYRQGCKHLTQAVCTVKSTDSCLFFIKCFDDTIHGFRVPKNSLQQTREDWLEAIEEHSAYSTHYCSQDQLTDDEEEDEVSTVDVKDSLEKAQTCQQRLDREISSFLKMIKECDMTKEMLPSFLQKVEVVSEASRETCVALSDCLNLFTKQEGVRNFKLEQEQEKNKILSEALETLATEHHELEQSLVKGSPPLSILSEEEFYDALSGSESERSLSRLEVTAQSFEEEGEHLNSRNHRMSEGKDCGGGDALSNGIKKHRTSLPSPMFSRNDFSIWSILRKCIGMELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLADPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLEHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEITNHKTGDKCILNFKPCGLFGKELHKVEGYIQDKSKKKVCALYGKWTECLYSVDPATFDAYKKNDKKNTDEKKNSKQMSTSEESDEMPMPDSESVFVIPGSVLLWRIAPRPPNSAQMYNFTSFAMVLNEVDKEMESVIPKTDCRLRPDIRAMENGEIDQASEEKKRLEEKQRAARKNRSKSEEDWKTRWAGPSRGGVGRGQWRAAGHGQWQAVGRG", "length": 944, "header": "tr|A0A5G2QF16-1|F1SBB0_PIG Computationally mapped isoform of Oxysterol-binding protein OS=Sus scrofa OX=9823 GN=OSBPL1A PE=1 SV=1 CANONICAL=F1SBB0-1" }, "locus": { "chromosome": "6", "start_pos": 109200842, "end_pos": 109002102, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085775.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085775.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062789.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062789.1" } ] } }, { "isoform_ac": "A0A5G2QT92-1", "url": "https://www.uniprot.org/uniprotkb/F1SBB0/entry#A0A5G2QT92-1", "sequence": { "sequence": "MNTEAEQQLLHHARNGNAEEVRHLLETIEKNEVIADINCKGRSKSNLGWTPLHLACYFGHRQVVQDLLKAGAEVNVLNDLGDTPLHRAAFTGRKELVMLLLEYNADTTVVNGNGQTAKEVTHDKEIRNMLEAVERTQQRKLEELLLAAAREGKTAELTALLNRPNPPDVNCSDQLGNTPLHCAAYRAHKQCALKLLKSGADPNLKNENDQKPLDLAQGAEMKHVLVGNKVIYKALKRYEGPLWKSSRFFGWRLFWVVLEHGVLSWYRKQPDAVHNIYRQGCKHLTQAVCTVKSTDSCLFFIKCFDDTIHGFRVPKNSLQQTREDWLEAIEEHSAYSTHYCSQDQLTDDEEEDEVSTVDVKDSLEKMTNHQKAQTCQQRLDREISSFLKMIKECDMTKGSESERSLSRLEVTAQSFEEEGEHLNSRNHRMSEGKDCGGGDALSNGIKKHRTSLPSPMFSRNDFSIWSILRKCIGMELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLADPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLEHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEITNHKTGDKCILNFKPCGLFGKELHKVEGYIQDKSKKKVCALYGKWTECLYSVDPATFDAYKKNDKKNTDEKKNSKQMSTSEESDEMPMPDSESVFVIPGSVLLWRIAPRPPNSAQMYNFTSFAMVLNEVDKEMESVIPKTDCRLRPDIRAMENGEIDQASEEKKRLEEKQRAARKNRSKSEEDWKTRWFHQGPNPYSGAQDWLYSGSYWDRNYFNLPDIY", "length": 865, "header": "tr|A0A5G2QT92-1|F1SBB0_PIG Computationally mapped isoform of Oxysterol-binding protein OS=Sus scrofa OX=9823 GN=OSBPL1A PE=1 SV=1 CANONICAL=F1SBB0-1" }, "locus": { "chromosome": "6", "start_pos": 109200842, "end_pos": 108998865, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071058.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071058.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068053.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068053.1" } ] } }, { "isoform_ac": "F1SBB0-1", "url": "https://www.uniprot.org/uniprotkb/F1SBB0/entry#F1SBB0-1", "sequence": { "sequence": "MNTEAEQQLLHHARNGNAEEVRHLLETIEKNEVIADINCKGRSKSNLGWTPLHLACYFGHRQVVQDLLKAGAEVNVLNDLGDTPLHRAAFTGRKELVMLLLEYNADTTVVNGNGQTAKEVTHDKEIRNMLEAVERTQQRKLEELLLAAAREGKTAELTALLNRPNPPDVNCSDQLGNTPLHCAAYRAHKQCALKLLKSGADPNLKNENDQKPLDLAQGAEMKHVLVGNKVIYKALKRYEGPLWKSSRFFGWRLFWVVLEHGVLSWYRKQPDAVHNIYRQGCKHLTQAVCTVKSTDSCLFFIKCFDDTIHGFRVPKNSLQQTREDWLEAIEEHSAYSTHYCSQDQLTDDEEEDEVSTVDVKDSLEKAQTCQQRLDREISSFLKMIKECDMTKEMLPSFLQKVEVVSEASRETCVALSDCLNLFTKQEGVRNFKLEQEQEKNKILSEALETLATEHHELEQSLVKGSPPLSILSEEEFYDALSGSESERSLSRLEVTAQSFEEEGEHLNSRNHRMSEGKDCGGGDALSNGIKKHRTSLPSPMFSRNDFSIWSILRKCIGMELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLADPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLEHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEITNHKTGDKCILNFKPCGLFGKELHKVEGYIQDKSKKKVCALYGKWTECLYSVDPATFDAYKKNDKKNTDEKKNSKQMSTSEESDEMPMPDSESVFVIPGSVLLWRIAPRPPNSAQMYNFTSFAMVLNEVDKEMESVIPKTDCRLRPDIRAMENGEIDQASEEKKRLEEKQRAARKNRSKSEEDWKTRWFHQGPNPYSGAQDWLYSGSYWDRNYFNLPDIY", "length": 949, "header": "tr|F1SBB0-1|F1SBB0_PIG Isoform 1 of Oxysterol-binding protein OS=Sus scrofa OX=9823 GN=OSBPL1A PE=1 SV=3 CANONICAL=F1SBB0-1" }, "locus": { "chromosome": "6", "start_pos": 109200842, "end_pos": 108998865, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004111.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004111.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004019.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004019.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A8P5", "url": "https://www.uniprot.org/uniprotkb/A0A287A8P5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-192105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-192105", "resource": "Reactome", "description": "Synthesis of bile acids and bile salts" }, { "id": "R-SSC-2132295", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "resource": "Reactome", "description": "MHC class II antigen presentation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MG93-1", "protein_name": "Oxysterol-binding protein", "gene_name": "OSBPL1A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSTDAEQQLLHHARNGNAEEVRQLLETMERNEVIADINCKGRSKSNLGWTPLHLACYFGHRQVVQDLLKAGAEVNVLNDMGDTPLHRAAFTGRKELVMLLLEHNADTTVVNGNGQTAKEVTHDKEIRNMLEAVERTQQRKLEELLLAAAREGRTAELTALLNRPNPPDVNCSDQLGNTPLHCAAYRAHKQCALKLLKSGADPNLKNKNDQKPLDLAQGAEMKHVLVGNKIVHKALKRYEGPLWKSSRFFGWRLFWVVLEHGVLSWYRKQPDAVHNTYRQGCKHLTQAVCTVKSTDSCLFFIKCFDDTVHSFRVPKNSLQQTREDWLEAIEEHSAYSTHYCSQDQVTDDEEDDAVSAVDLKESLEKAQICQQRLDKEISNFLKMIKEGDMAQEMLPSFLQKVEVVAEASRETCVALSDCLHLFTKQEGVRNFKLEQEQEKNKILSEALATLATEHHELEQSLVKGSPPLSIFSEDEFYDALSEHPGDAERKGRTCVCLNTTPYCMKRSCPAIPNQADGSTLNTQAVGFSEIPEEEVTAGLFEGQNSESEGSLSRLEAVTAHSFDEEAEPPSSRQHRMSEGKDCGGGDALSNGIKKHRTSLPSPMFSRNDFSIWSILRKCIGMELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLADPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLEHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEITNHKTGDKCVLNFKPCGLFGKELHKVEGYIQDKSKKKLRALYGKWTECLYSVDPATFDAYKKNDKKNTEEKKNSKQMSASEESDEMPMPDSESVFVIPGSVLLWRIAPRPPNSAQMYNFTSFAMVLNEVDKEMESVIPKTDCRLRPDIRAMENGEIDQASEEKKRLEEKQRAARKNRSKSEEDWKTRWFHQGPNPYSGAQDWLYSGSYWDRNYFNLPDIY", "length": 1012 }, "evidence": [ { "id": "F1SBB0", "url": "https://omabrowser.org/oma/group/F1SBB0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8M9Q392-1", "protein_name": "Oxysterol-binding protein", "gene_name": "osbpl1a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEELDPEEQFLRDARNGNLEGIQRLLMCKIKEEANIDINCKGKSKSNHGWTPLHLACYFGHRDVVEALLKAGADANLPNNVGDTPLHKAAFTGRKEVVMLLLQHDACASVINGMAQIPKDITQSAEIKSMLEATERTEERKLEEQLLEAAREGAVSTLTRLLNLKKPPNINCTDLLGNTPLHCAAYRGQKQCAVKLLQHKANPNVKNKNDQTVFDLTNDAEMKQIIAGNVVKGMTRHVKMFEGPLWKSSRFFGWRSYWVVLQDGVLSWYPKQTDADSNTRRQGCKPLTQAHCMIKAKDNCYFTVKCFDDSVHHFKVTQKNNPEESRKMWLEAIEEHSAFSTHYCSQEPDSEEEEDNAVSVNELSESLQRAESCHQRLEKEVLSLLSMVKEDGLAEKIPVTVIQKLKDVCEASSESCSSLHRCLELFSRQEGARSVKLEQEVEKNKILSEALQTLATEHHELEQSVVKGSSPRSVLSDDEFYDALSDSDSEPVLSGFQTDGHSHEDHDDFTSELYCSIPGQHSGRMSQEERRGEEEDDEEVANVNGLRKHRTSLPAPMFSRNDFSIWSILRKCIGMELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHQANSSENSIERMKCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLDFRLISEQVSHHPPISAFHAEGLQKNFVFHGSIYPKLKFWGKSVEAEPKGIITLELPKHNEAYTWTNPTCCVHNIIVGQLWIEQYGNVEVINHRTGEKCCLNFKPCGLFGKELHKVEGYILDKSKKKVCVLYGKWTECMYLVDPATFETHKKNDKKASEEKKSSKQSQSSDSEETPQPGGDSLEVIPGSQLLWRIAPRPANSAQMYSFTSFALQLNELDKEIESVIPKTDSRLRPDIRAMENGDIDMASEEKKRLEEKQRAARKNRSKSDDEWKARNIASGPRWFHQGPNPHNGSQDWLFSNSYWDRDYSQVPDIY", "length": 972 }, "evidence": [ { "id": "F1SBB0", "url": "https://omabrowser.org/oma/group/F1SBB0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0XF90-1", "protein_name": "Oxysterol-binding protein", "gene_name": "OSBPL1A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSTEAEQQLLHDARNGNAEEVKQLLDTMSKGEIIFDINCKGRSKSNMGWTPLHLACYFGHAVVVEDLLKAGADVNVLNDMGDTPLHRAAFTGRKEVVMLLLQYNADTSIVNGSGETAKEVTHDKDIRNMLEAVERTQERKLEEELLGAARDGETGKLSALLNKPKPPDINCVDQMGNTPLHCAAYRAHKHCALKLLKNGADPKIRNKNDQTPLDLAQGAEMKLILGSKTGKVINKPLRRYEGLLWKSSRFFGWRLYWIVLEHGVLSWYRRQADAVNNEHRQGCKHLTQAVCTVKSTDSCFFSVRCFDDTVHRFKIPKNNLPSHTRESWLEAIEDHSAYSTHYCTQEQLSSDDEEDDTVSVTDLQETLKKAQACQQRLSKEISDFLAMVKSLDVTKGISSPLLQKVDVVSEVSQETCEALADCLNLFTKQEGVRNLKLEHEQEKNKILSEALETLATEHHELEQSLVKGSPPLSIISEEQFYDAVSDSESEKSLSGFETTTAYSLEDSMDSKDTITSSVSEEKVCGSGESMSNGIKKHRTSLPSPMFSRNDFSIWSILRKCIGMELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLSSTTERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELIRDDLGFRLLSEQVSHHPPISAFYAEGLNNDFVFHGSIYPKLKFWGKSVEAEPKGTMTLELLEHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEITNHKTGEKCVLSFKPCGLFGKELHKVEGYIQDKSKKKLCALYGKWTECLYSVDPATFEAYKKNDKKNAEEKKSSKQVSNTEEPDEMPLPDSESVYVIPGSILLWKITPRPPNSAQMYNFTSFAMALNELDKEMESVIPKTDCRLRPDIRAMENGEIDLASEEKKRLEEKQRTARKNRSKSEEDWKTRWFHQGPNPHTGTQDWLYSGNYWDRNYFNLPDIY", "length": 954 }, "evidence": [ { "id": "F1SBB0", "url": "https://omabrowser.org/oma/group/F1SBB0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8K4M9-1", "protein_name": "Oxysterol-binding protein-related protein 1", "gene_name": "Osbpl1a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNTEAEQQLLHHARNGNAEEVRKLLEAMARAEVVADIDCKGRSKSNLGWTPLHLACYFGHKQVVQDLLKAGAKVNMLNDMGDTPLHRAAFTGRKELVMLLLEYNADTTVVNGSGQTAKEATHDKEIRQMLEAVERTQQRKLEELLLGAAREGRTAEVSALLSRPNPPDVNCSDQLGNTPLHCAAYRAHKQCVLKLLRSGADPSLKNKNDQKPLDLAHGTEMKHILVGNKVVHKALKRFEGPLWKSSRFFGWKLFWVVLEHGVLSWYRKQPDAVHNSYRQGCKHLTQAVCTVKPTDGCLFSVRCFDDTVHGFRVPKNSLQQSREKWLEAIEEHSAYSTHYCSQDQVTDDEEEDVASAMDLKESLARAQTCQQRLDREIYNFLKMIKECDVAKDMLPSFLQKADVLSEASRETCVALSDCLNLFTKQEGVRNFKLEQEQEKNKILSEALETLATEHHELERSLVEGSPPVSILSEDEFYDALSGSESEGSLTCLEAVTARAFEENEVPANSGKHRMSEGKDCGGGDALSNGIKKHRTSLPSPMFSRNDFSIWSILRKCIGMELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSFSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLEHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGDKCVLNFKPCGLFGKELHKVEGYIQDKSKKKLCALYGKWTECLYSVDPATFDAYKKNDKKNTEEKKTSKQASTSEESDEMPVPDSESVFVIPGSALLWRIAPRPPNSAQMYNFTSFAMVLNEVDKEMETVIPKTDCRLRPDIRAMENGEIDQASEEKKRLEEKQRAARKNRSKSEEDWKTRWFHQGPNPYSGAQDWIYSGSYWDRNYFNLPDIY", "length": 950 }, "evidence": [ { "id": "F1SBB0", "url": "https://omabrowser.org/oma/group/F1SBB0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91XL9-1", "protein_name": "Oxysterol-binding protein-related protein 1", "gene_name": "Osbpl1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTEAEQQLLHHARNGNAEEVRKLLAAMARMEVVADIDCKGRSKSNLGWTPLHLACYFGHKQVVEDLLKAGAKVNMLNDMGDTPLHRAAFTGRKELVLLLLEYDADSTVVNGSGQTAKEATHDKEIRNMLEAVERTQQRKLEELLLGAAREGRTAEVSALLSRPNPPDVNCSDQLGNTPLHCAAYRAHKQCVLKLLRSGADPSLKNKNDQKPLDLAQGAEMKHILVGNKVVHKALKRYEGPLWKSSRFFGWKLFWVVLEHGVLSWYRKQPDAVHNSYRQGCKHLTQAVCTVKPTDSCLFSIRCFDDTVHCFRVPKNSVQQSREKWLEAIEEHSAYSTHYCSQDQVTDDEEEDVVSAMDLKESLARAQTCQQRLDREIYNFLKMIKECDVAKDMLPSFLQKADIVSEASRETCVALNDCLNLFTKQEGVRNFKLEQEQEKNKILSEALETLATEHHELERSLVEGSPPVSILSEEEFYDALSGSESEGSLTCLEAVTAHSFEENEVPGSSGKHRMSEGKDCGGGDALSNGIKKHRTSLPSPMFSRNDFSIWSILRKCIGMELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLDHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGDKCVLNFKPCGLFGKELHKVEGYIQDKSKKKLCALYGKWTECLYSVDPATFDAYKKNDKKNTEEKKNSKQTSSSEESDEMPVPDSESVFIIPGSVLLWRIAPRPPNSAQMYNFTSFAMVLNEVDKEMESVIPKTDCRLRPDIRAMENGEIDLASEEKKRLEEKQRAARKNRSKSEEDWKTRWFHQGPNPYSGAQDWIYSGSYWDRNYFNLPDIY", "length": 950 }, "evidence": [ { "id": "F1SBB0", "url": "https://omabrowser.org/oma/group/F1SBB0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BXW6-1", "protein_name": "Oxysterol-binding protein-related protein 1", "gene_name": "OSBPL1A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNTEAEQQLLHHARNGNAEEVRQLLETMARNEVIADINCKGRSKSNLGWTPLHLACYFGHRQVVQDLLKAGAEVNVLNDMGDTPLHRAAFTGRKELVMLLLEYNADTTIVNGSGQTAKEVTHAEEIRSMLEAVERTQQRKLEELLLAAAREGKTTELTALLNRPNPPDVNCSDQLGNTPLHCAAYRAHKQCALKLLRSGADPNLKNKNDQKPLDLAQGAEMKHILVGNKVIYKALKRYEGPLWKSSRFFGWRLFWVVLEHGVLSWYRKQPDAVHNIYRQGCKHLTQAVCTVKSTDSCLFFIKCFDDTIHGFRVPKNSLQQSREDWLEAIEEHSAYSTHYCSQDQLTDEEEEDTVSAADLKKSLEKAQSCQQRLDREISNFLKMIKECDMAKEMLPSFLQKVEVVSEASRETCVALTDCLNLFTKQEGVRNFKLEQEQEKNKILSEALETLATEHHELEQSLVKGSPPASILSEDEFYDALSDSESERSLSRLEAVTARSFEEEGEHLGSRKHRMSEEKDCGGGDALSNGIKKHRTSLPSPMFSRNDFSIWSILRKCIGMELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLEHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGDKCVLNFKPCGLFGKELHKVEGYIQDKSKKKLCALYGKWTECLYSVDPATFDAYKKNDKKNTEEKKNSKQMSTSEELDEMPVPDSESVFIIPGSVLLWRIAPRPPNSAQMYNFTSFAMVLNEVDKDMESVIPKTDCRLRPDIRAMENGEIDQASEEKKRLEEKQRAARKNRSKSEEDWKTRWFHQGPNPYNGAQDWIYSGSYWDRNYFNLPDIY", "length": 950 }, "evidence": [ { "id": "F1SBB0", "url": "https://omabrowser.org/oma/group/F1SBB0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "lipid transport", "id": "GO:0006869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006869", "evidence": [ { "database": "UniProtKB", "id": "F1SBB0", "url": "https://www.uniprot.org/uniprotkb/F1SBB0" } ], "pmid": "" }, { "name": "cholesterol homeostasis", "id": "GO:0042632", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042632", "evidence": [ { "database": "UniProtKB", "id": "F1SBB0", "url": "https://www.uniprot.org/uniprotkb/F1SBB0" } ], "pmid": "" }, { "name": "lysosome to ER cholesterol transport", "id": "GO:0090120", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090120", "evidence": [ { "database": "UniProtKB", "id": "F1SBB0", "url": "https://www.uniprot.org/uniprotkb/F1SBB0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "late endosome", "id": "GO:0005770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005770", "evidence": [ { "database": "UniProtKB", "id": "F1SBB0", "url": "https://www.uniprot.org/uniprotkb/F1SBB0" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SBB0", "url": "https://www.uniprot.org/uniprotkb/F1SBB0" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SBB0", "url": "https://www.uniprot.org/uniprotkb/F1SBB0" } ], "pmid": "" }, { "name": "perinuclear endoplasmic reticulum", "id": "GO:0097038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097038", "evidence": [ { "database": "UniProtKB", "id": "F1SBB0", "url": "https://www.uniprot.org/uniprotkb/F1SBB0" } ], "pmid": "" }, { "name": "endoplasmic reticulum-endosome membrane contact site", "id": "GO:0140284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140284", "evidence": [ { "database": "UniProtKB", "id": "F1SBB0", "url": "https://www.uniprot.org/uniprotkb/F1SBB0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "F1SBB0", "url": "https://www.uniprot.org/uniprotkb/F1SBB0" } ], "pmid": "" }, { "name": "cholesterol binding", "id": "GO:0015485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015485", "evidence": [ { "database": "UniProtKB", "id": "F1SBB0", "url": "https://www.uniprot.org/uniprotkb/F1SBB0" } ], "pmid": "" }, { "name": "sterol sensor activity", "id": "GO:0032935", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032935", "evidence": [ { "database": "UniProtKB", "id": "F1SBB0", "url": "https://www.uniprot.org/uniprotkb/F1SBB0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" }, { "start_pos": 847, "end_pos": 849, "annotation": "n_glycosylation_sequon" }, { "start_pos": 905, "end_pos": 907, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBB0" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 235, "end_pos": 334, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 170, "end_pos": 172 }, { "start_pos": 847, "end_pos": 849 }, { "start_pos": 905, "end_pos": 907 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SF56-1", "uniprot_ac": "F1SF56", "uniprot_id": "F1SF56_PIG", "mass": { "chemical_mass": 60179.0, "monoisotopic_mass": 60179.0 }, "refseq": { "ac": "XP_005659284", "name": "heat shock factor protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659284" }, "gene_names": [ { "name": "HSF2", "type": "recommended", "evidence": [ { "id": "F1SF56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF56" } ] }, { "name": "HSF2", "type": "synonym", "evidence": [ { "id": "XP_005659284", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659284" } ] } ], "protein_names": [ { "name": "Heat shock transcription factor 2", "type": "synonym", "evidence": [ { "id": "F1SF56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF56/entry#names_and_taxonomy" } ] }, { "name": "heat shock factor protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005659284", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659284" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SF56", "url": "https://www.uniprot.org/uniprotkb/F1SF56" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HSF2", "url": "https://www.uniprot.org/uniprotkb/F1SF56", "locus": { "chromosome": "1", "start_pos": 40147164, "end_pos": 40180297, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004238", "url": "https://www.ensembl.org/id/ENSSSCG00000004238" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004238", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004238", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154234", "url": "https://www.ncbi.nlm.nih.gov/gene/100154234", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010542", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010542", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154234", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154234", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GKQCGID", "url": "https://omabrowser.org/oma/group/GKQCGID/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AEZ2", "url": "https://www.orthodb.org/?gene=A0A287AEZ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SF56", "url": "https://www.orthodb.org/?gene=F1SF56", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10015", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10015", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10015:SF185", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10015:SF185", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00447", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00447", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06546", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06546", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005659284", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659284", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AEZ2", "url": "https://www.uniprot.org/uniprotkb/A0A287AEZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF56", "url": "https://www.uniprot.org/uniprotkb/F1SF56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF56-1", "url": "https://www.uniprot.org/uniprotkb/F1SF56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIVKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVSLKRKRPLLLNTNGAQKKNLFQHIVKEPADNHHHKVPHSRSEGLKPRERISDDIIIYDVTDDNADEENIPVIPETNEDVISDPSNCSQYPDIVIVEDDNEDEYAPVIQSGDQSEPARESLSSGSDGTSPLMSSAIQLNGSSSLTTEDPVTMMDSILNDNINLLGKVELLDYLDSIDCSLEDFQAMLSGRQFSIDPDLLVDLFTSSVQMNPTDYINNTKSENKGLETTKSSVVQPVSEEGRKSKPKTDKQLIQYTAFPLLAFLDGNPASAVEQGNTASSEVMSSVDKPIEVDELLDSSLDPEPTQSKLVRLEPLTEAEASEATLFYLCELAPAPLDSDMPLLDS", "length": 535, "header": "tr|F1SF56-1|F1SF56_PIG Isoform 1 of Heat shock transcription factor 2 OS=Sus scrofa OX=9823 GN=HSF2 PE=3 SV=3 CANONICAL=F1SF56-1" }, "isoforms": [ { "isoform_ac": "A0A287AEZ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SF56/entry#A0A287AEZ2-1", "sequence": { "sequence": "MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIVKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVSLKRKRPLLLNTNGAQKKNLFQHIVKEPADNHHHKVPHSRSEGLKPRERISDDIIIYDVTDDNADEENIPVIPETNEDVISDPSNCSQYPDIVIVEDDNEDEYAPVIQSGDQSEPARESLSSGSDGTSPLMSSAIQLNGSSSLTTEDPVTMMDSILNDNINLLGKVELLDYLDSIDCSLEDFQAMLSGRQFSIDPDLLVDSENKGLETTKSSVVQPVSEEGRKSKPKTDKQLIQYTAFPLLAFLDGNPASAVEQGNTASSEVMSSVDKPIEVDELLDSSLDPEPTQSKLVRLEPLTEAEASEATLFYLCELAPAPLDSDMPLLDS", "length": 517, "header": "tr|A0A287AEZ2-1|F1SF56_PIG Computationally mapped isoform of Heat shock transcription factor 2 OS=Sus scrofa OX=9823 GN=HSF2 PE=3 SV=1 CANONICAL=F1SF56-1" }, "locus": { "chromosome": "1", "start_pos": 40180176, "end_pos": 40147999, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057546.1", "url": "https://www.ensembl.org/id/ENSSSCT00000057546.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042559.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042559.1" } ] } }, { "isoform_ac": "F1SF56-1", "url": "https://www.uniprot.org/uniprotkb/F1SF56/entry#F1SF56-1", "sequence": { "sequence": "MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIVKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVSLKRKRPLLLNTNGAQKKNLFQHIVKEPADNHHHKVPHSRSEGLKPRERISDDIIIYDVTDDNADEENIPVIPETNEDVISDPSNCSQYPDIVIVEDDNEDEYAPVIQSGDQSEPARESLSSGSDGTSPLMSSAIQLNGSSSLTTEDPVTMMDSILNDNINLLGKVELLDYLDSIDCSLEDFQAMLSGRQFSIDPDLLVDLFTSSVQMNPTDYINNTKSENKGLETTKSSVVQPVSEEGRKSKPKTDKQLIQYTAFPLLAFLDGNPASAVEQGNTASSEVMSSVDKPIEVDELLDSSLDPEPTQSKLVRLEPLTEAEASEATLFYLCELAPAPLDSDMPLLDS", "length": 535, "header": "tr|F1SF56-1|F1SF56_PIG Isoform 1 of Heat shock transcription factor 2 OS=Sus scrofa OX=9823 GN=HSF2 PE=3 SV=3 CANONICAL=F1SF56-1" }, "locus": { "chromosome": "1", "start_pos": 40180176, "end_pos": 40147999, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004683.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004683.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004576.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004576.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AEZ2", "url": "https://www.uniprot.org/uniprotkb/A0A287AEZ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154234", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154234", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YGA5-1", "protein_name": "Heat shock transcription factor 2", "gene_name": "HSF2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRGGAEWRWLPSSRAPPPVRRRRSRATMKQEPQQQQPAQQPPPAGAGVPAFLSKLWALVGEAPSNQLITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHVDSGIVKLERDGLVEFQHPYFKQGREDLLEHIKRKVSSSRPEENKISQEDLSKIISSAQKVEIKQETIESRLSALKRENESLWREVAELRAKHLKQQQVIRKIVQFIVTLVQNNQLVSLKRKRPLLLNTNGPTKSNVFQQIVKEPADNNHVPLNRTEGLKQREQISDDIIIYDVTEDVADEENTMVDEENAPITPETNEDTTSDSSNCSRSPDIVIVEDDNEEEYAPVIQGDKSTESVAVSANDPLSPVSDSTSPLMSSAVQLNNQSTLTAEDPVSMMDSILNENGVISQNINLLGKVELLDYLDSIDCSLEDFQAMLSGRQFSIDPDLLFDMETKGIETTKSNAGPAASQETQVSKPKSDKQLIQYTAFPLLAFLDGNPGSTVESGSSATETPSSVDKPLEVDELLESSLDPEPTQSKLVRLEPLTEAEASEATLFYLCELAPAPMDTDMPFLDN", "length": 572 }, "evidence": [ { "id": "F1SF56", "url": "https://omabrowser.org/oma/group/F1SF56/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0L2J2-1", "protein_name": "Heat shock transcription factor 2", "gene_name": "Hsf2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIESGIVKQERDGPVEFQHPHFKQGQDDLLENIKRKVSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVSLKRKRPLLLNTNGAPKKNLFQHIVKEPTDNHHHKVPHSRTEGLKSRERISDDIIIYDVTEDNVDEENIPVIPETNEDVVVDPSSQYPDIVIVEDDNEDEYAPVIQSGEQSEPARVGSASSSSPLMSSAVQLNGSSNLTSEDPVTMMDSILNDNINLLGKVELLDYLDSIDCSLEDFQAMLSGRQFSIDPDLLVDLFTSSVQMNPTDYINNTKSENKGLEATKNSVVQQVSEEGRKSKSKPDKQLIQYTAFPLLAFLDGNPASAVEQGTTTASSEVVPSVDKPIEVDELLDSNLDQEPTQSKLVRLEPLTEAEASEATLFYLCELAPAPLDSDMPLLDS", "length": 531 }, "evidence": [ { "id": "F1SF56", "url": "https://omabrowser.org/oma/group/F1SF56/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P38533-1", "protein_name": "Heat shock factor protein 2", "gene_name": "Hsf2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIESGIIKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVSLKRKRPLLLNTNGAPKKNLYQHIVKEPTDNHHHKVPHSRTEGLKSRERISDDIIIYDVTDDNVDEENIPVIPETNEDVVVDSSNQYPDIVIVEDDNEDEYAPVIQSGEQSEPAREPLRVGSAGSSSPLMSSAVQLNGSSSLTSEDPVTMMDSILNDNINLLGKVELLDYLDSIDCSLEDFQAMLSGRQFSIDPDLLVDLFTSSVQMNPTDNIKYTKSENKGLEATKSSVVQHVSEEGRKSKSKPDKQLIQYTAFPLLAFLDGNSASAIEQGSTTASSEVVPSVDKPIEVDELLDSSLDPEPTQSKLVRLEPLTEAEASEATLFYLCELAPAPLDSDMPLLDS", "length": 535 }, "evidence": [ { "id": "F1SF56", "url": "https://omabrowser.org/oma/group/F1SF56/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q03933-1", "protein_name": "Heat shock factor protein 2", "gene_name": "HSF2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIVKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVSLKRKRPLLLNTNGAQKKNLFQHIVKEPTDNHHHKVPHSRTEGLKPRERISDDIIIYDVTDDNADEENIPVIPETNEDVISDPSNCSQYPDIVIVEDDNEDEYAPVIQSGEQNEPARESLSSGSDGSSPLMSSAVQLNGSSSLTSEDPVTMMDSILNDNINLLGKVELLDYLDSIDCSLEDFQAMLSGRQFSIDPDLLVDLFTSSVQMNPTDYINNTKSENKGLETTKNNVVQPVSEEGRKSKSKPDKQLIQYTAFPLLAFLDGNPASSVEQASTTASSEVLSSVDKPIEVDELLDSSLDPEPTQSKLVRLEPLTEAEASEATLFYLCELAPAPLDSDMPLLDS", "length": 536 }, "evidence": [ { "id": "F1SF56", "url": "https://omabrowser.org/oma/group/F1SF56/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1SF56", "url": "https://www.uniprot.org/uniprotkb/F1SF56" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "F1SF56", "url": "https://www.uniprot.org/uniprotkb/F1SF56" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SF56", "url": "https://www.uniprot.org/uniprotkb/F1SF56" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SF56", "url": "https://www.uniprot.org/uniprotkb/F1SF56" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SF56", "url": "https://www.uniprot.org/uniprotkb/F1SF56" } ], "pmid": "" }, { "name": "RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding", "id": "GO:0001162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001162", "evidence": [ { "database": "UniProtKB", "id": "F1SF56", "url": "https://www.uniprot.org/uniprotkb/F1SF56" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SF56", "url": "https://www.uniprot.org/uniprotkb/F1SF56" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SF56", "url": "https://www.uniprot.org/uniprotkb/F1SF56" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SF56", "url": "https://www.uniprot.org/uniprotkb/F1SF56" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SF56", "url": "https://www.uniprot.org/uniprotkb/F1SF56" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 330, "end_pos": 332, "annotation": "n_glycosylation_sequon" }, { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S8E6-1", "uniprot_ac": "F1S8E6", "uniprot_id": "F1S8E6_PIG", "mass": { "chemical_mass": 33037.0, "monoisotopic_mass": 33037.0 }, "refseq": { "ac": "XP_003123090", "name": "deoxyhypusine hydroxylase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123090" }, "gene_names": [ { "name": "DOHH", "type": "recommended", "evidence": [ { "id": "F1S8E6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8E6" } ] }, { "name": "DOHH", "type": "synonym", "evidence": [ { "id": "XP_003123090", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123090" } ] } ], "protein_names": [ { "name": "Deoxyhypusine hydroxylase", "type": "recommended", "evidence": [ { "id": "F1S8E6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8E6/entry#names_and_taxonomy" } ] }, { "name": "1.14.99.29", "type": "synonym", "evidence": [ { "id": "F1S8E6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8E6/entry#names_and_taxonomy" } ] }, { "name": "DOHH", "type": "synonym", "evidence": [ { "id": "F1S8E6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8E6/entry#names_and_taxonomy" } ] }, { "name": "Deoxyhypusine dioxygenase", "type": "synonym", "evidence": [ { "id": "F1S8E6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8E6/entry#names_and_taxonomy" } ] }, { "name": "Deoxyhypusine monooxygenase", "type": "synonym", "evidence": [ { "id": "F1S8E6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8E6/entry#names_and_taxonomy" } ] }, { "name": "deoxyhypusine hydroxylase", "type": "synonym", "evidence": [ { "id": "XP_003123090", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123090" } ] } ], "function": [ { "annotation": "Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate produced by deoxyhypusine synthase/DHPS on a critical lysine of the eukaryotic translation initiation factor 5A/eIF-5A. This is the second step of the post-translational modification of that lysine into an unusual amino acid residue named hypusine. Hypusination is unique to mature eIF-5A factor and is essential for its function.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF73", "url": "https://www.uniprot.org/uniprotkb/A0A287AF73#function" }, { "database": "UniProtKB", "id": "ARBA00045876", "url": "https://www.uniprot.org/uniprotkb/ARBA00045876#function" }, { "database": "UniProtKB", "id": "A0A5G2QY17", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY17#function" }, { "database": "UniProtKB", "id": "F1S8E6", "url": "https://www.uniprot.org/uniprotkb/F1S8E6#function" } ] }, { "annotation": "Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF73", "url": "https://www.uniprot.org/uniprotkb/A0A287AF73#function" }, { "database": "HAMAP", "id": "MF_03101", "url": "https://hamap.expasy.org/signature/MF_03101" }, { "database": "UniProtKB", "id": "A0A5G2QY17", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY17#function" }, { "database": "UniProtKB", "id": "F1S8E6", "url": "https://www.uniprot.org/uniprotkb/F1S8E6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S8E6", "url": "https://www.uniprot.org/uniprotkb/F1S8E6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DOHH", "url": "https://www.uniprot.org/uniprotkb/F1S8E6", "locus": { "chromosome": "2", "start_pos": 75173439, "end_pos": 75164787, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013478", "url": "https://www.ensembl.org/id/ENSSSCG00000013478" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013478", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013478", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519411", "url": "https://www.ncbi.nlm.nih.gov/gene/100519411", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004155", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004155", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027517", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027517", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519411", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519411", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LQEPCSI", "url": "https://omabrowser.org/oma/group/LQEPCSI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S8E6", "url": "https://www.orthodb.org/?gene=F1S8E6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12697", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12697", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12697:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12697:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03130", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03130", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-204626", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204626", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003123090", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123090", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "14101", "url": "https://www.rhea-db.org/rhea/14101", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AF73", "url": "https://www.uniprot.org/uniprotkb/A0A287AF73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AF73-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AF73-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY17", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY17-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY17-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8E6", "url": "https://www.uniprot.org/uniprotkb/F1S8E6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8E6-1", "url": "https://www.uniprot.org/uniprotkb/F1S8E6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVTEQEVEAVGKMLVDPGQPLQARFRALFTLRGLGGPGAITWISRAFGDDSALLKHELAYCLGQMQDSRAIPVLVDVLRDTCQEPMVRHEAGEALGAIGNPEVLEILKQYSTDPVVEVAETCQLAVRRLEWLQQHSGEPVAQGPYLSVDPAPPAQERDVGQLREMLLDEAQPLFDRYRAMFALRDIGGEEAALALAEGLLCGSALFRHEIGYVLGQLQHEAAVPHLMAALARPAESPMVRHECAEALGAIARPACLAALRAYAADPERVVRESCEVALDMYEYETGPAFQYADGLEQLRAPPS", "length": 303, "header": "tr|F1S8E6-1|F1S8E6_PIG Isoform 1 of Deoxyhypusine hydroxylase OS=Sus scrofa OX=9823 GN=DOHH PE=1 SV=1 CANONICAL=F1S8E6-1" }, "isoforms": [ { "isoform_ac": "A0A287AF73-1", "url": "https://www.uniprot.org/uniprotkb/F1S8E6/entry#A0A287AF73-1", "sequence": { "sequence": "MVTEQEVEAVGKMLVDPGQPLQARFRALFTLRGLGGPGAITWISRAFGDDSALLKHELAYCLGQMQDSRAIPVLVDVLRDTCQEPMVRHEAGEALGAIGNPEVLEILKQYSTDPVVEVAETCQLAVRRLEWLQQHSGEPVAQGPYLSVDPAPPAQERDVGQLREMLLDEAQPLFDRYRAMFALRDIGGEEAALALAEGLLCGSALFRHEIGYVLGQLQHEALPCGPTRRTPSAWCGRAVRWPWTCTSTRRGQPSSTQTAWSSCAHPPPEAALGSPLRTSCLNDLTYKPRWSELHLAACLLAALAS", "length": 305, "header": "tr|A0A287AF73-1|F1S8E6_PIG Computationally mapped isoform of Deoxyhypusine hydroxylase OS=Sus scrofa OX=9823 GN=DOHH PE=1 SV=1 CANONICAL=F1S8E6-1" }, "locus": { "chromosome": "2", "start_pos": 75173082, "end_pos": 75167980, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054241.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054241.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042491.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042491.2" } ] } }, { "isoform_ac": "A0A5G2QY17-1", "url": "https://www.uniprot.org/uniprotkb/F1S8E6/entry#A0A5G2QY17-1", "sequence": { "sequence": "MVTEQEVEAVGKMLVDPGQPLQARFRALFTLRGLGGPGAITWISRAFGDDSALLKHELAYCLGQMQDSRAIPVLVDVLRDTCQEPMVRHEAGERWVQVAETCQLAVRRLEWLQQHSGEPVAQGPYLSVDPAPPAQERDVGQLREMLLDEAQPLFDRYRAMFALRDIGGEEAALALAEGLLCGSALFRHEIGYVLGQLQHEAAVPHLMAALARPAESPMVRHECAEALGAIARPACLAALRAYAADPERVVRESCEVALDMYEYETGPAFQYADGLEQLRAPPS", "length": 283, "header": "tr|A0A5G2QY17-1|F1S8E6_PIG Computationally mapped isoform of Deoxyhypusine hydroxylase OS=Sus scrofa OX=9823 GN=DOHH PE=1 SV=1 CANONICAL=F1S8E6-1" }, "locus": { "chromosome": "2", "start_pos": 75172970, "end_pos": 75167980, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079585.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079585.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063098.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063098.1" } ] } }, { "isoform_ac": "F1S8E6-1", "url": "https://www.uniprot.org/uniprotkb/F1S8E6/entry#F1S8E6-1", "sequence": { "sequence": "MVTEQEVEAVGKMLVDPGQPLQARFRALFTLRGLGGPGAITWISRAFGDDSALLKHELAYCLGQMQDSRAIPVLVDVLRDTCQEPMVRHEAGEALGAIGNPEVLEILKQYSTDPVVEVAETCQLAVRRLEWLQQHSGEPVAQGPYLSVDPAPPAQERDVGQLREMLLDEAQPLFDRYRAMFALRDIGGEEAALALAEGLLCGSALFRHEIGYVLGQLQHEAAVPHLMAALARPAESPMVRHECAEALGAIARPACLAALRAYAADPERVVRESCEVALDMYEYETGPAFQYADGLEQLRAPPS", "length": 303, "header": "tr|F1S8E6-1|F1S8E6_PIG Isoform 1 of Deoxyhypusine hydroxylase OS=Sus scrofa OX=9823 GN=DOHH PE=1 SV=1 CANONICAL=F1S8E6-1" }, "locus": { "chromosome": "2", "start_pos": 75172970, "end_pos": 75167980, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014724.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014724.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014326.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014326.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AF73", "url": "https://www.uniprot.org/uniprotkb/A0A287AF73" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519411", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519411", "resource": "KEGG Pathway" }, { "id": "R-SSC-204626", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204626", "resource": "Reactome", "description": "Hypusine synthesis from eIF5A-lysine" } ], "orthologs": [ { "uniprot_canonical_ac": "P47120-1", "protein_name": "Deoxyhypusine hydroxylase", "gene_name": "LIA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSTNFEKHFQENVDECTLEQLRDILVNKSGKTVLANRFRALFNLKTVAEEFATKPEEAKKAIEYIAESFVNDKSELLKHEVAYVLGQTKNLDAAPTLRHVMLDQNQEPMVRHEAAEALGALGDKDSLDDLNKAAKEDPHVAVRETCELAINRINWTHGGAKDKENLQQSLYSSIDPAPPLPLEKDATIPELQALLNDPKQPLFQRYRAMFRLRDIGTDEAILALATGFSAESSLFKHEIAYVFGQIGSPAAVPSLIEVLGRKEEAPMVRHEAAEALGAIASPEVVDVLKSYLNDEVDVVRESCIVALDMYDYENSNELEYAPTAN", "length": 325 }, "evidence": [ { "id": "F1S8E6", "url": "https://omabrowser.org/oma/group/F1S8E6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0VC53-1", "protein_name": "Deoxyhypusine hydroxylase", "gene_name": "DOHH", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVTEQEVEAVGQTLVDPGQPLQARFRALFTLRGLGGPVAISWISRAFDDDSALLKHELAYCLGQMQDRRAIPVLLDVLRDTRQEPMVRHEAGEALGAIGDPEVLEILKQYSTDPVVEVAETCQLAVRRLEWLQQHGGESAVRGPYLSVDPAPPAEERDLGQLREALLDEARPLFDRYRAMFALRDAGGKEAALALAEGLRCGSALFRHEIGYVLGQMQHEAAVPQLAAALAQPTENPMVRHECAEALGAIARPACLAALRAHVADPERVVRESCEVALDMYEYETGSTFQYADGLERLRSPLS", "length": 303 }, "evidence": [ { "id": "F1S8E6", "url": "https://omabrowser.org/oma/group/F1S8E6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q556G4-1", "protein_name": "Deoxyhypusine hydroxylase", "gene_name": "dohh-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVVVTEEIVNGLKETLTDVSQPIAKRFRSLFTLRNLNGPLCIDAMASALNDKSALLRHEIAYCLGQMEDEYALKVLIDLVKNSDEHPMVRHEAAEALGAIGSESAHKTLKEYSNDPVREVSETCQLALSRVEWYEKNKPETEEDKMYMSVDPAPPLKKGSVSRDELRSKFLDSNLDIFNRYRALFSLRDIGDEQSVLALCDGLKDQSSALLRHEVAFVLGQLQHRVAIDPLTTCVLDESENAMVRHEAAEALGAIASTETIPLLEKLLQDKEPIVSESCAVALDVTEYFNNTESFQYADGIKILLEKNLVDQQQK", "length": 315 }, "evidence": [ { "id": "F1S8E6", "url": "https://omabrowser.org/oma/group/F1S8E6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5PPJ4-1", "protein_name": "Deoxyhypusine hydroxylase", "gene_name": "Dohh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVTEQEVEAIGKTLVDSTQPLQARFRALFTLRGLGGPDAISWISRGFEDSSALLKHELAYCLGQMRDPRAIPVLVSVLQDRNQEPMVRHEAGEALGAIGNPKVLGLLKQYSTDPVVEVAETCQLAVRRLEWLQQHPGEATCAGPYLSVDPAPPAAEGDVGRLRETLLDEAQPLFERYRAMFALRNVGGKEAALALAEGLKCGSALFRHEVGYVLGQLQHEAAVSELAATLARTTESPMVRHECAEALGAIARPACLAALREYITDPERVVRESCEVALDMYEYENGQDFQYADGLERLRPPP", "length": 302 }, "evidence": [ { "id": "F1S8E6", "url": "https://omabrowser.org/oma/group/F1S8E6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5ZIP3-1", "protein_name": "Deoxyhypusine hydroxylase", "gene_name": "DOHH", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVTEEEVTAIGRTLLDAAQPLPARFRALFTLRNLGGPAAIDCIVRGFADSSALLKHELAFCLGQMRDRAAIPALLGVLQDSQQEPMVRHEAGEALGAIGDPEVLDVLRRYSEDPVVEVAETCQLAVRRLEWLQEHGEEPGSSPYRSVDPAPPAEETDVATLRAVLLDESRPLFDRYRAMFALRNLGGRDAVLALADGLRAGSALFRHEIGYVLGQMQDEACVPQLTAALRSRAENPMVRHECAEALGSIARPSCLETLRAFAQDEERVVRESCEVALDMYEYENGPQFQYADGLCRLQA", "length": 299 }, "evidence": [ { "id": "F1S8E6", "url": "https://omabrowser.org/oma/group/F1S8E6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q94JW0-1", "protein_name": "Deoxyhypusine hydroxylase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MESNGSVSSMVNLEKFLCERLVDQSQPISERFRALFSLRNLKGPGPRNALILASRDSSNLLAHEAAFALGQMQDAEAIPALESVLNDMSLHPIVRHEAAEALGAIGLAGNVNILKKSLSSDPAQEVRETCELALKRIEDMSNVDAENQSSTTEKSPFMSVDPAGPAASFSSVHQLRQVLLDETKGMYERYAALFALRNHGGEEAVSAIVDSLSASSALLRHEVAYVLGQLQSKTALATLSKVLRDVNEHPMVRHEAAEALGSIADEQSIALLEEFSKDPEPIVAQSCEVALSMLEFENSGKSFEFFFTQDPLVH", "length": 314 }, "evidence": [ { "id": "F1S8E6", "url": "https://omabrowser.org/oma/group/F1S8E6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q99LN9-1", "protein_name": "Deoxyhypusine hydroxylase", "gene_name": "Dohh", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVTEQEIEAIGKTLVDPKQPLQARFRALFTLRGLGGPDAISWISRGFEDSSALLKHELAYCLGQMRDARAIPVLADVLQDTSQEPMVRHEAGEALGAIGNPEVLGLLKQYSTDPVVEVAETCQLAVGRLEWLQQHPGEATCAGPYLSVDPAPPAAEQDVGRLREALLDEARPLFERYRAMFALRNVGGKEAALALAEGLQCGSALFRHEVGYVLGQLQHEAAVPGLAATLARTTESPMVRHECAEALGAIARPACLAALREHIEDPEQVVRESCEVALDMYEYESSQDFQYADGLERLRPPP", "length": 302 }, "evidence": [ { "id": "F1S8E6", "url": "https://omabrowser.org/oma/group/F1S8E6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BU89-1", "protein_name": "Deoxyhypusine hydroxylase", "gene_name": "DOHH", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVTEQEVDAIGQTLVDPKQPLQARFRALFTLRGLGGPGAIAWISQAFDDDSALLKHELAYCLGQMQDARAIPMLVDVLQDTRQEPMVRHEAGEALGAIGDPEVLEILKQYSSDPVIEVAETCQLAVRRLEWLQQHGGEPAAGPYLSVDPAPPAEERDVGRLREALLDESRPLFERYRAMFALRNAGGEEAALALAEGLHCGSALFRHEVGYVLGQLQHEAAVPQLAAALARCTENPMVRHECAEALGAIARPACLAALQAHADDPERVVRESCEVALDMYEHETGRAFQYADGLEQLRGAPS", "length": 302 }, "evidence": [ { "id": "F1S8E6", "url": "https://omabrowser.org/oma/group/F1S8E6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9V9U4-1", "protein_name": "Deoxyhypusine hydroxylase", "gene_name": "nero", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MVSQQQIEAIGGVLNNKERPLKERFRALFTLKNIGGGAAIEAISKAFDDDSALLKHELAYCLGQMQDAQALDILTKVLKDTTQEPMVRHEAAEAMGAIGHPDVLPILEEYKQDPVVEVAETCAIALDRVRWLQSGQKVDDSNPYASVDPSPPTAGDKSVTELKAIYLDAQQSLFDRYRAMFSLRNLRTEESVLAIAEGLKDSSALFRHEVAFVLGQLQEPCSIPFLQENLEDRLENEMVRHECAEALGAIATEDCIQILNRYAEDDKRVVKESCVIALDMCEYENSPEFQYADGLAKLDATK", "length": 302 }, "evidence": [ { "id": "F1S8E6", "url": "https://omabrowser.org/oma/group/F1S8E6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "deoxyhypusine monooxygenase activity", "id": "GO:0019135", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019135", "evidence": [ { "database": "UniProtKB", "id": "F1S8E6", "url": "https://www.uniprot.org/uniprotkb/F1S8E6" } ], "pmid": "" }, { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "F1S8E6", "url": "https://www.uniprot.org/uniprotkb/F1S8E6" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1S8E6", "url": "https://www.uniprot.org/uniprotkb/F1S8E6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "14101", "name": "", "equation": "[eIF5A protein]-deoxyhypusine + AH2 + O2 = [eIF5A protein]-hypusine + A + H2O", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "14101", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/14101" } ] }, { "id": "R-SSC-204662", "name": "DOHH:Fe2+ hydroxylates Dhp-K50-EIF5A to form Hyp-K50-EIF5A", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-204662", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204662" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "A0A5G2QY17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY17#function" }, { "id": "A0A5G2QY17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY17" }, { "id": "MF_03101", "database": "HAMAP", "url": "https://hamap.expasy.org/signature/MF_03101" } ], "binding_site_uniprot": 188, "amino_acid": "Gly", "chebi_lig_id": "CHEBI_24875", "ligand": "Fe cation", "ligand_label": "2", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 188, 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SC82-1", "uniprot_ac": "F1SC82", "uniprot_id": "F1SC82_PIG", "mass": { "chemical_mass": 234516.0, "monoisotopic_mass": 234516.0 }, "refseq": { "ac": "XP_020929514", "name": "myoferlin isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929514" }, "gene_names": [ { "name": "MYOF", "type": "recommended", "evidence": [ { "id": "F1SC82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC82" } ] }, { "name": "MYOF", "type": "synonym", "evidence": [ { "id": "XP_020929514", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929514" } ] } ], "protein_names": [ { "name": "Myoferlin", "type": "recommended", "evidence": [ { "id": "F1SC82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC82/entry#names_and_taxonomy" } ] }, { "name": "Fer-1-like protein 3", "type": "synonym", "evidence": [ { "id": "F1SC82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC82/entry#names_and_taxonomy" } ] }, { "name": "myoferlin isoform X4", "type": "synonym", "evidence": [ { "id": "XP_020929514", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929514" } ] } ], "function": [ { "annotation": "Calcium/phospholipid-binding protein that plays a role in the plasmalemma repair mechanism of endothelial cells that permits rapid resealing of membranes disrupted by mechanical stress. Involved in endocytic recycling. Implicated in VEGF signal transduction by regulating the levels of the receptor KDR.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R9Y7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9Y7#function" }, { "database": "UniProtKB", "id": "ARBA00057975", "url": "https://www.uniprot.org/uniprotkb/ARBA00057975#function" }, { "database": "UniProtKB", "id": "A0A287AHC3", "url": "https://www.uniprot.org/uniprotkb/A0A287AHC3#function" }, { "database": "UniProtKB", "id": "A0A287B6F4", "url": "https://www.uniprot.org/uniprotkb/A0A287B6F4#function" }, { "database": "UniProtKB", "id": "A0A287BPY3", "url": "https://www.uniprot.org/uniprotkb/A0A287BPY3#function" }, { "database": "UniProtKB", "id": "A0A5G2Q8T2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T2#function" }, { "database": "UniProtKB", "id": "F1SC82", "url": "https://www.uniprot.org/uniprotkb/F1SC82#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SC82", "url": "https://www.uniprot.org/uniprotkb/F1SC82" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYOF", "url": "https://www.uniprot.org/uniprotkb/F1SC82", "locus": { "chromosome": "14", "start_pos": 104770515, "end_pos": 104941109, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010476", "url": "https://www.ensembl.org/id/ENSSSCG00000010476" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010476", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010476", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04011", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04011", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04017", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04017", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04018", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04018", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04037", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04037", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08373", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08373", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08374", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08374", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154898", "url": "https://www.ncbi.nlm.nih.gov/gene/100154898", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006614", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006614", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012560", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012560", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012561", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012561", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012968", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012968", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037720", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037720", "database": "InterPro", "categories": [ "Protein 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"InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154898", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154898", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B6F4", "url": "https://www.orthodb.org/?gene=A0A287B6F4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12546", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12546", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12546:SF55", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12546:SF55", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08150", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08150", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08151", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08151", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08165", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08165", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16165", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16165", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22901", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22901", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020929514", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929514", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AHC3", "url": "https://www.uniprot.org/uniprotkb/A0A287AHC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHC3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B6F4", "url": "https://www.uniprot.org/uniprotkb/A0A287B6F4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B6F4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B6F4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BPY3", "url": "https://www.uniprot.org/uniprotkb/A0A287BPY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BPY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BPY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8T2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8T2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8T2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS33-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS33-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9Y7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9Y7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9Y7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9Y7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDH2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDH2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7N0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7N0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7N0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7N0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC82", "url": "https://www.uniprot.org/uniprotkb/F1SC82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC82-1", "url": "https://www.uniprot.org/uniprotkb/F1SC82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIVVKDFETIGQNKLIGTATVALKDLVGDQSRSLPYKLTSLLNERGQETGATIDLVIGYDPPSAPHPNDPSGTSVPGMGGEEEEDGGDEEELDNTIKVPGPKGPGGMASEAHLARRLTKGRSSRRMLSNKPQDFQIRVRVIEGRQLSGNNIRPVVKVHVCGQTHRTRIKRGNNPFFDELFFYNVHLTPSELMDEIISIRVYNSHSLRADCLMGEFKIDVGFVYDEPGHAVMRKWLLLNDPEDTSSGAKGYMKVSMFVLGTGDEPPPEKRDRENDSDDVESNLLLPAGIALRWVTFLLKIYRAEDIPQMDDAFSQTVKEIFGGTADKKNLVDPFVEVSFAGKKVCTNIIEKNANPEWNQVVNLQIKFPSVCEKIKLTIYDWDRLTKNDVVGTTYLYLSKIAASGGEVEDFSSSGSGAASYTANTGETEVGFVPTFGPCYLNLYGSPREYTGFPDPYDELNTGKGEGVAYRGRIFVELSTLLEKTPPDKKLEPISNDDLLVVEKYQRRRKYSLSAVFHSATMLQDVGEAIQFEVSIGNYGNKFDTTCKPLASTTQYSRAIFDGNYYYYLPWAHTKPVVTLTSYWEDISHRLDAVNTLLVMAERLQSNLEALKSGIQGKIPANQLAEVWLKLIDEITEDTRYTLPLTEGKANVTVLDTQIQKLRSRALSQIHEAAVRMRSEATEVKSTLAEIEDWLDKLMQLTEEPQNSMPDIIIWMIRGEKRLAYARIPAHQVLYSTSGENASGKYCGKTQTIFLKYPQEKNNGPKVPVELRVNIWLGLSAVEKKFNSFAEGTFTVFAEMYENQALMFGKWGTSGLVGRHKFSDVTGKIKLKREFFLPPKGWEWEGDWIVDPERSLLTEADAGHTEFTDEVYQNESRYPGGEWKPAEDTYTDANGDKAASPSELTCPPGWEWEDDAWVYDINRAVDERGWEYGITIPPDNKPKSWVAAEKMYHTHRRRRLVRKRKKDLAQSTSSTAKAMEALEDREGWEYASLIGWKFHWKQRSSDTFRRRRWRRKMAPSETHGAAAIFKLEGALGADTTEDGDEKSSEKQKHSATTVFGANTPIVSCNFDRVYIYHLRCYIYQARNLMALDKDSFSDPYAHVSFLHRSKTTEIIHSTLNPTWDQTIIFDEIEIYGEPQTVLQNPPKVVIELFDSDQVGKDEFLGRSLCSPLVKLNSEMDITPKLLWYPVMNGDKACGDVLVTAELILRHKDGSNLPILPSQRAPNLYMVPQGIRPVVQLTAIEILAWGLRNMKNYQMASVTSPSLIVECGGERVESVVIKNLKKTPNFPSSVLFMKVFLPKEELYMPPLVIKVIDHRQFGRKPVVGQCTIDRLDRFRCDPYAGKEDIVPQLKASFLSAPPCRDVIIEIEDTKPLLASKLTEKEEEIVDWWSKFYASTGEHEKCGQYIQKGYSKLKIYDCELENVTEFEGLTDFSDTFKLYRGKSDENEDPSVVGEFKGSFRIYPLSDDPSVPAPPRQFRELPDSVPQECTVRIYIVRGLELQPQDNNGLCDPYIKITLGKKVIEDRDHYIPNTLNPVFGRMYELSCYLPQEKDLKISVYDYDTFTRDEKVGETIIDLENRFLSRFGSHCGIPEQYCVSGVNTWRDQLKPTQLLQNVARFKGFPPPVLSEDGSRIRYGGRDYSLDEFEVNKILHQHLGAPEERLALHILRTQGLVPEHVETRTLHSTFQPNISQGKLQMWVDVFPKSLGPPGPPFNITPRKAKRYYLRVIIWNTKEVILDEKSITGEDMSDIYVKGWIPGNEENKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEQLCIVAKKEHFWSIDQTEFRLPPRLIIQIWDNDKFSLDDYLGFLELDLHHTIIPAKSPEKCNLDMIPDLKAMNPLKVKTASLFEQKSMKGWWPCYVDKDGSRVMAGKVEMTLEVLNEKEADERPAGKGRDEPNMNPKLDPPNRPETSFLWFTNPCKTMKFIVWRRFKWVILGLLVLLIVLLFVAVLLYSLPNYLSMKIVKPNS", "length": 2061, "header": "tr|F1SC82-1|F1SC82_PIG Isoform 1 of Myoferlin OS=Sus scrofa OX=9823 GN=MYOF PE=1 SV=5 CANONICAL=F1SC82-1" }, "isoforms": [ { "isoform_ac": "A0A287AHC3-1", "url": "https://www.uniprot.org/uniprotkb/F1SC82/entry#A0A287AHC3-1", "sequence": { "sequence": "MLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIVVKDFETIGQNKLIGTATVALKDLVGDQSRSLPYKLTSLLNERGQETGATIDLVIGYDPPSAPHPNDPSGTSVPGMGGEEEEDGGDEEELDNTIKVPGPKGPGGMASEAHLARRLTKGRSSRRMLSNKPQDFQIRVRVIEGRQLSGNNIRPVVKVHVCGQTHRTRIKRGNNPFFDELFFYNVHLTPSELMDEIISIRVYNSHSLRADCLMGEFKIDVGFVYDEPGHAVMRKWLLLNDPEDTSSGAKGYMKVSMFVLGTGDEPPPEKRDRENDSDDVESNLLLPAGIALRWVTFLLKIYRAEDIPQMDDAFSQTVKEIFGGTADKKNLVDPFVEVSFAGKKVCTNIIEKNANPEWNQVVNLQIKFPSVCEKIKLTIYDWDRLTKNDVVGTTYLYLSKIAASGGEVEDFSSSGSGAASYTANTGETEVGFVPTFGPCYLNLYGSPREYTGFPDPYDELNTGKGEGVAYRGRIFVELSTLLEKTPPDKKLEPISNDDLLVVEKYQRRRKYSLSAVFHSATMLQDVGEAIQFEVSIGNYGNKFDTTCKPLASTTQYSRAIFDGNYYYYLPWAHTKPVVTLTSYWEDISHRLDAVNTLLVMAERLQSNLEALKSGIQGKIPANQLAEVWLKLIDEITEDTRYTLPLTEGKANVTVLDTQIQKLRSRALSQIHEAAVRMRSEATEVKSTLAEIEDWLDKLMQLTEEPQNSMPDIIIWMIRGEKRLAYARIPAHQVLYSTSGENASGKYCGKTQTIFLKYPQEKNNGPKVPVELRVNIWLGLSAVEKKFNSFAEGTFTVFAEMYENQALMFGKWGTSGLVGRHKFSDVTGKIKLKREFFLPPKGWEWEGDWIVDPERSLLTEADAGHTEFTDEVYQNESRYPGGEWKPAEDTYTDANGDKAASPSELTCPPGWEWEDDAWVYDINRAVDERGWEYGITIPPDNKPKSWVAAEKMYHTHRRRRLVRKRKKDLAQSTSSTAKAMEALEDREGWEYASLIGWKFHWKQRSSDTFRRRRWRRKMAPSETHGAAAIFKLEGALGADTTEDGDEKSSEKQKHSATTVFGANTPIVSCNFDRVYIYHLRCYIYQARNLMALDKDSFSDPYAHVSFLHRSKTTEIIHSTLNPTWDQTIIFDEIEIYGEPQTVLQNPPKVVIELFDSDQVGKDEFLGRSLCSPLVKLNSEMDITPKLLWYPVMNGDKACGDVLVTAELILRHKDGSNLPILPSQRAPNLYMVPQGIRPVVQLTAIEILAWGLRNMKNYQMASVTSPSLIVECGGERVESVVIKNLKKTPNFPSSVLFMKVFLPKEELYMPPLVIKVIDHRQFGRKPVVGQCTIDRLDRFRCDPYAGKEDIVPQLKASFLSAPPCRDVIIEIEDTKPLLASKEEEIVDWWSKFYASTGEHEKCGQYIQKGYSKLKIYDCELENVTEFEGLTDFSDTFKLYRGKSDENEDPSVVGEFKGSFRIYPLSDDPSVPAPPRQFRELPDSVPQECTVRIYIVRGLELQPQDNNGLCDPYIKITLGKKVIEDRDHYIPNTLNPVFGRMYELSCYLPQEKDLKISVYDYDTFTRDEKVGETIIDLENRFLSRFGSHCGIPEQYCVSGVNTWRDQLKPTQLLQNVARFKGFPPPVLSEDGSRIRYGGRDYSLDEFEVNKILHQHLGAPEERLALHILRTQGLVPEHVETRTLHSTFQPNISQGKLQMWVDVFPKSLGPPGPPFNITPRKAKRYYLRVIIWNTKEVILDEKSITGEDMSDIYVKGWIPGNEENKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEQLCIVAKKEHFWSIDQTEFRLPPRLIIQIWDNDKFSLDDYLGFLELDLHHTIIPAKSPEKCNLDMIPDLKAMNPLKVKTASLFEQKSMKGWWPCYVDKDGSRVMAGKVEMTLEVLNEKEADERPAGKGRDEPNMNPKLDPPNRPETSFLWFTNPCKTMKFIVWRRFKWVILGLLVLLIVLLFVAVLLYSLPVRVPGLCLGFLCGNCGRASHLAFAFVAVHQNDPRHHCGVATCQPLGHLMCPVMRIRISGFHELQAELHGLRKTVVSGIVGEIPQAFISVCLNESQHFRRVFLPSDVLVLNCHASSIFLLAFTDPRLIRGLHTP", "length": 2178, "header": "tr|A0A287AHC3-1|F1SC82_PIG Computationally mapped isoform of Myoferlin OS=Sus scrofa OX=9823 GN=MYOF PE=1 SV=2 CANONICAL=F1SC82-1" }, "locus": { "chromosome": "14", "start_pos": 104940815, "end_pos": 104772574, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039870.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039870.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043286.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043286.2" } ] } }, { "isoform_ac": "A0A287B6F4-1", "url": "https://www.uniprot.org/uniprotkb/F1SC82/entry#A0A287B6F4-1", "sequence": { "sequence": "MLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIVVKDFETIGQNKLIGTATVALKDLVGDQSRSLPYKLTSLLNERGQETGATIDLVIGYDPPSAPHPNDPSGTSVPGMGGEEEEDGGDEEELDNTIKVPGPKGPGGMASEAHLARRLTKGRSSRRMLSNKPQDFQIRVRVIEGRQLSGNNIRPVVKVHVCGQTHRTRIKRGNNPFFDELFFYNVHLTPSELMDEIISIRVYNSHSLRADCLMGEFKIDVGFVYDEPGHAVMRKWLLLNDPEDTSSGAKGYMKVSMFVLGTGDEPPPEKRDRENDSDDVESNLLLPAGIALRWVTFLLKIYRAEDIPQMDDAFSQTVKEIFGGTADKKNLVDPFVEVSFAGKKVCTNIIEKNANPEWNQVVNLQIKFPSVCEKIKLTIYDWDRLTKNDVVGTTYLYLSKIAASGGEVEDFSSSGSGAASYTANTGETEVGFVPTFGPCYLNLYGSPREYTGFPDPYDELNTGKGEGVAYRGRIFVELSTLLEKTPPDKKLEPISNDDLLVVEKYQRRRKYSLSAVFHSATMLQDVGEAIQFEVSIGNYGNKFDTTCKPLASTTQYSRAIFDGNYYYYLPWAHTKPVVTLTSYWEDISHRLDAVNTLLVMAERLQSNLEALKSGIQGKIPANQLAEVWLKLIDEITEDTRYTLPLTEGKANVTVLDTQIQKLRSRALSQIHEAAVRMRSEATEVKSTLAEIEDWLDKLMQLTEEPQNSMPDIIIWMIRGEKRLAYARIPAHQVLYSTSGENASGKYCGKTQTIFLKYPQEKNNGPKVPVELRVNIWLGLSAVEKKFNSFAEGTFTVFAEMYENQALMFGKWGTSGLVGRHKFSDVTGKIKLKREFFLPPKGWEWEGDWIVDPERSLLTEADAGHTEFTDEVYQNESRYPGGEWKPAEDTYTDANGDKAASPSELTCPPGWEWEDDAWVYDINRAVDERGWEYGITIPPDNKPKSWVAAEKMYHTHRRRRLVRKRKKDLAQSTSSTAKAMEALEDREGWEYASLIGWKFHWKQRSSDTFRRRRWRRKMAPSETHGAAAIFKLEGALGADTTEDGDEKSSEKQKHSATTVFGANTPIVSCNFDRVYIYHLRCYIYQARNLMALDKDSFSDPYAHVSFLHRSKTTEIIHSTLNPTWDQTIIFDEIEIYGEPQTVLQNPPKVVIELFDSDQVGKDEFLGRSLCSPLVKLNSEMDITPKLLWYPVMNGDKACGDVLVTAELILRHKDGSNLPILPSQRAPNLYMVPQGIRPVVQLTAIEILAWGLRNMKNYQMASVTSPSLIVECGGERVESVVIKNLKKTPNFPSSVLFMKVFLPKEELYMPPLVIKVIDHRQFGRKPVVGQCTIDRLDRFRCDPYAGKEDIVPQLKASFLSAPPCRDVIIEIEDTKPLLASKCLSSMSTALSKMASPTTVHLTEKEEEIVDWWSKFYASTGEHEKCGQYIQKGYSKLKIYDCELENVTEFEGLTDFSDTFKLYRGKSDENEDPSVVGEFKGSFRIYPLSDDPSVPAPPRQFRELPDSVPQECTVRIYIVRGLELQPQDNNGLCDPYIKITLGKKVIEDRDHYIPNTLNPVFGRMYELSCYLPQEKDLKISVYDYDTFTRDEKVGETIIDLENRFLSRFGSHCGIPEQYCVSGVNTWRDQLKPTQLLQNVARFKGFPPPVLSEDGSRIRYGGRDYSLDEFEVNKILHQHLGAPEERLALHILRTQGLVPEHVETRTLHSTFQPNISQGKLQMWVDVFPKSLGPPGPPFNITPRKAKRYYLRVIIWNTKEVILDEKSITGEDMSDIYVKGWIPGNEENKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEQLCIVAKKEHFWSIDQTEFRLPPRLIIQIWDNDKFSLDDYLGFLELDLHHTIIPAKSPEKCNLDMIPDLKAMNPLKVKTASLFEQKSMKGWWPCYVDKDGSRVMAGKVEMTLEVLNEKEADERPAGKGRDEPNMNPKLDPPNRPETSFLWFTNPCKTMKFIVWRRFKWVILGLLVLLIVLLFVAVLLYSLPNYLSMKIVKPNS", "length": 2080, "header": "tr|A0A287B6F4-1|F1SC82_PIG Computationally mapped isoform of Myoferlin OS=Sus scrofa OX=9823 GN=MYOF PE=1 SV=1 CANONICAL=F1SC82-1" }, "locus": { "chromosome": "14", "start_pos": 104940815, "end_pos": 104771040, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040954.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040954.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052034.1", "url": "https://www.ensembl.org/id/ENSSSCP00000052034.1" } ] } }, { "isoform_ac": "A0A287BPY3-1", "url": "https://www.uniprot.org/uniprotkb/F1SC82/entry#A0A287BPY3-1", "sequence": { "sequence": "MLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIVVKDFETIGQNKLIGTATVALKDLVGDQSRSLPYKLTSLLNERGQETGATIDLVIGYDPPSAPHPNDPSGTSVPGMGGEEEEDGGDEEELDNTIKVPGPKGPGGMASEAHLARRLTKGRSSRRMLSNKPQDFQIRVRVIEGRQLSGNNIRPVVKVHVCGQTHRTRIKRGNNPFFDELFFYNVHLTPSELMDEIISIRVYNSHSLRADCLMGEFKIDVGFVYDEPGHAVMRKWLLLNDPEDTSSGAKGYMKVSMFVLGTGDEPPPEKRDRENDSDDVESNLLLPAGIALRWVTFLLKIYRAEDIPQMDDAFSQTVKEIFGGTADKKNLVDPFVEVSFAGKKVCTNIIEKNANPEWNQVVNLQIKFPSVCEKIKLTIYDWDRLTKNDVVGTTYLYLSKIAASGGEVEANTGETEVGFVPTFGPCYLNLYGSPREYTGFPDPYDELNTGKGEGVAYRGRIFVELSTLLEKTPPDKKLEPISNDDLLVVEKYQRRRKYSLSAVFHSATMLQDVGEAIQFEVSIGNYGNKFDTTCKPLASTTQYSRAIFDGNYYYYLPWAHTKPVVTLTSYWEDISHRLDAVNTLLVMAERLQSNLEALKSGIQGKIPANQLAEVWLKLIDEITEDTRYTLPLTEGKANVTVLDTQIQKLRSRALSQIHEAAVRMRSEATEVKSTLAEIEDWLDKLMQLTEEPQNSMPDIIIWMIRGEKRLAYARIPAHQVLYSTSGENASGKYCGKTQTIFLKYPQEKNNGPKVPVELRVNIWLGLSAVEKKFNSFAEGTFTVFAEMYENQALMFGKWGTSGLVGRHKFSDVTGKIKLKREFFLPPKGWEWEGDWIVDPERSLLTEADAGHTEFTDEVYQNESRYPGGEWKPAEDTYTDANGDKAASPSELTCPPGWEWEDDAWVYDINRAVDERGWEYGITIPPDNKPKSWVAAEKMYHTHRRRRLVRKRKKDLAQSTSSTAKAMEALEDREGWEYASLIGWKFHWKQRSSDTFRRRRWRRKMAPSETHGAAAIFKLEGALGADTTEDGDEKSSEKQKHSATTVFGANTPIVSCNFDRVYIYHLRCYIYQARNLMALDKDSFSDPYAHVSFLHRSKTTEIIHSTLNPTWDQTIIFDEIEIYGEPQTVLQNPPKVVIELFDSDQVGKDEFLGRSLCSPLVKLNSEMDITPKLLWYPVMNGDKACGDVLVTAELILRHKDGSNLPILPSQRAPNLYMVPQGIRPVVQLTAIEILAWGLRNMKNYQMASVTSPSLIVECGGERVESVVIKNLKKTPNFPSSVLFMKVFLPKEELYMPPLVIKVIDHRQFGRKPVVGQCTIDRLDRFRCDPYAGKEDIVPQLKASFLSAPPCRDVIIEIEDTKPLLASKLTEKEEEIVDWWSKFYASTGEHEKCGQYIQKGYSKLKIYDCELENVTEFEGLTDFSDTFKLYRGKSDENEDPSVVGEFKGSFRIYPLSDDPSVPAPPRQFRELPDSVPQECTVRIYIVRGLELQPQDNNGLCDPYIKITLGKKVIEDRDHYIPNTLNPVFGRMYELSCYLPQEKDLKISVYDYDTFTRDEKVGETIIDLENRFLSRFGSHCGIPEQYCVSGVNTWRDQLKPTQLLQNVARFKGFPPPVLSEDGSRIRYGGRDYSLDEFEVNKILHQHLGAPEERLALHILRTQGLVPEHVETRTLHSTFQPNISQGKLQMWVDVFPKSLGPPGPPFNITPRKAKRYYLRVIIWNTKEVILDEKSITGEDMSDIYVKGWIPGNEENKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEQLCIVAKKEHFWSIDQTEFRLPPRLIIQIWDNDKFSLDDYLGFLELDLHHTIIPAKSPEKCNLDMIPDLKAMNPLKVKTASLFEQKSMKGWWPCYVDKDGSRVMAGKVEMTLEVLNEKEADERPAGKGRDEPNMNPKLDPPNRPETSFLWFTNPCKTMKFIVWRRFKWVILGLLVLLIVLLFVAVLLYSLPNYLSMKIVKPNS", "length": 2048, "header": "tr|A0A287BPY3-1|F1SC82_PIG Computationally mapped isoform of Myoferlin OS=Sus scrofa OX=9823 GN=MYOF PE=1 SV=3 CANONICAL=F1SC82-1" }, "locus": { "chromosome": "14", "start_pos": 104940815, "end_pos": 104771040, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038998.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038998.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058239.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058239.3" } ] } }, { "isoform_ac": "A0A5G2Q8T2-1", "url": "https://www.uniprot.org/uniprotkb/F1SC82/entry#A0A5G2Q8T2-1", "sequence": { "sequence": "MLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIVVKDFETIGQNKLIGTATVALKDLVGDQSRSLPYKLTSLLNERGQETGATIDLVIGYDPPSAPHPNDPSGTSVPGMGGEEEEDGGDEEELDNTIKVPGPKGPGGMASEAHLARRLTKGRSSRRMLSNKPQDFQIRVRVIEGRQLSGNNIRPVVKVHVCGQTHRTRIKRGNNPFFDELFFYNVHLTPSELMDEIISIRVYNSHSLRADCLMGEFKIDVGFVYDEPGHAVMRKWLLLNDPEDTSSGAKGYMKVSMFVLGTGDEPPPEKRDRENDSDDVESNLLLPAGIALRWVTFLLKIYRAEDIPQMDDAFSQTVKEIFGGTADKKNLVDPFVEVSFAGKKVCTNIIEKNANPEWNQVVNLQIKFPSVCEKIKLTIYDWDRLTKNDVVGTTYLYLSKIAASGGEVEDFSSSGSGAASYTANTGETEVGFVPTFGPCYLNLYGSPREYTGFPDPYDELNTGKGEGVAYRGRIFVELSTLLEKTPPDKKLEPISNDDLLVVEKYQRRRKYSLSAVFHSATMLQDVGEAIQFEVSIGNYGNKFDTTCKPLASTTQYSRAIFDGNYYYYLPWAHTKPVVTLTSYWEDISHRLDAVNTLLVMAERLQSNLEALKSGIQGKIPANQLAEVWLKLIDEITEDTRYTLPLTEGKANVTVLDTQIQKLRSRALSQIHEAAVRMRSEATEVKSTLAEIEDWLDKLMQLTEEPQNSMPDIIIWMIRGEKRLAYARIPAHQVLYSTSGENASGKYCGKTQTIFLKYPQEKNNGPKVPVELRVNIWLGLSAVEKKFNSFAEGTFTVFAEMYENQALMFGKWGTSGLVGRHKFSDVTGKIKLKREFFLPPKGWEWEGDWIVDPERSLLTEADAGHTEFTDEVYQNESRYPGGEWKPAEDTYTDANGDKAASPSELTCPPGWEWEDDAWVYDINRAVDERGWEYGITIPPDNKPKSWVAAEKMYHTHRRRRLVRKRKKDLAQSTSSTAKAMEALEDREGWEYASLIGWKFHWKQRSSDTFRRRRWRRKMAPSETHGAAAIFKLEGALGADTTEDGDEKSSEKQKHSATTVFGANTPIVSCNFDRVYIYHLRCYIYQARNLMALDKDSFSDPYAHVSFLHRSKTTEIIHSTLNPTWDQTIIFDEIEIYGEPQTVLQNPPKVVIELFDSDQVGKDEFLGRSLCSPLVKLNSEMDITPKLLWYPVMNGDKACGDVLVTAELILRHKDGSNLPILPSQRAPNLYMVPQGIRPVVQLTAIEILAWGLRNMKNYQMASVTSPSLIVECGGERVESVVIKNLKKTPNFPSSVLFMKVFLPKEELYMPPLVIKVIDHRQFGRKPVVGQCTIDRLDRFRCDPYAGKEDIVPQLKASFLSAPPCRDVIIEIEDTKPLLASKCLSSMSTALSKMASPTTVHEEEIVDWWSKFYASTGEHEKCGQYIQKGYSKLKIYDCELENVTEFEGLTDFSDTFKLYRGKSDENEDPSVVGEFKGSFRIYPLSDDPSVPAPPRQFRELPDSVPQECTVRIYIVRGLELQPQDNNGLCDPYIKITLGKKVIEDRDHYIPNTLNPVFGRMYELSCYLPQEKDLKISVYDYDTFTRDEKVGETIIDLENRFLSRFGSHCGIPEQYCVSGVNTWRDQLKPTQLLQNVARFKGFPPPVLSEDGSRIRYGGRDYSLDEFEVNKILHQHLGAPEERLALHILRTQGLVPEHVETRTLHSTFQPNISQGKLQMWVDVFPKSLGPPGPPFNITPRKAKRYYLRVIIWNTKEVILDEKSITGEDMSDIYVKGWIPGNEENKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEQLCIVAKKEHFWSIDQTEFRLPPRLIIQIWDNDKFSLDDYLGFLELDLHHTIIPAKSPEKCNLDMIPDLKAMNPLKVKTASLFEQKSMKGWWPCYVDKDGSRVMAGKVEMTLEVLNEKEADERPAGKGRDEPNMNPKLDPPNRPETSFLWFTNPCKTMKFIVWRRFKWVILGLLVLLIVLLFVAVLLYSLPVRVPVVPPSSIQGNVEHLLSAKRNWNVETPKAGFLPRGSSYPAYKQHTN", "length": 2113, "header": "tr|A0A5G2Q8T2-1|F1SC82_PIG Computationally mapped isoform of Myoferlin OS=Sus scrofa OX=9823 GN=MYOF PE=1 SV=2 CANONICAL=F1SC82-1" }, "locus": { "chromosome": "14", "start_pos": 104940815, "end_pos": 104772228, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069599.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069599.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059667.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059667.2" } ] } }, { "isoform_ac": "A0A5G2QS33-1", "url": "https://www.uniprot.org/uniprotkb/F1SC82/entry#A0A5G2QS33-1", "sequence": { "sequence": "MLRVIVESASNIPKTKFGKPDPIVSVIFKATVALKDLVGDQSRSLPYKLTSLLNERGQETGATIDLVIGYDPPSAPHPNDPSGTSVPGMGGEEEEDGGDEEELDNTIKVPGPKGPGGMASEAHLARRLTKGRSSRRMLSNKPQDFQIRVRVIEGRQLSGNNIRPVVKVHVCGQTHRTRIKRGNNPFFDELFFYNVHLTPSELMDEIISIRVYNSHSLRADCLMGEFKIDVGFVYDEPGHAVMRKWLLLNDPEDTSSGAKGYMKVSMFVLGTGDEPPPEKRDRENDSDDVESNLLLPAGIALRWVTFLLKIYRAEDIPQMDDAFSQTVKEIFGGTADKKNLVDPFVEVSFAGKKVCTNIIEKNANPEWNQVVNLQIKFPSVCEKIKLTIYDWDRLTKNDVVGTTYLYLSKIAASGGEVEDFSSSGSGAASYTANTGETEVGFVPTFGPCYLNLYGSPREYTGFPDPYDELNTGKGEGVAYRGRIFVELSTLLEKTPPDKKLEPISNDDLLVVEKYQRRRKYSLSAVFHSATMLQDVGEAIQFEVSIGNYGNKFDTTCKPLASTTQYSRAIFDGNYYYYLPWAHTKPVVTLTSYWEDISHRLDAVNTLLVMAERLQSNLEALKSGIQGKIPANQLAEVWLKLIDEITEDTRYTLPLTEGKANVTVLDTQIQKLRSRALSQIHEAAVRMRSEATEVKSTLAEIEDWLDKLMQLTEEPQNSMPDIIIWMIRGEKRLAYARIPAHQVLYSTSGENASGKYCGKTQTIFLKYPQEKNNGPKVPVELRVNIWLGLSAVEKKFNSFAEGTFTVFAEMYENQALMFGKWGTSGLVGRHKFSDVTGKIKLKREFFLPPKGWEWEGDWIVDPERSLLTEADAGHTEFTDEVYQNESRYPGGEWKPAEDTYTDANGDKAASPSELTCPPGWEWEDDAWVYDINRAVDERGWEYGITIPPDNKPKSWVAAEKMYHTHRRRRLVRKRKKDLAQSTSSTAKAMEALEDREGWEYASLIGWKFHWKQRSSDTFRRRRWRRKMAPSETHGAAAIFKLEGALGADTTEDGDEKSSEKQKHSATTVFGANTPIVSCNFDRVYIYHLRCYIYQARNLMALDKDSFSDPYAHVSFLHRSKTTEIIHSTLNPTWDQTIIFDEIEIYGEPQTVLQNPPKVVIELFDSDQVGKDEFLGRSLCSPLVKLNSEMDITPKLLWYPVMNGDKACGDVLVTAELILRHKDGSNLPILPSQRAPNLYMVPQGIRPVVQLTAIEILAWGLRNMKNYQMASVTSPSLIVECGGERVESVVIKNLKKTPNFPSSVLFMKVFLPKEELYMPPLVIKVIDHRQFGRKPVVGQCTIDRLDRFRCDPYAGKEDIVPQLKASFLSAPPCRDVIIEIEDTKPLLASKLTEKEEEIVDWWSKFYASTGEHEKCGQYIQKGYSKLKIYDCELENVTEFEGLTDFSDTFKLYRGKSDENEDPSVVGEFKGSFRIYPLSDDPSVPAPPRQFRELPDSVPQECTVRIYIVRGLELQPQDNNGLCDPYIKITLGKKVIEDRDHYIPNTLNPVFGRMYELSCYLPQEKDLKISVYDYDTFTRDEKVGETIIDLENRFLSRFGSHCGIPEQYCVSGVNTWRDQLKPTQLLQNVARFKGFPPPVLSEDGSRIRYGGRDYSLDEFEVNKILHQHLGAPEERLALHILRTQGLVPEHVETRTLHSTFQPNISQGKLQMWVDVFPKSLGPPGPPFNITPRKAKRYYLRVIIWNTKEVILDEKSITGEDMSDIYVKGWIPGNEENKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEQLCIVAKKEHFWSIDQTEFRLPPRLIIQIWDNDKFSLDDYLGFLELDLHHTIIPAKSPEKCNLDMIPDLKAMNPLKVKTASLFEQKSMKGWWPCYVDKDGSRVMAGKVEMTLEVLNEKEADERPAGKGRDEPNMNPKLDPPNRPETSFLWFTNPCKTMKFIVWRRFKWVILGLLVLLIVLLFVAVLLYSLPNYLSMKIVKPNS", "length": 2007, "header": "tr|A0A5G2QS33-1|F1SC82_PIG Computationally mapped isoform of Myoferlin OS=Sus scrofa OX=9823 GN=MYOF PE=1 SV=1 CANONICAL=F1SC82-1" }, "locus": { "chromosome": "14", "start_pos": 104940815, "end_pos": 104771040, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082147.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082147.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066924.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066924.1" } ] } }, { "isoform_ac": "A0A5G2R9Y7-1", "url": "https://www.uniprot.org/uniprotkb/F1SC82/entry#A0A5G2R9Y7-1", "sequence": { "sequence": "MLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIVVKDFETIGQNKLIGTATVALKDLVGDQSRSLPYKLTSLLNERGQETGATIDLVIGYDPPSAPHPNDPSGTSVPGMGGEEEEDGGDEEELDNTIKVPGPKGPGGMASEAHLARRLTKGRSSRRMLSNKPQDFQIRVRVIEGRQLSGNNIRPVVKVHVCGQTHRTRIKRGNNPFFDELFFYNVHLTPSELMDEIISIRVYNSHSLRADCLMGEFKIDVGFVYDEPGHAVMRKWLLLNDPEDTSSGAKGYMKVSMFVLGTGDEPPPEKRDRENDSDDVESNLLLPAGIALRWVTFLLKIYRAEDIPQMDDAFSQTVKEIFGGTADKKNLVDPFVEVSFAGKKVCTNIIEKNANPEWNQVVNLQIKFPSVCEKIKLTIYDWDRLTKNDVVGTTYLYLSKIAASGGEVEDFSSSGSGAASYTANTGETEVGFVPTFGPCYLNLYGSPREYTGFPDPYDELNTGKGEGVAYRGRIFVELSTLLEKTPPDKKLEPISNDDLLVVEKYQRRRKYSLSAVFHSATMLQDVGEAIQFEVSIGNYGNKFDTTCKPLASTTQYSRAIFDGNYYYYLPWAHTKPVVTLTSYWEDISHRLDAVNTLLVMAERLQSNLEALKSGIQGKIPANQLAEVWLKLIDEITEDTRYTLPLTEGKANVTVLDTQIQKLRSRALSQIHEAAVRMRSEATEVKSTLAEIEDWLDKLMQLTEEPQNSMPDIIIWMIRGEKRLAYARIPAHQVLYSTSGENASGKYCGKTQTIFLKYPQEKNNGPKVPVELRVNIWLGLSAVEKKFNSFAEGTFTVFAEMYENQALMFGKWGTSGLVGRHKFSDVTGKIKLKREFFLPPKGWEWEGDWIVDPERSLLTEADAGHTEFTDEVYQNESRYPGGEWKPAEDTYTDANGDKAASPSELTCPPGWEWEDDAWVYDINRAVDERGWEYGITIPPDNKPKSWVAAEKMYHTHRRRRLVRKRKKDLAQSTSSTAKAMEALEDREGWEYASLIGWKFHWKQRSSDTFRRRRWRRKMAPSETHGAAAIFKLEGALGADTTEDGDEKSSEKQKHSATTVFGANTPIVSCNFDRVYIYHLRCYIYQARNLMALDKDSFSDPYAHVSFLHRSKTTEIIHSTLNPTWDQTIIFDEIEIYGEPQTVLQNPPKVVIELFDSDQVGKDEFLGRSLCSPLVKLNSEMDITPKLLWYPVMNGDKACGDVLVTAELILRHKDGSNLPILPSQRAPNLYMVPQGIRPVVQLTAIEILAWGLRNMKNYQMASVTSPSLIVECGGERVESVVIKNLKKTPNFPSSVLFMKVIYDCELENVTEFEGLTDFSDTFKLYRGKSDENEDPSVVGEFKGSFRIYPLSDDPSVPAPPRQFRELPDSVPQECTVRIYIVRGLELQPQDNNGLCDPYIKITLGKKVIEDRDHYIPNTLNPVFGRMYELSCYLPQEKDLKISVYDYDTFTRDEKVGETIIDLENRFLSRFGSHCGIPEQYCVSGVNTWRDQLKPTQLLQNVARFKGFPPPVLSEDGSRIRYGGRDYSLDEFEVNKILHQHLGAPEERLALHILRTQGLVPEHVETRTLHSTFQPNISQGKLQMWVDVFPKSLGPPGPPFNITPRKAKRYYLRVIIWNTKEVILDEKSITGEDMSDIYVKGWIPGNEENKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEQLCIVAKKEHFWSIDQTEFRLPPRLIIQIWDNDKFSLDDYLGFLELDLHHTIIPAKSPEKCNLDMIPDLKAMNPLKVKTASLFEQKSMKGWWPCYVDKDGSRVMAGKVEMTLEVLNEKEADERPAGKGRDEPNMNPKLDPPNRPETSFLWFTNPCKTMKFIVWRRFKWVILGLLVLLIVLLFVAVLLYSLPNYLSMKIVKPNS", "length": 1943, "header": "tr|A0A5G2R9Y7-1|F1SC82_PIG Computationally mapped isoform of Myoferlin OS=Sus scrofa OX=9823 GN=MYOF PE=1 SV=1 CANONICAL=F1SC82-1" }, "locus": { "chromosome": "14", "start_pos": 104940815, "end_pos": 104771040, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070373.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070373.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070949.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070949.1" } ] } }, { "isoform_ac": "A0A5G2RDH2-1", "url": "https://www.uniprot.org/uniprotkb/F1SC82/entry#A0A5G2RDH2-1", "sequence": { "sequence": "MSLSSLQAHNILEFDLRGIPLDFSSSLGIVVKDFETIGQNKLIGTATVALKDLVGDQSRSLPYKLTSLLNERGQETGATIDLVIGYDPPSAPHPNDPSGTSVPGMGGEEEEDGGDEEELDNTIKVPGPKGPGGMASEAHLARRLTKGRSSRRMLSNKPQDFQIRVRVIEGRQLSGNNIRPVVKVHVCGQTHRTRIKRGNNPFFDELFFYNVHLTPSELMDEIISIRVYNSHSLRADCLMGEFKIDVGFVYDEPGHAVMRKWLLLNDPEDTSSGAKGYMKVSMFVLGTGDEPPPEKRDRENDSDDVESNLLLPAGIALRWVTFLLKIYRAEDIPQMDDAFSQTVKEIFGGTADKKNLVDPFVEVSFAGKKVCTNIIEKNANPEWNQVVNLQIKFPSVCEKIKLTIYDWDRLTKNDVVGTTYLYLSKIAASGGEVEANTGETEVGFVPTFGPCYLNLYGSPREYTGFPDPYDELNTGKGEGVAYRGRIFVELSTLLEKTPPDKKLEPISNDDLLVVEKYQRRRKYSLSAVFHSATMLQDVGEAIQFEVSIGNYGNKFDTTCKPLASTTQYSRAIFDGNYYYYLPWAHTKPVVTLTSYWEDISHRLDAVNTLLVMAERLQSNLEALKSGIQGKIPANQLAEVWLKLIDEITEDTRYTLPLTEGKANVTVLDTQIQKLRSRALSQIHEAAVRMRSEATEVKSTLAEIEDWLDKLMQLTEEPQNSMPDIIIWMIRGEKRLAYARIPAHQVLYSTSGENASGKYCGKTQTIFLKYPQEKNNGPKVPVELRVNIWLGLSAVEKKFNSFAEGTFTVFAEMYENQALMFGKWGTSGLVGRHKFSDVTGKIKLKREFFLPPKGWEWEGDWIVDPERSLLTEADAGHTEFTDEVYQNESRYPGGEWKPAEDTYTDANGDKAASPSELTCPPGWEWEDDAWVYDINRAVDERGWEYGITIPPDNKPKSWVAAEKMYHTHRRRRLVRKRKKDLAQSTSSTAKAMEALEDREGWEYASLIGWKFHWKQRSSDTFRRRRWRRKMAPSETHGAAAIFKLEGALGADTTEDGDEKSSEKQKHSATTVFGANTPIVSCNFDRVYIYHLRCYIYQARNLMALDKDSFSDPYAHVSFLHRSKTTEIIHSTLNPTWDQTIIFDEIEIYGEPQTVLQNPPKVVIELFDSDQVGKDEFLGRSLCSPLVKLNSEMDITPKLLWYPVMNGDKACGDVLVTAELILRHKDGSNLPILPSQRAPNLYMVPQGIRPVVQLTAIEILAWGLRNMKNYQMASVTSPSLIVECGGERVESVVIKNLKKTPNFPSSVLFMKVFLPKEELYMPPLVIKVIDHRQFGRKPVVGQCTIDRLDRFRCDPYAGKEDIVPQLKASFLSAPPCRDVIIEIEDTKPLLASKCLSSMSTALSKMASPTTVHLTEKEEEIVDWWSKFYASTGEHEKCGQYIQKGYSKLKIYDCELENVTEFEGLTDFSDTFKLYRGKSDENEDPSVVGEFKGSFRIYPLSDDPSVPAPPRQFRELPDSVPQECTVRIYIVRGLELQPQDNNGLCDPYIKITLGKKVIEDRDHYIPNTLNPVFGRMYELSCYLPQEKDLKISVYDYDTFTRDEKVGETIIDLENRFLSRFGSHCGIPEQYCVSGVNTWRDQLKPTQLLQNVARFKGFPPPVLSEDGSRIRYGGRDYSLDEFEVNKILHQHLGAPEERLALHILRTQGLVPEHVETRTLHSTFQPNISQGKLQMWVDVFPKSLGPPGPPFNITPRKAKRYYLRVIIWNTKEVILDEKSITGEDMSDIYVKGWIPGNEENKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEQLCIVAKKEHFWSIDQTEFRLPPRLIIQIWDNDKFSLDDYLGFLELDLHHTIIPAKSPEKCNLDMIPDLKAMNPLKVKTASLFEQKSMKGWWPCYVDKDGSRVMAGKVEMTLEVLNEKEADERPAGKGRDEPNMNPKLDPPNRPETSFLWFTNPCKTMKFIVWRRFKWVILGLLVLLIVLLFVAVLLYSLPNYLSMKIVKPNS", "length": 2029, "header": "tr|A0A5G2RDH2-1|F1SC82_PIG Computationally mapped isoform of Myoferlin OS=Sus scrofa OX=9823 GN=MYOF PE=1 SV=2 CANONICAL=F1SC82-1" }, "locus": { "chromosome": "14", "start_pos": 104910928, "end_pos": 104771040, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074414.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074414.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072433.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072433.2" } ] } }, { "isoform_ac": "A0A8W4F7N0-1", "url": "https://www.uniprot.org/uniprotkb/F1SC82/entry#A0A8W4F7N0-1", "sequence": { "sequence": "MGREFEEDGGDEEELDNTIKVPGPKGPGGMASEAHLARRLTKGRSSRRMLSNKPQDFQIRVRVIEGRQLSGNNIRPVVKVHVCGQTHRTRIKRGNNPFFDELFFYNVHLTPSELMDEIISIRVYNSHSLRADCLMGEFKIDVGFVYDEPGHAVMRKWLLLNDPEDTSSGAKGYMKVSMFVLGTGDEPPPEKRDRENDSDDVESNLLLPAGIALRWVTFLLKIYRAEDIPQMDDAFSQTVKEIFGGTADKKNLVDPFVEVSFAGKKVCTNIIEKNANPEWNQVVNLQIKFPSVCEKIKLTIYDWDRLTKNDVVGTTYLYLSKIAASGGEVEANTGETEVGFVPTFGPCYLNLYGSPREYTGFPDPYDELNTGKGEGVAYRGRIFVELSTLLEKTPPDKKLEPISNDDLLVVEKYQRRRKYSLSAVFHSATMLQDVGEAIQFEVSIGNYGNKFDTTCKPLASTTQYSRAIFDGNYYYYLPWAHTKPVVTLTSYWEDISHRLDAVNTLLVMAERLQSNLEALKSGIQGKIPANQLAEVWLKLIDEITEDTRYTLPLTEGKANVTVLDTQIQKLRSRALSQIHEAAVRMRSEATEVKSTLAEIEDWLDKLMQLTEEPQNSMPDIIIWMIRGEKRLAYARIPAHQVLYSTSGENASGKYCGKTQTIFLKYPQEKNNGPKVPVELRVNIWLGLSAVEKKFNSFAEGTFTVFAEMYENQALMFGKWGTSGLVGRHKFSDVTGKIKLKREFFLPPKGWEWEGDWIVDPERSLLTEADAGHTEFTDEVYQNESRYPGGEWKPAEDTYTDANGDKAASPSELTCPPGWEWEDDAWVYDINRAVDERGWEYGITIPPDNKPKSWVAAEKMYHTHRRRRLVRKRKKDLAQSTSSTAKAMEALEDREGWEYASLIGWKFHWKQRSSDTFRRRRWRRKMAPSETHGAAAIFKLEGALGADTTEDGDEKSSEKQKHSATTVFGANTPIVSCNFDRVYIYHLRCYIYQARNLMALDKDSFSDPYAHVSFLHRSKTTEIIHSTLNPTWDQTIIFDEIEIYGEPQTVLQNPPKVVIELFDSDQVGKDEFLGRSLCSPLVKLNSEMDITPKLLWYPVMNGDKACGDVLVTAELILRHKDGSNLPILPSQRAPNLYMVPQGIRPVVQLTAIEILAWGLRNMKNYQMASVTSPSLIVECGGERVESVVIKNLKKTPNFPSSVLFMKVFLPKEELYMPPLVIKVIDHRQFGRKPVVGQCTIDRLDRFRCDPYAGKEDIVPQLKASFLSAPPCRDVIIEIEDTKPLLASKCLSSMSTALSKMASPTTVHEEEIVDWWSKFYASTGEHEKCGQYIQKGYSKLKIYDCELENVTEFEGLTDFSDTFKLYRGKSDENEDPSVVGEFKGSFRIYPLSDDPSVPAPPRQFRELPDSVPQECTVRIYIVRGLELQPQDNNGLCDPYIKITLGKKVIEDRDHYIPNTLNPVFGRMYELSCYLPQEKDLKISVYDYDTFTRDEKVGETIIDLENRFLSRFGSHCGIPEQYCVSGVNTWRDQLKPTQLLQNVARFKGFPPPVLSEDGSRIRYGGRDYSLDEFEVNKILHQHLGAPEERLALHILRTQGLVPEHVETRTLHSTFQPNISQGKLQMWVDVFPKSLGPPGPPFNITPRKAKRYYLRVIIWNTKEVILDEKSITGEDMSDIYVKGWIPGNEENKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEQLCIVAKKEHFWSIDQTEFRLPPRLIIQIWDNDKFSLDDYLGFLELDLHHTIIPAKSPEKCNLDMIPDLKAMNPLKVKTASLFEQKSMKGWWPCYVDKDGSRVMAGKVEMTLEVLNEKEADERPAGKGRDEPNMNPKLDPPNRPETSFLWFTNPCKTMKFIVWRRFKWVILGLLVLLIVLLFVAVLLYSLPVRVPVVPPSSIQGNVEHLLSAKRNWNVETPKAGFLPRGSSYPAYKQHTN", "length": 1958, "header": "tr|A0A8W4F7N0-1|F1SC82_PIG Computationally mapped isoform of Myoferlin OS=Sus scrofa OX=9823 GN=MYOF PE=1 SV=1 CANONICAL=F1SC82-1" }, "locus": { "chromosome": "14", "start_pos": 104883744, "end_pos": 104772228, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094871.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094871.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075249.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075249.1" } ] } }, { "isoform_ac": "F1SC82-1", "url": "https://www.uniprot.org/uniprotkb/F1SC82/entry#F1SC82-1", "sequence": { "sequence": "MLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIVVKDFETIGQNKLIGTATVALKDLVGDQSRSLPYKLTSLLNERGQETGATIDLVIGYDPPSAPHPNDPSGTSVPGMGGEEEEDGGDEEELDNTIKVPGPKGPGGMASEAHLARRLTKGRSSRRMLSNKPQDFQIRVRVIEGRQLSGNNIRPVVKVHVCGQTHRTRIKRGNNPFFDELFFYNVHLTPSELMDEIISIRVYNSHSLRADCLMGEFKIDVGFVYDEPGHAVMRKWLLLNDPEDTSSGAKGYMKVSMFVLGTGDEPPPEKRDRENDSDDVESNLLLPAGIALRWVTFLLKIYRAEDIPQMDDAFSQTVKEIFGGTADKKNLVDPFVEVSFAGKKVCTNIIEKNANPEWNQVVNLQIKFPSVCEKIKLTIYDWDRLTKNDVVGTTYLYLSKIAASGGEVEDFSSSGSGAASYTANTGETEVGFVPTFGPCYLNLYGSPREYTGFPDPYDELNTGKGEGVAYRGRIFVELSTLLEKTPPDKKLEPISNDDLLVVEKYQRRRKYSLSAVFHSATMLQDVGEAIQFEVSIGNYGNKFDTTCKPLASTTQYSRAIFDGNYYYYLPWAHTKPVVTLTSYWEDISHRLDAVNTLLVMAERLQSNLEALKSGIQGKIPANQLAEVWLKLIDEITEDTRYTLPLTEGKANVTVLDTQIQKLRSRALSQIHEAAVRMRSEATEVKSTLAEIEDWLDKLMQLTEEPQNSMPDIIIWMIRGEKRLAYARIPAHQVLYSTSGENASGKYCGKTQTIFLKYPQEKNNGPKVPVELRVNIWLGLSAVEKKFNSFAEGTFTVFAEMYENQALMFGKWGTSGLVGRHKFSDVTGKIKLKREFFLPPKGWEWEGDWIVDPERSLLTEADAGHTEFTDEVYQNESRYPGGEWKPAEDTYTDANGDKAASPSELTCPPGWEWEDDAWVYDINRAVDERGWEYGITIPPDNKPKSWVAAEKMYHTHRRRRLVRKRKKDLAQSTSSTAKAMEALEDREGWEYASLIGWKFHWKQRSSDTFRRRRWRRKMAPSETHGAAAIFKLEGALGADTTEDGDEKSSEKQKHSATTVFGANTPIVSCNFDRVYIYHLRCYIYQARNLMALDKDSFSDPYAHVSFLHRSKTTEIIHSTLNPTWDQTIIFDEIEIYGEPQTVLQNPPKVVIELFDSDQVGKDEFLGRSLCSPLVKLNSEMDITPKLLWYPVMNGDKACGDVLVTAELILRHKDGSNLPILPSQRAPNLYMVPQGIRPVVQLTAIEILAWGLRNMKNYQMASVTSPSLIVECGGERVESVVIKNLKKTPNFPSSVLFMKVFLPKEELYMPPLVIKVIDHRQFGRKPVVGQCTIDRLDRFRCDPYAGKEDIVPQLKASFLSAPPCRDVIIEIEDTKPLLASKLTEKEEEIVDWWSKFYASTGEHEKCGQYIQKGYSKLKIYDCELENVTEFEGLTDFSDTFKLYRGKSDENEDPSVVGEFKGSFRIYPLSDDPSVPAPPRQFRELPDSVPQECTVRIYIVRGLELQPQDNNGLCDPYIKITLGKKVIEDRDHYIPNTLNPVFGRMYELSCYLPQEKDLKISVYDYDTFTRDEKVGETIIDLENRFLSRFGSHCGIPEQYCVSGVNTWRDQLKPTQLLQNVARFKGFPPPVLSEDGSRIRYGGRDYSLDEFEVNKILHQHLGAPEERLALHILRTQGLVPEHVETRTLHSTFQPNISQGKLQMWVDVFPKSLGPPGPPFNITPRKAKRYYLRVIIWNTKEVILDEKSITGEDMSDIYVKGWIPGNEENKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEQLCIVAKKEHFWSIDQTEFRLPPRLIIQIWDNDKFSLDDYLGFLELDLHHTIIPAKSPEKCNLDMIPDLKAMNPLKVKTASLFEQKSMKGWWPCYVDKDGSRVMAGKVEMTLEVLNEKEADERPAGKGRDEPNMNPKLDPPNRPETSFLWFTNPCKTMKFIVWRRFKWVILGLLVLLIVLLFVAVLLYSLPNYLSMKIVKPNS", "length": 2061, "header": "tr|F1SC82-1|F1SC82_PIG Isoform 1 of Myoferlin OS=Sus scrofa OX=9823 GN=MYOF PE=1 SV=5 CANONICAL=F1SC82-1" }, "locus": { "chromosome": "14", "start_pos": 104940815, "end_pos": 104771040, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011464.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011464.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011165.5", "url": "https://www.ensembl.org/id/ENSSSCP00000011165.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F7N0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7N0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154898", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154898", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phospholipid binding", "id": "GO:0005543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005543", "evidence": [ { "database": "UniProtKB", "id": "F1SC82", "url": "https://www.uniprot.org/uniprotkb/F1SC82" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SC82", "url": "https://www.uniprot.org/uniprotkb/F1SC82" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SC82", "url": "https://www.uniprot.org/uniprotkb/F1SC82" } ], "pmid": "" }, { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "F1SC82", "url": "https://www.uniprot.org/uniprotkb/F1SC82" } ], "pmid": "" }, { "name": "late endosome membrane", "id": "GO:0031902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031902", "evidence": [ { "database": "UniProtKB", "id": "F1SC82", "url": "https://www.uniprot.org/uniprotkb/F1SC82" } ], "pmid": "" }, { "name": "cytoplasmic vesicle membrane", 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"url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512552", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512552", "resource": "KEGG Pathway" }, { "id": "R-SSC-189085", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-189085", "resource": "Reactome", "description": "Digestion of dietary carbohydrate" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "Q13231-1", "protein_name": "Chitotriosidase-1", "gene_name": "CHIT1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"MVQSLAWAGVMTLLMVQWGSAAKLVCYLTNWSQYRTEAVRFFPRDVDPNLCTHVIFAFAGMDNHQLSTVEHNDELLYQELNSLKTKNPKLKTLLAVGGWTFGTQKFTDMVATASNRQTFVKSALSFLRTQGFDGLDLDWEFPGGRGSPTVDKERFTALIQDLAKAFQEEAQSSGKERLLLTAAVPSDRGLVDAGYEVDKIAQSLDFINLMAYDFHSSLEKTTGHNSPLYKRQGESGAAAEQNVDAAVTLWLQKGTPASKLILGMPTYGRSFTLASSSDNGVGAPATGPGAPGPYTKDKGVLAYYEACSWKERHRIEDQKVPYAFQDNQWVSFDDVESFKAKAAYLKQKGLGGAMVWVLDLDDFKGSFCNQGPYPLIRTLRQELNLPSETPRSPEQIIPEPRPSSMPEQGPSPGLDNFCQGKADGVYPNPGDESTYYNCGGGRLFQQSCPPGLVFRASCKCCTWS", "length": 464 }, "evidence": [ { "id": "F1S7U2", "url": "https://omabrowser.org/oma/group/F1S7U2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1S7U2", "url": "https://www.uniprot.org/uniprotkb/F1S7U2" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "F1S7U2", "url": "https://www.uniprot.org/uniprotkb/F1S7U2" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1S7U2", "url": "https://www.uniprot.org/uniprotkb/F1S7U2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "polysaccharide catabolic process", "id": "GO:0000272", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000272", "evidence": [ { "database": "UniProtKB", "id": "F1S7U2", "url": "https://www.uniprot.org/uniprotkb/F1S7U2" } ], "pmid": "" }, { "name": "chitin catabolic process", "id": "GO:0006032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006032", "evidence": [ { "database": "UniProtKB", "id": "F1S7U2", "url": "https://www.uniprot.org/uniprotkb/F1S7U2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "endochitinase activity", "id": "GO:0008843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008843", "evidence": [ { "database": "UniProtKB", "id": "F1S7U2", "url": "https://www.uniprot.org/uniprotkb/F1S7U2" } ], "pmid": "" }, { "name": "chitin binding", "id": "GO:0008061", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008061", "evidence": [ { "database": "UniProtKB", "id": "F1S7U2", "url": "https://www.uniprot.org/uniprotkb/F1S7U2" } ], "pmid": "" }, { "name": "chitinase activity", "id": "GO:0004568", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004568", "evidence": [ { "database": "UniProtKB", "id": "F1S7U2", "url": "https://www.uniprot.org/uniprotkb/F1S7U2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-6786652", "name": "CHIT1 hydrolyses CHIT to 3xADGP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "extracellular region", "input_participant_list": [ "R-ALL-6786654" ], "output_participant_list": [ "R-ALL-6786660" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6786652", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6786652" } ] }, { "id": "R-SSC-6798745", "name": "Exocytosis of tertiary granule lumen proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "extracellular region, tertiary granule lumen", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6798745", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798745" } ] }, { "id": "R-SSC-6798749", "name": "Exocytosis of specific granule lumen proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "extracellular region, specific granule lumen", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6798749", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798749" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-6786654", "participant_name": "CHIT [extracellular region]", "crossref": [ { "id": "84373", "database": "ChEBI", "url": "" }, { "id": "ZINC000056870823", "database": "ZINC", "url": "" }, { "id": "ZINC000070665912", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-ALL-6786660", "participant_name": "ADGP [extracellular region]", "crossref": [ { "id": "ZINC000003860468", "database": "ZINC", "url": "" }, { "id": "HMDB0001514", "database": "HMDB Metabolite", "url": "" }, { "id": "47977", "database": "ChEBI", "url": "" }, { "id": "G80384UV", "database": "GlyTouCan", "url": "" }, { "id": "ZINC000003860469", "database": "ZINC", "url": "" }, { "id": "C00329", "database": "COMPOUND", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S7U2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 466, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S7U2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S7U2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S7U2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7U2" }, { "id": "PS50940", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50940" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Chitin-binding type-2", "eco_id": "ECO_0000259", "start_pos": 417, "end_pos": 466, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1S7U2", "database": "UniProtKB", "url": 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V-ATPase is responsible for acidifying and maintaining the pH of intracellular compartments and in some cell types, is targeted to the plasma membrane, where it is responsible for acidifying the extracellular environment. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "F1SAA2", "url": "https://www.uniprot.org/uniprotkb/F1SAA2#function" }, { "database": "UniProtKB", "id": "RU364010", "url": "https://www.uniprot.org/uniprotkb/RU364010#function" }, { "database": "UniProtKB", "id": "ARBA00046006", "url": "https://www.uniprot.org/uniprotkb/ARBA00046006#function" }, { "database": "UniProtKB", "id": "A0A5G2QG16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG16#function" }, { "database": "UniProtKB", "id": "A0A287ATX8", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX8#function" }, { "database": "UniProtKB", "id": "A0A287B7P0", "url": "https://www.uniprot.org/uniprotkb/A0A287B7P0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ 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"https://www.uniprot.org/uniprotkb/A0A287ATX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ATX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B7P0", "url": "https://www.uniprot.org/uniprotkb/A0A287B7P0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B7P0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B7P0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG16-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAA2", "url": "https://www.uniprot.org/uniprotkb/F1SAA2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAA2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAA2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEFWLISAPGDKENLQALERMHTVTSKSNLSYNTKFTIPEFKVGTLDSLVGLSDELGKLDAFAESLIKRMAQSVVEVMEDAKGKVQENLLANGGRSLERAPLLPADLTSFVTHFEWDMAKYPVKQPLVSVVDTLAKQLAQIETDLKSRTAAYNTLKTNLENLEKKSMGNLFTRTLSDIVSKDDFVLDSEYLITLLVIVPKPSYSQWQKTYESLSDMVVPRSTKLIAEDNEGGLFTVTLFRKVIDDFKTKAKENKFTVREFYYDENEVKREREEMTRLLSDKKQQYQTSCVALKKGSSTFPDHRVKVTPLGNPDRPAAGQTDRERESEGEGEGPLLRWLKVNFSEAFIAWIHIKGLRVFVESVLRYGLPVNFQAVLLQPHKKSSTKRLREVLNSVFRHLDQVAAASILDASVEIPGLQLSNQDYFPYVYFHIDLSLFD", "length": 438, "header": "tr|F1SAA2-1|F1SAA2_PIG Isoform 1 of V-type proton ATPase subunit C OS=Sus scrofa OX=9823 GN=ATP6V1C2 PE=1 SV=3 CANONICAL=F1SAA2-1" }, "isoforms": [ { "isoform_ac": "A0A287ATX8-1", "url": "https://www.uniprot.org/uniprotkb/F1SAA2/entry#A0A287ATX8-1", "sequence": { "sequence": 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"https://www.uniprot.org/uniprotkb/F1SAA2/entry#A0A287B7P0-1", "sequence": { "sequence": "MSEFWLISAPGDKENLQALERMHTVTSKSNLSYNTKFTIPEFKVGTLDSLVGLSDELGKLDAFAESLIKRMAQSVVEVMEDAKGKVQENLLANGGLKEKMKYLKTDLTSFVTHFEWDMAKYPVKQPLVSVVDTLAKQLAQIETDLKSRTAAYNTLKTNLENLEKKSMGNLFTRTLSDIVSKDDFVLDSEYLITLLVIVPKPSYSQWQKTYESLSDMVVPRSTKLIAEDNEGGLFTVTLFRKVIDDFKTKAKENKFTVREFYYDENEVKREREEMTRLLSDKKQQYQTSCVALKKGSSTFPDHRVKVTPLGNPDRPAAGQTDRERESEGEGEGPLLRWLKVNFSEAFIAWIHIKGLRVFVESVLRYGLPVNFQAVLLQPHKKSSTKRLREVLNSVFRHLDQVAAASILDASVEIPGLQLSNQDYFPYVYFHIDLSLFD", "length": 437, "header": "tr|A0A287B7P0-1|F1SAA2_PIG Computationally mapped isoform of V-type proton ATPase subunit C OS=Sus scrofa OX=9823 GN=ATP6V1C2 PE=1 SV=2 CANONICAL=F1SAA2-1" }, "locus": { "chromosome": "3", "start_pos": 125824031, "end_pos": 125775285, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044958.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044958.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052484.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052484.2" } ] } }, { "isoform_ac": "A0A5G2QG16-1", "url": "https://www.uniprot.org/uniprotkb/F1SAA2/entry#A0A5G2QG16-1", "sequence": { "sequence": "MSEFWLISAPGDKENLQALERMHTVTSKSNLSYNTKFTIPEFKVGTLDSLVGLSDELGKLDAFAESLIKRMAQSVVEVMEDAKGKVQENLLANGADLTSFVTHFEWDMAKYPVKQPLVSVVDTLAKQLAQIETDLKSRTAAYNTLKTNLENLEKKSMGNLFTRTLSDIVSKDDFVLDSEYLITLLVIVPKPSYSQWQKTYESLSDMVVPRSTKLIAEDNEGGLFTVTLFRKVIDDFKTKAKENKFTVREFYYDENEVKREREEMTRLLSDKKQQYVTLPVFAVTPPHTLNRYGLPVNFQAVLLQPHKKSSTKRLREVLNSVFRHLDQVAAASILDASVEIPGLQLSNQDYFPYVYFHIDLSLFD", "length": 364, "header": "tr|A0A5G2QG16-1|F1SAA2_PIG Computationally mapped isoform of V-type proton ATPase subunit C OS=Sus scrofa OX=9823 GN=ATP6V1C2 PE=1 SV=1 CANONICAL=F1SAA2-1" }, "locus": { "chromosome": "3", "start_pos": 125824031, "end_pos": 125775285, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091511.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091511.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062721.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062721.1" } ] } }, { "isoform_ac": "F1SAA2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAA2/entry#F1SAA2-1", "sequence": { "sequence": "MSEFWLISAPGDKENLQALERMHTVTSKSNLSYNTKFTIPEFKVGTLDSLVGLSDELGKLDAFAESLIKRMAQSVVEVMEDAKGKVQENLLANGGRSLERAPLLPADLTSFVTHFEWDMAKYPVKQPLVSVVDTLAKQLAQIETDLKSRTAAYNTLKTNLENLEKKSMGNLFTRTLSDIVSKDDFVLDSEYLITLLVIVPKPSYSQWQKTYESLSDMVVPRSTKLIAEDNEGGLFTVTLFRKVIDDFKTKAKENKFTVREFYYDENEVKREREEMTRLLSDKKQQYQTSCVALKKGSSTFPDHRVKVTPLGNPDRPAAGQTDRERESEGEGEGPLLRWLKVNFSEAFIAWIHIKGLRVFVESVLRYGLPVNFQAVLLQPHKKSSTKRLREVLNSVFRHLDQVAAASILDASVEIPGLQLSNQDYFPYVYFHIDLSLFD", "length": 438, "header": "tr|F1SAA2-1|F1SAA2_PIG Isoform 1 of V-type proton ATPase subunit C OS=Sus scrofa OX=9823 GN=ATP6V1C2 PE=1 SV=3 CANONICAL=F1SAA2-1" }, "locus": { "chromosome": "3", "start_pos": 125824031, "end_pos": 125775285, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009446.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009446.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009203.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009203.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATX8", "url": "https://www.uniprot.org/uniprotkb/A0A287ATX8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1222556", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1222556", "resource": "Reactome", "description": "ROS and RNS production in phagocytes" }, { "id": "R-SSC-77387", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77387", "resource": "Reactome", "description": "Insulin receptor recycling" }, { "id": "R-SSC-917977", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-917977", "resource": "Reactome", "description": "Transferrin endocytosis and recycling" }, { "id": "R-SSC-9639288", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9639288", "resource": "Reactome", "description": "Amino acids regulate mTORC1" }, { "id": "R-SSC-983712", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983712", "resource": "Reactome", "description": "Ion channel transport" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "proton-transporting V-type ATPase, V1 domain", "id": "GO:0033180", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033180", "evidence": [ { "database": "UniProtKB", "id": "F1SAA2", "url": "https://www.uniprot.org/uniprotkb/F1SAA2" } ], "pmid": "" }, { "name": "vacuolar proton-transporting V-type ATPase, V1 domain", "id": "GO:0000221", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000221", "evidence": [ { "database": "UniProtKB", "id": "F1SAA2", "url": "https://www.uniprot.org/uniprotkb/F1SAA2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "proton-transporting ATPase activity, rotational mechanism", "id": "GO:0046961", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046961", "evidence": [ { "database": "UniProtKB", "id": "F1SAA2", "url": "https://www.uniprot.org/uniprotkb/F1SAA2" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SAA2", "url": "https://www.uniprot.org/uniprotkb/F1SAA2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of Wnt signaling pathway", "id": "GO:0030177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030177", "evidence": [ { "database": "UniProtKB", "id": "F1SAA2", "url": "https://www.uniprot.org/uniprotkb/F1SAA2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" }, { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAA2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 438, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAA2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAA2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 30, "end_pos": 32 }, { "start_pos": 342, "end_pos": 344 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"monoisotopic_mass": 129826.0 }, "refseq": {}, "gene_names": [ { "name": "MYT1L", "type": "recommended", "evidence": [ { "id": "F1S9J8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9J8" } ] } ], "protein_names": [ { "name": "Myelin transcription factor 1 like", "type": "synonym", "evidence": [ { "id": "F1S9J8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9J8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9J8", "url": "https://www.uniprot.org/uniprotkb/F1S9J8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYT1L", "url": "https://www.uniprot.org/uniprotkb/F1S9J8", "locus": { "chromosome": "3", "start_pos": 132294013, "end_pos": 132125508, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000029334", "url": "https://www.ensembl.org/id/ENSSSCG00000029334" } ] } } ], "crossref": [ { "id": "F1S9J8", "url": "https://alphafold.ebi.ac.uk/entry/F1S9J8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000029334", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029334", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100626723", "url": "https://www.ncbi.nlm.nih.gov/gene/100626723", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002515", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002515", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013681", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013681", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10816", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10816", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10816:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10816:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01530", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01530", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08474", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08474", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AV51", "url": "https://www.uniprot.org/uniprotkb/A0A287AV51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AV51-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV51-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BA22", "url": "https://www.uniprot.org/uniprotkb/A0A287BA22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BA22-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BA22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJU4", "url": "https://www.uniprot.org/uniprotkb/A0A287BJU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJU4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QB33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QB33-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB33-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RFR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RFR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RFR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RFR1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": 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"MEVDAEEKRHRTRSKGVRVPVEPAIQELFSCPTPGCDGSGHVSGKYARHRSVYGCPLAKKRKTQDKQPQEPAPKRKPFAVKADSSSAEDCYDSDGSEDGDEKEEDEEDEDSEDEEDEEAEREEEEEEVEDEDEDEDGEEVEDEDEDEDDEDEDEENEGRQLNCHNPRLMQDAEKDDNNNDEYDNYDELVAKSLLNLGKIAEDAAFRARTESEMNSSTSHSLEDDSDKNEPLGRKAELSLDLDSDVVRETVDSLKLLAQGHGVVLGDGAGDRGYADAGPPDGRGLNYVMLGKAANNGLAEKLAEESDEEVCLSSLECLRNQCFDLARKLSEGSPQERAPQPSAGLRPHGRPDDDFAGRTPDRNYSDMVNLMRLEEQLSPRARTFSSCAKEDGCQERDEDTASVASDRSEEVFDMTKGNLTLLEKAIALETERAKAMREKMALEAGRRDSLRSYEDPSPRPLPGEERKAKSGDSHVKKPYYGKDPSRAEKKESKCPTPGCDGTGHVTGLYPHHRSLSGCPHKDRVPPEILAMHENVLKCPTPGCTGRGHVNSNRNSHRSLSGCPIAAAEKLAKAQEKHQSCDVSKASQASDRVLRPMCFVKQLEIPHYGYRNNVPTTTPRSNLAKELEKYSKTSFEYNSYDSHTYGKRAIAPKVQTREISPKGFDAKRYCKDASPSSSTTSTYAPSSSSNLSCGGGSSASSTCSKSSFDYTHDMEAAHMAATAILNLSTRCREMPQNLSTKPQDLCSARNPDMEVDENGTLDLSMNKQRPREGCCPILTPLEPMSPQQQAVMSSRCFQLSEGDCWDLPVDYTKMKPRRIDEDESKEIAPEDLDPFQEALEERRYPGEVTIPSPKPKYPQCKEGKKDLITLSGCPLADKSIRSMLATSSQELKCPTPGCDGSGHITGNYASHRSLSGCPRAKKSGIRIAQSKEDKEDQEPIRCPVPGCDGQGHITGKYASHRSASGCPLAAKRQKDGYLNGSQFSWKSVKTEGMSCPTPGCDGSGHVSGSFLTHRSLSGCPRATSAMKKAKLSGEQMLTIRQRASNGIENDEEIKQLDEEIKELNESNSQMEADMLKLRTQVTITTMESSLKTIEEENKVIEQQNESLLHELANLSQSLIHSLANIQLPHMDPINEQNFDAYVTTLTDMYSNQDRYQSPENKALLENIKQAVRGIQV", 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"length": 1113, "header": "tr|A0A287AV51-1|F1S9J8_PIG Computationally mapped isoform of Myelin transcription factor 1 like OS=Sus scrofa OX=9823 GN=MYT1L PE=3 SV=2 CANONICAL=F1S9J8-1" }, "locus": { "chromosome": "3", "start_pos": 132291941, "end_pos": 132168043, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064273.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064273.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047746.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047746.2" } ] } }, { "isoform_ac": "A0A287BA22-1", "url": "https://www.uniprot.org/uniprotkb/F1S9J8/entry#A0A287BA22-1", "sequence": { "sequence": "MEVDAEEKRHRTRSKGVRVPVEPAIQELFSCPTPGCDGSGHVSGKYARHRSVYGCPLAKKRKTQDKQPQEPAPKRKPFAVKADSSSAEDCYDSDGSEDGDEKEEDEEDEDSEDEEDEEAEREEEEEEVEDEDEDEDGEEVEDEDEDEDDEDEDEENEGRQLNCHNPRLMQDAEKDDNNNDEYDNYDELVAKSLLNLGKIAEDAAFRARTESEMNSSTSHSLEDDSDKNEPLGRKAELSLDLDSDVVRETVDSLKLLAQGHGVVLGDGAGDRGYADAGPPDGRGLNYVMLGKAANNGLAEKLAEESDEEVCLSSLECLRNQCFDLARKLSEGSPQERAPQPSAGLRPHGRPDDDFAGRTPDRNYSDMVNLMRLEEQLSPRARTFSSCAKEDGCQERDEDTASVASDRSEEVFDMTKGNLTLLEKAIALETERAKAMREKMALEAGRRDSLRSYEDPSPRPLPGEERKAKSGDSHVKKPYYAKRYCKDASPSSSTTSTYAPSSSSNLSCGGGSSASSTCSKSSFDYTHDMEAAHMAATAILNLSTRCREMPQNLSTKPQDLCSARNPDMEVDENGTLDLSMNKQRPREGCCPILTPLEPMSPQQQAVMSSRCFQLSEGDCWDLPVDYTKMKPRRIDEDESKEIAPEDLDPFQEALEERRYPGEVTIPSPKPKYPQCKEGKKDLITLSGCPLADKSIRSMLATSSQELKCPTPGCDGSGHITGNYASHRSLSGCPRAKKSGIRIAQSKEDKEDQEPIRCPVPGCDGQGHITGKYASHRSASGCPLAAKRQKDGYLNGSQFSWKSVKTEGMSCPTPGCDGSGHVSGSFLTHRSLSGCPRATSAMKKAKLSGEQMLTIRQRASNGIENDEEIKQLDEEIKELNESNSQMEADMLKLRTQITTMESSLKTIEEENKVIEQQNESLLHELANLSQSLIHSLANIQLPHMDPINEQNFDAYVTTLTDMYSNQDRYQSPENKALLENIKQAVRGIQV", "length": 988, "header": "tr|A0A287BA22-1|F1S9J8_PIG Computationally mapped isoform of Myelin transcription factor 1 like OS=Sus scrofa OX=9823 GN=MYT1L PE=3 SV=3 CANONICAL=F1S9J8-1" }, "locus": { "chromosome": "3", "start_pos": 132291322, "end_pos": 132168043, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066391.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066391.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053387.3", "url": "https://www.ensembl.org/id/ENSSSCP00000053387.3" } ] } }, { "isoform_ac": "A0A287BJU4-1", "url": "https://www.uniprot.org/uniprotkb/F1S9J8/entry#A0A287BJU4-1", "sequence": { "sequence": "MEVDAEEKRHRTRSKGVRVPVEPAIQELFSCPTPGCDGSGHVSGKYARHRSVYGCPLAKKRKTQDKQPQEPAPKRKPFAVKADSSSAEDCYDSDGSEDGDEKEEDEEDEDSEDEEDEEAEREEEEEEVEDEDEDEDGEEVEDEDEDEDDEDEDEENEGRQLNCHNPRLMQDAEKDDNNNDEYDNYDELVAKSLLNLGKIAEDAAFRARTESEMNSSTSHSLEDDSDKNEPLGRKAELSLDLDSDVVRETVDSLKLLAQGHGVVLGDGAGDRGYADAGPPDGRGLNYVMLGKAANNGLAEKLAEESDEEVCLSSLECLRNQCFDLARKLSEGSPQERAPQPSAGLRPHGRPDDDFAGRTPDRNYSDMVNLMRLEEQLSPRARTFSSCAKEDGCQERDEDTASVASDRSEEVFDMTKGNLTLLEKAIALETERAKAMREKMALEAGRRDSLRSYEDPSPRPLPGEERKAKSGDSHVKKPYYGKDPSRAEKKESKCPTPGCDGTGHVTGLYPHHRSLSGCPHKDRVPPEILAMHENVLKCPTPGCTGRGHVNSNRNSHRSLSGCPIAAAEKLAKAQEKHQSCDVSKASQASDRVLRPMCFVKQLEIPHYGYRNNVPTTTPRSNLAKELEKYSKTSFEYNSYDSHTYGKRAIAPKVQTREISPKGFDAKRYCKDASPSSSTTSTYAPSSSSNLSCGGGSSASSTCSKSSFDYTHDMEAAHMAATAILNLSTRCREMPQNLSTKPQDLCSARNPDMEVDENGTLDLSMNKQRPREGCCPILTPLEPMSPQQQAVMSSRCFQLSEGDCWDLPVDYTKMKPRRIDEDESKEIAPEDLDPFQEALEERRYPGEVTIPSPKPKYPQCKEGKKDLITCPTPRCDGSGHVTGTYASHRSLSGCPLADKSIRSMLATSSQELKCPTPGCDGSGHITGNYASHRSLSGCPRAKKSGIRIAQSKEDKEDQEPIRCPVPGCDGQGHITGKYASHRSASGCPLAAKRQKDGYLNGSQFSWKSVKTEGMSCPTPGCDGSGHVSGSFLTHRSLSGCPRATSAMKKAKLSGEQMLTIRQRASNGIENDEEIKQLDEEIKELNESNSQMEADMLKLRTQITTMESSLKTIEEENKVIEQQNESLLHELANLSQSLIHSLANIQLPHMDPINEQNFDAYVTTLTDMYSNQDRYQSPENKALLENIKQAVRGIQV", "length": 1193, "header": "tr|A0A287BJU4-1|F1S9J8_PIG Computationally mapped isoform of Myelin transcription factor 1 like OS=Sus scrofa OX=9823 GN=MYT1L PE=3 SV=2 CANONICAL=F1S9J8-1" }, "locus": { "chromosome": "3", "start_pos": 132291322, "end_pos": 132168043, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048417.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048417.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056428.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056428.2" } ] } }, { "isoform_ac": "A0A5G2QB33-1", "url": "https://www.uniprot.org/uniprotkb/F1S9J8/entry#A0A5G2QB33-1", "sequence": { "sequence": "MEVDAEEKRHRTRSKGVRVPVEPAIQELFSCPTPGCDGSGHVSGKYARHRSVYGCPLAKKRKTQDKQPQEPAPKRKPFAVKADSSSAEDCYDSDGSEDGDEKEEDEEDEDSEDEEDEEAEREEEEEEVEDEDEDEDGEEVEDEDEDEDDEDEDEENEGRQLNCHNPRLMQDAEKDDNNNDEYDNYDELVAKSLLNLGKIAEDAAFRARTESEMNSSTSHSLEDDSDKNEPLGRKAELSLDLDSDVVRETVDSLKLLAQGHGVVLGDGAGDRGYADAGPPDGRGLNYVMLGKAANNGLAEKLAEESDEEVCLSSLECLRNQCFDLARKLSEGSPQERAPQPSAGLRPHGRPDDDFAGRTPDRNYSDMVNLMRLEEQLSPRARTFSSCAKEDGCQERDEDTASVASDRSEEVFDMTKGNLTLLEKAIALETERAKAMREKMALEAGRRDSLRSYEDPSPRPLPGEERKAKSGDSHVKKPYYAKRYCKDASPSSSTTSTYAPSSSSNLSCGGGSSASSTCSKSSFDYTHDMEAAHMAATAILNLSTRCREMPQNLSTKPQDLCSARNPDMEVDENGTLDLSMNKQRPREGCCPILTPLEPMSPQQQAVMSSRCFQLSEGDCWDLPVDYTKMKPRRIDEDESKEIAPEDLDPFQEALEERRYPGEVTIPSPKPKYPQCKEGKKDLITLSGCPLADKSIRSMLATSSQELKLPVQGPRAIDHLLMFSDLLN", "length": 726, "header": "tr|A0A5G2QB33-1|F1S9J8_PIG Computationally mapped isoform of Myelin transcription factor 1 like OS=Sus scrofa OX=9823 GN=MYT1L PE=3 SV=1 CANONICAL=F1S9J8-1" }, "locus": { "chromosome": "3", "start_pos": 132235230, "end_pos": 132168043, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073282.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073282.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061647.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061647.1" } ] } }, { "isoform_ac": "A0A5G2RFR1-1", "url": "https://www.uniprot.org/uniprotkb/F1S9J8/entry#A0A5G2RFR1-1", "sequence": { "sequence": "MEVDAEEKRHRTRSKGVRVPVEPAIQELFSCPTPGCDGSGHVSGKYARHRSVYGCPLAKKRKTQDKQPQEPAPKRKPFAVKADSSSAEDCYDSDGSEDGDEKEEDEEDEDSEDEEDEEAEREEEEEEVEDEDEDEDGEEVEDEDEDEDDEDEDEENDPSRAEKKESKCPTPGCDGTGHVTGLYPHHRSLSGCPHKDRVPPEILAMHENVLKCPTPGCTGRGHVNSNRNSHRSLSGCPIAAAEKLAKAQEKHQSCDVSKASQASDRVLRPMCFVKQLEIPHYGYRNNVPTTTPRSNLAKELEKYSKTSFEYNSYDSHTYGKRAIAPKVQTREISPKGFDAKRYCKDASPSSSTTSTYAPSSSSNLSCGGGSSASSTCSKSSFDYTHDMEAAHMAATAILNLSTRCREMPQNLSTKPQDLCSARNPDMEVDENGTLDLSMNKQRPREGCCPILTPLEPMSPQQQAVMSSRCFQLSEGDCWDLPVDYTKMKPRRIDEDESKEIAPEDLDPFQEALEERRYPGEVTIPSPKPKYPQCKEGKKDLITLSGCPLADKSIRSMLATSSQELKCPTPGCDGSGHITGNYASHRSLSGCPRAKKSGIRIAQSKEDKEDQEPIRCPVPGCDGQGHITGKYASHRSASGCPLAAKRQKDGYLNGSQFSWKSVKTEGMSCPTPGCDGSGHVSGSFLTHRSLSGCPRATSAMKKAKLSGEQMLTIRQRASNGIENDEEIKQLDEEIKELNESNSQMEADMLKLRTQITTMESSLKTIEEENKVIEQQNESLLHELANLSQSLIHSLANIQLPHMDPINEQNFDAYVTTLTDMYSNQDRYQSPENKALLENIKQAVRGIQV", "length": 847, "header": "tr|A0A5G2RFR1-1|F1S9J8_PIG Computationally mapped isoform of Myelin transcription factor 1 like OS=Sus scrofa OX=9823 GN=MYT1L PE=3 SV=1 CANONICAL=F1S9J8-1" }, "locus": { "chromosome": "3", "start_pos": 132291322, "end_pos": 132168043, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080223.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080223.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069904.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069904.1" } ] } }, { "isoform_ac": "F1S9J8-1", "url": "https://www.uniprot.org/uniprotkb/F1S9J8/entry#F1S9J8-1", "sequence": { "sequence": "MEVDAEEKRHRTRSKGVRVPVEPAIQELFSCPTPGCDGSGHVSGKYARHRSVYGCPLAKKRKTQDKQPQEPAPKRKPFAVKADSSSAEDCYDSDGSEDGDEKEEDEEDEDSEDEEDEEAEREEEEEEVEDEDEDEDGEEVEDEDEDEDDEDEDEENEGRQLNCHNPRLMQDAEKDDNNNDEYDNYDELVAKSLLNLGKIAEDAAFRARTESEMNSSTSHSLEDDSDKNEPLGRKAELSLDLDSDVVRETVDSLKLLAQGHGVVLGDGAGDRGYADAGPPDGRGLNYVMLGKAANNGLAEKLAEESDEEVCLSSLECLRNQCFDLARKLSEGSPQERAPQPSAGLRPHGRPDDDFAGRTPDRNYSDMVNLMRLEEQLSPRARTFSSCAKEDGCQERDEDTASVASDRSEEVFDMTKGNLTLLEKAIALETERAKAMREKMALEAGRRDSLRSYEDPSPRPLPGEERKAKSGDSHVKKPYYGKDPSRAEKKESKCPTPGCDGTGHVTGLYPHHRSLSGCPHKDRVPPEILAMHENVLKCPTPGCTGRGHVNSNRNSHRSLSGCPIAAAEKLAKAQEKHQSCDVSKASQASDRVLRPMCFVKQLEIPHYGYRNNVPTTTPRSNLAKELEKYSKTSFEYNSYDSHTYGKRAIAPKVQTREISPKGFDAKRYCKDASPSSSTTSTYAPSSSSNLSCGGGSSASSTCSKSSFDYTHDMEAAHMAATAILNLSTRCREMPQNLSTKPQDLCSARNPDMEVDENGTLDLSMNKQRPREGCCPILTPLEPMSPQQQAVMSSRCFQLSEGDCWDLPVDYTKMKPRRIDEDESKEIAPEDLDPFQEALEERRYPGEVTIPSPKPKYPQCKEGKKDLITLSGCPLADKSIRSMLATSSQELKCPTPGCDGSGHITGNYASHRSLSGCPRAKKSGIRIAQSKEDKEDQEPIRCPVPGCDGQGHITGKYASHRSASGCPLAAKRQKDGYLNGSQFSWKSVKTEGMSCPTPGCDGSGHVSGSFLTHRSLSGCPRATSAMKKAKLSGEQMLTIRQRASNGIENDEEIKQLDEEIKELNESNSQMEADMLKLRTQVTITTMESSLKTIEEENKVIEQQNESLLHELANLSQSLIHSLANIQLPHMDPINEQNFDAYVTTLTDMYSNQDRYQSPENKALLENIKQAVRGIQV", "length": 1174, "header": "tr|F1S9J8-1|F1S9J8_PIG Isoform 1 of Myelin transcription factor 1 like OS=Sus scrofa OX=9823 GN=MYT1L PE=3 SV=4 CANONICAL=F1S9J8-1" }, "locus": { "chromosome": "3", "start_pos": 132291322, "end_pos": 132168043, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009465.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009465.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009222.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009222.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 33, "start_aa": "Thr", "end_pos": 33, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr33", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 495, "start_aa": "Thr", "end_pos": 495, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr495", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 539, "start_aa": "Thr", "end_pos": 539, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr539", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 893, "start_aa": "Thr", "end_pos": 893, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr893", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 995, "start_aa": "Thr", "end_pos": 995, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr995", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AV51", "url": "https://www.uniprot.org/uniprotkb/A0A287AV51" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1S9J8", "url": "https://www.uniprot.org/uniprotkb/F1S9J8" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1S9J8", "url": "https://www.uniprot.org/uniprotkb/F1S9J8" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1S9J8", "url": "https://www.uniprot.org/uniprotkb/F1S9J8" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1S9J8", "url": "https://www.uniprot.org/uniprotkb/F1S9J8" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1S9J8", "url": "https://www.uniprot.org/uniprotkb/F1S9J8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S9J8", "url": "https://www.uniprot.org/uniprotkb/F1S9J8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": 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"start_pos": 133823163, "end_pos": 133808851, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053167.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053167.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057323.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057323.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BBB4", "url": "https://www.uniprot.org/uniprotkb/A0A287BBB4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8964539", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8964539", "resource": "Reactome", "description": "Glutamate and glutamine metabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MYG0-1", "protein_name": "Ornithine aminotransferase", "gene_name": "OAT", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLSKLARLQTVAGLGRGVHSSVASATSVATKKTVQGPPSSDYIFERESKYGAHNYHPLPVALERGKGIYVWDVEGRKYFDFLSAYSAVNQGHCHPKIVDALKSQVDKLTLTSRAFYNNVLGEYEEYVTKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIPKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFEIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLAIDHENVRPDIVLLGKALSGGLYPVSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENAEKMGIILRNELMKLPSDVVTTVRGKGLLNAIVIRETKDCDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDEILEAVEIINKTILSF", "length": 439 }, "evidence": [ { "id": "F1SDP3", "url": "https://omabrowser.org/oma/group/F1SDP3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F8W5L3-1", "protein_name": "Ornithine aminotransferase", "gene_name": "oat", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNSMKSLMRGVSRVTPSLTRAVHSGMRTSSSAASRAKTQERPMTSEEVFAREDRYGAHNYHPLPVALERGEGVHMWDVEGRRYFDFLSAYSAVNQGHCHPKIIAALTAQASRLTLTSRAFYNDILGAYEQYITGLFGYDKVLPMNTGVEGGETACKLARKWAYSVKGIPKYEAKIVFAAGNFWGRTMAAISSSTDPSSYDGFGPFMPGFELVPYNDIPALEKALQDPHVAAFMVEPIQGEAGVVVPDAGYLQKVRELCTKYNVLFIADEVQTGLCRTGRRLAVDHEAVRPDLVILGKALSGGVYPVSAVLCDDEVMLTIKPGEHGSTYGGNPLACRVAIAALEVLEEENLAANAERMGQILRAELNKLPREIVSGVRGKGLLNAIIIKETKDYDAWQVCLRLRDNGLLAKPTHGDIIRLAPPLTINEQEVRECVEIISRTILSF", "length": 444 }, "evidence": [ { "id": "F1SDP3", "url": "https://omabrowser.org/oma/group/F1SDP3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P04181-1", "protein_name": "Ornithine aminotransferase, mitochondrial", "gene_name": "OAT", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFSKLAHLQRFAVLSRGVHSSVASATSVATKKTVQGPPTSDDIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILSF", "length": 439 }, "evidence": [ { "id": "F1SDP3", "url": "https://omabrowser.org/oma/group/F1SDP3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P04182-1", "protein_name": "Ornithine aminotransferase, mitochondrial", "gene_name": "Oat", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSKLASLQTVAALRRGLRTSVASATSVATKKTEQGPPSSEYIFERESKYGAHNYHPLPVALERGKGIYMWDVEGRQYFDFLSAYGAVSQGHCHPKIIEAMKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYNKVLPMNTGVEAGETACKLARRWGYTVKGIQKYKAKIVFAVGNFWGRTLSAVSSSTDPTSYDGFGPFMPGFETIPYNDLPALERALQDPNVAAFMVEPIQGEAGVIVPDPGYLTGVRELCTRHQVLFIADEIQTGLARTGRWLAVDHENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRIAIAALEVLEEEHLAENADKMGAILRKELMKLPSDVVTAVRGKGLLNAIVIRETKDCDAWKVCLRLRDNGLLAKPTHGDIIRLAPPLVIKEDEIRESVEIINKTILSF", "length": 439 }, "evidence": [ { "id": "F1SDP3", "url": "https://omabrowser.org/oma/group/F1SDP3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07991-1", "protein_name": "Ornithine aminotransferase", "gene_name": "CAR2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSEATLSSKQTIEWENKYSAHNYHPLPVVFHKAKGAHVWDPEGKLYLDFLSAYSAVNQGHCHPHIIKALTEQAQTLTLSSRAFHNDVYAQFAKFVTEFFGFETVLPMNTGAEAVETALKLARRWGYMKKNIPQDKAIILGAEGNFHGRTFGAISLSTDYEDSKLHFGPFVPNVASGHSVHKIRYGHAEDFVPILESPEGKNVAAIILEPIQGEAGIVVPPADYFPKVSALCRKHNVLLIVDEIQTGIGRTGELLCYDHYKAEAKPDIVLLGKALSGGVLPVSCVLSSHDIMSCFTPGSHGSTFGGNPLASRVAIAALEVIRDEKLCQRAAQLGSSFIAQLKALQAKSNGIISEVRGMGLLTAIVIDPSKANGKTAWDLCLLMKDHGLLAKPTHDHIIRLAPPLVISEEDLQTGVETIAKCIDLL", "length": 424 }, "evidence": [ { "id": "F1SDP3", "url": "https://omabrowser.org/oma/group/F1SDP3/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29758-1", "protein_name": "Ornithine aminotransferase, mitochondrial", "gene_name": "Oat", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSKLASLQTIAALRRGVHTSVASATSVATKKTEQGPPSSEYIFERESKYGAHNYHPLPVALERGKGIYMWDVEGRQYFDFLSAYGAVSQGHCHPKIIDAMKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYNKVLPMNTGVEAGETACKLARRWGYTVKGIQKYKAKIVFADGNFWGRTLSAISSSTDPTSYDGFGPFMPGFETIPYNDLPALERALQDPNVAAFMVEPIQGEAGVIVPDPGYLTGVRELCTRHQVLFIADEIQTGLARTGRWLAVDHENVRPDMVLLGKALSGGLYPVSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRIAIAALEVLEEENLAENADKMGAILRKELMKLPSDVVTSVRGKGLLNAIVIRETKDCDAWKVCLRLRDNGLLAKPTHGDIIRLAPPLVIKEDEIRESVEIINKTILSF", "length": 439 }, "evidence": [ { "id": "F1SDP3", "url": "https://omabrowser.org/oma/group/F1SDP3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54JP5-1", "protein_name": "Probable ornithine aminotransferase", "gene_name": "oatA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDPISSQIQECTSKELIEMESEFAAHTYHPIPVVFKKASGVHVWDVEEKQYFDFLSAYSAVNQGHSHPKIVSALITQAQKCALSSRAFYNEVFPQYAKYITEYFGYEMVLPMNTGAEAVETSIKLARRWGYVKKGIAEDQAIVISCKGCFHGRTIGVISMSDDPSSYNKYGPLMNGIIKIDYNSTQQLEEVLSQHADRVCGFIVEPIQGEAGVVVPDEGYLKKCYELCKKYNVLLVADEIQTGLCRTGRMLCSDWDGIKPDLVLLGKAISGGLLPISAVLGGKDVMLTIKPGEHGSTYGGSPLASAVAMAALDVLRDENLAENAQKLGEHFRAQISNINHPAIQLVRGKGLLNAIVIDPNFTVSAWDICIKFAENGLLAKPTHDNIIRLAPPLTITLEQIDQCVSIIKKVFDSFKN", "length": 416 }, "evidence": [ { "id": "F1SDP3", "url": "https://omabrowser.org/oma/group/F1SDP3/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9VW26-1", "protein_name": "Ornithine aminotransferase, mitochondrial", "gene_name": "Oat", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFAKLSARGIATRMSFLAQKTASQETTAAAGSRSELVYARENKYGAHNYHPLPVALTKGEGVFVWDVEGKRYFDYLSAYSAVNQGHCHPKIVAALTAQASKLALTSRAFYSDVLGEYEEYVTKLFGFDKVLPMNTGVEGGETACKLARKWGYLEKKIPANQAKIIFARNNFWGRTLSAVSASNDPSSYEGFGPFMPGFELIEYDNVSALEESLKDPNVCAFMVEPIQGEAGVVVPSDGYLKKVRELCTKYNVLWIADEVQTGLARTGKLLAVDYEQVQPDILILGKALSGGMYPVSAVLCNDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVLQEEKLAENAFKMGDLLRNELSTLPKDVVSVVRGKGLLNAIVINQKFDAWEVCLRLKENGLLAKPTHGDIIRFAPPLVINETQMRESIDIIRKTILSM", "length": 431 }, "evidence": [ { "id": "F1SDP3", "url": "https://omabrowser.org/oma/group/F1SDP3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1SDP3", "url": "https://www.uniprot.org/uniprotkb/F1SDP3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SDP3", "url": "https://www.uniprot.org/uniprotkb/F1SDP3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "pyridoxal phosphate binding", "id": "GO:0030170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030170", "evidence": [ { "database": "UniProtKB", "id": "F1SDP3", "url": "https://www.uniprot.org/uniprotkb/F1SDP3" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SDP3", "url": "https://www.uniprot.org/uniprotkb/F1SDP3" } ], "pmid": "" }, { "name": "ornithine aminotransferase activity", "id": "GO:0004587", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004587", "evidence": [ { "database": "UniProtKB", "id": "F1SDP3", "url": "https://www.uniprot.org/uniprotkb/F1SDP3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "L-proline biosynthetic process", "id": "GO:0055129", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055129", "evidence": [ { "database": "UniProtKB", "id": "F1SDP3", "url": "https://www.uniprot.org/uniprotkb/F1SDP3" } ], "pmid": "" }, { "name": "L-arginine catabolic process to proline via ornithine", "id": "GO:0010121", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010121", "evidence": [ { "database": "UniProtKB", "id": "F1SDP3", "url": "https://www.uniprot.org/uniprotkb/F1SDP3" } ], "pmid": "" }, { "name": "L-arginine catabolic process to L-glutamate", "id": "GO:0019544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019544", "evidence": [ { "database": "UniProtKB", "id": "F1SDP3", "url": "https://www.uniprot.org/uniprotkb/F1SDP3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 433, "end_pos": 435, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13877", "name": "", "equation": "a 2-oxocarboxylate + L-ornithine = L-glutamate 5-semialdehyde + an L-alpha-amino acid", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13877", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13877" } ] }, { "id": "25160", "name": "", "equation": "L-ornithine + 2-oxoglutarate = L-glutamate 5-semialdehyde + L-glutamate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "25160", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/25160" } ] }, { "id": "R-SSC-70654", "name": "ornithine + alpha-ketoglutarate <=> glutamate + L-glutamate gamma-semialdehyde [OAT]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [ "R-ALL-113585" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-70654", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70654" } ] }, { "id": "R-SSC-70666", "name": "glutamate + L-glutamate gamma-semialdehyde <=> ornithine + alpha-ketoglutarate [OAT]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-70666", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70666" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-113585", "participant_name": "L-Orn [mitochondrial matrix]", "crossref": [ { "id": "46911", "database": "ChEBI", "url": "" }, { "id": "ZINC000001532530", "database": "ZINC", "url": "" }, { "id": "C00077", "database": "COMPOUND", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDP3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 439, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDP3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDP3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 433, "end_pos": 435 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SF58-1", "uniprot_ac": "F1SF58", "uniprot_id": "F1SF58_PIG", "mass": { "chemical_mass": 8433.0, "monoisotopic_mass": 8433.0 }, "refseq": { "ac": "XP_013842274", "name": "cAMP-dependent protein kinase inhibitor beta isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013842274" }, "gene_names": [ { "name": "PKIB", "type": "recommended", "evidence": [ { "id": "F1SF58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF58" } ] }, { "name": "PKIB", "type": "synonym", "evidence": [ { "id": "XP_013842274", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013842274" } ] } ], "protein_names": [ { "name": "cAMP-dependent protein kinase inhibitor", "type": "recommended", "evidence": [ { "id": "F1SF58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF58/entry#names_and_taxonomy" } ] }, { "name": "cAMP-dependent protein kinase inhibitor beta isoform X2", "type": "synonym", "evidence": [ { "id": "XP_013842274", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013842274" } ] } ], "function": [ { "annotation": "Extremely potent competitive inhibitor of cAMP-dependent protein kinase activity, this protein interacts with the catalytic subunit of the enzyme after the cAMP-induced dissociation of its regulatory chains.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BBE1", "url": "https://www.uniprot.org/uniprotkb/A0A287BBE1#function" }, { "database": "UniProtKB", "id": "ARBA00002844", "url": "https://www.uniprot.org/uniprotkb/ARBA00002844#function" }, { "database": "UniProtKB", "id": "F1SF58", "url": "https://www.uniprot.org/uniprotkb/F1SF58#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SF58", "url": "https://www.uniprot.org/uniprotkb/F1SF58" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PKIB", "url": "https://www.uniprot.org/uniprotkb/F1SF58", "locus": { "chromosome": "1", "start_pos": 39913760, "end_pos": 40022713, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004236", "url": "https://www.ensembl.org/id/ENSSSCG00000004236" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004236", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004236", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517015", "url": "https://www.ncbi.nlm.nih.gov/gene/100517015", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004171", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004171", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517015", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517015", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YQDVAMR", "url": "https://omabrowser.org/oma/group/YQDVAMR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BBE1", "url": "https://www.orthodb.org/?gene=A0A287BBE1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SF58", "url": "https://www.orthodb.org/?gene=F1SF58", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15416", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15416", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02827", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02827", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013842274", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013842274", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BBE1", "url": "https://www.uniprot.org/uniprotkb/A0A287BBE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BBE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BBE1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF58", "url": "https://www.uniprot.org/uniprotkb/F1SF58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF58-1", "url": "https://www.uniprot.org/uniprotkb/F1SF58-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRTDSSKMTDVEPVVNNFASSARAGRRNALPDIQGSPTTGGTSELPLKLEALSVKEDVKNKDEETAQDQSEKPEDEGK", "length": 78, "header": "tr|F1SF58-1|F1SF58_PIG Isoform 1 of cAMP-dependent protein kinase inhibitor OS=Sus scrofa OX=9823 GN=PKIB PE=1 SV=3 CANONICAL=F1SF58-1" }, "isoforms": [ { "isoform_ac": "A0A287BBE1-1", "url": "https://www.uniprot.org/uniprotkb/F1SF58/entry#A0A287BBE1-1", "sequence": { "sequence": "MDVHLGNPGCQESASNSLKGSGSTENQQDVAMRTDSSKMTDVEPVVNNFASSARAGRRNALPDIQGSPTTGGTSELPLKLEALSVKEDVKNKDEETAQDQSEKPEDEGK", "length": 109, "header": "tr|A0A287BBE1-1|F1SF58_PIG Computationally mapped isoform of cAMP-dependent protein kinase inhibitor OS=Sus scrofa OX=9823 GN=PKIB PE=1 SV=1 CANONICAL=F1SF58-1" }, "locus": { "chromosome": "1", "start_pos": 39938260, "end_pos": 39914947, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041271.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041271.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053849.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053849.1" } ] } }, { "isoform_ac": "F1SF58-1", "url": "https://www.uniprot.org/uniprotkb/F1SF58/entry#F1SF58-1", "sequence": { "sequence": "MRTDSSKMTDVEPVVNNFASSARAGRRNALPDIQGSPTTGGTSELPLKLEALSVKEDVKNKDEETAQDQSEKPEDEGK", "length": 78, "header": "tr|F1SF58-1|F1SF58_PIG Isoform 1 of cAMP-dependent protein kinase inhibitor OS=Sus scrofa OX=9823 GN=PKIB PE=1 SV=3 CANONICAL=F1SF58-1" }, "locus": { "chromosome": "1", "start_pos": 39920668, "end_pos": 39914947, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066086.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066086.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057111.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057111.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BBE1", "url": "https://www.uniprot.org/uniprotkb/A0A287BBE1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517015", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517015", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YH48-1", "protein_name": "Protein kinase (cAMP-dependent, catalytic) inhibitor beta", "gene_name": "PKIB", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTDVEPLVTDFAASGRAGRRNALPDILGSPAGAGTSDLPHKLAELSVSEGNEGAEGGEVSSSKALLESQEAEGKSNNS", "length": 78 }, "evidence": [ { "id": "F1SF58", "url": "https://omabrowser.org/oma/group/F1SF58/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7FBB8-1", "protein_name": "cAMP-dependent protein kinase inhibitor beta isoform X1", "gene_name": "Pkib", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDKNLDDLGGQKETSDSSKGSDSPGSQQDAVMRTDSSEMTDVESVISTFAASARAGRRNALADIQTLDVTGGTSDLPLKLEALTVKEDVKKKNEEKAQDQPEKTLNEEK", "length": 109 }, "evidence": [ { "id": "F1SF58", "url": "https://omabrowser.org/oma/group/F1SF58/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P27775-1", "protein_name": "cAMP-dependent protein kinase inhibitor beta", "gene_name": "Pkib", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTDVESVISSFASSARAGRRNALPDIQSSLATGGSPDLALKLEALAVKEDAKMKNEEKDQGQPKKPLDEDK", "length": 71 }, "evidence": [ { "id": "F1SF58", "url": "https://omabrowser.org/oma/group/F1SF58/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5SPN9-1", "protein_name": "cAMP-dependent protein kinase inhibitor", "gene_name": "pkib", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTDVEPVVSDFAATGRTGRRNALPDILGSTAGPGAADLPDKLAELTVGDDGEQGGESSSSTDPPKESTEGAKTEGS", "length": 76 }, "evidence": [ { "id": "F1SF58", "url": "https://omabrowser.org/oma/group/F1SF58/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9C010-1", "protein_name": "cAMP-dependent protein kinase inhibitor beta", "gene_name": "PKIB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRTDSSKMTDVESGVANFASSARAGRRNALPDIQSSAATDGTSDLPLKLEALSVKEDAKEKDEKTTQDQLEKPQNEEK", "length": 78 }, "evidence": [ { "id": "F1SF58", "url": "https://omabrowser.org/oma/group/F1SF58/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cAMP-dependent protein kinase inhibitor activity", "id": "GO:0004862", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004862", "evidence": [ { "database": "UniProtKB", "id": "F1SF58", "url": "https://www.uniprot.org/uniprotkb/F1SF58" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SF58", "url": "https://www.uniprot.org/uniprotkb/F1SF58" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SF58", "url": "https://www.uniprot.org/uniprotkb/F1SF58" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S923-1", "uniprot_ac": "F1S923", "uniprot_id": "F1S923_PIG", "mass": { "chemical_mass": 59993.0, "monoisotopic_mass": 59993.0 }, "refseq": {}, "gene_names": [ { "name": "KCNN1", "type": "recommended", "evidence": [ { "id": "F1S923", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S923" } ] } ], "protein_names": [ { "name": "Potassium calcium-activated channel subfamily N member 1", "type": "synonym", "evidence": [ { "id": "F1S923", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S923/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S923", "url": "https://www.uniprot.org/uniprotkb/F1S923" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCNN1", "url": "https://www.uniprot.org/uniprotkb/F1S923", "locus": { "chromosome": "2", "start_pos": 59780013, "end_pos": 59817059, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013892", "url": "https://www.ensembl.org/id/ENSSSCG00000013892" } ] } } ], "crossref": [ { "id": "F1S923", "url": "https://alphafold.ebi.ac.uk/entry/F1S923", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013892", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013892", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519132", "url": "https://www.ncbi.nlm.nih.gov/gene/100519132", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013099", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013099", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015449", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015449", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036122", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036122", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A287BKI2", "url": "https://www.orthodb.org/?gene=A0A287BKI2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10153", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10153", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02888", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02888", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03530", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03530", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07885", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07885", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1296052", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1296052", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BKI2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKI2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0Q9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Q9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0Q9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0Q9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S923", "url": "https://www.uniprot.org/uniprotkb/F1S923", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S923-1", "url": "https://www.uniprot.org/uniprotkb/F1S923-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNSHRHNGCGGRPLGGGLGALARDPPDPEAGHPPQPPNGPGIQVVVAKNEPAQPSPSSPRGQPQDQEEEEDEEEDEAGQQGGSGKPPSVGHRLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESLYSFALKCLISLSTVILLGLVVLYHAREIQLFMVDNGADDWRIAMTCERVFLISLELAVCAIHPVPGHYRFTWTARLAFTYAPSAAEADVDVLLSVPMFLRLYLLGRVMLLHSKIFTDASSRSIGALNKITFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDHARVRKHQRKFLQAIHQAQKLRSVKIEQGKLNDQTNTLADLAKTQNVMYDLMSELHAQHEELEVRLAALESRLDALGTSLQALPGLIAQAIRPPPPPLPPRPGPGPSDQVTRSSPHRWPPVAPSDCG", "length": 543, "header": "tr|F1S923-1|F1S923_PIG Isoform 1 of Potassium calcium-activated channel subfamily N member 1 OS=Sus scrofa OX=9823 GN=KCNN1 PE=4 SV=4 CANONICAL=F1S923-1" }, "isoforms": [ { "isoform_ac": "A0A287BKI2-1", "url": "https://www.uniprot.org/uniprotkb/F1S923/entry#A0A287BKI2-1", "sequence": { "sequence": "MNSHRHNGCGGRPLGGGLGALARDPPDPEAGHPPQPPNGPGIQVVVAKNEPAQPSPSSPRGQPQDQEEEEDEEEDEAGQQGGSGKPPSVGHRLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESLYSFALKCLISLSTVILLGLVVLYHAREIQLFMVDNGADDWRIAMTCERVFLISLELAVCAIHPVPGHYRFTWTARLAFTYAPSAAEADVDVLLSVPMFLRLYLLGRVMLLHSKIFTDASSRSIGALNKITFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERENMYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDHARVRKHQRKFLQAIHQAQKLRSVKIEQGKLNDQTNTLADLAKTQNVMYDLMSELHAQHEELEVRLAALESRLDALGTSLQALPGLIAQAIRPPPPPLPPRPGPGPSDQVTRSSPHRWPPVAPSDCG", "length": 546, "header": "tr|A0A287BKI2-1|F1S923_PIG Computationally mapped isoform of Potassium calcium-activated channel subfamily N member 1 OS=Sus scrofa OX=9823 GN=KCNN1 PE=4 SV=2 CANONICAL=F1S923-1" }, "locus": { "chromosome": "2", "start_pos": 59801726, "end_pos": 59780375, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057624.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057624.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056588.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056588.2" } ] } }, { "isoform_ac": "A0A5G2R0Q9-1", "url": "https://www.uniprot.org/uniprotkb/F1S923/entry#A0A5G2R0Q9-1", "sequence": { "sequence": "MNSHRHNGCGGRPLGGGLGALARDPPDPEAGHPPQPPNGPGIQVVVAKNEPAQPSPSSPRGQPQDQEEEEDEEEDEAGQQGGSGKPPSVGHRLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESLYSFALKCLISLSTVILLGLVVLYHAREIQLFMVDNGADDWRIAMTCERVFLISLELAVCAIHPVPGHYRFTWTARLAFTYAPSAAEADVDVLLSVPMFLRLYLLGRVMLLHSKIFTDASSRSIGALNKITFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERENMYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDHARVRKHQRKFLQAIHQLRSVKIEQGKLNDQTNTLADLAKTQNVMYDLMSELHAQHEELEVRLAALESRLDALGTSLQALPGLIAQAIRPPPPPLPPRPGPGPSDQVTRSSPHRWPPVAPSDCG", "length": 543, "header": "tr|A0A5G2R0Q9-1|F1S923_PIG Computationally mapped isoform of Potassium calcium-activated channel subfamily N member 1 OS=Sus scrofa OX=9823 GN=KCNN1 PE=4 SV=2 CANONICAL=F1S923-1" }, "locus": { "chromosome": "2", "start_pos": 59801726, "end_pos": 59780375, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090925.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090925.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067791.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067791.2" } ] } }, { "isoform_ac": "F1S923-1", "url": "https://www.uniprot.org/uniprotkb/F1S923/entry#F1S923-1", "sequence": { "sequence": "MNSHRHNGCGGRPLGGGLGALARDPPDPEAGHPPQPPNGPGIQVVVAKNEPAQPSPSSPRGQPQDQEEEEDEEEDEAGQQGGSGKPPSVGHRLGHRRALFEKRKRLSDYALIFGMFGIVVMVTETELSWGVYTKESLYSFALKCLISLSTVILLGLVVLYHAREIQLFMVDNGADDWRIAMTCERVFLISLELAVCAIHPVPGHYRFTWTARLAFTYAPSAAEADVDVLLSVPMFLRLYLLGRVMLLHSKIFTDASSRSIGALNKITFNTRFVMKTLMTICPGTVLLVFSISSWIIAAWTVRVCERYHDKQEVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKPDHARVRKHQRKFLQAIHQAQKLRSVKIEQGKLNDQTNTLADLAKTQNVMYDLMSELHAQHEELEVRLAALESRLDALGTSLQALPGLIAQAIRPPPPPLPPRPGPGPSDQVTRSSPHRWPPVAPSDCG", "length": 543, "header": "tr|F1S923-1|F1S923_PIG Isoform 1 of Potassium calcium-activated channel subfamily N member 1 OS=Sus scrofa OX=9823 GN=KCNN1 PE=4 SV=4 CANONICAL=F1S923-1" }, "locus": { "chromosome": "2", "start_pos": 59801726, "end_pos": 59780375, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015178.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015178.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014772.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014772.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKI2", "url": "https://www.uniprot.org/uniprotkb/A0A287BKI2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1296052", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1296052", "resource": "Reactome", "description": "Ca2+ activated K+ channels" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calmodulin binding", "id": "GO:0005516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005516", "evidence": [ { "database": "UniProtKB", "id": "F1S923", "url": "https://www.uniprot.org/uniprotkb/F1S923" } ], "pmid": "" }, { "name": "small conductance calcium-activated potassium channel activity", "id": "GO:0016286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016286", "evidence": [ { "database": "UniProtKB", "id": "F1S923", "url": "https://www.uniprot.org/uniprotkb/F1S923" } ], "pmid": "" }, { "name": "inward rectifier potassium channel activity", "id": "GO:0005242", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005242", "evidence": [ { "database": "UniProtKB", "id": "F1S923", "url": "https://www.uniprot.org/uniprotkb/F1S923" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1S923", "url": "https://www.uniprot.org/uniprotkb/F1S923" } ], "pmid": "" }, { "name": "Z disc", "id": "GO:0030018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030018", "evidence": [ { "database": "UniProtKB", "id": "F1S923", "url": "https://www.uniprot.org/uniprotkb/F1S923" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S923", "url": "https://www.uniprot.org/uniprotkb/F1S923" } ], "pmid": "" }, { "name": "neuronal cell body", "id": "GO:0043025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043025", "evidence": [ { "database": "UniProtKB", "id": "F1S923", "url": "https://www.uniprot.org/uniprotkb/F1S923" } ], "pmid": "" }, { "name": "neuron projection", "id": "GO:0043005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043005", "evidence": [ { "database": "UniProtKB", "id": "F1S923", "url": "https://www.uniprot.org/uniprotkb/F1S923" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "potassium ion transmembrane transport", "id": "GO:0071805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071805", "evidence": [ { "database": "UniProtKB", "id": "F1S923", "url": "https://www.uniprot.org/uniprotkb/F1S923" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S923-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 543, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S923-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S923" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S923", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S923" }, { "id": "SM01053", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01053" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calmodulin-binding", "eco_id": "ECO_0000259", "start_pos": 384, "end_pos": 463, "start_aa": "Asp", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"name": "tectonic-3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001927669", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927669" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SC46", "url": "https://www.uniprot.org/uniprotkb/F1SC46" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TCTN3", "url": "https://www.uniprot.org/uniprotkb/F1SC46", "locus": { "chromosome": "14", "start_pos": 107230934, "end_pos": 107263344, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010496", "url": "https://www.ensembl.org/id/ENSSSCG00000010496" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010496", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010496", "database": "Bgee", "categories": [ 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"categories": [ "Protein Classification" ] }, { "id": "PTHR14611", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14611", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14611:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14611:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07773", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07773", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25752", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25752", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5620912", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001927669", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927669", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": 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"https://www.uniprot.org/uniprotkb/A0A8W4FDX2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGF7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGF7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC46", "url": "https://www.uniprot.org/uniprotkb/F1SC46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC46-1", "url": "https://www.uniprot.org/uniprotkb/F1SC46-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFASLLSLLQVLFLMIPEGVQPQPSPSPSGAVPTHLNVGPRTQGGTLQSSSEGTETPWAVPGTSTVGPNVVTPSAPGNGTVDVFPVLPICVCDLTPGTCDINCCCDKDCYLLHPRTVFSFCLPGSVRSSSWVCVDNSLIFRSNSPFPSRVFMDSNGIKQFCVHVNNSKLNYFQKLQKVNATNFQALATEFGGESFTSTFQTPSPPPFYRAGDPILTYFPKWSIISLLRQPAGVGAGGLCAESNPAGFLESESTTCARFFENLTDSCTLEPALNAASYYNFTVLKVPRGVSDLQNTKFQVPVTLVSQAGPPLLAGNTCQNVVSKVVYEIETNGTFGIQKVSVSFEQTNLTVKPSTSLQQHFIIRFRAFQQNTAAALSGPRSGNPGYIVGKPLLALSGGIKHSMTLLQSQGDGTCSVKRHEVQFGVNAISGCKLRLERVDCSRLQQKIYQTLDGGPRPEHVAIFGNADPAQKEEWTRILSRNCNVSARHCTSCCVIPVSLEIQILWAYIGLQSNPQAHVLRTRFLYQCQSMQDSQQETEVSLTTVVTFVDVTQKPEPPRGQPRVDWKLPFDFFFPFKVAFSRVDSQKGSVSPILTLCLLLLGVLNLETK", "length": 607, "header": "tr|F1SC46-1|F1SC46_PIG Isoform 1 of Tectonic family member 3 OS=Sus scrofa OX=9823 GN=TCTN3 PE=3 SV=1 CANONICAL=F1SC46-1" }, "isoforms": [ { "isoform_ac": "A0A287BM23-1", "url": "https://www.uniprot.org/uniprotkb/F1SC46/entry#A0A287BM23-1", "sequence": { "sequence": "MFASLLSLLQVLFLMIPEGVQPQPSPSPSGAVPTHLNVGPRTQGGTLQSSSEGTETPWAVPGTSTVGPNVVTPSAPGNGTVDVFPVLPICVCDLTPGTCDINCCCDKDCYLLHPRTVFSFCLPGSVRSSSWVCVDNSLIFRSNSPFPSRVFMDSNGIKQFCVHVNNSKLNYFQKLQKVNATNFQALATEFGGESFTSTFQTPSPPPFYRAGDPILTYFPKWSIISLLRQPAGVGAGGLCAESNPAGFLESESTTCARFFENLTDSCTLEPALNAASYYNFTVLKVPRGVSDLQNTKVVYEIETNGTFGIQKVSVSFEQTNLTVKPSTSLQQHFIIRFRAFQQNTAAALSGPRSGNPGYIVGKPLLALSGGIKHSSQGDGTCSVKRHEVQFGVNAISGCKLRLERVDCSRLQQKIYQTLDGGPRPEHVAIFGNADPAQKEEWTRILSRNCNVSARHCTSCCVIPVSLEIQILWAYIGLQSNPQAHVLRTRFLYQCQSMQDSQQETEVSLTTVVTFVDVTQKPEPPRGQPRVDWKLPFDFFFPFKVAFSRVDSQKGSVSPILTLCLLLLGVLNLETK", "length": 575, "header": "tr|A0A287BM23-1|F1SC46_PIG Computationally mapped isoform of Tectonic family member 3 OS=Sus scrofa OX=9823 GN=TCTN3 PE=3 SV=2 CANONICAL=F1SC46-1" }, "locus": { "chromosome": "14", "start_pos": 107263257, "end_pos": 107232122, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059487.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059487.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057554.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057554.2" } ] } }, { "isoform_ac": "A0A5G2R065-1", "url": "https://www.uniprot.org/uniprotkb/F1SC46/entry#A0A5G2R065-1", "sequence": { "sequence": "MFASLLSLLQVLFLMIPEGVQPQPSPSPSGAVPTHLNVGPRTQGGTLQSSSEGTETPWAVPGTSTVGPNVVTPSAPGNGTVDVFPVLPICVCDLTPGTCDINCCCDKDCYLLHPRTVFSFCLPGSVRSSSWVCVDNSLIFRSNSPFPSRVFMDSNGIKQFCVHVNNSKLNYFQKLQKVNATNFQALATEFGGESFTSTFQTPSPPPFYRAGDPILTYFPKWSIISLLRQPAGVGAGGLCAESNPAGFLESESTTCARFFENLTDSCTLEPALNAASYYNFTVLKVPRGVSDLQNTKFQVPVTLVSQAGPPLLAGNTCQNVVSKVVYEIETNGTFGIQKVSVSFEQTNLTVKPSTSLQQHFIIRFRAFQQNTAAALSGPRSGNPGYIVGKPLLALSGGIKHSVSFSDVGDLLQPNGKSYKGFRTCVRVVEGEEPFVHFNILICC", "length": 443, "header": "tr|A0A5G2R065-1|F1SC46_PIG Computationally mapped isoform of Tectonic family member 3 OS=Sus scrofa OX=9823 GN=TCTN3 PE=3 SV=1 CANONICAL=F1SC46-1" }, "locus": { "chromosome": "14", "start_pos": 107263257, "end_pos": 107253011, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073253.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073253.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063900.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063900.1" } ] } }, { "isoform_ac": "A0A5G2R3Z2-1", "url": "https://www.uniprot.org/uniprotkb/F1SC46/entry#A0A5G2R3Z2-1", "sequence": { "sequence": "MFASLLSLLQVLFLMIPEGVQPQPSPSPSGAVPTHLNVGPRTQGGTLQSSSEGTETPWAVPGTSTVGPNVVTPSAPGNGTVDVFPVLPICVCDLTPGTCDINCCCDKDCYLLHPRTVFSFCLPGSVRSSSWVCVDNSLIFRSNSPFPSRVFMDSNGIKQFCVHVNNCFLESESTTCARFFENLTDSCTLEPALNAASYYNFTVLKVPRGVSDLQNTKAFQQNTAAALSGPRSGNPGYIVGKPLLALSGGIKHSMTLLQSQGDGTCSVKRHEVQFGVNAISGCKLRLERVDCSRLQQKIYQTLDGGPRPEHVAIFGNADPAQKEEWTRILSRNCNVSARHCTSCCVIPVSLEIQILWAYIGLQSNPQAHVLRTRFLYQCQSMQDSQQETEVSLTTVVTFVDVTQKPEPPRGQPRVDWKLPFDFFFPFKVAFSRVDSQKGSVSPILTLCLLLLGVLNLETK", "length": 459, "header": "tr|A0A5G2R3Z2-1|F1SC46_PIG Computationally mapped isoform of Tectonic family member 3 OS=Sus scrofa OX=9823 GN=TCTN3 PE=3 SV=1 CANONICAL=F1SC46-1" }, "locus": { "chromosome": "14", "start_pos": 107263257, "end_pos": 107232122, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067858.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067858.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065272.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065272.1" } ] } }, { "isoform_ac": "A0A8W4FDX2-1", "url": "https://www.uniprot.org/uniprotkb/F1SC46/entry#A0A8W4FDX2-1", "sequence": { "sequence": "MFASLLSLLQVLFLMIPEGVQPQPSPSPSGAVPTHLNVGPRTQGGTLQSSSEGTETPWAVPGTSTVGPNVVTPSAPGNGTVDVFPVLPICVCDLTPGTCDINCCCDKDCYLLHPRTVFSFCLPGSVRSSSWVCVDNSLIFRSNSPFPSRVFMDSNGIKQFCVHVNNSKLNYFQKLQKVNATNFQALATEFGGESFTSTFQTPSPPPFYRAGDPILTYFPKWSIISLLRQPAGVGAGGLCAESNPAGFLESESTTCARFFENLTDSCTLEPALNAASYYNFTVLKVPRGVSDLQNTKFQVPVTLVSQAGPPLLAGNTCQNVVSKVVYEIETNGTFGIQKVSVSFEQTNLTVKPSTSLQQHFIIRFRAFQQNTAAALSGPRSGNPGYIVGKPLLALSGGIKHSARHCTSCCVIPVSLEIQILWAYIGLQSNPQAHVLRTRFLYQCQSMQDSQQETEVSLTTVVTFVDVTQKPEPPRGQPRVDWKLPFDFFFPFKVAFSRVDSQKGSVSPILTLCLLLLGVLNLETK", "length": 524, "header": "tr|A0A8W4FDX2-1|F1SC46_PIG Computationally mapped isoform of Tectonic family member 3 OS=Sus scrofa OX=9823 GN=TCTN3 PE=3 SV=1 CANONICAL=F1SC46-1" }, "locus": { "chromosome": "14", "start_pos": 107263257, "end_pos": 107232122, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096532.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096532.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077616.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077616.1" } ] } }, { "isoform_ac": "A0A8W4FGF7-1", "url": "https://www.uniprot.org/uniprotkb/F1SC46/entry#A0A8W4FGF7-1", "sequence": { "sequence": "MFASLLSLLQVLFLMIPEGVQPQPSPSPSGAVPTHLNVGPRTQGGTLQSSSEGTETPWAVPGTSTVGPNVVTPSAPGNGTVDVFPVLPICVCDLTPGTCDINCCCDKDCYLLHPRTVFSFCLPGSVRSSSWVCVDNSLIFRSNSPFPSRVFMDSNGIKQFCVHVNNCFLESESTTCARFFENLTDSCTLEPALNAASYYNFTVLKVPRGVSDLQNTKFQVPVTLVSQAGPPLLAGNTCQNVVSKVVYEIETNGTFGIQKVSVSFEQTNLTVKPSTSLQQHFIIRFRAFQQNTAAALSGPRSGNPGYIVGKPLLALSGGIKHSSQGDGTCSVKRHEVQFGVNAISGCKLRLERVDCSRLQQKIYQTLDGGPRPEHVAIFGNADPAQKEEWTRILSRNCNVSARHCTSCCVIPVSLEIQILWAYIGLQSNPQAHVLRTRFLYQCQSMQDSQQETEVSLTTVVTFVDVTQKPEPPRGQPRVDWKLPFDFFFPFKVAFSRVDSQKGSVSPILTLCLLLLGVLNLETK", "length": 523, "header": "tr|A0A8W4FGF7-1|F1SC46_PIG Computationally mapped isoform of Tectonic family member 3 OS=Sus scrofa OX=9823 GN=TCTN3 PE=3 SV=1 CANONICAL=F1SC46-1" }, "locus": { "chromosome": "14", "start_pos": 107263257, "end_pos": 107232122, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101799.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101799.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078515.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078515.1" } ] } }, { "isoform_ac": "F1SC46-1", "url": "https://www.uniprot.org/uniprotkb/F1SC46/entry#F1SC46-1", "sequence": { "sequence": "MFASLLSLLQVLFLMIPEGVQPQPSPSPSGAVPTHLNVGPRTQGGTLQSSSEGTETPWAVPGTSTVGPNVVTPSAPGNGTVDVFPVLPICVCDLTPGTCDINCCCDKDCYLLHPRTVFSFCLPGSVRSSSWVCVDNSLIFRSNSPFPSRVFMDSNGIKQFCVHVNNSKLNYFQKLQKVNATNFQALATEFGGESFTSTFQTPSPPPFYRAGDPILTYFPKWSIISLLRQPAGVGAGGLCAESNPAGFLESESTTCARFFENLTDSCTLEPALNAASYYNFTVLKVPRGVSDLQNTKFQVPVTLVSQAGPPLLAGNTCQNVVSKVVYEIETNGTFGIQKVSVSFEQTNLTVKPSTSLQQHFIIRFRAFQQNTAAALSGPRSGNPGYIVGKPLLALSGGIKHSMTLLQSQGDGTCSVKRHEVQFGVNAISGCKLRLERVDCSRLQQKIYQTLDGGPRPEHVAIFGNADPAQKEEWTRILSRNCNVSARHCTSCCVIPVSLEIQILWAYIGLQSNPQAHVLRTRFLYQCQSMQDSQQETEVSLTTVVTFVDVTQKPEPPRGQPRVDWKLPFDFFFPFKVAFSRVDSQKGSVSPILTLCLLLLGVLNLETK", "length": 607, "header": "tr|F1SC46-1|F1SC46_PIG Isoform 1 of Tectonic family member 3 OS=Sus scrofa OX=9823 GN=TCTN3 PE=3 SV=1 CANONICAL=F1SC46-1" }, "locus": { "chromosome": "14", "start_pos": 107263257, "end_pos": 107232122, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011484.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011484.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011183.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011183.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 72, "start_aa": "Thr", "end_pos": 72, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr72", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FDX2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDX2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157208", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157208", "resource": "KEGG Pathway" }, { "id": "R-SSC-5620912", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "resource": "Reactome", "description": "Anchoring of the basal body to the plasma membrane" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JTR3-1", "protein_name": "Tectonic family member 3", "gene_name": "Tctn3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCTPQLLLLLLLLLLVGLMLSDAARPQPSSTARALPTSWVLGPVTPEVPTTAPPDLSESPTPWTLSMPENATTDPFPALSICVCDLTPGTCDLNCCCDKDCDLLHPRTVFSFCLPGSVRSSSWVCVDNSLVFRSNSPFPSRVFTDSSGITQFCVRVNNSKSNYFQELQTVNATNFQALAAEFGGQFFTSTPKTQPPGPFYRAGDPILIYYPGLSVVSLLRQPAAVGAGGLCAESNPAGFLESKSTTCARFFKDLTSSCTSEPALDAASYHNFRVLKVPRAMTDLQSMKFQVPVTLASQTSPPLLAGNTCQNIVSQVIYEIETNGTFGIQKVSVSFRQTNLTVKPGVSLQQDFIIHFRAFQQREAASPAAPRSGNPGYLTGKPLLVLTGDLSHSMTLLQSEGNGLCSAKRHEVQFGVNTVSGCQLRPKEVNCSHLQEEIYQTLHGRPRPEHVAIFGNADPAQKGGWTRILSKNCRVSTVNCTSCCVIPVSLEIQVLWAHLGLQSNPQAHVAGARFLYQCKSVQELQRGIEVSLMTLVNFMDLTQKPEPPRDQPRPDWKLPFDFFFPFKVAFSRGASVQKDSSSLILILCVFLLGLLNSQT", "length": 599 }, "evidence": [ { "id": "F1SC46", "url": "https://omabrowser.org/oma/group/F1SC46/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AAA9TXZ5-1", "protein_name": "Tectonic family member 3", "gene_name": "TCTN3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFSLKLSLLQVFFLMVPERVLSQPSPSPSRAMPTHSELGPRTQGGTLQSSEVPGISTAGPTVVTSSTPGNKTVDLFPVLPICVCDLTPGACDINCCCDSDCYLLHPRTVFSFCLPGSVRSASWVCVDNSLIFRSNSPFPSRVFIDSNGIKQFCVHVNNSRLNYLQKLQKVNATNFQALATEFGGESFTSTSQTQSPPSFYRAGDPILTYFPKWSVISLLRQPAGVGAGGLCAKSNPAGFLESKSTTCARFFKNLADSCTSDPALNAASYYNFTVLKVPRGMSDLQNMELQVPVTPVSQAGSPVLAGNTCQNVVAQVIYEIETNGTFGIQKVSVSFGQTNLTVEPRTSLQQDFIIHFRAFQQSTAASLTGSRSGNPGYIVGKPLLVLTGDMRHSMTLLQSQGDGTCSIKRHEVQFGVNAISGCKLRLKRVDCSHLQQELYQALHGSPRPEHIAIFGNADPAQKGEWTRILSRNYSVSAMHCTSCCVIPVSLEIQILWAYIGLQSNPQAHVSGARFLYQLQSIQDSQPKTEVPLKTVVTFVDITQKPEPPRGQPRMDWKYPFDFFFPFKMAFSRGEGSQKGSIFPIIILCLLLLGVLNHRD", "length": 599 }, "evidence": [ { "id": "F1SC46", "url": "https://omabrowser.org/oma/group/F1SC46/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HXX7-1", "protein_name": "Tectonic-3", "gene_name": "Tctn3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCTPQLHLLTVLALMLPDAAGPQPSPTQALPTSSALGPETPEVATAAPPPDWSEGPTPWTPPMPENVTTDLLPALPICICDLTPGTCDLNCCCDKDCDLDHPRTVFSFCLPGSVRSSSWVCVDNSLIFRSNSPFPSRVFTDASGITQFCVRVNNSKLNYFQKLQTVNATNFQALAAEFGGPSFTWTSETQPPLPFYRAGHPILTYYPSWSVVSSLRQPAAVGAGGFCAESNPAGFLESKSTTCTRFFRDLASSCTSEPALDAATYYNFTVLKVPRGMTDLQNTKLQVPVTLASQTRPPLLSGNTCQNIVSQVIYEIETNGTSGIQKVSVSFRQTNLTVKPGVSLQQDFIIHFRAFGQRMDAFPTGPRSGNPGYLIGKPLLVLTGDFRHSMTLLQSEGNGMCSVKRHEIQFGVNTVSGCKLRPKEVSCSHLQKEIYQALHGHPKPEHVAIFGNADPAQRGGWSRILSKDCSVSAVNCTSCCYIPVSLEIQVLWAHIGLQSNPQAHVAGTRFLYQCRSVQEHQKGTEISLTTLVSFVDITQKPEPPRDQPRTDWKLPFDFFFPFKVAFSRGASIQKGSASPALILCVFLLGVLNSQTT", "length": 596 }, "evidence": [ { "id": "F1SC46", "url": "https://omabrowser.org/oma/group/F1SC46/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6NUS6-1", "protein_name": "Tectonic-3", "gene_name": "TCTN3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRTPQLALLQVFFLVFPDGVRPQPSSSPSGAVPTSLELQRGTDGGTLQSPSEATATRPAVPGLPTVVPTLVTPSAPGNRTVDLFPVLPICVCDLTPGACDINCCCDRDCYLLHPRTVFSFCLPGSVRSSSWVCVDNSVIFRSNSPFPSRVFMDSNGIRQFCVHVNNSNLNYFQKLQKVNATNFQALAAEFGGESFTSTFQTQSPPSFYRAGDPILTYFPKWSVISLLRQPAGVGAGGLCAESNPAGFLESKSTTCTRFFKNLASSCTLDSALNAASYYNFTVLKVPRSMTDPQNMEFQVPVILTSQANAPLLAGNTCQNVVSQVTYEIETNGTFGIQKVSVSLGQTNLTVEPGASLQQHFILRFRAFQQSTAASLTSPRSGNPGYIVGKPLLALTDDISYSMTLLQSQGNGSCSVKRHEVQFGVNAISGCKLRLKKADCSHLQQEIYQTLHGRPRPEYVAIFGNADPAQKGGWTRILNRHCSISAINCTSCCLIPVSLEIQVLWAYVGLLSNPQAHVSGVRFLYQCQSIQDSQQVTEVSLTTLVNFVDITQKPQPPRGQPKMDWKWPFDFFPFKVAFSRGVFSQKCSVSPILILCLLLLGVLNLETM", "length": 607 }, "evidence": [ { "id": "F1SC46", "url": "https://omabrowser.org/oma/group/F1SC46/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R2Q6-1", "protein_name": "Tectonic-3", "gene_name": "Tctn3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCTLQLHLLLLVVLMLSETARPQPSSTARAFPTSWGLEPVTPEVPTSAPPDSSESPTPWTLSMPVNATTDPFPALPICVCDLTPGTCDLNCCCDKDCDLLHPRTVFSFCLPGSVRSSSWVCVDNSLMFRSNSPFPSRVFTDSSGTTQFCVRVNNSKANYFQKLQTVNATNFQALAAEFGGQSFPSMPPETQPPVLFYRAGDPILTYYPSWSVVSLLRQPAAVGAGGLCAESNPAGFLESKSTTCPRFFRDLASSCTSEPALDAASYYNFRVLKVPRGVTDLQNMKFQVPVTLASQASPPLLAGNTCQNIVSQVVYEIETNGTFGIQKVSVSFRQTNLTVKPGVSLQQDFIVHFRAFQQRKAAAPAAPRSGNPGYLTGKPLLVLTGDTSHSMTLLQSEGNGLCSAKRHAVQFGVNAVSGCQLRPREVNCSHLQEEVYQTLHGRPRPEHVAVFGNADPAQRGGWTRILSRDCSVSAVNCTSCCLIPVSLEIQVLWAHLGLQSNPQAHVAGARFLYQCKSVQEHQRGIEVSLTTLVNFVDITQKPEPPRDQPRIDWKLPFDFFFPFKAALSRGASVQKDSLVLILCVLLLGLLNSQTK", "length": 595 }, "evidence": [ { "id": "F1SC46", "url": "https://omabrowser.org/oma/group/F1SC46/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cell projection organization", "id": "GO:0030030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030030", "evidence": [ { "database": "UniProtKB", "id": "F1SC46", "url": "https://www.uniprot.org/uniprotkb/F1SC46" } ], "pmid": "" }, { "name": "positive regulation of apoptotic process", "id": "GO:0043065", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043065", "evidence": [ { "database": "UniProtKB", "id": "F1SC46", "url": "https://www.uniprot.org/uniprotkb/F1SC46" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "F1SC46", "url": "https://www.uniprot.org/uniprotkb/F1SC46" } ], "pmid": "" }, { "name": "smoothened signaling pathway", "id": "GO:0007224", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007224", "evidence": [ { "database": "UniProtKB", "id": "F1SC46", "url": "https://www.uniprot.org/uniprotkb/F1SC46" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SC46", "url": "https://www.uniprot.org/uniprotkb/F1SC46" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 179, "end_pos": 181, "annotation": "n_glycosylation_sequon" }, { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" }, { "start_pos": 279, "end_pos": 281, "annotation": "n_glycosylation_sequon" }, { "start_pos": 331, "end_pos": 333, "annotation": "n_glycosylation_sequon" }, { "start_pos": 347, "end_pos": 349, "annotation": "n_glycosylation_sequon" }, { "start_pos": 482, "end_pos": 484, "annotation": "n_glycosylation_sequon" }, { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SC46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC46" }, { "id": "PF07773", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07773" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tectonic-1-3", "eco_id": "ECO_0000259", "start_pos": 207, "end_pos": 366, "start_aa": "Phe", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SC46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC46" }, { "id": "PF25752", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25752" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tectonic-1-3 N-terminal", "eco_id": "ECO_0000259", "start_pos": 68, "end_pos": 183, "start_aa": "Pro", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 72 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 165, "end_pos": 167 }, { "start_pos": 179, "end_pos": 181 }, { "start_pos": 261, "end_pos": 263 }, { "start_pos": 279, "end_pos": 281 }, { "start_pos": 331, "end_pos": 333 }, { "start_pos": 347, "end_pos": 349 }, { "start_pos": 482, "end_pos": 484 }, { "start_pos": 78, "end_pos": 80 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SAR6-1", "uniprot_ac": "F1SAR6", "uniprot_id": "F1SAR6_PIG", "mass": { "chemical_mass": 115529.0, "monoisotopic_mass": 115529.0 }, "refseq": {}, "gene_names": [ { "name": "SYNE3", "type": "recommended", "evidence": [ { "id": "F1SAR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAR6" } ] } ], "protein_names": [ { "name": "Spectrin repeat containing nuclear envelope family member 3", "type": "synonym", "evidence": [ { "id": "F1SAR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAR6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAR6", "url": "https://www.uniprot.org/uniprotkb/F1SAR6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SYNE3", "url": "https://www.uniprot.org/uniprotkb/F1SAR6", "locus": { "chromosome": "7", "start_pos": 116665435, "end_pos": 116770302, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002495", "url": "https://www.ensembl.org/id/ENSSSCG00000002495" } ] } } ], "crossref": [ { "id": "F1SAR6", "url": "https://alphafold.ebi.ac.uk/entry/F1SAR6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002495", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002495", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR012315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052403", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052403", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057932", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057932", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057933", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057933", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47535", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47535", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47535:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47535:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10541", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10541", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25803", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25803", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25804", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25804", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZLB2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLB2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZS05", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZS05-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS05-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZUL0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZUL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUL0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABU4", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABU4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AX73", "url": "https://www.uniprot.org/uniprotkb/A0A287AX73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AX73-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX73-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGN4", "url": "https://www.uniprot.org/uniprotkb/A0A287BGN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGN4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQH8", "url": "https://www.uniprot.org/uniprotkb/A0A287BQH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQH8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQS9", "url": "https://www.uniprot.org/uniprotkb/A0A287BQS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQS9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD83", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD83-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD83-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAR6", "url": "https://www.uniprot.org/uniprotkb/F1SAR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAR6-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHPRAVESDSALEAVWSSEMGMPALESSRTRFQPQTPAGAMTQQPQEGFDRSVEDAREWMKAVQERLQVNDNTQGPREALEARLRETEKICQLEPEGRVKVDVVLRAAEALLARCHEDQKPQILARLRDVKAQWEETVTYMTHCHSRIEWVWLHWSEYLLARDEFYRWFQKMTVALEPPVELQLGLKEKQWQLSHAQVLLYNVDNQAVLLDRLLEEAASLLNRIGDPSVDEDAQKRMKAEYDAVKAKAQDRVHLLERVTQEHAHFQASVDEFQLWLKAVVERVSSCVGHKSQLSTKDRLSALQVTPRKPLPEGSESLKRLEEQAVGVIQNTSPLGAEKITKELEEMRNVLEKLRVLQEEEEGRLQGLLKSNGACEQQRRQLEAELAEFRKDLQRLAEEDLEPETKASTEDELVARWRLYSVTRAALAAEEPRVDRLQAQLKKLIAFPQDPQPLSDSVVATIQEFQRLKAKTSRLCNAADVQLWQRLQRPLQDLQLWRALAQRLLDVTASLPDPPSIHTFLPQIEAALAESSRLKEQLTILQLKKDLLGGVFGQERAAVLLEQVATSVRDRDLLHNRLLQRKSKLQSSLAQHKDFGAAFEPLQKKLLDLRIRIQAENGLQRDLPGKQAQLSRLQGLQEEGLDLGAQVEATRSLIQDNPNHQHKMDQLSADYQALHRSLEDLVDRCQQSVREHCTFSHQLLELRHWLAVLTQKLEAHRGYLGPWDAQSREAEAERLLAELPEKEAQLPLIEALGRLVMEKSSPEGAAMVQEELAELAESWGALRLLEESLQSLVRNQQLQRTEVDSGKKMIFTNNIPKTGFLITPTDLISRHHRRARPLLREGEGSHEDFSQLLRNFELWLQVENSKLVRIIAMKAATAEDLRTRETKLQELEARVPEGQHLFENLLRLGPARGSLDELEDLRYRWMLYKSKLKDSSLLLTGSSPGEPTGFQKVRRLPSVCCVALPLQLLLLLLLLLLFLLPVGEEHRSCSLANNFARSFRFMLRYNGPPPT", "length": 1010, "header": "tr|F1SAR6-1|F1SAR6_PIG Isoform 1 of Spectrin repeat containing nuclear envelope family member 3 OS=Sus scrofa OX=9823 GN=SYNE3 PE=1 SV=4 CANONICAL=F1SAR6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLB2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR6/entry#A0A286ZLB2-1", "sequence": { "sequence": "MTQQPQEGFDRSVEDAREWMKAVQERLQVNDNTQGPREALEARLRETEKICQLEPEGRVKVDVVLRAAEALLARCHEDQKPQILARLRDVKAQWEETVTYMTHCHSRIEWVWLHWSEYLLARDEFYRWFQKMTVALEPPVELQLGLKEKQWQLSHAQVLLYNVDNQAVLLDRLLEEAASLLNRIGDPSVDEDAQKRMKAEYDAVKAKAQDRVHLLERVTQEHAHFQASVDEFQLWLKAVVERVSSCVGHKSQLSTKDRLSALQDIASDFPRKESLKRLEEQAVGVIQNTSPLGAEKITKELEEMRNVLEKLRVLQEEEEGRLQGLLKSNGACEQQRRQLEAELAEFRKDLQRLAEEDLEPETKASTEDELVARWRLYSVTRAALAAEEPRVDRLQAQLKKLIAFPQDPQPLSDSVVATIQEFQRLKAKTSRLCNAADVQLWQRLQRPLQDLQLWRALAQRLLDVTASLPDPPSIHTFLPQIEAALAESSRLKEQLTILQLKKDLLGGVFGQERAAVLLEQVATSVRDRDLLHNRLLQRKSKLQSSLAQHKDFGAAFEPLQKKLLDLRIRIQAENGLQRDLPGKQAQLSRLQVRGLWGLSHLCSGAPRSCPRPLR", "length": 614, "header": "tr|A0A286ZLB2-1|F1SAR6_PIG Computationally mapped isoform of Spectrin repeat containing nuclear envelope family member 3 OS=Sus scrofa OX=9823 GN=SYNE3 PE=1 SV=2 CANONICAL=F1SAR6-1" }, "locus": { "chromosome": "7", "start_pos": 116730027, "end_pos": 116697299, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042919.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042919.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032343.3", "url": "https://www.ensembl.org/id/ENSSSCP00000032343.3" } ] } }, { "isoform_ac": "A0A286ZS05-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR6/entry#A0A286ZS05-1", "sequence": { "sequence": "MTQQPQEGFDRSVEDAREWMKAVQERLQVNDNTQGPREALEARLRETEKICQLEPEGRVKVDVVLRAAEALLARCHEDQKPQILARLRDVKAQWEETVTYMTHCHSRIEWVWLHWSEYLLARDEFYRWFQKMTVALEPPVELQLGLKEKQWQLSHAQVLLYNVDNQAVLLDRLLEEAASLLNRIGDPSVDEDAQKRMKAEYDAVKAKAQDRVHLLERVTQEHAHFQASVDEFQLWLKAVVERVSSCVGHKSQLSTKDRLSALQDIASDFPRKESLKRLEEQAVGVIQNTSPLGAEKITKELEEMRNVLEKLRVLQEEEEGRLQGLLKSNGACEQQRRQLEAELAEFRKDLQRLAEEDLEPETKASTEDELVARWRLYSVTRAALAAEEPRVDRLQAQLKKLIAFPQDPQPLSDSVVATIQEFQRLKAKTSRLCNAADVQLWQRLQRPLQDLQLWRALAQRLLDVTASLPDPPSIHTFLPQIEAALAESSRLKEQLTILQLKKDLLGGVFGQERAAVLLEQVATSVRDRDLLHNRLLQRKSKLQSSLAQHKDFGAAFEPLQKKLLDLRIRIQAENGLQRDLPGKQAQLSRLQGLQEEGLDLGAQVEATRSLIQDNPNHQHKMDQLSADYQALHRSLEDLVDRCQQSVREHCTFSHQLLELRHWLAVLTQKLEAHRGYLGPWDAQSREAEAERLLAELPEKEAQLPLIEALGRLVMEKSSPEGAAMVQEELAELAESWGALRLLEESLQSLVRNQQLQRTEVDSGKKMIFTNNIPKTGFLITPTDLISRHHRRARPLLREGEGSHEDFSQLLRNFELWLQVENSKLVRIIAMKAATAEDLRTRETKLQELEARVPEGQHLFENLLRLGPARGSLDELEDLRYRWMLYKSKLKDSSLLLTGSSPGEPTGFQKTPRGRGLGAFCRKVCCVALPLQLLLLLLLLLLFLLPVGEEHRSCSLANNFARSFRFMLRYNGPPPT", "length": 975, "header": "tr|A0A286ZS05-1|F1SAR6_PIG Computationally mapped isoform of Spectrin repeat containing nuclear envelope family member 3 OS=Sus scrofa OX=9823 GN=SYNE3 PE=1 SV=2 CANONICAL=F1SAR6-1" }, "locus": { "chromosome": "7", "start_pos": 116730027, "end_pos": 116672606, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064896.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064896.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034428.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034428.2" } ] } }, { "isoform_ac": "A0A286ZUL0-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR6/entry#A0A286ZUL0-1", "sequence": { "sequence": "MRNVLEKLRVLQEEEEGRLQGLLKSNGACEQQRRQLEAELAEFRKDLQRLAEEDLEPETKASTEDELVARWRLYSVTRAALAAEEPRVDRLQAQLKKLIAFPQDPQPLSDSVVATIQEFQRLKAKTSRLCNAADVQLWQRLQRPLQDLQLWRALAQRLLDVTASLPDPPSIHTFLPQIEAALAESSRLKEQLTILQLKKDLLGGVFGQERAAVLLEQVATSVRDRDLLHNRLLQRKSKLQSSLAQHKDFGAAFEPLQKKLLDLRIRIQAENGLQRDLPGKQAQLSRLQDLVDRCQQSVREHCTFSHQLLELRHWLAVLTQKLEAHRGYLGPWDAQSREAEAERLLAELPEKEAQLPLIEALGRLVMEKSSPEGAAMVQEELAELAESWGALRLLEESLQSLVRNQQLQRTEVDSGKKMIFTNNIPKTGFLITPTDLISRHHRRARPLLREGEGSHEDFSQLLRNFELWLQVENSKLVRIIAMKAATAEDLRTRETKLQELEARVPEGQHLFENLLRLGPARGSLDELEDLRYRWMLYKSKLKDSSLLLTGSSPGEPTGFQKTPRGRGLGAFCRKVCCVALPLQLLLLLLLLLLFLLPVGEEHRSCSLANNFARSFRFMLRYNGPPPT", "length": 627, "header": "tr|A0A286ZUL0-1|F1SAR6_PIG Computationally mapped isoform of Spectrin repeat containing nuclear envelope family member 3 OS=Sus scrofa OX=9823 GN=SYNE3 PE=1 SV=1 CANONICAL=F1SAR6-1" }, "locus": { "chromosome": "7", "start_pos": 116709791, "end_pos": 116672606, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059431.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059431.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035176.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035176.2" } ] } }, { "isoform_ac": "A0A287ABU4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR6/entry#A0A287ABU4-1", "sequence": { "sequence": "MRNVLEKLRVLQEEEEGRLQGLLKSNGACEQQRRQLEAELAEFRKDLQRLAEEDLEPETKASTEDELVARWRLYSVTRAALAAEEPRVDRLQAQLKKLIAFPQDPQPLSDSVVATIQEFQRLKAKTSRLCNAADVQLWQRLQRPLQDLQLWRALAQRLLDVTASLPDPPSIHTFLPQIEAALAESSRLKEQLTILQLKKDLLGGVFGQERAAVLLEQVATSVRDRDLLHNRLLQRKSKLQSSLAQHKDFGAAFEPLQKKLLDLRIRIQAENGLQRDLPGKQAQLSRLQGLQEEGLDLGAQVEATRSLIQDNPNHQHKMDQLSADYQALHRSLEDLVDRCQQSVREHCTFSHQLLELRHWLAVLTQKLEAHRGYLGPWDAQSREAEAERLLAELPEKEAQLPLIEALGRLVMEKSSPEGAAMVQEELAELAESWGALRLLEESLQSLVRNQQLQRTEVDSGKKMIFTNNIPKTGFLITPTDLISRHHRRARPLLREGEGSHEDFSQLLRNFELWLQVENSKLVRIIAMKAATAEDLRTRETKLQELEARVPEGQHLFENLLRLGPARGSLDELEDLRYRWMLYKSKLKDSSLLLTGSSPGEPTGFQKQRSS", "length": 610, "header": "tr|A0A287ABU4-1|F1SAR6_PIG Computationally mapped isoform of Spectrin repeat containing nuclear envelope family member 3 OS=Sus scrofa OX=9823 GN=SYNE3 PE=1 SV=1 CANONICAL=F1SAR6-1" }, "locus": { "chromosome": "7", "start_pos": 116709791, "end_pos": 116674892, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064433.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064433.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041349.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041349.2" } ] } }, { "isoform_ac": "A0A287AX73-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR6/entry#A0A287AX73-1", "sequence": { "sequence": "MRNVLEKLRVLQEEEEGRLQGLLKSNGACEQQRRQLEAELAEFRKDLQRLAEEDLEPETKASTEDELVARWRLYSVTRAALAAEEPRVDRLQAQLKKLIAFPQDPQPLSDSVVATIQEFQRLKAKTSRLCNAADVQLWQRLQRPLQDLQLWRALAQRLLDVTASLPDPPSIHTFLPQIEAALAESSRLKEQLTILQLKKDLLGGVFGQERAAVLLEQVATSVRDRDLLHNRLLQRKSKLQSSLAQHKDFGAAFEPLQKKLLDLRIRIQAENGLQRDLPGKQAQLSRLQGLQEEGLDLGAQVEATRSLIQDNPNHQHKMDQLSADYQALHRSLEDLVDRCQQSVREHCTFSHQLLELRHWLAVLTQKLEAHRGYLGPWDAQSREAEAERLLAELPEKEAQLPLIEALGRLVMEKSSPEGAAMVQEELAELAESWGALRLLEESLQSLVRNQQLQRTEVDSGKKMIFTNNIPKTGFLITPTDLISRHHRRARPLLREGEGSHEDFSQLLRNFELWLQVENSKLVRIIAMKAATAEDLRTRETKLQELEARVPEGQHLFENLLRLGPARGSLDELEDLRYRWMLYKSKLKDSSLLLTGSSPGEPTGFQKTPRGRGLGAFCRKVCCVALPLQLLAGQQLRPLLQVHAPLQRPPTHLAPPDHAGHILLQTSISPGAPPEGAGETGNRASGARGAASM", "length": 692, "header": "tr|A0A287AX73-1|F1SAR6_PIG Computationally mapped isoform of Spectrin repeat containing nuclear envelope family member 3 OS=Sus scrofa OX=9823 GN=SYNE3 PE=1 SV=2 CANONICAL=F1SAR6-1" }, "locus": { "chromosome": "7", "start_pos": 116709791, "end_pos": 116672484, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055239.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055239.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048543.3", "url": "https://www.ensembl.org/id/ENSSSCP00000048543.3" } ] } }, { "isoform_ac": "A0A287BGN4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR6/entry#A0A287BGN4-1", "sequence": { "sequence": "MRNVLEKLRVLQEEEEGRLQGLLKSNGACEQQRRQLEAELAEFRKDLQRLAEEDLEPETKASTEDELVARWRLYSVTRAALAAEEPRVDRLQAQLKKLIAFPQDPQPLSDSVVATIQEFQRLKAKTSRLCNAADVQLWQRLQRPLQDLQLWRALAQRLLDVTASLPDPPSIHTFLPQIEAALAESSRLKEQLTILQLKKDLLGGVFGQERAAVLLEQVATSVRDRDLLHNRLLQRKSKLQSSLAQHKDFGAAFEPLQKKLLDLRIRIQAENGLQRDLPGKQAQLSRLQGLQEEGLDLGAQVEATRSLIQDNPNHQHKMDQLSADYQALHRSLEDLVDRCQQSVREHCTFSHQLLELRHWLAVLTQKLEAHRGYLGPWDAQSREAEAERLLAELPEKEAQLPLIEALGRLVMEKSSPEGAAMVQEELAELAESWGALRLLEESLQSLVRNQQLQRTEVDSGKKMIFTNNIPKTGFLITPTDLISRHHRRARPLLREGEGSHEDFSQLLRNFELWLQVENSKLVRIIAMKAATAEDLRTRETKLQELEARVPEGQHLFENLLRLGPARGSLDELEDLRYRWMLYKSKLKDSSLLLTGSSPGEPTGFQKMLCVDHSLCARSLPNRG", "length": 623, "header": "tr|A0A287BGN4-1|F1SAR6_PIG Computationally mapped isoform of Spectrin repeat containing nuclear envelope family member 3 OS=Sus scrofa OX=9823 GN=SYNE3 PE=1 SV=1 CANONICAL=F1SAR6-1" }, "locus": { "chromosome": "7", "start_pos": 116709791, "end_pos": 116682977, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062424.2", "url": "https://www.ensembl.org/id/ENSSSCT00000062424.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055695.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055695.2" } ] } }, { "isoform_ac": "A0A287BQH8-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR6/entry#A0A287BQH8-1", "sequence": { "sequence": "MRNVLEKLRVLQEEEEGRLQGLLKSNGACEQQRRQLEAELAEFRKDLQRLAEEDLEPETKASTEDELVARWRLYSVTRAALAAEEPRVDRLQAQLKKLIAFPQDPQPLSDSVVATIQEFQRLKAKTSRLCNAADVQLWQRLQRPLQDLQLWRALAQRLLDVTASLPDPPSIHTFLPQIEAALAESSRLKEQLTILQLKKDLLGGVFGQERAAVLLEQVATSVRDRDLLHNRLLQRKSKLQSSLAQHKDFGAAFEPLQKKLLDLRIRIQAENGLQRDLPGKQAQLSRLQGLQEEGLDLGAQVEATRSLIQDNPNHQHKMDQLSADYQALHRSLEDLVDRCQQSVREHCTFSHQLLELRHWLAVLTQKLEAHRGYLGPWDAQSREAEAERLLAELPEKEAQLPLIEALGRLVMEKSSPEGAAMVQEELAELAESWGALRLLEESLQSLVRNQQLQRTEVDSGKKMIFTNNIPKTGFLITPTDLISRHHRRARPLLREGEGSHEDFSQLLRNFELWLQVENSKLVRIIAMKAATAEDLRTRETKLQTGSSPGEPTGFQKTPRGRGLGAFCRKVCCVALPLQLLLLLLLLLLFLLPVGEEHRSCSLANNFARSFRFMLRYNGPPPT", "length": 622, "header": "tr|A0A287BQH8-1|F1SAR6_PIG Computationally mapped isoform of Spectrin repeat containing nuclear envelope family member 3 OS=Sus scrofa OX=9823 GN=SYNE3 PE=1 SV=2 CANONICAL=F1SAR6-1" }, "locus": { "chromosome": "7", "start_pos": 116709791, "end_pos": 116672606, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051758.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051758.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058887.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058887.3" } ] } }, { "isoform_ac": "A0A287BQS9-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR6/entry#A0A287BQS9-1", "sequence": { "sequence": "MRNVLEKLRVLQEEEEGRLQGLLKSNGACEQQRRQLEAELAEFRKDLQRLAEEDLEPETKASTEDELVARWRLYSVTRAALAAEEPRVDRLQAQLKKLIAFPQDPQPLSDSVVATIQEFQRLKAKTSRLCNAADVQLWQRLQRPLQDLQLWRALAQRLLDVTASLPDPPSIHTFLPQIEAALAESSRLKEQLTILQLKKDLLGGVFGQERAAVLLEQVATSVRDRDLLHNRLLQRKSKLQSSLAQHKDFGAAFEPLQKKLLDLRIRIQAENGLQRDLPGKQAQLSRLQGLQEEGLDLGAQVEATRSLIQDNPNHQHKMDQLSADYQALHRSLEDLVDRCQQSVREHCTFSHQLLELRHWLAVLTQKLEAHRGYLGPWDAQSREAEAERLLAELPEKEAQLPLIEALGRLVMEKSSPEGAAMVQEELAELAESWGALRLLEESLQSLVRNQQLQRTEVDSGKKMIFTNNIPKTGFLITPTDLISRHHRRARPLLREGEGSHEDFSQLLRNFELWLQVENSKLVRIIAMKAATAEDLRTRETKLQELEARVPEGQHLFENLLRLGPARGSLDELEDLRYRWMLYKSKLKDSSLLLTGSSPGEPTGFQKLPTHLPAQCHRIRLPAAFRRMKYHCFSSCHWAVKFLPWGIEVVPRQTAV", "length": 655, "header": "tr|A0A287BQS9-1|F1SAR6_PIG Computationally mapped isoform of Spectrin repeat containing nuclear envelope family member 3 OS=Sus scrofa OX=9823 GN=SYNE3 PE=1 SV=2 CANONICAL=F1SAR6-1" }, "locus": { "chromosome": "7", "start_pos": 116709791, "end_pos": 116680108, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050703.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050703.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058472.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058472.2" } ] } }, { "isoform_ac": "A0A8W4FD83-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR6/entry#A0A8W4FD83-1", "sequence": { "sequence": "MRNVLEKLRVLQEEEEGRLQGLLKSNGACEQQRRQLEAELAEFRKDLQRLAEEDLEPETKASTEDELVARWRLYSVTRAALAAEEPRVDRLQAQLKKLIAFPQDPQPLSDSVVATIQEFQRLKAKTSRLCNAADVQLWQRLQRPLQDLQLWRALAQRLLDVTASLPDPPSIHTFLPQIEAALAESSRLKEQLTILQLKKDLLGGVFGQERAAVLLEQVATSVRDRDLLHNRLLQRKSKLQSSLAQHKDFGAAFEPLQKKLLDLRIRIQAENGLQRDLPGKQAQLSRLQGLQEEGLDLGAQVEATRSLIQDNPNHQHKMDQLSADYQALHRSLEDLVDRCQQSVREHCTFSHQLLELRHWLAVLTQKLEAHRGYLGPWDAQSREAEAERLLAELPEKEAQLPLIEALGRLVMEKSSPEGAAMVQEELAELAESWGALRLLEESLQSLVRNQQLQRTEVDSGKKMIFTNNIPKTGFLITPTDLISRHHRRARPLLREGEGSHEDFSQLLRNFELWLQVENSKLVRIIAMKAATAEDLRTRETKLQEPAELHPCKYCICGLQKNVTFIQYPLSLFIPNVYPV", "length": 579, "header": "tr|A0A8W4FD83-1|F1SAR6_PIG Computationally mapped isoform of Spectrin repeat containing nuclear envelope family member 3 OS=Sus scrofa OX=9823 GN=SYNE3 PE=1 SV=1 CANONICAL=F1SAR6-1" }, "locus": { "chromosome": "7", "start_pos": 116709791, "end_pos": 116672399, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103656.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103656.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076814.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076814.1" } ] } }, { "isoform_ac": "F1SAR6-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR6/entry#F1SAR6-1", "sequence": { "sequence": "MHPRAVESDSALEAVWSSEMGMPALESSRTRFQPQTPAGAMTQQPQEGFDRSVEDAREWMKAVQERLQVNDNTQGPREALEARLRETEKICQLEPEGRVKVDVVLRAAEALLARCHEDQKPQILARLRDVKAQWEETVTYMTHCHSRIEWVWLHWSEYLLARDEFYRWFQKMTVALEPPVELQLGLKEKQWQLSHAQVLLYNVDNQAVLLDRLLEEAASLLNRIGDPSVDEDAQKRMKAEYDAVKAKAQDRVHLLERVTQEHAHFQASVDEFQLWLKAVVERVSSCVGHKSQLSTKDRLSALQVTPRKPLPEGSESLKRLEEQAVGVIQNTSPLGAEKITKELEEMRNVLEKLRVLQEEEEGRLQGLLKSNGACEQQRRQLEAELAEFRKDLQRLAEEDLEPETKASTEDELVARWRLYSVTRAALAAEEPRVDRLQAQLKKLIAFPQDPQPLSDSVVATIQEFQRLKAKTSRLCNAADVQLWQRLQRPLQDLQLWRALAQRLLDVTASLPDPPSIHTFLPQIEAALAESSRLKEQLTILQLKKDLLGGVFGQERAAVLLEQVATSVRDRDLLHNRLLQRKSKLQSSLAQHKDFGAAFEPLQKKLLDLRIRIQAENGLQRDLPGKQAQLSRLQGLQEEGLDLGAQVEATRSLIQDNPNHQHKMDQLSADYQALHRSLEDLVDRCQQSVREHCTFSHQLLELRHWLAVLTQKLEAHRGYLGPWDAQSREAEAERLLAELPEKEAQLPLIEALGRLVMEKSSPEGAAMVQEELAELAESWGALRLLEESLQSLVRNQQLQRTEVDSGKKMIFTNNIPKTGFLITPTDLISRHHRRARPLLREGEGSHEDFSQLLRNFELWLQVENSKLVRIIAMKAATAEDLRTRETKLQELEARVPEGQHLFENLLRLGPARGSLDELEDLRYRWMLYKSKLKDSSLLLTGSSPGEPTGFQKVRRLPSVCCVALPLQLLLLLLLLLLFLLPVGEEHRSCSLANNFARSFRFMLRYNGPPPT", "length": 1010, "header": "tr|F1SAR6-1|F1SAR6_PIG Isoform 1 of Spectrin repeat containing nuclear envelope family member 3 OS=Sus scrofa OX=9823 GN=SYNE3 PE=1 SV=4 CANONICAL=F1SAR6-1" }, "locus": { "chromosome": "7", "start_pos": 116739692, "end_pos": 116672606, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002773.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002773.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002702.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002702.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FD83", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD83" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nuclear outer membrane", "id": "GO:0005640", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005640", "evidence": [ { "database": "UniProtKB", "id": "F1SAR6", "url": "https://www.uniprot.org/uniprotkb/F1SAR6" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SAR6", "url": "https://www.uniprot.org/uniprotkb/F1SAR6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SAR6", "url": "https://www.uniprot.org/uniprotkb/F1SAR6" } ], "pmid": "" }, { "name": "meiotic nuclear membrane microtubule tethering complex", "id": "GO:0034993", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034993", "evidence": [ { "database": "UniProtKB", "id": "F1SAR6", "url": "https://www.uniprot.org/uniprotkb/F1SAR6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "F1SAR6", "url": "https://www.uniprot.org/uniprotkb/F1SAR6" } ], "pmid": "" }, { "name": "cytoskeleton-nuclear membrane anchor activity", "id": "GO:0140444", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140444", "evidence": [ { "database": "UniProtKB", "id": "F1SAR6", "url": "https://www.uniprot.org/uniprotkb/F1SAR6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cytoskeleton organization", "id": "GO:0007010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007010", "evidence": [ { "database": "UniProtKB", "id": "F1SAR6", "url": "https://www.uniprot.org/uniprotkb/F1SAR6" } ], "pmid": "" }, { "name": "regulation of cell shape", "id": "GO:0008360", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008360", "evidence": [ { "database": "UniProtKB", "id": "F1SAR6", "url": "https://www.uniprot.org/uniprotkb/F1SAR6" } ], "pmid": "" }, { "name": "establishment of protein localization to membrane", "id": "GO:0090150", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090150", "evidence": [ { "database": "UniProtKB", "id": "F1SAR6", "url": "https://www.uniprot.org/uniprotkb/F1SAR6" } ], "pmid": "" }, { "name": "nuclear migration", "id": "GO:0007097", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007097", "evidence": [ { "database": "UniProtKB", "id": "F1SAR6", "url": "https://www.uniprot.org/uniprotkb/F1SAR6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 330, "end_pos": 332, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAR6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1010, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAR6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAR6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAR6" }, { "id": "PS51049", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51049" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KASH", "eco_id": "ECO_0000259", "start_pos": 952, "end_pos": 1010, "start_aa": "Val", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 330, "end_pos": 332 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SD97-1", "uniprot_ac": "F1SD97", "uniprot_id": "F1SD97_PIG", "mass": { "chemical_mass": 57541.0, "monoisotopic_mass": 57541.0 }, "refseq": { "ac": "XP_003123385", "name": "phenylalanine--tRNA ligase alpha subunit isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123385" }, "gene_names": [ { "name": "FARSA", "type": "recommended", "evidence": [ { "id": "F1SD97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD97" } ] }, { "name": "FARSA", "type": "synonym", "evidence": [ { "id": "XP_003123385", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123385" } ] } ], "protein_names": [ { "name": "Phenylalanine--tRNA ligase alpha subunit", "type": "recommended", "evidence": [ { "id": "F1SD97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD97/entry#names_and_taxonomy" } ] }, { "name": "6.1.1.20", "type": "synonym", "evidence": [ { "id": "F1SD97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD97/entry#names_and_taxonomy" } ] }, { "name": "Phenylalanyl-tRNA synthetase alpha subunit", "type": "synonym", "evidence": [ { "id": "F1SD97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD97/entry#names_and_taxonomy" } ] }, { "name": "phenylalanine--tRNA ligase alpha subunit isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003123385", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123385" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SD97", "url": "https://www.uniprot.org/uniprotkb/F1SD97" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FARSA", "url": "https://www.uniprot.org/uniprotkb/F1SD97", "locus": { "chromosome": "2", "start_pos": 66118191, "end_pos": 66105429, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013745", "url": "https://www.ensembl.org/id/ENSSSCG00000013745" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013745", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013745", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00496", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00496", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524304", "url": "https://www.ncbi.nlm.nih.gov/gene/100524304", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002319", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002319", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004529", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004529", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040586", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040586", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040724", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040724", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045864", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045864", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524304", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524304", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QIEGWVM", "url": "https://omabrowser.org/oma/group/QIEGWVM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SD97", "url": "https://www.orthodb.org/?gene=F1SD97", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11538", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11538", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11538:SF40", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11538:SF40", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01409", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01409", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18552", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18552", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18553", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18553", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18554", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18554", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003123385", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123385", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BRE0", "url": "https://www.uniprot.org/uniprotkb/A0A287BRE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRE0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQL7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQL7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RKP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RKP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKP2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RNP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RNP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RNP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RNP2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SD97", "url": "https://www.uniprot.org/uniprotkb/F1SD97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SD97-1", "url": "https://www.uniprot.org/uniprotkb/F1SD97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKRWELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLEMGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPLCRLDTEQGPPPTQEAA", "length": 508, "header": "tr|F1SD97-1|F1SD97_PIG Isoform 1 of Phenylalanine--tRNA ligase alpha subunit OS=Sus scrofa OX=9823 GN=FARSA PE=1 SV=3 CANONICAL=F1SD97-1" }, "isoforms": [ { "isoform_ac": "A0A287BRE0-1", "url": "https://www.uniprot.org/uniprotkb/F1SD97/entry#A0A287BRE0-1", "sequence": { "sequence": "MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKRWELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLEMGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPLCRLDTEQGPPPTQEAA", "length": 475, "header": "tr|A0A287BRE0-1|F1SD97_PIG Computationally mapped isoform of Phenylalanine--tRNA ligase alpha subunit OS=Sus scrofa OX=9823 GN=FARSA PE=1 SV=2 CANONICAL=F1SD97-1" }, "locus": { "chromosome": "2", "start_pos": 66114065, "end_pos": 66105443, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046506.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046506.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059011.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059011.2" } ] } }, { "isoform_ac": "A0A5G2QQL7-1", "url": "https://www.uniprot.org/uniprotkb/F1SD97/entry#A0A5G2QQL7-1", "sequence": { "sequence": "MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKRWELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLEMGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPLCRLDTEQGPPPTQEAA", "length": 477, "header": "tr|A0A5G2QQL7-1|F1SD97_PIG Computationally mapped isoform of Phenylalanine--tRNA ligase alpha subunit OS=Sus scrofa OX=9823 GN=FARSA PE=1 SV=1 CANONICAL=F1SD97-1" }, "locus": { "chromosome": "2", "start_pos": 66114065, "end_pos": 66105443, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066869.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066869.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060573.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060573.1" } ] } }, { "isoform_ac": "A0A5G2RKP2-1", "url": "https://www.uniprot.org/uniprotkb/F1SD97/entry#A0A5G2RKP2-1", "sequence": { "sequence": "MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKRWELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLEMGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPIHSFIHLTNP", "length": 474, "header": "tr|A0A5G2RKP2-1|F1SD97_PIG Computationally mapped isoform of Phenylalanine--tRNA ligase alpha subunit OS=Sus scrofa OX=9823 GN=FARSA PE=1 SV=1 CANONICAL=F1SD97-1" }, "locus": { "chromosome": "2", "start_pos": 66112931, "end_pos": 66105443, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087819.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087819.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072722.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072722.1" } ] } }, { "isoform_ac": "A0A5G2RNP2-1", "url": "https://www.uniprot.org/uniprotkb/F1SD97/entry#A0A5G2RNP2-1", "sequence": { "sequence": "MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKRWELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLEMGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPLCRLDTEQGPPPTQEAA", "length": 482, "header": "tr|A0A5G2RNP2-1|F1SD97_PIG Computationally mapped isoform of Phenylalanine--tRNA ligase alpha subunit OS=Sus scrofa OX=9823 GN=FARSA PE=1 SV=1 CANONICAL=F1SD97-1" }, "locus": { "chromosome": "2", "start_pos": 66114065, "end_pos": 66105443, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082207.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082207.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074536.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074536.1" } ] } }, { "isoform_ac": "F1SD97-1", "url": "https://www.uniprot.org/uniprotkb/F1SD97/entry#F1SD97-1", "sequence": { "sequence": "MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKRWELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLEMGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPLCRLDTEQGPPPTQEAA", "length": 508, "header": "tr|F1SD97-1|F1SD97_PIG Isoform 1 of Phenylalanine--tRNA ligase alpha subunit OS=Sus scrofa OX=9823 GN=FARSA PE=1 SV=3 CANONICAL=F1SD97-1" }, "locus": { "chromosome": "2", "start_pos": 66114065, "end_pos": 66105443, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015019.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015019.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014614.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014614.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 504, "start_aa": "Thr", "end_pos": 504, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr504", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RNP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RNP2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524304", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524304", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HCX7-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "Farsa", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MADNPVLELLLRRLEAADGGLDSAELATQLGVEHQVVVGAVKSLQALGEVIEAELRSTKCWELTTEGEEIAREGSHEARVFRSIPLEGLVQSELMRLPSGKVGFSKAMSNKWIRVDKNTADGPRVFQVVDSIEDEVQRRLQLVQAGQAEKLAEKERNELRKRKLLTEVTLKTYWVSKGKAFSTSISKQEAELSPEMISSGSWRDRPFKPYNFSARGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLKDPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYTWKLEEARKNVLRTHTTAASARTLYCLAQKKPFTPAKYFSIDRVFRNETLDATHLAEFHQIEGVIADRGLTLGYLLGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPVCRLDTEPRSPQTQEAA", "length": 508 }, "evidence": [ { "id": "F1SD97", "url": "https://omabrowser.org/oma/group/F1SD97/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P15625-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "FRS2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSDFQLEILKKLDELDEIKSTLATFPQHGSQDVLSALNSLKAHNKLEFSKVDTVTYDLTKEGAQILNEGSYEIKLVKLIQELGQLQIKDVMSKLGPQVGKVGQARAFKNGWIAKNASNELELSAKLQNTDLNELTDETQSILAQIKNNSHLDSIDAKILNDLKKRKLIAQGKITDFNVTKGPEFSTDLTKLETDLTSDMVSTNAYKDLKFKPYNFNSQGVQISSGALHPLNKVREEFRQIFFSMGFTEMPSNQYVETGFWNFDALYVPQQHPARDLQDTFYIKDPLTADLPDDKTYMDNIKAVHEQGRFGSIGYRYNWKPEECQKLVLRTHSTAISARMLHDLAKDPKPTRLFSIDRVFRNEAVDATHLAEFHQVEGVLADYNITLGDLIKFMEEFFERMGVTGLRFKPTYNPYTEPSMEIFSWHEGLQKWVEIGNSGMFRPEMLESMGLPKDLRVLGWGLSLERPTMIKYKVQNIRELLGHKVSLDFIETNPAARLDEDLYE", "length": 503 }, "evidence": [ { "id": "F1SD97", "url": "https://omabrowser.org/oma/group/F1SD97/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q1JPX3-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "farsa", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADTGLLEALLQRVEQLDGGVDSQDVSAALGVDHQLVVGAVKSLQALGEVISAEQKSSKHWELTGEGREIAEQGSHEARVFNAIPAEGLPQNQLMKMASGKVGFSKAMSNKWIRLDKAHEGGPRVFRTVESIEDTVRDKLQLVQNGQSAKLEEKEKNELKKRKLLAEVTVKSYWITKGNSFSTTITKQETELTPEMIASGNWKEKKFKPYNFEAMGVAPDCGHLHPLMKVRTQFRQIFLEMGFTEMPTNNFIESSFWNFDSLFQPQQHPARDQHDTFFISDPALAHEFPRDYLERVKKVHSEGGYGSQGYKYDWKIEEAQKNLLRTHTTAVSARMLYKLAQQEKFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADYGLTLGNLMGVLHQFFTKLGITKLRFKPAYNPYTEPSMEVFSYHEGLKKWVEVGNSGVFRPEMLLPMGLPEGVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPICRLDS", "length": 497 }, "evidence": [ { "id": "F1SD97", "url": "https://omabrowser.org/oma/group/F1SD97/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q505J8-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "Farsa", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADNPVLEQLLRRLEVADGGLDSAELATQLGVEHQAVVGAVKSLQALGEVIEAELRSTKCWELTTEGEEIAREGSHEARVFRSIPLEGLVQSELMQLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSIEDEVQRRLQQVQAGQAEKLAEKERNELRKRKLLTEVILKTYWVSKGKGFSTSVSKQEAELSPEMISSGSWRDRPFKPYNFSARGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYTWKLEEARKNLLRTHTTAASARALYRLAQKKPFTPAKYFSIDRVFRNETLDATHLAEFHQIEGVIADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPVCRLDIEPRSSKTQEAA", "length": 508 }, "evidence": [ { "id": "F1SD97", "url": "https://omabrowser.org/oma/group/F1SD97/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8C0C7-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "Farsa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADNPVLELLLRRLEVADGGLDSAELATQLGVEHQAVVGAVKSLQALGEVIEAELRSTKCWELTTEGEEIAREGSHEARVFRSIPLEGLVQSELMHLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSIEDEVQKRLQLVQAGQAEKLAEKERNELRKRKLLTEVILKTYWVSKGKAFSTSVSKQEAELSPEMISSGSWRDRPFKPYNFSARGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMGYVQRVKRTHSQGGYGSQGYKYTWKLEEARKNLLRTHTTAASARALYQLAQKKPFTPAKYFSIDRVFRNETLDATHLAEFHQIEGVIADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPVCRLDIEPRSSKTQEAA", "length": 508 }, "evidence": [ { "id": "F1SD97", "url": "https://omabrowser.org/oma/group/F1SD97/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9T034-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit, cytoplasmic", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAEEAILGFLQNNEQITDSGQFSAEFNIDHNELVNVIKSLHGFRYIDVQDIKKETWILTDEGKKYAAEGSPEVQLFLAVPEEGSISKDELQKKLAPAVFKIGCSQAGKNKWVEMGKQVSRKVKDVEDKVKGQLLQIQQGKEFDKESINSLKARKLIVPQIWKGYSVKKGPNYAPERKKVATDLTRENLQNWKELEFKEYNFKAKGAPVDAGHLHALLKVRKQFKDIFVQMGFEEMPTNNYVESSFWNFDALFQPQQHPARDSHDTFFLKVPSTTRTLPEDYVERVKRVHESGGYGSRGYNYDWKREEANKNLLRTHTTAVSSRMLYALAQKPFVPKKYFSIDRVFRNEAVDRTHLAEFHQIEGLICDRGLTLGDLIGVLEDFFSRLGMSKLRFKPAYNPYTEPSMEIFSYHEGLGKWVEIGNSGMFRPEMLLPMGLPEDVRVIAWGLSLERPTMILYGIDNIRDLFGHKVDLDLIKRNPICRIGI", "length": 485 }, "evidence": [ { "id": "F1SD97", "url": "https://omabrowser.org/oma/group/F1SD97/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9W3J5-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "alpha-PheRS", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MHPDLTERILQHLETTDKADTLDLAALFAEDHQKIVGSLKSIQAHGELVTAETVTHKSLGLTDEGRAVVENGSHEALVYDLVPPEGIAQAALMAAGGANAKVGFSKAMSHGWILVDKSVTPPLVRRKVDTITDVVRNQLQQVALGKGDQLPAKEVADFKKRKLLQETTTKSFVLARGPEFATTLTKLETDLTVEMLANGLWDQLKFKAYNFDALGAPPTRGHLHPLLKVRTEFRQIFLEMGFSEMPTNNYVESSFWNFDALYQPQQHPARDAHDTFFVNHPAKSHKFPQDYLERVKKVHSVGGYGSKGYGYDWKLEEAQKNLLRTHTTAVSARMLYKLANQEGGFKAAKYFSIDKVFRNETLDATHLAEFHQVEGVIADVGLTLGDLIGTLYEFFRKLGITQLEFKPAYNPYTEPSMEIFCYHPGLAKWIEVGNSGVFRPEMLLPMGLPENVNVIAWGLSLERPTMIKYGINNIRDLVGPKVDLKMVEEGPICRLDHA", "length": 498 }, "evidence": [ { "id": "F1SD97", "url": "https://omabrowser.org/oma/group/F1SD97/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y285-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "FARSA", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADGQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAREGSHEARVFRSIPPEGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPLCRLDAEPRPPPTQEAA", "length": 508 }, "evidence": [ { "id": "F1SD97", "url": "https://omabrowser.org/oma/group/F1SD97/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SD97", "url": "https://www.uniprot.org/uniprotkb/F1SD97" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SD97", "url": "https://www.uniprot.org/uniprotkb/F1SD97" } ], "pmid": "" }, { "name": "tRNA binding", "id": "GO:0000049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000049", "evidence": [ { "database": "UniProtKB", "id": "F1SD97", "url": "https://www.uniprot.org/uniprotkb/F1SD97" } ], "pmid": "" }, { "name": "phenylalanine-tRNA ligase activity", "id": "GO:0004826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004826", "evidence": [ { "database": "UniProtKB", "id": "F1SD97", "url": "https://www.uniprot.org/uniprotkb/F1SD97" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SD97", "url": "https://www.uniprot.org/uniprotkb/F1SD97" } ], "pmid": "" }, { "name": "phenylalanine-tRNA ligase complex", "id": "GO:0009328", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009328", "evidence": [ { "database": "UniProtKB", "id": "F1SD97", "url": "https://www.uniprot.org/uniprotkb/F1SD97" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "phenylalanyl-tRNA aminoacylation", "id": "GO:0006432", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006432", "evidence": [ { "database": "UniProtKB", "id": "F1SD97", "url": "https://www.uniprot.org/uniprotkb/F1SD97" } ], "pmid": "" }, { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "F1SD97", "url": "https://www.uniprot.org/uniprotkb/F1SD97" } ], "pmid": "" }, { "name": "tRNA aminoacylation", "id": "GO:0043039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043039", "evidence": [ { "database": "UniProtKB", "id": "F1SD97", "url": "https://www.uniprot.org/uniprotkb/F1SD97" } ], "pmid": "" }, { "name": "protein heterotetramerization", "id": "GO:0051290", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051290", "evidence": [ { "database": "UniProtKB", "id": "F1SD97", "url": "https://www.uniprot.org/uniprotkb/F1SD97" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 451, "end_pos": 453, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SD97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD97" }, { "id": "PS50862", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50862" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aminoacyl-transfer RNA synthetases class-II family profile", "eco_id": "ECO_0000259", "start_pos": 229, "end_pos": 502, "start_aa": "Lys", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 504 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 211, "end_pos": 213 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 451, "end_pos": 453 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": 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"evidence": [ { "id": "F1SDI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDI6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDI6", "url": "https://www.uniprot.org/uniprotkb/F1SDI6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "INPP5A", "url": "https://www.uniprot.org/uniprotkb/F1SDI6", "locus": { "chromosome": "14", "start_pos": 140895937, "end_pos": 140736734, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010765", "url": "https://www.ensembl.org/id/ENSSSCG00000010765" } ] } } ], "crossref": [ { "id": "F1SDI6", "url": "https://alphafold.ebi.ac.uk/entry/F1SDI6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010765", "url": 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22669", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22669", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1855183", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855183", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BRF7", "url": "https://www.uniprot.org/uniprotkb/A0A287BRF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRF7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDI6", "url": "https://www.uniprot.org/uniprotkb/F1SDI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDI6-1", "url": "https://www.uniprot.org/uniprotkb/F1SDI6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSGRRGRGLPSRPFRRTWPQCPASPQPVRPSGSPCRVPCVQGPAVPKRHGRLRPFFSDDPRLARPRPRCVVHTHRPHFLALHCQEFGGKNYEASMSHVDKFVKELLSSDAMKEYNRARVYLDENYKSQEHFTALGSFYFLHESLKSIYQFDFKGKKYKKVAGKEIYSDTLESTPMLEKEKFPQDYFPECKWSRKGFIRTRWCIADCAFDLVNIHLFHDASNLVAWETSPSVYSGIRHKALGYVLDRITDQRFERASYFVFGDFNFRLDSKAVVETLCTKATMQTVRAADTNEVVKLIFRESDNDRKVMLQLEKKLFDYFNQEVFRDNNGTALLEFDKELSVFKDRLYELDISFPPSYPYSEDSSQGRQYMNTRCPAWCDRVLMSLSAKELILRSESEEKAATYDHIGPSVCMGDHKPVFLAFRVAPGAGKRCPRREGTPGEPSLQLEEQTDGRTRTPQPIETRPSATC", "length": 469, "header": "tr|F1SDI6-1|F1SDI6_PIG Isoform 1 of inositol-polyphosphate 5-phosphatase OS=Sus scrofa OX=9823 GN=INPP5A PE=1 SV=4 CANONICAL=F1SDI6-1" }, "isoforms": [ { "isoform_ac": "A0A287BRF7-1", "url": "https://www.uniprot.org/uniprotkb/F1SDI6/entry#A0A287BRF7-1", "sequence": { "sequence": "MAGRPRGAAAPAQAAMAGKAAAPGTAVLLVTANVGSLFDDPENLQKNWLREFYQVVHTHRPHFLALHCQEFGGKNYEASMSHVDKFVKELLSSDAMKEYNRARVYLDENYKSQEHFTALGSFYFLHESLKSIYQFDFKGKKYKKVAGKEIYSDTLESTPMLEKEKFPQDYFPECKWSRKGFIRTRWCIADCAFDLVNIHLFHDASNLVAWETSPSVYSGIRHKALGYVLDRITDQRFERASYFVFGDFNFRLDSKAVVETLCTKATMQTVRAADTNEVVKLIFRESDNDRKVMLQLEKKLFDYFNQEVFRDNNGTALLEFDKELSVFKDRLYELDISFPPSYPYSEDSSQGRQYMNTRCPAWCDRVLMSLSAKELILRSESEEKAATYDHIGPSVCMGDHKPVFLAFRVAPGAGKPHAHVHKCCVVQ", "length": 427, "header": "tr|A0A287BRF7-1|F1SDI6_PIG Computationally mapped isoform of inositol-polyphosphate 5-phosphatase OS=Sus scrofa OX=9823 GN=INPP5A PE=1 SV=2 CANONICAL=F1SDI6-1" }, "locus": { "chromosome": "14", "start_pos": 140894419, "end_pos": 140736792, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053422.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053422.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059221.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059221.2" } ] } }, { "isoform_ac": "F1SDI6-1", "url": "https://www.uniprot.org/uniprotkb/F1SDI6/entry#F1SDI6-1", "sequence": { "sequence": "MDSGRRGRGLPSRPFRRTWPQCPASPQPVRPSGSPCRVPCVQGPAVPKRHGRLRPFFSDDPRLARPRPRCVVHTHRPHFLALHCQEFGGKNYEASMSHVDKFVKELLSSDAMKEYNRARVYLDENYKSQEHFTALGSFYFLHESLKSIYQFDFKGKKYKKVAGKEIYSDTLESTPMLEKEKFPQDYFPECKWSRKGFIRTRWCIADCAFDLVNIHLFHDASNLVAWETSPSVYSGIRHKALGYVLDRITDQRFERASYFVFGDFNFRLDSKAVVETLCTKATMQTVRAADTNEVVKLIFRESDNDRKVMLQLEKKLFDYFNQEVFRDNNGTALLEFDKELSVFKDRLYELDISFPPSYPYSEDSSQGRQYMNTRCPAWCDRVLMSLSAKELILRSESEEKAATYDHIGPSVCMGDHKPVFLAFRVAPGAGKRCPRREGTPGEPSLQLEEQTDGRTRTPQPIETRPSATC", "length": 469, "header": "tr|F1SDI6-1|F1SDI6_PIG Isoform 1 of inositol-polyphosphate 5-phosphatase OS=Sus scrofa OX=9823 GN=INPP5A PE=1 SV=4 CANONICAL=F1SDI6-1" }, "locus": { "chromosome": "14", "start_pos": 140894632, "end_pos": 140779142, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011777.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011777.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011475.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011475.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRF7", "url": "https://www.uniprot.org/uniprotkb/A0A287BRF7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1855183", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855183", "resource": "Reactome", "description": "Synthesis of IP2, IP, and Ins in the cytosol" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "phosphatidylinositol dephosphorylation", "id": "GO:0046856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046856", "evidence": [ { "database": "UniProtKB", "id": "F1SDI6", "url": "https://www.uniprot.org/uniprotkb/F1SDI6" } ], "pmid": "" }, { "name": "negative regulation of calcium-mediated signaling", "id": "GO:0050849", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050849", "evidence": [ { "database": "UniProtKB", "id": "F1SDI6", "url": "https://www.uniprot.org/uniprotkb/F1SDI6" } ], "pmid": "" }, { "name": "negative regulation of phospholipase C-activating G protein-coupled receptor signaling pathway", "id": "GO:1900737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900737", "evidence": [ { "database": "UniProtKB", "id": "F1SDI6", "url": "https://www.uniprot.org/uniprotkb/F1SDI6" } ], "pmid": "" }, { "name": "inositol phosphate metabolic process", "id": "GO:0043647", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043647", "evidence": [ { "database": "UniProtKB", "id": "F1SDI6", "url": "https://www.uniprot.org/uniprotkb/F1SDI6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "inositol-polyphosphate 5-phosphatase activity", "id": "GO:0004445", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004445", "evidence": [ { "database": "UniProtKB", "id": "F1SDI6", "url": "https://www.uniprot.org/uniprotkb/F1SDI6" } ], "pmid": "" }, { "name": "PH domain binding", "id": "GO:0042731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042731", "evidence": [ { "database": "UniProtKB", "id": "F1SDI6", "url": "https://www.uniprot.org/uniprotkb/F1SDI6" } ], "pmid": "" }, { "name": "inositol-1,4,5-trisphosphate 5-phosphatase activity", "id": "GO:0052658", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052658", "evidence": [ { "database": "UniProtKB", "id": "F1SDI6", "url": "https://www.uniprot.org/uniprotkb/F1SDI6" } ], "pmid": "" }, { "name": "inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity", "id": "GO:0052659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052659", "evidence": [ { "database": "UniProtKB", "id": "F1SDI6", "url": "https://www.uniprot.org/uniprotkb/F1SDI6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SDI6", "url": "https://www.uniprot.org/uniprotkb/F1SDI6" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "F1SDI6", "url": "https://www.uniprot.org/uniprotkb/F1SDI6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 329, "end_pos": 331, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-1855222", "name": "I(1,4,5)P3 is dephosphorylated to I(1,4)P2 by INPP5A/B at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1855222", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855222" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDI6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 469, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDI6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDI6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDI6" }, { "id": "SM00128", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00128" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Inositol polyphosphate-related phosphatase", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 431, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 329, "end_pos": 331 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S8W6-1", "uniprot_ac": "F1S8W6", "uniprot_id": "F1S8W6_PIG", "mass": { "chemical_mass": 103758.0, "monoisotopic_mass": 103758.0 }, "refseq": { "ac": "XP_005671437", "name": "metal transporter CNNM1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671437" }, "gene_names": [ { "name": "CNNM1", "type": "recommended", "evidence": [ { "id": "F1S8W6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8W6" } ] }, { "name": "CNNM1", "type": "synonym", "evidence": [ { "id": "XP_005671437", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671437" } ] } ], "protein_names": [ { "name": "Metal transporter", "type": "recommended", "evidence": [ { "id": "F1S8W6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8W6/entry#names_and_taxonomy" } ] }, { "name": "metal transporter CNNM1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005671437", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671437" } ] } ], "function": [ { "annotation": "Metal transporter.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BT74", "url": "https://www.uniprot.org/uniprotkb/A0A287BT74#function" }, { "database": "UniProtKB", "id": "RU369091", "url": "https://www.uniprot.org/uniprotkb/RU369091#function" }, { "database": "UniProtKB", "id": "F1S8W6", "url": "https://www.uniprot.org/uniprotkb/F1S8W6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S8W6", "url": "https://www.uniprot.org/uniprotkb/F1S8W6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CNNM1", "url": "https://www.uniprot.org/uniprotkb/F1S8W6", "locus": { "chromosome": "14", "start_pos": 110601718, "end_pos": 110539427, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010536", "url": "https://www.ensembl.org/id/ENSSSCG00000010536" } ] } } ], "crossref": [ { "id": "F1S8W6", "url": "https://alphafold.ebi.ac.uk/entry/F1S8W6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010536", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010536", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04590", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04590", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154357", "url": "https://www.ncbi.nlm.nih.gov/gene/100154357", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000644", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000644", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002550", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002550", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045095", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045095", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046342", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046342", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057492", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057492", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154357", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154357", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NSIMCSR", "url": "https://omabrowser.org/oma/group/NSIMCSR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BT74", "url": "https://www.orthodb.org/?gene=A0A287BT74", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1S8W6", "url": "https://www.orthodb.org/?gene=F1S8W6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12064", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12064", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12064:SF28", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12064:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00571", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00571", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25511", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25511", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005671437", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671437", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BT74", "url": "https://www.uniprot.org/uniprotkb/A0A287BT74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BT74-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT74-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8W6", "url": "https://www.uniprot.org/uniprotkb/F1S8W6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8W6-1", "url": "https://www.uniprot.org/uniprotkb/F1S8W6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAAAAVGFRLRDCCSQGAVLLLFFSLSPRPPAAAAWLLGLRPEDTAGGRVSLEGGTLRAAEGTSFLLRVYFQPGPAAPVAPVPAPTLSPGENGTGDWAPRLVFIEEPPGGSGVAPSAVPTRPPGPQRCREQSDWASDVEVLGPLRPGGVAGSALVQVRVRELRKGEAERSGAGGGGKLFSLCAWDGRAWHHHGAAGGFLLRVRPRLYGPGGDLLPPAWLRALGALLLLALSALFSGLRLSLLSLDPVELRVLRNSGSAAEQEQARRVQAVRGRGTHLLCTLLLGQAGANAALAGWLYASLPPGVGDAGEDYGDAGIHFPWLPALVCTGAVFLGAEICPYSVCSRHGLAIASHSVCLTRLLMAAAFPVCYPLGRLLDWALRQEISTFYTREKLLETLRAADPYSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPVYEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKGKSHLAIVQRVNNEGEGDPFYEVMGIVTLEDIIEEIIKSEILDETDLYTDNRKKQRVPHRERKRHDFSLFKLSDSEMRVKISPQLLLATHRFMATEVEPFKSLYLSEKILLRLLKHPNVIQELKFDEKNKKAPEHYLYQRNRPVDYFVLLLQGKVEVEVGKEGLRFENGAFTYYGVPAIMTTACSDNDVRKVGSLAGSSAFLNRSPSRCSGLNRSESPNRERSDFGGSNTQLCSSSNNLYTPDYSVHILSDVQFVKVTRQQYQNALTACHMDSSPQSPDMEAFTDGDSTKAPTTRGTPQTPKEDPAATLLSNRNILPCSRSDGLRSPGEVVYLRMEETAFAQEEMTDLEEPSTQQLSLSPAAVPVRAGSDSECCHINLDTETSPCSSDFEETMGKKLLRTLSGRKRKRSPDGERTSEENSNLTPLIT", "length": 948, "header": "tr|F1S8W6-1|F1S8W6_PIG Isoform 1 of Metal transporter OS=Sus scrofa OX=9823 GN=CNNM1 PE=3 SV=5 CANONICAL=F1S8W6-1" }, "isoforms": [ { "isoform_ac": "A0A287BT74-1", "url": "https://www.uniprot.org/uniprotkb/F1S8W6/entry#A0A287BT74-1", "sequence": { "sequence": "MAAAAAAVGFRLRDCCSQGAVLLLFFSLSPRPPAAAAWLLGLRPEDTAGGRVSLEGGTLRAAEGTSFLLRVYFQPGPAAPVAPVPAPTLSPGENGTGDWAPRLVFIEEPPGGSGVAPSAVPTRPPGPQRCREQSDWASDVEVLGPLRPGGVAGSALVQVRVRELRKGEAERSGAGGGGKLFSLCAWDGRAWHHHGAAGGFLLRVRPRLYGPGGDLLPPAWLRALGALLLLALSALFSGLRLSLLSLDPVELRVLRNSGSAAEQEQARRVQAVRGRGTHLLCTLLLGQAGANAALAGWLYASLPPGVGDAGEDYGDAGIHFPWLPALVCTGAVFLGAEICPYSVCSRHGLAIASHSVCLTRLLMAAAFPVCYPLGRLLDWALRQEISTFYTREKLLETLRAADPYSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPVYEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKGKSHLAIVQRVNNEGEGDPFYEVMGIVTLEDIIEEIIKSEILDETDLYTDNRKKQRVPHRERKRHDFSLFKLSDSEMRVKISPQLLLATHRFMATEVEPFKSLYLSEKILLRLLKHPNVIQELKFDEKNKKAPEHYLYQRNRPVDYFVLLLQGKVEVEVGKEGLRFENGAFTYYGVPAIMTTACSDNDVRKVGSLAGSSAFLPVSVSRTFAFSRGDSLAGSPVNRSPSRCSGLNRSESPNRERSDFGGSNTQLCSSSNNLYTPDYSVHILSDVQFVKVTRQQYQNALTACHMDSSPQSPDMEAFTDGDSTKAPTTRGTPQTPKEDPAATLLSNRNILPCSRSDGLRSPGEVVYLRMEETAFAQEEMTDLEEPSTQQLSLSPAAVPVRAGSDSECCHINLDTETSPCSSDFEETMGKKLLRTLSGRKRKRSPDGERTSEENSNLTPLIT", "length": 969, "header": "tr|A0A287BT74-1|F1S8W6_PIG Computationally mapped isoform of Metal transporter OS=Sus scrofa OX=9823 GN=CNNM1 PE=3 SV=2 CANONICAL=F1S8W6-1" }, "locus": { "chromosome": "14", "start_pos": 110599377, "end_pos": 110539739, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050252.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050252.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059381.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059381.2" } ] } }, { "isoform_ac": "F1S8W6-1", "url": "https://www.uniprot.org/uniprotkb/F1S8W6/entry#F1S8W6-1", "sequence": { "sequence": "MAAAAAAVGFRLRDCCSQGAVLLLFFSLSPRPPAAAAWLLGLRPEDTAGGRVSLEGGTLRAAEGTSFLLRVYFQPGPAAPVAPVPAPTLSPGENGTGDWAPRLVFIEEPPGGSGVAPSAVPTRPPGPQRCREQSDWASDVEVLGPLRPGGVAGSALVQVRVRELRKGEAERSGAGGGGKLFSLCAWDGRAWHHHGAAGGFLLRVRPRLYGPGGDLLPPAWLRALGALLLLALSALFSGLRLSLLSLDPVELRVLRNSGSAAEQEQARRVQAVRGRGTHLLCTLLLGQAGANAALAGWLYASLPPGVGDAGEDYGDAGIHFPWLPALVCTGAVFLGAEICPYSVCSRHGLAIASHSVCLTRLLMAAAFPVCYPLGRLLDWALRQEISTFYTREKLLETLRAADPYSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPVYEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKGKSHLAIVQRVNNEGEGDPFYEVMGIVTLEDIIEEIIKSEILDETDLYTDNRKKQRVPHRERKRHDFSLFKLSDSEMRVKISPQLLLATHRFMATEVEPFKSLYLSEKILLRLLKHPNVIQELKFDEKNKKAPEHYLYQRNRPVDYFVLLLQGKVEVEVGKEGLRFENGAFTYYGVPAIMTTACSDNDVRKVGSLAGSSAFLNRSPSRCSGLNRSESPNRERSDFGGSNTQLCSSSNNLYTPDYSVHILSDVQFVKVTRQQYQNALTACHMDSSPQSPDMEAFTDGDSTKAPTTRGTPQTPKEDPAATLLSNRNILPCSRSDGLRSPGEVVYLRMEETAFAQEEMTDLEEPSTQQLSLSPAAVPVRAGSDSECCHINLDTETSPCSSDFEETMGKKLLRTLSGRKRKRSPDGERTSEENSNLTPLIT", "length": 948, "header": "tr|F1S8W6-1|F1S8W6_PIG Isoform 1 of Metal transporter OS=Sus scrofa OX=9823 GN=CNNM1 PE=3 SV=5 CANONICAL=F1S8W6-1" }, "locus": { "chromosome": "14", "start_pos": 110599377, "end_pos": 110539739, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011526.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011526.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011225.5", "url": "https://www.ensembl.org/id/ENSSSCP00000011225.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BT74", "url": "https://www.uniprot.org/uniprotkb/A0A287BT74" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154357", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154357", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1NLJ1-1", "protein_name": "Metal transporter", "gene_name": "CNNM1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAAAAVGVRLRDCCSRGAVLLLFFSLSPRPPAAAAWLLGLRPEDTAGGRVSLEGGTLRAAEGTSFLLRVYFQPGPAAPAAPVPAPTFSPGENSTGDWAPRLVFIEEPPGGSGAAPSAVPTRPPGPQRCREQSDWASDVEVLGPLRPGGVAGSALVQVRVRELRKGEAERGGAGGGGKLFSLCAWDGRAWHHHGAAGGFLLRVRPRLYGPGGDLLPPAWLRALGALLLLALSALFSGLRLSLLSLDPVELRVLRNSGSAAEQEQARRVQAVRGRGTHLLCTLLLGQAGANAALAGWLYASLPPGVEGTGEDYGDAGIHFPWLPALVCTGAVFLGAEICPYSVCSRHGLAIASHSVCLTRLLMAAAFPVCYPLGRLLDWALRQEISTFYTREKLLETLRAADPYSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPVYEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKGKSHLAIVQRVNNEGEGDPFYEVMGIVTLEDIIEEIIKSEILDETDLYTDNRKKQRVPHRERKRHDFSLFKLSDSEMRVKISPQLLLATHRFMATEVEPFKSLYLSEKILLRLLKHPNVIQELKFDEKNKKAPEHYLYQRNRPVDYFVLLLQGKVEVEVGKEGLRFENGAFTYYGVPAIMTTACSDNDVRKVGSLAGSSVFLNRSPSRCSGLNRSESPNRERSDFGGSNTQLCSSSNNLYTPDYSVHILSDVQFVKVTRQQYQNALTACHMESSPQSPDMEASTTRGTPQTPKDDPAATLLSHRSSLPCSRSDGLRSPGEVVYLRMEEMAFTREEMTDFEEQNTQQLSLSPAAVPARAASDSECCHINVDTEASPCSSDLEETMGRKLLRTLSGRKRKRSPDGERTSEENSNLTPLIT", "length": 939 }, "evidence": [ { "id": "F1S8W6", "url": "https://omabrowser.org/oma/group/F1S8W6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8I6ATT3-1", "protein_name": "Metal transporter", "gene_name": "Cnnm1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAAAAAAALGVRLRDCCSRGAVLLLFFSLSPRPPAAAAWLLGLRPEDTAGGRVSLEGGTLRAAEGTSFLLRVYFQPGPAVPAAPVPAPSLAPGENGTGDWAPRLVFIEEPPGAGSAAPSAVPTRPPGPQRCREQSDWASDVEVLGPLRPGGVAGSALVQVRVRELRKGEAERGGAGGGGKLFSLCAWDGRAWHHHGAAGGFLLRVRPRLYGPGGDLLPPAWLRALGALLLLALSALFSGLRLSLLSLDPVELRVLRNSGSAAEQEQARRVQAVRGRGTHLLCTLLLGQAGANAALAGWLYASLPPGVGDPGEDSGEAGVHFPWLPALVCTGAVFLGAEICPYSVCSRHGLAIASHSVCLTRLLMAAAFPVCYPLGRLLDWALRQEISTFYTREKLLETLRAADPYSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPVYEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKGKSHLAIVQRVNNEGEGDPFYEVMGIVTLEDIIEEIIKSEILDETDLYTDNRKKQRVPHRERRRHDFSLFKLSDSEIRVKISPQLLLATHRFMATEVEPFKSLYLSEKILLRLLKHPNVIQELKFDERNKKAPEHYLYQRSRPVDYFVLLLQGKVEVEVGKEGLRFENGAFTYYGVPAIMTSACSDNDVRKVGSLAGSSVFLNRSPSRCSGLNRSESPNRERSDFGGSNTQLCSNNLYTPDYSVHILSDVQFVKITRQQYQNALTACHMDSSPQSPDMEAFTDGDSTKAPTTRGTPQTPKDDPVLTLLSNRTSLPCSRSDGLRSPGEVVYLRMEEMAFPQEEMPNFEEHKAQQVSLSPVTVPTAAASETECCNIHLDPEASPCSSDSEETMGKKLLRTLSGRKRKKSADGERASEENSNLTPLIT", "length": 949 }, "evidence": [ { "id": "F1S8W6", "url": "https://omabrowser.org/oma/group/F1S8W6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q0GA42-1", "protein_name": "Metal transporter CNNM1", "gene_name": "Cnnm1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAAAAAALGVRLRDCCSRGAVLLLFFSLSPRPPAAAAWLLGLRPEDTAGGRVSLEGGTLRAAEGTSFLLRVYFQPGPPVPAAPVPAPSLAPGENGTGDWAPRLVFIEEPPGAGGAAPSAVPTRPPGPQRCREQSDWASDVEVLGPLRPGGVAGSALVQVRVRELRKGEAERGGAGGGGKLFSLCAWDGRAWHHHGAAGGFLLRVRPRLYGPGGDLLPPAWLRALGALLLLALSALFSGLRLSLLSLDPVELRVLRNSGSAAEQEQARRVQAVRGRGTHLLCTLLLGQAGANAALAGWLYASLPPGVGDPGEDSGEAGVHFPWLPALVCTGAVFLGAEICPYSVCSRHGLAIASHSVCLTRLLMAAAFPVCYPLGRLLDWALRQEISTFYTREKLLETLRAADPYSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPVYEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKGKSHLAIVQRVNNEGEGDPFYEVMGIVTLEDIIEEIIKSEILDETDLYTDNRKKQRVPHRERRRHDFSLFKLSDSEIRVKISPQLLLATHRFMATEVEPFKSLYLSEKILLRLLKHPNVIQELKFDERNKKAPEHYLYQRNRPVDYFVLLLQGKVEVEVGKEGLRFENGAFTYYGVPAIMTSACSDNDVRKVGSLAGSSVFLNRSPSRCSGLNRSESPNRERSDFGGSNTQLYSSSNNLYTPDYSVHILSDVQFVKITRQQYQNALTACHMDSSPQSPDMEAFTDGDSTKAPTTRGTPQTPKDDPVLTLLSNRTSLPCSRSDGLRSPGEVVYLRMEEMAFPQEEMPNFEEHRSQQVSLSPVAVPTTAASDPECCNIHLDPEASPCSSDSEENMGKKLLRTLSGRKRKKSADGERASEENSNLTPLIT", "length": 951 }, "evidence": [ { "id": "F1S8W6", "url": "https://omabrowser.org/oma/group/F1S8W6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NRU3-1", "protein_name": "Metal transporter CNNM1", "gene_name": "CNNM1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAAAAAAAVGVRLRDCCSRGAVLLLFFSLSPRPPAAAAWLLGLRPEDTAGGRVSLEGGTLRAAEGTSFLLRVYFQPGPPATAAPVPSPTLNSGENGTGDWAPRLVFIEEPPGGGGVAPSAVPTRPPGPQRCREQSDWASDVEVLGPLRPGGVAGSALVQVRVRELRKGEAERGGAGGGGKLFSLCAWDGRAWHHHGAAGGFLLRVRPRLYGPGGDLLPPAWLRALGALLLLALSALFSGLRLSLLSLDPVELRVLRNSGSAAEQEQARRVQAVRGRGTHLLCTLLLGQAGANAALAGWLYTSLPPGFGGTGEDYSEEGIHFPWLPALVCTGAVFLGAEICPYSVCSRHGLAIASHSVCLTRLLMAAAFPVCYPLGRLLDWALRQEISTFYTREKLLETLRAADPYSDLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPVYEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKGKSHLAIVQRVNNEGEGDPFYEVMGIVTLEDIIEEIIKSEILDETDLYTDNRKKQRVPQRERKRHDFSLFKLSDTEMRVKISPQLLLATHRFMATEVEPFKSLYLSEKILLRLLKHPNVIQELKFDEKNKKAPEHYLYQRNRPVDYFVLLLQGKVEVEVGKEGLRFENGAFTYYGVPAIMTTACSDNDVRKVGSLAGSSVFLNRSPSRCSGLNRSESPNRERSDFGGSNTQLYSSSNNLYMPDYSVHILSDVQFVKITRQQYQNALTACHMDSSPQSPDMEAFTDGDSTKAPTTRGTPQTPKDDPAITLLNNRNSLPCSRSDGLRSPSEVVYLRMEELAFTQEEMTDFEEHSTQQLTLSPAAVPTRAASDSECCNINLDTETSPCSSDFEENVGKKLLRTLSGQKRKRSPEGERTSEDNSNLTPLIT", "length": 951 }, "evidence": [ { "id": "F1S8W6", "url": "https://omabrowser.org/oma/group/F1S8W6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S8W6", "url": "https://www.uniprot.org/uniprotkb/F1S8W6" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "F1S8W6", "url": "https://www.uniprot.org/uniprotkb/F1S8W6" } ], "pmid": "" }, { "name": "neuronal cell body", "id": "GO:0043025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043025", "evidence": [ { "database": "UniProtKB", "id": "F1S8W6", "url": "https://www.uniprot.org/uniprotkb/F1S8W6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "monoatomic ion transport", "id": "GO:0006811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006811", "evidence": [ { "database": "UniProtKB", "id": "F1S8W6", "url": "https://www.uniprot.org/uniprotkb/F1S8W6" } ], "pmid": "" }, { "name": "magnesium ion homeostasis", "id": "GO:0010960", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010960", "evidence": [ { "database": "UniProtKB", "id": "F1S8W6", "url": "https://www.uniprot.org/uniprotkb/F1S8W6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F1S8W6", "url": "https://www.uniprot.org/uniprotkb/F1S8W6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 508, "end_pos": 510, "annotation": "n_glycosylation_sequon" }, { "start_pos": 724, "end_pos": 726, "annotation": "n_glycosylation_sequon" }, { "start_pos": 734, "end_pos": 736, "annotation": "n_glycosylation_sequon" }, { "start_pos": 942, "end_pos": 944, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S8W6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 948, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S8W6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S8W6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S8W6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8W6" }, { "id": "PS51371", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51371" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CBS", "eco_id": "ECO_0000259", "start_pos": 499, "end_pos": 565, "start_aa": "Tyr", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1S8W6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8W6" }, { "id": "PS51846", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51846" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CNNM transmembrane", "eco_id": "ECO_0000259", "start_pos": 215, "end_pos": 411, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 508, "end_pos": 510 }, { "start_pos": 724, "end_pos": 726 }, { "start_pos": 734, "end_pos": 736 }, { "start_pos": 942, "end_pos": 944 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S8E9-1", "uniprot_ac": "F1S8E9", "uniprot_id": "F1S8E9_PIG", "mass": { "chemical_mass": 63096.0, "monoisotopic_mass": 63096.0 }, "refseq": { "ac": "XP_003123084", "name": "nicalin isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123084" }, "gene_names": [ { "name": "NCLN", "type": "recommended", "evidence": [ { "id": "F1S8E9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8E9" } ] }, { "name": "NCLN", "type": "synonym", "evidence": [ { "id": "XP_003123084", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123084" } ] } ], "protein_names": [ { "name": "Nicalin", "type": "recommended", "evidence": [ { "id": "F1S8E9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8E9/entry#names_and_taxonomy" } ] }, { "name": "nicalin isoform X5", "type": "synonym", "evidence": [ { "id": "XP_003123084", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123084" } ] } ], "function": [ { "annotation": "Component of the multi-pass translocon (MPT) complex that mediates insertion of multi-pass membrane proteins into the lipid bilayer of membranes. The MPT complex takes over after the SEC61 complex: following membrane insertion of the first few transmembrane segments of proteins by the SEC61 complex, the MPT complex occludes the lateral gate of the SEC61 complex to promote insertion of subsequent transmembrane regions. May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning, via its interaction with NOMO.", "evidence": [ { "database": "UniProtKB", "id": "A0A481CWD2", "url": "https://www.uniprot.org/uniprotkb/A0A481CWD2#function" }, { "database": "UniProtKB", "id": "ARBA00045839", "url": "https://www.uniprot.org/uniprotkb/ARBA00045839#function" }, { "database": "UniProtKB", "id": "F1S8E9", "url": "https://www.uniprot.org/uniprotkb/F1S8E9#function" }, { "database": "UniProtKB", "id": "A0A5G2RC05", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RC05#function" } ] }, { "annotation": "May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning.", "evidence": [ { "database": "UniProtKB", "id": "A0A481CWD2", "url": "https://www.uniprot.org/uniprotkb/A0A481CWD2#function" }, { "database": "UniProtKB", "id": "PIRNR011018", "url": "https://www.uniprot.org/uniprotkb/PIRNR011018#function" }, { "database": "UniProtKB", "id": "F1S8E9", "url": "https://www.uniprot.org/uniprotkb/F1S8E9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S8E9", "url": "https://www.uniprot.org/uniprotkb/F1S8E9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NCLN", "url": "https://www.uniprot.org/uniprotkb/F1S8E9", "locus": { "chromosome": "2", "start_pos": 75369955, "end_pos": 75390545, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013475", "url": "https://www.ensembl.org/id/ENSSSCG00000013475" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013475", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013475", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03882", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03882", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518176", "url": "https://www.ncbi.nlm.nih.gov/gene/100518176", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007484", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007484", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518176", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518176", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WSTSRHC", "url": "https://omabrowser.org/oma/group/WSTSRHC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A481CWD2", "url": "https://www.orthodb.org/?gene=A0A481CWD2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1S8E9", "url": "https://www.orthodb.org/?gene=F1S8E9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31826", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31826", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04389", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04389", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003123084", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123084", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A481CWD2", "url": "https://www.uniprot.org/uniprotkb/A0A481CWD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481CWD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CWD2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RC05", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RC05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RC05-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RC05-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8E9", "url": "https://www.uniprot.org/uniprotkb/F1S8E9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8E9-1", "url": "https://www.uniprot.org/uniprotkb/F1S8E9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLEEAGEVLENMLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQPYGTRNAVLNTEARTIDADVLSRRCVLMRLLDFSYERYQRALRQSAGAVVIILPRAMAAVPQDVVRQFMEIEPEMLAMETIVPVYFAVEDDALLSIYEQTQAASASQGSASAAEVLLHTATANGFQMVTSGVQSKAVSDWLITSVEGRLTGLGGEDLPTIVIVAHYDAFGVAPWLSHGADSNGSGISVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTVGRGDSLHLHVSKPPREGTLQHAFLRELEMVAAHQFPEVRFSMVHKKINLAEDILAWEHERFAIRRLPAFTLSHLESHRDGQRSSIMDVRSRVDSKTLTRNTRLIAEALTRVIYNLTEKGTPPDMPVFTEQMQIQQEQLDSVMDWLTTQPRAAQLVDKDGTFLSTLEHHLGRYLKEVKQHHIKADKRDPEFVFYDQLKQVMNAYRVKPAIFDLLLAVCIGAYLGMAYTAVQHFDLLYKTVQRLLKAKTQ", "length": 562, "header": "tr|F1S8E9-1|F1S8E9_PIG Isoform 1 of Nicalin OS=Sus scrofa OX=9823 GN=NCLN PE=1 SV=1 CANONICAL=F1S8E9-1" }, "isoforms": [ { "isoform_ac": "A0A481CWD2-1", "url": "https://www.uniprot.org/uniprotkb/F1S8E9/entry#A0A481CWD2-1", "sequence": { "sequence": "MLEEAGEVLENMLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQPYGTRNAVLNTEARTIDADVLSRRCVLMRLLDFSYERYQRALRQSAGAVVIILPRAMAAVPQDVVRQFMEIEPEMLAMETIVPVYFAVEDDALLSIYEQTQAASASQGSASAAEVLLHTATANGFQMVTSGVQSKAVSDWLITSVEGRLTGLGGEDLPTIVIVAHYDAFGVAPWLSHGADSNGSGISVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTVGRGDSLHLHVSKPPREGTLQHAFLRELEMVAAHQFPEVRFSMVHKKINLAEDILAWEHERFAIRRLPAFTLSHLESHRDGQRSSIMDVRSRVDSKTLTRNTRLIAEALTRVIYNLTEKGTPPDMPVFTEQMIQQEQLDSVMDWLTTQPRAAQLVDKDGTFLSTLEHHLGRYLKEVKQHHIKADKRDPEFVFYDQLKQVMNAYRVKPAIFDLLLAVCIGAYLGMAYTAVQHFDLLYKTVQRLLKAKTQ", "length": 561, "header": "tr|A0A481CWD2-1|F1S8E9_PIG Computationally mapped isoform of Nicalin OS=Sus scrofa OX=9823 GN=NCLN PE=1 SV=1 CANONICAL=F1S8E9-1" }, "locus": { "chromosome": "2", "start_pos": 75390416, "end_pos": 75375420, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067121.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067121.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070175.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070175.1" } ] } }, { "isoform_ac": "A0A5G2RC05-1", "url": "https://www.uniprot.org/uniprotkb/F1S8E9/entry#A0A5G2RC05-1", "sequence": { "sequence": "MLEEAGEVLENMLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQPYGTRNAVLNTEARTIDADVLSRRCVLMRLLDFSYERYQRALRQSAGAVVIILPRAMAAVPQDVVRQFMEIEPEMLAMETIVPVYFAVEDDALLSIYEQTQAASASQGSASAAEVLLHTATANGFQMVTSGVQSKAVSDWLITSVEGRLTGLGGEDLPTIVIVAHYDAFGVAPWLSHGADSNGSGISVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTVGRGDSLHLHVSKPPREGTLQHAFLRELEMVAAHQFPEVRFSMVHKKINLAEDILAWEHERFAIRRLPAFTLSHLESHRDGQRSSIMDVRSRVDSKTLTRNTRLIAEALTRVIYNLTEKGTPPDMPVFTEQMIQQEQLDSVMDWLTTQPRAAQLVDKDGTFLSTLEHHLGRYLKEVKQHHIKADKRDPEFVFYDQLKQVMNAYRVKPAIFDLLLAVCIGAYLGMAYTAVQVSGGGAGPPDQASPHRRPSHWWGGPDLTGALPLPPALRPPVQNCSETAEGQDAVTRPPALSCSTLVEGRASLPRRGNSELQSFSVLLLRIWGLLSLFCPSSSLGGALVEVQARLWTWSGTSAWTSPQPQSWPRGPQGIKATGGKRKCPQHSLPMTLTLDLAVAG", "length": 707, "header": "tr|A0A5G2RC05-1|F1S8E9_PIG Computationally mapped isoform of Nicalin OS=Sus scrofa OX=9823 GN=NCLN PE=1 SV=1 CANONICAL=F1S8E9-1" }, "locus": { "chromosome": "2", "start_pos": 75390416, "end_pos": 75375088, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086182.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086182.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073890.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073890.1" } ] } }, { "isoform_ac": "F1S8E9-1", "url": "https://www.uniprot.org/uniprotkb/F1S8E9/entry#F1S8E9-1", "sequence": { "sequence": "MLEEAGEVLENMLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQPYGTRNAVLNTEARTIDADVLSRRCVLMRLLDFSYERYQRALRQSAGAVVIILPRAMAAVPQDVVRQFMEIEPEMLAMETIVPVYFAVEDDALLSIYEQTQAASASQGSASAAEVLLHTATANGFQMVTSGVQSKAVSDWLITSVEGRLTGLGGEDLPTIVIVAHYDAFGVAPWLSHGADSNGSGISVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTVGRGDSLHLHVSKPPREGTLQHAFLRELEMVAAHQFPEVRFSMVHKKINLAEDILAWEHERFAIRRLPAFTLSHLESHRDGQRSSIMDVRSRVDSKTLTRNTRLIAEALTRVIYNLTEKGTPPDMPVFTEQMQIQQEQLDSVMDWLTTQPRAAQLVDKDGTFLSTLEHHLGRYLKEVKQHHIKADKRDPEFVFYDQLKQVMNAYRVKPAIFDLLLAVCIGAYLGMAYTAVQHFDLLYKTVQRLLKAKTQ", "length": 562, "header": "tr|F1S8E9-1|F1S8E9_PIG Isoform 1 of Nicalin OS=Sus scrofa OX=9823 GN=NCLN PE=1 SV=1 CANONICAL=F1S8E9-1" }, "locus": { "chromosome": "2", "start_pos": 75390416, "end_pos": 75375420, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014720.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014720.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014322.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014322.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A481CWD2", "url": "https://www.uniprot.org/uniprotkb/A0A481CWD2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518176", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518176", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1NCG7-1", "protein_name": "Nicalin", "gene_name": "NCLN", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLEEAGEVLENMLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQPYGTRNAVLNTEARTIDADVLSRRCVLVRLLDFSYERYQRALRQSAGAVVIILPRTMAAVPQDVIRQFMEIEPEMLAMETIVPVYFAVEDDALLSIYEQTQAASASQGSASAAEVLLHTATANGFQMVTSGVQSKAVSDWLITSVEGRLTGLGGEDLPTIVIVAHYDAFGVAPWLSHGADSNGSGISVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTVGRGDSLHLHVSKPPREGTLQHAFLRELETVAAHQFPEVRFSMVHKKINLAEDMLAWEHERFAVRRLPAFTLSHLQSHRDGQRSSIMDVRSRVDSKTLTRNTRLIAEALTRVIYNLTEKGTPPDMPVFTEQMQIQQEQLDSVMDWLTTQPRAAQLVDKDGTFLSTLEHYLSRYLKEVKPHHVKADKRDPEFVFYDQLKQVMNAYRVKPAIFDLLLAVCIGAYLGMAYTAVQHFDLLYKTVQRLLKAKTQ", "length": 562 }, "evidence": [ { "id": "F1S8E9", "url": "https://omabrowser.org/oma/group/F1S8E9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V1A7C5-1", "protein_name": "Nicalin", "gene_name": "NCLN", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLEEAGEVLESVLKASCLPLSFLLFVPAVLLLLGPPPAAEAAHEFTVYRMQQYELGGQPYGTRSAVLNTEARTVEADVLSRRCVMMRLVDFSYEQYQKALRQSAGAVVIILPRSISSVPQDVVKQFMEIEPEMLAMETIVPVYFAVEDDELLSIYEQTRAASASQGSASAAEVLLHTATANGFQMVTSGAQSKAIHDWLIPSVEGRLTGLGGEDLPTVVIVAHYDSFGVAPWLSHGADSNGSGVSVLLELARLFSRLYTYRRTHAGYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTLGRGNSLHLHVSKPPKEGTLQHAFLRELEMVVASQFPEVKFSMVHKKINLAEDILAWEHERFAIRRLPAFTISHLESHRDSLRNSIMDRRSQVDTKALTRNTRIIAEALTRVIYNLTEKGAPADLQIFTDQMQIQEEQLESVMDWLSSQPRAAQLIDKDSTFLSTLEYYMGRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAIFDLLLAVCIAAYLGVAYIAVQNFGLLYRMIQRLSLKTKQQ", "length": 562 }, "evidence": [ { "id": "F1S8E9", "url": "https://omabrowser.org/oma/group/F1S8E9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7JTP5-1", "protein_name": "Nicalin", "gene_name": "Ncln", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLEEAGEVLENVLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQPYGTRNAVLNTEARTVDADVLSRRCVLMRLLDFSYEHYQKALRQSAGAVVIILPRAMAAVPQDVVRQFMEIEPEMLAMETVVPVYFAVEDEALLSIYEQTQAASASQGSASAAEVLLHTATANGFQMVTSGAQSQAVSDWLITSVEGRLTGLGGEDLPTIVIVAHYDAFGVAPWLSLGADSNGSGISVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDSLDHTDSSLLQDNVAFVLCLDTVGRGSHLRLHVSKPPREGTLQHAFLRELETVAAHQFPDVSFSMVHKKINLADDVLAWEHERFAIRRLPAFTLSHLESHRAGPRSSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQVQQEQLDSVMDWLTNQPRAAQLLDKDGTFLSTLEHFLSRYLKDVRQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAIFDLLLAVCIGAYLGLAYTAVQHFHVLYKTVQRLLLKAKAQ", "length": 563 }, "evidence": [ { "id": "F1S8E9", "url": "https://omabrowser.org/oma/group/F1S8E9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5XIA1-1", "protein_name": "BOS complex subunit NCLN", "gene_name": "Ncln", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLEEAGEVLENVLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQPYGTRNAVLNTEARTVDADVLSRRCVLMRLLDFSYEHYQKALRQSAGAVVIILPRAMAAVPQDVVRQFMEIEPEMLAMETVVPVYFAVEDEALLSIYEQTQAASASQGSASAAEVLLHTATANGFQMVTSGAQSQAVSDWLITSVEGRLTGLGGEDLPTIVIVAHYDAFGVAPWLSLGADSNGSGISVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDSLDHTDSSLLQDNVAFVLCLDTVGRGSHLRLHVSKPPREGTLQHVFLRELEMVAAHQFPDVSFSMVHKKINLADDVLAWEHERFAIRRLPAFTLSHLENHRAGPRSSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQVQQEQIDSVMDWLTNQPRAAQLLDKDGTFLSTLEHFLSRYLKDVRQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAIFDLLLALCIGAYLGMAYTAVQHFHVLYKTVQRLLLKAKAQ", "length": 563 }, "evidence": [ { "id": "F1S8E9", "url": "https://omabrowser.org/oma/group/F1S8E9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6NZ07-1", "protein_name": "BOS complex subunit ncln", "gene_name": "ncln", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFEEAGEVLENMLKVSFPLSLVLFLVLVCPLRAEAAHEFSVYRMQQYDLQGQTYGSRNAILNTEARTVEAEVLSRRCVMMRLADFSYEKYQKALRQSAGAVVIILPHNMSTLPQDIVQQFMELEPELLATETIVPVYFALEDEELLSIYTQTQISSSSQGSSSAAEVLLHTATANGFQMVTSGAQSKAVSDWAITSLEGRLTGSGGEDLPTIVLVAHYDSFGVAPWLSYGADSNGSGVAILLELARLFSRLYSYKRTHAGYNLLFFLSGGGKFNYQGTKRWLEDNLDHTDASLLQDNVAFVLCLDTLGNSDNLHLHVSKPPKEGSPQYTLLKELETVVAHQHPDLKFAMVHKKINLADDTLAWEHERFGIRRLPAFTLSHLESHRSPARHSIMDMRSVSPSLEGAGEATTGPHVDLGKLSRNTKVIAETLARVIYNLTEKGVTGDLEIFTEQMQVQEDQLASLVDWLTAQPRAAQLLDKDSSIINTLEHQLSRYLKDVKRHLVRADKRDPEFVFYDQLKQTMNAYRVKPAIFDLLLAVCIASYLGVLYLAIQNFGLLYGFLRRVTAPRVKQH", "length": 572 }, "evidence": [ { "id": "F1S8E9", "url": "https://omabrowser.org/oma/group/F1S8E9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8VCM8-1", "protein_name": "BOS complex subunit NCLN", "gene_name": "Ncln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLEEAGEVLENVLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQPYGTRNAVLNTEARTVDADVLSRRCVLMRLLDFSYEHYQKALRQSAGAVVIILPRAMAAVPQDVVRQFMEIEPEMLAMETVVPVYFAVEDEALLSIYEQTQAASASQGSASAAEVLLHTATANGFQMVTSGAQSQAVSDWLITSVEGRLTGLGGEDLPTIVIVAHYDAFGVAPWLSLGADSNGSGISVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDSLDHTDSSLLQDNVAFVLCLDTVGRGSHLRLHVSKPPREGTLQHAFLRELETVAAHQFPDVSFSMVHKKINLADDVLAWEHERFAIRRLPAFTLSHLESHRAGPRSSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQVQEEQIDSVMDWLTNQPRAAQLLDKDGTFLSTLEHFLSRYLKDVRQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAIFDLLLALCIGAYLGMAYTAVQHFHVLYKTVQRLLLKAKAQ", "length": 563 }, "evidence": [ { "id": "F1S8E9", "url": "https://omabrowser.org/oma/group/F1S8E9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q969V3-1", "protein_name": "BOS complex subunit NCLN", "gene_name": "NCLN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLEEAGEVLENMLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQPYGTRNAVLNTEARTMAAEVLSRRCVLMRLLDFSYEQYQKALRQSAGAVVIILPRAMAAVPQDVVRQFMEIEPEMLAMETAVPVYFAVEDEALLSIYKQTQAASASQGSASAAEVLLRTATANGFQMVTSGVQSKAVSDWLIASVEGRLTGLGGEDLPTIVIVAHYDAFGVAPWLSLGADSNGSGVSVLLELARLFSRLYTYKRTHAAYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTVGRGSSLHLHVSKPPREGTLQHAFLRELETVAAHQFPEVRFSMVHKRINLAEDVLAWEHERFAIRRLPAFTLSHLESHRDGQRSSIMDVRSRVDSKTLTRNTRIIAEALTRVIYNLTEKGTPPDMPVFTEQMQIQQEQLDSVMDWLTNQPRAAQLVDKDSTFLSTLEHHLSRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAVFDLLLAVGIAAYLGMAYVAVQHFSLLYKTVQRLLVKAKTQ", "length": 563 }, "evidence": [ { "id": "F1S8E9", "url": "https://omabrowser.org/oma/group/F1S8E9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9M292-1", "protein_name": "Nicalin", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAEEKKSKQRHRVMVFESMYPILALMLILVACVELCDAATVVDVYRLIQYDISGVPFGSRFSSLNHHAASLSFQRGADLSRSVLILPLRELDIAFVQDYISQKQSLGGLLILLPQTFRPGNVGGGSLSSENDGFRSLLGQLEKLLVHGNIPFPVYFAFENEETDAMLADVKKNDALGQQATATTGGYKLVISVSEPRKIASPTITNIQGWLPGLRAEGDSSQLPTIAVVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSVLYSNPKTRGKYNLLFALTSGGPYNYEGTQKWLKSLDQRMRESIDYAICLNSVGSWDSELLIHVSKPPDNAYIKQIFEGFSNVAEDLGFQVALKHKKINISNSRVAWEHEQFSRLRVTAATLSELSTPPELLENAGSLSDTRQLVNEDAIIKGVKLVAESLAKHIYGHQGKDIKIFADDSSLAVNPFYVRSWLDLLSQTPRVAPFLSKNEPLIMALKKELEDYTAEVSVQHESLDGSFTFYDSTKASLNIYQVASVTFDLLLLLVLGSYLIVLFSFLVITTRGLDDLISLFRRPPSRKVKMG", "length": 565 }, "evidence": [ { "id": "F1S8E9", "url": "https://omabrowser.org/oma/group/F1S8E9/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VKZ7-1", "protein_name": "Nicalin", "gene_name": "Q9VKZ7_DROME", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MMNEADSLTEIFRGGLPHCLLIVFSLLLTCSPVMPSEFEVISMSKYDLNGQHYGSRVASISLEARSLYSWNTSRHCVLTRLTDLSIHDFDKLRQGAGGLILMLPANILNLDPETKELITILEQSMLTHTAAVPIYFAPYNKDLEKIIDDITYTTTDSPGQNQTALAQLVVTVSANRYHINVGGGSIAANKNSKIPIIHGELIPNQLALKPTESVADGQKLPVILITANLKTFGIYNDYPVNADAAVLLVLMELFSKLHYTSSMAPKYRLRFLLSDAGVLLNFQGSKKWLEVDDNALQNVEFVLCLDTISESLSYTTENALYMHVSKPPKDKTSISNFFKLLKSSAEKYSNGLAVEGVHKKINLADTKLAWEHERFSIKRYPSFTLSSVKSPRSPIRTTIFKNDESRLVEHTLNTTRIIAEALASFMYKVDPTSSIFEGQLAIKEENILPYFGVKSILHNNDVKDAFEKYLNNVKIIYDKPDARDPEFMFYNENEVKLNVYRVKPAIFDLFLTFVIGAYLLAVFLAIQYFPRFYDEVSKLTKEDPAGQSNGHSSERVRMKSH", "length": 561 }, "evidence": [ { "id": "F1S8E9", "url": "https://omabrowser.org/oma/group/F1S8E9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1S8E9", "url": "https://www.uniprot.org/uniprotkb/F1S8E9" } ], "pmid": "" }, { "name": "multi-pass translocon complex", "id": "GO:0160064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160064", "evidence": [ { "database": "UniProtKB", "id": "F1S8E9", "url": "https://www.uniprot.org/uniprotkb/F1S8E9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "F1S8E9", "url": "https://www.uniprot.org/uniprotkb/F1S8E9" } ], "pmid": "" }, { "name": "multi-pass transmembrane protein insertion into ER membrane", "id": "GO:0160063", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160063", "evidence": [ { "database": "UniProtKB", "id": "F1S8E9", "url": "https://www.uniprot.org/uniprotkb/F1S8E9" } ], "pmid": "" }, { "name": "protein stabilization", "id": "GO:0050821", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050821", "evidence": [ { "database": "UniProtKB", "id": "F1S8E9", "url": "https://www.uniprot.org/uniprotkb/F1S8E9" } ], "pmid": "" }, { "name": "regulation of protein-containing complex assembly", "id": "GO:0043254", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043254", "evidence": [ { "database": "UniProtKB", "id": "F1S8E9", "url": "https://www.uniprot.org/uniprotkb/F1S8E9" } ], "pmid": "" }, { "name": "regulation of protein complex stability", "id": "GO:0061635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061635", "evidence": [ { "database": "UniProtKB", "id": "F1S8E9", "url": "https://www.uniprot.org/uniprotkb/F1S8E9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ribosome binding", "id": "GO:0043022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043022", "evidence": [ { "database": "UniProtKB", "id": "F1S8E9", "url": "https://www.uniprot.org/uniprotkb/F1S8E9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 428, "end_pos": 430, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S8E9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8E9" }, { "id": "PF04389", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04389" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase M28", "eco_id": "ECO_0000259", "start_pos": 217, "end_pos": 380, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 241, "end_pos": 243 }, { "start_pos": 428, "end_pos": 430 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1USX2-1", "uniprot_ac": "A0A4X1USX2", "uniprot_id": "A0A4X1USX2_PIG", "mass": { "chemical_mass": 23271.0, "monoisotopic_mass": 23271.0 }, "refseq": {}, "gene_names": [ { "name": "SKIC8", "type": "recommended", "evidence": [ { "id": "A0A4X1USX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX2" } ] } ], "protein_names": [ { "name": "Superkiller complex protein 8", "type": "recommended", "evidence": [ { "id": "A0A4X1USX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX2/entry#names_and_taxonomy" } ] }, { "name": "WD repeat-containing protein 61", "type": "synonym", "evidence": [ { "id": "A0A4X1USX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1USX2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SKIC8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX2", "locus": { "chromosome": "7", "start_pos": 47659866, "end_pos": 47641162, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001757", "url": "https://www.ensembl.org/id/ENSSSCG00000001757" } ] } } ], "crossref": [ { "id": "A0A4X1USX2", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1USX2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001757", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001757", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153204", "url": "https://www.ncbi.nlm.nih.gov/gene/100153204", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051510", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051510", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153204", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153204", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LDSSMCL", "url": "https://omabrowser.org/oma/group/LDSSMCL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1USX2", "url": "https://www.orthodb.org/?gene=A0A4X1USX2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RKU4", "url": "https://www.orthodb.org/?gene=F1RKU4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44090", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44090", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44090:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44090:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-112382", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-112382", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-429958", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-429958", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-674695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-674695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75955", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75955", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8866654", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866654", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9943411", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943411", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1USX2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1USX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RKU4", "url": "https://www.uniprot.org/uniprotkb/F1RKU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RKU4-1", "url": "https://www.uniprot.org/uniprotkb/F1RKU4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTNQYSILFKQEQVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI", "length": 212, "header": "tr|A0A4X1USX2-1|A0A4X1USX2_PIG Isoform 1 of Superkiller complex protein 8 OS=Sus scrofa OX=9823 GN=SKIC8 PE=1 SV=1 CANONICAL=A0A4X1USX2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1USX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX2/entry#A0A4X1USX2-1", "sequence": { "sequence": "MTNQYSILFKQEQVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI", "length": 212, "header": "tr|A0A4X1USX2-1|A0A4X1USX2_PIG Isoform 1 of Superkiller complex protein 8 OS=Sus scrofa OX=9823 GN=SKIC8 PE=1 SV=1 CANONICAL=A0A4X1USX2-1" }, "locus": { "chromosome": "7", "start_pos": 47659162, "end_pos": 47644367, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067395.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067395.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064876.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064876.1" } ] } }, { "isoform_ac": "F1RKU4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX2/entry#F1RKU4-1", "sequence": { "sequence": "MTNQYSILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI", "length": 305, "header": "tr|F1RKU4-1|A0A4X1USX2_PIG Computationally mapped isoform of Superkiller complex protein 8 OS=Sus scrofa OX=9823 GN=SKIC8 PE=1 SV=3 CANONICAL=A0A4X1USX2-1" }, "locus": { "chromosome": "7", "start_pos": 47659162, "end_pos": 47644367, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001963.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001963.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001914.3", "url": "https://www.ensembl.org/id/ENSSSCP00000001914.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RKU4", "url": "https://www.uniprot.org/uniprotkb/F1RKU4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153204", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153204", "resource": "KEGG Pathway" }, { "id": "R-SSC-112382", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-112382", "resource": "Reactome", "description": "Formation of RNA Pol II elongation complex" }, { "id": "R-SSC-429958", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-429958", "resource": "Reactome", "description": "mRNA decay by 3' to 5' exoribonuclease" }, { "id": "R-SSC-674695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-674695", "resource": "Reactome", "description": "RNA Polymerase II Pre-transcription Events" }, { "id": "R-SSC-75955", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75955", "resource": "Reactome", "description": "RNA Polymerase II Transcription Elongation" }, { "id": "R-SSC-8866654", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866654", "resource": "Reactome", "description": "E3 ubiquitin ligases ubiquitinate target proteins" }, { "id": "R-SSC-9943411", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943411", "resource": "Reactome", "description": "CHD1 and CHD2 subfamily" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZYX1-1", "protein_name": "Superkiller complex protein 8", "gene_name": "WDR61", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "RQRCSPARRSRGSGQSRAAVHPDRTAGPYRAFLLRSLPRRHDHTAHDDAIWSVAWGKNKKDSSETVISGSLDDLVKVWKWNDEKLDLQWTLEGHQLGVVSVDISHTGSIAASSSLDAHIRLWDLETGKQIKSIDAGPVDAWSLAFSPDSQFLATGSHVGKVNIFGVETGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHGSWVLNVAFCPDDTHFVSSSSDKSVKVWDAGTRTCVHTFFDHQDQVWGVKYNGSGSKIVSVGDDQEIHIYDCPV", "length": 336 }, "evidence": [ { "id": "A0A4X1USX2", "url": "https://omabrowser.org/oma/group/A0A4X1USX2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3H0B9-1", "protein_name": "Superkiller complex protein 8", "gene_name": "Wdr61", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTNQYSILFKQEQAHDDAIWSVAWGTNKKQNTETVVTGSLDDLVKVWKWHDEKLELQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHVYDCPI", "length": 305 }, "evidence": [ { "id": "A0A4X1USX2", "url": "https://omabrowser.org/oma/group/A0A4X1USX2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q32LN7-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTNQYSILFKQEQAHDDAIWSVAWGSNKKENSETVVTGSLDDLVKVWKWRDEKLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI", "length": 305 }, "evidence": [ { "id": "A0A4X1USX2", "url": "https://omabrowser.org/oma/group/A0A4X1USX2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4V7A0-1", "protein_name": "Superkiller complex protein 8", "gene_name": "Skic8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNQYSILFKQEQAHDDAIWSVAWETNKKENIETVVTGSLDDLVKVWKWRDERLELQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSPDSQHLATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHVYDCPI", "length": 305 }, "evidence": [ { "id": "A0A4X1USX2", "url": "https://omabrowser.org/oma/group/A0A4X1USX2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54S59-1", "protein_name": "Superkiller complex protein 8", "gene_name": "skic8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFQFGKKITGAHEDGIWCVKWQGDIIATGGMGTKVKTWHGNQPQFLTERKVFDKHILGVTSLDIDIGARYLATGGMDGTVRLFDLSTNTLHKTIDSGPLGCLKIGFLNSANNLVSVSESGNISIYSVETGEKLRSISNTNKQVLTMAISPNNEQIAVAGLDGTVLCYDVESGRRVSEIKAHGVPIRSLCFSSDSKTIFTGAEDSQIRLHDPNSSNPYIASLLGHSSFIFSLVASSNGDLLASSGSIDRKVCIWDIKTRKLDSSFTAHADQTWDLAFSPDSTKLVSVSDDCSIHSYALKQ", "length": 299 }, "evidence": [ { "id": "A0A4X1USX2", "url": "https://omabrowser.org/oma/group/A0A4X1USX2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9ERF3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "Skic8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTNQYSILFKQEQAHDDAIWSVAWETNKKENIETVVTGSLDDLVKVWKWRDERLELQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSPDSQYLATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHVYDCPI", "length": 305 }, "evidence": [ { "id": "A0A4X1USX2", "url": "https://omabrowser.org/oma/group/A0A4X1USX2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9GZS3-1", "protein_name": "Superkiller complex protein 8", "gene_name": "SKIC8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI", "length": 305 }, "evidence": [ { "id": "A0A4X1USX2", "url": "https://omabrowser.org/oma/group/A0A4X1USX2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9SZQ5-1", "protein_name": "WD repeat-containing protein VIP3", "gene_name": "VIP3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKLAGLKSIENAHEDSVWAATWVPATEDRPALLLTGSLDETVKLWRPDELDLVRTNTGHSLGVAALAAHPSGIIAASSSIDSFVRVFDVDTNATIAVLEAPPSEVWGMQFEPKGTILAVAGGSSASVKLWDTASWRLISTLSIPRPDAPKPSDKTSSKKFVLSVAWSPNGKRLACGSMDGTICVFDVDRSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHDAEGKTLLGSMSGHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFRPPGGTGVRAGRLASVSDDKSVSLYDYS", "length": 321 }, "evidence": [ { "id": "A0A4X1USX2", "url": "https://omabrowser.org/oma/group/A0A4X1USX2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XZ19-1", "protein_name": "IFT122/SMU1 beta-propeller domain-containing protein", "gene_name": 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"uniprot_id": "A0A4X1UPG4_PIG", "mass": { "chemical_mass": 42337.0, "monoisotopic_mass": 42337.0 }, "refseq": { "ac": "XP_003132120", "name": "zinc finger protein 385D isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132120" }, "gene_names": [ { "name": "ZNF385D", "type": "recommended", "evidence": [ { "id": "A0A4X1UPG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UPG4" } ] }, { "name": "ZNF385D", "type": "synonym", "evidence": [ { "id": "XP_003132120", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132120" } ] } ], "protein_names": [ { "name": "Zinc finger protein 385D", "type": "synonym", "evidence": [ { "id": "A0A4X1UPG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UPG4/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 385D isoform X4", "type": "synonym", "evidence": [ { "id": "XP_003132120", "database": "RefSeq", "url": 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"categories": [ "Gene Expression" ] }, { "id": "100520455", "url": "https://www.ncbi.nlm.nih.gov/gene/100520455", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003604", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003604", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051845", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051845", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520455", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520455", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RNIMYFX", "url": "https://omabrowser.org/oma/group/RNIMYFX/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1UPG4", "url": "https://www.orthodb.org/?gene=A0A4X1UPG4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23067", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23067", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23067:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23067:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12874", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12874", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132120", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132120", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZV79", "url": "https://www.uniprot.org/uniprotkb/A0A286ZV79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZV79-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZV79-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UPG4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UPG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UPG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UPG4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRNIMYFGGTCQSPALPALVRPPAPPLQPSLDIKPFLPFPLDTAAAVNLFPNFNAMDPIQKAVINHTFGVPLPHRRKQIISCNICQLRFNSDSQAAAHYKGTKHAKKLKALEAMKNKQKSVTAKDSAKTTFTSITTNTINTSSDKTDTTTGTPAISTTTTVEIRKSSVMTTEITSKVEKSPTTATGNSSCPSTETEEEKAKRLLYCSLCKVAVNSASQLEAHNSGTKHKTMLEARNGSGTIKAFPRAGVKGKGPVNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHKDRAAGKPPKPKYSPYNKLQKAAHPLGVKLVFSKEPSKPLAPRILPNPLAAAAAAAAVAVNSPFSLRTAPAATLFQASALPPALLRPAPGPIRTAHTPVLFAPY", "length": 395, "header": "tr|A0A4X1UPG4-1|A0A4X1UPG4_PIG Isoform 1 of Zinc finger protein 385D OS=Sus scrofa OX=9823 GN=ZNF385D PE=1 SV=1 CANONICAL=A0A4X1UPG4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZV79-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UPG4/entry#A0A286ZV79-1", "sequence": { "sequence": "MDPIQKAVINHTFGVPLPHRRKQIISCNICQLRFNSDSQAAAHYKGTKHAKKLKALEAMKNKQKSVTAKDSAKTTFTSITTNTINTSSDKTDTTTGTPAISTTTTVEIRKSSVMTTEITSKVEKSPTTATGNSSCPSTETEEEKAKRLLYCSLCKVAVNSASQLEAHNSGTKHKTMLEARNGSGTIKAFPRAGVKGKGPVNKGNTGLQNKTFHCEICDVHVNSETQLKQVGGTNSRSENRWGTPLPVKLVFSKEPSKPLAPRILPNPLAAAAAAAAVAVNSPFSLRTAPAATLFQASALPPALLRPAPGPIRTAHTPVLFAPY", "length": 323, "header": "tr|A0A286ZV79-1|A0A4X1UPG4_PIG Computationally mapped isoform of Zinc finger protein 385D OS=Sus scrofa OX=9823 GN=ZNF385D PE=1 SV=2 CANONICAL=A0A4X1UPG4-1" }, "locus": { "chromosome": "13", "start_pos": 8369143, "end_pos": 8237523, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056704.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056704.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035546.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035546.2" } ] } }, { "isoform_ac": "A0A4X1UPG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UPG4/entry#A0A4X1UPG4-1", "sequence": { "sequence": "MRNIMYFGGTCQSPALPALVRPPAPPLQPSLDIKPFLPFPLDTAAAVNLFPNFNAMDPIQKAVINHTFGVPLPHRRKQIISCNICQLRFNSDSQAAAHYKGTKHAKKLKALEAMKNKQKSVTAKDSAKTTFTSITTNTINTSSDKTDTTTGTPAISTTTTVEIRKSSVMTTEITSKVEKSPTTATGNSSCPSTETEEEKAKRLLYCSLCKVAVNSASQLEAHNSGTKHKTMLEARNGSGTIKAFPRAGVKGKGPVNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHKDRAAGKPPKPKYSPYNKLQKAAHPLGVKLVFSKEPSKPLAPRILPNPLAAAAAAAAVAVNSPFSLRTAPAATLFQASALPPALLRPAPGPIRTAHTPVLFAPY", "length": 395, "header": "tr|A0A4X1UPG4-1|A0A4X1UPG4_PIG Isoform 1 of Zinc finger protein 385D OS=Sus scrofa OX=9823 GN=ZNF385D PE=1 SV=1 CANONICAL=A0A4X1UPG4-1" }, "locus": { "chromosome": "13", "start_pos": 8568872, "end_pos": 8237523, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012274.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012274.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011957.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011957.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZV79", "url": "https://www.uniprot.org/uniprotkb/A0A286ZV79" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520455", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520455", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2UHY8-1", "protein_name": "Zinc finger protein 385D", "gene_name": "ZNF385D", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGALGRGAACWRMRSGRKEKAPGGKPRQLHENMKKPWSPDLPASNHSYNLAFTSIPDKDGEKELAADSTEEKREREKKQTNFTLCNVCNIQLNSAAQAQIHYNGKSHQKRLKQLSNGNLKSDNGGTCQSPALPALVRPPAPPLQPSLDIKPFLPFPLDTAAAVNLFPNFNAMDPIQKAVINHTFGVPLPHRRKQIISCNICQLRFNSDSQAAAHYKGTKHAKKLKALEAMKNKQKSVTTKDSAKTTFTSITTNTINTSSDKPDVTTGTPAISTTTTVEIRKSSVMTTEITSKVEKIPTTATSSTTCPSVETEEEKAKRLLYCSLCKVAVNSASQLEAHNSGTKHKTMLEARNGSGTIKAFPRAGVKGKGPVNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHKDRAAGKPPKPKYSPYNKLQKGTHPLGVKLVFSKEPSKPMAPRILPNPLAAAAAAAAVAVNSPFSLRTAPAATLFQTSALPPALLRPAPGPIRTTHTPVLFAPY", "length": 512 }, "evidence": [ { "id": "A0A4X1UPG4", "url": "https://omabrowser.org/oma/group/A0A4X1UPG4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9SEM3-1", "protein_name": "Zinc finger protein 385D", "gene_name": "ZNF385D", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPGPGRRAAAGRKMKGSAGGRREKPLGSPPAPPGPDSTCVQDGECEAEFPPDGFEEKPEKEKKQTNFTLCSVCNIQLNSTAQAQIHYNGKSHQKRLKQLSTGLVKNDTGGTCQSPALPALVRPPAPPLQPSLDIKPFLPFPLDTAAAVNLFPNFNAMDPIQKAVINHTFGVPLPHRRKQIISCNICQLRFNSDSQAAAHYKGTKHAKKLRALEATKTKQKPVTAKDSAKTTFTSITTNTINASSDKTDSTTGTPAISTTTVEIRKSSVMTTEITSKVEKSPTTASGNSSCPSTETEEEKAKRLLYCSLCKVAVNSASQLEAHNSGTKHKTMLEARNGSGAIKAFPRAGVKGKGPANKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHKDRAAGKPPKPKYSPYNKLQKAAHPLGVKLVFSKEPSKPLAPRLLPGPLAAAAAAVAVSSPFGLRAAPPALLPALPPALLRPAPGPMRSAHAPVLFAPY", "length": 490 }, "evidence": [ { "id": "A0A4X1UPG4", "url": "https://omabrowser.org/oma/group/A0A4X1UPG4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AXX3-1", "protein_name": "Zinc finger protein 385D", "gene_name": "Znf385d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRKIMYFGGTCQSPALPALIHPPAPPLQPSLDIKPFLPFPLDTAATVNLFPNFNAMDPIQKAVINHTFGFPLPHRKKQIISCNICQLRFNSDSQAAAHYKGTKHAKKLKALESMKNKQKSVTAKDSAKTTFTSITTNPITTSSDKTESTAGTQVIARSADMRKSSEVTTELTSNAEKSLTAAVAAGNNSSPPTETEEEKAKRLLYCSLCKVAVNSASQLEAHNSGTKHKTMLEARNGSGTIKAFPRAGMKGKGPVNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHKDRASGKPPKPKYSPYNKLQKAAHPLGVKLVFSKEPSKPLTPRILPNPLAAAAAAAAVAVNSPFSLRTAPAATLFQTSALPPALLRPAPGPIRTTHTPVLFSPY", "length": 395 }, "evidence": [ { "id": "A0A4X1UPG4", "url": "https://omabrowser.org/oma/group/A0A4X1UPG4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9H6B1-1", "protein_name": "Zinc finger protein 385D", "gene_name": "ZNF385D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRNIMYFGGTCQSPALPALVRPPAPPLQPSLDIKPFLPFPLDTAAAVNLFPNFNAMDPIQKAVINHTFGVPLPHRRKQIISCNICQLRFNSDSQAAAHYKGTKHAKKLKALEAMKNKQKSVTAKDSAKTTFTSITTNTINTSSDKTDGTAGTPAISTTTTVEIRKSSVMTTEITSKVEKSPTTATGNSSCPSTETEEEKAKRLLYCSLCKVAVNSASQLEAHNSGTKHKTMLEARNGSGTIKAFPRAGVKGKGPVNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHKDRAAGKPPKPKYSPYNKLQKTAHPLGVKLVFSKEPSKPLAPRILPNPLAAAAAAAAVAVSSPFSLRTAPAATLFQTSALPPALLRPAPGPIRTAHTPVLFAPY", "length": 395 }, "evidence": [ { "id": "A0A4X1UPG4", "url": "https://omabrowser.org/oma/group/A0A4X1UPG4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UPG4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UPG4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UPG4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UPG4" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UPG4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UPG4" } ], "pmid": "" }, { "name": "sequence-specific double-stranded DNA binding", "id": "GO:1990837", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990837", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UPG4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UPG4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 140, "end_pos": 142, "annotation": "n_glycosylation_sequon" }, { "start_pos": 187, "end_pos": 189, "annotation": "n_glycosylation_sequon" }, { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1UPG4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UPG4" }, { "id": "PS00028", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00028" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 82, "end_pos": 104, "start_aa": "Cys", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 140, "end_pos": 142 }, { "start_pos": 187, "end_pos": 189 }, { "start_pos": 236, "end_pos": 238 }, { "start_pos": 264, "end_pos": 266 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UTG5-1", "uniprot_ac": "A0A4X1UTG5", "uniprot_id": "A0A4X1UTG5_PIG", "mass": { "chemical_mass": 59438.0, "monoisotopic_mass": 59438.0 }, "refseq": { "ac": "XP_020931654", "name": "zinc finger protein Helios isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931654" }, "gene_names": [ { "name": "IKZF2", "type": "recommended", "evidence": [ { "id": "A0A4X1UTG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTG5" } ] }, { "name": "IKZF2", "type": "synonym", "evidence": [ { "id": "XP_020931654", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931654" } ] } ], "protein_names": [ { "name": "IKAROS family zinc finger 2", "type": "synonym", "evidence": [ { "id": "A0A4X1UTG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTG5/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein Helios isoform X6", "type": "synonym", "evidence": [ { "id": "XP_020931654", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931654" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UTG5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTG5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IKZF2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTG5", "locus": { "chromosome": "15", "start_pos": 115512179, "end_pos": 115677374, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016164", "url": "https://www.ensembl.org/id/ENSSSCG00000016164" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016164", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016164", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100737978", "url": "https://www.ncbi.nlm.nih.gov/gene/100737978", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028440", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028440", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24404", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24404", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24404:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24404:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47034", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47034", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47034:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47034:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9940951", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9940951", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020931654", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931654", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A4R2", "url": "https://www.uniprot.org/uniprotkb/A0A287A4R2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4R2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4R2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWM2", "url": "https://www.uniprot.org/uniprotkb/A0A287AWM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8Y5", "url": "https://www.uniprot.org/uniprotkb/A0A287B8Y5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8Y5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UTG5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UTG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTG5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UTH7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UTH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTH7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METEAIDGYLTCDNELSPEREHSNMAIDLTSSTPNGQHASPSHMTSTNSVKLEMQSDEECDGKPLSREDEIRGHDEGSSLEEPLIESSEVADNRKVQELQGEGGIRLPNGKLKCDVCGMVCIGPNVLMVHKRSHTGERPFHCNQCGASFTQKGNLLRHIKLHSGEKPFKCPFCSYACRRRDALTGHLRTHSVGKPHKCNYCGRSYKQRSSLEEHKERCHNYLQNVSMEAAGQVMSHHVPPMEDCKEQEPIMDNNISLVPFERPAVIEKLTGNMGKRKSSTPQKFVGEKLMRFSYPDIHFDMNLTYEKEAELMQSHMMDQAINNAITYLGAEALHPLMQHPPSTIAEVAPVISSAYSQVYHPNRIERPISRETSDSHENNMDGPISLIRPKSRPQEREASPSNSCLDSTDSESSHDDHQSYQGNPALNPKRKQSPAYMKEDVKALDATKAPKGSLKDIYKVFNGEGEQIRAFKCEHCRVLFLDHVMYTIHMGCHGYRDPLECNICGYRSQDRYEFSSHIVRGEHTFH", "length": 526, "header": "tr|A0A4X1UTG5-1|A0A4X1UTG5_PIG Isoform 1 of IKAROS family zinc finger 2 OS=Sus scrofa OX=9823 GN=IKZF2 PE=3 SV=1 CANONICAL=A0A4X1UTG5-1" }, "isoforms": [ { "isoform_ac": "A0A287A4R2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTG5/entry#A0A287A4R2-1", "sequence": { "sequence": "MHCTLTMETEAIDGYLTCDNELSPEREHSNMAIDLTSSTPNGQHASPSHMTSTNSVKLEMQSDEECDGKPLSREDEIRGHDEGSSLEEPLIESSEVADNRKVQELQGEGGIRLPNGERPFHCNQCGASFTQKGNLLRHIKLHSGEKPFKCPFCSYACRRRDALTGHLRTHSVPPMEDCKEQEPIMDNNISLVPFERPAVIEKLTGNMGKRKSSTPQKFVGEKLMRFSYPDIHFDMNLTYEKEAELMQSHMMDQAINNAITYLGAEALHPLMQHPPSTIAEVAPVISSAYSQVYHPNRIERPISRETSDSHENNMDGPISLIRPKSRPQEREASPSNSCLDSTDSESSHDDHQSYQGNPALNPKRKQSPAYMKEDVKALDATKAPKGSLKDIYKVFNGEGEQIRAFKCEHCRVLFLDHVMYTIHMGCHGYRDPLECNICGYRSQDRYEFSSHIVRGEHTFH", "length": 460, "header": "tr|A0A287A4R2-1|A0A4X1UTG5_PIG Computationally mapped isoform of IKAROS family zinc finger 2 OS=Sus scrofa OX=9823 GN=IKZF2 PE=3 SV=2 CANONICAL=A0A4X1UTG5-1" }, "locus": { "chromosome": "15", "start_pos": 115674055, "end_pos": 115519213, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036855.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036855.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038954.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038954.3" } ] } }, { "isoform_ac": "A0A287AWM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTG5/entry#A0A287AWM2-1", "sequence": { "sequence": "MHCTLTMETEAIDGYLTCDNELSPEREHSNMAIDLTSSTPNGQHASPSHMTSTNSVKLEMQSDEECDGKPLSREDEIRGHDEGSSLEEPLIESSEVADNRKVQELQGEGGIRLPNGERPFHCNQCGASFTQKGNLLRHIKLHSGEKPFKCPFCSYACRRRDALTGHLRTHSVGKPHKCNYCGRSYKQRSSLEEHKERCHNYLQNVSMEAAGQVMSHHVPPMEDCKEQEPIMDNNISLVPFERPAVIEKLTGNMGKRKSSTPQKFVGEKLMRFSYPDIHFDMNLTYEKEAELMQSHMMDQAINNAITYLGAEALHPLMQHPPSTIAEVAPVISSAYSQVYHPNRIERPISRETSDSHENNMDGPISLIRPKSRPQEREASPSNSCLDSTDSESSHDDHQSYQGNPALNPKRKQSPAYMKEDVKALDATKAPKGSLKDIYKVFNGEGEQIRAFKCEHCRVLFLDHVMYTIHMGCHGYRDPLECNICGYRSQDRYEFSSHIVRGEHTFH", "length": 506, "header": "tr|A0A287AWM2-1|A0A4X1UTG5_PIG Computationally mapped isoform of IKAROS family zinc finger 2 OS=Sus scrofa OX=9823 GN=IKZF2 PE=3 SV=2 CANONICAL=A0A4X1UTG5-1" }, "locus": { "chromosome": "15", "start_pos": 115674055, "end_pos": 115519213, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057564.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057564.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048267.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048267.2" } ] } }, { "isoform_ac": "A0A287B8Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTG5/entry#A0A287B8Y5-1", "sequence": { "sequence": "MHCTLTMETEAIDGYLTCDNELSPEREHSNMAIDLTSSTPNGQHASPSHMTSTNSVKLEMQSDEECDGKPLSREDEIRGHDEGSSLEEPLIESSEVADNRKVQELQGEGGIRLPNGERPFHCNQCGASFTQKGNLLRHIKLHSGEKPFKCPFCSYACRRRDALTGHLRTHSVGKPHKCNYCGRSYKQRSSLEEHKERCHNYLQNVSMEAAGQVMSHHGEKLMRFSYPDIHFDMNLTYEKEAELMQSHMMDQAINNAITYLGAEALHPLMQHPPSTIAEVAPVISSAYSQVYHPNRIERPISRETSDSHENNMDGPISLIRPKSRPQEREASPSNSCLDSTDSESSHDDHQSYQGNPALNPKRKQSPAYMKEDVKALDATKAPKGSLKDIYKVFNGEGEQIRAFKCEHCRVLFLDHVMYTIHMGCHGYRDPLECNICGYRSQDRYEFSSHIVRGEHTFH", "length": 458, "header": "tr|A0A287B8Y5-1|A0A4X1UTG5_PIG Computationally mapped isoform of IKAROS family zinc finger 2 OS=Sus scrofa OX=9823 GN=IKZF2 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"METEAIDGYLTCDNELSPEREHSNMAIDLTSSTPNGQHASPSHMTSTNSVKLEMQSDEECDGKPLSREDEIRGHDEGSSLEEPLIESSEVADNRKVQELQGEGGIRLPNGKLKCDVCGMVCIGPNVLMVHKRSHTGERPFHCNQCGASFTQKGNLLRHIKLHSGEKPFKCPFCSYACRRRDALTGHLRTHSVGKPHKCNYCGRSYKQRSSLEEHKERCHNYLQNVSMEAAGQVMSHHVPPMEDCKEQEPIMDNNISLVPFERPAVIEKLTGNMGKRKSSTPQKFVGEKLMRFSYPDIHFDMNLTYEKEAELMQSHMMDQAINNAITYLGAEALHPLMQHPPSTIAEVAPVISSAYSQVYHPNRIERPISRETSDSHENNMDGPISLIRPKSRPQEREASPSNSCLDSTDSESSHDDHQSYQGNPALNPKRKQSPAYMKEDVKALDATKAPKGSLKDIYKVFNGEGEQIRAFKCEHCRVLFLDHVMYTIHMGCHGYRDPLECNICGYRSQDRYEFSSHIVRGEHTFH", "length": 526, "header": "tr|A0A4X1UTG5-1|A0A4X1UTG5_PIG Isoform 1 of IKAROS family zinc finger 2 OS=Sus scrofa OX=9823 GN=IKZF2 PE=3 SV=1 CANONICAL=A0A4X1UTG5-1" }, "locus": { "chromosome": "15", "start_pos": 115673682, "end_pos": 115519213, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017599.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017599.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017122.5", "url": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF07258", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21672", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21672", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003125478", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125478", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A8L0", "url": "https://www.uniprot.org/uniprotkb/A0A287A8L0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8L0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8L0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UP09", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UP09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UP09-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UP09-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAVGSAAPYLHHPADSHSGRVSFLGTQLPPEVASMLRLLGDLDRGTFRRLLKLVVSSLQGEDCREAVQRLRAGADLPEERLGALIAGIHTLLQQALRLPPASLKPDAFKNQLQELCIPQDLVVDLASVVFGSQRPLLDSVARQQGAWLPHVVDFRWRVDVAISTSALTRSLQPSVLMQLKLSDGSAHLFEVPTAKFQELRFAVALLLKEMADLEKRCERKLQD", "length": 224, "header": "tr|A0A4X1UP09-1|A0A4X1UP09_PIG Isoform 1 of COMM domain-containing protein 5 OS=Sus scrofa OX=9823 GN=COMMD5 PE=1 SV=1 CANONICAL=A0A4X1UP09-1" }, "isoforms": [ { "isoform_ac": "A0A287A8L0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UP09/entry#A0A287A8L0-1", "sequence": { "sequence": "MHTLFNSVIQSVQQRGEALAAGSSPLGWLIKEQEAAMSAVGSAAPYLHHPADSHSGRVSFLGTQLPPEVASMLRLLGDLDRGTFRRLLKLVVSSLQGEDCREAVQRLRAGADLPEERLGALIAGIHTLLQQALRLPPASLKPDAFKNQLQELCIPQDLVVDLASVVFGSQRPLLDSVARQQGAWLPHVVDFRWRVDVAISTSALTRSLQPSVLMQLKLSDGSAHLFEVPTAKFQELRFAVALLLKEMADLEKRCERKLQD", "length": 260, "header": "tr|A0A287A8L0-1|A0A4X1UP09_PIG Computationally mapped isoform of COMM domain-containing protein 5 OS=Sus scrofa OX=9823 GN=COMMD5 PE=1 SV=2 CANONICAL=A0A4X1UP09-1" }, "locus": { "chromosome": "4", "start_pos": 181063, "end_pos": 178710, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046684.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046684.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040271.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040271.2" } ] } }, { "isoform_ac": "A0A4X1UP09-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UP09/entry#A0A4X1UP09-1", "sequence": { "sequence": "MSAVGSAAPYLHHPADSHSGRVSFLGTQLPPEVASMLRLLGDLDRGTFRRLLKLVVSSLQGEDCREAVQRLRAGADLPEERLGALIAGIHTLLQQALRLPPASLKPDAFKNQLQELCIPQDLVVDLASVVFGSQRPLLDSVARQQGAWLPHVVDFRWRVDVAISTSALTRSLQPSVLMQLKLSDGSAHLFEVPTAKFQELRFAVALLLKEMADLEKRCERKLQD", "length": 224, "header": "tr|A0A4X1UP09-1|A0A4X1UP09_PIG Isoform 1 of COMM domain-containing protein 5 OS=Sus scrofa OX=9823 GN=COMMD5 PE=1 SV=1 CANONICAL=A0A4X1UP09-1" }, "locus": { "chromosome": "4", "start_pos": 179381, "end_pos": 178710, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102910.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102910.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079809.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079809.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A8L0", "url": "https://www.uniprot.org/uniprotkb/A0A287A8L0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522132", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522132", "resource": "KEGG Pathway" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" } ], "orthologs": [ { "uniprot_canonical_ac": "G3IN17-1", "protein_name": "COMM domain-containing protein 5", "gene_name": "Commd5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSALGAAAPYLHHPADSHSGRVSFLGAQPSPQVAAVAQLMRDLDRSTFRKLLKLVVGALHGKDCREAVQHLGASANLSEERLAVLLAGTHTLLQQALRRPPASLKPEAFQDELQELGIPQDLIGDLASLVFGSQRPVLDSVAQQQASWLPHMSYFRWRVDVAISTSTQSRSLQPSVLMQLKLTDGSAHRFEVPIAKFQELRYSVALVLKEMAELEKKCERKLQD", "length": 224 }, "evidence": [ { "id": "A0A4X1UP09", "url": "https://omabrowser.org/oma/group/A0A4X1UP09/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P62919-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "Rpl8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN", "length": 257 }, "evidence": [ { "id": "A0A4X1UP09", "url": "https://omabrowser.org/oma/group/A0A4X1UP09/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q76NP9-1", "protein_name": "COMM domain-containing protein 5", "gene_name": "LSm-4", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSSTFRYNLLRSVKPYTSFTPQLTKSMLRVLIQVSVHYIESKKSSSEVLSLALNKLTNGGHEIPPNFCELFTMVFLTMQIFLRYPKGVVKHHELRKCLMDDLNLTEEYVEDICKVLLNHRDVLSKNFSDTKMDRVKMSKLQWRINISLSLNTVQIDKPTIVLHFKLQNKEYRTLELPLSMFQQVRYNIALLLNELQSLQSRLALK", "length": 205 }, "evidence": [ { "id": "A0A4X1UP09", "url": "https://omabrowser.org/oma/group/A0A4X1UP09/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q8R395-1", "protein_name": "COMM domain-containing protein 5", "gene_name": "Commd5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALGAPAPYLHHPTDSHSGRVSFLGSQPSAEVTAVAQLLKDLDRSTFRKLLKLVVGALHGKDCREAVQHLGASANLSEERLAVLLAGTHTLLQQALRLPPASLKPDAFQDELQELGIPQDMIGDLASLAFGSQRPLLDSVAQQQGSSLPRVSNFRWRVDVAISTSAQSRSLQPSVLMQLKLTDGSAHRFEVPIAKFQELRYSVALVLKEMAELERKCERKLQD", "length": 224 }, "evidence": [ { "id": "A0A4X1UP09", "url": "https://omabrowser.org/oma/group/A0A4X1UP09/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UP09", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UP09" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UP09", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UP09" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UP09", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UP09" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UP09", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UP09" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1UP09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UP09" }, { "id": "PS51269", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51269" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "COMM", "eco_id": "ECO_0000259", "start_pos": 151, "end_pos": 215, "start_aa": "His", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UZ44-1", "uniprot_ac": "A0A4X1UZ44", "uniprot_id": "A0A4X1UZ44_PIG", "mass": { "chemical_mass": 41655.0, "monoisotopic_mass": 41655.0 }, "refseq": { "ac": "XP_005671323", "name": "pantothenate kinase 1 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671323" }, "gene_names": [ { "name": "PANK1", "type": "recommended", "evidence": [ { "id": "A0A4X1UZ44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44" } ] }, { "name": "PANK1", "type": "synonym", "evidence": [ { "id": "XP_005671323", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671323" } ] } ], "protein_names": [ { "name": "pantothenate kinase", "type": "recommended", "evidence": [ { "id": "A0A4X1UZ44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44/entry#names_and_taxonomy" } ] }, { "name": "2.7.1.33", "type": "synonym", "evidence": [ { "id": "A0A4X1UZ44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44/entry#names_and_taxonomy" } ] }, { "name": "pantothenate kinase 1 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_005671323", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671323" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UZ44", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PANK1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44", "locus": { "chromosome": "14", "start_pos": 101409253, "end_pos": 101473945, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010456", "url": "https://www.ensembl.org/id/ENSSSCG00000010456" } ] } } ], "crossref": [ { "id": "A0A4X1UZ44", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1UZ44", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010456", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010456", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd24135", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd24135", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154650", "url": "https://www.ncbi.nlm.nih.gov/gene/100154650", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004567", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004567", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FPSCALH", "url": "https://omabrowser.org/oma/group/FPSCALH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1UZ44", "url": "https://www.orthodb.org/?gene=A0A4X1UZ44", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12280", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12280", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12280:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12280:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03630", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03630", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-196783", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196783", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005671323", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671323", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16373", "url": "https://www.rhea-db.org/rhea/16373", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287APU9", "url": "https://www.uniprot.org/uniprotkb/A0A287APU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APU9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UZ44", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UZ44-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1M042", "url": "https://www.uniprot.org/uniprotkb/A0A8D1M042", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1M042-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1M042-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLINGKKQTFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRTIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRESISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLELFKMTDDQ", "length": 373, "header": "tr|A0A4X1UZ44-1|A0A4X1UZ44_PIG Isoform 1 of pantothenate kinase OS=Sus scrofa OX=9823 GN=PANK1 PE=3 SV=1 CANONICAL=A0A4X1UZ44-1" }, "isoforms": [ { "isoform_ac": "A0A287APU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44/entry#A0A287APU9-1", "sequence": { "sequence": "MGDHGGHPELSAPQAPGTPVGAGVAALNGLLHNGFYPPSVQPPRLCGRGPAGGGDAAPQRLPLQPDLQSQPPPPQHDSPAKKCRLRRRMDSGRKNRPPFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRTIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRESISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLELFKMTDDQ", "length": 461, "header": "tr|A0A287APU9-1|A0A4X1UZ44_PIG Computationally mapped isoform of pantothenate kinase OS=Sus scrofa OX=9823 GN=PANK1 PE=3 SV=2 CANONICAL=A0A4X1UZ44-1" }, "locus": { "chromosome": "14", "start_pos": 101473821, "end_pos": 101411553, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046461.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046461.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046092.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046092.2" } ] } }, { "isoform_ac": "A0A4X1UZ44-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44/entry#A0A4X1UZ44-1", "sequence": { "sequence": "MKLINGKKQTFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRTIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRESISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLELFKMTDDQ", "length": 373, "header": "tr|A0A4X1UZ44-1|A0A4X1UZ44_PIG Isoform 1 of pantothenate kinase OS=Sus scrofa OX=9823 GN=PANK1 PE=3 SV=1 CANONICAL=A0A4X1UZ44-1" }, "locus": { "chromosome": "14", "start_pos": 101472652, "end_pos": 101411553, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049581.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049581.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053021.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053021.1" } ] } }, { "isoform_ac": "A0A8D1M042-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44/entry#A0A8D1M042-1", "sequence": { "sequence": "MKLINGKKQTFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRTIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSFGNMMSKEKRESISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLELFKMTDDQ", "length": 314, "header": "tr|A0A8D1M042-1|A0A4X1UZ44_PIG Computationally mapped isoform of pantothenate kinase OS=Sus scrofa OX=9823 GN=PANK1 PE=3 SV=1 CANONICAL=A0A4X1UZ44-1" }, "locus": { "chromosome": "14", "start_pos": 101472652, "end_pos": 101411553, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048585.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048585.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043565.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043565.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1M042", "url": "https://www.uniprot.org/uniprotkb/A0A8D1M042" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-196783", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196783", "resource": "Reactome", "description": "Coenzyme A biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZUU2-1", "protein_name": "pantothenate kinase", "gene_name": "Pank1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRGRRAPRPGSAEVPAAARDAETLRAGAASPARRAQLAEDVGTPTGGGEERRGRQPPAAARRLRESKPQGGSEDRRTADRDLQRGCLSRSPRTAPPVPGMGDRGAQHERAALQSPGAPEGAAAAVNGLLHNGFHPPAACSRDPPPPRFQLPPELQPQQQPLFAQHDSPAKKCRLRRRMDSGRKNRPPFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTMCGRKGNLHFIRFPTCAMHMFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALDMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRESISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLELFKMTDTQ", "length": 550 }, "evidence": [ { "id": "A0A4X1UZ44", "url": "https://omabrowser.org/oma/group/A0A4X1UZ44/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M2B4X4-1", "protein_name": "pantothenate kinase", "gene_name": "pank1a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDKAKSVMDQKGSSPCYQNGMHKPIRRQLSNGSCSPYSPTDDNYHHLHHDPQINGSPAKRCRLRMRLESARKNRPPFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRRYLTSNTAYGKTGIRDVHLELRNLTICGRTGNLHFIRFPTAAMHRFIQMGRDKHFSSLHTTLCATGGGAYKFENDFRTMADLELLKLDELDCLIQGLLYIDSVGFNGHPECYYFENPSDTQNCIKRPCRLDNLFPMLLVNIGSGVSILAVNSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMASKGDSTNVDKLVKDIYGGDYQRFGLQGSAVASSFGHMMSKEKRDSISKEDLARATLVTITNNIGSIARMCAVNEKIERVVFVGNFLRINTVSTKLLAYAMDFWSKGQLRALFLEHEGYFGAVGAFLELLKSSEDA", "length": 439 }, "evidence": [ { "id": "A0A4X1UZ44", "url": "https://omabrowser.org/oma/group/A0A4X1UZ44/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8K4K6-1", "protein_name": "Pantothenate kinase 1", "gene_name": "Pank1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRGRRAPRPGSTEVPAAARDADTLRARAASPVRGAQLAEDVGTPTGGGEERRGHQLPTAAPRLRESKPQGGSEDRGTADRDLQRGCQSRSPRTAPPVPGMGDRGAQHERAALQSPGAPEGAAAAVNGLLHNGFHPSAASSRDPPAPRFQLPSELQPQPLFAQHDSPAKKCRLRRRMDSGRKNRPPFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTMCGRKGNLHFIRFPTCAMHLFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALDMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRESISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLELFKMTDTQ", "length": 548 }, "evidence": [ { "id": "A0A4X1UZ44", "url": "https://omabrowser.org/oma/group/A0A4X1UZ44/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TE04-1", "protein_name": "Pantothenate kinase 1", "gene_name": "PANK1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLKLVGGGGGQDWACSVAGTSLGGEEAAFEVARPGDQGKAGGGSPGWGCAGIPDSAPGAGVLQAGAVGPARGGQGAEEVGESAGGGEERRVRHPQAPALRLLNRKPQGGSGEIKTPENDLQRGRLSRGPRTAPPAPGMGDRSGQQERSVPHSPGAPVGTSAAAVNGLLHNGFHPPPVQPPHVCSRGPVGGSDAAPQRLPLLPELQPQPLLPQHDSPAKKCRLRRRMDSGRKNRPPFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLELFKMTDDK", "length": 598 }, "evidence": [ { "id": "A0A4X1UZ44", "url": "https://omabrowser.org/oma/group/A0A4X1UZ44/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UZ44", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44" } ], "pmid": "" }, { "name": "pantothenate kinase activity", "id": "GO:0004594", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004594", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UZ44", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UZ44", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UZ44", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UZ44", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "coenzyme A biosynthetic process", "id": "GO:0015937", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015937", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UZ44", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UZ44" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16373", "name": "", "equation": "(R)-pantothenate + ATP = (R)-4'-phosphopantothenate + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16373", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16373" } ] }, { "id": "R-SSC-199203", "name": "PANK1/3 phosphorylate PanK", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-199203", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-199203" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 72, "end_pos": 74 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UTH5-1", "uniprot_ac": "A0A4X1UTH5", "uniprot_id": "A0A4X1UTH5_PIG", "mass": { "chemical_mass": 16358.0, "monoisotopic_mass": 16358.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Family with sequence similarity 72 member A", "type": "synonym", "evidence": [ { "id": "A0A4X1UTH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTH5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UTH5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTH5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTH5", "locus": {} } ], "crossref": [ { "id": "A0A4X1UTH5", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1UTH5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039370", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039370", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "106504942", "url": "https://www.ncbi.nlm.nih.gov/gene/106504942", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026768", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026768", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31841", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31841", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31841:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31841:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14976", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14976", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AQV9", "url": "https://www.uniprot.org/uniprotkb/A0A287AQV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UTH5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UTH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UTH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHW4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHW4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"MLVNSTAVSLASVAYITVEILIGLCAIVGNVLVIWVVKLNPSLKTTTFYFIVSLALADIAVGVLVMPLAIVVSLGVTIHFYSCLLMTCLLLIFTHASIMSLLAIAVDRYLRVKLTVRYRRVTTQRRIWLALGLCWLVSFLVGLTPMFGWNVKLTSEYHRNLTFLSCQFRSVMRMDYMVYFSFFTWIFIPLVVMCAIYLDIFYVIRHKLNHNFSGSKETGAFYGREFKTAKSLFLVLFLFALSWLPLSIINCIIYFKGEVPEVVLYLGILLSHANSMMNPIVYAYKIKKFKETYILILKACVICQPSNSLDPSTKKPSE", "length": 318, "header": "tr|F1SBN8-1|F1SBN8_PIG Isoform 1 of Adenosine receptor A3 OS=Sus scrofa OX=9823 GN=TMIGD3 PE=3 SV=2 CANONICAL=F1SBN8-1" }, "isoforms": [ { "isoform_ac": "A0A4X1T9V0-1", "url": "https://www.uniprot.org/uniprotkb/F1SBN8/entry#A0A4X1T9V0-1", "sequence": { "sequence": "MFGWNVKLTSEYHRNLTFLSCQFRSVMRMDYMVYFSFFTWIFIPLVVMCAIYLDIFYVIRHKLNHNFSGSKETGAFYGREFKTAKSLFLVLFLFALSWLPLSIINCIIYFKGEVPEVVLYLGILLSHANSMMNPIVYAYKIKKFKETYILILKACVICQPSNSLDPSTKKPSE", "length": 173, "header": "tr|A0A4X1T9V0-1|F1SBN8_PIG Computationally mapped isoform of Adenosine receptor A3 OS=Sus scrofa OX=9823 GN=TMIGD3 PE=3 SV=1 CANONICAL=F1SBN8-1" }, "locus": { "chromosome": "4", "start_pos": 108857266, "end_pos": 108856748, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062350.2", "url": "https://www.ensembl.org/id/ENSSSCT00000062350.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038245.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038245.1" } ] } }, { "isoform_ac": "A0A5G2QQ01-1", "url": "https://www.uniprot.org/uniprotkb/F1SBN8/entry#A0A5G2QQ01-1", "sequence": { "sequence": "MLVNSTAVSLASVAYITVEILIGLCAIVGNVLVIWVVKLNPSLKTTTFYFIVSLALADIAVGVLVMPLAIVVSLGVTIHFYSCLLMTCLLLIFTHASIMSLLAIAVDRYLRVKLTVRSRTPKPPGSVWSSQLKVHFLPAMGLFILLSLTVVSDAMVMDEKVKESFVLDTASAICHYDAHYKDHRKYWCRGYFRDYCNILAFTPNSTDRVVLQDTGNQLIITVSCLTKEDTGWYWCGIQRDFARDDMDFTELVVTDNRRALAKNFWSGKDLSGSKNRSCRASKVVHKADHSRTSILIVCILITGLGIISIISHLFNRRRSQRNRRVDNSLKALSSVLTPKDMAHPEQMG", "length": 348, "header": "tr|A0A5G2QQ01-1|F1SBN8_PIG Computationally mapped isoform of Adenosine receptor A3 OS=Sus scrofa OX=9823 GN=TMIGD3 PE=3 SV=1 CANONICAL=F1SBN8-1" }, "locus": { "chromosome": "4", "start_pos": 108871042, "end_pos": 108854623, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079834.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079834.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066800.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066800.1" } ] } }, { "isoform_ac": "A0A8D0SJ97-1", "url": "https://www.uniprot.org/uniprotkb/F1SBN8/entry#A0A8D0SJ97-1", "sequence": { "sequence": "MGLFILLSLTVVSDAMVMDEKVKESFVLDTASAICHYDAHYKDHRKYWCRGYFRDYCNILAFTPNSTDRVVLQDTGNQLIITVSCLTKEDTGWYWCGIQRDFARDDMDFTELVVTDNRRALAKNFWSGKDLSGSKNRSCRASKVVHKADHSRTSILIVCILITGLGIISIISHLFNRRRSQRNRRGKGLARSQKSNQASSAVPTPL", "length": 206, "header": "tr|A0A8D0SJ97-1|F1SBN8_PIG Computationally mapped isoform of Adenosine receptor A3 OS=Sus scrofa OX=9823 GN=TMIGD3 PE=3 SV=1 CANONICAL=F1SBN8-1" }, "locus": { "chromosome": "4", "start_pos": 108869617, "end_pos": 108863560, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007435.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007435.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007240.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007240.2" } ] } }, { "isoform_ac": "A0A8D1UK30-1", "url": "https://www.uniprot.org/uniprotkb/F1SBN8/entry#A0A8D1UK30-1", "sequence": { "sequence": "MGLFILLSLTVVSDAMVMDEKVKESFVLDTASAICHYDAHYKDHRKYWCRGYFRDYCNILAFTPNSTDRVVLQDTGNQLIITVSCLTKEDTGWYWCGIQRDFARDDMDFTELVVTDNRRALAKNFWSGKDLSGSKNRSCRASKVVHKADHSRTSILIVCILITGLGIISIISHLFNRRRSQRNRRGKGLARSQKSNQASSAVPTPLVSSLLGSSVLGPGPTAPWSLGLPISTQRTFIPKRGVDLPTFPRARGRQAQILKAPGG", "length": 263, "header": "tr|A0A8D1UK30-1|F1SBN8_PIG Computationally mapped isoform of Adenosine receptor A3 OS=Sus scrofa OX=9823 GN=TMIGD3 PE=3 SV=1 CANONICAL=F1SBN8-1" }, "locus": { "chromosome": "4", "start_pos": 108869788, "end_pos": 108863560, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069134.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069134.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070678.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070678.1" } ] } }, { "isoform_ac": "A0A8W4FC84-1", "url": "https://www.uniprot.org/uniprotkb/F1SBN8/entry#A0A8W4FC84-1", "sequence": { "sequence": "MGLFILLSLTVVSDAMVMDEKVKESFVLDTASAICHYDAHYKDHRKYWCRGYFRDYCNILAFTPNSTDRVVLQDTGNQLIITVSCLTKEDTGWYWCGIQRDFARDDMDFTELVVTDNRRALAKNFWSGKDLSGSKNRSCRASKVVHKADHSRTSILIVCILITGLGIISIISHLFNRRRSQRNRRGKGLARSQKSNQASSAVPTPLTTL", "length": 209, "header": "tr|A0A8W4FC84-1|F1SBN8_PIG Computationally mapped isoform of Adenosine receptor A3 OS=Sus scrofa OX=9823 GN=TMIGD3 PE=3 SV=1 CANONICAL=F1SBN8-1" }, "locus": { "chromosome": "4", "start_pos": 108870981, "end_pos": 108863560, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097885.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097885.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075907.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075907.1" } ] } }, { "isoform_ac": "F1SBN8-1", "url": "https://www.uniprot.org/uniprotkb/F1SBN8/entry#F1SBN8-1", "sequence": { "sequence": "MLVNSTAVSLASVAYITVEILIGLCAIVGNVLVIWVVKLNPSLKTTTFYFIVSLALADIAVGVLVMPLAIVVSLGVTIHFYSCLLMTCLLLIFTHASIMSLLAIAVDRYLRVKLTVRYRRVTTQRRIWLALGLCWLVSFLVGLTPMFGWNVKLTSEYHRNLTFLSCQFRSVMRMDYMVYFSFFTWIFIPLVVMCAIYLDIFYVIRHKLNHNFSGSKETGAFYGREFKTAKSLFLVLFLFALSWLPLSIINCIIYFKGEVPEVVLYLGILLSHANSMMNPIVYAYKIKKFKETYILILKACVICQPSNSLDPSTKKPSE", "length": 318, "header": "tr|F1SBN8-1|F1SBN8_PIG Isoform 1 of Adenosine receptor A3 OS=Sus scrofa OX=9823 GN=TMIGD3 PE=3 SV=2 CANONICAL=F1SBN8-1" }, "locus": { "chromosome": "4", "start_pos": 108857266, "end_pos": 108854623, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007436.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007436.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007241.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007241.2" 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PE=4 SV=4 CANONICAL=F1SF20-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUH6-1", "url": "https://www.uniprot.org/uniprotkb/F1SF20/entry#A0A5G2QUH6-1", "sequence": { "sequence": "MVAGARGGCATAGAARRGFLALLLAVSAPLWLQAEKLGDGCGHIVTYKDSGTMTSKNYPGTYPNHTVCEKTITVPKGKRLILRLGDLDIESQTCASDYLLFTSSSDQYGPYCGSMTVPKELLLDTNEVTVRFESGSHISGRGFLLTYASSDHPDLITCLERANHYLKTEYSKFCPAGCRDIAGDISGNVVDGYRDTSLLCKAAIHAGIIADELGGQISVLLRKGLSRYEGILANGVLSRDGSLSDKRFLFTSNGCSTSLSLEPERQIRASSSWEWINETGDQVRWSPGQARLQDQGPSWASGDRSKNHKQREWLRIDLGERKKITGIRTTGSTQSNFNFYVKSFVMNFKDNDSKWKTYKGIGNNEEKVFQGNSNFRDPVRNNFIPPIVARYIRVIPHTWHQRIALKVELLGCQITPSNDSLVWPRTSSNTVGSTKREDETISQPIPSEEMTKGLNITTVVIPLVLLALLIAGVGTFAILRKRKKKGNPYGSAKTQKTDCWKQIKYPFARHQSAEFTISYDHEKEMTQKLDLITSDMAD", "length": 538, "header": "tr|A0A5G2QUH6-1|F1SF20_PIG Computationally mapped isoform of Discoidin, CUB and LCCL domain containing 1 OS=Sus scrofa OX=9823 GN=DCBLD1 PE=4 SV=1 CANONICAL=F1SF20-1" }, "locus": { "chromosome": "1", "start_pos": 44373594, "end_pos": 44276678, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079185.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079185.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067809.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067809.1" } ] } }, { "isoform_ac": "F1SF20-1", "url": "https://www.uniprot.org/uniprotkb/F1SF20/entry#F1SF20-1", "sequence": { "sequence": "MVAGARGGCATAGAARRGFLALLLAVSAPLWLQAEKLGDGCGHIVTYKDSGTMTSKNYPGTYPNHTVCEKTITVPKGKRLILRLGDLDIESQTCASDYLLFTSSSDQYGPYCGSMTVPKELLLDTNEVTVRFESGSHISGRGFLLTYASSDHPDLITCLERANHYLKTEYSKFCPAGCRDIAGDISGNVVDGYRDTSLLCKAAIHAGIIADELGGQISVLLRKGLSRYEGILANGVLSRDGSLSDKRFLFTSNGCSTSLSLEPERQIRASSSWEWINETGDQVRWSPGQARLQDQGPSWASGDRSKNHKQREWLRIDLGERKKITGIRTTGSTQSNFNFYVKSFVMNFKDNDSKWKTYKGIGNNEEKVFQGNSNFRDPVRNNFIPPIVARYIRVIPHTWHQRIALKVELLGCQITPSRTQGNDSLVWPRTSSNTVGSTKREDETISQPIPSEEMTKGLNITTVVIPLVLLALLIAGVGTFAILRKRKKKGNPYGSAKTQKTDCWKQIKYPFARHQSAEFTISYDHEKEMTQKLDLITSDMADYQQPLMIGTGTVTRKGSTFRPMDTEAEAAGPGAESRSHYDCPLPASRHQYALPLTHPEPEYATPIVERHLARAHTFSARCGPRGPGPGPAHKHSLSSGAFSSDAGYQQPQSPTGPGYDRPTGGGLAVGRAPPDYQKPQIGPATSAAYLAPRDCLRPLNPTAMTALL", "length": 708, "header": "tr|F1SF20-1|F1SF20_PIG Isoform 1 of Discoidin, CUB and LCCL domain containing 1 OS=Sus scrofa OX=9823 GN=DCBLD1 PE=4 SV=4 CANONICAL=F1SF20-1" }, "locus": { "chromosome": "1", "start_pos": 44373594, "end_pos": 44302666, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004702.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004702.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004594.4", "url": "https://www.ensembl.org/id/ENSSSCP00000004594.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUH6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUH6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156679", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156679", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SF20", "url": "https://www.uniprot.org/uniprotkb/F1SF20" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SF20", "url": "https://www.uniprot.org/uniprotkb/F1SF20" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "F1SF20", "url": "https://www.uniprot.org/uniprotkb/F1SF20" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 351, "end_pos": 353, "annotation": "n_glycosylation_sequon" }, { "start_pos": 422, "end_pos": 424, "annotation": "n_glycosylation_sequon" }, { "start_pos": 459, "end_pos": 461, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SF20-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 708, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SF20-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SF20" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SF20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF20" }, { "id": "PS01180", "database": "PROSITE", "url": "https://prosite.expasy.org/PS01180" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CUB", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 150, "start_aa": "Cys", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SF20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF20" }, { "id": "PS50022", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50022" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F5/8 type C", "eco_id": "ECO_0000259", "start_pos": 255, "end_pos": 412, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SF20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF20" }, { "id": "PS50820", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50820" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LCCL", "eco_id": "ECO_0000259", "start_pos": 152, "end_pos": 248, "start_aa": "His", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 277, "end_pos": 279 }, { "start_pos": 351, "end_pos": 353 }, { "start_pos": 422, "end_pos": 424 }, { "start_pos": 459, "end_pos": 461 }, { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SBE3-1", "uniprot_ac": "F1SBE3", "uniprot_id": "F1SBE3_PIG", "mass": { "chemical_mass": 65411.0, "monoisotopic_mass": 65411.0 }, "refseq": {}, "gene_names": [ { "name": "SLC9A8", "type": "recommended", "evidence": [ { "id": "F1SBE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBE3" } ] } ], "protein_names": [ { "name": "Sodium/hydrogen exchanger", "type": "recommended", "evidence": [ { "id": "F1SBE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBE3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBE3", "url": "https://www.uniprot.org/uniprotkb/F1SBE3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC9A8", "url": "https://www.uniprot.org/uniprotkb/F1SBE3", "locus": { "chromosome": "17", "start_pos": 51477220, "end_pos": 51401621, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007466", "url": "https://www.ensembl.org/id/ENSSSCG00000007466" } ] } } ], "crossref": [ { "id": "F1SBE3", "url": "https://alphafold.ebi.ac.uk/entry/F1SBE3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007466", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007466", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004709", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004709", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10110", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10110", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10110:SF191", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10110:SF191", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00999", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00999", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-425986", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-425986", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QVB3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBE3", "url": "https://www.uniprot.org/uniprotkb/F1SBE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBE3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBE3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEKMAEEDRFPNTTHEGFNVTLHTTPVVTTKLVLPTPAKPILPVQTGEQAQQEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGIFMGAVIKIIEFKKLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVGGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTNTAEGLTRKNMSDVSGWQTFLQALGYFLKMFFGSAALGTLTGLISALVLKHIDLRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFLGLSIFSFPHKFEISFVIWCIVLVLFGRAVNIFPLSYLLNFFRDHKITPKMMFIMWFSGLRGAIPYALSLHLDLEPMEKRQLIGTTTIIIVLFTILLLGGSTMPLIRLVDIEDAKARRRNRKDVNLSKTEKMGNTVESEHLSELTEEEYEAHYVRRQDLKGFLWLDAKYLNPFFTRRLTQEDLHHGRIQMKTLTNKWYEEVRQGPSGSEDDEQELL", "length": 581, "header": "tr|F1SBE3-1|F1SBE3_PIG Isoform 1 of Sodium/hydrogen exchanger OS=Sus scrofa OX=9823 GN=SLC9A8 PE=3 SV=4 CANONICAL=F1SBE3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVB3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBE3/entry#A0A5G2QVB3-1", "sequence": { "sequence": "MGEKMAEEDRFPNTTHEGFNVTLHTTPVVTTKLVLPTPAKPILPVQTGEQAQQEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGIFMGAVIKIIEFKKLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVGGGIYFLGQGFLCVCVCVFVCFILQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTNTAEGLTRKNMSDVSGWQTFLQALGYFLKMFFGSAALGTLTGLISALVLKHIDLRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFLGLSIFSFPHKFEISFVIWCIVLVLFGRAVNIFPLSYLLNFFRDHKITPKMMFIMWFSGLRGAIPYALSLHLDLEPMEKRQLIGTTTIIIVLFTILLLGGSTMPLIRLVDIEDAKARRRNRKDVNLSKTEKMGNTVESEHLSELTEEEYEAHYVRRQDLKGFLWLDAKYLNPFFTRRLTQEDLHHGRIQMKTLTNKWYEEVRQGPSGSEDDEQELL", "length": 597, "header": "tr|A0A5G2QVB3-1|F1SBE3_PIG Computationally mapped isoform of Sodium/hydrogen exchanger OS=Sus scrofa OX=9823 GN=SLC9A8 PE=3 SV=1 CANONICAL=F1SBE3-1" }, "locus": { "chromosome": "17", "start_pos": 51471745, "end_pos": 51401621, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068856.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068856.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062117.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062117.1" } ] } }, { "isoform_ac": "F1SBE3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBE3/entry#F1SBE3-1", "sequence": { "sequence": "MGEKMAEEDRFPNTTHEGFNVTLHTTPVVTTKLVLPTPAKPILPVQTGEQAQQEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGIFMGAVIKIIEFKKLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVGGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTNTAEGLTRKNMSDVSGWQTFLQALGYFLKMFFGSAALGTLTGLISALVLKHIDLRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFLGLSIFSFPHKFEISFVIWCIVLVLFGRAVNIFPLSYLLNFFRDHKITPKMMFIMWFSGLRGAIPYALSLHLDLEPMEKRQLIGTTTIIIVLFTILLLGGSTMPLIRLVDIEDAKARRRNRKDVNLSKTEKMGNTVESEHLSELTEEEYEAHYVRRQDLKGFLWLDAKYLNPFFTRRLTQEDLHHGRIQMKTLTNKWYEEVRQGPSGSEDDEQELL", "length": 581, "header": "tr|F1SBE3-1|F1SBE3_PIG Isoform 1 of Sodium/hydrogen exchanger OS=Sus scrofa OX=9823 GN=SLC9A8 PE=3 SV=4 CANONICAL=F1SBE3-1" }, "locus": { "chromosome": "17", "start_pos": 51471745, "end_pos": 51401621, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008170.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008170.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007953.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007953.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 37, "start_aa": "Thr", "end_pos": 37, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr37", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVB3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVB3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-425986", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-425986", "resource": "Reactome", "description": "Sodium/Proton exchangers" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "sodium:proton antiporter activity", "id": "GO:0015385", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015385", "evidence": [ { "database": "UniProtKB", "id": "F1SBE3", "url": "https://www.uniprot.org/uniprotkb/F1SBE3" } ], "pmid": "" }, { "name": "potassium:proton antiporter activity", "id": "GO:0015386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015386", "evidence": [ { "database": "UniProtKB", "id": "F1SBE3", "url": "https://www.uniprot.org/uniprotkb/F1SBE3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SBE3", "url": "https://www.uniprot.org/uniprotkb/F1SBE3" } ], "pmid": "" }, { "name": "trans-Golgi network membrane", "id": "GO:0032588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032588", "evidence": [ { "database": "UniProtKB", "id": "F1SBE3", "url": "https://www.uniprot.org/uniprotkb/F1SBE3" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1SBE3", "url": "https://www.uniprot.org/uniprotkb/F1SBE3" } ], "pmid": "" }, { "name": "acrosomal vesicle", "id": "GO:0001669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001669", "evidence": [ { "database": "UniProtKB", "id": "F1SBE3", "url": "https://www.uniprot.org/uniprotkb/F1SBE3" } ], "pmid": "" }, { "name": "multivesicular body membrane", "id": "GO:0032585", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032585", "evidence": [ { "database": "UniProtKB", "id": "F1SBE3", "url": "https://www.uniprot.org/uniprotkb/F1SBE3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "acrosome assembly", "id": "GO:0001675", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001675", "evidence": [ { "database": "UniProtKB", "id": "F1SBE3", "url": "https://www.uniprot.org/uniprotkb/F1SBE3" } ], "pmid": "" }, { "name": "regulation of Golgi lumen acidification", "id": "GO:1905526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905526", "evidence": [ { "database": "UniProtKB", "id": "F1SBE3", "url": "https://www.uniprot.org/uniprotkb/F1SBE3" } ], "pmid": "" }, { "name": "regulation of intracellular pH", "id": "GO:0051453", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051453", "evidence": [ { "database": "UniProtKB", "id": "F1SBE3", "url": "https://www.uniprot.org/uniprotkb/F1SBE3" } ], "pmid": "" }, { "name": "potassium ion transmembrane transport", "id": "GO:0071805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071805", "evidence": [ { "database": "UniProtKB", "id": "F1SBE3", "url": "https://www.uniprot.org/uniprotkb/F1SBE3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 13, "end_pos": 15, "annotation": "n_glycosylation_sequon" }, { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 20, "end_pos": 22, "annotation": "n_glycosylation_sequon" }, { "start_pos": 247, "end_pos": 249, "annotation": "n_glycosylation_sequon" }, { "start_pos": 338, "end_pos": 340, "annotation": "n_glycosylation_sequon" }, { "start_pos": 490, "end_pos": 492, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBE3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 581, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBE3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBE3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBE3" }, { "id": "PF00999", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00999" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cation/H+ exchanger transmembrane", "eco_id": "ECO_0000259", "start_pos": 71, "end_pos": 471, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 37 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 13, "end_pos": 15 }, { "start_pos": 186, "end_pos": 188 }, { "start_pos": 20, "end_pos": 22 }, { "start_pos": 247, "end_pos": 249 }, { "start_pos": 338, "end_pos": 340 }, { "start_pos": 490, "end_pos": 492 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { 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"field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SEE2-1", "uniprot_ac": "F1SEE2", "uniprot_id": "F1SEE2_PIG", "mass": { "chemical_mass": 42848.0, "monoisotopic_mass": 42848.0 }, "refseq": {}, "gene_names": [ { "name": "GPN1", "type": "recommended", "evidence": [ { "id": "F1SEE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEE2" } ] } ], "protein_names": [ { "name": "GPN-loop GTPase", "type": "recommended", "evidence": [ { "id": "F1SEE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEE2/entry#names_and_taxonomy" } ] }, { "name": "3.6.5.-", "type": "synonym", "evidence": [ { "id": "F1SEE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEE2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Small GTPase involved in the correct assembly of RNA polymerase II (RNAPII) complex, ensuring proper nuclear import of RNAPII. In vitro, exhibits a chaperone-like activity and a chaperone substrate protein can stimulate its GTPase activity. It is proposed to bind exposed hydrophobic peptide regions of newly synthesized RNAP II subunit, triggering the opening of a hydrophobic pocket in its GDP-bound state. This interaction likely traps exposed hydrophobic regions, preventing misassembly and providing a time window for association with the cognate RNAP II subunit. Peptide binding promotes GDP release, and increasing GTP affinity to facilitate GTP rebinding. Subsequent GTP hydrolysis would then lead to the release of the bound RNAP II subunit to enable association with cognate subunits and RNAP II assembly.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCA2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA2#function" }, { "database": "UniProtKB", "id": "RU365059", "url": "https://www.uniprot.org/uniprotkb/RU365059#function" }, { "database": "UniProtKB", "id": "A0A5G2QJV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJV7#function" }, { "database": "UniProtKB", "id": "F1SEE2", "url": "https://www.uniprot.org/uniprotkb/F1SEE2#function" }, { "database": "UniProtKB", "id": "A0A5G2QXW2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXW2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEE2", "url": "https://www.uniprot.org/uniprotkb/F1SEE2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GPN1", "url": "https://www.uniprot.org/uniprotkb/F1SEE2", "locus": { "chromosome": "3", "start_pos": 111537737, "end_pos": 111572692, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008546", "url": "https://www.ensembl.org/id/ENSSSCG00000008546" } ] } } ], "crossref": [ { "id": "F1SEE2", "url": "https://alphafold.ebi.ac.uk/entry/F1SEE2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008546", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008546", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17870", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17870", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030230", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030230", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21231", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21231", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21231:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21231:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03029", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03029", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QCA2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCA2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXW2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXW2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXW2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXW2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEE2", "url": "https://www.uniprot.org/uniprotkb/F1SEE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEE2-1", "url": "https://www.uniprot.org/uniprotkb/F1SEE2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TRLYGRVGGARSKMAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDEFFVQVASAAEEYEREYRPEYERLKKSLANAQSQQQKEQLERLQKDMGSIALDTGTATGSSSPMLDPSDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQYWKRNK", "length": 386, "header": "tr|F1SEE2-1|F1SEE2_PIG Isoform 1 of GPN-loop GTPase OS=Sus scrofa OX=9823 GN=GPN1 PE=3 SV=5 CANONICAL=F1SEE2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCA2-1", "url": "https://www.uniprot.org/uniprotkb/F1SEE2/entry#A0A5G2QCA2-1", "sequence": { "sequence": "GKLPTRYDRTEIVLSANSSKRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDEFFVQVASAAEEYEREYRPEYERLKKSLANAQSQQQKEQLERLQKDMGSIALDTGTATGSSSPMLDPSDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQYWKRNK", "length": 356, "header": "tr|A0A5G2QCA2-1|F1SEE2_PIG Computationally mapped isoform of GPN-loop GTPase OS=Sus scrofa OX=9823 GN=GPN1 PE=3 SV=1 CANONICAL=F1SEE2-1" }, "locus": { "chromosome": "3", "start_pos": 111565399, "end_pos": 111542571, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092412.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092412.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076639.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076639.1" } ] } }, { "isoform_ac": "A0A5G2QJV7-1", "url": "https://www.uniprot.org/uniprotkb/F1SEE2/entry#A0A5G2QJV7-1", "sequence": { "sequence": "MKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDEFFVQVASAAEEYEREYRPEYERLKKSLANAQSQQQKEQLERLQKDMGSIALDTGTATGSSSPMLDPSDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQYWKRNK", "length": 294, "header": "tr|A0A5G2QJV7-1|F1SEE2_PIG Computationally mapped isoform of GPN-loop GTPase OS=Sus scrofa OX=9823 GN=GPN1 PE=3 SV=1 CANONICAL=F1SEE2-1" }, "locus": { "chromosome": "3", "start_pos": 111561339, "end_pos": 111542571, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087924.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087924.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064248.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064248.1" } ] } }, { "isoform_ac": "A0A5G2QXW2-1", "url": "https://www.uniprot.org/uniprotkb/F1SEE2/entry#A0A5G2QXW2-1", "sequence": { "sequence": "MKFPFLPILVMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDEFFVQVASAAEEYEREYRPEYERLKKSLANAQSQQQKEQLERLQKDMGSIALDTGTATGSSSPMLDPSDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQYWKRNK", "length": 278, "header": "tr|A0A5G2QXW2-1|F1SEE2_PIG Computationally mapped isoform of GPN-loop GTPase OS=Sus scrofa OX=9823 GN=GPN1 PE=3 SV=1 CANONICAL=F1SEE2-1" }, "locus": { "chromosome": "3", "start_pos": 111564161, "end_pos": 111542571, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095778.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095778.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075812.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075812.1" } ] } }, { "isoform_ac": "F1SEE2-1", "url": "https://www.uniprot.org/uniprotkb/F1SEE2/entry#F1SEE2-1", "sequence": { "sequence": "TRLYGRVGGARSKMAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTIVVYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDEFFVQVASAAEEYEREYRPEYERLKKSLANAQSQQQKEQLERLQKDMGSIALDTGTATGSSSPMLDPSDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQYWKRNK", "length": 386, "header": "tr|F1SEE2-1|F1SEE2_PIG Isoform 1 of GPN-loop GTPase OS=Sus scrofa OX=9823 GN=GPN1 PE=3 SV=5 CANONICAL=F1SEE2-1" }, "locus": { "chromosome": "3", "start_pos": 111565066, "end_pos": 111542571, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009351.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009351.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009111.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009111.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXW2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXW2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F1SEE2", "url": "https://www.uniprot.org/uniprotkb/F1SEE2" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1SEE2", "url": "https://www.uniprot.org/uniprotkb/F1SEE2" } ], "pmid": "" }, { "name": "RNA polymerase II complex binding", "id": "GO:0000993", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000993", "evidence": [ { "database": "UniProtKB", "id": "F1SEE2", "url": "https://www.uniprot.org/uniprotkb/F1SEE2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SEE2", "url": "https://www.uniprot.org/uniprotkb/F1SEE2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SEE2", "url": "https://www.uniprot.org/uniprotkb/F1SEE2" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SEE2", "url": "https://www.uniprot.org/uniprotkb/F1SEE2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SEE2", "url": "https://www.uniprot.org/uniprotkb/F1SEE2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein import into nucleus", "id": "GO:0006606", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006606", "evidence": [ { "database": "UniProtKB", "id": "F1SEE2", "url": "https://www.uniprot.org/uniprotkb/F1SEE2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 235, "end_pos": 237, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SEE2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 386, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SEE2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SEE2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SEE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEE2" }, { "id": "SM00382", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00382" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AAA+ ATPase", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 195, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 127, "end_pos": 129 }, { "start_pos": 202, "end_pos": 204 }, { "start_pos": 235, "end_pos": 237 } ] }, "class_list": [], "section_stats": [ { "table_id": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S903-1", "uniprot_ac": "F1S903", "uniprot_id": "F1S903_PIG", "mass": { "chemical_mass": 68590.0, "monoisotopic_mass": 68590.0 }, "refseq": {}, "gene_names": [ { "name": "CRTC1", "type": "recommended", "evidence": [ { "id": "F1S903", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S903" } ] } ], "protein_names": [ { "name": "CREB regulated transcription coactivator 1", "type": "synonym", "evidence": [ { "id": "F1S903", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S903/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S903", "url": "https://www.uniprot.org/uniprotkb/F1S903" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CRTC1", "url": "https://www.uniprot.org/uniprotkb/F1S903", "locus": { "chromosome": "2", "start_pos": 59069335, "end_pos": 59157176, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013915", "url": "https://www.ensembl.org/id/ENSSSCG00000013915" } ] } } ], "crossref": [ { "id": "F1S903", "url": "https://alphafold.ebi.ac.uk/entry/F1S903", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013915", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013915", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR024783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024784", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024784", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024785", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024785", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13589", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13589", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13589:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13589:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12884", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12884", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12885", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12885", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12886", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12886", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QNF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNF4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R069", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R069", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R069-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R069-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S903", "url": "https://www.uniprot.org/uniprotkb/F1S903", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S903-1", "url": "https://www.uniprot.org/uniprotkb/F1S903-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQLQKSQYLQLGPSRGQYYGGSLPNVNQIGSGTVDLPFQPSGFLGEALAAAPVSLTPFQSSGLDTSRTTRHHGLVDRVYRERGRLGSPHRRPLSVDKHGRQSDSCPYGTVYLSPPADTSWRRTNSDSALHQSTMTPTQPEPFTGGSQDTHQKRVLLLTVPGMEETTSETDKNLSKQAWDTKKTGSRPKSCEVPGINIFPSADQENTTALIPATHNTGGSLPDLTNIHFPSPLPTPLDPEEPTFPALSSSSSTGNLAANLTHLGIGSAGQGMSTPGSSPQHRPLSLSTEARRQQAQQVSPTLSPLSPITQAVAMDALSLEQQLPYAFFTQAGSQQPPPPQPQPPPPPPPASQQQPPPPPQVPVGPPGGSLMPSASLTRGPQLPPLAVTVPSSLPQSPPESAGQPPMGIDIASAPALQQYRTSAGSPANQSPTSPVSNQGFSPGSSPQHSSTLGGVFGDSYYEQQMAARQANALSHQLEQFNMMENAISSSSLYSPGSTLNYSQAAMMGLSGSPGSLPDTQQLGYPSHSSIPNIILTVTGESPPSLSKELTSTLAGVGDVSFDSDNQFPLDELKIDPLTLDGLHMLNDPDMVLADPATEDTFRMDRL", "length": 647, "header": "tr|F1S903-1|F1S903_PIG Isoform 1 of CREB regulated transcription coactivator 1 OS=Sus scrofa OX=9823 GN=CRTC1 PE=3 SV=4 CANONICAL=F1S903-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNF4-1", "url": "https://www.uniprot.org/uniprotkb/F1S903/entry#A0A5G2QNF4-1", "sequence": { "sequence": "MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQLQKSQYLQLGPSRGQYYGGSLPNVNQIGSGTVDLPFQTPFQSSGLDTSRTTRHHGLVDRVYRERGRLGSPHRRPLSVDKHGRQSDSCPYGTVYLSPPADTSWRRTNSDSALHQSTMTPTQPEPFTGGSQDTHQKRVLLLTVPGMEETTSETDKNLSKQAWDTKKTGSRPKSCEVPGINIFPSADQENTTALIPATHNTGGSLPDLTNIHFPSPLPTPLDPEEPTFPALSSSSSTGNLAANLTHLGIGSAGQGMSTPGSSPQHRPLSLSTEARRQQAQQVSPTLSPLSPITQLEQFNMMENAISSSSLYSPGSTLNYSQAAMMGLSGSPGSLPDTQQLGYPSHSSIPNIILTVTGESPPSLSKELTSTLAGVGDVSFDSDNQFPLDELKIDPLTLDGLHMLNDPDMVLADPATEDTFRMDRL", "length": 465, "header": "tr|A0A5G2QNF4-1|F1S903_PIG Computationally mapped isoform of CREB regulated transcription coactivator 1 OS=Sus scrofa OX=9823 GN=CRTC1 PE=3 SV=2 CANONICAL=F1S903-1" }, "locus": { "chromosome": "2", "start_pos": 59157130, "end_pos": 59074630, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083030.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083030.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066209.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066209.2" } ] } }, { "isoform_ac": "A0A5G2R069-1", "url": "https://www.uniprot.org/uniprotkb/F1S903/entry#A0A5G2R069-1", "sequence": { "sequence": "MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQLQKSQYLQLGPSRGQYYGGSLPNVNQIGSGTVDLPFQTPFQSSGLDTSRTTRHHGLVDRVYRERGRLGSPHRRPLSVDKHGRQSDSCPYGTVYLSPPADTSWRRTNSDSALHQSTMTPTQPEPFTGGSQDTHQKRVLLLTVPGMEETTSETDKNLSKQAWDTKKTGSRPKSCEVPGINIFPSADQENTTALIPATHNTGGSLPDLTNIHFPSPLPTPLDPEEPTFPALSSSSSTGNLAANLTHLGIGSAGQGMSTPGSSPQHRPLSLSTEARRQQAQQVSPTLSPLSPITQAVAMDALSLEQQLPYAFFTQAGSQQPPPPQPQPPPPPPPASQQQPPPPPQVPVGPPGGSLMPSASLTRGPQLPPLAVTVPSSLPQSPPESAGQPPMGIDIASAPALQQYRTSAGSPANQSPTSPVSNQGFSPGSSPQHSSTLGGVFGDSYYEQQMAARQANALSHQLEQFNMMENAISSSSLYSPGSTLNYSQAAMMGLSGSPGSLPDTQQLGYPSHSSIPNIILTVTGESPPSLSKELTSTLAGVGDVSFDSDNQFPLDELKIDPLTLDGLHMLNDPDMVLADPATEDTFRMDRL", "length": 631, "header": "tr|A0A5G2R069-1|F1S903_PIG Computationally mapped isoform of CREB regulated transcription coactivator 1 OS=Sus scrofa OX=9823 GN=CRTC1 PE=3 SV=1 CANONICAL=F1S903-1" }, "locus": { "chromosome": "2", "start_pos": 59157130, "end_pos": 59074630, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079672.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079672.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070512.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070512.1" } ] } }, { "isoform_ac": "F1S903-1", "url": "https://www.uniprot.org/uniprotkb/F1S903/entry#F1S903-1", "sequence": { "sequence": "MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQLQKSQYLQLGPSRGQYYGGSLPNVNQIGSGTVDLPFQPSGFLGEALAAAPVSLTPFQSSGLDTSRTTRHHGLVDRVYRERGRLGSPHRRPLSVDKHGRQSDSCPYGTVYLSPPADTSWRRTNSDSALHQSTMTPTQPEPFTGGSQDTHQKRVLLLTVPGMEETTSETDKNLSKQAWDTKKTGSRPKSCEVPGINIFPSADQENTTALIPATHNTGGSLPDLTNIHFPSPLPTPLDPEEPTFPALSSSSSTGNLAANLTHLGIGSAGQGMSTPGSSPQHRPLSLSTEARRQQAQQVSPTLSPLSPITQAVAMDALSLEQQLPYAFFTQAGSQQPPPPQPQPPPPPPPASQQQPPPPPQVPVGPPGGSLMPSASLTRGPQLPPLAVTVPSSLPQSPPESAGQPPMGIDIASAPALQQYRTSAGSPANQSPTSPVSNQGFSPGSSPQHSSTLGGVFGDSYYEQQMAARQANALSHQLEQFNMMENAISSSSLYSPGSTLNYSQAAMMGLSGSPGSLPDTQQLGYPSHSSIPNIILTVTGESPPSLSKELTSTLAGVGDVSFDSDNQFPLDELKIDPLTLDGLHMLNDPDMVLADPATEDTFRMDRL", "length": 647, "header": "tr|F1S903-1|F1S903_PIG Isoform 1 of CREB regulated transcription coactivator 1 OS=Sus scrofa OX=9823 GN=CRTC1 PE=3 SV=4 CANONICAL=F1S903-1" }, "locus": { "chromosome": "2", "start_pos": 59157130, "end_pos": 59074630, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015201.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015201.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014795.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014795.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R069", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R069" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S903", "url": "https://www.uniprot.org/uniprotkb/F1S903" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S903", "url": "https://www.uniprot.org/uniprotkb/F1S903" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S903", "url": "https://www.uniprot.org/uniprotkb/F1S903" } ], "pmid": "" }, { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "F1S903", "url": "https://www.uniprot.org/uniprotkb/F1S903" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1S903", "url": "https://www.uniprot.org/uniprotkb/F1S903" } ], "pmid": "" }, { "name": "protein homotetramerization", "id": "GO:0051289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051289", "evidence": [ { "database": "UniProtKB", "id": "F1S903", "url": "https://www.uniprot.org/uniprotkb/F1S903" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1S903", "url": "https://www.uniprot.org/uniprotkb/F1S903" } ], "pmid": "" }, { "name": "cellular response to cAMP", "id": "GO:0071320", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071320", "evidence": [ { "database": "UniProtKB", "id": "F1S903", "url": "https://www.uniprot.org/uniprotkb/F1S903" } ], "pmid": "" }, { "name": "entrainment of circadian clock by photoperiod", "id": "GO:0043153", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043153", "evidence": [ { "database": "UniProtKB", "id": "F1S903", "url": "https://www.uniprot.org/uniprotkb/F1S903" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "cAMP response element binding protein binding", "id": "GO:0008140", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008140", "evidence": [ { "database": "UniProtKB", "id": "F1S903", "url": "https://www.uniprot.org/uniprotkb/F1S903" } ], "pmid": "" }, { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "F1S903", "url": "https://www.uniprot.org/uniprotkb/F1S903" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 247, "end_pos": 249, "annotation": "n_glycosylation_sequon" }, { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" }, { "start_pos": 469, "end_pos": 471, "annotation": "n_glycosylation_sequon" }, { "start_pos": 541, "end_pos": 543, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S903-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 647, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S903-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S903" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S903", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S903" }, { "id": "PF12886", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12886" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transducer of regulated CREB activity C-terminal", "eco_id": "ECO_0000259", "start_pos": 572, "end_pos": 647, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1S903", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S903" }, { "id": "PF12884", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12884" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transducer of regulated CREB activity N-terminal", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 66, "start_aa": "Asn", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1S903", "database": "UniProtKB", 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] }, { "uniprot_canonical_ac": "F1SF60-1", "uniprot_ac": "F1SF60", "uniprot_id": "F1SF60_PIG", "mass": { "chemical_mass": 51655.0, "monoisotopic_mass": 51655.0 }, "refseq": { "ac": "XP_003130227", "name": "alkylglycerol monooxygenase isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130227" }, "gene_names": [ { "name": "AGMO", "type": "recommended", "evidence": [ { "id": "F1SF60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF60" } ] }, { "name": "AGMO", "type": "synonym", "evidence": [ { "id": "XP_003130227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130227" } ] } ], "protein_names": [ { "name": "Alkylglycerol monooxygenase", "type": "recommended", "evidence": [ { "id": "F1SF60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF60/entry#names_and_taxonomy" } ] }, { "name": "1.14.16.5", "type": "synonym", "evidence": [ { "id": "F1SF60", "database": "UniProtKB", "url": 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Ether lipids are essential components of brain membranes.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA16#function" }, { "database": "UniProtKB", "id": "ARBA00037122", "url": "https://www.uniprot.org/uniprotkb/ARBA00037122#function" }, { "database": "UniProtKB", "id": "A0A5G2QBV1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBV1#function" }, { "database": "UniProtKB", "id": "A0A5G2R167", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R167#function" }, { "database": "UniProtKB", "id": "A0A5G2RDU0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDU0#function" }, { "database": "UniProtKB", "id": "F1SF60", "url": "https://www.uniprot.org/uniprotkb/F1SF60#function" }, { "database": "UniProtKB", "id": "F1SF61", "url": "https://www.uniprot.org/uniprotkb/F1SF61#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SF60", "url": "https://www.uniprot.org/uniprotkb/F1SF60" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AGMO", "url": "https://www.uniprot.org/uniprotkb/F1SF60", "locus": { "chromosome": "9", "start_pos": 84551889, "end_pos": 84894843, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015356", "url": "https://www.ensembl.org/id/ENSSSCG00000015356" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015356", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015356", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513371", "url": "https://www.ncbi.nlm.nih.gov/gene/100513371", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006694", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006694", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051689", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051689", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513371", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513371", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SF60", "url": "https://www.orthodb.org/?gene=F1SF60", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21624", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21624", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21624:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21624:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04116", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04116", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24858", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24858", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-75109", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75109", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003130227", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130227", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "36255", "url": "https://www.rhea-db.org/rhea/36255", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QA16", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QA16-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBV1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBV1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R167", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R167", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R167-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R167-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDU0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDU0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF60", "url": "https://www.uniprot.org/uniprotkb/F1SF60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF60-1", "url": "https://www.uniprot.org/uniprotkb/F1SF60-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF61", "url": "https://www.uniprot.org/uniprotkb/F1SF61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF61-1", "url": "https://www.uniprot.org/uniprotkb/F1SF61-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKNPEAQQDVSVSQGIRMMFYMMKPNETSFQALEEVPDYVQKATPYFISLMLLELVVSWIRKGKPPGRLDDALTSMSAGILSRLPSLFSRSIELTSYIYIWENYSIISLPWDSPWTWYLTFLGVDFGYYWFHRMAHEVNILWAAHQTHHSSEGYNLSTALRQSVFQIYTSWIFYSPLALFIPPSVYAVHLQFNLLYQFWIHTKVIDNLGPLELILNTPSHHRVHHGRNRYCIDKNYAGTLIIWDRIFGTFEAENEKVVYGLTHPINTFEPFKVQFHHLVNIWTTFWATPGFFNKFSVMFKGPGWSPGKPRLGLSEEIPEVKGNEVPFSSSASQLLRIYVVVQFALMLTFYEETFADKAALSQVTLLLRVCFIILTLTSIGFLLDQKPKAAVLETFRCLLFLMLCRFGHLKPFIPSLSFTFEIFFSICIAFWGVKSMKQLVSEPWK", "length": 445, "header": "tr|F1SF60-1|F1SF60_PIG Isoform 1 of Alkylglycerol monooxygenase OS=Sus scrofa OX=9823 GN=AGMO PE=3 SV=3 CANONICAL=F1SF60-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QA16-1", "url": "https://www.uniprot.org/uniprotkb/F1SF60/entry#A0A5G2QA16-1", "sequence": { "sequence": "MKNPEAQQDVSVSQGIRMMFYMMKPNETSFQALEEVPDYVQKATPYFISLMLLELVVSWIRKGKPPGRLDDALTSMSAGILSRLPSLFSRSIELTSYIYIWENYSIISLPWDSPWTWYLTFLGVDFGYYWFHRMAHEVNILWAAHQTHHSSEGYNLSTALRQSVFQIYTSWIFYSPLALFIPPSVYAVHLQFNLLYQFWIHTKVIDNLGPLELILNTPSHHRVHHGRNRYCIDKNYAGTLIIWDRIFGTFEAENEKVVYGLTHPINTFEPFKVQFHHLVNIWTTFWATPGFFNKFSVMFKGPGWSPGKPRLGLSEEIPEVKGNEVPFSSSASQLLRIYVVVQFALMLTFYEETFADKAALSQVTLLLRVCFIILTLTSIGFLLDQKPKAAVLETFRCLLFLMLCRFGHLKPFIPSLSFTFERANPRQSGNPSHCSDNTRPSTH", "length": 443, "header": "tr|A0A5G2QA16-1|F1SF60_PIG Computationally mapped isoform of Alkylglycerol monooxygenase OS=Sus scrofa OX=9823 GN=AGMO PE=3 SV=2 CANONICAL=F1SF60-1" }, "locus": { "chromosome": "9", "start_pos": 84894672, "end_pos": 84583707, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088244.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088244.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060819.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060819.2" } ] } }, { "isoform_ac": "A0A5G2QBV1-1", "url": "https://www.uniprot.org/uniprotkb/F1SF60/entry#A0A5G2QBV1-1", "sequence": { "sequence": "MKNPEAQQDVSVSQGIRMMFYMMKPNETSFQALEEVPDYVQKATPYFISLMLLELVVSWIRKGKPPGRLDDALTSMSAGILSRLPSLFSRSIELTSYIYIWENYSIISLPWDSPWTWYLTFLGVDFGYYWFHRMAHEVNILWAAHQTHHSSEGYNLSTALRQSVFQIYTSWIFYSPLALFIPPSVYAVHLQFNLLYQFWIHTKVIDNLGPLELILNTPSHHRVHHGRNRYCIDKNYAGTLIIWDRIFGTFEAENEKVVYGLTHPINTFEPFKVQFHHLVNIWTTFWATPGFFNKFSVMFKGPGWSPGKPRLGLSEEIPEVKGNEVPFSSSASQLLRIYVVVQFALMLTFYEETFADKAALSQVTLLLRVCFIILTLTSIGFLLDQKPKAAVLETFRCLLFLMLCRFGHLKPFIPSLSFTFEVYFTMLINITVCGHTCLKLSLGSSQLYI", "length": 449, "header": "tr|A0A5G2QBV1-1|F1SF60_PIG Computationally mapped isoform of Alkylglycerol monooxygenase OS=Sus scrofa OX=9823 GN=AGMO PE=3 SV=1 CANONICAL=F1SF60-1" }, "locus": { "chromosome": "9", "start_pos": 84894672, "end_pos": 84687705, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070810.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070810.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061529.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061529.1" } ] } }, { "isoform_ac": "A0A5G2R167-1", "url": "https://www.uniprot.org/uniprotkb/F1SF60/entry#A0A5G2R167-1", "sequence": { "sequence": "MKNPEAQQDVSVSQGIRMMFYMMKPNETSFQALEEVPDYVQKATPYFISLMLLELVVSWIRKGKPPGRLDDALTSMSAGILSRLPSLFSRSIELTSYIYIWENYSIISLPWDSPWTWYLTFLGVDFGYYWFHRMAHEVNILWAAHQTHHSSEGYNLSTALRQSVFQIYTSWIFYSPLALFIPPSVYAVHLQFNLLYQFWIHTKVIDNLGPLELILNTPSHHRVHHGRNRYCIDKNYAGTLIIWDRIFGTFEAENEKVVYGLTHPINTFEPFKVQFHHLVNIWTTFWATPGFFNKFSVMFKGPGWSPGKPRLGLSEEIPEVKGNEVPFSSSASQLLRIYVVVQFALMLTFYEETFADKAALSQVTLLLRVCFIILTLTSIGFLLDQKPKAAVLETFRCLLFLMLCRFGHLKPFIPSLSFTFENSNLFSVCMFAIILIFHIAFYYSVLQRITMTMLIRLLTYITIPF", "length": 465, "header": "tr|A0A5G2R167-1|F1SF60_PIG Computationally mapped isoform of Alkylglycerol monooxygenase OS=Sus scrofa OX=9823 GN=AGMO PE=3 SV=2 CANONICAL=F1SF60-1" }, "locus": { "chromosome": "9", "start_pos": 84894672, "end_pos": 84666376, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087698.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087698.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067956.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067956.2" } ] } }, { "isoform_ac": "A0A5G2RDU0-1", "url": "https://www.uniprot.org/uniprotkb/F1SF60/entry#A0A5G2RDU0-1", "sequence": { "sequence": "MKNPEAQQDVSVSQGIRMMFYMMKPNETSFQALEEVPDYVQKATPYFISLMLLELVVSWIRKGKPPGRLDDALTSMSAGILSRLPSLFSRSIELTSYIYIWENYSIISLPWDSPWTWYLTFLGVDFGYYWFHRMAHEVNILWAAHQTHHSSEGYNLSTALRQSVFQIYTSWIFYSPLALFIPPSVYAVHLQFNLLYQFWIHTKVIDNLGPLELILNTPSHHRVHHGRNRYCIDKNYAGTLIIWDRIFGTFEAENEKVVYGLTHPINTFEPFKVQFHHLVNIWTTFWATPGFFNKFSVMFKGPGWSPGKPRLGLSEEIPEVKGNEVPFSSSASQLLRIYVVVQFALMLTFYEETFADKAALSQVTLLLRVCFIILTLTSIGFLLDQKPKAAVLETFRCLLFLMLCRFGHLKPFIPSLSFTFETPWRRRRGPSIASRKG", "length": 437, "header": "tr|A0A5G2RDU0-1|F1SF60_PIG Computationally mapped isoform of Alkylglycerol monooxygenase OS=Sus scrofa OX=9823 GN=AGMO PE=3 SV=2 CANONICAL=F1SF60-1" }, "locus": { "chromosome": "9", "start_pos": 84894672, "end_pos": 84641689, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086799.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086799.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068956.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068956.2" } ] } }, { "isoform_ac": "F1SF60-1", "url": "https://www.uniprot.org/uniprotkb/F1SF60/entry#F1SF60-1", "sequence": { "sequence": "MKNPEAQQDVSVSQGIRMMFYMMKPNETSFQALEEVPDYVQKATPYFISLMLLELVVSWIRKGKPPGRLDDALTSMSAGILSRLPSLFSRSIELTSYIYIWENYSIISLPWDSPWTWYLTFLGVDFGYYWFHRMAHEVNILWAAHQTHHSSEGYNLSTALRQSVFQIYTSWIFYSPLALFIPPSVYAVHLQFNLLYQFWIHTKVIDNLGPLELILNTPSHHRVHHGRNRYCIDKNYAGTLIIWDRIFGTFEAENEKVVYGLTHPINTFEPFKVQFHHLVNIWTTFWATPGFFNKFSVMFKGPGWSPGKPRLGLSEEIPEVKGNEVPFSSSASQLLRIYVVVQFALMLTFYEETFADKAALSQVTLLLRVCFIILTLTSIGFLLDQKPKAAVLETFRCLLFLMLCRFGHLKPFIPSLSFTFEIFFSICIAFWGVKSMKQLVSEPWK", "length": 445, "header": "tr|F1SF60-1|F1SF60_PIG Isoform 1 of Alkylglycerol monooxygenase OS=Sus scrofa OX=9823 GN=AGMO PE=3 SV=3 CANONICAL=F1SF60-1" }, "locus": { "chromosome": "9", "start_pos": 84894672, "end_pos": 84552508, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016731.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016731.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016285.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016285.3" } ] } }, { "isoform_ac": "F1SF61-1", "url": "https://www.uniprot.org/uniprotkb/F1SF60/entry#F1SF61-1", "sequence": { "sequence": "MKNPEAQQDVSVSQGIRMMFYMMKPNETSFQALEEVPDYVQKATPYFISLMLLELVVSWIRKGKPPGRLDDALTSMSAGILSRLPSLFSRSIELTSYIYIWENYSIISLPWDSPWTWYLTFLGVDFGYYWFHRMAHEVNILWAAHQTHHSSEGYNLSTALRQSVFQIYTSWIFYSPLALFIPPSVYAVHLQFNLLYQFWIHTKVIDNLGPLELILNTPSHHRVHHGRNRYCIDKNYAGTLIIWDRIFGTFEAENEKVVYGLTHPINTFEPFKVQFHHLVNIWTTFWATPGFFNKFSVMFKGPGWSPGKPRLGLSEEIPEVKGNEVPFSSSASQLLRIYVVVQFALMLTFYEETFADKAALSQVTLLLRVCFIILTLTSIGFLLDQKPKAAVLETFRCLLFLMLCRFGHLKPFIPSLSFTFEMWTVL", "length": 426, "header": "tr|F1SF61-1|F1SF61_PIG Computationally mapped isoform of Alkylglycerol monooxygenase OS=Sus scrofa OX=9823 GN=AGMO PE=3 SV=4 CANONICAL=F1SF60-1" }, "locus": { "chromosome": "9", "start_pos": 84894672, "end_pos": 84691148, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016730.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016730.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016284.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016284.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 288, "start_aa": "Thr", "end_pos": 288, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr288", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R167", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R167" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513371", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513371", "resource": "KEGG Pathway" }, { "id": "R-SSC-75109", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75109", "resource": "Reactome", "description": "Triglyceride biosynthesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "F1SF60", "url": "https://www.uniprot.org/uniprotkb/F1SF60" } ], "pmid": "" }, { "name": "glyceryl-ether monooxygenase activity", "id": "GO:0050479", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050479", "evidence": [ { "database": "UniProtKB", "id": "F1SF60", "url": "https://www.uniprot.org/uniprotkb/F1SF60" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SF60", "url": "https://www.uniprot.org/uniprotkb/F1SF60" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SF60", "url": "https://www.uniprot.org/uniprotkb/F1SF60" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "membrane lipid metabolic process", "id": "GO:0006643", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006643", "evidence": [ { "database": "UniProtKB", "id": "F1SF60", "url": "https://www.uniprot.org/uniprotkb/F1SF60" } ], "pmid": "" }, { "name": "triglyceride biosynthetic process", "id": "GO:0019432", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019432", "evidence": [ { "database": "UniProtKB", "id": "F1SF60", "url": "https://www.uniprot.org/uniprotkb/F1SF60" } ], "pmid": "" }, { "name": "ether lipid metabolic process", "id": "GO:0046485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046485", "evidence": [ { "database": "UniProtKB", "id": "F1SF60", "url": "https://www.uniprot.org/uniprotkb/F1SF60" } ], "pmid": "" }, { "name": "lipid biosynthetic process", "id": "GO:0008610", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008610", "evidence": [ { "database": "UniProtKB", "id": "F1SF60", "url": "https://www.uniprot.org/uniprotkb/F1SF60" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "36255", "name": "", "equation": "1-O-(1,2-saturated-alkyl)-sn-glycerol + (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin + O2 = a 1-(1-hydroxyalkyl)-sn-glycerol + (6R)-L-erythro-6,7-dihydrobiopterin + H2O", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "36255", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/36255" } ] }, { "id": "R-SSC-5696119", "name": "AGMO cleaves alkylglycerol into fatty aldehyde and glycerol", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "endoplasmic reticulum lumen, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-29870", "R-ALL-5696122" ], "output_participant_list": [ "R-ALL-1497857", "R-ALL-5696116" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5696119", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696119" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-1497857", "participant_name": "q-BH2 [cytosol]", "crossref": [ { "id": "ZINC000018181336", "database": "ZINC", "url": "" }, { "id": "43029", "database": "ChEBI", "url": "" }, { "id": "HMDB0000038", "database": "HMDB Metabolite", "url": "" } ] }, { "participant_id": "R-ALL-29870", "participant_name": "BH4 [cytosol]", "crossref": [ { "id": "59560", "database": "ChEBI", "url": "" }, { "id": "5276", "database": "Guide to Pharmacology - Ligands", "url": "" }, { "id": "ZINC000013585233", "database": "ZINC", 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"sequence": "MSGKENNFPPLPKFIPLKPCFYQNFSDEIPIEHQVLVKRIYQLWLFYCATLGVNLVACLAWWIAAGSGANFGLALVWLLLFSPCGYVCWFRPAYKAFRGWLAAIGFFQINVGAAVVMLLPAIMFSVSAAIMAIVIMKVHRIYRGTGGSFQKAQTEWSTGAWRNPPSREAQYNNFSGNSLPEYPTVPSYPASGSQWP", "length": 196, "header": "tr|A0A5G2RAH0-1|F1SDH4_PIG Computationally mapped isoform of Secretory carrier-associated membrane protein OS=Sus scrofa OX=9823 GN=SCAMP4 PE=1 SV=1 CANONICAL=F1SDH4-1" }, "locus": { "chromosome": "2", "start_pos": 76627268, "end_pos": 76616846, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069267.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069267.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073325.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073325.1" } ] } }, { "isoform_ac": "A0A5G2REQ9-1", "url": "https://www.uniprot.org/uniprotkb/F1SDH4/entry#A0A5G2REQ9-1", "sequence": { "sequence": "MSLGENNFPPLPKFIPLKPCFYQNFSDEIPIEHQVLVKRIYQLWLFYCATLGVNLVACLAWWIAAGSGANFGLALVWLLLFSPCGYVCWFRPAYKAFRSDSSFNFMAFFFIFGAQFVLAVIQAIGFSGWGTCGWLAAIGFFQINVGAAVVMLLPAIMFSVSAAIMAIVIMKVHRIYRGTGGSFQKAQTEWSTGAWRNPPSREAQYNNFSGNSLPEYPTVPSYPASGSQWP", "length": 230, "header": "tr|A0A5G2REQ9-1|F1SDH4_PIG Computationally mapped isoform of Secretory carrier-associated membrane protein OS=Sus scrofa OX=9823 GN=SCAMP4 PE=1 SV=1 CANONICAL=F1SDH4-1" }, "locus": { "chromosome": "2", "start_pos": 76626046, "end_pos": 76616846, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081770.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081770.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073151.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073151.1" } ] } }, { "isoform_ac": "F1SDH4-1", "url": "https://www.uniprot.org/uniprotkb/F1SDH4/entry#F1SDH4-1", "sequence": { "sequence": "MSGKENNFPPLPKFIPLKPCFYQNFSDEIPIEHQVLVKRIYQLWLFYCATLGVNLVACLAWWIAAGSGANFGLALVWLLLFSPCGYVCWFRPAYKAFRSDSSFNFMAFFFIFGAQFVLAVIQAIGFSGWGTCGWLAAIGFFQINVGAAVVMLLPAIMFSVSAAIMAIVIMKVHRIYRGTGGSFQKAQTEWSTGAWRNPPSREAQYNNFSGNSLPEYPTVPSYPASGSQWP", "length": 230, "header": "tr|F1SDH4-1|F1SDH4_PIG Isoform 1 of Secretory carrier-associated membrane protein OS=Sus scrofa OX=9823 GN=SCAMP4 PE=1 SV=2 CANONICAL=F1SDH4-1" }, "locus": { "chromosome": "2", "start_pos": 76627268, "end_pos": 76616846, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014690.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014690.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014294.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014294.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RAH0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAH0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738966", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738966", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AB36-1", "protein_name": "Secretory carrier-associated membrane 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"https://omabrowser.org/oma/group/F1SDH4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q969E2-1", "protein_name": "Secretory carrier-associated membrane protein 4", "gene_name": "SCAMP4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSEKENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLAWWIGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTVIQAIGFSGWGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAGGSFQKAQTEWNTGTWRNPPSREAQYNNFSGNSLPEYPTVPSYPGSGQWP", "length": 229 }, "evidence": [ { "id": "F1SDH4", "url": "https://omabrowser.org/oma/group/F1SDH4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9ET20-1", "protein_name": "Secretory carrier-associated membrane protein 4", "gene_name": "Scamp4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGKENNFPPLPHFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCTTLGVNLVACLAWWIAGGAGANFGLAMLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMAFFFIFGAQFVLTVIQAIGFSGWGACGWLATIGFFGTSVGAAVVMLIPAIMFSLSAVVMAITIVKVHRIYRGAGGSLQKAQTEWSAGTWRNPPSREAQFNSFSGNSLPEYPTVPSYSTSGSQWP", "length": 230 }, "evidence": [ { "id": "F1SDH4", "url": "https://omabrowser.org/oma/group/F1SDH4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9JKV5-1", "protein_name": "Secretory carrier-associated membrane protein 4", "gene_name": "Scamp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGKENNFPPLPPFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLVACLAWWIAGGAGANFGLALLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMTFFFIFGAQFVLTVIQAIGFSGWGACGWLAAVGFFGTSVGAAVVMLVPAILFSLSALVMAVTIVKVHRIYRGAGGSLQKAQTEWSAGTWRNPPSREAQFNSFSGNSLPEYPTVPSYSSSGGHWP", "length": 230 }, "evidence": [ { "id": "F1SDH4", "url": "https://omabrowser.org/oma/group/F1SDH4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1SDH4", "url": "https://www.uniprot.org/uniprotkb/F1SDH4" } ], "pmid": "" }, { "name": "exocytosis", "id": "GO:0006887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006887", "evidence": [ { "database": "UniProtKB", "id": "F1SDH4", "url": "https://www.uniprot.org/uniprotkb/F1SDH4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SDH4", "url": "https://www.uniprot.org/uniprotkb/F1SDH4" } ], "pmid": "" }, { "name": "trans-Golgi network membrane", "id": "GO:0032588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032588", "evidence": [ { "database": "UniProtKB", "id": "F1SDH4", "url": "https://www.uniprot.org/uniprotkb/F1SDH4" } ], "pmid": "" }, { "name": "recycling endosome membrane", "id": "GO:0055038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055038", "evidence": [ { "database": "UniProtKB", "id": "F1SDH4", "url": "https://www.uniprot.org/uniprotkb/F1SDH4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 207, "end_pos": 209, "annotation": "n_glycosylation_sequon" }, { "start_pos": 24, "end_pos": 26, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDH4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 230, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDH4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDH4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 207, "end_pos": 209 }, { "start_pos": 24, "end_pos": 26 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SBH1-1", "uniprot_ac": "F1SBH1", "uniprot_id": "F1SBH1_PIG", "mass": { "chemical_mass": 23290.0, "monoisotopic_mass": 23290.0 }, "refseq": { "ac": "XP_003134325", "name": "D-tyrosyl-tRNA(Tyr) deacylase 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134325" }, "gene_names": [ { "name": "DTD1", "type": "recommended", "evidence": [ { "id": "F1SBH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH1" } ] }, { "name": "DTD1", "type": "synonym", "evidence": [ { "id": "XP_003134325", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134325" } ] } ], "protein_names": [ { "name": "D-aminoacyl-tRNA deacylase", "type": "recommended", "evidence": [ { "id": "F1SBH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH1/entry#names_and_taxonomy" } ] }, { "name": "3.1.1.96", "type": "synonym", "evidence": [ { "id": "F1SBH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH1/entry#names_and_taxonomy" } ] }, { "name": "D-tyrosyl-tRNA(Tyr) deacylase 1", "type": "synonym", "evidence": [ { "id": "XP_003134325", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134325" } ] } ], "function": [ { "annotation": "An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA-based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RG01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RG01#function" }, { "database": "UniProtKB", "id": "ARBA00054206", "url": "https://www.uniprot.org/uniprotkb/ARBA00054206#function" }, { "database": "UniProtKB", "id": "F1SBH1", "url": "https://www.uniprot.org/uniprotkb/F1SBH1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBH1", "url": "https://www.uniprot.org/uniprotkb/F1SBH1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DTD1", "url": "https://www.uniprot.org/uniprotkb/F1SBH1", "locus": { "chromosome": "17", "start_pos": 26947435, "end_pos": 26811173, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007098", "url": "https://www.ensembl.org/id/ENSSSCG00000007098" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007098", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007098", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00563", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00563", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524407", "url": "https://www.ncbi.nlm.nih.gov/gene/100524407", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003732", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003732", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023509", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023509", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524407", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524407", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VFGADMK", "url": "https://omabrowser.org/oma/group/VFGADMK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SBH1", "url": "https://www.orthodb.org/?gene=F1SBH1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10472", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10472", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10472:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10472:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02580", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02580", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134325", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134325", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "13953", "url": "https://www.rhea-db.org/rhea/13953", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "53744", "url": "https://www.rhea-db.org/rhea/53744", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2RG01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RG01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RG01-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RG01-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBH1", "url": "https://www.uniprot.org/uniprotkb/F1SBH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBH1-1", "url": "https://www.uniprot.org/uniprotkb/F1SBH1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISLEDTQKELEHMVRKILNLRVFEDEGGRHWAKSVMDKQYEVLCVSQFTLQCVLKGNKPDFHLAMPSEQAEGFYNSFLEQLRKAYRPELIKDGKFGAYMQVHIQNDGPVTIELESPAPGAATSDPKQLSKLEKQQQRKEKTRAKGPSESSKERSTPRKEDRSASSGAEGDVSSEREP", "length": 209, "header": "tr|F1SBH1-1|F1SBH1_PIG Isoform 1 of D-aminoacyl-tRNA deacylase OS=Sus scrofa OX=9823 GN=DTD1 PE=1 SV=2 CANONICAL=F1SBH1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RG01-1", "url": "https://www.uniprot.org/uniprotkb/F1SBH1/entry#A0A5G2RG01-1", "sequence": { "sequence": "DQTPCQKVSLGGEQISAIGRGICVLLGISLEDTQKELEHMVRKILNLRVFEDEGGRHWAKSVMDKQYEVLCVSQFTLQCVLKGNKPDFHLAMPSEQAEGFYNSFLEQLRKAYRPELIKDGKFGAYMQVHIQNDGPVTIELESPAPGAATSDPKQLSKLEKQQQRKEKTRAKGPSESSKERSTPRKEDRSASSGAEGDVSSEREP", "length": 204, "header": "tr|A0A5G2RG01-1|F1SBH1_PIG Computationally mapped isoform of D-aminoacyl-tRNA deacylase OS=Sus scrofa OX=9823 GN=DTD1 PE=1 SV=1 CANONICAL=F1SBH1-1" }, "locus": { "chromosome": "17", "start_pos": 26934604, "end_pos": 26815518, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079218.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079218.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070049.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070049.1" } ] } }, { "isoform_ac": "F1SBH1-1", "url": "https://www.uniprot.org/uniprotkb/F1SBH1/entry#F1SBH1-1", "sequence": { "sequence": "MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISLEDTQKELEHMVRKILNLRVFEDEGGRHWAKSVMDKQYEVLCVSQFTLQCVLKGNKPDFHLAMPSEQAEGFYNSFLEQLRKAYRPELIKDGKFGAYMQVHIQNDGPVTIELESPAPGAATSDPKQLSKLEKQQQRKEKTRAKGPSESSKERSTPRKEDRSASSGAEGDVSSEREP", "length": 209, "header": "tr|F1SBH1-1|F1SBH1_PIG Isoform 1 of D-aminoacyl-tRNA deacylase OS=Sus scrofa OX=9823 GN=DTD1 PE=1 SV=2 CANONICAL=F1SBH1-1" }, "locus": { "chromosome": "17", "start_pos": 26934604, "end_pos": 26811328, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007770.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007770.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007561.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007561.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 14, "start_aa": "Thr", "end_pos": 14, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr14", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RG01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RG01" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524407", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524407", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1QGC8-1", "protein_name": "D-aminoacyl-tRNA deacylase 1", "gene_name": "dtd1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKAIIQRVTRASVTVGEEQISSIGRGLCVLLGISVEDTQKDVDYMVRKILNLRVFEDENGRAWSRSVMDGELEVLCVSQFTLQCLLKGNKPDYHAAMPAELAQPFYNNMLEQLRETYKPELIKDGQFGAKMQVLIQNDGPVTIQLESPPAPTDPKLLSKQEKQQQRKEKTRSKGPSDSSREKAAQRSKVDPSASSGAEGDVSSEREP", "length": 207 }, "evidence": [ { "id": "F1SBH1", "url": "https://omabrowser.org/oma/group/F1SBH1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3GVV9-1", "protein_name": "D-aminoacyl-tRNA deacylase", "gene_name": "Dtd1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKAVVQRVTQASVTVGGEQISAIGRGICVLLGISVEDSQKELEHMVRKILNLRVFEDESGKHWSKNVMDKQYEVLCVSQFTLQCVLKGNKPDFHLAMPTEQAESFYNSFLEQLRKSYRPELIRDGKFGAYMQVHIQNDGPVTIELESPAAGAANSDPKQLSKLEKQQQRKEKTRAKGPSESSKERSAPRKEDRSASSGAEGDVSSEREP", "length": 209 }, "evidence": [ { "id": "F1SBH1", "url": "https://omabrowser.org/oma/group/F1SBH1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q07648-1", "protein_name": "D-aminoacyl-tRNA deacylase", "gene_name": "DTD1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MKIVLQKVSQASVVVDSKVISSIKHGYMLLVGISIDDSMAEIDKLSKKVLSLRIFEDESRNLWKKNIKEANGEILSVSQFTLMAKTKKGTKPDFHLAQKGHIAKELYEEFLKLLRSDLGEEKVKDGEFGAMMSCSLTNEGPVTIILDSDQ", "length": 150 }, "evidence": [ { "id": "F1SBH1", "url": "https://omabrowser.org/oma/group/F1SBH1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q2T9V8-1", "protein_name": "D-aminoacyl-tRNA deacylase 1", "gene_name": "DTD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISLEDTQKELEHMVRKILNLRVFEDESGKHWSKSVMDKQYEVLCVSQFTLQCVLKGNKPDFHLAMPAEQAESFYKGFLEQLRKAYRPELVKDGKFGAYMQVHIQNDGPVTIELESPAPGAAASDPKQLSKLEKQQQRKEKTRAKGPSESSKERSAPRKEDRSASSGAEGDVSSEREP", "length": 209 }, "evidence": [ { "id": "F1SBH1", "url": "https://omabrowser.org/oma/group/F1SBH1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54EY1-1", "protein_name": "D-aminoacyl-tRNA deacylase", "gene_name": "dtd", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKAIIQRVKSSSVTVEGEVISEIKQGLMCLIGIGRDDTKEDAEYITRKILNLRLWKNEDGTKNWDRSVQQMDYEILFVSQFTLFAQLKGNKQSYHLAMAPELSKQFYLDFLENAKKSYKPEKIKDGRFGAMMDVQLINDGPVTIQLDSKEK", "length": 151 }, "evidence": [ { "id": "F1SBH1", "url": "https://omabrowser.org/oma/group/F1SBH1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9DD18-1", "protein_name": "D-aminoacyl-tRNA deacylase 1", "gene_name": "Dtd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISMEDSQKELEHMVRKILNLRVFEDESGKHWSKSVMDKEYEVLCVSQFTLQCVLKGNKPDFHLAMPTEQAESFYNSFLEQLRKSYRPELIRDGKFGAYMQVHIQNDGPVTIELESPAPGAASSDPKQLSKLEKQQQRKEKTRAKGPSESSKERNAPRKEDRSASSGAEGDVSSEREP", "length": 209 }, "evidence": [ { "id": "F1SBH1", "url": "https://omabrowser.org/oma/group/F1SBH1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VGP0-1", "protein_name": "D-aminoacyl-tRNA deacylase", "gene_name": "Dtd", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MRAVIQRVKAAKVTVLDELVSSIGPGLCVLVGIKASDTAKDVEYLVRKILALRLFEEEGKRWQKSVKDLNLELLCVSQFTLYHRLKGNKPDFLAAMKGEEAQELYNQFLDRLGQSYDSTKIKDGKFGAYMQVHIENDGPVTINLESPEQKDTDREVDK", "length": 158 }, "evidence": [ { "id": "F1SBH1", "url": "https://omabrowser.org/oma/group/F1SBH1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, 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"count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S9B6-1", "uniprot_ac": "F1S9B6", "uniprot_id": "F1S9B6_PIG", "mass": { "chemical_mass": 48924.0, "monoisotopic_mass": 48924.0 }, "refseq": {}, "gene_names": [ { "name": "OXA1L", "type": "recommended", "evidence": [ { "id": "F1S9B6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9B6" } ] } ], "protein_names": [ { "name": "OXA1L mitochondrial inner membrane protein", "type": "synonym", "evidence": [ { "id": "F1S9B6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9B6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9B6", "url": "https://www.uniprot.org/uniprotkb/F1S9B6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OXA1L", "url": "https://www.uniprot.org/uniprotkb/F1S9B6", "locus": { "chromosome": "7", "start_pos": 76230889, "end_pos": 76266429, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002042", "url": "https://www.ensembl.org/id/ENSSSCG00000002042" } ] } } ], "crossref": [ { "id": "ENSSSCG00000002042", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002042", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20069", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20069", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001708", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001708", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GWKNAQT", "url": "https://omabrowser.org/oma/group/GWKNAQT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12428", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12428", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12428:SF66", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12428:SF66", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5389840", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5419276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9937383", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2RH08", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RH08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RH08-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RH08-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9B6", "url": "https://www.uniprot.org/uniprotkb/F1S9B6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9B6-1", "url": "https://www.uniprot.org/uniprotkb/F1S9B6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAMGLMCGRRELLRLLQPQRQFHSVAGLRQWPRKPLTPGLRFPAGRRCGHPHYVLLAAPGPRGLSTSAIFYAEAQVQAPPVTPATPPPTAVPEVASGETADIVQAAAEQSFSELGLGSYTPVGLIQNLLEFMHVNLGLPWWGAIATCTVLARCLVFPLIVKGQREAAKIHNHLPEIQKFSTRIREAKLTGNHTEFYRASSEMTFYQKKHDIKLFKPLILPLTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTLSDPTYILPLVVTATMWGVLELGAETGMQSSDLQWMRNFIRLMPLAVLPITIHFPSAVFMYWFSSNMFSLGQVLCLRIPAVRTVLKIPQRVVHDSSTLLPREGFIKSFKRGWKNAEMAHQLQERERRMQNHLELAARGPLRQTFTHNPLLQPGKNDAPVTTNSSSNKPKAKHPWRDTLG", "length": 436, "header": "tr|F1S9B6-1|F1S9B6_PIG Isoform 1 of OXA1L mitochondrial inner membrane protein OS=Sus scrofa OX=9823 GN=OXA1L PE=3 SV=5 CANONICAL=F1S9B6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RH08-1", "url": "https://www.uniprot.org/uniprotkb/F1S9B6/entry#A0A5G2RH08-1", "sequence": { "sequence": "MAMGLMCGRRELLRLLQPQRQFHSVAGLRQWPRKPLTPGLRFPAGRRCGHPHYVLLAAPGPRGLSTSAIFYAEAQVQAPPVTPATPPPTAVPEVASGETADIVQAAAEQSFSELGLGSYTPVGLIQNLLEFMHVNLGLPWWGAIATCTVLARCLVFPLIVKGQREAAKIHNHLPEIQKFSTRIREAKLTGNHTEFYRASSEMTFYQKKHDIKLFKPLILPLTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTLSDPTYILPLVVTATMWGVLELGAETGMQSSDLQWMRNFIRLMPLAVLPITIHFPSAVFMYWFSSNMFSLGQVLCLRIPAVRTVLKIPQRVVHDSSTLLPREGFIKSFKRGPLRQTFTHNPLLQPGKNDAPVTTNSSSNKPKAKHPWRDTLG", "length": 409, "header": "tr|A0A5G2RH08-1|F1S9B6_PIG Computationally mapped isoform of OXA1L mitochondrial inner membrane protein OS=Sus scrofa OX=9823 GN=OXA1L PE=3 SV=1 CANONICAL=F1S9B6-1" }, "locus": { "chromosome": "7", "start_pos": 76266398, "end_pos": 76236131, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076293.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076293.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070570.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070570.1" } ] } }, { "isoform_ac": "F1S9B6-1", "url": "https://www.uniprot.org/uniprotkb/F1S9B6/entry#F1S9B6-1", "sequence": { "sequence": "MAMGLMCGRRELLRLLQPQRQFHSVAGLRQWPRKPLTPGLRFPAGRRCGHPHYVLLAAPGPRGLSTSAIFYAEAQVQAPPVTPATPPPTAVPEVASGETADIVQAAAEQSFSELGLGSYTPVGLIQNLLEFMHVNLGLPWWGAIATCTVLARCLVFPLIVKGQREAAKIHNHLPEIQKFSTRIREAKLTGNHTEFYRASSEMTFYQKKHDIKLFKPLILPLTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTLSDPTYILPLVVTATMWGVLELGAETGMQSSDLQWMRNFIRLMPLAVLPITIHFPSAVFMYWFSSNMFSLGQVLCLRIPAVRTVLKIPQRVVHDSSTLLPREGFIKSFKRGWKNAEMAHQLQERERRMQNHLELAARGPLRQTFTHNPLLQPGKNDAPVTTNSSSNKPKAKHPWRDTLG", "length": 436, "header": "tr|F1S9B6-1|F1S9B6_PIG Isoform 1 of OXA1L mitochondrial inner membrane protein OS=Sus scrofa OX=9823 GN=OXA1L PE=3 SV=5 CANONICAL=F1S9B6-1" }, "locus": { "chromosome": "7", "start_pos": 76266398, "end_pos": 76236131, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002285.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002285.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002233.5", "url": "https://www.ensembl.org/id/ENSSSCP00000002233.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 82, "start_aa": "Thr", "end_pos": 82, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr82", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RH08", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RH08" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5389840", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "resource": "Reactome", "description": "Mitochondrial translation elongation" }, { "id": "R-SSC-5419276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "resource": "Reactome", "description": "Mitochondrial translation termination" }, { "id": "R-SSC-9937383", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "resource": "Reactome", "description": "Mitochondrial ribosome-associated quality control" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZRH1-1", "protein_name": "OXA1L, mitochondrial inner membrane protein", "gene_name": "Oxa1l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVSQNSWPRHVFINNSLRVIMLGTWALVEKPTITGLTSCPFPKWPLPQLQSSVCACARVSSLPGKMAMGSVCRRWQLLRLLQPPRSFHSVAGSLKPLATKLLAARSGSGRPHYALLAVLTPRCISTSAALFAEAQVQVPPVVPAASAPAAVPEVASAGPADVVQCATEQSFAELGLGSYTPVGLIQNLLEYIHVDLGLPWWGAIATCTVLARCLVFPLIVKGQREAAKIHNHMPEMQKFSARIREAKLSGDQAEFYKATIEMTHYQKKHDIKFFRPLILPLTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDPIYVLPLVVTATMWGVLELGAETGMQSSDLQLMRNVIRVMPLAVLPVTIHFPSAVFMYWLSSNVFSLCQVACLRFPAVRTALKIPQRVVHDPSKLPPREGFLKSFKKGWKNAEIAHRLREREERMQKHLDLAARGPLRQTFTHNPLLQHDPSRSPNTPNSSTNSVKANTKKPWQDTLG", "length": 499 }, "evidence": [ { "id": "F1S9B6", "url": "https://omabrowser.org/oma/group/F1S9B6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QFT8-1", "protein_name": "Mitochondrial inner membrane protein OXA1L", "gene_name": "oxa1l", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAALRGRVVTECLTTCIFRQTSTPSVSTLPIVLTRNEWFVQRSHLHTGKGNRGLVRALLGCQNHGQFLLVNAVGIRHNSSQTVETTVQRVSTPSEPPDAAISAPASIPAPAVDPTPSVTPQITEQVAEAPLTALDVLQGVGAEASLSELGLCNSTPVGLIQNLLEFMHVSIGLPWWGAIVAGTIVARCAVFPVIVKGQREAAKLNNVMPEMTKLTNRMNEAKQSGNKFEFSKAYTDLMMFQKKKDVNPFRGFLVPLVQAPIFLSFFIALRKMSELPVPSLQTGGLWWFTDLTAADPFYILPIAVTGTMVAILELGAESGVDNPNLRAMKTVFRIMPFVILPLTINFPTAVFTYWMTSNLFSLAQVAVLRHPAVRQKLRIPERIVHPQSALPENEGFFATVKKGWKNAQLAQQLEERERRIKGHLDIAAKGPLRQTFTHNPLQQSAAPMSTGKPSNPNQGKKRPWEDTIG", "length": 469 }, "evidence": [ { "id": "F1S9B6", "url": "https://omabrowser.org/oma/group/F1S9B6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3HRC8-1", "protein_name": "Mitochondrial inner membrane protein OXA1L", "gene_name": "Oxa1l", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAMSLVCGQRQLLRLLRPQRSFHSVAGSLKPLATELLVAARLGGGRPHYALLAASSPRCISTSASSSAEAQVQAPPVVPATPTPPVVPEVASGGTADAIQCAAEQSFSELGLGSYTPVGLIQNLLEFMHVDLGLPWWGAIATCTVLARCLVFPLIVKGQREAVKIHNHMPVIQKFSTQIREAKLAGDQAEFYRASIEMTRYQKKHDIKLLRPLILPLTQAPVFISFFIALREMANLPVPSLQTGGLWWFQDLTISDPIYVLPLVVTATMWGVLELGAETGVQSSDLQFMRNIIRVMPLMVLPVTIHFPSAVFMYWLSSNLFSLCQVACLRIPAVRTVLKIPQRVIHDPDTLPPREGFLKSFKTGWKKAEIAHQLQEREQRMQKHLDLAARGPLRQTFTHNPLLQHNPNHPPNTPNSSSTSSKPKSKPWHDTLG", "length": 433 }, "evidence": [ { "id": "F1S9B6", "url": "https://omabrowser.org/oma/group/F1S9B6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P39952-1", "protein_name": "Mitochondrial inner membrane protein OXA1", "gene_name": "OXA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MFKLTSRLVTSRFAASSRLATARTIVLPRPHPSWISFQAKRFNSTGPNANDVSEIQTQLPSIDELTSSAPSLSASTSDLIANTTQTVGELSSHIGYLNSIGLAQTWYWPSDIIQHVLEAVHVYSGLPWWGTIAATTILIRCLMFPLYVKSSDTVARNSHIKPELDALNNKLMSTTDLQQGQLVAMQRKKLLSSHGIKNRWLAAPMLQIPIALGFFNALRHMANYPVDGFANQGVAWFTDLTQADPYLGLQVITAAVFISFTRLGGETGAQQFSSPMKRLFTILPIISIPATMNLSSAVVLYFAFNGAFSVLQTMILRNKWVRSKLKITEVAKPRTPIAGASPTENMGIFQSLKHNIQKARDQAERRQLMQDNEKKLQESFKEKRQNSKIKIVHKSNFINNKK", "length": 402 }, "evidence": [ { "id": "F1S9B6", "url": "https://omabrowser.org/oma/group/F1S9B6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q15070-1", "protein_name": "Mitochondrial inner membrane protein OXA1L", "gene_name": "OXA1L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAMGLMCGRRELLRLLQSGRRVHSVAGPSQWLGKPLTTRLLFPAAPCCCRPHYLFLAASGPRSLSTSAISFAEVQVQAPPVVAATPSPTAVPEVASGETADVVQTAAEQSFAELGLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFPLIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALYQKKHGIKLYKPLILPVTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDPIYILPLAVTATMWAVLELGAETGVQSSDLQWMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFSLVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREGFLESFKKGWKNAEMTRQLREREQRMRNQLELAARGPLRQTFTHNPLLQPGKDNPPNIPSSSSKPKSKYPWHDTLG", "length": 435 }, "evidence": [ { "id": "F1S9B6", "url": "https://omabrowser.org/oma/group/F1S9B6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3SYV3-1", "protein_name": "Mitochondrial inner membrane protein OXA1L", "gene_name": "OXA1L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALALMCGRRQLLCLLRPQRQFHSVAGPCQWPRKPLTAGLGFPADRCLGHPRYVLLMAPGPRGLSTSAVSFGEAQVPAPPVIPATPPPTAVPEVASGEAADVIQAAAEQSFAELGLGSYTPVGLIQNLLEFMHVNLGLPWWGAIAACTVLARCLVFPLIVKGQREAAKIHNHLPEIQKFSARIREAKLTGNHTEFYRASSEMTFYQKKHDIKLFRPLILPLTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTLSDPIYVLPLVVTATMWGVLELGAETGMQSSDLQWMRNFIRLMPLAVLPITIHFPTAVFMYWLSSNMFSLGQVACLRIPAVRTVLKIPQRVVHDPDKLAPREGFLKSFKQGWKNAEMAHQLQERERRMQNHLELAARGPLRQTFAHNPLLQHGKNDPPNTPNSSSSSSSSNKAKSKQPWRDTLG", "length": 441 }, "evidence": [ { "id": "F1S9B6", "url": "https://omabrowser.org/oma/group/F1S9B6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BGA9-1", "protein_name": "Mitochondrial inner membrane protein OXA1L", "gene_name": "Oxa1l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARNLVCGRWQLLRLLRPQRSYHSVAVSLRPLAAELLAARRGNGRPPCALLAVFTPRCISTSATLFAEAQVQAPPVIPATSIPAAVPEVASGGAADVVQCATEPSFTELGLGSYTPVGLIQNLLEYIHVDLGLPWWGAIATCTVLARCLVFPLIVKGQREAAKIHNHMPEMQKFSARIREAKLAGDQAEFYKATIEMTRYQKKHDIKLLRPLILPLTQAPVFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDPIYVLPLVVTATMWCVLELGAETGVQSNDLQFMRNIIRVMPLVVLPVTIHFPSAVFMYWLSSNVFSLCQVACLRIPAVRTVLKIPQRVVHDPDKLPPREGFLKSFKKGWKNAEIAQQLREREQRMQKHLDLAARGPLRQTFTHNPLLQHDPSHPPKAPNSNNSSIKANAKKPWQDTLG", "length": 433 }, "evidence": [ { "id": "F1S9B6", "url": "https://omabrowser.org/oma/group/F1S9B6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1S9B6", "url": "https://www.uniprot.org/uniprotkb/F1S9B6" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "F1S9B6", "url": "https://www.uniprot.org/uniprotkb/F1S9B6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "membrane insertase activity", "id": "GO:0032977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032977", "evidence": [ { "database": "UniProtKB", "id": "F1S9B6", "url": "https://www.uniprot.org/uniprotkb/F1S9B6" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1S9B6", "url": "https://www.uniprot.org/uniprotkb/F1S9B6" } ], "pmid": "" }, { "name": "mitochondrial ribosome binding", "id": "GO:0097177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097177", "evidence": [ { "database": "UniProtKB", "id": "F1S9B6", "url": "https://www.uniprot.org/uniprotkb/F1S9B6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "protein tetramerization", "id": "GO:0051262", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051262", "evidence": [ { "database": "UniProtKB", "id": "F1S9B6", "url": "https://www.uniprot.org/uniprotkb/F1S9B6" } ], "pmid": "" }, { "name": "mitochondrial respiratory chain complex I assembly", "id": "GO:0032981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032981", "evidence": [ { "database": "UniProtKB", "id": "F1S9B6", "url": "https://www.uniprot.org/uniprotkb/F1S9B6" } ], "pmid": "" }, { "name": "mitochondrial proton-transporting ATP synthase complex assembly", "id": "GO:0033615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033615", "evidence": [ { "database": "UniProtKB", "id": "F1S9B6", "url": "https://www.uniprot.org/uniprotkb/F1S9B6" } ], "pmid": "" }, { "name": "aerobic respiration", "id": "GO:0009060", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009060", "evidence": [ { "database": "UniProtKB", "id": "F1S9B6", "url": "https://www.uniprot.org/uniprotkb/F1S9B6" } ], "pmid": "" }, { "name": "protein insertion into mitochondrial inner membrane from matrix", "id": "GO:0032979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032979", "evidence": [ { "database": "UniProtKB", "id": "F1S9B6", "url": "https://www.uniprot.org/uniprotkb/F1S9B6" } ], "pmid": "" }, { "name": "mitochondrial protein quality control", "id": "GO:0141164", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141164", "evidence": [ { "database": "UniProtKB", "id": "F1S9B6", "url": "https://www.uniprot.org/uniprotkb/F1S9B6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" }, { "start_pos": 419, "end_pos": 421, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9B6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9B6" }, { "id": "PF02096", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02096" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Membrane insertase YidC/Oxa/ALB C-terminal", "eco_id": "ECO_0000259", "start_pos": 134, "end_pos": 333, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 82 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 191, "end_pos": 193 }, { "start_pos": 419, "end_pos": 421 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SDD7-1", "uniprot_ac": "F1SDD7", "uniprot_id": "F1SDD7_PIG", "mass": { "chemical_mass": 60703.0, "monoisotopic_mass": 60703.0 }, "refseq": { "ac": "XP_020945605", "name": "DNA-directed RNA polymerase III subunit RPC3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945605" }, "gene_names": [ { "name": "POLR3C", "type": "recommended", "evidence": [ { "id": "F1SDD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDD7" } ] }, { "name": "POLR3C", "type": "synonym", "evidence": [ { "id": "XP_020945605", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945605" } ] } ], "protein_names": [ { "name": "DNA-directed RNA polymerase III subunit RPC3", "type": "recommended", "evidence": [ { "id": "F1SDD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDD7/entry#names_and_taxonomy" } ] }, { "name": "DNA-directed RNA polymerase III subunit RPC3", "type": "synonym", "evidence": [ { "id": "XP_020945605", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945605" } ] }, { "name": "RNA polymerase III subunit C3", "type": "synonym", "evidence": [ { "id": "F1SDD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDD7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SKQ2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SKQ2#function" }, { "database": "UniProtKB", "id": "RU367076", "url": "https://www.uniprot.org/uniprotkb/RU367076#function" }, { "database": "UniProtKB", "id": "ARBA00055266", "url": "https://www.uniprot.org/uniprotkb/ARBA00055266#function" }, { "database": "UniProtKB", "id": "F1SDD7", "url": "https://www.uniprot.org/uniprotkb/F1SDD7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDD7", "url": "https://www.uniprot.org/uniprotkb/F1SDD7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POLR3C", "url": "https://www.uniprot.org/uniprotkb/F1SDD7", "locus": { "chromosome": "4", "start_pos": 99479372, "end_pos": 99494142, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006691", "url": "https://www.ensembl.org/id/ENSSSCG00000006691" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006691", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006691", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516367", "url": "https://www.ncbi.nlm.nih.gov/gene/100516367", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055207", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055207", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516367", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516367", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GQYVVHM", "url": "https://omabrowser.org/oma/group/GQYVVHM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SDD7", "url": "https://www.orthodb.org/?gene=F1SDD7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12949", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12949", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12949:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12949:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05645", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05645", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08221", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08221", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-76061", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76061", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-76066", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76066", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-76071", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76071", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020945605", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945605", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1SKQ2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SKQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SKQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SKQ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDD7", "url": "https://www.uniprot.org/uniprotkb/F1SDD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDD7-1", "url": "https://www.uniprot.org/uniprotkb/F1SDD7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTRTSLDQVKKALCVLIQHNLVIYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPLVPATENSDPGPLPPAPNLVINEKDMYLVPKLSLIGKGKRRRSSDEDATGEPKAKRPKHATDNKEPSPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQKKHLEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHKCYKSVANLIERRQFETKENKRLLEKSQRVEAIITSMQATGAEEDQLQEIEEMITAPERQQLETLKRNVSKLDACEIQVDETIFLLESYIESTMKRQ", "length": 534, "header": "tr|F1SDD7-1|F1SDD7_PIG Isoform 1 of DNA-directed RNA polymerase III subunit RPC3 OS=Sus scrofa OX=9823 GN=POLR3C PE=3 SV=2 CANONICAL=F1SDD7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SKQ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SDD7/entry#A0A4X1SKQ2-1", "sequence": { "sequence": "MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTRTSLDQVKKALCVLIQHNLVIYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPLVPATENSDPGPLPPAPNLVINEKDMYLVPKLSLIGKGKRRRSSDEDATGEPKAKRPKHATDNKEPSPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQKKHLEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQVGCL", "length": 411, "header": "tr|A0A4X1SKQ2-1|F1SDD7_PIG Computationally mapped isoform of DNA-directed RNA polymerase III subunit RPC3 OS=Sus scrofa OX=9823 GN=POLR3C PE=3 SV=1 CANONICAL=F1SDD7-1" }, "locus": { "chromosome": "4", "start_pos": 99492182, "end_pos": 99480443, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084271.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084271.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064041.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064041.1" } ] } }, { "isoform_ac": "F1SDD7-1", "url": "https://www.uniprot.org/uniprotkb/F1SDD7/entry#F1SDD7-1", "sequence": { "sequence": "MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTRTSLDQVKKALCVLIQHNLVIYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPLVPATENSDPGPLPPAPNLVINEKDMYLVPKLSLIGKGKRRRSSDEDATGEPKAKRPKHATDNKEPSPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQKKHLEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHKCYKSVANLIERRQFETKENKRLLEKSQRVEAIITSMQATGAEEDQLQEIEEMITAPERQQLETLKRNVSKLDACEIQVDETIFLLESYIESTMKRQ", "length": 534, "header": "tr|F1SDD7-1|F1SDD7_PIG Isoform 1 of DNA-directed RNA polymerase III subunit RPC3 OS=Sus scrofa OX=9823 GN=POLR3C PE=3 SV=2 CANONICAL=F1SDD7-1" }, "locus": { "chromosome": "4", "start_pos": 99492182, "end_pos": 99480376, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007330.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007330.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007135.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007135.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SKQ2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SKQ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516367", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516367", "resource": "KEGG Pathway" }, { "id": "R-SSC-76061", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76061", "resource": "Reactome", "description": "RNA Polymerase III Transcription Initiation From Type 1 Promoter" }, { "id": "R-SSC-76066", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76066", "resource": "Reactome", "description": "RNA Polymerase III Transcription Initiation From Type 2 Promoter" }, { "id": "R-SSC-76071", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76071", "resource": "Reactome", "description": "RNA Polymerase III Transcription Initiation From Type 3 Promoter" } ], "orthologs": [ { "uniprot_canonical_ac": "G3H2R8-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC3", "gene_name": "Polr3c", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIHHNLVIYRVHKRSVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCPLVPATGDSDPGPPPPAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDASGEPKAKKPKHTDNKEPIPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTPSGAPFTQPLSSNEIFRSLPGSYNISKQVLDQYLTLLADDPLEFIGKSGDSGGGMYVINLHKALASLATATLESVIQERFGSRCARIFRLVLQKKHLEQKQVEDFAMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAEEVQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLLESYIESTMKRQ", "length": 533 }, "evidence": [ { "id": "F1SDD7", "url": "https://omabrowser.org/oma/group/F1SDD7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q2TBL4-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC3", "gene_name": "POLR3C", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHNLVTYQVHKRGVVEYEAQCNRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCPLVPATENSDTGPPPPAPTLVVSEKDMYLVPKLSLIGKGKRRRSSDEDATGEPKAKRPKQTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQKKHLEQKQVEDFAMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSVANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKLDACEIQVDETIFLLESYIESTMKR", "length": 533 }, "evidence": [ { "id": "F1SDD7", "url": "https://omabrowser.org/oma/group/F1SDD7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q55FJ5-1", "protein_name": "DNA-directed RNA polymerase III subunit rpc3", "gene_name": "polr3c", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYEQKVAIDIVKESFGDDVTKVFEFLVQRGKSSYKIINQSLSGKGGLTIKRIKQCLLVLIQHNLVTYEEFLLPLTKDEIEKLVPGEPLPSDSVYEAIIVNAIHRLRFPKFINYIKHSKGDEAAYILEELIDHGRLPMDLLIKQASQIQRVDTFEDQDDITKRFEDTFTKLIMDQFIMRAPRPRPVSDQETSNALSKEAKKVGGGGANGNNVGAHQKKDSDPFALPSVGFSSNGPLSSVDNSANDAESLEILTGKSSTTTIPSQPKKGTAKKTSAKPKSTAINTTATASLGRKRKSRDIYDEDDDEEPDLLVIEENVEINVNDHNSANKNSTTTTTTTTTKTGQHTLKKSKLDQSSSTTTTSSRQQQNGMDQQRIIDESRVLWTINYEQFIIEFKLKACYDFVTEKNNQQSGLLFNAMVKLCKRSIRSNQDSLTSCVYGENILEEYNRDLDSSKKMDKLQIEKYLSIMQASRPSMVTKMVSKSKQSSSSELGAYQVNVGNIIGIIKQKMVESIIKQKFGDNGLRVFKLLLIKNLLEPKQIAELAMIPPNECKALLFNMMQKNIIRLQEIPRSSDHFANRTFYLFFVDLPTIIATFTEDIFKAIYNTRERLKSELEPHKDALEKLTQLDEDQITEDQAKIYKKTDRITQTLLTVILNLDNDLLHLYSF", "length": 666 }, "evidence": [ { "id": "F1SDD7", "url": "https://omabrowser.org/oma/group/F1SDD7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5XIL3-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC3", "gene_name": "Polr3c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTKASLDQVKKALCVLIHHNLVIYHVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCPLVPDTDSSDPGPPPPAPNLVINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKKPRCTDNEEPTPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKAGDSGGGMYVINLHKALASLSTATLESVIQERFGSRCARIFRLVLQKKHLEQKQVEDFAMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIERRQFETKENKRLLEKSQRVEAIMASMQATGAEEVQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLLESYIESTMKRQ", "length": 533 }, "evidence": [ { "id": "F1SDD7", "url": "https://omabrowser.org/oma/group/F1SDD7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9BUI4-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC3", "gene_name": "POLR3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSVPTTENSDPGPPPPAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLLESYIECTMKRQ", "length": 534 }, "evidence": [ { "id": "F1SDD7", "url": "https://omabrowser.org/oma/group/F1SDD7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D483-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC3", "gene_name": "Polr3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTQAEIKLCSLLLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHHNLVLYHVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCPLVPDTDSSDRGPPPPAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDATGEPKAKKPRYTDNKEPSPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTPSSAPYTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKSGDSGGGMFVINLHKALASLATATLESVIQERFGSRCARIFRLVLQKKHLEQKQVEDFAMIPAKEAKDMLYKMLSENFILLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIERRQFETKENKRLLEKSQRVEAIMASMQATGAEEVQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLLESYIESTMKRQ", "length": 533 }, "evidence": [ { "id": "F1SDD7", "url": "https://omabrowser.org/oma/group/F1SDD7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VG60-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC3", "gene_name": "Polr3C", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSADYSHLSSAILEQCFGKVVQAVADCLFSATTRTLGQITSATKLSRKEVAFALAVLVKFRLVDFAASKANPFLAEYALRREDVLCLLRYPRYVHLVQTKYGNVGASISEELINSGSDTATGILLKCLAENENKAESPESYRNTFLEMITDHYIIKRPELLVGDDQDENVPKFETNECDFFRHPNIDLQLLAKIQKGEATLAEARDSHMVWHLNHDRFHQDFRDTIMVDAIERKLGENAAECFKFILKIMYNTTDPWERKLSNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVYVVDMEHAFESLAFACVECVITERFGSKAARIFRVIRCKKYIEQEDLQKEAMIPSKEAKSLAYNLFQEQFIHVKIIKKPGGGSNGPAKAFYLFQVKEKDTVRMLLDASYKSLYNTIERSNFEKNEHKGLIEKSQRLDSIVEAMKERGETDEYIAEIVETFTPPECEILNKVKNRIKTLSKAELTLDDTIFLLQMYQHHCTTLPTGIRKFK", "length": 522 }, "evidence": [ { "id": "F1SDD7", "url": "https://omabrowser.org/oma/group/F1SDD7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SDD7", "url": "https://www.uniprot.org/uniprotkb/F1SDD7" } ], "pmid": "" }, { "name": "termination of RNA polymerase III transcription", "id": "GO:0006386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006386", "evidence": [ { "database": "UniProtKB", "id": "F1SDD7", "url": "https://www.uniprot.org/uniprotkb/F1SDD7" } ], "pmid": "" }, { "name": "positive regulation of innate immune response", "id": "GO:0045089", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045089", "evidence": [ { "database": "UniProtKB", "id": "F1SDD7", "url": "https://www.uniprot.org/uniprotkb/F1SDD7" } ], "pmid": "" }, { "name": "transcription initiation at RNA polymerase III promoter", "id": "GO:0006384", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006384", "evidence": [ { "database": "UniProtKB", "id": "F1SDD7", "url": "https://www.uniprot.org/uniprotkb/F1SDD7" } ], "pmid": "" }, { "name": "positive regulation of interferon-beta production", "id": "GO:0032728", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032728", "evidence": [ { "database": "UniProtKB", "id": "F1SDD7", "url": "https://www.uniprot.org/uniprotkb/F1SDD7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "single-stranded DNA binding", "id": "GO:0003697", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003697", "evidence": [ { "database": "UniProtKB", "id": "F1SDD7", "url": "https://www.uniprot.org/uniprotkb/F1SDD7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "RNA polymerase III complex", "id": "GO:0005666", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005666", "evidence": [ { "database": "UniProtKB", "id": "F1SDD7", "url": "https://www.uniprot.org/uniprotkb/F1SDD7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SDD7", "url": "https://www.uniprot.org/uniprotkb/F1SDD7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 505, "end_pos": 507, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDD7" }, { "id": "PF22536", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22536" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DNA-directed RNA polymerase III subunit RPC3 winged-helix", "eco_id": "ECO_0000259", "start_pos": 350, "end_pos": 426, "start_aa": "Leu", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SDD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDD7" }, { "id": "PF05645", "database": "Pfam", "url": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UQW4-1", "uniprot_ac": "A0A4X1UQW4", "uniprot_id": "A0A4X1UQW4_PIG", "mass": { "chemical_mass": 82541.0, "monoisotopic_mass": 82541.0 }, "refseq": {}, "gene_names": [ { "name": "CDH8", "type": "recommended", "evidence": [ { "id": "A0A4X1UQW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ] } ], "protein_names": [ { "name": "Cadherin 8", "type": "synonym", "evidence": [ { "id": "A0A4X1UQW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Cadherins are calcium-dependent cell adhesion proteins.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UUI4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUI4#function" }, { "database": "UniProtKB", "id": "RU004357", "url": "https://www.uniprot.org/uniprotkb/RU004357#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CDH8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4", "locus": { "chromosome": "6", "start_pos": 22923781, "end_pos": 23279241, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040687", "url": "https://www.ensembl.org/id/ENSSSCG00000040687" } ] } } ], "crossref": [ { "id": "A0A4X1UQW4", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1UQW4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100625758", "url": "https://www.ncbi.nlm.nih.gov/gene/100625758", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000233", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000233", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039808", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039808", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100625758", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625758", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IYMAPMA", "url": "https://omabrowser.org/oma/group/IYMAPMA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1UUI4", "url": "https://www.orthodb.org/?gene=A0A4X1UUI4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027:SF273", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027:SF273", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01049", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01049", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-418990", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418990", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UQW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UUI4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UUI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPERLSAMLLDLWTPLIILWITLPPCIYMAPMNQSPVLMSGSPLELNRLSEEQRILNRSKRGWVWNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDVTGDIHAIKRLDREEKAEYTLTAQAVDWETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGIIRLRKPLDFETKKSYTLKVEAANVHIDPRFSSRGPFKDTATVKIVVEDADEPPVFSSPTYLLEVHENAALNSVIGQVTARDPDITSSPIRFSIDRHTDLERQFNINADDGKITLATPLDRELSVWHNITIIATEIRNHSQISRVPVAIKVLDVNDNAPEFASEYEAFLCENGKPGQVIQTVSAMDKDDPKNGHYFLYSLLPEMVNNPNFTIKKNEDNSLSILAKHNGFNRQKQEVYLLPIIISDSGNPPLSSTSTLTIRVCGCSSDGVVQSCNVEAYVLPIGLSMGALIAILACIILLLVIVVLFVTLRRHKNEPLIIKDDEDVRENIIRYDDEGGGEEDTEAFDIATLQNPDGINGFLPRRGMPAQWWEERNPIQTGLFSGSRMTHSLHFIFSHKDTKINCITQRTT", "length": 744, "header": "tr|A0A4X1UQW4-1|A0A4X1UQW4_PIG Isoform 1 of Cadherin 8 OS=Sus scrofa OX=9823 GN=CDH8 PE=4 SV=1 CANONICAL=A0A4X1UQW4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UQW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4/entry#A0A4X1UQW4-1", "sequence": { "sequence": "MPERLSAMLLDLWTPLIILWITLPPCIYMAPMNQSPVLMSGSPLELNRLSEEQRILNRSKRGWVWNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDVTGDIHAIKRLDREEKAEYTLTAQAVDWETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGIIRLRKPLDFETKKSYTLKVEAANVHIDPRFSSRGPFKDTATVKIVVEDADEPPVFSSPTYLLEVHENAALNSVIGQVTARDPDITSSPIRFSIDRHTDLERQFNINADDGKITLATPLDRELSVWHNITIIATEIRNHSQISRVPVAIKVLDVNDNAPEFASEYEAFLCENGKPGQVIQTVSAMDKDDPKNGHYFLYSLLPEMVNNPNFTIKKNEDNSLSILAKHNGFNRQKQEVYLLPIIISDSGNPPLSSTSTLTIRVCGCSSDGVVQSCNVEAYVLPIGLSMGALIAILACIILLLVIVVLFVTLRRHKNEPLIIKDDEDVRENIIRYDDEGGGEEDTEAFDIATLQNPDGINGFLPRRGMPAQWWEERNPIQTGLFSGSRMTHSLHFIFSHKDTKINCITQRTT", "length": 744, "header": "tr|A0A4X1UQW4-1|A0A4X1UQW4_PIG Isoform 1 of Cadherin 8 OS=Sus scrofa OX=9823 GN=CDH8 PE=4 SV=1 CANONICAL=A0A4X1UQW4-1" }, "locus": { "chromosome": "6", "start_pos": 23264043, "end_pos": 22923784, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040497.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040497.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056334.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056334.2" } ] } }, { "isoform_ac": "A0A4X1UUI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4/entry#A0A4X1UUI4-1", "sequence": { "sequence": "MPERLSAMLLDLWTPLIILWITLPPCIYMAPMNQSPVLMSGSPLELNRLSEEQRILNRSKRGWVWNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDVTGDIHAIKRLDREEKAEYTLTAQAVDWETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGIIRLRKPLDFETKKSYTLKVEAANVHIDPRFSSRGPFKDTATVKIVVEDADEPPVFSSPTYLLEVHENAALNSVIGQVTARDPDITSSPIRFSIDRHTDLERQFNINADDGKITLATPLDRELSVWHNITIIATEIRNHSQISRVPVAIKVLDVNDNAPEFASEYEAFLCENGKPGQVIQTVSAMDKDDPKNGHYFLYSLLPEMVNNPNFTIKKNEDNSLSILAKHNGFNRQKQEVYLLPIIISDSGNPPLSSTSTLTIRVCGCSSDGVVQSCNVEAYVLPIGLSMGALIAILACIILLLVIVVLFVTLRRHKNEPLIIKDDEDVRENIIRYDDEGGGEEDTEAFDIATLQNPDGINGFLPRKDIKPDLQFMPRQGLAPVPNGVDVDEFINVRLHEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESATSDSDQNFDYLSDWGPRFKRLGELYSVGESDKET", "length": 799, "header": "tr|A0A4X1UUI4-1|A0A4X1UQW4_PIG Computationally mapped isoform of Cadherin 8 OS=Sus scrofa OX=9823 GN=CDH8 PE=4 SV=1 CANONICAL=A0A4X1UQW4-1" }, "locus": { "chromosome": "6", "start_pos": 23264043, "end_pos": 22924578, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063035.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063035.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058932.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058932.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UUI4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UUI4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625758", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625758", "resource": "KEGG Pathway" }, { "id": "R-SSC-418990", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418990", "resource": "Reactome", "description": "Adherens junctions interactions" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XVN0-1", "protein_name": "Cadherin 8", "gene_name": "CDH8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTGKLNGSCFYNLSYFYVDCAVNTWRSSCGTMPERLTEMLMDTWTPLIILWITVLPSIYMAPMNQSQVLPSGSSTGLKRLTEEQRILNRSKRGWVWNQMFVLEEFSGPEPILVGRLHTDLDPGSSKIKYILSGDGAGTIFVINDKTGDIHAMKRLDREEKAEYTLTAQAVDRDTNKPLEPPSEFIIKVQDINDNAPEFVDGPYHATVPEMSVVGTFVTKVTATDADDPVYGNSAKLVYSILEGQPYFSIEPHTAIIKTALPNMDREAKEEYFVVIQAKDMGGHMGGLSGTTTVTITLTDVNDNPPKFAQSLYHFSVMEDVALGEPIGRVKANDLDIGENAKSSYDIIEGDGMDIFEITTDAQTQDGVIRVRKPLDFETKKSYTLKVEAANIHIDPRFISGGPFKDTATVKIVVEDADEPPVFSSPTYLLEVHENAAINSVIGQVTAHDPDVSSSPIRFSIDRHTDLERQFNINAEDGKITLATPLDRETNMWHNITIVATETRNHSQVSRVPVTIKVLDVNDNAPEFASEHEAFLCENGKPGQVIQIVSAVDKDDPKNGHYFLYSLLPEMINNPNFTIKKNEDNTLSILAKHNGFSRQKQEVYLLPIIISDSGNPPMSSTSTLTIRVCGCSSDGIVQSCNVEAYVLPIGLSMGALIAILACIILLLVIVVLFVTLRRHKNEPLIIKDDEDVRENIIRYDDEGGGEEDTEAFDIATLQNPDGINGFLPRKDIKPDLQFMPRQGLAPVPNGVDVDEFINVRLHEADNDPTAPPYDSIQIYGYEGRGSAAGSLSSLESSASDSDQNFDYLSEWGPRFKRLGELYSVGESDKET", "length": 830 }, "evidence": [ { "id": "A0A4X1UQW4", "url": "https://omabrowser.org/oma/group/A0A4X1UQW4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9SDE0-1", "protein_name": "Cadherin 8", "gene_name": "CDH8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPERLAEMLLDLWTPLIILWITLPPCIYSAPMNQSPVLMSGSPLELNRLSEEQRILNRSKRGWVWNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDVTGDIHAIKRLDREEKAEYTLTAQAVDWETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGIIRLRKPLDFETKKSYTLKVEAANVHIDPRFSGRGPFKDTATVKIVVEDADEPPVFSSPTYLLEVHENAALNSVIGQVTARDPDITSSPIRFSIDRHTDLERQFNINADDGKITLATPLDRELSVWHNITIIATEIRNHSQISRVPVAIKVLDVNDNAPEFASEYEAFLCENGKPGQVIQTVSAMDKDDPKNGHYFLYSLLPEMVNNPNFTIKKNEDNSLSILAKHNGFNRQKQEVYLLPIIISDSGNPPLSSTSTLTIRVCGCSSDGVVQSCNVEAYVLPIGLSMGALIAILACIILLLVIVVLFVTLRRHKNEPLIIKDDEDVRENIIRYDDEGGGEEDTEAFDIATLQNPDGINGFLPRWGLPAQWWEERNLIRMGLFSGTRITLSLQFTFSHKDTKRNCVTQWTT", "length": 744 }, "evidence": [ { "id": "A0A4X1UQW4", "url": "https://omabrowser.org/oma/group/A0A4X1UQW4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P55286-1", "protein_name": "Cadherin-8", "gene_name": "CDH8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPERLAEMLLDLWTPLIILWITLPPCIYMAPMNQSQVLMSGSPLELNSLGEEQRILNRSKRGWVWNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDVTGDIHAIKRLDREEKAEYTLTAQAVDWETSKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGIIRLRKPLDFETKKSYTLKVEAANVHIDPRFSGRGPFKDTATVKIVVEDADEPPVFSSPTYLLEVHENAALNSVIGQVTARDPDITSSPIRFSIDRHTDLERQFNINADDGKITLATPLDRELSVWHNITIIATEIRNHSQISRVPVAIKVLDVNDNAPEFASEYEAFLCENGKPGQVIQTVSAMDKDDPKNGHYFLYSLLPEMVNNPNFTIKKNEDNSLSILAKHNGFNRQKQEVYLLPIIISDSGNPPLSSTSTLTIRVCGCSNDGVVQSCNVEAYVLPIGLSMGALIAILACIILLLVIVVLFVTLRRHKNEPLIIKDDEDVRENIIRYDDEGGGEEDTEAFDIATLQNPDGINGFLPRKDIKPDLQFMPRQGLAPVPNGVDVDEFINVRLHEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESTTSDSDQNFDYLSDWGPRFKRLGELYSVGESDKET", "length": 799 }, "evidence": [ { "id": "A0A4X1UQW4", "url": "https://omabrowser.org/oma/group/A0A4X1UQW4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P97291-1", "protein_name": "Cadherin-8", "gene_name": "Cdh8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPERLAETLMDLWTPLIILWITLPSCVYTAPMNQAHVLTTGSPLELSRQSEDMRILSRSKRGWVWNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVVEDADEPPVFSSPTYLLEVHENAALNSVIGQVTARDPDITSSPIRFSIDRHTDLERQFNINADDGKITLATPLDRELSVWHNITIIATEIRNHSQISRVPVAIKVLDVNDNAPEFASEYEAFLCENGKPGQVIQTVSAMDKDDPKNGHFFLYSLLPEMVNNPNFTIKKNEDNSLSILAKHNGFNRQKQEVYLLPIVISDSGNPPLSSTSTLTIRVCGCSNDGVVQSCNVEAYVLPIGLSMGALIAILACIILLLVIVVLFVTLRRHKNEPLIIKDDEDVRENIIRYDDEGGGEEDTEAFDIATLQNPDGINGFLPRKDIKPDLQFMPRQGLAPVPNGVDVDEFINVRLHEADNDPTAPPYDSIQIYGYEGRGSVAGSLSSLESTTSDSDQNFDYLSDWGPRFKRLGELYSVGESDKET", "length": 799 }, "evidence": [ { "id": "A0A4X1UQW4", "url": "https://omabrowser.org/oma/group/A0A4X1UQW4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "axon terminus", "id": "GO:0043679", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043679", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "synaptic cleft", "id": "GO:0043083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043083", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "catenin complex", "id": "GO:0016342", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016342", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "synaptic membrane", "id": "GO:0097060", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097060", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "cadherin binding", "id": "GO:0045296", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045296", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "beta-catenin binding", "id": "GO:0008013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008013", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "cell morphogenesis", "id": "GO:0000902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000902", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "cell-cell junction assembly", "id": "GO:0007043", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007043", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "adherens junction organization", "id": "GO:0034332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034332", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules", "id": "GO:0016339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016339", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "regulation of synapse organization", "id": "GO:0050807", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050807", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" }, { "name": "cell-cell adhesion mediated by cadherin", "id": "GO:0044331", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044331", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UQW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" }, { "start_pos": 463, "end_pos": 465, "annotation": "n_glycosylation_sequon" }, { "start_pos": 473, "end_pos": 475, "annotation": "n_glycosylation_sequon" }, { "start_pos": 544, "end_pos": 546, "annotation": "n_glycosylation_sequon" }, { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A4X1UQW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UQW4" }, { "id": "PS50268", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50268" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cadherin", "eco_id": "ECO_0000259", "start_pos": 87, "end_pos": 167, "start_aa": "Thr", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 188, "end_pos": 190 }, { "start_pos": 33, "end_pos": 35 }, { "start_pos": 463, "end_pos": 465 }, { "start_pos": 473, "end_pos": 475 }, { "start_pos": 544, "end_pos": 546 }, { "start_pos": 57, "end_pos": 59 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF07531", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-674695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-674695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6804756", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73776", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73776", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73779", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73779", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75953", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75953", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-76042", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76042", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2Q9F4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9F4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9F4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9F4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBA4", "url": "https://www.uniprot.org/uniprotkb/F1SBA4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBA4-1", "url": "https://www.uniprot.org/uniprotkb/F1SBA4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPAGLTEPTGAAPPASVGASGTVTMAPAAALPVRVESTPVALGAVTKAPVSVCVESTASQPLRSPIGTLVTKVAPVSALPKLSSGPRLPAPQIVAVKAPNTTTIQLPANLQLPPGTVLIKSNSGQLMLVSPQQAVTRTEATGNITSRPAVPMNTQTVKICTMPNSSSQLIKKVAVAPVKQLAQVGTTVVTTVPKPSPVQSAAVPTTVTPVKPLNTVTTLKPSSLGASSAPSNEPDLKAENSAAAQANLSPTMLENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLLDAKIEAEEFTRQLYVELKSSPQPHLVPFLKKSVIALRQLLPNSQSFIQQCVQQTSSEVVIATCTTTVTPSPVVTTAVSSIQPEKSIVGSEAATPGTVSVQTLNPLAGPGAAKTGVVTLHSVGPAAVPGGTTAGTVVLQTPKPLVTSLQNTVTTVSLQPEKPVVSGAAVGAAVTLALPSVTFGETSAAALCLPSVKPVVTSAGTTSDKPVIGAPVQIKLAQPGPILAQPAGIPQAVKVKQLFLLFQVVQQPSGGLAKQVTTLSHSSALTIQKSGQKTVTVSTAIPASQFPQASILKQITLPGNKILSLQSPIQKNKIKENGTTSFRDEDDINDVTSMAGVNLSEENACILAANSELVGTLVQSCKDEPFLFIGALQKRILDIGKKHDITEFNSDAVNLISHATQERLRGLLEKLTTIAQHRMTTYKASENYILSNDTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQIQHRDANLTALAAIGPRKKRPLESGSGSEGLKDNLFASGTSSLTATKQLLRPRITRICLRDLIFCMEQEREMKYSRALYLALLK", "length": 869, "header": "tr|F1SBA4-1|F1SBA4_PIG Isoform 1 of TATA-box binding protein associated factor 4b OS=Sus scrofa 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"MCFVRPPAPLPAGEEAGCALRPDGVCGVAVGYPLDTVKVRIQTEPKYTGIWHCIRDTYRQERVRGFYRGLSLPVCTVSLVSSVSFGTYRHCLAHICRFRYGSADAKAAKTDITLSGFASGLVRVFLTSPTEVAKVRLQTQTQTQTTQQRRPSASGPSAVPPPCPAPPARSAPGPKYRGPLHCLATVAREEGLRGLYKGSSALLLRDGHSFATYFLSYAILCEWLTPAGRSQPDVLGVLVAGGCAGVLAWAVATPMDVIKSRLQADGQGQRRYRGLLHCVVTSVREEGPQVLFKGLSLNCCRAFPVNMAVFVAYEVVLRLTRGLLT", "length": 325, "header": "tr|F1SAP2-1|F1SAP2_PIG Isoform 1 of Solute carrier family 25 member 47 OS=Sus scrofa OX=9823 GN=SLC25A47 PE=3 SV=2 CANONICAL=F1SAP2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QEA1-1", "url": "https://www.uniprot.org/uniprotkb/F1SAP2/entry#A0A5G2QEA1-1", "sequence": { "sequence": "MDFVAGAIGGVCGVAVGYPLDTVKVRIQTEPKYTGIWHCIRDTYRQERVRGFYRGLSLPVCTVSLVSSVSFGTYRHCLAHICRFRYGSADAKAAKTDITLSGFASGLVRVFLTSPTEVAKVRLQTQTQTQTTQQRRPSASGPSAVPPPCPAPPARSAPGPKYRGPLHCLATVAREEGLRGLYKGSSALLLRDGHSFATYFLSYAILCEWLTPAGRSQPDVLGVLVAGGCAGVLAWAVATPMDVIKSRLQADGQGQRRYRGLLHCVVTSVREEGPQVLFKGLSLNCCRAFPVNMAVFVAYEVVLRLTRGLLT", "length": 311, "header": "tr|A0A5G2QEA1-1|F1SAP2_PIG Computationally mapped isoform of Solute carrier family 25 member 47 OS=Sus scrofa OX=9823 GN=SLC25A47 PE=3 SV=1 CANONICAL=F1SAP2-1" }, "locus": { "chromosome": "7", "start_pos": 121209810, "end_pos": 121204336, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066628.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066628.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062498.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062498.1" } ] } }, { "isoform_ac": "F1SAP2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAP2/entry#F1SAP2-1", "sequence": { "sequence": "MCFVRPPAPLPAGEEAGCALRPDGVCGVAVGYPLDTVKVRIQTEPKYTGIWHCIRDTYRQERVRGFYRGLSLPVCTVSLVSSVSFGTYRHCLAHICRFRYGSADAKAAKTDITLSGFASGLVRVFLTSPTEVAKVRLQTQTQTQTTQQRRPSASGPSAVPPPCPAPPARSAPGPKYRGPLHCLATVAREEGLRGLYKGSSALLLRDGHSFATYFLSYAILCEWLTPAGRSQPDVLGVLVAGGCAGVLAWAVATPMDVIKSRLQADGQGQRRYRGLLHCVVTSVREEGPQVLFKGLSLNCCRAFPVNMAVFVAYEVVLRLTRGLLT", "length": 325, "header": "tr|F1SAP2-1|F1SAP2_PIG Isoform 1 of Solute carrier family 25 member 47 OS=Sus scrofa OX=9823 GN=SLC25A47 PE=3 SV=2 CANONICAL=F1SAP2-1" }, "locus": { "chromosome": "7", "start_pos": 121209810, "end_pos": 121192459, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002793.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002793.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002722.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002722.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEA1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEA1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515556", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515556", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1N156-1", "protein_name": "Solute carrier family 25 member 47", "gene_name": "SLC25A47", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDFVAGAIGGVCGVAVGYPLDTVKVRIQTEAKYTGIWDCVRDTYHRERVRGFYRGLSLPVCTVSLVSSVSFGTYRHCLAHICRVRYGSADAKPAKTDITLSGFASGLVRVFLTSPTEVAKVRLQTQTQAQQRRRPSASGPLVPLAAPPPCPVPPAGPLPGPRYRGPLHCLATVAREEGLRGLYKGSSALLFRDGHSFATYFLSYATLCEWLTPAGQSRPDVSGVLVAGGCAGALAWAVATPMDVIKARLQADGRGRQRYRGLLHCVLTSVREEGLRVLFKGLLLNCCRAFPVNMVVFVAYEAVLRLTRGLLT", "length": 312 }, "evidence": [ { "id": "F1SAP2", "url": "https://omabrowser.org/oma/group/F1SAP2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P38087-1", "protein_name": "Carrier protein YMC2, mitochondrial", "gene_name": "YMC2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSEEFPTPQLLDELEDQQKVTTPNEKRELSSNRVLKDIFAGTIGGIAQVLVGQPFDTTKVRLQTATTRTTTLEVLRNLVKNEGVFAFYKGALTPLLGVGICVSVQFGVNEAMKRFFQNYNASKNPNMSSQDVDLSRSNTLPLSQYYVCGLTGGVVNSFLASPIEQIRIRLQTQTSNGGDREFKGPWDCIKKLKAQGGLMRGLFPTMIRAGHGLGTYFLVYEALVAREIGTGLTRNEIPPWKLCLFGAFSGTMLWLTVYPLDVVKSIIQNDDLRKPKYKNSISYVAKTIYAKEGIRAFFKGFGPTMVRSAPVNGATFLTFELVMRFLGEE", "length": 329 }, "evidence": [ { "id": "F1SAP2", "url": "https://omabrowser.org/oma/group/F1SAP2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q6IS41-1", "protein_name": "Solute carrier family 25 member 47", "gene_name": "Slc25a47", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFVAGAIGGVCGVAVGYPLDTVKVRIQTEAKYAGIWHCIRDTYRQERVWGFYRGLSLPVCTVSLVSSVSFGTYHHCLAHICRFRYGSTDAKPTKADITLSGCASGLVRVFLTSPTEVAKVRLQTQTQAQTQQRRSSASWTSGAPALCPTPTACLEPRPKYSGPLHCLVTVAREEGLRGLYKGSSALLLREGHSFATYFLSYAMLCEWLTPAGHSQPDVLGVLVAGGCAGVLAWAVATPMDVIKSRLQADGQGQHRYRGLLHCVVTSVREEGPRVLFKGLALNCCRAFPVNMVVFVAYEAVLRLTQSLLT", "length": 310 }, "evidence": [ { "id": "F1SAP2", "url": "https://omabrowser.org/oma/group/F1SAP2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6Q0C1-1", "protein_name": "Solute carrier family 25 member 47", "gene_name": "SLC25A47", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDFVAGAIGGVCGVAVGYPLDTVKVRIQTEPKYTGIWHCVRDTYHRERVWGFYRGLSLPVCTVSLVSSVSFGTYRHCLAHICRLRYGNPDAKPTKADITLSGCASGLVRVFLTSPTEVAKVRLQTQTQAQKQQRRLSASGPLAVPPMCPVPPACPEPKYRGPLHCLATVAREEGLCGLYKGSSALVLRDGHSFATYFLSYAVLCEWLSPAGHSRPDVPGVLVAGGCAGVLAWAVATPMDVIKSRLQADGQGQRRYRGLLHCMVTSVREEGPRVLFKGLVLNCCRAFPVNMVVFVAYEAVLRLARGLLT", "length": 308 }, "evidence": [ { "id": "F1SAP2", "url": "https://omabrowser.org/oma/group/F1SAP2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrial outer membrane", "id": "GO:0005741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005741", "evidence": [ { "database": "UniProtKB", "id": "F1SAP2", "url": "https://www.uniprot.org/uniprotkb/F1SAP2" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SAP2", "url": "https://www.uniprot.org/uniprotkb/F1SAP2" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SAP2", "url": "https://www.uniprot.org/uniprotkb/F1SAP2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "transmembrane transport", "id": "GO:0055085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055085", "evidence": [ { "database": "UniProtKB", "id": "F1SAP2", "url": "https://www.uniprot.org/uniprotkb/F1SAP2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F1SAP2", "url": "https://www.uniprot.org/uniprotkb/F1SAP2" } ], "pmid": "" }, { "name": "acetyl-CoA transmembrane transporter activity", "id": "GO:0008521", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008521", "evidence": [ { "database": "UniProtKB", "id": "F1SAP2", "url": "https://www.uniprot.org/uniprotkb/F1SAP2" } ], "pmid": "" }, { "name": "NAD transmembrane transporter activity", "id": "GO:0051724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051724", "evidence": [ { "database": "UniProtKB", "id": "F1SAP2", "url": "https://www.uniprot.org/uniprotkb/F1SAP2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "65408", "name": "", "equation": "NAD(+)(in) = NAD(+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "65408", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/65408" } ] }, { "id": "75039", "name": "", "equation": "acetyl-CoA(in) = acetyl-CoA(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "75039", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/75039" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAP2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 325, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAP2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAP2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SDC4-1", "uniprot_ac": "F1SDC4", "uniprot_id": "F1SDC4_PIG", "mass": { "chemical_mass": 50600.0, "monoisotopic_mass": 50600.0 }, "refseq": { "ac": "XP_013836817", "name": "aldehyde dehydrogenase, dimeric NADP-preferring", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013836817" }, "gene_names": [ { "name": "ALDH3A1", "type": "recommended", "evidence": [ { "id": "F1SDC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDC4" } ] }, { "name": "ALDH3A1", "type": "synonym", "evidence": [ { "id": "XP_013836817", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013836817" } ] } ], "protein_names": [ { "name": "Aldehyde dehydrogenase", "type": "recommended", "evidence": [ { "id": "F1SDC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDC4/entry#names_and_taxonomy" } ] }, { "name": "aldehyde dehydrogenase, dimeric NADP-preferring", "type": "synonym", "evidence": [ { "id": "XP_013836817", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013836817" } ] } ], "function": [ { "annotation": "ALDHs play a major role in the detoxification of alcohol-derived acetaldehyde. They are involved in the metabolism of corticosteroids, biogenic amines, neurotransmitters, and lipid peroxidation. Oxidizes medium and long chain aldehydes into non-toxic fatty acids. Preferentially oxidizes aromatic aldehyde substrates. Comprises about 50 percent of corneal epithelial soluble proteins. May play a role in preventing corneal damage caused by ultraviolet light.", "evidence": [ { "database": "UniProtKB", "id": "F1SDC4", "url": "https://www.uniprot.org/uniprotkb/F1SDC4#function" }, { "database": "UniProtKB", "id": "ARBA00045468", "url": "https://www.uniprot.org/uniprotkb/ARBA00045468#function" }, { "database": "UniProtKB", "id": "A0A5G2QH07", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH07#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDC4", "url": "https://www.uniprot.org/uniprotkb/F1SDC4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ALDH3A1", "url": "https://www.uniprot.org/uniprotkb/F1SDC4", "locus": { "chromosome": "12", "start_pos": 59905897, "end_pos": 59897496, "strand": "-", "evidence": [ { "database": "Ensembl Gene", 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[ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAT8", "url": "https://www.uniprot.org/uniprotkb/F1SAT8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CD93", "url": "https://www.uniprot.org/uniprotkb/F1SAT8", "locus": { "chromosome": "17", "start_pos": 30233933, "end_pos": 30239692, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007116", "url": "https://www.ensembl.org/id/ENSSSCG00000007116" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007116", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007116", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155660", "url": "https://www.ncbi.nlm.nih.gov/gene/100155660", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018097", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018097", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026823", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026823", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051505", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051505", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YTNWHKE", "url": "https://omabrowser.org/oma/group/YTNWHKE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAT8", "url": "https://www.orthodb.org/?gene=F1SAT8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14789", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14789", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14789:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14789:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07645", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07645", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12662", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12662", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003359965", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003359965", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QP56", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP56-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP56-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAT8", "url": "https://www.uniprot.org/uniprotkb/F1SAT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAT8-1", "url": "https://www.uniprot.org/uniprotkb/F1SAT8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTSPGLLLLLLLLLVQPREGATSQEAVVCVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTLAQLLQPGAPLAERMGRFWIGLQRDKGKCLDSDLPLKGFRWVDGVEDTPYTNWHKEAKNSCISKRCVSLLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGPGQVTYTTPFQATSSTLQAVPFGSMAHVACGDRDESQQPYFLCKEKAPNVFEWNSSGPLCISPKLGCDFNNGGCEQDCFEGGDGSFRCGCRPGYRLLDDLVSCASRNPCSSSPCRGGATCVPVQLGKDFRCHCPPGYQLDLTGRDCVDVDECQDAPCTQECVNTPGSFRCECWVGYEPGGPGEGACQDVDECAPGRSPCAQGCTNTIGSFSCSCEDGYILAGEEGTQCLDLDECEGQGARRCGGLCLNTEGSFRCGCLPGWELAPDGVSCTGGPTSPAPSAGTPQVQDTGDGEGEHVSSATASSPTGDPEGTSETTWVVPTTGRSSLPRHVRTSLAPPEMLVPSGTRSVWSPVGPLATPGQRESTGDDFTAKHSDSGTDGQKLLLFYILGTVVAILLLLALALGLLVYRKRRAKREEKEKPKNAADSYAWVPERAESRAAENPYSPTPGTDC", "length": 646, "header": "tr|F1SAT8-1|F1SAT8_PIG Isoform 1 of CD93 molecule OS=Sus scrofa OX=9823 GN=CD93 PE=1 SV=2 CANONICAL=F1SAT8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QP56-1", "url": "https://www.uniprot.org/uniprotkb/F1SAT8/entry#A0A5G2QP56-1", "sequence": { "sequence": "MTTSPGLLLLLLLLLLHCDKKGGNLATLKSEEEARHVQGTLAQLLQPGAPLAERMGRFWIGLQRDKGKCLDSDLPLKGFRWVDGVEDTPYTNWHKEAKNSCISKRCVSLLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGPGQVTYTTPFQATSSTLQAVPFGSMAHVACGDRDESQQPYFLCKEKAPNVFEWNSSGPLCISPKLGCDFNNGGCEQDCFEGGDGSFRCGCRPGYRLLDDLVSCASRNPCSSSPCRGGATCVPVQLGKDFRCHCPPGYQLDLTGRDCVDVDECQDAPCTQECVNTPGSFRCECWVGYEPGGPGEGACQDVDECAPGRSPCAQGCTNTIGSFSCSCEDGYILAGEEGTQCLDLDECEGQGARRCGGLCLNTEGSFRCGCLPGWELAPDGVSCTGGPTSPAPSAGTPQVQDTGDGEGEHVSSATASSPTGDPEGTSETTWVVPTTGRSSLPRHVRTSLAPPEMLVPSGTRSVWSPVGPLATPGQRESTGDDFTAKHSDSGTDGQKLLLFYILGTVVAILLLLALALGLLVYRKRRAKREEKEKPKNAADSYAWVPERAESRAAENPYSPTPGTDC", "length": 612, "header": "tr|A0A5G2QP56-1|F1SAT8_PIG Computationally mapped isoform of CD93 molecule OS=Sus scrofa OX=9823 GN=CD93 PE=1 SV=1 CANONICAL=F1SAT8-1" }, "locus": { "chromosome": "17", "start_pos": 30239592, "end_pos": 30237520, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074939.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074939.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066678.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066678.1" } ] } }, { "isoform_ac": "F1SAT8-1", "url": "https://www.uniprot.org/uniprotkb/F1SAT8/entry#F1SAT8-1", "sequence": { "sequence": "MTTSPGLLLLLLLLLVQPREGATSQEAVVCVGTACYSAHWGKLSADEAQLHCDKKGGNLATLKSEEEARHVQGTLAQLLQPGAPLAERMGRFWIGLQRDKGKCLDSDLPLKGFRWVDGVEDTPYTNWHKEAKNSCISKRCVSLLLDLSTPALASRLSKWAEGPCGSSRSPGNSVEGFVCKFSFKGMCRPLALGGPGQVTYTTPFQATSSTLQAVPFGSMAHVACGDRDESQQPYFLCKEKAPNVFEWNSSGPLCISPKLGCDFNNGGCEQDCFEGGDGSFRCGCRPGYRLLDDLVSCASRNPCSSSPCRGGATCVPVQLGKDFRCHCPPGYQLDLTGRDCVDVDECQDAPCTQECVNTPGSFRCECWVGYEPGGPGEGACQDVDECAPGRSPCAQGCTNTIGSFSCSCEDGYILAGEEGTQCLDLDECEGQGARRCGGLCLNTEGSFRCGCLPGWELAPDGVSCTGGPTSPAPSAGTPQVQDTGDGEGEHVSSATASSPTGDPEGTSETTWVVPTTGRSSLPRHVRTSLAPPEMLVPSGTRSVWSPVGPLATPGQRESTGDDFTAKHSDSGTDGQKLLLFYILGTVVAILLLLALALGLLVYRKRRAKREEKEKPKNAADSYAWVPERAESRAAENPYSPTPGTDC", "length": 646, "header": "tr|F1SAT8-1|F1SAT8_PIG Isoform 1 of CD93 molecule OS=Sus scrofa OX=9823 GN=CD93 PE=1 SV=2 CANONICAL=F1SAT8-1" }, "locus": { "chromosome": "17", "start_pos": 30239592, "end_pos": 30237520, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007788.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007788.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007579.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007579.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 469, "start_aa": "Thr", "end_pos": 469, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr469", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 552, "start_aa": "Thr", "end_pos": 552, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr552", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 641, "start_aa": "Thr", "end_pos": 641, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr641", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP56", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP56" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HEG2-1", "protein_name": "Complement component C1q receptor", "gene_name": "Cd93", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTTSTGLLLLLLLLGQSWAGAAADSEAVVCQGTACYTAHWGKVSFTEAQSSCHENGGNLATVKSEEEARYVQQALAQLLKTKEPLEAKMRKFWIGLQREKGKCTYYDLPLKGFSWVGGGEDTAYSNWYKEGKRSCTSNRCVSLILDLPLPPHPSQLPRWYETSCGTPDGNSIEGFLCKFNFKGMCSPLALGGPGQVTYTTPFQATTSSLEAVPFASAANVVCGDEAESKTYYFLCKEKTAGVFHWGSSGPLCISPKLGCSFNNGGCQQDCFEGGDGSFRCGCRPGFRLLDDLVTCASRNPCSSNPCTGGGTCHPVPLSENYTCQCPKGYQLDSSQVHCVDIDECQESPCAQECINTPGSFRCECWVGYQSSGPKEATSCEDVDECAHSPCAHRCINTDGSFYCDCKDGYALSGEDSTQCEDIDECSDSRGSPCDTRCVNSEGSFTCGCQSGWELAPNGVSCIKGSVSLEPSTSSPQKEGKGDRKGNTVPPTDMPSSSRGSENVSKGGYPTGRPSLGSDTPSASVPPEIPVPSEASDVWMELDTHLPMTTGYSKPTHEDSVAAHSDSDTDGQKLLLFYILGTVVAISLLLALALGLLIYRKRRAKKEEIKEKKPQNAADSYSWVPERAESRALENQYSPTPGTDC", "length": 644 }, "evidence": [ { "id": "F1SAT8", "url": "https://omabrowser.org/oma/group/F1SAT8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0Z9M8-1", "protein_name": "CD93 molecule", "gene_name": "CD93", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAVALLLLLLQLLMLVTAVAGGEDAKVLCADTACYTLHRAELGWSAAQERCQNDGGNLAPAGSRAEAERLEQLLADSMATSAWIGLRLERGHCVQSQEPLRGFSWAASGEPSNYSAWLAEPHVTCLSTRCVALRPAGPHGPLGWVDRPCRATLPAFLCKFSFRGMCGPLRLGGPGQVSYETPFRVSSPTLGAAPFGTLAEVVCEGSVSSTFSVCKGQQEGDDFTWHPPGPICPNTCTHNNGGCQQLCLEEQPGKPSLCACQPNYVLGPDMASCLPEDPCHSNPCQGTCRPQPGGFECICEAGYIVAPDGYRCVDVDECLEGPCKHECHNTAGSFFCSCQPGYQPAGPDGHDCRDEDECAQPNACPQLCLNIAGSFRCLCKAGYQQQPGSDACLDIDECLRNPCPGPCRNLPGSFECICLPGFLPQDDGHGCLTAPTTGEQLAGTMGTTAILQTASTAWTVGTPSPAAIPGGLAPPAPTVVVSEHSPEHGADGPRLLLYYILGSLVAILLLLAFALALLACRKRASRQEKTKAKSAADNYCWVPEQPESRSRAGSERR", "length": 557 }, "evidence": [ { "id": "F1SAT8", "url": "https://omabrowser.org/oma/group/F1SAT8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BGJ5-1", "protein_name": "CD93 molecule", "gene_name": "CD93", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASSAGLLLLLLLLSIQSRAENTTDWEAVVCAGSACYTAHRHKLSAEDAQLHCSKKGGNLATVKSEEEAWHIQGALTQLLLLGPPLQERSKFWIGLQREKGTCSDSSLPLKGFSWLGDGEDSQYNNWYKEVRSTCTHRRCVSLILDLSVPGLASGLSKWVDGPCGHSGFPGMNIEGFVCKFSFKGMCRPLTLGGPGQVNYTTPFQATSSSLQAVPFASMATVACEDGNEGRQHYFLCKEKAPSEFDWDSSGPLCVSPKFGCDFNNGGCQQDCFEGGDGSFRCGCRPGFRLLDDLVSCASRNPCSSNPCGGEATCFPGSLGTDFTCHCPPGYQLDSTQRDCVDVDECRDNPCAQDCVNTPGSFRCECWVGFEPGGPEEGACVDVDECAPGHSPCAQSCTNTEGSFYCSCEEGYELAEEDGTQCLDVDECEVQQGGLCDSLCFNTEGSFRCGCLPGWELDPNGVSCTGGHTSLGPPTGFPLREDTGNGEGKLQSSATVSSRSGDNPEGTSTVVPSNRRLSLPARVPTSLPPSEMLAPSATPGVWMEPSTHYPTATTGHRESAGEDFTAKQSEQGTDGQQLLLFYILGTVVAILLLLALALGLLVCRKRRAKKEEKKQQPQSAADSYAWVPERAESRAMENPYSPTPGTDC", "length": 648 }, "evidence": [ { "id": "F1SAT8", "url": "https://omabrowser.org/oma/group/F1SAT8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O89103-1", "protein_name": "Complement component C1q receptor", "gene_name": "Cd93", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAISTGLFLLLGLLGQPWAGAAADSQAVVCEGTACYTAHWGKLSAAEAQHRCNENGGNLATVKSEEEARHVQQALTQLLKTKAPLEAKMGKFWIGLQREKGNCTYHDLPMRGFSWVGGGEDTAYSNWYKASKSSCIFKRCVSLILDLSLTPHPSHLPKWHESPCGTPEAPGNSIEGFLCKFNFKGMCRPLALGGPGRVTYTTPFQATTSSLEAVPFASVANVACGDEAKSETHYFLCNEKTPGIFHWGSSGPLCVSPKFGCSFNNGGCQQDCFEGGDGSFRCGCRPGFRLLDDLVTCASRNPCSSNPCTGGGMCHSVPLSENYTCRCPSGYQLDSSQVHCVDIDECQDSPCAQDCVNTLGSFHCECWVGYQPSGPKEEACEDVDECAAANSPCAQGCINTDGSFYCSCKEGYIVSGEDSTQCEDIDECSDARGNPCDSLCFNTDGSFRCGCPPGWELAPNGVFCSRGTVFSELPARPPQKEDNDDRKESTMPPTEMPSSPSGSKDVSNRAQTTGLFVQSDIPTASVPLEIEIPSEVSDVWFELGTYLPTTSGHSKPTHEDSVSAHSDTDGQNLLLFYILGTVVAISLLLVLALGILIYHKRRAKKEEIKEKKPQNAADSYSWVPERAESQAPENQYSPTPGTDC", "length": 644 }, "evidence": [ { "id": "F1SAT8", "url": "https://omabrowser.org/oma/group/F1SAT8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ET61-1", "protein_name": "Complement component C1q receptor", "gene_name": "Cd93", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVTSTGLLLLLGLLGQLWAGAAADSEAVVCEGTACYTAHWGKLSAAEAQHRCNENGGNLATVKSEEEARHVQEALAQLLKTKAPSETKIGKFWIGLQREKGKCTYHDLPMKGFSWVGGGEDTTYSNWYKASKSSCISKRCVSLILDLSLKPHPSHLPKWHESPCGTPDAPGNSIEGFLCKFNFKGMCSPLALGGPGQLTYTTPFQATTSSLKAVPFASVANVVCGDEAESKTNYYLCKETTAGVFHWGSSGPLCVSPKFGCSFNNGGCQQDCFEGGDGSFRCGCRPGFRLLDDLVTCASRNPCSSNPCTGGGMCHSVPLSENYTCHCPRGYQLDSSQVHCVDIDECEDSPCDQECINTPGGFHCECWVGYQSSGSKEEACEDVDECTAAYSPCAQGCTNTDGSFYCSCKEGYIMSGEDSTQCEDIDECLGNPCDTLCINTDGSFRCGCPAGFELAPNGVSCTRGSMFSELPARPPQKEDKGDGKESTVPLTEMPGSLNGSKDVSNRAQTTDLSIQSDSSTASVPLEIEVSSEASDVWLDLGTYLPTTSGHSQPTHEDSVPAHSDSDTDGQKLLLFYILGTVVAISLLLALALGLLIYLKRKAKKEEIKEKKAQNAADSYSWIPERAESRAPENQYSPTPGTDC", "length": 643 }, "evidence": [ { "id": "F1SAT8", "url": "https://omabrowser.org/oma/group/F1SAT8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9NPY3-1", "protein_name": "Complement component C1q receptor", "gene_name": "CD93", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATSMGLLLLLLLLLTQPGAGTGADTEAVVCVGTACYTAHSGKLSAAEAQNHCNQNGGNLATVKSKEEAQHVQRVLAQLLRREAALTARMSKFWIGLQREKGKCLDPSLPLKGFSWVGGGEDTPYSNWHKELRNSCISKRCVSLLLDLSQPLLPSRLPKWSEGPCGSPGSPGSNIEGFVCKFSFKGMCRPLALGGPGQVTYTTPFQTTSSSLEAVPFASAANVACGEGDKDETQSHYFLCKEKAPDVFDWGSSGPLCVSPKYGCNFNNGGCHQDCFEGGDGSFLCGCRPGFRLLDDLVTCASRNPCSSSPCRGGATCVLGPHGKNYTCRCPQGYQLDSSQLDCVDVDECQDSPCAQECVNTPGGFRCECWVGYEPGGPGEGACQDVDECALGRSPCAQGCTNTDGSFHCSCEEGYVLAGEDGTQCQDVDECVGPGGPLCDSLCFNTQGSFHCGCLPGWVLAPNGVSCTMGPVSLGPPSGPPDEEDKGEKEGSTVPRAATASPTRGPEGTPKATPTTSRPSLSSDAPITSAPLKMLAPSGSPGVWREPSIHHATAASGPQEPAGGDSSVATQNNDGTDGQKLLLFYILGTVVAILLLLALALGLLVYRKRRAKREEKKEKKPQNAADSYSWVPERAESRAMENQYSPTPGTDC", "length": 652 }, "evidence": [ { "id": "F1SAT8", "url": "https://omabrowser.org/oma/group/F1SAT8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SAT8", "url": "https://www.uniprot.org/uniprotkb/F1SAT8" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SAT8", "url": "https://www.uniprot.org/uniprotkb/F1SAT8" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SAT8", "url": "https://www.uniprot.org/uniprotkb/F1SAT8" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SAT8", "url": "https://www.uniprot.org/uniprotkb/F1SAT8" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F1SAT8", "url": "https://www.uniprot.org/uniprotkb/F1SAT8" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "F1SAT8", "url": "https://www.uniprot.org/uniprotkb/F1SAT8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SAT8", "url": "https://www.uniprot.org/uniprotkb/F1SAT8" } ], "pmid": "" }, { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", 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"categories": [ "Protein Classification" ] }, { "id": "IPR013216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051419", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051419", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627224", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627224", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1US11", "url": "https://www.orthodb.org/?gene=A0A4X1US11", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12176", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12176", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12176:SF80", "url": 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"MASPRASTPLPELPEKNSGYREVQYWDQRYQGAADSAPYEWFGDFSSFRDLLEPELRPEDRILVLGCGNSALSYELFLGGFPDVTSVDYSSVVVDAMRARYAHVPKLRWETMDVRALGFPSESFNVVLEKGTLDALLTGEQDPWIVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRARHYAQTRYGWSLRHATYGSGFHFHFYLMHKGGELSVAQLALGAQILSPPRPPTPPCFLSDSDHEEFLSAIQL", "length": 255, "header": "tr|A0A4X1US11-1|A0A4X1US11_PIG Isoform 1 of EEF1A lysine methyltransferase 4 OS=Sus scrofa OX=9823 GN=EEF1AKMT4 PE=3 SV=1 CANONICAL=A0A4X1US11-1" }, "isoforms": [ { "isoform_ac": "A0A4X1US11-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1US11/entry#A0A4X1US11-1", "sequence": { "sequence": "MASPRASTPLPELPEKNSGYREVQYWDQRYQGAADSAPYEWFGDFSSFRDLLEPELRPEDRILVLGCGNSALSYELFLGGFPDVTSVDYSSVVVDAMRARYAHVPKLRWETMDVRALGFPSESFNVVLEKGTLDALLTGEQDPWIVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRARHYAQTRYGWSLRHATYGSGFHFHFYLMHKGGELSVAQLALGAQILSPPRPPTPPCFLSDSDHEEFLSAIQL", "length": 255, "header": "tr|A0A4X1US11-1|A0A4X1US11_PIG Isoform 1 of EEF1A lysine methyltransferase 4 OS=Sus scrofa OX=9823 GN=EEF1AKMT4 PE=3 SV=1 CANONICAL=A0A4X1US11-1" }, "locus": { "chromosome": "13", "start_pos": 122155433, "end_pos": 122148982, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098220.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098220.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078778.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078778.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 236, "start_aa": "Thr", "end_pos": 236, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr236", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ 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"species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UT36", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT36" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PSMD5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT36", "locus": { "chromosome": "1", "start_pos": 260846563, "end_pos": 260868766, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005507", "url": "https://www.ensembl.org/id/ENSSSCG00000005507" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005507", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005507", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155007", "url": "https://www.ncbi.nlm.nih.gov/gene/100155007", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019538", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019538", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155007", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155007", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WGQEYIS", "url": "https://omabrowser.org/oma/group/WGQEYIS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1UT36", "url": "https://www.orthodb.org/?gene=A0A4X1UT36", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13554", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13554", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13554:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13554:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10508", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10508", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9907900", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9907900", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020923822", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923822", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1USW6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USW6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1USW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USW6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1USX1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1USX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UT36", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UT36-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT36-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG81", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG81-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG81-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FQF4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FQF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQF4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L9N5", "url": "https://www.uniprot.org/uniprotkb/I3L9N5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L9N5-1", "url": "https://www.uniprot.org/uniprotkb/I3L9N5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAQVLALLREVSRLEAPLEELRALQSVLQSVPLSELREHAAELHLGPLFSLLNENHREQTTLCVSILERLLQALEPVHVARNLKVDLQRGLTHTNDSVKILTLSQVGRIVDNSDAVTEILNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDIVRYRVYELIVEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAIMDSPQQICERYPVFVEKVFEMTESQDPTMIGVAVDTIGILGSNVEGKQVLQKTGTRFERLLMKIGYQAKNASTELKIRCLDAVSSLFYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISNQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVMDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLRLRTYLSEGPYYVKPISTTAVEGAE", "length": 504, "header": "tr|A0A4X1UT36-1|A0A4X1UT36_PIG Isoform 1 of 26S proteasome non-ATPase regulatory subunit 5 OS=Sus scrofa OX=9823 GN=PSMD5 PE=1 SV=1 CANONICAL=A0A4X1UT36-1" }, "isoforms": [ { "isoform_ac": "A0A4X1USW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT36/entry#A0A4X1USW6-1", "sequence": { "sequence": "MAAQVLALLREVSRLEAPLEELRALQSVLQSVPLSELREHAAELHLGPLFSLLNENHREQTTLCVSILERLLQALEPVHVARNLKVDLQRGLTHTNDSVKILTLSQAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDIVRYRVYELIVEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAIMDSPQQICERYPVFVEKVFEMTESQDPTMIGVAVDTIGILGSNVEGKQVLQKTGTRFERLLMKIGYQAKNASTELKIRCLDAVSSLFYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISNQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVMDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLRLRTYLSEGPYYVKPISTTAVEGAE", "length": 466, "header": "tr|A0A4X1USW6-1|A0A4X1UT36_PIG Computationally mapped isoform of 26S proteasome non-ATPase regulatory subunit 5 OS=Sus scrofa OX=9823 GN=PSMD5 PE=1 SV=1 CANONICAL=A0A4X1UT36-1" }, "locus": { "chromosome": "1", "start_pos": 260868668, "end_pos": 260847941, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006057.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006057.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005903.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005903.3" } ] } }, { "isoform_ac": "A0A4X1USX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT36/entry#A0A4X1USX1-1", "sequence": { "sequence": "MAAQVLALLREVSRLEAPLEELRALQSVLQSVPLSELREHAAELHLGPLFSLLNENHREQTTLCVSILERLLQALEPVHVARNLKVDLQRGLTHTNDSVKILTLSQVGRIVDNSDAVTEILNNAELLKQIVYCIGGENLSVAKALIVEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAIMDSPQQICERYPVFVEKVFEMTESQDPTMIGVAVDTIGILGSNVEGKQVLQKTGTRFERLLMKIGYQAKNASTELKIRCLDAVSSLFYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISNQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVMDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLRLRTYLSEGPYYVKPISTTAVEGAE", "length": 461, "header": "tr|A0A4X1USX1-1|A0A4X1USX1_PIG Computationally mapped isoform of 26S proteasome non-ATPase regulatory subunit 5 OS=Sus scrofa OX=9823 GN=PSMD5 PE=1 SV=1 CANONICAL=A0A4X1UT36-1" }, "locus": { "chromosome": "1", "start_pos": 260868668, "end_pos": 260847941, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073442.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073442.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073312.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073312.1" } ] } }, { "isoform_ac": "A0A4X1UT36-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT36/entry#A0A4X1UT36-1", "sequence": { "sequence": "MAAQVLALLREVSRLEAPLEELRALQSVLQSVPLSELREHAAELHLGPLFSLLNENHREQTTLCVSILERLLQALEPVHVARNLKVDLQRGLTHTNDSVKILTLSQVGRIVDNSDAVTEILNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDIVRYRVYELIVEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAIMDSPQQICERYPVFVEKVFEMTESQDPTMIGVAVDTIGILGSNVEGKQVLQKTGTRFERLLMKIGYQAKNASTELKIRCLDAVSSLFYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISNQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVMDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLRLRTYLSEGPYYVKPISTTAVEGAE", "length": 504, "header": "tr|A0A4X1UT36-1|A0A4X1UT36_PIG Isoform 1 of 26S proteasome non-ATPase regulatory subunit 5 OS=Sus scrofa OX=9823 GN=PSMD5 PE=1 SV=1 CANONICAL=A0A4X1UT36-1" }, "locus": { "chromosome": "1", "start_pos": 260868668, "end_pos": 260847941, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072176.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072176.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061892.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061892.1" } ] } }, { "isoform_ac": "A0A8W4FG81-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT36/entry#A0A8W4FG81-1", "sequence": { "sequence": "MAAQVLALLREVSRLEAPLEELRHAAELEQTTLCVSILERLLQALEPVHVARNLKVDLQRGLTHTNDSVKILTLSQVGRIVDNSDAVTEILNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDIVRYRVYELIVEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAIMDSPQQICERYPVFVEKVFEMTESQDPTMIGVAVDTIGILGSNVEGKQVLQKTGTRFERLLMKIGYQAKNASTELKIRCLDAVSSLFYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISNQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVMDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLRLRTYLSEGPYYVKPISTTAVEGAE", "length": 474, "header": "tr|A0A8W4FG81-1|A0A4X1UT36_PIG Computationally mapped isoform of 26S proteasome non-ATPase regulatory subunit 5 OS=Sus scrofa OX=9823 GN=PSMD5 PE=1 SV=1 CANONICAL=A0A4X1UT36-1" }, "locus": { "chromosome": "1", "start_pos": 260868668, "end_pos": 260847941, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096470.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096470.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078250.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078250.1" } ] } }, { "isoform_ac": "A0A8W4FQF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT36/entry#A0A8W4FQF4-1", "sequence": { "sequence": "MAAQVLALLREVSRLEAPLEELRALQSVLQSVPLSELREHAAELHLGPLFSLLNENHRLEELLTILMLLLRF", "length": 72, "header": "tr|A0A8W4FQF4-1|A0A4X1UT36_PIG Computationally mapped isoform of 26S proteasome non-ATPase regulatory subunit 5 OS=Sus scrofa OX=9823 GN=PSMD5 PE=1 SV=1 CANONICAL=A0A4X1UT36-1" }, "locus": { "chromosome": "1", "start_pos": 260868668, "end_pos": 260863048, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095135.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095135.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080609.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080609.1" } ] } }, { "isoform_ac": "I3L9N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT36/entry#I3L9N5-1", "sequence": { "sequence": "MAAQVLALLREVSRLEAPLEELRALHLGPLFSLLNENHREQTTLCVSILERLLQALEPVHVARNLKVDLQRGLTHTNDSVKILTLSQVGRIVDNSDAVTEILNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDIVRYRVYELIVEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAIMDSPQQICERYPVFVEKVFEMTESQDPTMIGVAVDTIGILGSNVEGKQVLQKTGTRFERLLMKIGYQAKNASTELKIRCLDAVSSLFYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISNQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVMDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLRLRTYLSEGPYYVKPISTTAVEGAE", "length": 485, "header": "tr|I3L9N5-1|A0A4X1UT36_PIG Computationally mapped isoform of 26S proteasome non-ATPase regulatory subunit 5 OS=Sus scrofa OX=9823 GN=PSMD5 PE=1 SV=3 CANONICAL=A0A4X1UT36-1" }, "locus": { "chromosome": "1", "start_pos": 260868668, "end_pos": 260847941, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022255.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022255.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020748.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020748.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L9N5", "url": "https://www.uniprot.org/uniprotkb/I3L9N5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155007", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155007", "resource": "KEGG Pathway" }, { "id": "R-SSC-9907900", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9907900", "resource": "Reactome", "description": "Proteasome assembly" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LA61-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 5", "gene_name": "Psmd5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAQAVTLLREVARLEAPLEELRALQSVVHAVPLHELREQAAELRLGPLFSLLNENNREQTALCVSILERLLQAVGPVHVARNLRVDLQRGLTHPDDSVKTLTLSQIGRIVENSEAVTEILNNTELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKNVMKTNDIVRYRVYELIIEISSVSLESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSGFYLPGFVKFFGNLAVMDSPQQICERYPVFLEKVFEMADSQDPTMIGVAVDTVGILGSSVEGKQVLQKTGTRFEHLLTRIGYQAKNASTELKTRCLDAVSSLLYLSPEQQTDDFLRMAESWFASLSQDSLELFRGISNQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEFVMDRSVEHDKASKDAKYELVKALANSKTVAEIFGNSNYLRLRTYLSEGPYYVKPVATTAVEGAD", "length": 504 }, "evidence": [ { "id": "A0A4X1UT36", "url": "https://omabrowser.org/oma/group/A0A4X1UT36/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V1AGU4-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 5", "gene_name": "PSMD5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAEAVVELLERAARREAPLEELRALRLAVQAVPPAALRARLSDEHLAALFTLLSSSEREQLSACVAVLERLLQALDPLYVIQNLREELRKGLFHPDDSVKILSISQVGRIVENSDAVREILNSPELLRQIINCIGGEKIAVAKEAIKSLSRIAQTQDGLEALFVSSLLSDLKNVMGTNDVVRYRVYELIVEISSVSADSLNYCANSGLISDLIGELTGDDVLVRATCIEMVTSLAHSPHGRQYLAQQGIIDKISNIIIGAESDPFSGFYLPGFIKFFGNLAVVDSPQQICERYPVFMEKVFEMAESHDPTMNGVAVDTLGILGSSVEGKQVLQKARGRFQNLLNKIGHQAKNAPTELRLRCLDAVSSLLYLPPEQQTEDLLRMTESWFSSLSSQPLELFRSISTQPFPDLHCGALRVFTAIANQAWAQKLMLNSPGFVEYIVDRSVEPDKASKDAKYELVKALVNSKTIAEIFGNQYYLRLRAYLNEGPYYVKAVSTTAVEGAE", "length": 504 }, "evidence": [ { "id": "A0A4X1UT36", "url": "https://omabrowser.org/oma/group/A0A4X1UT36/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1N6Z0-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 5", "gene_name": "PSMD5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLLVRPGRFGLSQNSREGRLRPADLARLEEAPREPGAGRADWRTRAGGGIMAAQALALLREVSRLEAPLEELRALQSLLQSVPLSELREQAAELRLGPLFSLLNENHREQTTLCVSILERLLQALEPVHVARNLRVDLQRGLTHPNDSVKILTLSQVGRIVENSDAVTEILNNAELLKQIVYCIGGENLSVAKTAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDIVRYRVYELIVEISSVSPESLNCCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLACTHHGRQYLAQEGVIDQISNIIVGADADPFSSFYLPGFVKFFGNLAIMDSPQQICERYPIFMEKVFEMTESQDPTMIGVAVDTIGILGSNVEGKQVLQKTGTRFERLLMKIGYQAKNASTELKIRCLDALSSLFYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISNQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVMDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLRLRTYLSEGPYYVKPISTTAVEGAE", "length": 554 }, "evidence": [ { "id": "A0A4X1UT36", "url": "https://omabrowser.org/oma/group/A0A4X1UT36/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1QU35-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 5", "gene_name": "psmd5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMAAPIESLLNEICESEDPIEELKSLRTAVLATPVSGLRPAVSGARLEIIFSLLNTNDKEQIEVCVEILSRVLQALEPVQLAQNYRKALQSGLNHPDDSVKVLTLTQIGRVAGHAEGVTQMLNNVEILHDVIQCISVERIAVAKEAIAALSKLSNTKAGLDALFRSDLLNKLKDVMLTSDIIRYRVYELIVEVSTVSPVSLGYCANSGLISQMLEELTGDDVLVRATAIEMVTNLAQSQHGRQYLAQQGIMDKISNMIIAAESDTFSSLYLPGLVKFFGSLAIMDSPQQVCEKYPVFLEVVFSMVMNLDPTLTPVALDTLGVLGGTVEGKQVLQKTGEKFVSVLKRMSKVASDGATELRVRCLEALAQLLTLPVEQQTDDLLLTCESWFNCLSSQPMAMIRNISTQPFPELHCSALRIFTAIGCQPWAQQLMMDTPGFVEWVMDRSVGSGKEAKDCKFELVSALLSSSSVQKIFGAHNYLKLKTYLNEGPYYVTAVSAVTTEGAD", "length": 505 }, "evidence": [ { "id": "A0A4X1UT36", "url": "https://omabrowser.org/oma/group/A0A4X1UT36/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3V8G2-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 5", "gene_name": "Psmd5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAQAVSLLREVARLEAPLEELRALQSVVQAVPLHELREQAAELRLRPLFSLLNQNNREQTALCVSILERLLQAVEPIHLARNLRLDLQRGLTHPDDSVKTLTLSQIGRIVEDSEAVTEVLSNAELLRQVVCCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKNVMKTNDVVRYRVYELIIDISSVSSESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSGFYLPGFVKFFGNLAVMDSPQQICERYPVFLEKVFAMADSQDPTMIGVAVDTVGILGSSVEGKQVLQKTGTRFERLLTRIGYQAKNASTELKIRCLDAVSSLLYLSPEQQTDDFLGMTESWFSSVSRDSLELFRGISNQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEFVMDRSVEHDKTSKDAKYELVKALANSKTVAEIFGNSNYLRLRTYLSEGPYYVKPVATTAVEGAD", "length": 504 }, "evidence": [ { "id": "A0A4X1UT36", "url": "https://omabrowser.org/oma/group/A0A4X1UT36/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q16401-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 5", "gene_name": "PSMD5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAQALALLREVARLEAPLEELRALHSVLQAVPLNELRQQAAELRLGPLFSLLNENHREKTTLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSDAVTEILNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKSVMKTNDIVRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKVFEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVELKIRCLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVVDRSVEHDKASKDAKYELVKALANSKTIAEIFGNPNYLRLRTYLSEGPYYVKPVSTTAVEGAE", "length": 504 }, "evidence": [ { "id": "A0A4X1UT36", "url": "https://omabrowser.org/oma/group/A0A4X1UT36/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BJY1-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 5", "gene_name": "Psmd5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAQAVSLLREVARLEAPLEELRALQSVVQAVPLHELREQAAELRLRPLFSLLNQNNREQTALCVSILERLLQAVEPIHLARNLRLDLQRGLTHPDDSVKTLTLSQIGRIVENSEAVTEILNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALFESNLLDDLKNVMKTNDVVRYRVYELIIDISSVSSESLNYCTTSGLVTQLLKELTGEDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSGFYLPGFVKFFGNLAVMDSPQQICERYPVFLEKVFEMADSQDPTMIGVAVDTVGILGSSVEGKQVLQKTGTRFERVLMRVGYQAKNASTELKIRCLDAVSSLLYLSPEQQTDDFLGMTESWFSSMSRDSLELFRGISNQPFPELHCAALKVFTAIADQPWAQRLMFNSPGFVEFVMDRSVEHDKASKDAKYELVKALANSKTVAEIFGNSNYLRLRAYLSEGPYYVKPVATTAVEGAD", "length": 504 }, "evidence": [ { "id": "A0A4X1UT36", "url": "https://omabrowser.org/oma/group/A0A4X1UT36/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VYG1-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 5", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEMEDNWWVTKLKALESKPQRLDALTAMNSAIAKEAALPRQIIERLLTTDQLYDCANPAADSHVPKDQAVDVTLELLCHCLDQLAMDTADEQLSSLLRRGLTHSNPALRAQVLASLFKKLLRQLTVGQVLTLPNNELIFLILDELKQPDTQSTSLAINILSIVLPQRISNADVQAKLVQLLKQNEIVRCRAYELAVVLAKKSATLLSDVTFILDAALSELDNDDVLLQASVMELLVPLAEQNHGLSYMERRRVLDIISYRVQRVEEHPLDALLVPSIMKFFGKISVYQPLKIIGGYPHMLACLFMQLQSEDESILPTAMDTLANLATTPQGKILLNMHFSGAMEKSFKKYGSHTKKLSAHIKKRLLNSLDVIYDFKTPPATEIINIGKNWYECFAGGAHANIIMDLINTPFPDLQMAALSFLKTICKYNWGIVALKNTGGAVEFLLSRQKDLHRDIKYMKWQIMEILSASAEFSPTETIRFTAYVNEGPYHVQADLDVATEPQGNA", "length": 506 }, "evidence": [ { "id": "A0A4X1UT36", "url": "https://omabrowser.org/oma/group/A0A4X1UT36/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteasome assembly", "id": "GO:0043248", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043248", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UT36", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT36" } ], "pmid": "" }, { "name": "proteasome regulatory particle assembly", "id": "GO:0070682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070682", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UT36", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT36" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "proteasome regulatory particle, base subcomplex", "id": "GO:0008540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008540", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UT36", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT36" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UT36", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT36" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 138, "end_pos": 140, "annotation": "n_glycosylation_sequon" }, { "start_pos": 352, "end_pos": 354, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 138, "end_pos": 140 }, { "start_pos": 352, "end_pos": 354 }, { "start_pos": 96, "end_pos": 98 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1USW9-1", "uniprot_ac": "A0A4X1USW9", "uniprot_id": "A0A4X1USW9_PIG", "mass": { "chemical_mass": 50516.0, "monoisotopic_mass": 50516.0 }, "refseq": { "ac": "XP_020920346", "name": "DDB1- and CUL4-associated factor 12 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920346" }, "gene_names": [ { "name": "DCAF12", "type": "recommended", "evidence": [ { "id": "A0A4X1USW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USW9" } ] }, { "name": "DCAF12", "type": "synonym", "evidence": [ { "id": "XP_020920346", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920346" } ] } ], "protein_names": [ { "name": "DDB1- and CUL4-associated factor 12", "type": "recommended", "evidence": [ { "id": "A0A4X1USW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USW9/entry#names_and_taxonomy" } ] }, { "name": "DDB1- and CUL4-associated factor 12 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020920346", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920346" } ] }, { "name": "WD repeat-containing protein 40A", "type": "synonym", "evidence": [ { "id": "A0A4X1USW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USW9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1USW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USW9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DCAF12", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USW9", "locus": { "chromosome": "10", "start_pos": 32714940, "end_pos": 32674045, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024384", "url": "https://www.ensembl.org/id/ENSSSCG00000024384" } ] } } ], "crossref": [ { "id": "ENSSSCG00000024384", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024384", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523013", "url": "https://www.ncbi.nlm.nih.gov/gene/100523013", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051191", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051191", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523013", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523013", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GGEQYGW", "url": "https://omabrowser.org/oma/group/GGEQYGW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1USW9", "url": "https://www.orthodb.org/?gene=A0A4X1USW9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19860", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19860", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19860:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19860:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23760", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23760", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020920346", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920346", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1USW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1USW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USW9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8P2", "url": "https://www.uniprot.org/uniprotkb/I3L8P2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8P2-1", "url": "https://www.uniprot.org/uniprotkb/I3L8P2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARKAVSRKRKAPASPGAGSDAQGPQFGWDHSLHKRKRLPPVKRSLVYYLKNREVRLQNETNYSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTSQITKIPILKDREPGGVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLLSTKLPYCRENVCLAYGSEWSVYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSFYEHIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGKGWLNHDETWRNYFSDIDFFPNAVYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS", "length": 453, "header": "tr|A0A4X1USW9-1|A0A4X1USW9_PIG Isoform 1 of DDB1- and CUL4-associated factor 12 OS=Sus scrofa OX=9823 GN=DCAF12 PE=3 SV=1 CANONICAL=A0A4X1USW9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1USW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USW9/entry#A0A4X1USW9-1", "sequence": { "sequence": "MARKAVSRKRKAPASPGAGSDAQGPQFGWDHSLHKRKRLPPVKRSLVYYLKNREVRLQNETNYSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTSQITKIPILKDREPGGVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLLSTKLPYCRENVCLAYGSEWSVYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSFYEHIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGKGWLNHDETWRNYFSDIDFFPNAVYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS", "length": 453, "header": "tr|A0A4X1USW9-1|A0A4X1USW9_PIG Isoform 1 of DDB1- and CUL4-associated factor 12 OS=Sus scrofa OX=9823 GN=DCAF12 PE=3 SV=1 CANONICAL=A0A4X1USW9-1" }, "locus": { "chromosome": "10", "start_pos": 32712973, "end_pos": 32674301, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079454.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079454.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062292.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062292.1" } ] } }, { "isoform_ac": "I3L8P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USW9/entry#I3L8P2-1", "sequence": { "sequence": "MARKAVSRKRKAPASPGAGSDAQGPQFCFPQFGWDHSLHKRKRLPPVKRSLVYYLKNREVRLQNETNYSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTSQITKIPILKDREPGGVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLLSTKLPYCRENVCLAYGSEWSVYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSFYEHIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGKGWLNHDETWRNYFSDIDFFPNAVYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS", "length": 458, "header": "tr|I3L8P2-1|I3L8P2_PIG Computationally mapped isoform of DDB1- and CUL4-associated factor 12 OS=Sus scrofa OX=9823 GN=DCAF12 PE=3 SV=3 CANONICAL=A0A4X1USW9-1" }, "locus": { "chromosome": "10", "start_pos": 32712973, "end_pos": 32674301, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027910.3", "url": "https://www.ensembl.org/id/ENSSSCT00000027910.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020402.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020402.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1USW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USW9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523013", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523013", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M4V2-1", "protein_name": "DDB1- and CUL4-associated factor 12", "gene_name": "Dcaf12", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARKAVSRKRKAPASPGAGSDAQGPQFGWDHSLHKRKRLPPVKRSLVYYLKNREVRLQSETNYSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTGQITKIPILKDREPGGVSQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWINDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSPVPVYAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLFSTKLPYCRENVCLAYGSEWSVYAVGSQAHVSFLDPRQPSSNVKSVCSRERGSGIRSVSFYEHIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLTGENLKLTTGKGWLNHDETWRNYFSDIDFFPNAVYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS", "length": 453 }, "evidence": [ { "id": "A0A4X1USW9", "url": "https://omabrowser.org/oma/group/A0A4X1USW9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "M0RC41-1", "protein_name": "DDB1- and CUL4-associated factor 12", "gene_name": "Dcaf12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARKAVSRKRKAPASPGAGSDAQGPQFGWDHSLHKRKRLPPVKRSLVYYLKNREVRLQNETNYSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTGQITKIPILKDREPGGVTQQGCGIHAIELNPSRTFLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWINDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSPVPVYAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENALSKLLSTKLPYCRENVCLAYGSEWSVYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSFYEHIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGKGWLNHDETWRNYFSDIDFFPNAVYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS", "length": 453 }, "evidence": [ { "id": "A0A4X1USW9", "url": "https://omabrowser.org/oma/group/A0A4X1USW9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3MHH0-1", "protein_name": "DDB1- and CUL4-associated factor 12", "gene_name": "DCAF12", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MARKAVSRKRKAPALPGAGSDAQDPQFGWDHSLHKRKRLPPVKRSLVYYLKNREVRLQNETSYSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTSQITKIPILKDREPGCVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYSHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKTENTLSKLLSTKLPYCRENVCLAYGNEWSVYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSFYEHIITVGTGQGSLLFYDIRAQRFLEEKLSACYGSKPKLAGENLKLTTGKGWLNHDETWRNYFSDIDFFPNAVYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS", "length": 453 }, "evidence": [ { "id": "A0A4X1USW9", "url": "https://omabrowser.org/oma/group/A0A4X1USW9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5F3R7-1", "protein_name": "DDB1- and CUL4-associated factor 12", "gene_name": "DCAF12", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": 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} ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process via the C-end degron rule pathway", "id": "GO:0140627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140627", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1USW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USW9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1USW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USW9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 225, "end_pos": 227, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1USX3-1", "uniprot_ac": "A0A4X1USX3", "uniprot_id": "A0A4X1USX3_PIG", "mass": { "chemical_mass": 14289.0, "monoisotopic_mass": 14289.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A0A4X1USX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1USX3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX3", "locus": {} } ], "crossref": [ { "id": "A0A4X1USX3", "url": "https://alphafold.ebi.ac.uk/entry/A0A4X1USX3", "database": "AlphaFoldDB", "categories": [] }, { "id": "CLNQHDA", "url": "https://omabrowser.org/oma/group/CLNQHDA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1USX3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1USX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVPSRGLGTPGGESFLGRAHCHQLESRLHTVIFTPKSQTELAPQGLGRPVFLRYACLNQHDASESPSLPLEAWILFLMWTLMGWSLGDRGGVGLPASQFGKERSLQPAAWKLETLVSANLLRAHPGFSPKS", "length": 131, "header": "tr|A0A4X1USX3-1|A0A4X1USX3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1USX3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1USX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX3/entry#A0A4X1USX3-1", "sequence": { "sequence": "MVPSRGLGTPGGESFLGRAHCHQLESRLHTVIFTPKSQTELAPQGLGRPVFLRYACLNQHDASESPSLPLEAWILFLMWTLMGWSLGDRGGVGLPASQFGKERSLQPAAWKLETLVSANLLRAHPGFSPKS", "length": 131, "header": "tr|A0A4X1USX3-1|A0A4X1USX3_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A4X1USX3-1" }, "locus": { "chromosome": "9", "start_pos": 67117023, "end_pos": 67116530, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064857.1", "url": "https://www.ensembl.org/id/ENSSSCT00000064857.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048458.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048458.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1USX3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1USX3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1UT29-1", "uniprot_ac": "A0A4X1UT29", "uniprot_id": "A0A4X1UT29_PIG", "mass": { "chemical_mass": 35184.0, "monoisotopic_mass": 35184.0 }, "refseq": { "ac": "XP_005670991", "name": "guanine nucleotide-binding protein subunit beta-like protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670991" }, "gene_names": [ { "name": "GNB1L", "type": "recommended", "evidence": [ { "id": "A0A4X1UT29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT29" } ] }, { "name": "GNB1L", "type": "synonym", "evidence": [ { "id": "XP_005670991", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670991" } ] } ], "protein_names": [ { "name": "G protein subunit beta 1 like", "type": "synonym", "evidence": [ { "id": "A0A4X1UT29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT29/entry#names_and_taxonomy" } ] }, { "name": "guanine nucleotide-binding protein subunit beta-like protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005670991", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670991" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UT29", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT29" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GNB1L", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT29", "locus": { "chromosome": "14", "start_pos": 51305039, "end_pos": 51343029, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010130", "url": "https://www.ensembl.org/id/ENSSSCG00000010130" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010130", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010130", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153889", "url": "https://www.ncbi.nlm.nih.gov/gene/100153889", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153889", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153889", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YQRQSMQ", "url": "https://omabrowser.org/oma/group/YQRQSMQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1UT29", "url": "https://www.orthodb.org/?gene=A0A4X1UT29", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RK57", "url": "https://www.orthodb.org/?gene=F1RK57", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19854", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19854", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19854:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19854:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005670991", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670991", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1UT29", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UT29-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT29-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RK57", "url": "https://www.uniprot.org/uniprotkb/F1RK57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RK57-1", "url": "https://www.uniprot.org/uniprotkb/F1RK57-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADLPLPPPDPQFVLRGTQSAVHALHFCGGAQGQGCPLLLSGSLRGLVHIWSLQTRRVVATLDGHGGQCVTWLQTLPQGPQLLSQGRDLKLCLWDLAEGRNTVVDSVHLESVGFCRGSILAGGQPRWMLAVPGSGSDEVQILEMPSKTSVCSLKPEAGARPGMPMCLQLWQANSSPRPLLLAGYEDGSVALWDVSEQKVCSRIACHTEPVMGLDVDSQKARGVSGSAEKALAVWSVDEQQALQVRRTHQLTNPGIADIKIRPDRKILATAGWDHRVRVFLWQTMKPLAVLAFHSATVHCVAFAADSLLAAGSGDHRISIWSLYPHT", "length": 326, "header": "tr|A0A4X1UT29-1|A0A4X1UT29_PIG Isoform 1 of G protein subunit beta 1 like OS=Sus scrofa OX=9823 GN=GNB1L PE=4 SV=1 CANONICAL=A0A4X1UT29-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UT29-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT29/entry#A0A4X1UT29-1", "sequence": { "sequence": "MADLPLPPPDPQFVLRGTQSAVHALHFCGGAQGQGCPLLLSGSLRGLVHIWSLQTRRVVATLDGHGGQCVTWLQTLPQGPQLLSQGRDLKLCLWDLAEGRNTVVDSVHLESVGFCRGSILAGGQPRWMLAVPGSGSDEVQILEMPSKTSVCSLKPEAGARPGMPMCLQLWQANSSPRPLLLAGYEDGSVALWDVSEQKVCSRIACHTEPVMGLDVDSQKARGVSGSAEKALAVWSVDEQQALQVRRTHQLTNPGIADIKIRPDRKILATAGWDHRVRVFLWQTMKPLAVLAFHSATVHCVAFAADSLLAAGSGDHRISIWSLYPHT", "length": 326, "header": "tr|A0A4X1UT29-1|A0A4X1UT29_PIG Isoform 1 of G protein subunit beta 1 like OS=Sus scrofa OX=9823 GN=GNB1L PE=4 SV=1 CANONICAL=A0A4X1UT29-1" }, "locus": { "chromosome": "14", "start_pos": 51321220, "end_pos": 51306823, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044100.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044100.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031575.3", "url": "https://www.ensembl.org/id/ENSSSCP00000031575.3" } ] } }, { "isoform_ac": "F1RK57-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT29/entry#F1RK57-1", "sequence": { "sequence": "MADLPLPPPDPQFVLRGTQSAVHALHFCGGAQGQGCPLLLSGSLRGLVHIWSLQTRRVVATLDGHGGQCVTWLQTLPQGPQLLSQGRDLKLCLWDLAEGRNTVVDSVHLESVGFCRGSILAGGQPRWMLAVPGSGSDEANSSPRPLLLAGYEDGSVALWDVSEQKVCSRIACHTEPVMGLDVDSQKARGVSGSAEKALAVWSVDEQQALQVRRTHQLTNPGIADIKIRPDRKILATAGWDHRVRVFLWQTMKPLAVLAFHSATVHCVAFAADSLLAAGSGDHRISIWSLYPHT", "length": 293, "header": "tr|F1RK57-1|A0A4X1UT29_PIG Computationally mapped isoform of G protein subunit beta 1 like OS=Sus scrofa OX=9823 GN=GNB1L PE=4 SV=1 CANONICAL=A0A4X1UT29-1" }, "locus": { "chromosome": "14", "start_pos": 51321220, "end_pos": 51306823, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011091.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011091.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010803.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010803.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RK57", "url": "https://www.uniprot.org/uniprotkb/F1RK57" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153889", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153889", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LUE3-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-like protein 1 isoform X4", "gene_name": "Gnb1l", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAPFPPPPGPRFVLRGTQSPVNTLHFCPASQALGNPLLFSGSQSGLVHIWSLQTRRTVAALNGHKGQGVTWLKTLPQGHQLLSQGRDLRLCLWDLAEGRNTIMDTVQLDSVGFCKSSVLARGQLCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADAKPGMPMCLGLWQTNSSPRPLLLAGYEDGSVTLWDILERKVCSRIACHEEPVMGLDFDSQKAKGVSGSAGKVLAVWSLDGQQSLQVYKTHELTNPGIAEVTIRPDHKILATAGWDHRIRVFHWRTMKPLAVLAFHSASVYCVAFATDGLLAAGSKDQRISIWSLYPCS", "length": 326 }, "evidence": [ { "id": "A0A4X1UT29", "url": "https://omabrowser.org/oma/group/A0A4X1UT29/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0ZY84-1", "protein_name": "G protein subunit beta 1 like", "gene_name": "GNB1L", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAQPPPDPHFVLRGTGAAVHALHFSCGGGEPDIPVLFSGSENGFIHVWNLKTHRVDAALDGHGRKSVCGLKTMDGKERLLSQGRDQRICLWDLAEGRTSVTDSVFTENVGFCRCSLLKVAEGRWLMATAAKALEEVQVLELPSKTSVCTLKPEVGAKLGMPMCLKLWQGSCGSQPSLLAGYEDGSVLLWNLSTGKVLSQLICHQEPVMSLDFDSEKAKGISGSSEKVLSIWSLNEQQNLQKTHRLVNAGISDITIRPDKKILATAGWDHRIRIFGWKKLKPLAVLDYHTATVHSVSFSDHKSPSDRLLAAGAKDHRISIWSIYTQT", "length": 326 }, "evidence": [ { "id": "A0A4X1UT29", "url": "https://omabrowser.org/oma/group/A0A4X1UT29/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A2F0-1", "protein_name": "G protein subunit beta 1 like", "gene_name": "Gnb1l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAPFPPPPSPRFVLRGTQSAVNTLHFCPAPGAAENPLLFSGSQNGLVHIWSLQTRRIVATLNGHGGQGVTWLKTLPQGQQLLSQGRDPRLCLWDLAEGRNTVMDSVQLDSVGFCKSSILVRGQLCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADAKPGMPMCLGLWQTNSSLRPLLLAGYEDGSVTLWDVSERKVCSQITCHEEPVMGLDFDSQKAKGVSGSAGKVLAVWSLDDQQSLQVKKTHELINPGIAEVTLRPDHRLFATAGWDHRIRVFHWRTIKPLAVLAFHSAPVHCVAFAADGLLAAGSKDQRISVWSLYPCP", "length": 326 }, "evidence": [ { "id": "A0A4X1UT29", "url": "https://omabrowser.org/oma/group/A0A4X1UT29/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3MV14-1", "protein_name": "Protein DECREASED SIZE EXCLUSION LIMIT 1", "gene_name": "DSE1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSKRPPPDPVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHRAVSSAWAHSRANGVLAVAASPWLGEDKIISQGRDGTVKCWDIEDGGLSRDPLLILETCAYHFCKFSLVKKPKNSLQEAESHSRGCDEQDGGDTCNVQIADDSERSEEDSGLLQDKDHAEGTTFVAVVGEQPTEVEIWDLNTGDKIIQLPQSSPDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYEDGSILLWDIRNAKIPLTSVKFHSEPVLSLSVASSCDGGISGGADDKIVMYNLNHSTGSCTIRKEITLERPGVSGTSIRVDGKIAATAGWDHRIRVYNYRKGNALAILKYHRATCNAVSYSPDCELMASASEDATVALWKLYPPHKSL", "length": 386 }, "evidence": [ { "id": "A0A4X1UT29", "url": "https://omabrowser.org/oma/group/A0A4X1UT29/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q54HW5-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-like protein 1 homolog", "gene_name": "gnb1l", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKEASNNNNSAPDPYYILRGHKFNVNSVLFDKVNPNLLYSGSGDGELKLWNIEEKKCISTQIAHSEGIGGGVLSLQWLSNDNNNENNNNNDEICGNILSQGRDGVIKIWSIIDNCTFKNTYRLETNSLSLGKCSSLSSNLLSISGSAIDPTSSTSQVEIWDLKNKQVINKLKPNNQQLFEKLGLPMSLKLYYENENNDNSNQSNDQIRLCTGYENGELLIWDLRNTSIPLVSSKLHNEPILSFALSNNSTKGISGSGDTNIIEFNINYESKQFNITKTHKLNNGGISEIKIRNDEKIYATAGWDKRIRIFNFKKQTPLAILKYHTESVYSIDFNSNNILASGSKDCKIALWDIYTTKK", "length": 359 }, "evidence": [ { "id": "A0A4X1UT29", "url": "https://omabrowser.org/oma/group/A0A4X1UT29/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9BYB4-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-like protein 1", "gene_name": "GNB1L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTAPCPPPPPDPQFVLRGTQSPVHALHFCEGAQAQGRPLLFSGSQSGLVHIWSLQTRRAVTTLDGHGGQCVTWLQTLPQGRQLLSQGRDLKLCLWDLAEGRSAVVDSVCLESVGFCRSSILAGGQPRWTLAVPGRGSDEVQILEMPSKTSVCALKPKADAKLGMPMCLRLWQADCSSRPLLLAGYEDGSVVLWDVSEQKVCSRIACHEEPVMDLDFDSQKARGISGSAGKALAVWSLDWQQALQVRGTHELTNPGIAEVTIRPDRKILATAGWDHRIRVFHWRTMQPLAVLAFHSAAVQCVAFTADGLLAAGSKDQRISLWSLYPRA", "length": 327 }, "evidence": [ { "id": "A0A4X1UT29", "url": "https://omabrowser.org/oma/group/A0A4X1UT29/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9EQ15-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-like protein 1", "gene_name": "Gnb1l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAALFPPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIWSLQTRRIVTTLNGHGGQGVIWLKTLPQGHQLLSQGRDLRLCLWDLEEGRNTIMDSVQLDSVGFCRGSILVRGQQCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADARPGMPMCLGLWQTNSSLRPLLLAGYEDGSVTLWDISERKVCSQITCHEEPVMGLDFDSQKAKGISGSAGKVLAVWSLDDQQSLQVKKTHELTNPGIAEVTIRPDHKILATAGWDHRIRVFHWRTMKPLAVLAFHSAPVYCVAFAADGLLAAGSKDQRISIWSLYPCP", "length": 326 }, "evidence": [ { "id": "A0A4X1UT29", "url": "https://omabrowser.org/oma/group/A0A4X1UT29/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UT29", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UT29" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UT29", 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"https://alphafold.ebi.ac.uk/entry/A0A4X1UX44", "database": "AlphaFoldDB", "categories": [] }, { "id": "106504483", "url": "https://www.ncbi.nlm.nih.gov/gene/106504483", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106504483", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504483", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1UX44", "url": "https://www.orthodb.org/?gene=A0A4X1UX44", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19339", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19339", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19339:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19339:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013833692", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013833692", 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"MKGLVRPVLGLLLAQVCCVRGMDVDQSPPALSLQEGVSSTLWCNFSSSTRSVQWYRLAPGGHLSHLFTIPAGTQKNGRLNATTVATERRSSLYISSAQTTDSATYLCAGEHSAPQAPAACTGTLRGAQPLLQPPPHHEAPTGHSHGFLFLTYTGTHLTTDTFWPTDLGLRPLSSLLNLYLLLH", "length": 183, "header": "tr|A0A4X1UX44-1|A0A4X1UX44_PIG Isoform 1 of Ig-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC106504483 PE=4 SV=1 CANONICAL=A0A4X1UX44-1" }, "locus": { "chromosome": "7", "start_pos": 77146159, "end_pos": 77145426, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058479.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058479.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035027.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035027.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., 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"start_pos": 158321972, "end_pos": 158291529, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066524.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066524.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064752.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064752.1" } ] } }, { "isoform_ac": "A0A8D1N0R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UXG0/entry#A0A8D1N0R6-1", "sequence": { "sequence": "MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKDEDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLLDSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINKNVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGALTQAGQSEGYSQQTGPQQPQQFQGYGQQPTSQAPAPAFSGQPQQMPAQPPQQYQASSYPPQTYTTQTSQPTNYTVAPASQPGMAPSQPGAYQPRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR", "length": 367, "header": "tr|A0A8D1N0R6-1|A0A4X1UXG0_PIG Computationally mapped isoform of Trafficking from ER to golgi regulator OS=Sus scrofa OX=9823 GN=TFG PE=1 SV=1 CANONICAL=A0A4X1UXG0-1" }, "locus": { "chromosome": "13", "start_pos": 158321972, "end_pos": 158291529, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083462.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083462.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061843.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061843.1" } ] } }, { "isoform_ac": "I3LNI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UXG0/entry#I3LNI2-1", "sequence": { "sequence": "MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKDEDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLLDSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINKNVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGALTQAGQSEDVPAVPAAGWLWHSAATGAAPAATAVRYSVFRIPVNGEVSLQVAAAGYSQQTGPQQPQQFQGYGQQPTSQAPAPAFSGQPQQMPAQPPQQYQASSYPPQTYTTQTSQPTNYTVAPASQPGMAPSQPGAYQPRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR", "length": 413, "header": "tr|I3LNI2-1|A0A4X1UXG0_PIG Computationally mapped isoform of Trafficking from ER to golgi regulator OS=Sus scrofa OX=9823 GN=TFG PE=1 SV=4 CANONICAL=A0A4X1UXG0-1" }, "locus": { "chromosome": "13", "start_pos": 158321972, "end_pos": 158291529, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026186.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026186.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025656.4", "url": "https://www.ensembl.org/id/ENSSSCP00000025656.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRV2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRV2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:414406", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:414406", "resource": "KEGG Pathway" }, { "id": "R-SSC-204005", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "resource": "Reactome", "description": "COPII-mediated vesicle transport" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A4X1V0Q0-1", "uniprot_ac": "A0A4X1V0Q0", "uniprot_id": "A0A4X1V0Q0_PIG", "mass": { "chemical_mass": 211162.0, "monoisotopic_mass": 211162.0 }, "refseq": { "ac": "XP_005659765", "name": "zinc finger protein 106 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659765" }, "gene_names": [ { "name": "ZNF106", "type": "recommended", "evidence": [ { "id": "A0A4X1V0Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V0Q0" } ] }, { "name": "ZNF106", "type": "synonym", "evidence": [ { "id": "XP_005659765", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659765" } ] } ], "protein_names": [ { "name": "Zinc finger protein 106", "type": "recommended", "evidence": [ { "id": "A0A4X1V0Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V0Q0/entry#names_and_taxonomy" } ] }, { "name": "Zinc finger protein 474", "type": "synonym", "evidence": [ { "id": "A0A4X1V0Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V0Q0/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 106 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005659765", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659765" } ] } ], "function": [ { "annotation": "RNA-binding protein. Specifically binds to 5'-GGGGCC-3' sequence repeats in RNA. Essential for maintenance of peripheral motor neuron and skeletal muscle function. Required for normal expression and/or alternative splicing of a number of genes in spinal cord and skeletal muscle, including the neurite outgrowth inhibitor RTN4. Also contributes to normal mitochondrial respiratory function in motor neurons, via an unknown mechanism.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UY39", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UY39#function" }, { "database": "UniProtKB", "id": "ARBA00056374", "url": "https://www.uniprot.org/uniprotkb/ARBA00056374#function" }, { "database": "UniProtKB", "id": "A0A4X1V0Q0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V0Q0#function" }, { "database": "UniProtKB", "id": "F1SI26", "url": "https://www.uniprot.org/uniprotkb/F1SI26#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V0Q0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V0Q0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF106", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V0Q0", "locus": { "chromosome": "1", "start_pos": 128957305, "end_pos": 128893971, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004725", "url": "https://www.ensembl.org/id/ENSSSCG00000004725" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004725", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004725", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100620097", "url": "https://www.ncbi.nlm.nih.gov/gene/100620097", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018391", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018391", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042622", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042622", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620097", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620097", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1V0Q0", "url": "https://www.orthodb.org/?gene=A0A4X1V0Q0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14435", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14435", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14435:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14435:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005659765", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659765", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1UY39", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UY39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UY39-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UY39-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V0Q0", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V0Q0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V0Q0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V0Q0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI26", "url": "https://www.uniprot.org/uniprotkb/F1SI26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI26-1", "url": "https://www.uniprot.org/uniprotkb/F1SI26-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVRERKCILCNTVYSSKKEMDEHMRSMLHHRELENLKGRDSSHECRVCGVTEVGLSAYAKHISGQLHKDNVDAQEREDDGKGEEEEEDYFDKELVQLIKQRDEQSRQDEPSNSSQEINSDDRRPQRRREDRVPYQDRENFSQPSWHHRGPPQRDWKWEKDGFNNTRKNSFPHSLRNSGGPRGCSGWHKGVAGSSSTWFHNHSNSGGGWHSSSGMVDWNHNGAGRNSSWHSEGTGGFSSWHMNSSNGNWKSNGRSANSWNYSGPGDKFQPSRNRNSNCQMEDMTMLWNKKSKSGKYSQGRYSWQRQENDKVGTVATYRGPSEGFTSDRFPSEGLLDFSFEQLESQTTKQTDNTASKIGGKNGSVAREKLHRWTPYPSQKTLDLQSGMKEVTGNKSEVIEKPLFDFSLITGGTKDPQVDETNNPSMLKTHKKKHTGSLSRKATSSCTASYEVVRESPITEKPEQEHKSNKTPSLKSPLLPIPATKSISQKQDSKNASKTTKTNSSFPGEHSNPLDKPIVEENQGSSSISKSQGSCPRVLKGNKSTSGIQRDPDENLSDTLQKAKEVLQCHESLQNPLLSTSKSTRNYAKASRNVEESEKGSLKIEFQVHASEDESDGEISDTEKHGTKIGTLDSVTTEVLSCSTHAADEKRGDDQNLKTSRRPSTSPCNSTVDQKESELEMTSITSPHSGLLLDLKTSLAEAQVDDPVKPHVSYETEGFESTSLDAELQKSDVGQPSGPLLPELSKLGFPASLQRDLTRHISLKSKTGAHLPEPNLNSARRIRNISGHRKSETEKESGLKPTLRQILNASRRNVNWEQVIQQVTKKKQELGKGLPRFGIEMVPLVQNEQEDLDLDGEPDLSNLEGFQWEDISISSSPGLARKRSLSESSVIMDRASVYSFFSEESTGKENEPQQIFSPDNSLRSTQSQKTTMVLKQEVTPLAASLRIDERAEYDATQRRHSAQLSSDRTIPLMHLAKDLHSQESSTSPSENHNAQESNGEGNSLSSSASSALAISSLADAATDSSCTSGAEQNDGQSIRKKRRATGDGSSPELPSLERKNKRRKIKGKKERSQVDQLLNISLREEELSKSLQCLDNNLLQARAALQTAYVEVQRLLMLKQQITMEMSALRTHRIQILQGLQETYEPSERPDQVPCTLTREQRNVRPQTSADAPLLPNPFSPVFLEPPSSHVSPSSTGAPLQVIASTFQGHGSIPAPDSSVQIKQEPMSPEQDENVNAVSQGSACNVSKELLQANREISDSCPVYPVMTTALSLSELTERFHEPSQELKFSMEQGNIRNRGNTPSSQSAGLPSINKEGEEPTKGNSGSEACTSSFPRLSFASETPLEKEPHSPADQPDHQAESTLTSAETRGNKKKKKLRKKKTLRAAHVPENSDTEQDVFTAKPVRKVKTAKSAKGGKVTTSTWEDSRTGPEQESVRDEPDSDSSLEVLEIPNPQLEVVAIDSSESGEEKPDSPSKKDIWNPTERNLETSRSGCDEVSSTSEIGTRYEDGVPVSVAETQTVISSMKGSKNSSEISSEPGEDDEPTEGSFEGHQAAVNAIQIFGNLLYTCSADKTVRVYNLVSRKCIGVFEGHTSKVNCLLVTQTSGKSATLYTGSSDHTIRCYNVKTRECLEQLQLEDRVLCLHSRWRILYAGLANGTVVTFNIKNNKRLEIFECHGPRAVSCLATAQEGARKLLVVGSYDCTISVRDARNGLLLRTLEGHSKTILCMKVVNDLVFSGSSDQSVHAHNIHTGELVRIYKGHNHAVTVVNILGKVMVTACLDKFVRVYELQSHDRLQVYGGHKDMIMCMTIHKSMIYTGCYDGSIQAVRLNLMQNYRCWWHGCALIFGVIDHLKQHLLTDHTNPNFQTLKCRWKNCDAFFTARKGSKQDAAGHIERHAEDDSKIDS", "length": 1903, "header": "tr|A0A4X1V0Q0-1|A0A4X1V0Q0_PIG Isoform 1 of Zinc finger protein 106 OS=Sus scrofa OX=9823 GN=ZNF106 PE=4 SV=1 CANONICAL=A0A4X1V0Q0-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UY39-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V0Q0/entry#A0A4X1UY39-1", "sequence": { "sequence": "MVRERKCILCNTVYSSKKEMDEHMRSMLHHRELENLKGRFGIEMVPLVQNEQEDLDLDGEPDLSNLEGFQWEDISISSSPGLARKRSLSESSVIMDRASVYSFFSEESTGKENEPQQIFSPDNSLRSTQSQKTTMVLKQEVTPLAASLRIDERAEYDATQRRHSAQLSSDRTIPLMHLAKDLHSQESSTSPSENHNAQESNGEGNSLSSSASSALAISSLADAATDSSCTSGAEQNDGQSIRKKRRATGDGSSPELPSLERKNKRRKIKGKKERSQVDQLLNISLREEELSKSLQCLDNNLLQARAALQTAYVEVQRLLMLKQQITMEMSALRTHRIQILQGLQETYEPSERPDQVPCTLTREQRNVRPQTSADAPLLPNPFSPVFLEPPSSHVSPSSTGAPLQVIASTFQGHGSIPAPDSSVQIKQEPMSPEQDENVNAVSQGSACNVSKELLQANREISDSCPVYPVMTTALSLSELTERFHEPSQELKFSMEQGNIRNRGNTPSSQSAGLPSINKEGEEPTKGNSGSEACTSSFPRLSFASETPLEKEPHSPADQPDHQAESTLTSAETRGNKKKKKLRKKKTLRAAHVPENSDTEQDVFTAKPVRKVKTAKSAKGGKVTTSTWEDSRTGPEQESVRDEPDSDSSLEVLEIPNPQLEVVAIDSSESGEEKPDSPSKKDIWNPTERNLETSRSGCDEVSSTSEIGTRYEDGVPVSVAETQTVISSMKGSKNSSEISSEPGEDDEPTEGSFEGHQAAVNAIQIFGNLLYTCSADKTVRVYNLVSRKCIGVFEGHTSKVNCLLVTQTSGKSATLYTGSSDHTIRCYNVKTRECLEQLQLEDRVLCLHSRWRILYAGLANGTVVTFNIKNNKRLEIFECHGPRAVSCLATAQEGARKLLVVGSYDCTISVRDARNGLLLRTLEGHSKTILCMKVVNDLVFSGSSDQSVHAHNIHTGELVRIYKGHNHAVTVVNILGKVMVTACLDKFVRVYELQSHDRLQVYGGHKDMIMCMTIHKSMIYTGCYDGSIQAVRLNLMQNYRCWWHGCALIFGVIDHLKQHLLTDHTNPNFQTLKCRWKNCDAFFTARKGSKQDAAGHIERHAEDDSKIDS", "length": 1108, "header": "tr|A0A4X1UY39-1|A0A4X1V0Q0_PIG Computationally mapped isoform of Zinc finger protein 106 OS=Sus scrofa OX=9823 GN=ZNF106 PE=4 SV=1 CANONICAL=A0A4X1V0Q0-1" }, "locus": { "chromosome": "1", "start_pos": 128955742, "end_pos": 128913060, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042906.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042906.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050938.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050938.2" } ] } }, { "isoform_ac": "A0A4X1V0Q0-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V0Q0/entry#A0A4X1V0Q0-1", "sequence": { "sequence": "MVRERKCILCNTVYSSKKEMDEHMRSMLHHRELENLKGRDSSHECRVCGVTEVGLSAYAKHISGQLHKDNVDAQEREDDGKGEEEEEDYFDKELVQLIKQRDEQSRQDEPSNSSQEINSDDRRPQRRREDRVPYQDRENFSQPSWHHRGPPQRDWKWEKDGFNNTRKNSFPHSLRNSGGPRGCSGWHKGVAGSSSTWFHNHSNSGGGWHSSSGMVDWNHNGAGRNSSWHSEGTGGFSSWHMNSSNGNWKSNGRSANSWNYSGPGDKFQPSRNRNSNCQMEDMTMLWNKKSKSGKYSQGRYSWQRQENDKVGTVATYRGPSEGFTSDRFPSEGLLDFSFEQLESQTTKQTDNTASKIGGKNGSVAREKLHRWTPYPSQKTLDLQSGMKEVTGNKSEVIEKPLFDFSLITGGTKDPQVDETNNPSMLKTHKKKHTGSLSRKATSSCTASYEVVRESPITEKPEQEHKSNKTPSLKSPLLPIPATKSISQKQDSKNASKTTKTNSSFPGEHSNPLDKPIVEENQGSSSISKSQGSCPRVLKGNKSTSGIQRDPDENLSDTLQKAKEVLQCHESLQNPLLSTSKSTRNYAKASRNVEESEKGSLKIEFQVHASEDESDGEISDTEKHGTKIGTLDSVTTEVLSCSTHAADEKRGDDQNLKTSRRPSTSPCNSTVDQKESELEMTSITSPHSGLLLDLKTSLAEAQVDDPVKPHVSYETEGFESTSLDAELQKSDVGQPSGPLLPELSKLGFPASLQRDLTRHISLKSKTGAHLPEPNLNSARRIRNISGHRKSETEKESGLKPTLRQILNASRRNVNWEQVIQQVTKKKQELGKGLPRFGIEMVPLVQNEQEDLDLDGEPDLSNLEGFQWEDISISSSPGLARKRSLSESSVIMDRASVYSFFSEESTGKENEPQQIFSPDNSLRSTQSQKTTMVLKQEVTPLAASLRIDERAEYDATQRRHSAQLSSDRTIPLMHLAKDLHSQESSTSPSENHNAQESNGEGNSLSSSASSALAISSLADAATDSSCTSGAEQNDGQSIRKKRRATGDGSSPELPSLERKNKRRKIKGKKERSQVDQLLNISLREEELSKSLQCLDNNLLQARAALQTAYVEVQRLLMLKQQITMEMSALRTHRIQILQGLQETYEPSERPDQVPCTLTREQRNVRPQTSADAPLLPNPFSPVFLEPPSSHVSPSSTGAPLQVIASTFQGHGSIPAPDSSVQIKQEPMSPEQDENVNAVSQGSACNVSKELLQANREISDSCPVYPVMTTALSLSELTERFHEPSQELKFSMEQGNIRNRGNTPSSQSAGLPSINKEGEEPTKGNSGSEACTSSFPRLSFASETPLEKEPHSPADQPDHQAESTLTSAETRGNKKKKKLRKKKTLRAAHVPENSDTEQDVFTAKPVRKVKTAKSAKGGKVTTSTWEDSRTGPEQESVRDEPDSDSSLEVLEIPNPQLEVVAIDSSESGEEKPDSPSKKDIWNPTERNLETSRSGCDEVSSTSEIGTRYEDGVPVSVAETQTVISSMKGSKNSSEISSEPGEDDEPTEGSFEGHQAAVNAIQIFGNLLYTCSADKTVRVYNLVSRKCIGVFEGHTSKVNCLLVTQTSGKSATLYTGSSDHTIRCYNVKTRECLEQLQLEDRVLCLHSRWRILYAGLANGTVVTFNIKNNKRLEIFECHGPRAVSCLATAQEGARKLLVVGSYDCTISVRDARNGLLLRTLEGHSKTILCMKVVNDLVFSGSSDQSVHAHNIHTGELVRIYKGHNHAVTVVNILGKVMVTACLDKFVRVYELQSHDRLQVYGGHKDMIMCMTIHKSMIYTGCYDGSIQAVRLNLMQNYRCWWHGCALIFGVIDHLKQHLLTDHTNPNFQTLKCRWKNCDAFFTARKGSKQDAAGHIERHAEDDSKIDS", "length": 1903, "header": "tr|A0A4X1V0Q0-1|A0A4X1V0Q0_PIG Isoform 1 of Zinc finger protein 106 OS=Sus scrofa OX=9823 GN=ZNF106 PE=4 SV=1 CANONICAL=A0A4X1V0Q0-1" }, "locus": { "chromosome": "1", "start_pos": 128955742, "end_pos": 128913060, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062540.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062540.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055596.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055596.2" } ] } }, { "isoform_ac": "F1SI26-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V0Q0/entry#F1SI26-1", "sequence": { "sequence": "MPVGRIECPSSPSFPRDSSHECRVCGVTEVGLSAYAKHISGQLHKDNVDAQEREDDGKGEEEEEDYFDKELVQLIKQRDEQSRQDEPSNSSQEINSDDRRPQRRREDRVPYQDRENFSQPSWHHRGPPQRDWKWEKDGFNNTRKNSFPHSLRNSGGPRGCSGWHKGVAGSSSTWFHNHSNSGGGWHSSSGMVDWNHNGAGRNSSWHSEGTGGFSSWHMNSSNGNWKSNGRSANSWNYSGPGDKFQPSRNRNSNCQMEDMTMLWNKKSKSGKYSQGRYSWQRQENDKVGTVATYRGPSEGFTSDRFPSEGLLDFSFEQLESQTTKQTDNTASKIGGKNGSVAREKLHRWTPYPSQKTLDLQSGMKEVTGNKSEVIEKPLFDFSLITGGTKDPQVDETNNPSMLKTHKKKHTGSLSRKATSSCTASYEVVRESPITEKPEQEHKSNKTPSLKSPLLPIPATKSISQKQDSKNASKTTKTNSSFPGEHSNPLDKPIVEENQGSSSISKSQGSCPRVLKGNKSTSGIQRDPDENLSDTLQKAKEVLQCHESLQNPLLSTSKSTRNYAKASRNVEESEKGSLKIEFQVHASEDESDGEISDTEKHGTKIGTLDSVTTEVLSCSTHAADEKRGDDQNLKTSRRPSTSPCNSTVDQKESELEMTSITSPHSGLLLDLKTSLAEAQVDDPVKPHVSYETEGFESTSLDAELQKSDVGQPSGPLLPELSKLGFPASLQRDLTRHISLKSKTGAHLPEPNLNSARRIRNISGHRKSETEKESGLKPTLRQILNASRRNVNWEQVIQQVTKKKQELGKGLPRFGIEMVPLVQNEQEDLDLDGEPDLSNLEGFQWEDISISSSPGLARKRSLSESSVIMDRASVYSFFSEESTGKENEPQQIFSPDNSLRSTQSQKTTMVLKQEVTPLAASLRIDERAEYDATQRRHSAQLSSDRTIPLMHLAKDLHSQESSTSPSENHNAQESNGEGNSLSSSASSALAISSLADAATDSSCTSGAEQNDGQSIRKKRRATGDGSSPELPSLERKNKRRKIKGKKERSQVDQLLNISLREEELSKSLQCLDNNLLQARAALQTAYVEVQRLLMLKQQITMEMSALRTHRIQILQGLQETYEPSERPDQVPCTLTREQRNVRPQTSADAPLLPNPFSPVFLEPPSSHVSPSSTGAPLQVIASTFQGHGSIPAPDSSVQIKQEPMSPEQDENVNAVSQGSACNVSKELLQANREISDSCPVYPVMTTALSLSELTERFHEPSQELKFSMEQGNIRNRGNTPSSQSAGLPSINKEGEEPTKGNSGSEACTSSFPRLSFASETPLEKEPHSPADQPDHQAESTLTSAETRGNKKKKKLRKKKTLRAAHVPENSDTEQDVFTAKPVRKVKTAKSAKGGKVTTSTWEDSRTGPEQESVRDEPDSDSSLEVLEIPNPQLEVVAIDSSESGEEKPDSPSKKDIWNPTERNLETSRSGCDEVSSTSEIGTRYEDGVPVSVAETQTVISSMKGSKNSSEISSEPGEDDEPTEGSFEGHQAAVNAIQIFGNLLYTCSADKTVRVYNLVSRKCIGVFEGHTSKVNCLLVTQTSGKSATLYTGSSDHTIRCYNVKTRECLEQLQLEDRVLCLHSRWRILYAGLANGTVVTFNIKNNKRLEIFECHGPRAVSCLATAQEGARKLLVVGSYDCTISVRDARNGLLLRTLEGHSKTILCMKVVNDLVFSGSSDQSVHAHNIHTGELVRIYKGHNHAVTVVNILGKVMVTACLDKFVRVYELQSHDRLQVYGGHKDMIMCMTIHKSMIYTGCYDGSIQAVRLNLMQNYRCWWHGCALIFGVIDHLKQHLLTDHTNPNFQTLKCRWKNCDAFFTARKGSKQDAAGHIERHAEDDSKIDS", "length": 1880, "header": "tr|F1SI26-1|A0A4X1V0Q0_PIG Computationally mapped isoform of Zinc finger protein 106 OS=Sus scrofa OX=9823 GN=ZNF106 PE=4 SV=3 CANONICAL=A0A4X1V0Q0-1" }, "locus": { "chromosome": "1", "start_pos": 128955742, "end_pos": 128926780, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005218.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005218.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005092.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005092.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., 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"header": "tr|A0A5G2R206-1|F1S7J6_PIG Computationally mapped isoform of Scaffold attachment factor B OS=Sus scrofa OX=9823 GN=SAFB PE=1 SV=1 CANONICAL=F1S7J6-1" }, "locus": { "chromosome": "2", "start_pos": 73334384, "end_pos": 73300808, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088087.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088087.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064563.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064563.1" } ] } }, { "isoform_ac": "F1S7J6-1", "url": "https://www.uniprot.org/uniprotkb/F1S7J6/entry#F1S7J6-1", "sequence": { "sequence": "MGRRDRERRTRAGCACAGARRAGAAGAVPSQAAPFCARSRDKSCPVLCEVGGGARVPGMAEALSGLGDSSAAGAAALSSASSETGTRRLSDLRVIDLRAELRKRNLDSSGNKSVLMERLKKAIEDEGGNPDEIEITSEGNKKTSKRSNKGRKPEEEGVEDNGLEENSGDGQEDVETSLENLQDIDMMDISVLDEAEIDNGSVADCVEDEDADNLPESLSDSRELVEGEMKELPEQLQEHAIEDKETINNLDTSSSDFTILQMRTNEMWTDFQEIEEPSLEPENEKILDILGETCKSEPVKEEGSELEQPFAQDTSSVGPDRKLAEEEDLFGSAHPEEGDLDLASESTAQAQSSKADTLLAVVKREPVEQTGDGERTDCEPVGLEKPVEQSSKASEHAEACSEEAAEAPPEASSPEPRDSKEDVKKFAFEACNEVPPAPKESSASEGADQKMSSVEDDSDPKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEPVGKKTSDKREGEGKKEKSNNADRSANLKREDKIDRKDDAKKSEDGSGEKSKEQDDQKPGPSERSRTTKSGSRGTERTVVMDKSKGVPVISVKTSGSKERVSKSQDRKSASREKRSVVSFDKVKEPRKSRDSESRRVRERSEREQRMQAQLEREERERLAIARERLAFHRHRLERERMERERLERERMHVEHERRREQERIHREREELRRQQELRYEQERRPAVRRPYDVDGRRDDAYWPEAKRAALDERYHSDFNRQDRFHDFDHRDRGRYPDHSVDRREGSRSMMGEREGQHYPERHGGPERHGRDSRDGWGGYGSDKRMSEGRGLPPPPRRDWGDHGRRIEDDRAWQGAADGGMIDRDHKRWQGGERSMSGHSGPGHMMNRGGMSGRGSFAPGGASRGHVIPRGGMQGGFGGQNRGSRPNDARFTRRY", "length": 985, "header": "tr|F1S7J6-1|F1S7J6_PIG Isoform 1 of Scaffold attachment factor B OS=Sus scrofa OX=9823 GN=SAFB PE=1 SV=3 CANONICAL=F1S7J6-1" }, "locus": { "chromosome": "2", "start_pos": 73334384, "end_pos": 73300808, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014769.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014769.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014369.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014369.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R206", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R206" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3899300", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3899300", "resource": "Reactome", "description": "SUMOylation of transcription cofactors" } ], "orthologs": [ { "uniprot_canonical_ac": "D3YXK2-1", "protein_name": "Scaffold attachment factor B1", "gene_name": "Safb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETLSGLGDASAAGAAAVSSAASETGTRRLSDLRVIDLRAELKKRNLDSSGNKSVLMERLKKAIEDEGGNPDEIEVTSECNKKMPKRPSKGRKPEDEGVEDNGLEENSGDGQEDVETSLENLQDMDMMDISVLDEADIDNGSVADCVEEEEEATLPEGLADSTELVEGDLKGLPEQLQEHAIDDKDTVNNVDTSSSDFTMLQEMEEASLEPENEKILDILGETCKSEPVKEEGSELEQPFAQATSSVGPDRKLAEEEDLFESCGHPEEEEEEEEEDQEEEQEEEGDLALASSSKSESPSTRCQWSEADAPLAVVKREPADAPGGGTGMDREPVGLEEPVEQSSTAAQLPEATSQELVRAPTAALSPEPQDSKEDVKKFAFDACNDVPAPPKESSASEGADQKMSSVEEDSDTKRLSREEKGRSSCGRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCISHLHKTELHGKMISVEKAKSEPTGKRVPDRRDGDSKKEKASTSDRSANLKREEKGERKDDAKKTDDGSTEKSKDADDQKPGPSERSRTTKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASKSQDRKSASREKRSVVSFDKVKESRKSRDSESRRERERSEREQRLQAQWEREERERLEIARERLAFHRHRLERERMERERLERERMHVEQERRREQERIHREREELRRQQELRYEQERRPAVRRPYEVDGRRDDAYWPEAKRAALDDRYHSDFSRQDRFHDFDHRDRGRYPNHSVDRREGSRSMMGDREGQHYPERHGGPERHGRDSRDGWGYGSNKRLSEGRGLPPPPRRDWGEHGRRLEDDRAWQGTADGGMMERDHKRWQGGERSMSGHSGPGHMMNRGGMSGRGSFAPGGASRGHVIPRGGMQAGFGGQSRGSRPSDARFTRRY", "length": 937 }, "evidence": [ { "id": "F1S7J6", "url": 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"MAESQSAAGLGELTSPGGAVTLGSEPETRRLSELRVIDLRAELKRRNLDTGGNKSVLMERLRKAIEDEGGDPDEIPMASELTNKRLSKRMSKGRKSEEEGVEDNGLEENSRDGQEDIEASLDTLQDIDMMDISVLDEAEIDNSSAVDCGEDYSPDNILDSLSDNKDNVDAEMKELPDQLTENEEDYDEIENNVDSSSDLIEMKKMEKLHLEPENEKILDILGETCKSELLNEETSEAEQPHAQEASNVVPGKRLAEEEDALGAAQSEEDALDLDSKSAQAMARKEAKRLVVAKGETSEQTIEEEKLDSDSVGVESVSDQSSKRCQGLEASSGETAERGAGPEGKDSKEDGKKAEDKANSEESPATKESSASEGGDQKKSPVEEDRDTKLISKDEKGRTAGGSGRNFWVSGLASTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCITHLHKTELHGKIISVEKAKNEPAGKKPTEKKENESKKETASERPSSSKRDEKCDQKDDSKKAEDKDEKERKEKDEQKSASSDQPKSSKSGSKGTERTVVMDKSKGEPVISVKTSTTSKDRSVKSQDRKSESRERQGIVPFDKIKAQRKMREAEQRRTRERRERQQHLQTIREREERERLEIARERLEIERQRLERERMERERLERERMHIEHERRREQDRIQREREELRRQHEQLRYEQERRSAMRRPYDIDGRRDDPYWPEAKRMAMNDRYHSDFGRQDRFHDFDHRDRGRYQDHSLDRRDGSRTMMGDRDGQHYPDERHGGPERHSRDSRESWGSYGSDRRMSESRGIPPPSRDGRDWGDHGRKFEGHQERSWQSSVDGGMMGRDHERWQGGGRGRPGHVMHRGGMSGRGGFMQGGNQSQMMHGGGMQGEGFAGQERASRPNDPRFNRRY", "length": 914 }, "evidence": [ { "id": "F1S7J6", "url": 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"MAETLSGLGDSGAASAAAVSSAASETGTRRLSDLRVIDLRAELRKRNLTSSGNKSVLMERLKKAIEEEGGNPDEIEVISEGNKKMPKRPSKGKKPEDEGVEDNGLEENSGDGQEDVETSLENLQDMDMMDISVLDEADIDNGSVADCVEEEEEATLPEGLGLLRIGRLQSKGLPEQLQELAIDDKEAINNVDTSSSDFTILQEMEEASLEPENEKILDILGETCKSEPVKEEGSELEQPFAQATSSVGPDRKLAEEEDLFESCGHPEEEEEEEEEEEQEEEQEEEGDLALASSSKSESSSTRCQWSEADALLAVVKREPAEAPGGGTGMDREPVGLEEPVEQSSTAAQLPETTSQELVRAPTAAPSPEPRDSKDDVKKFAFDACNDVPAAPKESSASEGADQKMSSVEDDSDTKRLSREEKGRSSCGRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKSEPAGKRVPDRRDGDSKKEKTSTSDRSANLKREEKGDRKDDAKKTDDGSTEKSKDADDQKPGPSERSRTTKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASKSQDRKSVSREKRSVVSFDKVKESRKSRDSESRRERERERSEREQRLQAQWEREERERLEIARERLAFHRHRLERERMERERLERERMHVEQERRREQERIHREREELRRQQELRYEQERRPAVRRPYEVDGRRDDAYWPEAKRAALDDRYHSDFSRQDRFHDFDHRDRGRYPNHSVDRREGSRSMMGDREGQHYPERHGGPERHGRDSRDGWGYGSNKRLSEGRGLPLLPRRDWGEHARRLEDDRAWQGTADGGMMERDQQRWQGGERSMSGHSGPGHMMNRGGMSGRGSFAPGGASRRHVIPRGGMQAGFGGTEPGQQTQ", "length": 931 }, "evidence": [ { "id": "F1S7J6", "url": 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"MAETLSGLGDSGAAGAAALSSASSETGTRRLSDLRVIDLRAELRKRNVDSSGNKSVLMERLKKAIEDEGGNPDEIEITSEGNKKTSKRSSKGRKPEEEGVEDNGLEENSGDGQEDVETSLENLQDIDIMDISVLDEAEIDNGSVADCVEDDDADNLQESLSDSRELVEGEMKELPEQLQEHAIEDKETINNLDTSSSDFTILQEIEEPSLEPENEKILDILGETCKSEPVKEESSELEQPFAQDTSSVGPDRKLAEEEDLFDSAHPEEGDLDLASESTAHAQSSKADSLLAVVKREPAEQPGDGERTDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPSPEARDSKEDGRKFDFDACNEVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSTNLKRDDKCDRKDDAKKGDDGSGEKSKDQDDQKPGPSERSRATKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASKSQDRKSASREKRSVVSFDKVKEPRKSRDSESHSRVRERSEREQRMQAQWEREERERLEIARERLAFQRQRLERERMERERLERERMHVEHERRREQERIHREREELRRQQELRYEQERRPAVRRPYDLDRRDDAYWPEAKRAALDERYHSDFNRQDRFHDFDHRDRGRYPDHSVDRREGSRSMMGEREGQHYPERHGGPERHGRDSRDGWGGYGSDKRMSEGRGLPPPPRRDWGDHGRREDDRSWQGTADGGMMDRDHKRWQGGERSMSGHSGPGHMMNRGGMSGRGSFAPGGASRGHPIPHGGMQGGFGGQSRGSRPSDARFTRRY", "length": 915 }, "evidence": [ { "id": "F1S7J6", "url": 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"GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S7J6", "url": "https://www.uniprot.org/uniprotkb/F1S7J6" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S7J6", "url": "https://www.uniprot.org/uniprotkb/F1S7J6" } ], "pmid": "" }, { "name": "midbody", "id": "GO:0030496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030496", "evidence": [ { "database": "UniProtKB", "id": "F1S7J6", "url": "https://www.uniprot.org/uniprotkb/F1S7J6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1S7J6", "url": "https://www.uniprot.org/uniprotkb/F1S7J6" } ], "pmid": "" }, { "name": "estrogen receptor signaling pathway", "id": "GO:0030520", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030520", "evidence": [ { "database": "UniProtKB", "id": "F1S7J6", "url": "https://www.uniprot.org/uniprotkb/F1S7J6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S7J6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 985, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S7J6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S7J6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S7J6", "database": "UniProtKB", "url": 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Classification" ] }, { "id": "cd22484", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22484", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22487", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22487", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525995", "url": "https://www.ncbi.nlm.nih.gov/gene/100525995", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036612", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036612", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048250", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048250", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048252", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048252", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10288", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10288", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00013", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00013", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09005", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09005", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020952092", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952092", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZPN8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZPN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPN8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8D4", "url": "https://www.uniprot.org/uniprotkb/A0A287A8D4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8D4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABG1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ASG1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ASG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BMF7", "url": "https://www.uniprot.org/uniprotkb/A0A287BMF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BMF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BMF7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9S9", "url": "https://www.uniprot.org/uniprotkb/F1S9S9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9S9-1", "url": "https://www.uniprot.org/uniprotkb/F1S9S9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAKIGGDAGTSLNSNDYGYGGQKRPLEDGDGSWTSPSSTTHWEGMPSPFKDQPDAKKVAPQNDSFGTQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNGQGDQQNPAPAGQVDYTKAWEEYYKKMGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQGQ", "length": 664, "header": "tr|F1S9S9-1|F1S9S9_PIG Isoform 1 of Far upstream element-binding protein 1 OS=Sus scrofa OX=9823 GN=FUBP1 PE=1 SV=3 CANONICAL=F1S9S9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZPN8-1", "url": "https://www.uniprot.org/uniprotkb/F1S9S9/entry#A0A286ZPN8-1", "sequence": { "sequence": "MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAKIGGDAGTSLNSNDYGYGGQKRPLEDGDQPDAKKVAPQNDSFGTQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNGQGDQQNPAPAGQVDYTKAWEEYYKKMGQQGQTQDYSKAWEEYYKKQGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQV", "length": 662, "header": "tr|A0A286ZPN8-1|F1S9S9_PIG Computationally mapped isoform of Far upstream element-binding protein 1 OS=Sus scrofa OX=9823 GN=FUBP1 PE=1 SV=1 CANONICAL=F1S9S9-1" }, "locus": { "chromosome": "6", "start_pos": 135313601, "end_pos": 135281656, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054676.1", "url": "https://www.ensembl.org/id/ENSSSCT00000054676.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033566.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033566.1" } ] } }, { "isoform_ac": "A0A287A8D4-1", "url": "https://www.uniprot.org/uniprotkb/F1S9S9/entry#A0A287A8D4-1", "sequence": { "sequence": "MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAKIGGDAGTSLNSNDYGYGGQKRPLEDGDQPDAKKVAPQNDSFGTQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPGDQQNPAPAGQVDYTKAWEEYYKKMGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQGQ", "length": 600, "header": "tr|A0A287A8D4-1|F1S9S9_PIG Computationally mapped isoform of Far upstream element-binding protein 1 OS=Sus scrofa OX=9823 GN=FUBP1 PE=1 SV=2 CANONICAL=F1S9S9-1" }, "locus": { "chromosome": "6", "start_pos": 135313976, "end_pos": 135281656, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053943.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053943.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040241.3", "url": "https://www.ensembl.org/id/ENSSSCP00000040241.3" } ] } }, { "isoform_ac": "A0A287ABG1-1", "url": "https://www.uniprot.org/uniprotkb/F1S9S9/entry#A0A287ABG1-1", "sequence": { "sequence": "MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAKIGGDAGTSLNSNDYGYGGQKRPLEDGDQPDAKKVAPQNDCKYLFNRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNGQGDQQNPAPAGQVDYTKAWEEYYKKMGQQGQTQDYSKAWEEYYKKQGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQV", "length": 655, "header": "tr|A0A287ABG1-1|F1S9S9_PIG Computationally mapped isoform of Far upstream element-binding protein 1 OS=Sus scrofa OX=9823 GN=FUBP1 PE=1 SV=2 CANONICAL=F1S9S9-1" }, "locus": { "chromosome": "6", "start_pos": 135313601, "end_pos": 135281656, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054267.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054267.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041158.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041158.2" } ] } }, { "isoform_ac": "A0A287ASG1-1", "url": "https://www.uniprot.org/uniprotkb/F1S9S9/entry#A0A287ASG1-1", "sequence": { "sequence": "MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAKIGGDAGTSLNSNDYGYGGQKRPLEDGDQPDAKKVAPQNDSFGTQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNGQGDQQNPAPAGQVDYTKAWEEYYKKMGQQGQTQDYSKAWEEYYKKQGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQGQ", "length": 663, "header": "tr|A0A287ASG1-1|F1S9S9_PIG Computationally mapped isoform of Far upstream element-binding protein 1 OS=Sus scrofa OX=9823 GN=FUBP1 PE=1 SV=2 CANONICAL=F1S9S9-1" }, "locus": { "chromosome": "6", "start_pos": 135313976, "end_pos": 135281656, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048540.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048540.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047010.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047010.2" } ] } }, { "isoform_ac": "A0A287BMF7-1", "url": "https://www.uniprot.org/uniprotkb/F1S9S9/entry#A0A287BMF7-1", "sequence": { "sequence": "MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAKIGGDAGTSLNSNDYGYGGQKRPLEDGVFFKCSSFLKHYFYHKVPKIVRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNGQGDQQNPAPAGQVDYTKAWEEYYKKMGQQGQTQDYSKAWEEYYKKQGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQV", "length": 637, "header": "tr|A0A287BMF7-1|F1S9S9_PIG Computationally mapped isoform of Far upstream element-binding protein 1 OS=Sus scrofa OX=9823 GN=FUBP1 PE=1 SV=3 CANONICAL=F1S9S9-1" }, "locus": { "chromosome": "6", "start_pos": 135313601, "end_pos": 135281656, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055676.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055676.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057358.3", "url": "https://www.ensembl.org/id/ENSSSCP00000057358.3" } ] } }, { "isoform_ac": "F1S9S9-1", "url": "https://www.uniprot.org/uniprotkb/F1S9S9/entry#F1S9S9-1", "sequence": { "sequence": "MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAKIGGDAGTSLNSNDYGYGGQKRPLEDGDGSWTSPSSTTHWEGMPSPFKDQPDAKKVAPQNDSFGTQLPPMHQQQRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKTGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNGQGDQQNPAPAGQVDYTKAWEEYYKKMGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQGQ", "length": 664, "header": "tr|F1S9S9-1|F1S9S9_PIG Isoform 1 of Far upstream element-binding protein 1 OS=Sus scrofa OX=9823 GN=FUBP1 PE=1 SV=3 CANONICAL=F1S9S9-1" }, "locus": { "chromosome": "6", "start_pos": 135313976, "end_pos": 135281656, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004169.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004169.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004075.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004075.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZPN8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPN8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1S9S9", "url": "https://www.uniprot.org/uniprotkb/F1S9S9" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1S9S9", "url": "https://www.uniprot.org/uniprotkb/F1S9S9" } ], "pmid": "" }, { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "F1S9S9", "url": "https://www.uniprot.org/uniprotkb/F1S9S9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S9S9", "url": "https://www.uniprot.org/uniprotkb/F1S9S9" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S9S9", "url": "https://www.uniprot.org/uniprotkb/F1S9S9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S9S9", "url": "https://www.uniprot.org/uniprotkb/F1S9S9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1S9S9", "url": "https://www.uniprot.org/uniprotkb/F1S9S9" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1S9S9", "url": "https://www.uniprot.org/uniprotkb/F1S9S9" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1S9S9", "url": "https://www.uniprot.org/uniprotkb/F1S9S9" } ], "pmid": "" }, { "name": "positive regulation of gene expression", "id": "GO:0010628", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010628", "evidence": [ { "database": "UniProtKB", "id": "F1S9S9", "url": "https://www.uniprot.org/uniprotkb/F1S9S9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9S9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9S9" }, { "id": "SM00322", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00322" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "K Homology", "eco_id": "ECO_0000259", "start_pos": 119, "end_pos": 189, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SAH4-1", "uniprot_ac": "F1SAH4", "uniprot_id": "F1SAH4_PIG", "mass": { "chemical_mass": 75917.0, "monoisotopic_mass": 75917.0 }, "refseq": { "ac": "XP_013834918", "name": "phospholipid transfer protein C2CD2L isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013834918" }, "gene_names": [ { "name": "C2CD2L", "type": "recommended", "evidence": [ { "id": "F1SAH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAH4" } ] }, { "name": "C2CD2L", "type": "synonym", "evidence": [ { "id": "XP_013834918", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013834918" } ] } ], "protein_names": [ { "name": "C2CD2 like", "type": "synonym", "evidence": [ { "id": "F1SAH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAH4/entry#names_and_taxonomy" } ] }, { "name": "phospholipid transfer protein C2CD2L isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013834918", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013834918" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAH4", "url": "https://www.uniprot.org/uniprotkb/F1SAH4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C2CD2L", "url": "https://www.uniprot.org/uniprotkb/F1SAH4", "locus": { "chromosome": "9", "start_pos": 46331078, "end_pos": 46321817, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015111", "url": "https://www.ensembl.org/id/ENSSSCG00000015111" } ] } } ], "crossref": [ { "id": "F1SAH4", "url": "https://alphafold.ebi.ac.uk/entry/F1SAH4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015111", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015111", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21683", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21683", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518141", "url": "https://www.ncbi.nlm.nih.gov/gene/100518141", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039934", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039934", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518141", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518141", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SWAFKDC", "url": "https://omabrowser.org/oma/group/SWAFKDC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAH4", "url": "https://www.orthodb.org/?gene=F1SAH4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21119", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21119", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21119:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21119:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18696", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18696", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013834918", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013834918", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZQJ3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZQJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAH4", "url": "https://www.uniprot.org/uniprotkb/F1SAH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAH4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAH4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPGWGQQDMGWAALLILFAASLLTVFGWLLQYARGLWLARSRGGRGPGPALAAEPAGSLRELGVWRSLLRLRGTRAGAPEEPGVRGLLASLFAFKSFRENWQRAWVRALNEQACRDGSSIQIAFEEVPQLPPRASISRVTCVDQSERTMVLHCQLSAEEVMFPVSVTQQSPAAVSMETYHVTLTLPPTQLEVHLEEIPGEGLLVSWAFADRPDLRLTVLPKLQARERGEEQVELSTIEELIEDAIVSTQPAMVVNLRACSAPGGPIPSEKPATVPQAQPATPRPTRLFLRQLRASNLGSELEGSGEVCCVAELDVPMQQKWTKPMRAGPEVEWSEDLTLNLGPQSQELTLKVLRSSSRGDTELLGQATLNVGAPSRPLTRRQVCPLTPGPGKALGQAATLAVELQYEEGSPRNLGTSTPSTPRPSITPTKKIELDRTIMPDGTIVTTVTTVQSRPRVDGKLDSPSRSPSKVEVTEKTTTVLSESGGPGSTSHSSSPGESHLSNGLDPVAETAIRQLTEPSGRAAKKTPTKRSTLIISGVSKVPIAQDELALSLGYAASLEASMQEDAGTSGGPSSPPSDPPATSPGPLDALSSPTSVQEADETTRSDISERPSVDDVESETGSTGALETRSLKDHKVSFLRSGTKLIFRRRPRQKEAGLSQSHDDLSNTTATPSVRKKAGSFSRRLIKRFSFKSKPKANGNPSPQL", "length": 707, "header": "tr|F1SAH4-1|F1SAH4_PIG Isoform 1 of C2CD2 like OS=Sus scrofa OX=9823 GN=C2CD2L PE=1 SV=2 CANONICAL=F1SAH4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZQJ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SAH4/entry#A0A286ZQJ3-1", "sequence": { "sequence": "MDPGWGQQDMGWAALLILFAASLLTVFGWLLQYARGLWLARSRGGRGPGPALAAEPAGSLRELGVWRSLLRLRGTRAGAPEEPGVRGLLASLFAFKSFRENWQRAWVRALNEQACRDGSSIQIAFEEVPQLPPRASISRVTCVDQSERTMVLHCQLSAEEVMFPVSVTQQSPAAVSMETYHVTLTLPPTQRGEEQVELSTIEELIEDAIVSTQPAMVVNLRACSAPGGPIPSEKPATVPQAQPATPRPTRLFLRQLRASNLGSELEGSGEVCCVAELDVPMQQKWTKPMRAGPEVEWSEDLTLNLGPQSQELTLKVLRSSSRGDTELLGQATLNVGAPSRPLTRRQVCPLTPGPGKALGQAATLAVELQYEEGSPRNLGTSTPSTPRPSITPTKKIELDRTIMPDGTIVTTVTTVQSRPRVDGKLDSPSRSPSKVEVTEKTTTVLSESGGPGSTSHSSSRESHLSNGLDPVAETAIRQLTEPSGRAAKKTPTKRSTLIISGVSKVPIAQDELALSLGYAASLEASMQEDAGTSGGPSSPPSDPPATSPGPLDALSSPTSVQEADETTRSDISERPSVDDVESETGSTGALETRSLKDHKVSFLRSGTKLIFRRRPRQKEAGLSQSHDDLSNTTATPSVRKKAGSFSRRLIKRFSFKSKPKANGNPSPQL", "length": 669, "header": "tr|A0A286ZQJ3-1|F1SAH4_PIG Computationally mapped isoform of C2CD2 like OS=Sus scrofa OX=9823 GN=C2CD2L PE=1 SV=1 CANONICAL=F1SAH4-1" }, "locus": { "chromosome": "9", "start_pos": 46330188, "end_pos": 46322179, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064254.2", "url": "https://www.ensembl.org/id/ENSSSCT00000064254.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033723.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033723.1" } ] } }, { "isoform_ac": "F1SAH4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAH4/entry#F1SAH4-1", "sequence": { "sequence": "MDPGWGQQDMGWAALLILFAASLLTVFGWLLQYARGLWLARSRGGRGPGPALAAEPAGSLRELGVWRSLLRLRGTRAGAPEEPGVRGLLASLFAFKSFRENWQRAWVRALNEQACRDGSSIQIAFEEVPQLPPRASISRVTCVDQSERTMVLHCQLSAEEVMFPVSVTQQSPAAVSMETYHVTLTLPPTQLEVHLEEIPGEGLLVSWAFADRPDLRLTVLPKLQARERGEEQVELSTIEELIEDAIVSTQPAMVVNLRACSAPGGPIPSEKPATVPQAQPATPRPTRLFLRQLRASNLGSELEGSGEVCCVAELDVPMQQKWTKPMRAGPEVEWSEDLTLNLGPQSQELTLKVLRSSSRGDTELLGQATLNVGAPSRPLTRRQVCPLTPGPGKALGQAATLAVELQYEEGSPRNLGTSTPSTPRPSITPTKKIELDRTIMPDGTIVTTVTTVQSRPRVDGKLDSPSRSPSKVEVTEKTTTVLSESGGPGSTSHSSSPGESHLSNGLDPVAETAIRQLTEPSGRAAKKTPTKRSTLIISGVSKVPIAQDELALSLGYAASLEASMQEDAGTSGGPSSPPSDPPATSPGPLDALSSPTSVQEADETTRSDISERPSVDDVESETGSTGALETRSLKDHKVSFLRSGTKLIFRRRPRQKEAGLSQSHDDLSNTTATPSVRKKAGSFSRRLIKRFSFKSKPKANGNPSPQL", "length": 707, "header": "tr|F1SAH4-1|F1SAH4_PIG Isoform 1 of C2CD2 like OS=Sus scrofa OX=9823 GN=C2CD2L PE=1 SV=2 CANONICAL=F1SAH4-1" }, "locus": { "chromosome": "9", "start_pos": 46330188, "end_pos": 46322179, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016477.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016477.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016034.2", "url": "https://www.ensembl.org/id/ENSSSCP00000016034.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 673, "start_aa": "Thr", "end_pos": 673, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr673", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZQJ3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQJ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518141", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518141", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F7EUW3-1", "protein_name": "C2CD2-like", "gene_name": "C2cd2l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDPDWGQRDVGWAALLVLFAASLLTVLGWLLQYARGLWLSRAGGGRDSRPASAAEPGGSLRELGVWRSLLRLRATRSSAPEEAGVRGLLASLFAFKSFRENWQRAWVRALNEQACRDGSSIQIAFEEIPQLPPRASISHVTCVDQSERTMVLHCQLAAEEVRFPISVTQQSPAAVSMETYHVTLTLPPTQLEVSLEEIPDEGLLVSWAFTDRPDLSLKVLPKSQTRERDEEQPELSTVEELIKDAIVSTQPAMMVNLRACSAPGGLVPSEKPPTMSQAQPSIPRPTRLFLRQLRASHLGSELGGTEELCCAAELDNPMQQKWTKPTRAGSEVEWAEDLALDLGPQSRELTLKVLRSSSCGDAELLGQATLPVGSPSKPLSRRQVCPLTPGPGKSLSPAAIVTVELHYEQGSPRNLGTPTSSTPRPSITPTKKIELDRTIMPDGTIVTTVTTVQSRPRVDGKLADSPSRSPSKVEVTEKMTTVLSESSGPSNASHSSSPGESHLSNGLDPVAETAIRQLTEPSGRAAKKTPTKRSTLIISGVSKVPIAQDELALSLGYAASLEASMQDDAGASGGPSSPPSDPSATSPGPVDALSSPTSVQEADETTRSDISERPSVDDVESETGSTGALETRSLKDHKVSFLRSGTKLIFRRRPRQKEAGLSQSHDDLSNTTATPSVRKKAGSFSRRLIKRFSFKSKPKANGNPSPQL", "length": 708 }, "evidence": [ { "id": "F1SAH4", "url": "https://omabrowser.org/oma/group/F1SAH4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O14523-1", "protein_name": "Phospholipid transfer protein C2CD2L", "gene_name": "C2CD2L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPGWGQRDVGWAALLILFAASLLTVFAWLLQYARGLWLARARGDRGPGPALAGEPAGSLRELGVWRSLLRLRATRAGAAEEPGVRGLLASLFAFKSFRENWQRAWVRALNEQACRNGSSIQIAFEEVPQLPPRASISHVTCVDQSEHTMVLRCQLSAEEVRFPVSVTQQSPAAVSMETYHVTLTLPPTQLEVNLEEIPGEGLLISWAFTDRPDLSLTVLPKLQARERGEEQVELSTIEELIKDAIVSTQPAMMVNLRACSAPGGLVPSEKPPMMPQAQPAIPRPNRLFLRQLRASHLGNELEGTEELCCVAELDNPMQQKWTKPARAGSEVEWTEDLALDLGPQSRELTLKVLRSSSCGDTELLGQATLPVGSPSRPLSRRQLCPLTPGPGKALGPAATMAVELHYEEGSPRNLGTPTSSTPRPSITPTKKIELDRTIMPDGTIVTTVTTVQSRPRIDGKLDSPSRSPSKVEVTEKTTTVLSESSGPSNTSHSSSRDSHLSNGLDPVAETAIRQLTEPSGRVAKKTPTKRSTLIISGVSKVPIAQDELALSLGYAASLEASVQDDAGTSGGPSSPPSDPPAMSPGPLDALSSPTSVQEADETTRSDISERPSVDDIESETGSTGALETRSLKDHKVSFLRSGTKLIFRRRPRQKEAGLSQSHDDLSNATATPSVRKKAGSFSRRLIKRFSFKSKPKANGNPSPQL", "length": 706 }, "evidence": [ { "id": "F1SAH4", "url": "https://omabrowser.org/oma/group/F1SAH4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80X80-1", "protein_name": "Phospholipid transfer protein C2CD2L", "gene_name": "C2cd2l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPDWGQRDVGWAALLVLFAASLITVLGWMLQYARGLWLSRADGGRDSRPASAAEPGGSLRELGVWRSLLRLRATRTSTPEEAGVRGLLASLFAFKSFRENWQRAWVRALNEQACRDGSSIQIAFEEIPQLPPRASISHVTCVDQSERTMVLHCQLSAEEVRFPISVTQQSPAAVSMETYHVTLTLPPTQLEVSLEEIPDEGLLVSWAFTDRPELSLKVLPKLQTRERDEEQPELSTVEELIKDAIVSTQPAMMVNLRACSAPGGLVPSEKPPTMSQAQPSIPRPTRLFLRQLRASHLGSELGGTEELCCAAELDNPMQQKWTKPMRAGPEVEWTEDLALDLGPQSRELTLKVLRSSSCGDAELLGQATLPVGSPSRPMSRRQVCPLTPGPGKSLSPAATVTAELHYEQGSPRNLGTPTSSTPRPSITPTKKIELDRTIMPDGTVVTTVTTVQSRPRVDGKLDSPSRSPSKVEVTEKMTTVLSESSGPSNASHSSSRESHLSNGLDPVAETAIRQLTEPSGRAAKKTPTKRSTLIISGVSKVPIAQDELALSLGYAASLEASMQDDAGTSGGPSSPPSDPSATSPGPVDALSSPTSVQEADETTRSDISERPSVDDVESETGSTGALETRSLKDHKVSFLRSGTKLIFRRRPRQKEAGLSQSHDDLSNTTATPSVRKKAGSFSRRLIKRFSFKSKPKANGNPSPQL", "length": 706 }, "evidence": [ { "id": "F1SAH4", "url": "https://omabrowser.org/oma/group/F1SAH4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasmic side of apical plasma membrane", "id": "GO:0098592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098592", "evidence": [ { "database": "UniProtKB", "id": "F1SAH4", "url": "https://www.uniprot.org/uniprotkb/F1SAH4" } ], "pmid": "" }, { "name": "cortical endoplasmic reticulum", "id": "GO:0032541", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032541", "evidence": [ { "database": "UniProtKB", "id": "F1SAH4", "url": "https://www.uniprot.org/uniprotkb/F1SAH4" } ], "pmid": "" }, { "name": "endoplasmic reticulum-plasma membrane contact site", "id": "GO:0140268", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140268", "evidence": [ { "database": "UniProtKB", "id": "F1SAH4", "url": "https://www.uniprot.org/uniprotkb/F1SAH4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of insulin secretion involved in cellular response to glucose stimulus", "id": "GO:0035774", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035774", "evidence": [ { "database": "UniProtKB", "id": "F1SAH4", "url": "https://www.uniprot.org/uniprotkb/F1SAH4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "phosphatidylinositol binding", "id": "GO:0035091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035091", "evidence": [ { "database": "UniProtKB", "id": "F1SAH4", "url": "https://www.uniprot.org/uniprotkb/F1SAH4" } ], "pmid": "" }, { "name": "phosphatidylinositol transfer activity", "id": "GO:0008526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008526", "evidence": [ { "database": "UniProtKB", "id": "F1SAH4", "url": "https://www.uniprot.org/uniprotkb/F1SAH4" } ], "pmid": "" }, { "name": "insulin binding", "id": "GO:0043559", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043559", "evidence": [ { "database": "UniProtKB", "id": "F1SAH4", "url": "https://www.uniprot.org/uniprotkb/F1SAH4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 669, "end_pos": 671, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAH4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 707, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAH4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAH4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAH4" }, { "id": "PS50004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 268, "end_pos": 389, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 673 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 669, "end_pos": 671 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 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"count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S9R4-1", "uniprot_ac": "F1S9R4", "uniprot_id": "F1S9R4_PIG", "mass": { "chemical_mass": 102042.0, "monoisotopic_mass": 102042.0 }, "refseq": { "ac": "XP_005653472", "name": "ZZ-type zinc finger-containing protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653472" }, "gene_names": [ { "name": "ZZZ3", "type": "recommended", "evidence": [ { "id": "F1S9R4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9R4" } ] }, { "name": "ZZZ3", "type": "synonym", "evidence": [ { "id": "XP_005653472", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653472" } ] } ], "protein_names": [ { "name": "ZZ-type zinc finger-containing protein 3", "type": "recommended", "evidence": 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Component of the ATAC complex, a complex with histone acetyltransferase activity on histones H3 and H4.", "evidence": [ { "database": "UniProtKB", "id": "F1S9R4", "url": "https://www.uniprot.org/uniprotkb/F1S9R4#function" }, { "database": "UniProtKB", "id": "ARBA00053098", "url": "https://www.uniprot.org/uniprotkb/ARBA00053098#function" }, { "database": "UniProtKB", "id": "A0A286ZVT1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVT1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9R4", "url": "https://www.uniprot.org/uniprotkb/F1S9R4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZZZ3", "url": "https://www.uniprot.org/uniprotkb/F1S9R4", "locus": { "chromosome": "6", "start_pos": 135741487, "end_pos": 135606192, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003772", "url": "https://www.ensembl.org/id/ENSSSCG00000003772" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003772", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003772", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00167", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00167", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd02341", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02341", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100511643", "url": "https://www.ncbi.nlm.nih.gov/gene/100511643", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000433", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000433", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017930", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017930", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037830", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037830", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041981", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041981", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043145", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043145", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511643", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511643", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PCTDSQV", "url": "https://omabrowser.org/oma/group/PCTDSQV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S9R4", "url": "https://www.orthodb.org/?gene=F1S9R4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22705", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22705", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22705:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22705:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00249", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00249", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00569", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00569", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005653472", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653472", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZVT1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZVT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVT1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9R4", "url": "https://www.uniprot.org/uniprotkb/F1S9R4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9R4-1", "url": "https://www.uniprot.org/uniprotkb/F1S9R4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPEEISSHSQVRSRSPKKRPEPVQVQKGNNNGRTTDVKQQSTRESWVSPRKRGLPSSEKDIIERQAVENCERRQTEPVSPVLKRIKRCLRSEAPNSSEEDSPIKSDKESVEQRSTVVDNDADFQGTKRACRCLILDDCEKREIKKVNVSEEGPLNSAVVEEITGYLAVNGVDDSDSAVINCDDCQPDGNTKQNSTGSYVLQEKSVAENGDSDTHTSMFLDGRKEDSYIDHNVPCTNSEVQVKLEDHKIVTACLPVEHVNQLTTEPATGPYSEIHSSLRDSEEEVDVVGDSSASKEQCNENTSNALDTSLESMPVSREPESSSVLDCVSAQMMSLSEPQEHRYTLRTSPRRAAPTRGSPTKNSSPCRENGPFEENNLNPNETNASVSDNISESLTNPDEISQNEKGICCGSENYGSEGLSKSSSEARLNIGHLPPAKESANPHATEEEDDDPDVYYFESDHVALKHNKDYQRLLQTIAVLEAQRSQAVQDLESLGRHQREALKNPIGFVEKLQKKADIGLPYPQRVVQLPEIVWDQYTNSLGNFEREFKNRKRHTRRVKLVFDKVGLPARPKSPLDSRKDGESLSYSMLPLSDGPEGSNSRPQMIRGRLCDDTKPETFNQLWTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPGRTPNLYIYSKKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRSCFHSHMSTAIEETSDEESIPIMYRNLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPVYRSETFLDRDYCVSQGTSYNYLDPNYFPANR", "length": 903, "header": "tr|F1S9R4-1|F1S9R4_PIG Isoform 1 of ZZ-type zinc finger-containing protein 3 OS=Sus scrofa OX=9823 GN=ZZZ3 PE=4 SV=2 CANONICAL=F1S9R4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZVT1-1", "url": "https://www.uniprot.org/uniprotkb/F1S9R4/entry#A0A286ZVT1-1", "sequence": { "sequence": "MIDLWLYSYQRLLQTIAVLEAQRSQAVQDLESLGRHQREALKNPIGFVEKLQKKADIGLPYPQRVVQLPEIVWDQYTNSLGNFEREFKNRKRHTRRVKLVFDKVGLPARPKSPLDSRKDGESLSYSMLPLSDGPEGSNSRPQMIRGRLCDDTKPETFNQLWTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPGRTPNLYIYSKKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRSCFHSHMSTAIEETSDEESIPIMYRNLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPVYRSETFLDRDYCVSQGTSYNYLDPNYFPANR", "length": 409, "header": "tr|A0A286ZVT1-1|F1S9R4_PIG Computationally mapped isoform of ZZ-type zinc finger-containing protein 3 OS=Sus scrofa OX=9823 GN=ZZZ3 PE=4 SV=1 CANONICAL=F1S9R4-1" }, "locus": { "chromosome": "6", "start_pos": 135740345, "end_pos": 135653681, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061129.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061129.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035752.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035752.2" } ] } }, { "isoform_ac": "F1S9R4-1", "url": "https://www.uniprot.org/uniprotkb/F1S9R4/entry#F1S9R4-1", "sequence": { "sequence": "MAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPEEISSHSQVRSRSPKKRPEPVQVQKGNNNGRTTDVKQQSTRESWVSPRKRGLPSSEKDIIERQAVENCERRQTEPVSPVLKRIKRCLRSEAPNSSEEDSPIKSDKESVEQRSTVVDNDADFQGTKRACRCLILDDCEKREIKKVNVSEEGPLNSAVVEEITGYLAVNGVDDSDSAVINCDDCQPDGNTKQNSTGSYVLQEKSVAENGDSDTHTSMFLDGRKEDSYIDHNVPCTNSEVQVKLEDHKIVTACLPVEHVNQLTTEPATGPYSEIHSSLRDSEEEVDVVGDSSASKEQCNENTSNALDTSLESMPVSREPESSSVLDCVSAQMMSLSEPQEHRYTLRTSPRRAAPTRGSPTKNSSPCRENGPFEENNLNPNETNASVSDNISESLTNPDEISQNEKGICCGSENYGSEGLSKSSSEARLNIGHLPPAKESANPHATEEEDDDPDVYYFESDHVALKHNKDYQRLLQTIAVLEAQRSQAVQDLESLGRHQREALKNPIGFVEKLQKKADIGLPYPQRVVQLPEIVWDQYTNSLGNFEREFKNRKRHTRRVKLVFDKVGLPARPKSPLDSRKDGESLSYSMLPLSDGPEGSNSRPQMIRGRLCDDTKPETFNQLWTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPGRTPNLYIYSKKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRSCFHSHMSTAIEETSDEESIPIMYRNLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPVYRSETFLDRDYCVSQGTSYNYLDPNYFPANR", "length": 903, "header": "tr|F1S9R4-1|F1S9R4_PIG Isoform 1 of ZZ-type zinc finger-containing protein 3 OS=Sus scrofa OX=9823 GN=ZZZ3 PE=4 SV=2 CANONICAL=F1S9R4-1" }, "locus": { "chromosome": "6", "start_pos": 135740345, "end_pos": 135659123, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041460.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041460.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046420.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046420.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZVT1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVT1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511643", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511643", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MIG4-1", "protein_name": "ZZ-type zinc finger-containing protein 3", "gene_name": "Zzz3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVGTCHSMAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPEEISSHSQVRSRSPKKRPEPVPIQKGSNNGRASEIKQQSAREAWVSPRKRRLSSSEKEDLERQGLESCERKQAEPAPPVLKNIKRCLRAEATNSSEEDSPVKPDKGSVEQRTVVDHDAEFQGTKRACRCLVLDDCEKREIKKMTVSEEGPLNTAIVEEITGYLTVNGVEDSDSALVNCEDCQPDGSTKHNSTGSYVLQEKSVAGNGDSETQTPMFFGSRKEDSCVDHLVPCTKSEVQVKLEDHKLATACLPVERRKPPTAEPASGPVSEIQSSLRDSEEEVDVVGDSSVSREQCDESGSGPLDSGTGSMPVSAEPEPASLLDCASAQMTSLAEPQEHRYTLRTSPRRAAPSRGSPTKTASPYRENGQFEESNLSPNETNTTASDNVSESPRNPVENAKVLCCDSQSYGSEGLSEPPSEARVNMGHVPSAKESASQPPAEEEDDDPDVYYFESDHVALKHNKDYQRLLQTIAVLEAQRCQAVQDLESLGKHQREALKNPIGFVEKLQKKADIGLPYPQRVVQLPEIVWDQYTNSLGNFEREFKNRKRHSRRVKLVFDKVGLPARPKSPLDLKKDGEPLSYSVLPLSDGPEGSHSRPQMIRGRLCDDTKPETFNQLWTVEEQKKLEELLLKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPGRTPNLYMYSKKSSASRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRSCFHGHTSPAVEEASDEESIPVMYRSLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGVEPIQGVRWHCQDCPPEMSLDFCDSCSDCPHETDIHKEDHQLEPVYKSETFLDRDYCVSQGTSYSYLDPNYFPANR", "length": 906 }, "evidence": [ { "id": "F1S9R4", "url": "https://omabrowser.org/oma/group/F1S9R4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A5PMR0-1", "protein_name": "ZZ-type zinc finger-containing protein 3", "gene_name": "zzz3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAASRSSRVTRSSVGINGLDENFCGRTLRNRSIAQPEESSPPPVPRARSPKKKQDCQQHQQTGAQVGKVTESKAEGEPVPACGKRGLPSSEKEDSDKFDNCERQRSGCGPEASPALKRAKRCPRSGESQGAEEEPSLKPESPDPAVLKENDDGAKSNNTSASDKEADQKKDGPTEEIAPQPEVSENVKATNGLAELYREDSEVAALPVEPCASPATLNSSPSLLNGSQAAPSSPDPIVPCRSPHPKQTNEPDSPKIDCERNCTPEEAAEAVLSQEPEMEVEVDVVGEAGQAQDEFVREESTNGDFQAEPQDPSDNCSNISGETLLAASQLPAEPPSFTEPQEHRYTLRTSPRRAAFGSGLKASSPKPTSPHIDNGSLKEETTMVPFFSEDTSHKDPSHDALGLSCEADSELFEEEVVSGEVGVSDSRESRSTKELLAAQAEEDEEEEEDPDVYYFESDHLALKHNKDYQRLLQTISVLEAQRTQAILDLETLARHQKEALSDPIAFVDQLQKQVDMGLPRPQRVVQLPEIAWDQYTSGRGDFEREFCDKKRKTRQLQLIFDKVGLPARPKSPVDSKKEGESSSIYSSSLPSSDGPEHSMSSSRAQMIRGRLCNQSKPDTFNQLWTIEEQKKLEQLLLKFPPEEVESKRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPGRTPNVCMYSKKASSKRQHHLNKHLYRPSTFLTSYEPPVYMDDEDERSHFFNSLQDNSADDSDEDGVPVELRHLPEYKELLELKKLKKQKLHELQAESALTQHVGYKCDICGMEPIQGVRWHCQDCPQDNAVDFCSTCSDCLFRTDTHKPTHRLEPVCQAETFLDKDYCLPQSTGYNYLDPNYFPANR", "length": 871 }, "evidence": [ { "id": "F1S9R4", "url": "https://omabrowser.org/oma/group/F1S9R4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1NID3-1", "protein_name": "ZZ-type zinc finger-containing protein 3", "gene_name": "ZZZ3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAASRSTRVTRSTVGLNGLDENFCGRTLRNRSIAHPEEVSPHPQVRSRSPKKRPDSVQTQKGSNGGRTTDLKQQSTRESWVSPRKRGLSTSEKDNVDKQTVENCEKRQGEPVSPVLKRIKRCLRSEAPNSSEEDLSTKTEKESLERKSLVSDNDAVSPGTKRACRCLILDDCDKREVKKVNICAEGFNNSAIVEEITGYQTVNGVGERDSNSLNCDDCQFDGNSKQNSAGSYIPKDKTVAENGNSFAHSSLLLNSSKEDSVVDHYVPCTNSQEQVKLEDHKIISDCLPEEHANQADEPATGSFSEIQSSLLRDSEEEVDVVGDSSASKEQCAENTNNNPNTHRDSTSISGEPEPHSSVLDCVSAQMTSISELQEHRYTLRTSPRRAAPARSSPTKNNSPCRENGQVEENNLSPTEKNVPVGINNINGSPKNSEEIKQNEKERNCNTDNGSDGLRKPLSEARLVAGYVPSAKESANNHTAEDEEEEPDVYYFESDHVALKHNKDYQRLLQTIAVLEAQRTQAVQDLESLGRHQREALKDPIGFVERLQKKVDMGLPYPQRVVQLPEIAWDQYTSSLGNFEREFKNRKRNSRRAKLIFDKVGIPARPKSPLDPKKDGESISYSVLPLSDGPEGSTSSRPQMIRGRLCDETKPETFNQLWTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPGRTPNLYLYSKKSSSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRSSFHSHMDIAAEEEVSDEESIPITYRELPEYKELLEFKKLKRQKLQQMHAESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPQEMSLDFCDSCSDCLHETEIHKEDHQLEPIYRAETFLDRDYCMSQGTSYNYLDPNYFPANR", "length": 905 }, "evidence": [ { "id": "F1S9R4", "url": "https://omabrowser.org/oma/group/F1S9R4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "M0R9X4-1", "protein_name": "ZZ-type zinc finger-containing protein 3", "gene_name": "Zzz3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVGTCHSMAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPEEISSHSQVRSRSPKKRPEPVPILKGNNNGRTSDVKQQSAREWVSPRKRRLSSSEKDDLERQALESCERRQAEPALPVLKNIKRCLRAEATNSSEEDSPVKPDKEPVEIRRTVVDHDAEFQGAKRACRCLILDDCEKREVKKVNVSEEGPLNAAVLEEITGYLTVNGVDDSDSAVINCDDCQPDRNTKQNSPGSCVLQEESVAGDGDSETQTSVFCGSGKEDSCIDHFVPCTKSDVQVKLEDHKLVTACLPVERRSQLTAESASGPVSEVQSSLRDSEEEVDVVGDSSASKEQCNENSSDPLDTGSECLPASGEPELSSMLDCVSAQMTSLSEPQEHRYTLRTSPRRAAQTRGSPTKNTSPYRENGQFEENNLSPNETNTTASDNVSESPTNPVEISQDEKVLCCDSENYGSEGLSKPSSEARMNIGHLPSAKESASQHTAEEEDDDPDVYYFESDHVALKHNKDYQRLLQTIAVLEAQRSQAVQDLESLGKHQREALKNPIGFVEKLQKKADIGLPYPQRVVQLPEIVWDQYTSSLGNFEREFKHRKRHTRRVKLVFDKVGLPARPKSPLDPKKDGDSLSYSMLPLSDGPEGSHHRPQMIRGRLCDDSKPETFNQLWTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPGRTPNLYIYSRKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDERSCPHSHMSTAVEEASDEESIPVIYRSLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGVEPIQGVRWHCQDCPPEMSLDFCDSCSDCPHETDIHKEDHQLEPVYKSETFLDRDYCVSQGTSYSYLDPNYFPANR", "length": 909 }, "evidence": [ { "id": "F1S9R4", "url": "https://omabrowser.org/oma/group/F1S9R4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6KAQ7-1", "protein_name": "ZZ-type zinc finger-containing protein 3", "gene_name": "Zzz3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVGTCHSMAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPEEISSHSQVRSRSPKKRAEPVPTQKGTNNGRTSDVRQQSARDSWVSPRKRRLSSSEKDDLERQALESCERRQAEPAPPVFKNIKRCLRAEATNSSEEDSPVKPDKEPGEHRRIVVDHDADFQGAKRACRCLILDDCEKREVKKVNVSEEGPLNAAVVEEITGYLTVNGVDDSDSAVINCDDCQPDGNTKQNNPGSCVLQEESVAGDGDSETQTSVFCGSRKEDSCIDHFVPCTKSDVQVKLEDHKLVTACLPVERRNQLTAESASGPVSEIQSSLRDSEEEVDVVGDSSASKEQCNENSSNPLDTGSERMPVSGEPELSSILDCVSAQMTSLSEPQEHRYTLRTSPRRAALARSSPTKTTSPYRENGQLEETNLSPQETNTTVSDHVSESPTDPAEVPQDGKVLCCDSENYGSEGLSKPPSEARVNIGHLPSAKESASQHTAEEEDDDPDVYYFESDHVALKHNKDYQRLLQTIAVLEAQRSQAVQDLESLGKHQREALKNPIGFVEKLQKKADIGLPYPQRVVQLPEIMWDQYTNSLGNFEREFKHRKRHTRRVKLVFDKVGLPARPKSPLDPKKDGESLSYSMLPLSDGPEGSHNRPQMIRGRLCDDSKPETFNQLWTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPGRTPNLYIYSRKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRSCLHSHMSTAAEEASDEESIPIIYRSLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGVEPIQGVRWHCQDCPPEMSLDFCDSCSDCPHETDIHKEDHQLEPVYKSETFLDRDYCVSQGTSYSYLDPNYFPANR", "length": 910 }, "evidence": [ { "id": "F1S9R4", "url": "https://omabrowser.org/oma/group/F1S9R4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IYH5-1", "protein_name": "ZZ-type zinc finger-containing protein 3", "gene_name": "ZZZ3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPEEISSNSQVRSRSPKKRPEPVPIQKGNNNGRTTDLKQQSTRESWVSPRKRGLSSSEKDNIERQAIENCERRQTEPVSPVLKRIKRCLRSEAPNSSEEDSPIKSDKESVEQRSTVVDNDADFQGTKRACRCLILDDCEKREIKKVNVSEEGPLNSAVVEEITGYLAVNGVDDSDSAVINCDDCQPDGNTKQNSIGSYVLQEKSVAENGDTDTQTSMFLDSRKEDSYIDHKVPCTDSQVQVKLEDHKIVTACLPVEHVNQLTTEPATGPFSETQSSLRDSEEEVDVVGDSSASKEQCKENTNNELDTSLESMPASGEPEPSPVLDCVSAQMMSLSEPQEHRYTLRTSPRRAAPTRGSPTKNSSPYRENGQFEENNLSPNETNATVSDNVSQSPTNPGEISQNEKGICCDSQNNGSEGVSKPPSEARLNIGHLPSAKESASQHITEEEDDDPDVYYFESDHVALKHNKDYQRLLQTIAVLEAQRSQAVQDLESLGRHQREALKNPIGFVEKLQKKADIGLPYPQRVVQLPEIVWDQYTHSLGNFEREFKNRKRHTRRVKLVFDKVGLPARPKSPLDPKKDGESLSYSMLPLSDGPEGSSSRPQMIRGRLCDDTKPETFNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPGRTPNLYIYSKKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRSCFHSHMNTAVEDASDDESIPIMYRNLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSETFLDRDYCVSQGTSYNYLDPNYFPANR", "length": 903 }, "evidence": [ { "id": "F1S9R4", "url": "https://omabrowser.org/oma/group/F1S9R4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1S9R4", "url": "https://www.uniprot.org/uniprotkb/F1S9R4" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1S9R4", "url": "https://www.uniprot.org/uniprotkb/F1S9R4" } ], "pmid": "" }, { "name": "histone binding", "id": "GO:0042393", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042393", "evidence": [ { "database": "UniProtKB", "id": "F1S9R4", "url": "https://www.uniprot.org/uniprotkb/F1S9R4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1S9R4", "url": "https://www.uniprot.org/uniprotkb/F1S9R4" } ], "pmid": "" }, { "name": "regulation of cell cycle", "id": "GO:0051726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051726", "evidence": [ { "database": "UniProtKB", "id": "F1S9R4", "url": "https://www.uniprot.org/uniprotkb/F1S9R4" } ], "pmid": "" }, { "name": "regulation of cell division", "id": "GO:0051302", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051302", "evidence": [ { "database": "UniProtKB", "id": "F1S9R4", "url": "https://www.uniprot.org/uniprotkb/F1S9R4" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1S9R4", "url": "https://www.uniprot.org/uniprotkb/F1S9R4" } ], "pmid": "" }, { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "F1S9R4", "url": "https://www.uniprot.org/uniprotkb/F1S9R4" } ], "pmid": "" }, { "name": "regulation of embryonic development", "id": "GO:0045995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045995", "evidence": [ { "database": "UniProtKB", "id": "F1S9R4", "url": "https://www.uniprot.org/uniprotkb/F1S9R4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "ATAC complex", "id": "GO:0140672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140672", "evidence": [ { "database": "UniProtKB", "id": "F1S9R4", "url": "https://www.uniprot.org/uniprotkb/F1S9R4" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S9R4", "url": "https://www.uniprot.org/uniprotkb/F1S9R4" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1S9R4", "url": "https://www.uniprot.org/uniprotkb/F1S9R4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 181, "end_pos": 183, "annotation": "n_glycosylation_sequon" }, { "start_pos": 227, "end_pos": 229, "annotation": "n_glycosylation_sequon" }, { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" }, { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" }, { "start_pos": 395, "end_pos": 397, "annotation": "n_glycosylation_sequon" }, { "start_pos": 413, "end_pos": 415, "annotation": "n_glycosylation_sequon" }, { "start_pos": 416, "end_pos": 418, "annotation": "n_glycosylation_sequon" }, { "start_pos": 422, "end_pos": 424, "annotation": "n_glycosylation_sequon" }, { "start_pos": 689, "end_pos": 691, "annotation": 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"glycosite_overlap": "" }, { "evidence": [ { "id": "F1S9R4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9R4" }, { "id": "PS50135", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50135" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ZZ-type", "eco_id": "ECO_0000259", "start_pos": 818, "end_pos": 877, "start_aa": "His", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 }, { "start_pos": 181, "end_pos": 183 }, { "start_pos": 227, "end_pos": 229 }, { "start_pos": 30, "end_pos": 32 }, { "start_pos": 334, "end_pos": 336 }, { "start_pos": 395, "end_pos": 397 }, { "start_pos": 413, "end_pos": 415 }, { "start_pos": 416, "end_pos": 418 }, { "start_pos": 422, "end_pos": 424 }, { "start_pos": 689, "end_pos": 691 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, 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"F1SBI1-1", "uniprot_ac": "F1SBI1", "uniprot_id": "F1SBI1_PIG", "mass": { "chemical_mass": 46848.0, "monoisotopic_mass": 46848.0 }, "refseq": { "ac": "XP_020933988", "name": "sorting nexin-5 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933988" }, "gene_names": [ { "name": "SNX5", "type": "recommended", "evidence": [ { "id": "F1SBI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBI1" } ] }, { "name": "SNX5", "type": "synonym", "evidence": [ { "id": "XP_020933988", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933988" } ] } ], "protein_names": [ { "name": "Sorting nexin", "type": "recommended", "evidence": [ { "id": "F1SBI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBI1/entry#names_and_taxonomy" } ] }, { "name": "sorting nexin-5 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020933988", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933988" } ] } ], "function": [ { "annotation": "Involved in several stages of intracellular trafficking.", "evidence": [ { "database": "UniProtKB", "id": "F1SBI1", "url": "https://www.uniprot.org/uniprotkb/F1SBI1#function" }, { "database": "UniProtKB", "id": "PIRNR036924", "url": "https://www.uniprot.org/uniprotkb/PIRNR036924#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBI1", "url": "https://www.uniprot.org/uniprotkb/F1SBI1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SNX5", "url": "https://www.uniprot.org/uniprotkb/F1SBI1", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000007088", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007088", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07291", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07291", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd07663", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07663", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155390", "url": "https://www.ncbi.nlm.nih.gov/gene/100155390", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001683", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001683", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014637", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014637", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015404", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015404", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028654", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028654", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155390", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155390", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ECCQRFE", "url": "https://omabrowser.org/oma/group/ECCQRFE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SBI1", "url": "https://www.orthodb.org/?gene=F1SBI1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45850", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45850", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45850:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45850:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00787", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00787", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09325", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09325", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-432722", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432722", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020933988", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933988", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A6M6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A6M6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6M6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDS6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDS6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBI1", "url": "https://www.uniprot.org/uniprotkb/F1SBI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBI1-1", "url": "https://www.uniprot.org/uniprotkb/F1SBI1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVPELLQQQEEDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVVKSADEVLFSGVKEVDDFFEQEKNFLINYYNRIKDSCAKADRMTRSHKNVADDYIHTAACLHSLASEEPTVIKKYLLKVAELFEKLRKVESRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSRDIKLAEAHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNNVSLLQSCIDLFKNN", "length": 404, "header": "tr|F1SBI1-1|F1SBI1_PIG Isoform 1 of Sorting nexin OS=Sus scrofa OX=9823 GN=SNX5 PE=1 SV=3 CANONICAL=F1SBI1-1" }, "isoforms": [ { "isoform_ac": "A0A287A6M6-1", "url": "https://www.uniprot.org/uniprotkb/F1SBI1/entry#A0A287A6M6-1", "sequence": { "sequence": "MAAVPELLQQQEEDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVVKSADEVLFSGVKEVDDFFEQEKNFLINYYNRIKDSCAKADRMTRSHKNVADDYIHTAACLHSLASEEPTVIKKYLLKVAELFEKLRKVESRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSRDIKLAEAHQQECCQKFEQLSESAKEEQCLPPAELH", "length": 369, "header": "tr|A0A287A6M6-1|F1SBI1_PIG Computationally mapped isoform of Sorting nexin OS=Sus scrofa OX=9823 GN=SNX5 PE=1 SV=1 CANONICAL=F1SBI1-1" }, "locus": { "chromosome": "17", "start_pos": 26381148, "end_pos": 26354206, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065326.2", "url": "https://www.ensembl.org/id/ENSSSCT00000065326.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039462.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039462.1" } ] } }, { "isoform_ac": "A0A5G2RDS6-1", "url": "https://www.uniprot.org/uniprotkb/F1SBI1/entry#A0A5G2RDS6-1", "sequence": { "sequence": "IDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVVKSADEVLFSGVKEVDDFFEQEKNFLINYYNRIKDSCAKADRMTRSHKNVADDYIHTAACLHSLASEEPTVIKKYLLKVAELFEKLRKVESRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSRDIKLAEAHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARDRTQNLMLPGWICFCYAMMGTLEKNFF", "length": 383, "header": "tr|A0A5G2RDS6-1|F1SBI1_PIG Computationally mapped isoform of Sorting nexin OS=Sus scrofa OX=9823 GN=SNX5 PE=1 SV=2 CANONICAL=F1SBI1-1" }, "locus": { "chromosome": "17", "start_pos": 26369887, "end_pos": 26355058, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066853.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066853.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068931.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068931.2" } ] } }, { "isoform_ac": "F1SBI1-1", "url": "https://www.uniprot.org/uniprotkb/F1SBI1/entry#F1SBI1-1", "sequence": { "sequence": "MAAVPELLQQQEEDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVVKSADEVLFSGVKEVDDFFEQEKNFLINYYNRIKDSCAKADRMTRSHKNVADDYIHTAACLHSLASEEPTVIKKYLLKVAELFEKLRKVESRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSRDIKLAEAHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNNVSLLQSCIDLFKNN", "length": 404, "header": "tr|F1SBI1-1|F1SBI1_PIG Isoform 1 of Sorting nexin OS=Sus scrofa OX=9823 GN=SNX5 PE=1 SV=3 CANONICAL=F1SBI1-1" }, "locus": { "chromosome": "17", "start_pos": 26381148, "end_pos": 26354187, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007760.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007760.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007551.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007551.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RDS6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDS6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155390", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155390", "resource": "KEGG Pathway" }, { "id": "R-SSC-432722", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432722", "resource": "Reactome", "description": "Golgi Associated Vesicle Biogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "B1H267-1", "protein_name": "Sorting nexin-5", "gene_name": "Snx5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAVPELLEQQEEDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVVKSADEVLFSGVKEVDDFFEQEKNFLINYYNRIKDSCAKADKMTRSHKNVADDYIHTAACLHSLALEEPTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSKDVKLAETHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNNVSLLQSCIDLFKNN", "length": 404 }, "evidence": [ { "id": "F1SBI1", "url": "https://omabrowser.org/oma/group/F1SBI1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1P337-1", "protein_name": "Sorting nexin", "gene_name": "SNX5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALLRDGAQSKLRSVSVDLNVDPSLQIDIPDALSEKDRVKFTVHTKTTLPAFQSPEFSVTRQHEDFVWLHDTLSETEEYAGLIIPPAPSKPDFDGPREKMQKLGEGEVSMTKEEFAKMKQELEAEYLAVFKKTVSSHEIFLQRISSHPVLSKDHNFCVFLEYDQDLSVRRKNTKEMLGFLLKSVVKSADEILLSGVKEVDDFFEQEKTFLVNYHNRIKDACAKADKMTRSRKNIADDYIYTSACLNSLASEEPTVIKKYLLKVAELFEKLRKVESRVSSDEDLKLSELLRYYMLNIDAAKDLLYRRARALVGYENSNKALDKARLKSKDVNLAEAHQQDCYQKFEKISESAKQELISFKQKRITAFRKNLIEMAELEIKHAKNNVSLLQSCIDLFKN", "length": 397 }, "evidence": [ { "id": "F1SBI1", "url": "https://omabrowser.org/oma/group/F1SBI1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q3ZBM5-1", "protein_name": "Sorting nexin-5", "gene_name": "SNX5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAVPEVLQQQEEDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVVKSADEVLFSGVKEVDDFFEQEKTFLINYYNRIKDSCAKADRMTRSHKNVADDYIHTAACLHSLALEEPTVIKKYLLKVAELFEKLRKVESRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSRDVKLAEAHQQECCQKFEQLSESAKDELINFKRKRVAAFRKNLIEMSELEIKHARNNVSLLQSCIDLFKNN", "length": 404 }, "evidence": [ { "id": "F1SBI1", "url": "https://omabrowser.org/oma/group/F1SBI1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9D8U8-1", "protein_name": "Sorting nexin-5", "gene_name": "Snx5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAVPELLEQQEEDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLSTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSTHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVVKSADEVLFSGVKEVDDFFEQEKNFLINYYNRIKDSCAKADKMTRSHKNVADDYIHTAACLHSLALEEPTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSKDVKLAETHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNNVSLLQSCIDLFKNN", "length": 404 }, "evidence": [ { "id": "F1SBI1", "url": "https://omabrowser.org/oma/group/F1SBI1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y5X3-1", "protein_name": "Sorting nexin-5", "gene_name": "SNX5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAVPELLQQQEEDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHTAACLHSLALEEPTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSKDVKLAEAHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNNVSLLQSCIDLFKNN", "length": 404 }, "evidence": [ { "id": "F1SBI1", "url": "https://omabrowser.org/oma/group/F1SBI1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "F1SBI1", "url": "https://www.uniprot.org/uniprotkb/F1SBI1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SBI1", "url": "https://www.uniprot.org/uniprotkb/F1SBI1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1SBI1", "url": "https://www.uniprot.org/uniprotkb/F1SBI1" } ], "pmid": "" }, { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "F1SBI1", "url": "https://www.uniprot.org/uniprotkb/F1SBI1" } ], "pmid": "" }, { "name": "pinocytosis", "id": "GO:0006907", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006907", "evidence": [ { "database": "UniProtKB", "id": "F1SBI1", "url": "https://www.uniprot.org/uniprotkb/F1SBI1" } ], "pmid": "" }, { "name": "retrograde transport, endosome to Golgi", "id": "GO:0042147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042147", "evidence": [ { "database": "UniProtKB", "id": "F1SBI1", "url": "https://www.uniprot.org/uniprotkb/F1SBI1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phosphatidylinositol binding", "id": "GO:0035091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035091", "evidence": [ { "database": "UniProtKB", "id": "F1SBI1", "url": "https://www.uniprot.org/uniprotkb/F1SBI1" } ], "pmid": "" }, { "name": "dynactin binding", "id": "GO:0034452", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034452", "evidence": [ { "database": "UniProtKB", "id": "F1SBI1", "url": "https://www.uniprot.org/uniprotkb/F1SBI1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 390, "end_pos": 392, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBI1" }, { "id": "PS50195", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50195" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PX", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 172, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 390, "end_pos": 392 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SC06-1", "uniprot_ac": "F1SC06", "uniprot_id": "F1SC06_PIG", "mass": { "chemical_mass": 51895.0, "monoisotopic_mass": 51895.0 }, "refseq": { "ac": "XP_003482729", "name": "cell division cycle-associated 7-like protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482729" }, "gene_names": [ { "name": "CDCA7L", "type": "recommended", "evidence": [ { "id": "F1SC06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC06" } ] }, { "name": "CDCA7L", "type": "synonym", "evidence": [ { "id": "XP_003482729", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482729" } ] } ], "protein_names": [ { "name": "Cell division cycle associated 7 like", "type": "synonym", "evidence": [ { "id": "F1SC06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC06/entry#names_and_taxonomy" } ] }, { "name": "cell division cycle-associated 7-like protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003482729", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482729" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SC06", "url": "https://www.uniprot.org/uniprotkb/F1SC06" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CDCA7L", "url": "https://www.uniprot.org/uniprotkb/F1SC06", "locus": { "chromosome": "9", "start_pos": 90766795, "end_pos": 90806865, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015380", "url": "https://www.ensembl.org/id/ENSSSCG00000015380" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015380", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015380", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518624", "url": "https://www.ncbi.nlm.nih.gov/gene/100518624", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018866", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018866", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040221", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040221", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518624", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518624", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DPAWICP", "url": "https://omabrowser.org/oma/group/DPAWICP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SC06", "url": "https://www.orthodb.org/?gene=F1SC06", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31169", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31169", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31169:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31169:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10497", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10497", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003482729", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482729", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A8D2", "url": "https://www.uniprot.org/uniprotkb/A0A287A8D2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8D2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8D2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BA04", "url": "https://www.uniprot.org/uniprotkb/A0A287BA04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BA04-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BA04-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC06", "url": "https://www.uniprot.org/uniprotkb/F1SC06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC06-1", "url": "https://www.uniprot.org/uniprotkb/F1SC06-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELASRSQIPKEVADIFNAPSDDEEFIGFRDDVPMETLSSEESCDSFDSLESGKQQEVRFHSKYFTEELRRIFIEDTDSETEDFEGFTQSDLNVNSSSEVMLVESDLSDDGEASFVSEEEEDDEEAKATSRRSRPRRSSIGLRVALQFPTRKLAKKADKNTSSEPLFSGSRLQDNKRAILGRKTSCKQRKEREDSASESEDDSRDEGQDCSDALLKRTMNIKENKAMLAQLLAELNSMPDFFPVRTPTSASKKKTSRRAFSEGQITRRTNPARSARPPDKFALENFTVSATKFAEEFYSFRRRKTMSGGKCQGYRRRHRVSSFRPVEDITEEDLENVAITVRDKIYDKVLGNTCHQCRQKTIDTKTVCRNQSCGGVRGQFCGPCLRNRYGEDVRSALLDPDWICPPCRGICNCSYCRRRDGRCATGILIHLAKFYGYNNVKEYLESLQKQLVKDN", "length": 455, "header": "tr|F1SC06-1|F1SC06_PIG Isoform 1 of Cell division cycle associated 7 like OS=Sus scrofa OX=9823 GN=CDCA7L PE=4 SV=3 CANONICAL=F1SC06-1" }, "isoforms": [ { "isoform_ac": "A0A287A8D2-1", "url": "https://www.uniprot.org/uniprotkb/F1SC06/entry#A0A287A8D2-1", "sequence": { "sequence": "MELASRSQIPKEVADIFNAPSDDEEFIGFRDDVPMETLSSEESCDSFDSLESGKQLVESDLSDDGEASFVSEEEEDDEEAKATSRRSRPRRSSIGLRVALQFPTRKLAKKADKNTSSEPLFSGSRLQDNKRAILGRKTSCKQRKEREDSASESEDDSRDEGQDCSDALLKRTMNIKENKAMLAQLLAELNSMPDFFPVRTPTSASKKKTSRRAFSEGQITRRTNPARSARPPDKFALENFTVSATKFAEEFYSFRRRKTMSGGKCQGYRRRHRVSSFRPVEDITEEDLENVAITVRDKIYDKVLGNTCHQCRQKTIDTKTVCRNQSCGGVRGQFCGPCLRNRYGEDVRSALLDPDWICPPCRGICNCSYCRRRDGRCATGILIHLAKFYGYNNVKEYLESLQKQLVKDN", "length": 409, "header": "tr|A0A287A8D2-1|F1SC06_PIG Computationally mapped isoform of Cell division cycle associated 7 like OS=Sus scrofa OX=9823 GN=CDCA7L PE=4 SV=1 CANONICAL=F1SC06-1" }, "locus": { "chromosome": "9", "start_pos": 90806771, "end_pos": 90768461, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053116.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053116.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040141.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040141.1" } ] } }, { "isoform_ac": "A0A287BA04-1", "url": "https://www.uniprot.org/uniprotkb/F1SC06/entry#A0A287BA04-1", "sequence": { "sequence": "METLSSEESCDSFDSLESGKQQEVRFHSKYFTEELRRIFIEDTDSETEDFEGFTQSDLNVNSSSEVMLVESDLSDDGEASFVSEEEEDDEEAKATSRRSRPRRSSIGLRVALQFPTRKLAKKADKNTSSEPLFSGSRLQDNKRAILGRKTSCKQRKEREDSASESEDDSRDEGQDCSDALLKRTMNIKENKAMLAQLLAELNSMPDFFPVRTPTSASKKKTSRRAFSEGQITRRTNPARSARPPDKFALENFTVSATKFAEEFYSFRRRKTMSGGKCQGYRRRHRVSSFRPVEDITEEDLENVAITVRDKIYDKVLGNTCHQCRQKTIDTKTVCRNQSCGGVRGQFCGPCLRNRYGEDVRSALLDPDWICPPCRGICNCSYCRRRDGRCATGILIHLAKFYGYNNVKEYLESLQKQLVKDN", "length": 421, "header": "tr|A0A287BA04-1|F1SC06_PIG Computationally mapped isoform of Cell division cycle associated 7 like OS=Sus scrofa OX=9823 GN=CDCA7L PE=4 SV=2 CANONICAL=F1SC06-1" }, "locus": { "chromosome": "9", "start_pos": 90783094, "end_pos": 90768461, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057841.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057841.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053330.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053330.2" } ] } }, { "isoform_ac": "F1SC06-1", "url": "https://www.uniprot.org/uniprotkb/F1SC06/entry#F1SC06-1", "sequence": { "sequence": "MELASRSQIPKEVADIFNAPSDDEEFIGFRDDVPMETLSSEESCDSFDSLESGKQQEVRFHSKYFTEELRRIFIEDTDSETEDFEGFTQSDLNVNSSSEVMLVESDLSDDGEASFVSEEEEDDEEAKATSRRSRPRRSSIGLRVALQFPTRKLAKKADKNTSSEPLFSGSRLQDNKRAILGRKTSCKQRKEREDSASESEDDSRDEGQDCSDALLKRTMNIKENKAMLAQLLAELNSMPDFFPVRTPTSASKKKTSRRAFSEGQITRRTNPARSARPPDKFALENFTVSATKFAEEFYSFRRRKTMSGGKCQGYRRRHRVSSFRPVEDITEEDLENVAITVRDKIYDKVLGNTCHQCRQKTIDTKTVCRNQSCGGVRGQFCGPCLRNRYGEDVRSALLDPDWICPPCRGICNCSYCRRRDGRCATGILIHLAKFYGYNNVKEYLESLQKQLVKDN", "length": 455, "header": "tr|F1SC06-1|F1SC06_PIG Isoform 1 of Cell division cycle associated 7 like OS=Sus scrofa OX=9823 GN=CDCA7L PE=4 SV=3 CANONICAL=F1SC06-1" }, "locus": { "chromosome": "9", "start_pos": 90806771, "end_pos": 90768461, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016755.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016755.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016308.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016308.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A8D2", "url": "https://www.uniprot.org/uniprotkb/A0A287A8D2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518624", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518624", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E7FGN3-1", "protein_name": "Cell division cycle-associated 7-like protein", "gene_name": "cdca7b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MIKTRRALLKTKQQDVTDQSEDSIKAIQSMRSWKPVVVCRDVCLKSKSMSDELAKIFMDSDNEEEFQGFSGDEEDWKKPVSGRSDEDSDDNGFYSDGEEPAPKRKRSSGLCVAFNFPAKRSPAPKKNTTKKSAKVAPPTRNKPIRGNRTQREPEGKKEPVLKESQSKASDNRSSVENLLTDEEMQILSKRAKNIEENKAMLAKLFADLSSLPELPSKTTPTKKRKYSTPKRQLSEVQSERRNPGRKARPPEHFGVEIEEKPAPRRRESGEIDINRLMEVKEGYGDARPKQRKRRSRESIRMPEDITEEELLNVADRAKDKILDKENGSTCHQCRQKTLDTKTECRGLFCGGVKGQFCGPCLRNRYGEDVREALLDPSWECPICRGVCNCSLCRKRDGRCATGALTRLAKFYGHDNVKEYLESLQKDIE", "length": 428 }, "evidence": [ { "id": "F1SC06", "url": "https://omabrowser.org/oma/group/F1SC06/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1MBU7-1", "protein_name": "Cell division cycle associated 7 like", "gene_name": "CDCA7L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALATRSQIPKEVADIFNAPSDDEEFVGFRDDVPMETLSSEESCDSFDSLESGKQQDVRFHSKYFTEELRRIFIEDTDSEMEDFEGFTQTDLNVNSNPELVESDLSDDSKESFVSGEEDDDEEKATARRSRPRRSSIGLRVAFQFPTKKLAKKADKNGSAEPLFPGSRLQDNKKMILGRKTSCRQEKESEDSASESEDDSRDEGQESSDALLKRTMNIKENKAMLAQLLAELNSMPDFFPVRTPNSASKKKTTRRAFSEGQVTRRTNPARSARPPEKFALENFTVSAAKFAEEFYSFRRRKTGKCQGHRRRRCVSSFRPVEDITEEDLENVAITVRDKIYDKVLGNTCHQCRQKTIDTKTVCRNQSCGGVRGQFCGPCLRNRYGEDVRSALLDPDWVCPPCRGICNCSYCRRRDGRCATGILIHLAKFYGYNNVKEYLESLQKQLVEDN", "length": 449 }, "evidence": [ { "id": "F1SC06", "url": "https://omabrowser.org/oma/group/F1SC06/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4G059-1", "protein_name": "Cell division cycle-associated 7-like protein", "gene_name": "Cdca7l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELATRSQIPKEVADIFNAPSDDEEFVGFQDDVPMENLSESCGSLDSLELEKQNACLHSKYFTEELRRIFKEDTDSDNEDFEGFTESELNIGSNPELIESELSDGDKTHPMMSDEEDDDDEEEAAPRRGRQSTRSSFGLRVAFQFPTKKTAKTPDKNSPHLLGGKTDLRREKSCRQPKEKEDSASDAEDESRAESQETSDALLKRAMNIKENKAMLAQLLAELNSVPDFFPVRTPPSASRRRTPRRAFSEGQITRRVNPTRSARPPEKFALENFTFSATKLTEELYSFRRRKTISGGKCQKYRRHRISSFRSVKDITEEELENIAITVRDKVYDKVLGNTCHQCRQKTIDTKTVCRNQGCGGVRGQFCGPCLRNRYGEDVRTALLDPKWTCPPCRGICNCSYCRRRDGRCATGILIHLAKFYGYDNVKEYLESLQKQL", "length": 438 }, "evidence": [ { "id": "F1SC06", "url": "https://omabrowser.org/oma/group/F1SC06/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q922M5-1", "protein_name": "Cell division cycle-associated 7-like protein", "gene_name": "Cdca7l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MELATRSQIPKEVADIFSAPSDDEEFVGFQDDVPMQNLSESCGSLDSRELEKQQNVCFRSKYFTEELRRIFKEDTDSEMEDFEGFTESELNMSSNPELMESELSDSDKAYPVMNDAEEDDEEEAAPRRGRSTRRSSFGLRVAFQFPTKKLARTPDKDSSHLLDSKTDLRRKKSSRQPKGKEDSASDAEDESRAESQENSDALLKRAMNIKENKAMLAQLLAELNSVPDFFPVRTPPSASRRRTPRRAFSEGQITRRMNPTRSARPPEKFALENFTFSATKLTEELYSFRRRKTISGGKCQTYRRHRISSFRSVKDITEEDLENIAITVRDKVYDKVLGNTCHQCRQKTIDTKTVCRNQSCGGVRGQFCGPCLRNRYGEDVRTALLDPKWTCPPCRGICNCSYCRRRDGRCATGILIHLAKFYGYDNVKEYLESLQKQL", "length": 438 }, "evidence": [ { "id": "F1SC06", "url": "https://omabrowser.org/oma/group/F1SC06/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96GN5-1", "protein_name": "Cell division cycle-associated 7-like protein", "gene_name": "CDCA7L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MELATRYQIPKEVADIFNAPSDDEEFVGFRDDVPMETLSSEESCDSFDSLESGKQQDVRFHSKYFTEELRRIFIEDTDSETEDFAGFTQSDLNGKTNPEVMVVESDLSDDGKASLVSEEEEDEEEDKATPRRSRSRRSSIGLRVAFQFPTKKLANKPDKNSSSEQLFSSARLQNEKKTILERKKDCRQVIQREDSTSESEDDSRDESQESSDALLKRTMNIKENKAMLAQLLAELNSMPDFFPVRTPTSASRKKTVRRAFSEGQITRRMNPTRSARPPEKFALENFTVSAAKFAEEFYSFRRRKTIGGKCREYRRRHRISSFRPVEDITEEDLENVAITVRDKIYDKVLGNTCHQCRQKTIDTKTVCRNQGCCGVRGQFCGPCLRNRYGEDVRSALLDPDWVCPPCRGICNCSYCRKRDGRCATGILIHLAKFYGYDNVKEYLESLQKELVEDN", "length": 454 }, "evidence": [ { "id": "F1SC06", "url": "https://omabrowser.org/oma/group/F1SC06/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SC06", "url": "https://www.uniprot.org/uniprotkb/F1SC06" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SC06", "url": "https://www.uniprot.org/uniprotkb/F1SC06" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SC06", "url": "https://www.uniprot.org/uniprotkb/F1SC06" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SC06", "url": "https://www.uniprot.org/uniprotkb/F1SC06" } ], "pmid": "" }, { "name": "fibrillar center", "id": "GO:0001650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001650", "evidence": [ { "database": "UniProtKB", "id": "F1SC06", "url": "https://www.uniprot.org/uniprotkb/F1SC06" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SC06", "url": "https://www.uniprot.org/uniprotkb/F1SC06" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1SC06", "url": "https://www.uniprot.org/uniprotkb/F1SC06" } ], "pmid": "" }, { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "F1SC06", "url": "https://www.uniprot.org/uniprotkb/F1SC06" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 285, "end_pos": 287, "annotation": "n_glycosylation_sequon" }, { "start_pos": 370, "end_pos": 372, "annotation": "n_glycosylation_sequon" }, { "start_pos": 412, "end_pos": 414, "annotation": "n_glycosylation_sequon" }, { "start_pos": 95, "end_pos": 97, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SC06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC06" }, { "id": "PF10497", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10497" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Zinc-finger", "eco_id": "ECO_0000259", "start_pos": 346, "end_pos": 444, "start_aa": "Tyr", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 160, "end_pos": 162 }, { "start_pos": 285, "end_pos": 287 }, { "start_pos": 370, "end_pos": 372 }, { "start_pos": 412, "end_pos": 414 }, { "start_pos": 95, "end_pos": 97 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SEL7-1", "uniprot_ac": "F1SEL7", "uniprot_id": "F1SEL7_PIG", "mass": { "chemical_mass": 140157.0, "monoisotopic_mass": 140157.0 }, "refseq": { "ac": "XP_020928418", "name": "retinol-binding protein 3 precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928418" }, "gene_names": [ { "name": "RBP3", "type": "recommended", "evidence": [ { "id": "F1SEL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEL7" } ] }, { "name": "IRBP", "type": "synonym", "evidence": [ { "id": "XP_020928418", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928418" } ] }, { "name": "RBP3", "type": "synonym", "evidence": [ { "id": "XP_020928418", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928418" } ] } ], "protein_names": [ { "name": "Retinol-binding protein 3", "type": "recommended", "evidence": [ { "id": "F1SEL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEL7/entry#names_and_taxonomy" } ] }, { "name": "Interphotoreceptor retinoid-binding protein", "type": "synonym", "evidence": [ { "id": "XP_020928418", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928418" }, { "id": "F1SEL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEL7/entry#names_and_taxonomy" } ] }, { "name": "Interstitial retinol-binding protein", "type": "synonym", "evidence": [ { "id": "XP_020928418", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928418" }, { "id": "F1SEL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEL7/entry#names_and_taxonomy" } ] }, { "name": "Retinol-binding protein 3", "type": "synonym", "evidence": [ { "id": "XP_020928418", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928418" } ] }, { "name": "excision repair cross-complementing rodent repair deficiency, complementation group 6", "type": "synonym", "evidence": [ { "id": "XP_020928418", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928418" } ] }, { "name": "interphotoreceptor retinoid binding protein", "type": "synonym", "evidence": [ { "id": "XP_020928418", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928418" } ] }, { "name": "retinol-binding protein 3 precursor", "type": "synonym", "evidence": [ { "id": "XP_020928418", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928418" } ] } ], "function": [ { "annotation": "IRBP shuttles 11-cis and all trans retinoids between the retinol isomerase in the pigment epithelium and the visual pigments in the photoreceptor cells of the retina.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A908", "url": "https://www.uniprot.org/uniprotkb/A0A287A908#function" }, { "database": "UniProtKB", "id": "ARBA00053993", "url": "https://www.uniprot.org/uniprotkb/ARBA00053993#function" }, { "database": "UniProtKB", "id": "F1SEL7", "url": "https://www.uniprot.org/uniprotkb/F1SEL7#function" }, { "database": "UniProtKB", "id": "A0A8W4FC75", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC75#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEL7", "url": "https://www.uniprot.org/uniprotkb/F1SEL7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RBP3", "url": "https://www.uniprot.org/uniprotkb/F1SEL7", "locus": { "chromosome": "14", "start_pos": 88490013, "end_pos": 88504510, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010374", "url": "https://www.ensembl.org/id/ENSSSCG00000010374" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010374", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010374", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07563", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07563", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155788", "url": "https://www.ncbi.nlm.nih.gov/gene/100155788", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "9FRX", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9FRX&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR005151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029045", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029045", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155788", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155788", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VHKVWEP", "url": "https://omabrowser.org/oma/group/VHKVWEP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SEL7", "url": "https://www.orthodb.org/?gene=F1SEL7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11261", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11261", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11261:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11261:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00009frx", "url": "https://www.rcsb.org/structure/pdb_00009frx", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9FRX", "url": "https://www.rcsb.org/structure/9FRX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF03572", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03572", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11918", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11918", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2187335", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2187335", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2453902", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2453902", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020928418", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928418", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A908", "url": "https://www.uniprot.org/uniprotkb/A0A287A908", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A908-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A908-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FC75", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FC75-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC75-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEL7", "url": "https://www.uniprot.org/uniprotkb/F1SEL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEL7-1", "url": "https://www.uniprot.org/uniprotkb/F1SEL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRKWALLLPMLLCSLTGPTHMFQSSLVLDTAKILLDNYCFPENLMGMQEAIEQATKSPEILAITDPQTLAHVLTAGVQNSLNDPRLIISYEPSTLEVTPKAPALRNLTLEELIEGLHNSLRHEVLEGNVGYLRVDDIPGQEVMNKLGSFLVVNVWEKLMGTSALVLDLRHCTRGHVSGIPYVISYLHPGNTVLHVDTVYDRPSNTTTEIWTLPEVLGDRYSADKDVVVLTSSHTGGVAEDIAYILKQMRRAIVVGERTVGGALDLQKLRIGQSDFFLTVPVSRSLGPLGEGSQTWEGSGVLPCVGTPAEQALEKALAILKLRRALPGVIQRLQEVLQEYYTLVDRVPALLHHLASMDLSSVVSEEDLVTKLNAGLQAVSEDPRLLVQVVKSKEPSSEPKDEAEEPPEVIPEVPEDEAARRALVDAVFQVSVLPGNVGYLRFDSFADASVLGVLAPYIVHQVWEPLQDTEHLIMDLRQNPGGPSTAVPLLLSYFQGPDPGPVRLFTTYDRRTNVTQEHYSHTELLGQRYSTQGGVYLLISHRTATAAEELAFLMQSLGWATLVGEITAGSLLHTHTVPLLETTEGGLSLTVPVLTFIDNHGECWLGGGVVPDAIVLAEEALDRAQEVLEFHRSLGELVEGTGHLLEAHYARPEVVGQTGALLRAKLAQGAYRTAVDLESLASQLTADLQEMSGDHRLLVFHSPGEMVAEEVPPPPPVVPSPEELSYLIEALFKTEVLPGRLGYLRFDAMAELETVKAIGPQLVQLVWQKLIDTAALVVDLRYNPGSYSTAVPLLCSYFFEAEPRQHLYSVFDRATSRVMEVWTVPQVAGQRYGPQKDLYILVSHTSGSAAEAFAHTMQDLQRATIIGEPTAGGALSVGIYQVGSSPLYASMPTQMALSASTGEAWDLAGVEPDITVPMSVALSTARDIVALRAKVPTVLQTAGKLVADNYASPEMGAKIAVKLSRLQSRYARVTSEASLAEMLEADLQLLSGDPHLKTAHIPEDAKDRIPGIVPMQIPSPEVFEDLIKFSFHTNVLEGNIGYLRFDMFGDRELLTQVSELLVEHVWKKIIHTDALIIDMRFNIGGPTSSISALCSYFFDEGPPILLDKIYNRPNDSVSELWTHTHLTGGSYGSKKSIIILTSSLTAGAAEEFTYIMKRLGRALVIGEVTSGGSQPPQTYHVDDTNLYITIPTARSVGAADGSSWEGVGVVPDVAVPAEGALARAQEMLQHTLLRARRSLRGQRLRRQRQGRAGPLGHIQRTLGHEVLTEAPKGWKRGLLHSSWA", "length": 1284, "header": "tr|F1SEL7-1|F1SEL7_PIG Isoform 1 of Retinol-binding protein 3 OS=Sus scrofa OX=9823 GN=RBP3 PE=1 SV=2 CANONICAL=F1SEL7-1" }, "isoforms": [ { "isoform_ac": "A0A287A908-1", "url": "https://www.uniprot.org/uniprotkb/F1SEL7/entry#A0A287A908-1", "sequence": { "sequence": "MPRKWALLLPMLLCSLTGPTHMFQSSLVLDTAKILLDNYCFPENLMGMQEAIEQATKSPEILAITDPQTLAHVLTAGVQNSLNDPRLIISYEPSTLEVTPKAPALRNLTLEELIEGLHNSLRHEVLEGNVGYLRVDDIPGQEVMNKLGSFLVVNVWEKLMGTSALVLDLRHCTRGHVSGIPYVISYLHPGNTVLHVDTVYDRPSNTTTEIWTLPEVLGDRYSADKDVVVLTSSHTGGVAEDIAYILKQMRRAIVVGERTVGGALDLQKLRIGQSDFFLTVPVSRSLGPLGEGSQTWEGSGVLPCVGTPAEQALEKALAILKLRRALPGVIQRLQEVLQEYYTLVDRVPALLHHLASMDLSSVVSEEDLVTKLNAGLQAVSEDPRLLVQVVKSKEPSSEPKDEAEEPPEVIPEVPEDEAARRALVDAVFQVSVLPGNVGYLRFDSFADASVLGVLAPYIVHQVWEPLQDTEHLIMDLRQNPGGPSTAVPLLLSYFQGPDPGPVRLFTTYDRRTNVTQEHYSHTELLGQRYSTQGGVYLLISHRTATAAEELAFLMQSLGWATLVGEITAGSLLHTHTVPLLETTEGGLSLTVPVLTFIDNHGECWLGGGVVPDAIVLAEEALDRAQEVLEFHRSLGELVEGTGHLLEAHYARPEVVGQTGALLRAKLAQGAYRTAVDLESLASQLTADLQEMSGDHRLLVFHSPGEMVAEEVPPPPPVVPSPEELSYLIEALFKTEVLPGRLGYLRFDAMAELETVKAIGPQLVQLVWQKLIDTAALVVDLRYNPGSYSTAVPLLCSYFFEAEPRQHLYSVFDRATSRVMEVWTVPQVAGQRYGPQKDLYILVSHTSGSAAEAFAHTMQDLQRATIIGEPTAGGALSVGIYQVGSSPLYASMPTQMALSASTGEAWDLAGVEPDITVPMSVALSTARDIVALRAKVPTVLQTAGKLVADNYASPEMGAKIAVKLSRLQSRYARVTSEASLAEMLEADLQLLSGDPHLKTAHIPEDAKDRIPGIVPMQIPSPEVFEDLIKFSFHTNVLEGNIGYLRFDMFGDRELLTQVSELLVEHVWKKIIHTDALIIDMRFNIGGPTSSISALCSYFFDEGPPILLDKIYNRPNDSVSELWTHTHLTGGSYGSKKSIIILTSSLTAGAAEEFTYIMKRLGRALVIGEVTSGGSQPPQTYHVDDTNLYITIPTARSVGAADGSSWEGVGVVPDVAVPAEGALARAQEMLQHTLLRARRSLQDHKPTLFKQESPDRRQAFTPAPFLLAKSK", "length": 1269, "header": "tr|A0A287A908-1|F1SEL7_PIG Computationally mapped isoform of Retinol-binding protein 3 OS=Sus scrofa OX=9823 GN=RBP3 PE=1 SV=1 CANONICAL=F1SEL7-1" }, "locus": { "chromosome": "14", "start_pos": 88501663, "end_pos": 88490016, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054405.1", "url": "https://www.ensembl.org/id/ENSSSCT00000054405.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040300.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040300.1" } ] } }, { "isoform_ac": "A0A8W4FC75-1", "url": "https://www.uniprot.org/uniprotkb/F1SEL7/entry#A0A8W4FC75-1", "sequence": { "sequence": "MPRKWALLLPMLLCSLTGPTHMFQSSLVLDTAKILLDNYCFPENLMGMQEAIEQATKSPEILAITDPQTLAHVLTAGVQNSLNDPRLIISYEPSTLEVTPKAPALRNLTLEELIEGLHNSLRHEVLEGNVGYLRVDDIPGQEVMNKLGSFLVVNVWEKLMGTSALVLDLRHCTRGHVSGIPYVISYLHPGNTVLHVDTVYDRPSNTTTEIWTLPEVLGDRYSADKDVVVLTSSHTGGVAEDIAYILKQMRRAIVVGERTVGGALDLQKLRIGQSDFFLTVPVSRSLGPLGEGSQTWEGSGVLPCVGTPAEQALEKALAILKLRRALPGVIQRLQEVLQEYYTLVDRVPALLHHLASMDLSSVVSEEDLVTKLNAGLQAVSEDPRLLVQVVKSKEPSSEPKDEAEEPPEVIPEVPEDEAARRALVDAVFQVSVLPGNVGYLRFDSFADASVLGVLAPYIVHQVWEPLQDTEHLIMDLRQNPGGPSTAVPLLLSYFQGPDPGPVRLFTTYDRRTNVTQEHYSHTELLGQRYSTQGGVYLLISHRTATAAEELAFLMQSLGWATLVGEITAGSLLHTHTVPLLETTEGGLSLTVPVLTFIDNHGECWLGGGVVPDAIVLAEEALDRAQEVLEFHRSLGELVEGTGHLLEAHYARPEVVGQTGALLRAKLAQGAYRTAVDLESLASQLTADLQEMSGDHRLLVFHSPGEMVAEEVPPPPPVVPSPEELSYLIEALFKTEVLPGRLGYLRFDAMAELETVKAIGPQLVQLVWQKLIDTAALVVDLRYNPGSYSTAVPLLCSYFFEAEPRQHLYSVFDRATSRVMEVWTVPQVAGQRYGPQKDLYILVSHTSGSAAEAFAHTMQDLQRATIIGEPTAGGALSVGIYQVGSSPLYASMPTQMALSASTGEAWDLAGVEPDITVPMSVALSTARDIVALRAKVPTVLQTAGKLVADNYASPEMGAKIAVKLSRLQSRYARVTSEASLAEMLEADLQLLSGDPHLKTAHIPEDAKDRIPGIVPMQVSYKGDLNQQVPKGN", "length": 1031, "header": "tr|A0A8W4FC75-1|F1SEL7_PIG Computationally mapped isoform of Retinol-binding protein 3 OS=Sus scrofa OX=9823 GN=RBP3 PE=1 SV=1 CANONICAL=F1SEL7-1" }, "locus": { "chromosome": "14", "start_pos": 88497409, "end_pos": 88494722, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094304.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094304.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075897.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075897.1" } ] } }, { "isoform_ac": "F1SEL7-1", "url": "https://www.uniprot.org/uniprotkb/F1SEL7/entry#F1SEL7-1", "sequence": { "sequence": "MPRKWALLLPMLLCSLTGPTHMFQSSLVLDTAKILLDNYCFPENLMGMQEAIEQATKSPEILAITDPQTLAHVLTAGVQNSLNDPRLIISYEPSTLEVTPKAPALRNLTLEELIEGLHNSLRHEVLEGNVGYLRVDDIPGQEVMNKLGSFLVVNVWEKLMGTSALVLDLRHCTRGHVSGIPYVISYLHPGNTVLHVDTVYDRPSNTTTEIWTLPEVLGDRYSADKDVVVLTSSHTGGVAEDIAYILKQMRRAIVVGERTVGGALDLQKLRIGQSDFFLTVPVSRSLGPLGEGSQTWEGSGVLPCVGTPAEQALEKALAILKLRRALPGVIQRLQEVLQEYYTLVDRVPALLHHLASMDLSSVVSEEDLVTKLNAGLQAVSEDPRLLVQVVKSKEPSSEPKDEAEEPPEVIPEVPEDEAARRALVDAVFQVSVLPGNVGYLRFDSFADASVLGVLAPYIVHQVWEPLQDTEHLIMDLRQNPGGPSTAVPLLLSYFQGPDPGPVRLFTTYDRRTNVTQEHYSHTELLGQRYSTQGGVYLLISHRTATAAEELAFLMQSLGWATLVGEITAGSLLHTHTVPLLETTEGGLSLTVPVLTFIDNHGECWLGGGVVPDAIVLAEEALDRAQEVLEFHRSLGELVEGTGHLLEAHYARPEVVGQTGALLRAKLAQGAYRTAVDLESLASQLTADLQEMSGDHRLLVFHSPGEMVAEEVPPPPPVVPSPEELSYLIEALFKTEVLPGRLGYLRFDAMAELETVKAIGPQLVQLVWQKLIDTAALVVDLRYNPGSYSTAVPLLCSYFFEAEPRQHLYSVFDRATSRVMEVWTVPQVAGQRYGPQKDLYILVSHTSGSAAEAFAHTMQDLQRATIIGEPTAGGALSVGIYQVGSSPLYASMPTQMALSASTGEAWDLAGVEPDITVPMSVALSTARDIVALRAKVPTVLQTAGKLVADNYASPEMGAKIAVKLSRLQSRYARVTSEASLAEMLEADLQLLSGDPHLKTAHIPEDAKDRIPGIVPMQIPSPEVFEDLIKFSFHTNVLEGNIGYLRFDMFGDRELLTQVSELLVEHVWKKIIHTDALIIDMRFNIGGPTSSISALCSYFFDEGPPILLDKIYNRPNDSVSELWTHTHLTGGSYGSKKSIIILTSSLTAGAAEEFTYIMKRLGRALVIGEVTSGGSQPPQTYHVDDTNLYITIPTARSVGAADGSSWEGVGVVPDVAVPAEGALARAQEMLQHTLLRARRSLRGQRLRRQRQGRAGPLGHIQRTLGHEVLTEAPKGWKRGLLHSSWA", "length": 1284, "header": "tr|F1SEL7-1|F1SEL7_PIG Isoform 1 of Retinol-binding protein 3 OS=Sus scrofa OX=9823 GN=RBP3 PE=1 SV=2 CANONICAL=F1SEL7-1" }, "locus": { "chromosome": "14", "start_pos": 88501663, "end_pos": 88491756, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011356.2", "url": "https://www.ensembl.org/id/ENSSSCT00000011356.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011062.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011062.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1087, "start_aa": "Thr", "end_pos": 1087, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1087", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A908", "url": "https://www.uniprot.org/uniprotkb/A0A287A908" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "CryoEM structure and small-angle X-ray scattering analyses of porcine retinol-binding protein 3.", "journal": "Open Biol.", "date": "2025", "authors": "Kaushik Vineeta, Gessa Luca, Kumar Nelam, Pinkas Maty\u00e1\u0161, Czarnocki-Cieciura Mariusz, Palczewski Krzysztof, Nov\u00e1\u010dek Ji\u0159\u00ed, Fernandes Humberto", "evidence": [ { "database": "UniProtKB", "id": "A0A287A908", "url": "https://www.uniprot.org/uniprotkb/A0A287A908" } ], "reference": [ { "type": "PubMed", "id": "39837501", "url": "https://glygen.org/publication/PubMed/39837501" } ] } ], "pathway": [ { "id": "ssc:100155788", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155788", "resource": "KEGG Pathway" }, { "id": "R-SSC-2187335", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2187335", "resource": "Reactome", "description": "The retinoid cycle in cones (daylight vision)" }, { "id": "R-SSC-2453902", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2453902", "resource": "Reactome", "description": "The canonical retinoid cycle in rods (twilight vision)" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7GV61-1", "protein_name": "Retinol-binding protein 3", "gene_name": "Rbp3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MMKEWVLVLPTLFFCVLASHIQNLFQPSLVLDMAKVLLDNYCFPENLMGMQAAIEQAMKSREILGISDPQTLAQVLTAGVQSSLNDPRLFISYEPSSLEAPQQEPALTNFTREELLDQLRRSIHHEVLEDNVGYLRVDDLPGQEVLSELGGFLVAHVWRQLMGTSSLVLDLRQCAGGHISGIPYVISYLHPGNTVMHVDTIYDRPSNTTTEIWTLPKVLGERYSADKDVVVLTSGRTGGVAEDIAYILKQMRRAIVVGERTEGGALDLQKLRIGQSNFFLTVPVSRSLGPLGGGGQTWEGSGVLPCVGTPAEQALEKALAILTLRRALPGVVLRLQKALQDYYTLVDRVPGLLHHLASMDYSAVVSEEDLVTKLNAGLQAVSEDPRLLVRATGPKESSSRPETGPNDPPEATPEVPKEEAARRALVDSVFQVSVLPGNVGYLRFDRFADASVLRALGPYVLHQVWEPLQDTEHLIMDLRHNPGGPSSAVPLLLSYFQGPEAGPVRLFTTYDRRTNVTQEHFSHRKLLGQRYGNQRGVYLLTSHRTATAAEEFAFLMQSLGWATLVGEITAGSLLHTCTVPLLDSPEGGLALTVPVLTFIDNHGEAWLGGGVVPDAIVLAEEALERAQEVLDFHRSLGALVEGTGRLLEAHYARPDVAGQARALLQSKLVQGAYRTAVDLESLASQLTGDLQEVSEDHRLLVFHSPGELVAEEVPLPPPAVPSPEELSYLIEALFKTDVLPGQLGYLRFDAMAELETVKAIGPQLVRLVWQRLVDTAALVVDLRYNPGSYSSAVPLLCSYFFEAEPRKHLYSVFDRATSRVTEIWTLPLVAGQRYGPHKDLYILMSHTSGSAAEAFAHTMQDLQRATVIGEPTAGGALSVGIYQVGNSPLYASMPTQMALSATTGEAWDLAGVEPDITVPTSEALSTAQDIVALRAKVPTVLQTAGKLVADNYASPELGAKMAAKLSGLQSRYARVTSEGALAEMLGADLQMLSGDPHLKTAHIPEDAKDRIPGIVPMQIPSPEVFEDLIKFSFHTNVLEDNIGYLRFDMFGDCELLTQVSELLVEHIWKKIVHTDALIIDMRFNIGGPTSSISALCSYFFDESPPILLDKIYSRPNDSVSELWTHAQLTGERYGSKKSVAILTSGVTAGAAEEFTYIMKRLGRALVIGEVTSGGCQPPQTYHVDDTHLYITIPTARSVGATDGSSWEGVGVTPDVVVPSELALTRAKETLQQALRG", "length": 1236 }, "evidence": [ { "id": "F1SEL7", "url": "https://omabrowser.org/oma/group/F1SEL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1MLW4-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVRKWALLLPMLLCGLTGPAHLFQPSLVLEMAQVLLDNYCFPENLMGMQGAIEQAIKSQEILSISDPQTLAHVLTAGVQSSLNDPRLVISYEPSTLEAPPRAPAVTNLTLEEIIAGLQDGLRHEILEGNVGYLRVDDIPGQEVMSKLRSFLVANVWRKLVNTSALVLDLRHCTGGHVSGIPYVISYLHPGSTVSHVDTVYDRPSNTTTEIWTLPEALGEKYSADKDVVVLTSSRTGGVAEDIAYILKQMRRAIVVGERTVGGALNLQKLRVGQSDFFLTVPVSRSLGPLGEGSQTWEGSGVLPCVGTPAEQALEKALAVLMLRRALPGVIQRLQEALREYYTLVDRVPALLSHLAAMDLSSVVSEDDLVTKLNAGLQAVSEDPRLQVQVVRPKEASSGPEEEAEEPPEAVPEVPEDEAVRRALVDSVFQVSVLPGNVGYLRFDSFADASVLEVLGPYILHQVWEPLQDTEHLIMDLRQNPGGPSSAVPLLLSYFQSPDASPVRLFSTYDRRTNVTREHFSQTELLGRPYGTQRGVYLLTSHRTATAAEELAFLMQSLGWATLVGEITAGSLLHTHTVSLLETPEGGLALTVPVLTFIDNHGECWLGGGVVPDAIVLAEEALDRAQELLEFHRSLGELVEGTGRLLEAHYARPEVVGQMGALLRAKLAQGAYRTAVDLESLASQLTADLQEMSGDHRLLVFHSPGEMVAEEAPPPPPVVPSPEELSYLIEALFKTEVLPGQLGYLRFDAMAELETVKAVGPQLVQLVWQKLVDTAALVVDLRYNPGSYSTAVPLLCSYFFEAEPRRHLYSVFDRATSRVTEVWTLPHVTGQRYGSHKDLYVLVSHTSGSAAEAFAHTMQDLQRATIIGEPTAGGALSVGIYQVGSSALYASMPTQMAMSASTGEAWDLAGVEPDITVPMSVALSTARDIVTLRAKVPTVLQTAGKLVADNYASPELGVKMAAELSGLQSRYARVTSEAALAELLQADLQVLSGDPHLKTAHIPEDAKDRIPGIVPMQIPSPEVFEDLIKFSFHTNVLEGNVGYLRFDMFGDCELLTQVSELLVEHVWKKIVHTDALIVDMRFNIGGPTSSISALCSYFFDEGPPILLDKIYNRPNDSVSELWTLSQLEGERYGSKKSMVILTSTLTAGAAEEFTYIMKRLGRALVIGEVTSGGCQPPQTYHVDDTDLYLTIPTARSVGAADGSSWEGVGVVPDVAVPAEAALTRAQEMLQHTPLRARRSPRLHGRRKGHHRQSQGRAGSLGRNQGVGRPEVLTEAPSGQKRGLLQCG", "length": 1286 }, "evidence": [ { "id": "F1SEL7", "url": "https://omabrowser.org/oma/group/F1SEL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3V8Q4-1", "protein_name": "Retinol-binding protein 3", "gene_name": "Rbp3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMREWVLVLSTLLCVLAGPTHLFQPSLVLDMAKVLLDNYCFPENLMGMQAAIEQAMKSHEILGISDPQTLAHVLTVGVQSSLNDPRLFISYEPSTLEAPQQAPALTDLTREELLAQIQRNIRHEVLEDNVGYLRVDDLPGQEVLSELGEFLVSHVWKQLTGTSSLVLDLRHCAGGHVSGIPYVISYLHPGNTVLHVDTIYDRPSNTTTEIWTLPKVLGERYSADKDVVVLTSGHTGGVAEDIAYILKQMRRAIVVGERTEGGALDLQKLRIGQSDFFLTVPVSRSLGPLGGGGQTWEGSGVLPCVGIPAEQALEKALAILTLRRALPGVVLRLQEALQDYYTLVDRVPGLLHHLASMDYSAVVSEEDLVTKLNAGLQAVSEDPRLLVRATGPRETPSRPETGPNEPPAVTPEVPKEEDARRALVDSVFQVSVLPGNVGYLRFDRFADASVLKTLGPYVLRQVWEPLQDTEHLIMDLRHNPGGPSSAVPLVLSYFQGPEAGPVRLFTTYDRRTNITQEHFSHKELLGQRYGNRRGVYLLTSHRTATAAEEFAFLMQSLSWATLVGEITAGSLLHTCTVPLLDSPEGGLTLTVPVLTFIDNHGEAWLGGGVVPDAIVLAEEALERAQEVLDFHRSLGALVEGTGRLLEAHYARPEIAEQARDLLQSKLAQGAYRTAVDLESLASQLTADLQEVSEDHRLLVFHSPGELVAEEVPLPPPAIPSPEELSYLIEALFKTDVLPGHLGYLRFDAMAELETVKAIGPQLVRLVWQRLVDTAALVVDLRYNPGSYSSAVPLLCSYFFEEEPRQHLYSVFDRATSRVTEIWTLPLVAGQRYGSHKDLYILMSHTSGSAAEAFAHTMQDLQRATVIGEPTAGGALSVGIYQVDNSPLYASMPTQMALSATTGEAWDLAGVEPDITVPMSEALSTAQDIVALRAKVPTVLQTAGKLVADNYASPELGAKMAAKLSGLQSRYARVTSEGALAEMLGADLQMLSGDPHLKTAHIPEDAKDRIPGIVPMQIPSPEVFEDLIKFSFHTNVFEDNIGYLRFDMFGDCELLIQVSELLVEHIWKKIVHTDALIIDMRFNIGGPTSSISALCSYFFDEAPPVLLDKIYNRPNDSISELWTHSQLTGERYGSKKSVAILTSGVTAGAAEEFTYIMKRLGRALVVGEVTSGGCQPPQTYHVDDTHLYITIPTARSVGATDGSSWEGVGVTPNVVVSSELALTRAKEILQRALRA", "length": 1234 }, "evidence": [ { "id": "F1SEL7", "url": "https://omabrowser.org/oma/group/F1SEL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMREWVLLMSVLLCGLAGPTHLFQPSLVLDMAKVLLDNYCFPENLLGMQEAIQQAIKSHEILSISDPQTLASVLTAGVQSSLNDPRLVISYEPSTPEPPPQVPALTSLSEEELLAWLQRGLRHEVLEGNVGYLRVDSVPGQEVLSMMGEFLVAHVWGNLMGTSALVLDLRHCTGGQVSGIPYIISYLHPGNTILHVDTIYNRPSNTTTEIWTLPQVLGERYGADKDVVVLTSSQTRGVAEDIAHILKQMRRAIVVGERTGGGALDLRKLRIGESDFFFTVPVSRSLGPLGGGSQTWEGSGVLPCVGTPAEQALEKALAILTLRSALPGVVHCLQEVLKDYYTLVDRVPTLLQHLASMDFSTVVSEEDLVTKLNAGLQAASEDPRLLVRAIGPTETPSWPAPDAAAEDSPGVAPELPEDEAIRQALVDSVFQVSVLPGNVGYLRFDSFADASVLGVLAPYVLRQVWEPLQDTEHLIMDLRHNPGGPSSAVPLLLSYFQGPEAGPVHLFTTYDRRTNITQEHFSHMELPGPRYSTQRGVYLLTSHRTATAAEEFAFLMQSLGWATLVGEITAGNLLHTRTVPLLDTPEGSLALTVPVLTFIDNHGEAWLGGGVVPDAIVLAEEALDKAQEVLEFHQSLGALVEGTGHLLEAHYARPEVVGQTSALLRAKLAQGAYRTAVDLESLASQLTADLQEVSGDHRLLVFHSPGELVVEEAPPPPPAVPSPEELTYLIEALFKTEVLPGQLGYLRFDAMAELETVKAVGPQLVRLVWQQLVDTAALVIDLRYNPGSYSTAIPLLCSYFFEAEPRQHLYSVFDRATSKVTEVWTLPQVAGQRYGSHKDLYILMSHTSGSAAEAFAHTMQDLQRATVIGEPTAGGALSVGIYQVGSSPLYASMPTQMAMSATTGKAWDLAGVEPDITVPMSEALSIAQDIVALRAKVPTVLQTAGKLVADNYASAELGAKMATKLSGLQSRYSRVTSEVALAEILGADLQMLSGDPHLKAAHIPENAKDRIPGIVPMQIPSPEVFEELIKFSFHTNVLEDNIGYLRFDMFGDGELLTQVSRLLVEHIWKKIMHTDAMIIDMRFNIGGPTSSIPILCSYFFDEGPPVLLDKIYSRPDDSVSELWTHAQVVGERYGSKKSMVILTSSVTAGTAEEFTYIMKRLGRALVIGEVTSGGCQPPQTYHVDDTNLYLTIPTARSVGASDGSSWEGVGVTPHVVVPAEEALARAKEMLQHNQLRVKRSPGLQDHL", "length": 1247 }, "evidence": [ { "id": "F1SEL7", "url": "https://omabrowser.org/oma/group/F1SEL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P49194-1", "protein_name": "Retinol-binding protein 3", "gene_name": "Rbp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMREWVLVLSTLLWVPAGPTHLFQPSLVLDMAKILLDNYCFPENLMGMQAAIEQAMKSHEILGISDPQTLAQVLTAGVQSSLSDPRLFISYEPSTLEAPQQAPVLTNLTREELLAQIQRNIRHEVLEGNVGYLRVDDLPGQEVLSELGEFLVSHVWRQLMGTSSLVLDLRHCSGGHFSGIPYVISYLHPGNTVMHVDTVYDRPSNTTTEIWTLPEVLGERYSADKDVVVLTSGHTGGVAEDIAYILKQMRRAIVVGERTEGGALDLQKLRIGQSNFFLTVPVSRSLGPLGGGGQTWEGSGVLPCVGTPAEQALEKALAILTLRRALPGVVLRLQEALQDYYTLVDRVPGLLHHLASMDYSAVVSEEDLVTKLNAGLQAVSEDPRLLVRATGPRDSSSRPETGPNESPAATPEVPTEEDARRALVDSVFQVSVLPGNVGYLRFDRFADAAVLETLGPYVLKQVWEPLQDTEHLIMDLRHNPGGPSSAMPLVLSYFQGPEAGPVRLFTTYDRRTNITQEHFSHRELLGQRYGNQRGVYLLTSHRTATAAEEFAFLMQSLGWATLVGEITAGSLLHTCTVPLLDSPQGGLALTVPVLTFIDNHGEAWLGGGVVPDAIVLAEEALERAQEVLDFHRSLGALVEGTGRLLEAHYARPEIAQRARALLQSKLAQGAYRTAVDLESLASQLTADLQEVSEDHRLLVFHSPGELVAEEVPLPPPAVPSPEELSYLIEALFKTDVLPGQLGYLRFDAMAELETVKAIGPQLVQLVWQRLVDTAALIVDLRYNPGSYSSAVPLLCSYFFEAEPRQHLYSVFDRATSRVTEIWTLPLVAGQRYGSHKDLYILMSHTSGSAAEAFAHTMQDLQRATVIGEPTAGGALSVGIYQVGNSPLYASMPTQMALSASTGEAWDLAGVEPDITVPMSEALSTAQDIVVLRAKVPTVLQTAGKLVADNYASPELGAKMAAKLSGLQSRYARVTSEGALAEMLGADLQILSGDPHLKTAHIPEDAKDRIPGIVPMQIPSPEVFEDLIKFSFHTNVLEDNIGYLRFDMFGDCELLTQVSELLVEHIWKKIVHTDALIIDMRFNLGGPTSSISALCSYFFDEAPPILLDKIYNRPNDSVSELWTHTQLTGERYGSKKSVAILTSGVTAGAAEEFTYIMKRLGRALVIGEVTSGGCQPPQTYHVDDTHLYITIPTARSVGAEDGSSWEGVGVTPNVVVSSELALTRAKEILQQALRG", "length": 1234 }, "evidence": [ { "id": "F1SEL7", "url": "https://omabrowser.org/oma/group/F1SEL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "interphotoreceptor matrix", "id": "GO:0033165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033165", "evidence": [ { "database": "UniProtKB", "id": "F1SEL7", "url": "https://www.uniprot.org/uniprotkb/F1SEL7" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SEL7", "url": "https://www.uniprot.org/uniprotkb/F1SEL7" } ], "pmid": "" }, { "name": "cone matrix sheath", "id": "GO:0090658", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090658", "evidence": [ { "database": "UniProtKB", "id": "F1SEL7", "url": "https://www.uniprot.org/uniprotkb/F1SEL7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SEL7", "url": "https://www.uniprot.org/uniprotkb/F1SEL7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "retinal binding", "id": "GO:0016918", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016918", "evidence": [ { "database": "UniProtKB", "id": "F1SEL7", "url": "https://www.uniprot.org/uniprotkb/F1SEL7" } ], "pmid": "" }, { "name": "serine-type peptidase activity", "id": "GO:0008236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008236", "evidence": [ { "database": "UniProtKB", "id": "F1SEL7", "url": "https://www.uniprot.org/uniprotkb/F1SEL7" } ], "pmid": "" }, { "name": "retinol binding", "id": "GO:0019841", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019841", "evidence": [ { "database": "UniProtKB", "id": "F1SEL7", "url": "https://www.uniprot.org/uniprotkb/F1SEL7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1114, "end_pos": 1116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 513, "end_pos": 515, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SEL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEL7" }, { "id": "SM00245", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00245" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tail specific protease", "eco_id": "ECO_0000259", "start_pos": 109, "end_pos": 308, "start_aa": "Thr", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1087 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 107, "end_pos": 109 }, { "start_pos": 1114, "end_pos": 1116 }, { "start_pos": 205, "end_pos": 207 }, { "start_pos": 513, "end_pos": 515 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S907-1", "uniprot_ac": "F1S907", "uniprot_id": "F1S907_PIG", "mass": { "chemical_mass": 38906.0, "monoisotopic_mass": 38906.0 }, "refseq": { "ac": "NP_001230746", "name": "transmembrane protein 59-like precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230746" }, "gene_names": [ { "name": "TMEM59L", "type": "recommended", "evidence": [ { "id": "F1S907", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S907" } ] }, { "name": "TMEM59L", "type": "synonym", "evidence": [ { "id": "NP_001230746", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230746" } ] } ], "protein_names": [ { "name": "Transmembrane protein 59 like", "type": "synonym", "evidence": [ { "id": "F1S907", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S907/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 59-like precursor", "type": "synonym", "evidence": [ { "id": "NP_001230746", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230746" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S907", "url": "https://www.uniprot.org/uniprotkb/F1S907" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM59L", "url": "https://www.uniprot.org/uniprotkb/F1S907", "locus": { "chromosome": "2", "start_pos": 59210792, "end_pos": 59223202, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013911", "url": "https://www.ensembl.org/id/ENSSSCG00000013911" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013911", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013911", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100511310", "url": "https://www.ncbi.nlm.nih.gov/gene/100511310", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022065", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022065", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511310", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511310", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DNAHKVN", "url": "https://omabrowser.org/oma/group/DNAHKVN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S907", "url": "https://www.orthodb.org/?gene=F1S907", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28652", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28652", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28652:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28652:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12280", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12280", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001230746", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230746", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ADP7", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S907", "url": "https://www.uniprot.org/uniprotkb/F1S907", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S907-1", "url": "https://www.uniprot.org/uniprotkb/F1S907-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASVVLMPLLLLLLQPPPATPAPPVRDPFALQLGDTQSCQLRCRDRYPSPQPAQELEEDPTESPHVNAYDRAVLISACERGCRLFSICRFVARSSKPNATQAECEAACVEAYVKETEQQACSEGCWSQNPQLEPEPELEPEQKRKVLEAPSGALSLLDLFSTLCNDLVNSAQGFVSSTWTYYLQTDNGKVVVFQTQPVVESLGHEGTRLQRVEVTWRGSHPEALEVHVDPVGPLDKVRKAKIRVKTSSKAKIESDELQDNDFLSCMSRRSGLPRWILACCLFLSVLVMLWLSCSTLVTAPGQHLKFQPLTLEQHKGFMVEPDWPLYPPPSHAFADSPPPYKLKLDLTKL", "length": 349, "header": "tr|F1S907-1|F1S907_PIG Isoform 1 of Transmembrane protein 59 like OS=Sus scrofa OX=9823 GN=TMEM59L PE=3 SV=1 CANONICAL=F1S907-1" }, "isoforms": [ { "isoform_ac": "A0A287ADP7-1", "url": "https://www.uniprot.org/uniprotkb/F1S907/entry#A0A287ADP7-1", "sequence": { "sequence": "ADSVACAHRVPACRGSQAAAPRPPGAESGVLRREAQELEEDPTESPHVNAYDRAVLISACERGCRLFSICRFVARSSKPNATQAECEAACVEAYVKETEQQACSEGCWSQNPQLEPEPELEPEQKRKVLEAPSGALSLLDLFSTLCNDLVNSAQGFVSSTWTYYLQTDNGKVVVFQTQPVVESLGHEGTRLQRVEVTWRGSHPEALEVHVDPVGPLDKVRKAKIRVKTSSKAKIESDELQDNDFLSCMSRRSGLPRWILACCLFLSVLVMLWLSCSTLVTAPGQHLKFQPLTLEQHKGFMVEPDWPLYPPPSHAFADSPPPYKLKLDLTKL", "length": 331, "header": "tr|A0A287ADP7-1|F1S907_PIG Computationally mapped isoform of Transmembrane protein 59 like OS=Sus scrofa OX=9823 GN=TMEM59L PE=3 SV=1 CANONICAL=F1S907-1" }, "locus": { "chromosome": "2", "start_pos": 59223003, "end_pos": 59211903, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061751.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061751.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042015.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042015.1" } ] } }, { "isoform_ac": "F1S907-1", "url": "https://www.uniprot.org/uniprotkb/F1S907/entry#F1S907-1", "sequence": { "sequence": "MASVVLMPLLLLLLQPPPATPAPPVRDPFALQLGDTQSCQLRCRDRYPSPQPAQELEEDPTESPHVNAYDRAVLISACERGCRLFSICRFVARSSKPNATQAECEAACVEAYVKETEQQACSEGCWSQNPQLEPEPELEPEQKRKVLEAPSGALSLLDLFSTLCNDLVNSAQGFVSSTWTYYLQTDNGKVVVFQTQPVVESLGHEGTRLQRVEVTWRGSHPEALEVHVDPVGPLDKVRKAKIRVKTSSKAKIESDELQDNDFLSCMSRRSGLPRWILACCLFLSVLVMLWLSCSTLVTAPGQHLKFQPLTLEQHKGFMVEPDWPLYPPPSHAFADSPPPYKLKLDLTKL", "length": 349, "header": "tr|F1S907-1|F1S907_PIG Isoform 1 of Transmembrane protein 59 like OS=Sus scrofa OX=9823 GN=TMEM59L PE=3 SV=1 CANONICAL=F1S907-1" }, "locus": { "chromosome": "2", "start_pos": 59216384, "end_pos": 59211903, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015197.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015197.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014791.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014791.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 20, "start_aa": "Thr", "end_pos": 20, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr20", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADP7", "url": "https://www.uniprot.org/uniprotkb/A0A287ADP7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511310", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511310", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AGE2-1", "protein_name": "Transmembrane protein 59 like", "gene_name": "TMEM59L", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "GLREKRETLRSVSESSDAFIGARGDRKRRLLRRTKGDLGGAEKKLKRNGCEATGPRPAALPPSRPLLRRWRFWCPSLGSRHSSAELRSLKGDLAASVPALPHVGAAGRNSDRGTKEDAVLSACYRGCRLFSICHFVDASAGLNTTRAECEAACAEAYIGEEEQWGCRTGCREQLPHVQRREQSAEVKAPSLSVLDLVSSFCTDIVSSAHSFISSTWTFYLQADDGKVVVFQSQPHMEFPLPEAQMTQPEWPGPGDDAHSPQPHAGPQQKEEKSPPGKEPWGKAKPADTPQPEHDFLGCMAKRSGLPRWILAACLFLSIVVMLWLSCASLVTAPEQHIRTQPLSINGDRECLEDPRGLSAFPLPPVIAVTLCPTHGEDVGPLPLKVDLDKTIL", "length": 392 }, "evidence": [ { "id": "F1S907", "url": "https://omabrowser.org/oma/group/F1S907/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q0VCT2-1", "protein_name": "Transmembrane protein 59-like", "gene_name": "TMEM59L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDSVALMPLLLLLLLQPPPATPAPPVRDPFALQLGDTQNCQLRCRDRYPKPQLAQEELGEDPIQSRRAKAYDRAVLTSACERGCRLFSICRFVARSSKPNATQAECEAACVEAYVKETEQQACSEGCWSQNPEPEPEPELEQKRKVLEAPSGALSLLDLFSTLCNDLVNSAQGFVSSTWTYYLQTDNGKVVVFQTQPVVESLGHEGARLQRVEVTWRGSHPEALEVHVDPVGPLDKVRKAKIRVKTSSKAKVESDELQDNDFLSCMSRRSGLPRWILACCLFLSVLVMLWLSCSTLVTAPGQHLKFQPLTLEQHKGYMVEPEWSLYPPPSHAYADSPPPYKLKLDLTKL", "length": 349 }, "evidence": [ { "id": "F1S907", "url": "https://omabrowser.org/oma/group/F1S907/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5HZE8-1", "protein_name": "Transmembrane protein 59-like", "gene_name": "Tmem59l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAVALPLLLLLASPATPTPARDPFSPQLGDTQRCQQRCRQRHPGLPPAQPEPEGPSESPNNKAVLINACERGCRLFSICRFVARSSRPNATETECEAACTEAYVKAKEQQACSEGCWGQIPEPETQLEQKELALDPPSGSLSLRHLFTMLCSDLMSSAQDLISSTWTYSLQTDNRKTQPVVENFAFQGSRLQRVEVTWRGSHPKALEVHMDPMSPLEKVRRAKPHLKTSKAKVESEDQQESDFLSCMSRRSGLPRWVLFCCLFLSVLIILWLSCCTLVTTPGQHLKFQPLTAEQHKGLLVESNWPLYPPLPPAYEDSPPPYKLKLDLTTL", "length": 331 }, "evidence": [ { "id": "F1S907", "url": "https://omabrowser.org/oma/group/F1S907/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TNI2-1", "protein_name": "Transmembrane protein 59-like", "gene_name": "Tmem59l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAVALPLLLLLASLVTPTPARDPFAPQLGDTQRCQQRCRQHHPGSPPAQPEPEGPSESPNNKAILISACERGCRLFSICRFVAKSSRPNATETECEAACTEAYVKAAEQRACSEGCWGQIPEPETQLEQKDLALDPPRGRLSLRYLFSMLCSDLMSSAQGFLSSSWTYSLQTDNRKVVVFQTQPVAENFAFQGSHLQRVEVTWRRSHPKALELHMDPVGPLDKVRKAKPRVKTSKAKVESEDQQESDFLSCMSRRSGLPRWVLFCCLFLSILIMLWLSCCTLVTTPGQHLKFQPLTAEQHKGLLVESDWPLYPPLPPPAYEDSTPPYKLKLDLTTL", "length": 337 }, "evidence": [ { "id": "F1S907", "url": "https://omabrowser.org/oma/group/F1S907/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UK28-1", "protein_name": "Transmembrane protein 59-like", "gene_name": "TMEM59L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAVALMPPPLLLLLLLASPPAASAPSARDPFAPQLGDTQNCQLRCRDRDLGPQPSQAGLEGASESPYDRAVLISACERGCRLFSICRFVARSSKPNATQTECEAACVEAYVKEAEQQACSHGCWSQPAEPEPEQKRKVLEAPSGALSLLDLFSTLCNDLVNSAQGFVSSTWTYYLQTDNGKVVVFQTQPIVESLGFQGGRLQRVEVTWRGSHPEALEVHVDPVGPLDKVRKAKIRVKTSSKAKVESEEPQDNDFLSCMSRRSGLPRWILACCLFLSVLVMLWLSCSTLVTAPGQHLKFQPLTLEQHKGFMMEPDWPLYPPPSHACEDSLPPYKLKLDLTKL", "length": 342 }, "evidence": [ { "id": "F1S907", "url": "https://omabrowser.org/oma/group/F1S907/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1S907", "url": "https://www.uniprot.org/uniprotkb/F1S907" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "branching involved in ureteric bud morphogenesis", "id": "GO:0001658", "url": 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"name": "dnaJ homolog subfamily C member 27 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943434" }, "gene_names": [ { "name": "DNAJC27", "type": "recommended", "evidence": [ { "id": "F1SDL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDL3" } ] }, { "name": "DNAJC27", "type": "synonym", "evidence": [ { "id": "XP_020943434", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943434" } ] } ], "protein_names": [ { "name": "DnaJ homolog subfamily C member 27", "type": "recommended", "evidence": [ { "id": "F1SDL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDL3/entry#names_and_taxonomy" } ] }, { "name": "Rab and DnaJ domain-containing protein", "type": "synonym", "evidence": [ { "id": "F1SDL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDL3/entry#names_and_taxonomy" } ] }, { "name": "dnaJ homolog subfamily C member 27 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020943434", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943434" } ] } ], "function": [ { "annotation": "GTPase which can activate the MEK/ERK pathway and induce cell transformation when overexpressed. May act as a nuclear scaffold for MAPK1, probably by association with MAPK1 nuclear export signal leading to enhanced ERK1/ERK2 signaling.", "evidence": [ { "database": "UniProtKB", "id": "F1SDL3", "url": "https://www.uniprot.org/uniprotkb/F1SDL3#function" }, { "database": "UniProtKB", "id": "ARBA00003626", "url": "https://www.uniprot.org/uniprotkb/ARBA00003626#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDL3", "url": "https://www.uniprot.org/uniprotkb/F1SDL3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DNAJC27", "url": "https://www.uniprot.org/uniprotkb/F1SDL3", "locus": { "chromosome": "3", "start_pos": 113857113, "end_pos": 113816772, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008577", "url": "https://www.ensembl.org/id/ENSSSCG00000008577" } ] } } ], "crossref": [ { "id": "F1SDL3", "url": "https://alphafold.ebi.ac.uk/entry/F1SDL3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008577", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008577", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04119", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04119", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100738251", "url": "https://www.ncbi.nlm.nih.gov/gene/100738251", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100738251", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738251", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NMENVVF", "url": "https://omabrowser.org/oma/group/NMENVVF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287ANI3", "url": "https://www.orthodb.org/?gene=A0A287ANI3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SDL3", "url": "https://www.orthodb.org/?gene=F1SDL3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47981", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47981", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47981:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47981:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020943434", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943434", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ANI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ANI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANI3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDL3", "url": "https://www.uniprot.org/uniprotkb/F1SDL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDL3-1", "url": "https://www.uniprot.org/uniprotkb/F1SDL3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEANVPKRKEPGKSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQDLGPHGNMENIVFVVCANKIDCAKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYVSIVDLCDNGGKRPITNSSASFTKEQADTIRRIRNSKDSWDMLGVKPGASRDEVNKAYRRLAVLLHPDKCVAPGSEDAFKAVVSARTALLKNIK", "length": 273, "header": "tr|F1SDL3-1|F1SDL3_PIG Isoform 1 of DnaJ homolog subfamily C member 27 OS=Sus scrofa OX=9823 GN=DNAJC27 PE=3 SV=2 CANONICAL=F1SDL3-1" }, "isoforms": [ { "isoform_ac": "A0A287ANI3-1", "url": "https://www.uniprot.org/uniprotkb/F1SDL3/entry#A0A287ANI3-1", "sequence": { "sequence": "MEANVPKRKEPGKSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQDLGPHGNMENIVFVVCANKIDCAKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQG", "length": 177, "header": "tr|A0A287ANI3-1|F1SDL3_PIG Computationally mapped isoform of DnaJ homolog subfamily C member 27 OS=Sus scrofa OX=9823 GN=DNAJC27 PE=3 SV=1 CANONICAL=F1SDL3-1" }, "locus": { "chromosome": "3", "start_pos": 113853329, "end_pos": 113816921, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045473.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045473.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045627.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045627.1" } ] } }, { "isoform_ac": "F1SDL3-1", "url": "https://www.uniprot.org/uniprotkb/F1SDL3/entry#F1SDL3-1", "sequence": { "sequence": "MEANVPKRKEPGKSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQDLGPHGNMENIVFVVCANKIDCAKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYVSIVDLCDNGGKRPITNSSASFTKEQADTIRRIRNSKDSWDMLGVKPGASRDEVNKAYRRLAVLLHPDKCVAPGSEDAFKAVVSARTALLKNIK", "length": 273, "header": "tr|F1SDL3-1|F1SDL3_PIG Isoform 1 of DnaJ homolog subfamily C member 27 OS=Sus scrofa OX=9823 GN=DNAJC27 PE=3 SV=2 CANONICAL=F1SDL3-1" }, "locus": { "chromosome": "3", "start_pos": 113853456, "end_pos": 113816921, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009386.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009386.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009146.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009146.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ANI3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738251", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738251", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A5D7F5-1", "protein_name": "DnaJ homolog subfamily C member 27", "gene_name": "DNAJC27", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEASMPKRKEPGKSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGDPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDTWLAEMKQDLGPHGNMENIVFAVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYLSIVDLCENGGKRPNTNSSASFTKEQADTIRRIRSSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIK", "length": 273 }, "evidence": [ { "id": "F1SDL3", "url": "https://omabrowser.org/oma/group/F1SDL3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3GXP2-1", "protein_name": "DnaJ homolog subfamily C member 27", "gene_name": "Dnajc27", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "METNVPKRKEPAKSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREVKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDLWLAEMKQELGPHGNMDNIVFVVCANKIDCTKHRCIDESEGRLWAESRGFLYFETSAQTGEGINEMFQTFYVSIVDLCENGGKRPTANNSASFTKEQADTIRRIRNSKDSWDMLGVRPGASREEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIK", "length": 273 }, "evidence": [ { "id": "F1SDL3", "url": "https://omabrowser.org/oma/group/F1SDL3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6IMK3-1", "protein_name": "DnaJ homolog subfamily C member 27", "gene_name": "dnajc27", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDTNVQKRRENKKSLRVKVISLGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDSQGVILVYDVGLRESFDALDSWLTEMKQEMGSQANMENIIFVVCANKVDLTKRRVVDESEGRLWAESRGFHYFETSAQSGEGINEMFQSFFSSITDMCENGGKRPTPEVSVGFTKEQADTIRRIRNSKDSWDMLGVKPGATREEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTSLLKNIK", "length": 273 }, "evidence": [ { "id": "F1SDL3", "url": "https://omabrowser.org/oma/group/F1SDL3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6IMM1-1", "protein_name": "DnaJ homolog subfamily C member 27", "gene_name": "DNAJC27", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEANAPKRKEARKSLRIKVISMGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFDALDAWLAEMKQELGPHGNMDNIVFVVCANKIDCTKHRSVDESEGRLWAESRGFLYFETSAQTGEGINEMFQTFYSAIIDLCDNGGKRPPSSMGVGFTKEQADAIRRIRNSKDSWDMLGVKPGATRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIK", "length": 273 }, "evidence": [ { "id": "F1SDL3", "url": "https://omabrowser.org/oma/group/F1SDL3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8CFP6-1", "protein_name": "DnaJ homolog subfamily C member 27", "gene_name": "Dnajc27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METNVPKRKEPAKSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMDNIVFVVCANKIDCSKHRCIDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYLSIVDLCENGGKRPTASSSASFTKEQADTIRRIRNSKDSWEMLGVRPGASREEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIK", "length": 273 }, "evidence": [ { "id": "F1SDL3", "url": "https://omabrowser.org/oma/group/F1SDL3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NZQ0-1", "protein_name": "DnaJ homolog subfamily C member 27", "gene_name": "DNAJC27", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEANMPKRKEPGRSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYISIVDLCENGGKRPTTNSSASFTKEQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIK", "length": 273 }, "evidence": [ { "id": "F1SDL3", "url": "https://omabrowser.org/oma/group/F1SDL3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F1SDL3", "url": "https://www.uniprot.org/uniprotkb/F1SDL3" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1SDL3", "url": "https://www.uniprot.org/uniprotkb/F1SDL3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "phagocytic vesicle membrane", "id": "GO:0030670", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030670", "evidence": [ { "database": "UniProtKB", "id": "F1SDL3", "url": "https://www.uniprot.org/uniprotkb/F1SDL3" } ], "pmid": "" }, { "name": "nucleus", 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"sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 196, "end_pos": 198 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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Recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS69", "url": "https://www.uniprot.org/uniprotkb/A0A287AS69#function" }, { "database": "UniProtKB", "id": "ARBA00057298", "url": "https://www.uniprot.org/uniprotkb/ARBA00057298#function" }, { "database": "UniProtKB", "id": "A0A287BLL1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLL1#function" }, { "database": "UniProtKB", "id": "F1SDK2", "url": "https://www.uniprot.org/uniprotkb/F1SDK2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDK2", "url": "https://www.uniprot.org/uniprotkb/F1SDK2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EBF3", "url": "https://www.uniprot.org/uniprotkb/F1SDK2", "locus": { "chromosome": "14", "start_pos": 138819848, "end_pos": 138935462, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010757", "url": "https://www.ensembl.org/id/ENSSSCG00000010757" } ] } } ], "crossref": [ { "id": "F1SDK2", "url": "https://alphafold.ebi.ac.uk/entry/F1SDK2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010757", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010757", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01175", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01175", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11606", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11606", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153848", "url": "https://www.ncbi.nlm.nih.gov/gene/100153848", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003523", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003523", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032200", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032200", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038006", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038006", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038173", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038173", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NEAATPC", "url": "https://omabrowser.org/oma/group/NEAATPC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BLL1", "url": "https://www.orthodb.org/?gene=A0A287BLL1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SDK2", "url": "https://www.orthodb.org/?gene=F1SDK2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10747", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10747", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01833", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01833", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16422", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16422", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16423", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16423", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003359450", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003359450", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AS69", "url": "https://www.uniprot.org/uniprotkb/A0A287AS69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AS69-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS69-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLL1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLL1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDK2", "url": "https://www.uniprot.org/uniprotkb/F1SDK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDK2-1", "url": "https://www.uniprot.org/uniprotkb/F1SDK2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFGIQENIPRGGTTMKEEPLGSGMNPVRSWMHTAGVVDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVEKEKEPNNEKTNNGIHYKLQLLYSNGVRTEQDLYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTAPSYLDNATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHNQIPALGNTPAHTGMMGVNSFSSQLAVNVSETSQANDQVGYSRNTSSVSPRGYVPSSTPQQSNYNTVSTSMNGYGSGAMANLGVPGSPGFLNGSSANSPYGIVPSSPTMAASSVTLPSNCSSTHGIFSFSPANVISAVKQKSAFAPVVRPQASPPPSCTSANGNGLQAMSGLVVPPM", "length": 596, "header": "tr|F1SDK2-1|F1SDK2_PIG Isoform 1 of Transcription factor COE3 OS=Sus scrofa OX=9823 GN=EBF3 PE=3 SV=4 CANONICAL=F1SDK2-1" }, "isoforms": [ { "isoform_ac": "A0A287AS69-1", "url": "https://www.uniprot.org/uniprotkb/F1SDK2/entry#A0A287AS69-1", "sequence": { "sequence": "MFGIQENIPRGGTTMKEEPLGSGMNPVRSWMHTAGVVDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVEKEKEPNNEKTNNGIHYKLQLLYSNGVRTEQDLYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHNQIPALGNTPAHTGMMGVNSFSSQLAVNVSETSQANDQVGYSRNTSSVSPRGYVPSSTPQQSNYNTVSTSMNGYGSGAMANLGVPGSPGFLNGSSANSPYGIVPSSPTMAASSVTLPSNCSSTHGIFSFSPANVISAVKQKSAFAPVVRPQASPPPSCTSANGNGLQGEGAPA", "length": 583, "header": "tr|A0A287AS69-1|F1SDK2_PIG Computationally mapped isoform of Transcription factor COE3 OS=Sus scrofa OX=9823 GN=EBF3 PE=3 SV=1 CANONICAL=F1SDK2-1" }, "locus": { "chromosome": "14", "start_pos": 138935412, "end_pos": 138824672, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041315.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041315.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046914.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046914.1" } ] } }, { "isoform_ac": "A0A287BLL1-1", "url": "https://www.uniprot.org/uniprotkb/F1SDK2/entry#A0A287BLL1-1", "sequence": { "sequence": "MFGIQENIPRGGTTMKEEPLGSGMNPVRSWMHTAGVVDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVEKEKEPNNEKTNNGIHYKLQLLYSNGVRTEQDLYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTAPSYLDNATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHNQIPALGNTPAHTGMMGVNSFSSQLAVNVSETSQANDQVGYSRNTSSVSPRGYVPSSTPQQSNYNTVSTSMNGYGSGAMANLGVPGSPGFLNGSSANSPYGIVPSSPTMAASSVTLPSNCSSTHGIFSFSPANVISAVKQKSAFAPVVRPQASPPPSCTSANGNGLQGSLLGAEDATVEKTNWPFCEVGGIFHFDELMLKKGTGKLCLGW", "length": 629, "header": "tr|A0A287BLL1-1|F1SDK2_PIG Computationally mapped isoform of Transcription factor COE3 OS=Sus scrofa OX=9823 GN=EBF3 PE=3 SV=2 CANONICAL=F1SDK2-1" }, "locus": { "chromosome": "14", "start_pos": 138935412, "end_pos": 138822517, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042984.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042984.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056959.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056959.2" } ] } }, { "isoform_ac": "F1SDK2-1", "url": "https://www.uniprot.org/uniprotkb/F1SDK2/entry#F1SDK2-1", "sequence": { "sequence": "MFGIQENIPRGGTTMKEEPLGSGMNPVRSWMHTAGVVDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVEKEKEPNNEKTNNGIHYKLQLLYSNGVRTEQDLYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTAPSYLDNATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHNQIPALGNTPAHTGMMGVNSFSSQLAVNVSETSQANDQVGYSRNTSSVSPRGYVPSSTPQQSNYNTVSTSMNGYGSGAMANLGVPGSPGFLNGSSANSPYGIVPSSPTMAASSVTLPSNCSSTHGIFSFSPANVISAVKQKSAFAPVVRPQASPPPSCTSANGNGLQAMSGLVVPPM", "length": 596, "header": "tr|F1SDK2-1|F1SDK2_PIG Isoform 1 of Transcription factor COE3 OS=Sus scrofa OX=9823 GN=EBF3 PE=3 SV=4 CANONICAL=F1SDK2-1" }, "locus": { "chromosome": "14", "start_pos": 138935412, "end_pos": 138822503, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011769.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011769.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011467.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011467.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AS69", "url": "https://www.uniprot.org/uniprotkb/A0A287AS69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4IWI1-1", "protein_name": "Transcription factor COE1-A", "gene_name": "ebf1a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFGIQDSIQRSGSSMKEEPIGAGMNAVRTWMQGAGVLDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTSFVGFVEKEKESTGEKTNNGIHYRLQLLYSNGIRTEQDFYVRLIDSMTKQAIIYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVSVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTPSYLEHATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAADIAEALYNVPRGHNQLPGLTNSSVHSGMMGVNSFHSQLAVNVSDSTQAANQGFSRNTSSVSPHGYVPSTTPQQSSYSTVSTSMNGYGNAGMTTLGGSPNFLNGSAANSPYAIVPSSPTMASSTSLPSNCSSSSGIFSFSPANMVSAVKQKSAFAPVVRPQASPPPTCTSANGNGLQVIPGMIVPPM", "length": 591 }, "evidence": [ { "id": "F1SDK2", "url": "https://omabrowser.org/oma/group/F1SDK2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "O08791-1", "protein_name": "Transcription factor COE3", "gene_name": "Ebf3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFGIQENIPRGGTTMKEEPLGSGMNPVRSWMHTAGVVDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVEKEKEPNNEKTNNGIHYKLQLLYSNGVRTEQDLYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTAPSYLENATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHNQIPTLGNTPAHTGMMGVNSFSSQLAVNVSETSQANDQVGYSRNTSSVSPRGYVPSSTPQQSNYNTVSTSMNGYGSGAMANLGVPGSPGFLNGSSANSPYGIVPSSPTMAASSVTLPSNCSSTHGIFSFSPANVISAVKQKSAFAPVVRPQASPPPSCTSANGNGLQAMSGLVVPPM", "length": 596 }, "evidence": [ { "id": "F1SDK2", "url": "https://omabrowser.org/oma/group/F1SDK2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q63398-1", "protein_name": "Transcription factor COE1", "gene_name": "Ebf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFGIQESIQRSGSSMKEEPLGSGMNAVRTWMQGAGVLDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSEASQATNQGFTRNSSSVSPHGYVPSTTPQQTNYNSVTTSMNGYGSAAMSNLGGSPTFLNGSAANSPYAIVPSSPTMASSTSLPSNCSSSSGIFSFSPANMVSAVKQKSAFAPVVRPQTSPPPTCTSTNGNSLQAISGMIVPPM", "length": 584 }, "evidence": [ { "id": "F1SDK2", "url": "https://omabrowser.org/oma/group/F1SDK2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9H4W6-1", "protein_name": "Transcription factor COE3", "gene_name": "EBF3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"categories": [ "Protein Classification" ] }, { "id": "PTHR13578:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13578:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05066", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05066", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13919", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13919", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13922", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13922", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5689603", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003125381", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125381", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ATN4", 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"length": 1543, "header": "tr|F1SDL7-1|F1SDL7_PIG Isoform 1 of ASXL transcriptional regulator 2 OS=Sus scrofa OX=9823 GN=ASXL2 PE=3 SV=5 CANONICAL=F1SDL7-1" }, "isoforms": [ { "isoform_ac": "A0A287ATN4-1", "url": "https://www.uniprot.org/uniprotkb/F1SDL7/entry#A0A287ATN4-1", "sequence": { "sequence": 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"length": 1329, "header": "tr|A0A287ATN4-1|F1SDL7_PIG Computationally mapped isoform of ASXL transcriptional regulator 2 OS=Sus scrofa OX=9823 GN=ASXL2 PE=3 SV=3 CANONICAL=F1SDL7-1" }, "locus": { "chromosome": "3", "start_pos": 113176431, "end_pos": 113134977, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062944.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062944.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047233.3", "url": "https://www.ensembl.org/id/ENSSSCP00000047233.3" } ] } }, { "isoform_ac": "F1SDL7-1", "url": "https://www.uniprot.org/uniprotkb/F1SDL7/entry#F1SDL7-1", "sequence": { "sequence": "MTVAAACTVRTQYGSGGSSGNGSRRTGRFIDFPPPPPPRAPPPPLPLLGCSSGLTSPFSHLSRHRGKNSAGQSRQGGRLEPGHGSLPVSSRPDMREKGRRKKGRTWAEAAKTVLEKYPNTPMSHKEILQVIQREGLKEISGTSPLACLNAMLHTNSRGEEGIFYKVPGRMGVYTLKKDVPDGVKELSEGSEESSDGQSDSQSSENSSSSSDGGSNKEGKKSRWKRKVSSRLSQPSSPQSGCPSPTIPAGKVISPSQKHSKKALKQALKQQQQKKQQQQQCRPSMSISSNQHLSLKTVKAASDSIPAKPAIWEGKQSDGQSSSPQNSNSSFSSSVKVDNPLLGLGKKSFPRSDRLHTRQMKRTKCAEIDVETPDSILVNTNLRALINKHTFSVLPGDCQQRLLLLLPEVDRQVGPDGLMKLNGSALNNEFFTSAAQGWKERLSEGEFTPEMQVRIRQELEKEKKVEPWKEQFFESYYGQSSGLSLEDSKKLTASPSDPEIKNTSAEQPKPVLPSEASPVSTVPVIPHYEAKEVLQMPSPGRKEEQEGQDKVQPGSQSIEPLLSLATSTNELSSVPVIKGPKDEALLEQKPVASPEQESEKENHLTTTSCCNRNESQEAAVTSLSKPRSPGVEATVMKPTVEAGPQETTMKEPPSALADHSPESLKRKSSLTHEEAPTSWEKRPRVIENRQHQQPFQVSPQPFLCRGDRVPVRKVPPLKIPVSRISPMPFPTSQVSPRARFPVSITSPNRTGARTLADIKAKAQLVKAQRAAAAAAAAAAAAASVGGTIPGPGPGGGQGPGEGGERKAARGESPDSNRVSETGKGPTLELAGTGSRGDTRELLSCGPETQPQSESKTPGQAQSHSVSGAQLQQTPPVAPTSAISGACARVSPPAHTHTPPPALGKLSNEKLNSTRATATVASPSHPPGPSNCRQEKAPPPANPAPVSGASPVHFIADGIVEPKAGSSKNTSNPSSSAERSASASVDMTPFPLTSLLTTATLEKLPVPQVTVTRAPTGSAPSSLSTLPAAPSLKTPGTSNMNGPIARPSSSIPANNPLVTQLLQGKDVPMEQILPKPLTKVEMKTVPLTTKDEKGMGAPTGTNITENSTREEVNERQSHPATQQLGKTLQSKPLPQVPRPPQLFSGKDLRDSGIDTHQYQEGLSKATQDQILQTLIQRVRRQNVFSFAQPSQFNFTHSGFQLEDISTSQRFMLGFAGRRTSKPAMAGHYLLNISTYGRGSESFRRTHSVNAEDRFCLSSPTETLKTGCTDCKDAAGDSSSSSSSSKDTDEESTGDEQDSVMVKEEPQASEGSAKCEASSGPHSRETLSINDCSAKKNVKAETPVPEQTTLNKENYLFTRGQTFDEKTLARDFIQAAQKQMAHAVRGKTLRSSPELFNPAALRLPADSPTHQPLLLPPLQTPKLYGSPTQLGPSYKGMINVATSSDMDHNSAVPGMPDCSQVSSNVSDVMSFSVTVTTIPASQAMNPSSHGQTIPVQAFPEENSIEDTPSKCYCRLKAMIMCKGCGAFCHDDCIGPSKLCVSCLVVR", "length": 1543, "header": "tr|F1SDL7-1|F1SDL7_PIG Isoform 1 of ASXL transcriptional regulator 2 OS=Sus scrofa OX=9823 GN=ASXL2 PE=3 SV=5 CANONICAL=F1SDL7-1" }, "locus": { "chromosome": "3", "start_pos": 113176431, "end_pos": 113044912, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009382.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009382.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009142.5", "url": "https://www.ensembl.org/id/ENSSSCP00000009142.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 878, "start_aa": "Thr", "end_pos": 878, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr878", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ATN4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATN4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515136", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515136", "resource": "KEGG Pathway" }, { "id": "R-SSC-5689603", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "resource": "Reactome", "description": "UCH proteinases" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SDL7", "url": "https://www.uniprot.org/uniprotkb/F1SDL7" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SDL7", "url": "https://www.uniprot.org/uniprotkb/F1SDL7" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SDL7", "url": "https://www.uniprot.org/uniprotkb/F1SDL7" } ], "pmid": "" }, { "name": "peroxisome proliferator activated receptor binding", "id": "GO:0042975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042975", "evidence": [ { "database": "UniProtKB", "id": "F1SDL7", "url": "https://www.uniprot.org/uniprotkb/F1SDL7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SDL7", "url": "https://www.uniprot.org/uniprotkb/F1SDL7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SDL7", "url": "https://www.uniprot.org/uniprotkb/F1SDL7" } ], "pmid": "" }, { "name": "PR-DUB complex", "id": "GO:0035517", 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"https://www.uniprot.org/uniprotkb/F1SDL7" } ], "pmid": "" }, { "name": "animal organ morphogenesis", "id": "GO:0009887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009887", "evidence": [ { "database": "UniProtKB", "id": "F1SDL7", "url": "https://www.uniprot.org/uniprotkb/F1SDL7" } ], "pmid": "" }, { "name": "positive regulation of peroxisome proliferator activated receptor signaling pathway", "id": "GO:0035360", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035360", "evidence": [ { "database": "UniProtKB", "id": "F1SDL7", "url": "https://www.uniprot.org/uniprotkb/F1SDL7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1100, "end_pos": 1102, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1104, "end_pos": 1106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1191, "end_pos": 1193, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1229, "end_pos": 1231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1461, 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S8V7-1", "uniprot_ac": "F1S8V7", "uniprot_id": "F1S8V7_PIG", "mass": { "chemical_mass": 52386.0, "monoisotopic_mass": 52386.0 }, "refseq": { "ac": "XP_003483585", "name": "carboxypeptidase N catalytic chain isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483585" }, "gene_names": [ { "name": "CPN1", "type": "recommended", "evidence": [ { "id": "F1S8V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8V7" } ] }, { "name": "CPN1", "type": "synonym", "evidence": [ { "id": "XP_003483585", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483585" } ] } ], "protein_names": [ { "name": "Carboxypeptidase N catalytic chain", "type": "recommended", "evidence": [ { "id": "F1S8V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8V7/entry#names_and_taxonomy" } ] }, { "name": "3.4.17.3", "type": "synonym", "evidence": [ { "id": "F1S8V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8V7/entry#names_and_taxonomy" } ] }, { "name": "Carboxypeptidase N polypeptide 1", "type": "synonym", "evidence": [ { "id": "F1S8V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8V7/entry#names_and_taxonomy" } ] }, { "name": "Carboxypeptidase N small subunit", "type": "synonym", "evidence": [ { "id": "F1S8V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8V7/entry#names_and_taxonomy" } ] }, { "name": "carboxypeptidase N catalytic chain isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003483585", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483585" } ] } ], "function": [ { "annotation": "Protects the body from potent vasoactive and inflammatory peptides containing C-terminal Arg or Lys (such as kinins or anaphylatoxins) which are released into the circulation.", "evidence": [ { "database": "UniProtKB", "id": "F1S8V7", "url": "https://www.uniprot.org/uniprotkb/F1S8V7#function" }, { "database": "UniProtKB", "id": "ARBA00059780", "url": "https://www.uniprot.org/uniprotkb/ARBA00059780#function" }, { "database": "UniProtKB", "id": "A0A287AZZ2", "url": "https://www.uniprot.org/uniprotkb/A0A287AZZ2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S8V7", "url": "https://www.uniprot.org/uniprotkb/F1S8V7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CPN1", "url": "https://www.uniprot.org/uniprotkb/F1S8V7", "locus": { "chromosome": "14", "start_pos": 111182793, "end_pos": 111227198, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010545", "url": "https://www.ensembl.org/id/ENSSSCG00000010545" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010545", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010545", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11308", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11308", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157984", "url": "https://www.ncbi.nlm.nih.gov/gene/100157984", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000834", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000834", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057246", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057246", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157984", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157984", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CEEYRHG", "url": "https://omabrowser.org/oma/group/CEEYRHG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S8V7", "url": "https://www.orthodb.org/?gene=F1S8V7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11532", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11532", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11532:SF80", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11532:SF80", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00246", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00246", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-977606", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003483585", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483585", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AZZ2", "url": "https://www.uniprot.org/uniprotkb/A0A287AZZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8V7", "url": "https://www.uniprot.org/uniprotkb/F1S8V7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8V7-1", "url": "https://www.uniprot.org/uniprotkb/F1S8V7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDLVAIFLHLLLFKLVAPVTFRHHRYDDLVRTLYKVHNECPYITRVYSIGRSVKGRHLYVLEFSDYPGNHEPLEPEVKYVGNMHGNEVLGRELLLQLSEFLCEEFRNGNQRIVRLVESTRIHILPSMNPDGYEVAAAQGRNISGYLIGRNNANGVDLNRNFPDLNTYIYYNEKNGGPNHHLPLPDNWKSQVEPETQAVIQWIRSFNFVLSANLHGGAVVANYPYDKSLEHRVRGFRHPTTTPTPDDKLFQKLAKVYSYAHGWMHQGWNCGDYFPDGITNGASWYSLSKGMQDFNYLHTNCFEITLELSCDKFPPQEELQREWLGNREALIQFLEQVHQGIKGMVLDENYNNLADAVISVSGINHDVTSGAQGDYFRLLLPGTYTVTATAPGFDPETVSVTVGPGEPKLVNFQLKRSTPPAAPKKRVPNSGQRVKVLPKKVQPRAARKKEMKKKQTQRAPA", "length": 461, "header": "tr|F1S8V7-1|F1S8V7_PIG Isoform 1 of Carboxypeptidase N catalytic chain OS=Sus scrofa OX=9823 GN=CPN1 PE=1 SV=1 CANONICAL=F1S8V7-1" }, "isoforms": [ { "isoform_ac": "A0A287AZZ2-1", "url": "https://www.uniprot.org/uniprotkb/F1S8V7/entry#A0A287AZZ2-1", "sequence": { "sequence": "MEALCWRLLNVLDGRNGTPAGPRSSLTPSMVDNAQEANQKTGDTKSDVEPEVKYVGNMHGNEVLGRELLLQLSEFLCEEFRNGNQRIVRLVESTRIHILPSMNPDGYEVAAAQGRNISGYLIGRNNANGVDLNRNFPDLNTYIYYNEKNGGPNHHLPLPDNWKSQVEPETQAVIQWIRSFNFVLSANLHGGAVVANYPYDKSLEHRVRGFRHPTTTPTPDDKLFQKLAKVYSYAHGWMHQGWNCGDYFPDGITNGASWYSLSKGMQDFNYLHTNCFEITLELSCDKFPPQEELQREWLGNREALIQFLEQVHQGIKGMVLDENYNNLADAVISVSGINHDVTSGAQGDYFRLLLPGTYTVTATAPGFDPETVSVTVGPGEPKLVNFQLKRSTPPAAPKKRVPNSGQRVKVLPKKVQPRAARKKEMKKKQTQRAPA", "length": 435, "header": "tr|A0A287AZZ2-1|F1S8V7_PIG Computationally mapped isoform of Carboxypeptidase N catalytic chain OS=Sus scrofa OX=9823 GN=CPN1 PE=1 SV=1 CANONICAL=F1S8V7-1" }, "locus": { "chromosome": "14", "start_pos": 111217179, "end_pos": 111182910, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061659.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061659.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049530.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049530.1" } ] } }, { "isoform_ac": "F1S8V7-1", "url": "https://www.uniprot.org/uniprotkb/F1S8V7/entry#F1S8V7-1", "sequence": { "sequence": "MSDLVAIFLHLLLFKLVAPVTFRHHRYDDLVRTLYKVHNECPYITRVYSIGRSVKGRHLYVLEFSDYPGNHEPLEPEVKYVGNMHGNEVLGRELLLQLSEFLCEEFRNGNQRIVRLVESTRIHILPSMNPDGYEVAAAQGRNISGYLIGRNNANGVDLNRNFPDLNTYIYYNEKNGGPNHHLPLPDNWKSQVEPETQAVIQWIRSFNFVLSANLHGGAVVANYPYDKSLEHRVRGFRHPTTTPTPDDKLFQKLAKVYSYAHGWMHQGWNCGDYFPDGITNGASWYSLSKGMQDFNYLHTNCFEITLELSCDKFPPQEELQREWLGNREALIQFLEQVHQGIKGMVLDENYNNLADAVISVSGINHDVTSGAQGDYFRLLLPGTYTVTATAPGFDPETVSVTVGPGEPKLVNFQLKRSTPPAAPKKRVPNSGQRVKVLPKKVQPRAARKKEMKKKQTQRAPA", "length": 461, "header": "tr|F1S8V7-1|F1S8V7_PIG Isoform 1 of Carboxypeptidase N catalytic chain OS=Sus scrofa OX=9823 GN=CPN1 PE=1 SV=1 CANONICAL=F1S8V7-1" }, "locus": { "chromosome": "14", "start_pos": 111213137, "end_pos": 111182910, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011536.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011536.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011235.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011235.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 401, "start_aa": "Thr", "end_pos": 401, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr401", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZZ2", "url": "https://www.uniprot.org/uniprotkb/A0A287AZZ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157984", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157984", "resource": "KEGG Pathway" }, { "id": "R-SSC-977606", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "resource": "Reactome", "description": "Regulation of Complement cascade" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C7M0-1", "protein_name": "Carboxypeptidase N catalytic chain", "gene_name": "CPN1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGWLRPLAGTLLLLEVAAAVSFLHHRYEEMVRALFRVQSECPYVTRIYSIGRSVEGRHLYVLEFSDYPGIHEPLEPEFKYVGNMHGNEVLGRELLLQLSEFLCEEYRRGSERVTRLLHDTRIHIMPSMNPDGYEVAAKQGPDGIGYLTGRNNANGVDLNRNFPDLNTFMYYSGEISGPNHHIPLPDNWKSQVEPETLAVIQWIGSYNFVLSANLHGGAVVANYPYDKSQDQRFRSHRRTANTPTPDDKLFQKLAKTYSYAHGWMHRGWNCGDYFVDGITNGASWYSLSKGMQDFNYLYTNCFEITLELSCNKFPPKEDLERQWMANREALVAFIEEIHQGIKGMVTDKNNNGIAGAVISVQGISHDVTSGEMGDYFRLLLPGTYTVTASAEGYQPQTVTATVGPAAPSLVHFQLKQDMVKKAPERKASGTRTNNKTLQKKVVPRSVRRGTQR", "length": 453 }, "evidence": [ { "id": "F1S8V7", "url": "https://omabrowser.org/oma/group/F1S8V7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G5E5V0-1", "protein_name": "Carboxypeptidase N catalytic chain", "gene_name": "CPN1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSDLVSIFLHLLLFKLVAPVTFRHHRYDDLVRMLYKVHNECPHITRVYSIGRSVKGRHLYVLEFSDYPGIHEPLEPEVKYVGNMHGNEVLGRELLLQLSEFLCEEFRNRNQRIVRLVEDTRIHIMPSMNPDGYEVAAAAQERDISGYLVGRNNANGVDLNRNFPDLNTYIYYNEKNGGPNHHLPLPDNWKSQVEPETQAVIQWIRSFNFVLSANLHGGAVVANYPYDKSLGHRVRGFRRTANTPTPDDKLFQKLAKIYSYAHGWMHQGWNCGDYFPDGITNGASWYSLSKGMQDFNYLHTNCFEITLELSCDKFPLQGELQREWLGNREALIQFLEQVHQGIKGMVRDENYNNLADAVISVGGINHDVTSGAHGDYFRLLLPGTYTVTATAPGFDPETVSVTVGPAEPKLVNFQLKRSTPQAAPKRRIPNSGHRGRVLPKKVQPRAARKKETMMKQPQRGPA", "length": 462 }, "evidence": [ { "id": "F1S8V7", "url": "https://omabrowser.org/oma/group/F1S8V7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P15169-1", "protein_name": "Carboxypeptidase N catalytic chain", "gene_name": "CPN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSDLLSVFLHLLLLFKLVAPVTFRHHRYDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFSDHPGIHEPLEPEVKYVGNMHGNEALGRELMLQLSEFLCEEFRNRNQRIVQLIQDTRIHILPSMNPDGYEVAAAQGPNKPGYLVGRNNANGVDLNRNFPDLNTYIYYNEKYGGPNHHLPLPDNWKSQVEPETRAVIRWMHSFNFVLSANLHGGAVVANYPYDKSFEHRVRGVRRTASTPTPDDKLFQKLAKVYSYAHGWMFQGWNCGDYFPDGITNGASWYSLSKGMQDFNYLHTNCFEITLELSCDKFPPEEELQREWLGNREALIQFLEQVHQGIKGMVLDENYNNLANAVISVSGINHDVTSGDHGDYFRLLLPGIYTVSATAPGYDPETVTVTVGPAEPTLVNFHLKRSIPQVSPVRRAPSRRHGVRAKVQPQARKKEMEMRQLQRGPA", "length": 458 }, "evidence": [ { "id": "F1S8V7", "url": "https://omabrowser.org/oma/group/F1S8V7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54I77-1", "protein_name": "Peptidase M14 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKILTIYLLIIYFIVFIKNVVNCEIEQLMINGCEKFDESGDVCIKLKKLNFYTINSVGQPLTRDLLDYVENQLSINQDDNKLILTSENQFNVYLNEDQFKFLNEKKKEFGLEIKLNLVKNLEEILGTTIQTEMDKLKRITVLLESMRYNYNKGGSSTAYGQSPFLVRSESGIIDYNHYLNYNQLTDFMKKISNYYPNQSKLYSIGKSSLGRELWAIDLSNFQLKKNNNNKFKQNVKLVGNMHGDEVVGRQMLIYLIDHLLYRNSKVDKEYVELFENLIISIVPSMNPDGYELGQRENANHFDLNRNFPDKFVGSSSELYKKIQPEVQSIIDWSKERNFVMSANLHGGSLVANYPFDSTRDSDNGYGFGIQYPTTDDVVFRRMALTYSLNHAKMYQSKEFLGGIVNGAKWYTLRGGMQDYNYDFTNGMEITLELSSEKIPKSIELNRFWNDNRNALVKFISLPLSMSIFGRVTNNNNENLFAQIQISNIDKIVTTDPSNGYYSRLLDDGFYNVTVSSFGYKSITKSILLNPNSRENIDFILDFEN", "length": 544 }, "evidence": [ { "id": "F1S8V7", "url": "https://omabrowser.org/oma/group/F1S8V7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9EQV8-1", "protein_name": "Carboxypeptidase N catalytic chain", "gene_name": "Cpn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPDLPSAFLPLLLLSKFVTPVTFRHHRYDDLVRTLYKVHNQCPDITRLYNIGRSVKGRYLYVLEFSDYPGTHEPLEPEVKYVGNMHGNEVLGRELLLQLSEFLCEEFRNRNQRILRLIQDTRIHILPSMNPDGYEVAAAQGPNTSGYLVGRNNANGVDLNRNFPDLNTYFYYNSKYGGPNHHLPLPDNWKSQVEPETRAVIQWIRSLNFVLSANMHGGAVVANYPYDKSLEHRFRSPHRTSNSPTPDDELFQTLAKVYSYAHGWMHQGWNCGDYFPDGITNGASWYSLSKGMQDFNYLHTNCFEITLELSCNKFPRQEELQREWLGNREALIQFLEQVHQGIKGMVLDENYNNLTGAVISVTGINHDVTSGEHGDYFRLLLPGTYSVTAKASGYEPKTVTVTVGPAGPTLVDFQLKRSTTQVHPVQKAPGRGQGSRAKQPRTSRKKDQAAKRHRGPA", "length": 457 }, "evidence": [ { "id": "F1S8V7", "url": "https://omabrowser.org/oma/group/F1S8V7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9JJN5-1", "protein_name": "Carboxypeptidase N catalytic chain", "gene_name": "Cpn1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPDLPSAFLPLLLLSKFVTPVTFRHHRYDDLVRTLYKVHNQCPDITRLYNIGRSVKGRYLYVLEFSDYPGIHEPLEPEVKYVGNMHGNEVLGRELLLQLSEFLCEEFRNRNQRILRLIQDTRIHILPSMNPDGYEVAAAQGPNMSGYLVGRNNANGVDLNRNFPDLNTYFYYNSKNGGPNHHLPLPDNWKSQVEPETRAVIQWIRSLNFVLSANMHGGAVVANYPYDKSLEHRFRGPHRTSNSPTPDDELFQTLAKVYSYAHGWMHQGWNCGDYFPDGITNGASWYSLSKGMQDFNYLHTNCFEITLELSCDKFPRQEELQREWLGNREALIQFLEQVHQGIKGMVLDENSNNLTGAVISVTGINHDVTSGEHGDYFRLLLPGTYSVTAKAPGYDPKTVTVTVGPAGPTVVDFQLKRSSSQVYPVQRAPGRGQGGRAKQPRTSRKKDPATKRHRGPA", "length": 457 }, "evidence": [ { "id": "F1S8V7", "url": "https://omabrowser.org/oma/group/F1S8V7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9M9H7-1", "protein_name": "Carboxypeptidase SOL1", "gene_name": "SOL1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSKLRFFQSLLISTVICFFLPSINARGGHSDHIHPGDGNYSFHGIVRHLFAQEEPTPSLELTRGYMTNDDLEKAMKDFTKRCSKISRLYSIGKSVNGFPLWVIEISDRPGEIEAEPAFKYIGNVHGDEPVGRELLLRLANWICDNYKKDPLAQMIVENVHLHIMPSLNPDGFSIRKRNNANNVDLNRDFPDQFFPFNDDLNLRQPETKAIMTWLRDIRFTASATLHGGALVANFPWDGTEDKRKYYYACPDDETFRFLARIYSKSHRNMSLSKEFEEGITNGASWYPIYGGMQDWNYIYGGCFELTLEISDNKWPKASELSTIWDYNRKSMLNLVASLVKTGVHGRIFSLDKGKPLPGLVVVKGINYTVKAHQTYADYHRLLVPGQKYEVTASSPGYKSKTTTVWLGENAVTADFILIPETSSRGNQLRSSCDCSCKSCGQPLLTQFFTETNNGITLTLFVVVVFLCFLLQRRVRFNLWKQRQSSRRSITV", "length": 491 }, "evidence": [ { "id": "F1S8V7", "url": "https://omabrowser.org/oma/group/F1S8V7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1S8V7", "url": "https://www.uniprot.org/uniprotkb/F1S8V7" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1S8V7", "url": "https://www.uniprot.org/uniprotkb/F1S8V7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1S8V7", "url": "https://www.uniprot.org/uniprotkb/F1S8V7" } ], "pmid": "" }, { "name": "protein processing", "id": "GO:0016485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016485", "evidence": [ { "database": "UniProtKB", "id": "F1S8V7", "url": "https://www.uniprot.org/uniprotkb/F1S8V7" } ], "pmid": "" }, { "name": "peptide metabolic process", "id": "GO:0006518", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006518", "evidence": [ { "database": "UniProtKB", "id": "F1S8V7", "url": "https://www.uniprot.org/uniprotkb/F1S8V7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1S8V7", "url": "https://www.uniprot.org/uniprotkb/F1S8V7" } ], "pmid": "" }, { "name": "metallocarboxypeptidase activity", "id": "GO:0004181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004181", "evidence": [ { "database": "UniProtKB", "id": "F1S8V7", "url": "https://www.uniprot.org/uniprotkb/F1S8V7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-8852809", "name": "CPN, CPB2 cleave C3a, C5a", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "extracellular region", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8852809", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852809" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S8V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8V7" }, { "id": "PS52035", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52035" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase M14", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 337, "start_aa": "Arg", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 401 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 142, "end_pos": 144 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SBS2-1", "uniprot_ac": "F1SBS2", "uniprot_id": "F1SBS2_PIG", "mass": { "chemical_mass": 24305.0, "monoisotopic_mass": 24305.0 }, "refseq": {}, "gene_names": [ { "name": "SIKE1", "type": "recommended", "evidence": [ { "id": "F1SBS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBS2" } ] } ], "protein_names": [ { "name": "Suppressor of IKBKE 1", "type": "recommended", "evidence": [ { "id": "F1SBS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBS2/entry#names_and_taxonomy" } ] }, { "name": "Suppressor of IKK-epsilon", "type": "synonym", "evidence": [ { "id": "F1SBS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBS2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Physiological suppressor of IKK-epsilon and TBK1 that plays an inhibitory role in virus- and TLR3-triggered IRF3. Inhibits TLR3-mediated activation of interferon-stimulated response elements (ISRE) and the IFN-beta promoter. May act by disrupting the interactions of IKBKE or TBK1 with TICAM1/TRIF, IRF3 and RIGI. Does not inhibit NF-kappa-B activation pathways. Associates with the striatin-interacting phosphatase and kinase (STRIPAK) core complex, forming the extended (SIKE1:SLMAP)STRIPAK complex. The (SIKE1:SLMAP)STRIPAK complex dephosphorylates STK3 leading to the inhibition of Hippo signaling and the control of cell growth.", "evidence": [ { "database": "UniProtKB", "id": "F1SBS2", "url": "https://www.uniprot.org/uniprotkb/F1SBS2#function" }, { "database": "UniProtKB", "id": "ARBA00046176", "url": "https://www.uniprot.org/uniprotkb/ARBA00046176#function" }, { "database": "UniProtKB", "id": "A0A287B0M9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0M9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBS2", "url": "https://www.uniprot.org/uniprotkb/F1SBS2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SIKE1", "url": "https://www.uniprot.org/uniprotkb/F1SBS2", "locus": { "chromosome": "4", "start_pos": 105789389, "end_pos": 105779814, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006751", "url": "https://www.ensembl.org/id/ENSSSCG00000006751" } ] } } ], "crossref": [ { "id": "F1SBS2", "url": "https://alphafold.ebi.ac.uk/entry/F1SBS2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006751", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006751", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008555", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008555", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12186", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12186", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12186:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12186:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05769", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05769", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287B0M9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0M9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B0M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0M9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBS2", "url": "https://www.uniprot.org/uniprotkb/F1SBS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBS2-1", "url": "https://www.uniprot.org/uniprotkb/F1SBS2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQVRQRYQEDASDIKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLELENKELRELLSISSESLQVRKDNSMDTTSQAIK", "length": 211, "header": "tr|F1SBS2-1|F1SBS2_PIG Isoform 1 of Suppressor of IKBKE 1 OS=Sus scrofa OX=9823 GN=SIKE1 PE=1 SV=2 CANONICAL=F1SBS2-1" }, "isoforms": [ { "isoform_ac": "A0A287B0M9-1", "url": "https://www.uniprot.org/uniprotkb/F1SBS2/entry#A0A287B0M9-1", "sequence": { "sequence": "MRMLPWNTASCVFSCICGCLVYGAISMSLFVQYQEDASDIKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLELENKELRELLSISSESLQVRKDNSMDTTSQAIK", "length": 186, "header": "tr|A0A287B0M9-1|F1SBS2_PIG Computationally mapped isoform of Suppressor of IKBKE 1 OS=Sus scrofa OX=9823 GN=SIKE1 PE=1 SV=1 CANONICAL=F1SBS2-1" }, "locus": { "chromosome": "4", "start_pos": 105786348, "end_pos": 105780184, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045016.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045016.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049667.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049667.1" } ] } }, { "isoform_ac": "F1SBS2-1", "url": "https://www.uniprot.org/uniprotkb/F1SBS2/entry#F1SBS2-1", "sequence": { "sequence": "MSCTIEKILTDAKTLLERLREHDAAAESLVDQSAALHRRVAAMREAGTALPDQVRQRYQEDASDIKDMSKYKPHILLSQENTQIRDLQQENRELWVSLEEHQDALELIMSKYRKQMLQLMVAKKAVDAEPVLKAHQSHSAEIESQIDRICEMGEVMRKAVQMDDDQFCKIQEKLAQLELENKELRELLSISSESLQVRKDNSMDTTSQAIK", "length": 211, "header": "tr|F1SBS2-1|F1SBS2_PIG Isoform 1 of Suppressor of IKBKE 1 OS=Sus scrofa OX=9823 GN=SIKE1 PE=1 SV=2 CANONICAL=F1SBS2-1" }, "locus": { "chromosome": "4", "start_pos": 105786348, "end_pos": 105779888, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007396.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007396.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007201.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007201.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0M9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0M9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "F1SBS2", "url": "https://www.uniprot.org/uniprotkb/F1SBS2" } ], "pmid": "" }, { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "F1SBS2", "url": "https://www.uniprot.org/uniprotkb/F1SBS2" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "F1SBS2", "url": "https://www.uniprot.org/uniprotkb/F1SBS2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of hippo signaling", "id": "GO:0035331", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035331", "evidence": [ { "database": "UniProtKB", "id": "F1SBS2", "url": "https://www.uniprot.org/uniprotkb/F1SBS2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "FAR/SIN/STRIPAK complex", "id": "GO:0090443", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090443", "evidence": [ { "database": "UniProtKB", "id": "F1SBS2", "url": "https://www.uniprot.org/uniprotkb/F1SBS2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBS2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 211, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBS2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBS2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SE30-1", "uniprot_ac": "F1SE30", "uniprot_id": "F1SE30_PIG", "mass": { "chemical_mass": 204468.0, "monoisotopic_mass": 204468.0 }, "refseq": {}, "gene_names": [ { "name": "ANK1", "type": "recommended", "evidence": [ { "id": "F1SE30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE30" } ] } ], "protein_names": [ { "name": "Ankyrin-1", "type": "recommended", "evidence": [ { "id": "F1SE30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE30/entry#names_and_taxonomy" } ] }, { "name": "Erythrocyte ankyrin", "type": "synonym", "evidence": [ { "id": "F1SE30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE30/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the ankyrin-1 complex, a multiprotein complex involved in the stability and shape of the erythrocyte membrane. Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BEP2", "url": "https://www.uniprot.org/uniprotkb/A0A287BEP2#function" }, { "database": "UniProtKB", "id": "ARBA00058177", "url": "https://www.uniprot.org/uniprotkb/ARBA00058177#function" }, { "database": "UniProtKB", "id": "F1SE30", "url": "https://www.uniprot.org/uniprotkb/F1SE30#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SE30", "url": "https://www.uniprot.org/uniprotkb/F1SE30" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANK1", "url": "https://www.uniprot.org/uniprotkb/F1SE30", "locus": { "chromosome": "17", 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"https://www.ebi.ac.uk/interpro/entry/IPR011029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040745", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040745", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051165", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051165", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24123", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24123", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24123:SF71", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24123:SF71", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00531", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00531", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00791", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00791", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17809", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17809", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-447043", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-447043", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6807878", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BEP2", "url": "https://www.uniprot.org/uniprotkb/A0A287BEP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEP2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SE30", "url": "https://www.uniprot.org/uniprotkb/F1SE30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SE30-1", "url": "https://www.uniprot.org/uniprotkb/F1SE30-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQAAKQLKKIKDIEAQALQEQKEKEESNRKRRNRSRDRKKKADAATSFLRAARSGNLDKALDHLRNGVDINTCNQNGLNGLHLASKEGHVKMVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHLRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRDASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETALALLEKGASQACMTKKGFTPLHVAAKYGKVRVAELLLEHDAHPNAAGKNGLTPLHVAVHHNHLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPLAIAKRLGYISVTDVLKVVTDETSVVLISDKHRMSFPETVDEILDVSEDEGTAHISIMGEELVGLKAEKDSRDVDEEKELLDFVPKLDQVVESPAIPRIPCVTPETVVIRSEEPEQALKEYDEDSLIPSSPATETSDNISPVASPVHTGFLVSFMVDARGGSMRGSRHNGLRVVVPPRTCAAPTRITCRLVKPQKLTTPPPLAEEEGLASRVIALGPTGVQFLSPVIVEIPHFASYGRGDRELVVLRSENGSVWKEHKSRYGESYLDQILNGLDEELGSLEELEKKRVCRIITTDFPLYFVIMSRLCQDYDTIGPEGGFLKSKLVPLVQATFPENAVTKRVKLALQAQPVPDDLVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTDNPRDSGEGDTTSLRLLCSVIGGTDQAQWEDITGTTKLVYANECATFTTNVSARFWLSDCPRTAEAVNFATLLYKELTAVPYMAKFVIFAKMNDPREGRLRCYCMTDDKVDKTLEQHENFVEVARSRDIEVLEGMPLFAELSGNLVPVKKAAQQRSFLFQSFRENRLAIPVKVRDSSREPGGSLLFLRKAMKYEDTQHILCHLNITMPPCTKGSGAEDRRRTLTPLALRYSILSESLGSLSGTEGPDKMAVIAEHLGLSWAELARELQFSVEDINRIRVENPNSLLEQSAALLNLWLTREGKDAKMDNLYAALRNIERGEIVNMLENSGRQSRSLKPYSSSPSQMNGYSSLQDELLSPASLHYALPSPLRADQYWNEVAVIDAIPAGTEHDAMLEMSDMQVWSAGLTPSLVTAEDSSLECSKAEDSDATGHEWKLEGALSEGPQGPTLGSLDLVEDDTVDSDATNGLIDLLDQEEGQRSEEKLPGHERQEDSPGAGQDSENEVSLVSGQQRVQARITESSSVSRVTESSRDRLQAWDAEGSIVSYLQEVTQGSWPEERTVHTIRDLEPSGSRESEEVLGSAAEHLEAGREQRLRGSQEWMPEADSTFSFQGNEFLQNIPGEQVSEEHYTDEQGNVVTRKVIRKVVRQIDPSGADDTQEHEEDHTSTPNP", "length": 1865, "header": "tr|F1SE30-1|F1SE30_PIG Isoform 1 of Ankyrin-1 OS=Sus scrofa OX=9823 GN=ANK1 PE=1 SV=6 CANONICAL=F1SE30-1" }, "isoforms": [ { "isoform_ac": "A0A287BEP2-1", "url": "https://www.uniprot.org/uniprotkb/F1SE30/entry#A0A287BEP2-1", "sequence": { "sequence": "MAARQGRSGPDAAADAATSFLRAARSGNLDKALDHLRNGVDINTCNQNGLNGLHLASKEGHVKMVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHLRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRDASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETALALLEKGASQACMTKKGFTPLHVAAKYGKVRVAELLLEHDAHPNAAGKNGLTPLHVAVHHNHLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPLAIAKRLGYISVTDVLKVVTDETSVVLISDKHRMSFPETVDEILDVSEDEGTAHISIMGEELVGLKAEKDSRDVDEEKELLDFVPKLDQVVESPAIPRIPCVTPETVVIRSEEPEQALKEYDEDSLIPSSPATETSDNISPVASPVHTGFLVSFMVDARGGSMRGSRHNGLRVVVPPRTCAAPTRITCRLVKPQKLTTPPPLAEEEGLASRVIALGPTGVQFLSPVIVEIPHFASYGRGDRELVVLRSENGSVWKEHKSRYGESYLDQILNGLDEELGSLEELEKKRVCRIITTDFPLYFVIMSRLCQDYDTIGPEGGFLKSKLVPLVQATFPENAVTKRVKLALQAQPVPDDLVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTDNPRDSGEGDTTSLRLLCSVIGGTDQAQWEDITGTTKLVYANECATFTTNVSARFWLSDCPRTAEAVNFATLLYKELTAVPYMAKFVIFAKMNDPREGRLRCYCMTDDKVDKTLEQHENFVEVARSRDIEVLEGMPLFAELSGNLVPVKKAAQQRSFLFQSFRENRLAIPVKVRDSSREPGGSLLFLRKAMKYEDTQHILCHLNITMPPCTKGSGAEDRRRTLTPLALRYSILSESLGSLSGTEGPDKMAVIAEHLGLSWAELARELQFSVEDINRIRVENPNSLLEQSAALLNLWLTREGKDAKMDNLYAALRNIERGEIVNMLENSGRQSRSLKPYSSSPSQMNGYSSLQDELLSPASLHYALPSPLRADQYWNEVAVIDAIPAGTEHDAMLEMSDMQVWSAGLTPSLVTAEDSSLECSKAEDSDATGHEWKLEGALSEGPQGPTLGSLDLVEDDTVDSDATNGLIDLLDQEEGQRSEEKLPGHERQEDSPGAGQDSENEVSLVSGQQRVQARITESSSVSRVTESSRDRLQAWDAEGSIVSYLQEVTQGSWPEERTVHTIRDLEPSGSRESEEVLGSAAEHLEAGREQRLRGSQEWMPEADSTFSFQGNEFLQNIPGEQVSEEHYTDEQGNVVTRKVIRKVVRQIDPSGADDTQEHEEVELRGNSLHPDLIEGRKGAQIVKRASLKRGKQ", "length": 1860, "header": "tr|A0A287BEP2-1|F1SE30_PIG Computationally mapped isoform of Ankyrin-1 OS=Sus scrofa OX=9823 GN=ANK1 PE=1 SV=3 CANONICAL=F1SE30-1" }, "locus": { "chromosome": "17", "start_pos": 10864117, "end_pos": 10759795, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065446.4", "url": "https://www.ensembl.org/id/ENSSSCT00000065446.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054585.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054585.3" } ] } }, { "isoform_ac": "F1SE30-1", "url": "https://www.uniprot.org/uniprotkb/F1SE30/entry#F1SE30-1", "sequence": { "sequence": "MAQAAKQLKKIKDIEAQALQEQKEKEESNRKRRNRSRDRKKKADAATSFLRAARSGNLDKALDHLRNGVDINTCNQNGLNGLHLASKEGHVKMVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHLRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRDASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETALALLEKGASQACMTKKGFTPLHVAAKYGKVRVAELLLEHDAHPNAAGKNGLTPLHVAVHHNHLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPLAIAKRLGYISVTDVLKVVTDETSVVLISDKHRMSFPETVDEILDVSEDEGTAHISIMGEELVGLKAEKDSRDVDEEKELLDFVPKLDQVVESPAIPRIPCVTPETVVIRSEEPEQALKEYDEDSLIPSSPATETSDNISPVASPVHTGFLVSFMVDARGGSMRGSRHNGLRVVVPPRTCAAPTRITCRLVKPQKLTTPPPLAEEEGLASRVIALGPTGVQFLSPVIVEIPHFASYGRGDRELVVLRSENGSVWKEHKSRYGESYLDQILNGLDEELGSLEELEKKRVCRIITTDFPLYFVIMSRLCQDYDTIGPEGGFLKSKLVPLVQATFPENAVTKRVKLALQAQPVPDDLVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTDNPRDSGEGDTTSLRLLCSVIGGTDQAQWEDITGTTKLVYANECATFTTNVSARFWLSDCPRTAEAVNFATLLYKELTAVPYMAKFVIFAKMNDPREGRLRCYCMTDDKVDKTLEQHENFVEVARSRDIEVLEGMPLFAELSGNLVPVKKAAQQRSFLFQSFRENRLAIPVKVRDSSREPGGSLLFLRKAMKYEDTQHILCHLNITMPPCTKGSGAEDRRRTLTPLALRYSILSESLGSLSGTEGPDKMAVIAEHLGLSWAELARELQFSVEDINRIRVENPNSLLEQSAALLNLWLTREGKDAKMDNLYAALRNIERGEIVNMLENSGRQSRSLKPYSSSPSQMNGYSSLQDELLSPASLHYALPSPLRADQYWNEVAVIDAIPAGTEHDAMLEMSDMQVWSAGLTPSLVTAEDSSLECSKAEDSDATGHEWKLEGALSEGPQGPTLGSLDLVEDDTVDSDATNGLIDLLDQEEGQRSEEKLPGHERQEDSPGAGQDSENEVSLVSGQQRVQARITESSSVSRVTESSRDRLQAWDAEGSIVSYLQEVTQGSWPEERTVHTIRDLEPSGSRESEEVLGSAAEHLEAGREQRLRGSQEWMPEADSTFSFQGNEFLQNIPGEQVSEEHYTDEQGNVVTRKVIRKVVRQIDPSGADDTQEHEEDHTSTPNP", "length": 1865, "header": "tr|F1SE30-1|F1SE30_PIG Isoform 1 of Ankyrin-1 OS=Sus scrofa OX=9823 GN=ANK1 PE=1 SV=6 CANONICAL=F1SE30-1" }, "locus": { "chromosome": "17", "start_pos": 10984985, "end_pos": 10752688, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007691.6", "url": "https://www.ensembl.org/id/ENSSSCT00000007691.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007484.6", "url": "https://www.ensembl.org/id/ENSSSCP00000007484.6" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BEP2", "url": "https://www.uniprot.org/uniprotkb/A0A287BEP2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-447043", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-447043", "resource": "Reactome", "description": "Neurofascin interactions" }, { "id": "R-SSC-6807878", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "resource": "Reactome", "description": "COPI-mediated anterograde transport" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", 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"MEDGVLKEGFLVKRGHIVHNWKVRWFILRQNTLLYYKLEAGRKVNPPKGRILLDGCTITCPCLEYENRPLLIKLKTQTSTEYFLEACSREERDAWAFEITGAIHAGQPGKVQQLHILKNSFKLPPHISLHRIIDKMHDSSSGIRPSPNMEQGSTYKKTFIGSSLVDWLISNSFAASRLEAVTLASMLMEENFLRPVGARSTGAIRSGDLVEQFLDDSTALYTFAESCKKKISPKEEISLSTVELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERSEWIEAIKQLT", "length": 353, "header": "tr|F1SA39-1|F1SA39_PIG Isoform 1 of Pleckstrin-2 OS=Sus scrofa OX=9823 GN=PLEK2 PE=4 SV=1 CANONICAL=F1SA39-1" }, "locus": { "chromosome": "7", "start_pos": 91132775, "end_pos": 91110745, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002551.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002551.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002487.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002487.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHZ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154251", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154251", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HJ10-1", "protein_name": "Pleckstrin-2", "gene_name": "Plek2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEDGVLKEGFLVKRGHIVHNWKARWFILRQNTLLYYKLEGGRRVTPPKGRILLDGCTITCPCLEYENRPLLIKLKTRTSTEYFLEACSREERDSWAFEITGAIHSGQPGKVQQLHIQKNSFKLPPHISLHRIVDKMHDSSSGIRPCPNMEQGSTYKKTFLGSSLVDWLISSSFAASRLEGVTLASMLMEENFLRPVGVRSMGAIRAGDLVEQFLDDSTALYTFAESYKKKVSSKEEISLSTMELSGVVVKQGYLSKQGHKRKNWKVRRFVLRRDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLT", "length": 353 }, "evidence": [ { "id": "F1SA39", "url": "https://omabrowser.org/oma/group/F1SA39/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D4ACD5-1", "protein_name": "Pleckstrin-2", "gene_name": "Plek2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDGVLKEGFLVKRGHIVHNWKARWFILRQNTLLYYKLEGGRRVTPPKGRIVLDGCTITCPCLEYENRPLLIKLKTRTSTEYFLEACSREERDAWAFEITGAIHAGQPGKIQQLHILKNSFKLSPNISLHRIVDKMHDTSSGLRPSPNMEQGSTYKKTFLGSSLVDWLISSNFAASRLEAVTLASMLMEENFLRPVGVRSMDAIRSGDLAEQFLDDSTALYTFAESYKKKVSSKEEISLSTMELSGIVVKQGYLSKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEDNRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASNKAERAEWIEAIKKLT", "length": 353 }, "evidence": [ { "id": "F1SA39", "url": "https://omabrowser.org/oma/group/F1SA39/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BT20-1", "protein_name": "Pleckstrin-2", "gene_name": "PLEK2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEETTGVLKEGFLVKRGHIVHNWKVRWFVLLQDKLLYYKLEGGKKESSPKGRILLDGCTITCPCLEYENRPLLIKLKTKTNTDYFLECCSREERDSWALDITGAIHAGHPVQVQELHRMKNSFKLLENISLHHIVDKMRDSSTGIKLTLNVEQGNRYKETFTGSALVDWLISNSFAVSRFEAVTLASMLMEENFTKPVGARSTGATRYSDLSEQFLDDSTALYMFAETSKKMLSSKEELQFNISELSGTIVKQGYLVKQGHKRKNWKVRKFVLRADPAFLHYYDPTKEENRPVGGFSLRGCLVSALEDNGVPAGVKGNVQGNLFKIITKKDIHYYIQASSKAERTQWIEAIKPLT", "length": 355 }, "evidence": [ { "id": "F1SA39", "url": "https://omabrowser.org/oma/group/F1SA39/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9NYT0-1", "protein_name": "Pleckstrin-2", "gene_name": "PLEK2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDGVLKEGFLVKRGHIVHNWKARWFILRQNTLVYYKLEGGRRVTPPKGRILLDGCTITCPCLEYENRPLLIKLKTQTSTEYFLEACSREERDAWAFEITGAIHAGQPGKVQQLHSLRNSFKLPPHISLHRIVDKMHDSNTGIRSSPNMEQGSTYKKTFLGSSLVDWLISNSFTASRLEAVTLASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDSTALYTFAESYKKKISPKEEISLSTVELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLT", "length": 353 }, "evidence": [ { "id": "F1SA39", "url": "https://omabrowser.org/oma/group/F1SA39/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9WV52-1", "protein_name": "Pleckstrin-2", "gene_name": "Plek2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDGVLKEGFLVKRGHIVHNWKARWFILRQNTLLYYKLEGGRRVTPPKGRIVLDGCTITCPCLEYENRPLLIKLKTRTSTEYFLEACSREERDSWAFEITGAIHAGQPGKIQQLHILKNSFKLPPHISLHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNFAASRLEAVTLASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDSTALYTFAESYKKKVSSKEEISLSTMELSGTVVKQGYLSKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLT", "length": 353 }, "evidence": [ { "id": "F1SA39", "url": "https://omabrowser.org/oma/group/F1SA39/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F1SA39", "url": "https://www.uniprot.org/uniprotkb/F1SA39" } ], "pmid": "" }, { "name": "actin cytoskeleton organization", "id": "GO:0030036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030036", "evidence": [ { "database": "UniProtKB", "id": "F1SA39", "url": "https://www.uniprot.org/uniprotkb/F1SA39" } ], "pmid": "" }, { "name": "positive regulation of plasma membrane bounded cell projection assembly", "id": "GO:0120034", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120034", "evidence": [ { "database": "UniProtKB", "id": "F1SA39", "url": "https://www.uniprot.org/uniprotkb/F1SA39" } ], "pmid": "" }, { "name": "erythrocyte enucleation", "id": "GO:0043131", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043131", "evidence": [ { "database": "UniProtKB", "id": "F1SA39", "url": "https://www.uniprot.org/uniprotkb/F1SA39" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1SA39", "url": "https://www.uniprot.org/uniprotkb/F1SA39" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SA39", "url": "https://www.uniprot.org/uniprotkb/F1SA39" } ], "pmid": "" }, { "name": "lamellipodium membrane", "id": "GO:0031258", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031258", "evidence": [ { "database": "UniProtKB", "id": "F1SA39", "url": "https://www.uniprot.org/uniprotkb/F1SA39" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "phosphatidylinositol-3,4-bisphosphate binding", "id": "GO:0043325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043325", "evidence": [ { "database": "UniProtKB", "id": "F1SA39", "url": "https://www.uniprot.org/uniprotkb/F1SA39" } ], "pmid": "" }, { "name": "phosphatidylinositol-3,5-bisphosphate binding", "id": "GO:0080025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0080025", "evidence": [ { "database": "UniProtKB", "id": "F1SA39", "url": "https://www.uniprot.org/uniprotkb/F1SA39" } ], "pmid": "" }, { "name": "phosphatidylinositol-3-phosphate binding", "id": "GO:0032266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032266", "evidence": [ { "database": "UniProtKB", "id": "F1SA39", "url": "https://www.uniprot.org/uniprotkb/F1SA39" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SA39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA39" }, { "id": "PS50186", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50186" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DEP", "eco_id": "ECO_0000259", "start_pos": 139, "end_pos": 225, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SA39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA39" }, { 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[], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BLX0", "url": "https://www.uniprot.org/uniprotkb/A0A287BLX0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513413", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513413", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YWZ2-1", "protein_name": "Transmembrane protein 129", "gene_name": "TMEM129", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MESPAVTFTLAYLVFAVCFVFPPDEVRSAGLTVQSLLAAWLGSEDAAFVQYHLRRSTGTLLAHSLLPLGYYFGMCFAAPEKHLCFFYLASKEWKTFFFFAVLLPAVSSTLAYYWSRKGWNNHPLARTLAVYALPQSGWRAVASSINTEFRRIDKFATGAPGARVIVTDTWVIKVTTYCLHVAQQQDIHLTVTDSRQHELTPDSNMPVQFLTIRVASVNPYVKAFDIRLNSAEYGELREKLRAPISNAANVVIHQSLSDLFLETFTSLVEMNQTYSVPSTQELEPCIGCMQTIANIKLIKNCQEPNEGECQQCYCRPMWCLTCMGKWFASRQDQQHPETWLSSHVPCPTCRAKFCILDVCIIR", "length": 362 }, "evidence": [ { "id": "F1S8S5", "url": "https://omabrowser.org/oma/group/F1S8S5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AVI4-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDSPEVTFTLAYLVFAVCFVFTPNEFHAAGLTVQNLLSGWLGSEDAAFVPFHLRRTAATLLCHSLLPLGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWACHPLARTLALYALPQSGWQAVASSVNTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVHVAQQQDVHLTVTESRQHELSPDSNLPVQLLTIRVASTNPAVQAFDIWLNSTEYGELCEKLRAPIRRAAHVVIHQSLGDLFLETFASLVEVNPAYSVPSSQELEACIGCMQTRASVKLVKTCQEAATGECQQCYCRPMWCLTCMGKWFASRQDPLRPDTWLASRVPCPTCRARFCILDVCTVR", "length": 362 }, "evidence": [ { "id": "F1S8S5", "url": "https://omabrowser.org/oma/group/F1S8S5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "G3HK79-1", "protein_name": "E3 ubiquitin-protein ligase TM129 isoform X1", "gene_name": "Tmem129", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDSPEVTFTLAYLVFAMCFVFTPNEFYSAGLTVQNLLSGWLGSEDAAFVPYHLRRTSATLLSHSLLPLGYYMGMCFAASEKQLYSPGHASQAWQLFLLLAVTLPLVSSTLIYYWSWNKWTRHPLAQTLALYALPQSGWQAVASSINTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVHVAQQQDVHLTVTESRQHDLSPDSNLPVQLLTIRVASTNPAMQPFDIRLNSAEYGELCEKLHAPIRSAANVVIRQSLGDLFLETFASLVEVNPAYSVPSNQELEACTGCMQTQASVKLVKTCQEPAVGECQQCYCRPMWCLTCMGKWFASRQDPQRPDTWLASRVPCPTCRARFCILDVCCVR", "length": 362 }, "evidence": [ { "id": "F1S8S5", "url": "https://omabrowser.org/oma/group/F1S8S5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q08DK0-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "TMEM129", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDSPEVTFTLAYLVFAVCFVFTPTEFHSAGLTVQNLLSGWLGSEDAAFVPYHLRRTAATLLCHSLLPLGYYVGMCFAASEKQLYYPSQTPETWRAFLLLALMLPAIACTLIYYWSRDHWACHPLARTLALYALPRSGWQAVASSVNTEFRRIDKFATGVPGARVIVTDTWVMKVTTYRVHVAQQQDVRLTVTEAQQHELSPDSHLPVQLLTIRVASANPAVPAFHIRLNSTEYGELCEKLRAPIRSAANVVIHQSLGDLFLETFASLVEVNPAYSVPSSQDLEACIGCMQTQASVKLVKTCQEVAVGECQQCYCRPMWCLTCMGKWFASRQDPQRPDTWLASRVPCPTCRARFCVLDVCAVR", "length": 362 }, "evidence": [ { "id": "F1S8S5", "url": "https://omabrowser.org/oma/group/F1S8S5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8K304-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "Tmem129", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSPEVTFTLAYLVFAVCFVFTPNEFYSAGLTVQNLLSGWLGSEDAAFVPYHLRRTSATLLCHSLLPLGYYMGMCFAASEKQLYSPGQAPEAWQLFLLLAVTLPLLSCTLIYYWSWDRWTRHPLAQTLALYALPQSGWQAVASSINTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVHVAQQQDVHLTVTESRQHDLSPDSNLPVQLLTIRVASTSPGTQPFDIRLNSSEYGELCEKLHAPIRSAANVVIRQSLGDLFLETFASHVEVNPAYSVPSNQELEPCIGCMQTRASVKLVKTCQEPAVGECQQCYCRPMWCLTCMGKWFASRQDPQRPDTWLASRVPCPTCRARFCILDVCCVR", "length": 362 }, "evidence": [ { "id": "F1S8S5", "url": "https://omabrowser.org/oma/group/F1S8S5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VN16-1", "protein_name": "E3 ubiquitin-protein ligase TM129", "gene_name": "Dmel\\CG14646", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDESELLFNLFYILLCMVIIYPPEEFQRLGFTIEQLFARFLGEEYLDFVGYHQRRTSLNLFVHSCLPFSYFLIHRLKFSVFATQEPLEDFDLDPDFPMPQEAVAFKTLTWKTAQRFSVLAVLAMPALIFNWHQENWRRHPISKALSKYSITPGSYSAVASEIGIEFRQPEIYKKKLNSISSVIATQNWIIKTTMYNVHFAHQSNTSLSVAKAETYNISHQDQNDTLQMISIIVRPMRQGVSDFHIRINALEFRNLENRVRRPIAIPSNIQLHRNVIDRFVDVFKAQVAQNPIFPDDATTEKCFACMLNEPNTKIHKQCADFDRNGAPLANGACCSNCYCRPMWCVECLARWFAARQSDVDREVWLEQKCTCPMCRAKFCVLDVSYITTTVDATNSTQSQGTEEDTNDTT", "length": 409 }, "evidence": [ { "id": "F1S8S5", "url": "https://omabrowser.org/oma/group/F1S8S5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1S8S5", "url": "https://www.uniprot.org/uniprotkb/F1S8S5" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1S8S5", "url": "https://www.uniprot.org/uniprotkb/F1S8S5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1S8S5", "url": "https://www.uniprot.org/uniprotkb/F1S8S5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F1S8S5", "url": "https://www.uniprot.org/uniprotkb/F1S8S5" } ], "pmid": "" }, { "name": "protein polyubiquitination", "id": "GO:0000209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000209", "evidence": [ { "database": "UniProtKB", "id": "F1S8S5", "url": "https://www.uniprot.org/uniprotkb/F1S8S5" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "F1S8S5", "url": "https://www.uniprot.org/uniprotkb/F1S8S5" } ], "pmid": "" }, { "name": "retrograde protein transport, ER to cytosol", "id": "GO:0030970", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030970", "evidence": [ { "database": "UniProtKB", "id": "F1S8S5", "url": "https://www.uniprot.org/uniprotkb/F1S8S5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 229, "end_pos": 231 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SAH1-1", "uniprot_ac": "F1SAH1", "uniprot_id": "F1SAH1_PIG", "mass": { "chemical_mass": 107569.0, "monoisotopic_mass": 107569.0 }, "refseq": { "ac": "XP_005667461", "name": "NLR family member X1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667461" }, "gene_names": [ { "name": "NLRX1", "type": "recommended", "evidence": [ { "id": "F1SAH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAH1" } ] }, { "name": "NLRX1", "type": "synonym", "evidence": [ { "id": "XP_005667461", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667461" } ] } ], "protein_names": [ { "name": "NLR family member X1", "type": "recommended", "evidence": [ { "id": "F1SAH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAH1/entry#names_and_taxonomy" } ] }, { "name": "NLR family member X1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005667461", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667461" } ] } ], "function": [ { "annotation": "Participates in antiviral signaling. Acts as a negative regulator of MAVS-mediated antiviral responses, through the inhibition of the virus-induced RLH (RIG-like helicase)-MAVS interaction. Instead, promotes autophagy by interacting with TUFM and subsequently recruiting the autophagy-related proteins ATG5 and ATG12. Also regulates MAVS-dependent NLRP3 inflammasome activation to attenuate apoptosis. Has no inhibitory function on NF-kappa-B signaling pathway, but enhances NF-kappa-B and JUN N-terminal kinase dependent signaling through the production of reactive oxygen species. Regulates viral mediated-inflammation and energy metabolism in a sex-dependent manner. In females, prevents uncontrolled inflammation and energy metabolism and thus, may contribute to the sex differences observed in infectious and inflammatory diseases.", "evidence": [ { "database": "UniProtKB", "id": "F1SAH1", "url": "https://www.uniprot.org/uniprotkb/F1SAH1#function" }, { "database": "UniProtKB", "id": "ARBA00057410", "url": "https://www.uniprot.org/uniprotkb/ARBA00057410#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAH1", "url": "https://www.uniprot.org/uniprotkb/F1SAH1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NLRX1", "url": "https://www.uniprot.org/uniprotkb/F1SAH1", "locus": { "chromosome": "9", "start_pos": 46400983, "end_pos": 46384948, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000044952", "url": "https://www.ensembl.org/id/ENSSSCG00000044952" } ] } } ], "crossref": [ { "id": "ENSSSCG00000044952", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000044952", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518678", "url": "https://www.ncbi.nlm.nih.gov/gene/100518678", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048900", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048900", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051261", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051261", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SAH1", "url": "https://www.orthodb.org/?gene=F1SAH1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24106", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24106", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05729", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05729", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21402", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21402", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005667461", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667461", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BQG4", "url": "https://www.uniprot.org/uniprotkb/A0A287BQG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAH1", "url": "https://www.uniprot.org/uniprotkb/F1SAH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAH1-1", "url": "https://www.uniprot.org/uniprotkb/F1SAH1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRWGCHLPRASWGPGLGRVLQPADERIPFLIHWSWPLRGQRPLGPPRAFIRHHGSSADSDPPPGRHRLLFQGAAATEAIQQHRRNLAEWFSRLPREERQFGPTFALDTVHVDPVIRESTPDELLRPTAELALEHHPPSAGLPPLALSQLFDPDACGRRVQTVVLYGTVGTGKSTLVRKMVLDWCYGRLPAFELLIPFSCEDLSSLGPAPASLCQLVAQRYTPLKEILPLMASAGSRLLFVLHGLEHLNLNFQLADTGLCSDLEEPKAPAAIIVNLLRKYMLPEASILVTTRPSAIGRIPSKYVGRYGEICGFSDTNLQKLYFQLRLNQPDCEHGAGGAGVSATLAQHDNLVEMLSRNLEGHHQIAAACFLPSYCWLVCATLHFLHAPTPAGQTLTSIYTSFLRLNFSGEMLDSTDPSKLSLMAYAARTMGKLAYEGVSSRKTYFSEEDVRGCLEAGIKTEEEFQLLHVFRRDALRFFLAPCVEPGHPGTFVFTVPAMQEYLAALYIVLGLRKTTLQRVGKEVAEFVGRVGEDVSLVLGIMAKLLPLRALPLLFNLLKVVPRVFGRVVGKSREAVAQAMVLEMFREEDYYNDDVLDQIGASILGVEGPRRHPDEPPDDEVFELFPMFMGGLLSAHNRAVLAQLGCPIKTLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLGSLRQLNLAGVRMTPLKCTVVAAVLGSGRHALDEVNLASCQLDPMGLRTLRPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQVTTLRLSNNPLTAAGVALLMEGLAGNTSLKHLSLLHTGLGDEGLELLAAQLDRNQQLQELNVAYNGAGDTAALALAKAAREHPSLELLHLYFNELSSEGRQALRDMGSTTEGGARVVVSLTEGTAVSEYWSVILGEVQRNLNSWDRGRVRRHLELLLRDLEDNRGATLNPWRKAQLLRVESEVKALLEQLGGPGT", "length": 975, "header": "tr|F1SAH1-1|F1SAH1_PIG Isoform 1 of NLR family member X1 OS=Sus scrofa OX=9823 GN=NLRX1 PE=1 SV=1 CANONICAL=F1SAH1-1" }, "isoforms": [ { "isoform_ac": "A0A287BQG4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAH1/entry#A0A287BQG4-1", "sequence": { "sequence": "MRWGCHLPRASWGPGLGRVLQPADERIPFLIHWSWPLRGQRPLGPPRAFIRHHGSSADSDPPPGRHRLLFQGAAATEAIQQHRRNLAEWFSRLPREERQFGPTFALDTVHVDPVIRESTPDELLRPTAELALEHHPPSAGLPPLALSQLFDPDACGRRVQTVVLYGTVGTGKSTLVRKMVLDWCYGRLPAFELLIPFSCEDLSSLGPAPASLCQLVAQRYTPLKEILPLMASAGSRLLFVLHGLEHLNLNFQLADTGLCSDLEEPKAPAAIIVNLLRKYMLPEASILVTTRPSAIGRIPSKYVGRYGEICGFSDTNLQKLYFQLRLNQPDCEHGAGGAGVSATLAQHDNLVEMLSRNLEGHHQIAAACFLPSYCWLVCATLHFLHAPTPAGQTLTSIYTSFLRLNFSGEMLDSTDPSKLSLMAYAARTMGKLAYEGVSSRKTYFSEEDVRGCLEAGIKTEEEFQLLHVFRRDALRFFLAPCVEPGHPGTFVFTVPAMQEYLAALYIVLGLRKTTLQRVGKEVAEFVGRVGEDVSLVLGIMAKLLPLRALPLLFNLLKVVPRVFGRVVGKSREAVAQAMVLEMFREEDYYNDDVLDQIGASILGVEGPRRHPDEPPDDEVFELFPMFMGGLLSAHNRAVLAQLGCPIKTLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLGSLRQLNLAGVRMTPLKCTVVAAVLGSGRHALDEVNLASCQLDPMGLRTLRPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQVTTLRLYFNELSSEGRQALRDMGSTTEGGARVVVSLTEGTAVSEYWSVILGEVQRNLNSWDRGRVRRHLELLLRDLEDNRGATLNPWRKAQLLRVESEVKALLEQLGGPGT", "length": 891, "header": "tr|A0A287BQG4-1|F1SAH1_PIG Computationally mapped isoform of NLR family member X1 OS=Sus scrofa OX=9823 GN=NLRX1 PE=1 SV=1 CANONICAL=F1SAH1-1" }, "locus": { "chromosome": "9", "start_pos": 46400210, "end_pos": 46387104, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065430.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065430.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058354.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058354.1" } ] } }, { "isoform_ac": "F1SAH1-1", "url": "https://www.uniprot.org/uniprotkb/F1SAH1/entry#F1SAH1-1", "sequence": { "sequence": "MRWGCHLPRASWGPGLGRVLQPADERIPFLIHWSWPLRGQRPLGPPRAFIRHHGSSADSDPPPGRHRLLFQGAAATEAIQQHRRNLAEWFSRLPREERQFGPTFALDTVHVDPVIRESTPDELLRPTAELALEHHPPSAGLPPLALSQLFDPDACGRRVQTVVLYGTVGTGKSTLVRKMVLDWCYGRLPAFELLIPFSCEDLSSLGPAPASLCQLVAQRYTPLKEILPLMASAGSRLLFVLHGLEHLNLNFQLADTGLCSDLEEPKAPAAIIVNLLRKYMLPEASILVTTRPSAIGRIPSKYVGRYGEICGFSDTNLQKLYFQLRLNQPDCEHGAGGAGVSATLAQHDNLVEMLSRNLEGHHQIAAACFLPSYCWLVCATLHFLHAPTPAGQTLTSIYTSFLRLNFSGEMLDSTDPSKLSLMAYAARTMGKLAYEGVSSRKTYFSEEDVRGCLEAGIKTEEEFQLLHVFRRDALRFFLAPCVEPGHPGTFVFTVPAMQEYLAALYIVLGLRKTTLQRVGKEVAEFVGRVGEDVSLVLGIMAKLLPLRALPLLFNLLKVVPRVFGRVVGKSREAVAQAMVLEMFREEDYYNDDVLDQIGASILGVEGPRRHPDEPPDDEVFELFPMFMGGLLSAHNRAVLAQLGCPIKTLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLGSLRQLNLAGVRMTPLKCTVVAAVLGSGRHALDEVNLASCQLDPMGLRTLRPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQVTTLRLSNNPLTAAGVALLMEGLAGNTSLKHLSLLHTGLGDEGLELLAAQLDRNQQLQELNVAYNGAGDTAALALAKAAREHPSLELLHLYFNELSSEGRQALRDMGSTTEGGARVVVSLTEGTAVSEYWSVILGEVQRNLNSWDRGRVRRHLELLLRDLEDNRGATLNPWRKAQLLRVESEVKALLEQLGGPGT", "length": 975, "header": "tr|F1SAH1-1|F1SAH1_PIG Isoform 1 of NLR family member X1 OS=Sus scrofa OX=9823 GN=NLRX1 PE=1 SV=1 CANONICAL=F1SAH1-1" }, "locus": { "chromosome": "9", "start_pos": 46400210, "end_pos": 46387104, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016480.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016480.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016037.2", "url": "https://www.ensembl.org/id/ENSSSCP00000016037.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BQG4", "url": "https://www.uniprot.org/uniprotkb/A0A287BQG4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SAH1", "url": "https://www.uniprot.org/uniprotkb/F1SAH1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial outer membrane", "id": "GO:0005741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005741", "evidence": [ { "database": "UniProtKB", "id": "F1SAH1", "url": "https://www.uniprot.org/uniprotkb/F1SAH1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "F1SAH1", "url": "https://www.uniprot.org/uniprotkb/F1SAH1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" }, { "start_pos": 806, "end_pos": 808, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAH1" }, { "id": "PS50837", "database": "PROSITE", "url": 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"evidence": [ { "id": "F1SEP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEP7" } ] } ], "protein_names": [ { "name": "RPE-retinal G protein-coupled receptor", "type": "recommended", "evidence": [ { "id": "F1SEP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEP7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Receptor for all-trans- and 11-cis-retinal. Binds preferentially to the former and may catalyze the isomerization of the chromophore by a retinochrome-like mechanism.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SE64", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SE64#function" }, { "database": "UniProtKB", "id": "ARBA00057095", "url": "https://www.uniprot.org/uniprotkb/ARBA00057095#function" }, { "database": "UniProtKB", "id": "F1SEP7", "url": "https://www.uniprot.org/uniprotkb/F1SEP7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEP7", "url": "https://www.uniprot.org/uniprotkb/F1SEP7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RGR", "url": "https://www.uniprot.org/uniprotkb/F1SEP7", "locus": { "chromosome": "14", "start_pos": 85496381, "end_pos": 85485171, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010350", "url": "https://www.ensembl.org/id/ENSSSCG00000010350" } ] } } ], "crossref": [ { "id": "F1SEP7", "url": "https://alphafold.ebi.ac.uk/entry/F1SEP7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010350", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010350", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15072", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15072", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001793", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001793", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027430", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027430", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050125", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050125", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24240", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24240", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-419771", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-419771", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1SE64", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SE64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SE64-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SE64-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QX04", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QX04-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX04-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEP7", "url": "https://www.uniprot.org/uniprotkb/F1SEP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEP7-1", "url": "https://www.uniprot.org/uniprotkb/F1SEP7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEPGALPTGFGELEVLAVGTLLLVEALSGLSLNSLTILSFCKTPELRTPSHLLVLSLALADSGISLNAFVAATSSLLRCGRRAGTGAGSLMPSVFHRRWPYGSEGCQAHGFQGFATALASICSSAAIAWGRYHHYCTRSRLDWNTAVSLVFFVWLSSTFWAALPLLGWGHYDYEPLGTCCTLDYSRVDRNFTSFLFTMAFFNFLLPLFITVTSYRLMEQKLGKTGRPPVNTILPARTLMLAWGPYALLYLYATFADVTSISPKLQMVPALIAKMVPTVNAINYALGSEMVHRGIWQCLSPQRRERDREQ", "length": 310, "header": "tr|F1SEP7-1|F1SEP7_PIG Isoform 1 of RPE-retinal G protein-coupled receptor OS=Sus scrofa OX=9823 GN=RGR PE=1 SV=2 CANONICAL=F1SEP7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SE64-1", "url": "https://www.uniprot.org/uniprotkb/F1SEP7/entry#A0A4X1SE64-1", "sequence": { "sequence": "MPALPFLSALSGLSLNSLTILSFCKTPELRTPSHLLVLSLALADSGISLNAFVAATSSLLRRWPYGSEGCQAHGFQGFATALASICSSAAIAWGRYHHYCTRSRLDWNTAVSLVFFVWLSSTFWAALPLLGWGHYDYEPLGTCCTLDYSRVDRNFTSFLFTMAFFNFLLPLFITVTSYRLMEQKLGKTGRPPVNTILPARTLMLAWGPYALLYLYATFADVTSISPKLQMVPALIAKMVPTVNAINYALGSEMVHRGIWQCLSPQRRERDREQ", "length": 273, "header": "tr|A0A4X1SE64-1|F1SEP7_PIG Computationally mapped isoform of RPE-retinal G protein-coupled receptor OS=Sus scrofa OX=9823 GN=RGR PE=1 SV=1 CANONICAL=F1SEP7-1" }, "locus": { "chromosome": "14", "start_pos": 85495896, "end_pos": 85487091, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050952.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050952.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058345.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058345.1" } ] } }, { "isoform_ac": "A0A5G2QX04-1", "url": "https://www.uniprot.org/uniprotkb/F1SEP7/entry#A0A5G2QX04-1", "sequence": { "sequence": "MAEPGALPTGFGELEVLAVGTLLLVEALSGLSLNSLTILSFCKTPELRTPSHLLVLSLALADSGISLNAFVAATSSLLRRAGTGAGSLMPSVFHRRWPYGSEGCQAHGFQGFATALASICSSAAIAWGRYHHYCTRSRLDWNTAVSLVFFVWLSSTFWAALPLLGWGHYDYEPLGTCCTLDYSRVDRNFTSFLFTMAFFNFLLPLFITVTSYRLMEQKLGKTGRPPVPALIAKMVPTVNAINYALGSEMVHRGIWQCLSPQRRERDREQ", "length": 269, "header": "tr|A0A5G2QX04-1|F1SEP7_PIG Computationally mapped isoform of RPE-retinal G protein-coupled receptor OS=Sus scrofa OX=9823 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"MPYLGSEDVVKELKKALCNPHIQADRLRYRNVIQRVIRHMTQGLDMSGVFMEMVKASATVDIVQKKLVYLYMCTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPILNGLRDKASYVRRVAVLGCAKMHNLQGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMPKLDQWGQAEVLNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATKLFLILAKKFPHVQTDVLVQVKGPLLAACSSESRELCFAALCHVRQILHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVSADFAQAAILAIGGIARTYTDQCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEENIQDSEGKQALIWLLGVHGERIPNAPYVLEDFVENVKSEAFPAVKMELLTALLRLFLSRPAECQDMLGRLLYYCIEEEKDMAVRDRGLFYYRLLLSGIDEVKRILCSPKSDPSLGLLEDQAERPVNSWASDFNTLVPVYGKARWATISKCHGVERHGPELPNATSFATAGPLIPEENKESGQELPDSGALTLVPNHQLTAECFEKTWLSLQVAHQQVLPWQGVVHPDTLQMALQVVNIQTIAMSRAGAQPWKAYLSARDDRGCLFLTELLWEPETLQISVKQNEPRTEALNSFVSVLATVIGTIGDLKS", "length": 737, "header": "tr|F1SBR2-1|F1SBR2_PIG Isoform 1 of AP complex subunit beta OS=Sus scrofa OX=9823 GN=AP4B1 PE=3 SV=1 CANONICAL=F1SBR2-1" }, "locus": { "chromosome": "4", "start_pos": 106667640, "end_pos": 106657097, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007408.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007408.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007213.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007213.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T0R8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T0R8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-432720", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432720", "resource": "Reactome", "description": "Lysosome Vesicle Biogenesis" }, { "id": "R-SSC-432722", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432722", "resource": "Reactome", "description": "Golgi Associated Vesicle Biogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LUP7-1", "protein_name": "AP complex subunit beta", "gene_name": "Ap4b1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPYLGSEDVVKELKKALCNPHIQTDRLRYRNVIQRVIRHMTQGLDMSGVFMEMVKASATVDIVQKKLVYLYMGTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPVLNGLRDKASYVRRVAVLGCAKMHNLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEVLHFLLRYQPRSEEELFDILNLLDSYLKSSSTGVVMGATKLFLILAKKFPHVQTDVLVRVKGPLLAACSSESRELCFAALCHVRQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELQGYCTDVSADFAQAAIFAIGSIAKTYTEQCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEENIQDSEGKQALIWLLGVHGEKIPNAPYVLEDFVENVKSETFPAVKMELLTALMRLFLSRPAECQDMLGRLLHYCIEEEKDMAVRDRGLFYYRLLLVGIDEVKQILCSPKSDPSLGLLEDQPERPVNSWASDFNTLVPVYGKAHWATISKSQKVERHRLELPTNTSLAISGQLISEENKEGIQESPDSEALMLVPNLQLTAEYFEKTWLSLKVTHQQVFPWQGEVQPDTLQMALKVVNVQTIAMSRTGAQPWKAYLSAQDDTGCLFLTELLLKPENSEMQISVKQSEARTDTLHGFVSVLETVIGTIGDIKS", "length": 739 }, "evidence": [ { "id": "F1SBR2", "url": "https://omabrowser.org/oma/group/F1SBR2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I6A896-1", "protein_name": "AP complex subunit beta", "gene_name": "Ap4b1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPYLGSEDVVKELKKALCNPHIQADRLRYRNVIQRVIRHMTQGLDMSDVFMEMVKASATVDIVQKKLVYLYMGTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPVVNGLRDKASYVRRVAVLGCAKMHNLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEVLNFLLRYQPRSEEELFDILNLLDSYLKSSSTGVVMGATKLFLILAKKFPHVQTDVLVRVKGPLLAACSSESRELCFAALCHVRQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGNIAKTYTDQCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEENIQDSEGKQALIWLLGVHGEKIPNAPYVLEDFVESVKSETFPAVKMELLTALMRLFLSRPAECQDVLGRLLLYCIEEEKDMAVRDRGLFYYRLLLVGIDKTKQILCSPKSDPSLGLLEDQPERPVNSWASDFNTLAPVYGKAHWATISKCQKIEPHRLELPHNASFATSGHLIAEENKEGAQEPPDSGALVLVPNLQLTAECFEKTWLSLTVSYHQVLPWQGEVQPDTLQMALKVVNIQTIAMSKPGAQPWKAYLSAQDGTGGLFLTELLLKPENSEVQISVKQSEARTEALRGFVSVLETVIGTVGDIKS", "length": 739 }, "evidence": [ { "id": "F1SBR2", "url": "https://omabrowser.org/oma/group/F1SBR2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AAF6DME0-1", "protein_name": "AP complex subunit beta", "gene_name": "AP4B1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPYLGSEDVVKELKKALCNPHIQADRLRYRSVIQRVIRHMTQGVDMSGVFMEMVKASATVDIVQKKLVYLYMCTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPILNGLRDKASYVRRVAVLGCAKMHNLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEVLNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATKLFLILAKKFPHVQTDVLMQVKGPLLAACSSESRELCFAALCHVRQILHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVSADFAQAAILAIGGIARTYTDQCMQILTELLGLRQEHITTVVVQTFRDLAWLCPQCTEAVCQALPGCEENIQDSEGKQALIWLLGVHGKRIPNAPYVLEDFIENVKSETFPAVKMELLTAVLRLFFSRPAECQDMLGRLLHYCIEEEKDMAVRDRGLFYYRLLLAGISEAKQILCSPKSDPSLRLLEDQAERPVNSWALDFNTLVPVYGKARWATLSKCQGVEHHGPELPNTAAFPTSGPLIPEENKESVQELPDSGALMLIPNHQLTAECFEKTWLSLKVAHQQVFPWQGAVHPDTLQMALQVVNIQTIAMSRAGTQPWKAYLSAQDDTGCLFLTELLLEPANLQMQISVKQSEARTETLKSFISVLETVIGTIGDIKS", "length": 739 }, "evidence": [ { "id": "F1SBR2", "url": "https://omabrowser.org/oma/group/F1SBR2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9WV76-1", "protein_name": "AP-4 complex subunit beta-1", "gene_name": "Ap4b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPYLGSEDVVKELKKALCNPHIQADRLRYRNVIQRVIRHMTQGLDMSDVFMEMVKASATVDIVQKKLVYLYMGTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPVVNGLRDKASYVRRVAVLGCAKMHNLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEVLNFLLRYQPRSEEELFDILNLLDSYLKSSSTGVVMGATKLFLILAKKFPHVQTDVLVRVKGPLLAACSSESRELCFAALCHVRQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVAADFAQAAIFAIGSIAKTYTDQCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEENIQDSEGKQALIWLLGVHGEKIPNAPYVLEDFVDNVKSETFPAVKMELLTALMRLVLSRPAECQDMLGRLLHYCIEEEKDMAVRDRGLFYYRLLLVGIDKVKQILCSPKSDPSLGLLEDQPERPVNSWASDFNTLAPVYGRAHWATISKCQQVERHRLELPHNASFATSGHLISEENKEGAQEPDSDTLMLVPNLQLTAEYFEKTWLSLRVSYQQVFPWQGEVQPDTLQMALKVVNIQTIAMSRAGAQPWKAYLSAQDDTGGLFLAELLLKPENSEMQISVKQSKARTESLHGFVSVLETVIGTVGDIKS", "length": 738 }, "evidence": [ { "id": "F1SBR2", "url": "https://omabrowser.org/oma/group/F1SBR2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y6B7-1", "protein_name": "AP-4 complex subunit beta-1", "gene_name": "AP4B1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPYLGSEDVVKELKKALCNPHIQADRLRYRNVIQRVIRYMTQGLDMSGVFMEMVKASATVDIVQKKLVYLYMCTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPILNGLRDKASYVRRVAVLGCAKMHNLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEVLNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATKLFLILAKMFPHVQTDVLVRVKGPLLAACSSESRELCFVALCHVRQILHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGGIARTYTDQCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEENIQDSEGKQALIWLLGVHGERIPNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPAECQDMLGRLLYYCIEEEKDMAVRDRGLFYYRLLLVGIDEVKRILCSPKSDPTLGLLEDPAERPVNSWASDFNTLVPVYGKAHWATISKCQGAERCDPELPKTSSFAASGPLIPEENKERVQELPDSGALMLVPNRQLTADYFEKTWLSLKVAHQQVLPWRGEFHPDTLQMALQVVNIQTIAMSRAGSRPWKAYLSAQDDTGCLFLTELLLEPGNSEMQISVKQNEARTETLNSFISVLETVIGTIEEIKS", "length": 739 }, "evidence": [ { "id": "F1SBR2", "url": "https://omabrowser.org/oma/group/F1SBR2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SBR2", "url": "https://www.uniprot.org/uniprotkb/F1SBR2" } ], "pmid": "" }, { "name": "clathrin adaptor complex", "id": "GO:0030131", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030131", "evidence": [ { "database": "UniProtKB", "id": "F1SBR2", "url": "https://www.uniprot.org/uniprotkb/F1SBR2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SBR2", "url": "https://www.uniprot.org/uniprotkb/F1SBR2" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "F1SBR2", "url": "https://www.uniprot.org/uniprotkb/F1SBR2" } ], "pmid": "" }, { "name": "AP-4 adaptor complex", "id": "GO:0030124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030124", "evidence": [ { "database": "UniProtKB", "id": "F1SBR2", "url": "https://www.uniprot.org/uniprotkb/F1SBR2" } ], "pmid": "" }, { "name": "cytoplasmic side of trans-Golgi network transport vesicle membrane", "id": "GO:0098541", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098541", "evidence": [ { "database": "UniProtKB", "id": "F1SBR2", "url": "https://www.uniprot.org/uniprotkb/F1SBR2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "F1SBR2", "url": "https://www.uniprot.org/uniprotkb/F1SBR2" } ], "pmid": "" }, { "name": "protein targeting", "id": "GO:0006605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006605", "evidence": [ { "database": "UniProtKB", "id": "F1SBR2", "url": "https://www.uniprot.org/uniprotkb/F1SBR2" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "F1SBR2", "url": "https://www.uniprot.org/uniprotkb/F1SBR2" } ], "pmid": "" }, { "name": "protein localization to somatodendritic compartment", "id": "GO:0061938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061938", "evidence": [ { "database": "UniProtKB", "id": "F1SBR2", "url": "https://www.uniprot.org/uniprotkb/F1SBR2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "clathrin binding", "id": "GO:0030276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030276", "evidence": [ { "database": "UniProtKB", "id": "F1SBR2", "url": "https://www.uniprot.org/uniprotkb/F1SBR2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 590, "end_pos": 592, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBR2" }, { "id": "SM01020", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01020" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Beta-adaptin appendage C-terminal subdomain", "eco_id": "ECO_0000259", "start_pos": 620, "end_pos": 730, "start_aa": "Leu", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 590, "end_pos": 592 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SF19-1", "uniprot_ac": "F1SF19", "uniprot_id": "F1SF19_PIG", "mass": { "chemical_mass": 33482.0, "monoisotopic_mass": 33482.0 }, "refseq": { "ac": "XP_003480313", "name": "transcription cofactor vestigial-like protein 2 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480313" }, "gene_names": [ { "name": "VGLL2", "type": "recommended", "evidence": [ { "id": "F1SF19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF19" } ] }, { "name": "VGLL2", "type": "synonym", "evidence": [ { "id": "XP_003480313", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480313" } ] } ], "protein_names": [ { "name": "Vestigial like family member 2", "type": "synonym", "evidence": [ { "id": "F1SF19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF19/entry#names_and_taxonomy" } ] }, { "name": "transcription cofactor vestigial-like protein 2 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_003480313", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480313" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SF19", "url": "https://www.uniprot.org/uniprotkb/F1SF19" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VGLL2", "url": "https://www.uniprot.org/uniprotkb/F1SF19", "locus": { "chromosome": "1", "start_pos": 44549412, "end_pos": 44557797, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004255", "url": "https://www.ensembl.org/id/ENSSSCG00000004255" } ] } } ], "crossref": [ { "id": "F1SF19", "url": "https://alphafold.ebi.ac.uk/entry/F1SF19", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004255", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004255", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100739384", "url": "https://www.ncbi.nlm.nih.gov/gene/100739384", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011520", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011520", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100739384", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739384", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SF19", "url": "https://www.orthodb.org/?gene=F1SF19", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15950", "url": 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{ "id": "F1SF19-1", "url": "https://www.uniprot.org/uniprotkb/F1SF19-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSCLDVMYQVYGPPQPYFAAAYTPYHQKLAYYSKMQEAQECNASPSNSSGSGSSSFSSQTPASIKEEEGSPEKERPPEAEYINSRCVLFTYFQGDISSVVDEHFSRALSQPSSYSPSCTSSKAPRSSGPWRDGSFPMSQRSFPASFWNSAYQTPVPAPLGSPLAAAHSELPFAAAADPYSPAALHSHLHQGAAEPWHHAHPHHAHPHHPYALGGALGAQATAYPRPAAVHEVYAPHFDPRYGPLLMPAASGRPPRLGPAPAPAPGSPPCELSAKGEPAGAAWAAPGGSFASPAGDVAGGLGLSVDSARRYSLCGASLLS", "length": 319, "header": "tr|F1SF19-1|F1SF19_PIG Isoform 1 of Vestigial like family member 2 OS=Sus scrofa OX=9823 GN=VGLL2 PE=3 SV=3 CANONICAL=F1SF19-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TF26-1", "url": "https://www.uniprot.org/uniprotkb/F1SF19/entry#A0A4X1TF26-1", "sequence": { "sequence": "MSCLDVMYQVYGPPQPYFAAAYTPYHQKLAYYSKMQEAQECNASPSNSSGSGSSSFSSQTPASIKEEEGSPEKERPPEAEYINSRCVLFTYFQGDISSVVDEHFSRALSQPSSYSPSCTSSKAPRSSGPWRARRYSLCGASLLS", "length": 144, "header": "tr|A0A4X1TF26-1|F1SF19_PIG Computationally 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member 2 OS=Sus scrofa OX=9823 GN=VGLL2 PE=3 SV=3 CANONICAL=F1SF19-1" }, "locus": { "chromosome": "1", "start_pos": 44557588, "end_pos": 44550482, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004703.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004703.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004595.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004595.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TF26", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TF26" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100739384", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739384", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SF19", "url": "https://www.uniprot.org/uniprotkb/F1SF19" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { 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"name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "F1SF19", "url": "https://www.uniprot.org/uniprotkb/F1SF19" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SF19-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 319, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SF19-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SF19" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], 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mapped isoform of Sidoreflexin OS=Sus scrofa OX=9823 GN=SFXN2 PE=1 SV=1 CANONICAL=F1S852-1" }, "locus": { "chromosome": "14", "start_pos": 113732543, "end_pos": 113722591, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084418.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084418.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067222.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067222.1" } ] } }, { "isoform_ac": "A0A5G2R094-1", "url": "https://www.uniprot.org/uniprotkb/F1S852/entry#A0A5G2R094-1", "sequence": { "sequence": "MEADLSGFNIDAPRWDQSTFLGRVKHFFNITDPRTILVPERELDWAKAMVEKGRVGAVPPGTPVEQLLYAKKLYDSAFHPDTGEKMNVIGRMSFQVPGGMIITGFMLQFYRTMPAVIFWQWVNQSFNALVNYTNRNAASPTSLRQMAVSYITATTTAVATAVSMNMMTKRAPPLVGRWVPFAAVAAANCVNIPMMRQHISGPEALKIQPSGKGPESCGHRHHPGGNFSDRHGSPRHDPAAGGHGKAGETALHEENPGPARPVAGSAVRVLPHLHGAGGVWALPAEMRIASFLFGTGAPRQHQGQV", "length": 305, "header": "tr|A0A5G2R094-1|F1S852_PIG Computationally mapped isoform of Sidoreflexin OS=Sus scrofa OX=9823 GN=SFXN2 PE=1 SV=1 CANONICAL=F1S852-1" }, "locus": { "chromosome": "14", "start_pos": 113732503, "end_pos": 113722591, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083629.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083629.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069810.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069810.1" } ] } }, { "isoform_ac": "A0A8W4FLL2-1", "url": "https://www.uniprot.org/uniprotkb/F1S852/entry#A0A8W4FLL2-1", "sequence": { "sequence": "MEADLSGFNIDAPRWDQSTFLGRVKHFFNITDPRTILVPERELDWAKAMVEKGRVGAVPPGTPVEQLLYAKKLYDSAFHPDTGEKMNVIGRMSFQVPGGMIITGFMLQFYRTMPAVIFWQWVNQSFNALVNYTNRNAASPTSLSPCHTYLPVNLNYSHGSLPPQRAPPLVGRWVPFAAVAAANCVNIPMMRQHISGPEALKIQPSGKGPESCGHRHHPGGNFSDRHGSPRHDPAAGGHGKAGETALHEGEWVLICIFPAPRPPASHILGAHDPLLLPSCPRRIASFLFGTGAPRQHQGQV", "length": 300, "header": "tr|A0A8W4FLL2-1|F1S852_PIG Computationally mapped isoform of Sidoreflexin OS=Sus scrofa OX=9823 GN=SFXN2 PE=1 SV=1 CANONICAL=F1S852-1" }, "locus": { "chromosome": "14", "start_pos": 113732503, "end_pos": 113722591, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094646.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094646.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079793.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079793.1" } ] } }, { "isoform_ac": "F1S852-1", "url": "https://www.uniprot.org/uniprotkb/F1S852/entry#F1S852-1", "sequence": { "sequence": "MEADLSGFNIDAPRWDQSTFLGRVKHFFNITDPRTILVPERELDWAKAMVEKGRVGAVPPGTPVEQLLYAKKLYDSAFHPDTGEKMNVIGRMSFQVPGGMIITGFMLQFYRTMPAVIFWQWVNQSFNALVNYTNRNAASPTSLRQMAVSYITATTTAVATAVSMNMMTKRAPPLVGRWVPFAAVAAANCVNIPMMRQQELIQGICVKDRNHNEMGHSRRAAAIGITQVVISRIAMAAPGMILLPVVMERLEKLRFMKRIRVLHAPLQVLLSGCFLIFMVPVACGLFPQKCELPVSYLEPELRDSIKAKCEEPVPYVYFNKGL", "length": 322, "header": "tr|F1S852-1|F1S852_PIG Isoform 1 of Sidoreflexin OS=Sus scrofa OX=9823 GN=SFXN2 PE=1 SV=3 CANONICAL=F1S852-1" }, "locus": { "chromosome": "14", "start_pos": 113732543, "end_pos": 113722591, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011583.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011583.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011281.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011281.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102157879", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102157879", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6G419-1", "protein_name": "Sidoreflexin", "gene_name": "Sfxn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVDLSGFNIDAPRWDQCTFLGRVKHFFNITDPRTVFVSEQELDWAKSVVEKSRMGLMPPGTQVEQLLYAKKLYDSAFHPDTGEKMNVIGRMSFQVPGGMIITGFMLQFYRTMPAVVFWQWVNQSFNALVNYTNRNAVSPTSVRQMALSYFIATSTAVATAVGMNLWTKRAPPLVGRWVPFAAVAAANCVNIPMMRQQELIQGICVKDRNQNELGHSRRAAAVGITQVVISRITMAAPGMILLPVVMERLERLHLMKKLKVLHAPLQVLLCGCFLLFMVPVACGLFPQECELPVSYLEPELQNTIKAKYGEQVLFAYFNKGL", "length": 322 }, "evidence": [ { "id": "F1S852", "url": "https://omabrowser.org/oma/group/F1S852/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q925N2-1", "protein_name": "Sideroflexin-2", "gene_name": "Sfxn2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEGDLSGFNIDAPRWDQCTFLGRVKHFFNITDPRTVFASEQELDWAKAVVEKSRMGLVPPGTQMEQLLYAKKLYDSAFHPDTGEKMNVIGRMSFQVPGGMLITGFMLQFYRTMPAVIFWQWVNQSFNALVNYTNRNAASPTSVRQMALSYFTATTTAVATAVGMNMWTKRAPPLVGRWVPFAAVAAANCVNIPMMRQQELIQGICVKDRNQNELGHSQRAAAVGIAQVVISRITMAAPGMILLPVIMERLERLHLMKKVKVMHAPLQVLLCGCFLLFMVPVACGLFPQECELSVSYLEPELRDTIKAKYGEQVLFVYFNKGL", "length": 322 }, "evidence": [ { "id": "F1S852", "url": "https://omabrowser.org/oma/group/F1S852/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96NB2-1", "protein_name": "Sideroflexin-2", "gene_name": "SFXN2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEADLSGFNIDAPRWDQRTFLGRVKHFLNITDPRTVFVSERELDWAKVMVEKSRMGVVPPGTQVEQLLYAKKLYDSAFHPDTGEKMNVIGRMSFQLPGGMIITGFMLQFYRTMPAVIFWQWVNQSFNALVNYTNRNAASPTSVRQMALSYFTATTTAVATAVGMNMLTKKAPPLVGRWVPFAAVAAANCVNIPMMRQQELIKGICVKDRNENEIGHSRRAAAIGITQVVISRITMSAPGMILLPVIMERLEKLHFMQKVKVLHAPLQVMLSGCFLIFMVPVACGLFPQKCELPVSYLEPKLQDTIKAKYGELEPYVYFNKGL", "length": 322 }, "evidence": [ { "id": "F1S852", "url": "https://omabrowser.org/oma/group/F1S852/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VVW3-1", "protein_name": "Sideroflexin-2", "gene_name": "Sfxn2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": 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transporter activity", "id": "GO:0015075", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015075", "evidence": [ { "database": "UniProtKB", "id": "F1S852", "url": "https://www.uniprot.org/uniprotkb/F1S852" } ], "pmid": "" }, { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F1S852", "url": "https://www.uniprot.org/uniprotkb/F1S852" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 123, "end_pos": 125, "annotation": "n_glycosylation_sequon" }, { "start_pos": 131, "end_pos": 133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], 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"https://www.uniprot.org/uniprotkb/ARBA00037107#function" }, { "database": "UniProtKB", "id": "F1S834", "url": "https://www.uniprot.org/uniprotkb/F1S834#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S834", "url": "https://www.uniprot.org/uniprotkb/F1S834" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANKRD13C", "url": "https://www.uniprot.org/uniprotkb/F1S834", "locus": { "chromosome": "6", "start_pos": 142616328, "end_pos": 142516426, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003790", "url": "https://www.ensembl.org/id/ENSSSCG00000003790" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003790", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003790", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515670", "url": "https://www.ncbi.nlm.nih.gov/gene/100515670", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021832", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021832", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055285", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055285", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515670", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515670", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YPMHQSV", "url": "https://omabrowser.org/oma/group/YPMHQSV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S834", "url": "https://www.orthodb.org/?gene=F1S834", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12447", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12447", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12447:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12447:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11904", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11904", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127975", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127975", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1UBF2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UBF2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UBF2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1PL67", "url": "https://www.uniprot.org/uniprotkb/A0A8D1PL67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1PL67-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1PL67-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S834", "url": "https://www.uniprot.org/uniprotkb/F1S834", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S834-1", "url": "https://www.uniprot.org/uniprotkb/F1S834-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTGEKIRSLRRDHKPSKEEGDLLEPGDEEAAAALGGTLTGGRIGTGGGGKGSRACHKIFSNHHHRLQLKTASASSNPPSAPALPLHNSSVTTTSQSPALLAGTNSIAVVADRGSCPAHYPVHECVFKGDVRRLSSLIRTHNIGQKDNHGNTPLHLAVMLGNKECAHLLLAHNAPVKVKNAQGWSPLAEAISYGDRQMITALLRKLKQQSRESVEEKRPRLLKALKELGDFYLELHWDFQSWVPLLSRILPSDACKIYKQGITIRLDTTLIDFTDMKCQRGDLSFIFNGDAAPSESFVVLDNEQKVYQRIHHEESEMETEEEVDILMSSDIYSATLSTKSISFTRAQTGWLFREDKTERVGNFLADFYLVNGLVLESRKRREHLSEEDILRNKAIMESLSKGGNIMEQNFEPSRRQSLTPPPQNTITWEEYISAENGKAPHLGRELVCKESKKTFKATIAMSQEFPLGIESLLNVLEVIAPFKHFNKLREFVQMKLPPGFPVKLDIPVFPTITATVTFQEFRYDEFDGSIFTIPDDYKEDPSRFPDL", "length": 546, "header": "tr|F1S834-1|F1S834_PIG Isoform 1 of Ankyrin repeat domain-containing protein 13C OS=Sus scrofa OX=9823 GN=ANKRD13C PE=4 SV=4 CANONICAL=F1S834-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UBF2-1", "url": "https://www.uniprot.org/uniprotkb/F1S834/entry#A0A4X1UBF2-1", "sequence": { "sequence": "MTGEKIRSLRRDHKPSKEEGDLLEPGDEEAAAALGGTLTGGRIGTGGGGKGSRACHKIFSNHHHRLQLKTASASSNPPSAPALPLHNSSVTTTSQSPALLAGTNSIAVVADRGSCPAHYPVHECVFKGDVRRLSSLIRTHNIGQKDNHVTALLRKLKQQSRESVEEKRPRLLKALKELGDFYLELHWDFQSWVPLLSRILPSDACKIYKQGITIRLDTTLIDFTDMKCQRGDLSFIFNGDAAPSESFVVLDNEQKVYQRIHHEESEMETEEEVDILMSSDIYSATLSTKSISFTRAQTGWLFREDKTERVGNFLADFYLVNGLVLESRKRREHLSEEDILRNKAIMESLSKGGNIMEQNFEPSRRQSLTPPPQNTITWEEYISAENGKAPHLGRELVCKESKKTFKATIAMSQEFPLGIESLLNVLEVIAPFKHFNKLREFVQMKLPPGFPVKLDIPVFPTITATVTFQEFRYDEFDGSIFTIPDDYKEDPSRFPDL", "length": 497, "header": "tr|A0A4X1UBF2-1|F1S834_PIG Computationally mapped isoform of Ankyrin repeat domain-containing protein 13C OS=Sus scrofa OX=9823 GN=ANKRD13C PE=4 SV=1 CANONICAL=F1S834-1" }, "locus": { "chromosome": "6", "start_pos": 142613805, "end_pos": 142516753, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090242.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090242.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063275.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063275.1" } ] } }, { "isoform_ac": "A0A8D1PL67-1", "url": "https://www.uniprot.org/uniprotkb/F1S834/entry#A0A8D1PL67-1", "sequence": { "sequence": "MTGEKIRSLRRDHKPSKEEGDLLEPGDEEAAAALGGTLTGGRIGTGGGGKGSRACHKIFSNHHHRLQLKTASASSNPPSAPALPLHNSSVTTTSQSPALLAGTNSIAVVADRGSCPAHYPVHECVFKGDVRRLSSLIRTHNIGQKDNHGNTPLHLAVMLGNKECAHLLLAHNAPVKVKNAQGWSPLAEAISYGDRQMITALLRKLKQQSRESVEEKRPRLLKALKELGDFYLELHWDFQSWVPLLSRILPSDACKIYKQGITIRLDTTLIDFTDMKCQRGDLSFIFNGDAAPSESFVVLDNEQKVYQRIHHEESEMETEEEVDILMSSDIYSATLSTKSISFTRAQTGWLFREDKTERVGNFLADFYLVNGLVLESRKRREHLSEEDILRNKAIMESLSKGGNIMEQNFEPSRRQSLTPPPQNTITWEEYISAENGKLLNVLEVIAPFKHFNKLREFVQMKLPPGFPVKLDIPVFPTITATVTFQEFRYDEFDGSIFTIPDDYKEDPSRFPDL", "length": 513, "header": "tr|A0A8D1PL67-1|F1S834_PIG Computationally mapped isoform of Ankyrin repeat domain-containing protein 13C OS=Sus scrofa OX=9823 GN=ANKRD13C PE=4 SV=1 CANONICAL=F1S834-1" }, "locus": { "chromosome": "6", "start_pos": 142613805, "end_pos": 142516753, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046944.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046944.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034273.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034273.2" } ] } }, { "isoform_ac": "F1S834-1", "url": "https://www.uniprot.org/uniprotkb/F1S834/entry#F1S834-1", "sequence": { "sequence": "MTGEKIRSLRRDHKPSKEEGDLLEPGDEEAAAALGGTLTGGRIGTGGGGKGSRACHKIFSNHHHRLQLKTASASSNPPSAPALPLHNSSVTTTSQSPALLAGTNSIAVVADRGSCPAHYPVHECVFKGDVRRLSSLIRTHNIGQKDNHGNTPLHLAVMLGNKECAHLLLAHNAPVKVKNAQGWSPLAEAISYGDRQMITALLRKLKQQSRESVEEKRPRLLKALKELGDFYLELHWDFQSWVPLLSRILPSDACKIYKQGITIRLDTTLIDFTDMKCQRGDLSFIFNGDAAPSESFVVLDNEQKVYQRIHHEESEMETEEEVDILMSSDIYSATLSTKSISFTRAQTGWLFREDKTERVGNFLADFYLVNGLVLESRKRREHLSEEDILRNKAIMESLSKGGNIMEQNFEPSRRQSLTPPPQNTITWEEYISAENGKAPHLGRELVCKESKKTFKATIAMSQEFPLGIESLLNVLEVIAPFKHFNKLREFVQMKLPPGFPVKLDIPVFPTITATVTFQEFRYDEFDGSIFTIPDDYKEDPSRFPDL", "length": 546, "header": "tr|F1S834-1|F1S834_PIG Isoform 1 of Ankyrin repeat domain-containing protein 13C OS=Sus scrofa OX=9823 GN=ANKRD13C PE=4 SV=4 CANONICAL=F1S834-1" }, "locus": { "chromosome": "6", "start_pos": 142613805, "end_pos": 142516753, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004194.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004194.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004100.5", "url": "https://www.ensembl.org/id/ENSSSCP00000004100.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1PL67", "url": "https://www.uniprot.org/uniprotkb/A0A8D1PL67" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515670", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515670", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZXI8-1", "protein_name": "Ankyrin repeat domain 13C", "gene_name": "ANKRD13C", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTGEKLRSLRRDHKPSKEDGDLLGPGEEEAAAAPGAIFTGGRGSSGKGGRAGGHRIFSNHHHHQRLPLKGGPAGGGTGPAAEPERCPAHFPVHECVFKGDVRRLSALIRTQGIGQKDSHGNTPLHLAVMLGHKECAHLLLAHNAPVKVKNAQGWSPLAEAISYGDRQMITALLRKLKQQSRESVEEKRPRLLKALKELGDFYLELHWDFQSWVPLLSRILPSDACKIHKQGINIRLDTTLIDFTDMKCQRGDLSFIFNGDAAPSESFVVLDNEQKVYQRIHHEESEMETEEEVDILMSSDIYSATLSTKSITFTRAQTGWLFREDKTERVGNFLADFYLVNGLVLESRKRREHLSEEDILRNKAIMESLSKGGNLMEQNFEPVRRQSLTPPSPNTITWEEYISAENGKAPHLGRELVCKESKKTFKATIAMSQEFPLGIESLLNVLEVIAPFKHFNKLREFVQMKLPPGFPVKLDIPVFPTITATVTFQEFRYDEFDESIFTIPDDYKEDPSRFPDL", "length": 517 }, "evidence": [ { "id": "F1S834", "url": "https://omabrowser.org/oma/group/F1S834/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q3UX43-1", "protein_name": "Ankyrin repeat domain-containing protein 13C", "gene_name": "Ankrd13c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGEKIRSLRRDHKPSKEDGDVLEPCEEEATAALGGAFTGGRSGPGGSGKGGKACHKIFSHHHRLQLKAPAVPGPGVPAPPQHNAVTATCPAPACLGGSNPALVADGGGCPSLYPVHECVFKGDVRRLSSLIRTHNIGQKDNHGNTPLHLAVMLGNKECAHLLLAHNAPVKVKNAQGWSPLAEAISYGDRQMITALLRKLKQQSRESVGEKRPRLLKALKELGDFYLELHWDFQSWVPLLSRILPSDACKIYKQGINIRLDTTLIDFTDMKCQRGDLSFIFNGDAAPSESFVVLDNEQKVYQRIHHEESEMETEEEVDILMSSDIYSATLSTKSISFTRAQTGWLFREDKTERVGNFLADFYLVNGLVLESRKRREHLSEEDILRNKAIMESLSKGGSLAEQSFEPVRRQSLTPPPQNTITWEEYISAENGKAPHLGRELVCKESKKTFKATVAMSQEFPLGIESLLNVLEVIAPFKHFNKLREFVQMKLPPGFPVKLDIPVFPTITATVTFQEFRCDEFDGSIFAIPEDYKEDPSRFPDL", "length": 541 }, "evidence": [ { "id": "F1S834", "url": "https://omabrowser.org/oma/group/F1S834/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54EK8-1", "protein_name": "Ankyrin repeat domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFFKSNSNSNSDTSSSSSNNTSNDIKPEKKDYKHIDDPFRIHRLTCENNIEEIKKYLDSEPYYKEFIDIRDTHGYSASHYAAHFGHKNIIELLLKYGADPTKKSAAGWSVIQEACGRKDREIVTLLLQQIKNKIENEFTKRMPILVSALENIPDFEMELKWEVKSWVPLVTRFCPYDTYKIYKQGSSFRVDTSIIGMDGIKFIRGDLSFLYKSQRLFSMDNIKHTYSEMEIVASKNPKVHDEEVDILLDQTMNRVKLMTDEIVFTKSKTWFGNEKTEKIGDNADWNAKMFDVTNVDLKIMARKPKRQPNHPHFNKDQQQLEGKDSSSSGSDDDDNNNNNNNNKITTNIDDNNNNNDEDELNQNPIEQTKKYIESLKNVTYEIRDSTLKSKIMEPGYFKAPKNFDPYTHEQNINKSKIKTQGLLCDGETVSERHKYFKGTIWISEEFPRKVTDLLPIFEVLSPTNKLFSRLCEFISLKLPSDGFPVKLDLPLFPTISATVIFTKYIEKPVDKNLFTIPSHYIVKTTPPSSTTFTK", "length": 535 }, "evidence": [ { "id": "F1S834", "url": "https://omabrowser.org/oma/group/F1S834/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8N6S4-1", "protein_name": "Ankyrin repeat domain-containing protein 13C", "gene_name": "ANKRD13C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTGEKIRSLRRDHKPSKEEGDLLEPGDEEAAAALGGTFTRSRIGKGGKACHKIFSNHHHRLQLKAAPASSNPPGAPALPLHNSSVTANSQSPALLAGTNPVAVVADGGSCPAHYPVHECVFKGDVRRLSSLIRTHNIGQKDNHGNTPLHLAVMLGNKECAHLLLAHNAPVKVKNAQGWSPLAEAISYGDRQMITALLRKLKQQSRESVEEKRPRLLKALKELGDFYLELHWDFQSWVPLLSRILPSDACKIYKQGINIRLDTTLIDFTDMKCQRGDLSFIFNGDAAPSESFVVLDNEQKVYQRIHHEESEMETEEEVDILMSSDIYSATLSTKSISFTRAQTGWLFREDKTERVGNFLADFYLVNGLVLESRKRREHLSEEDILRNKAIMESLSKGGNIMEQNFEPIRRQSLTPPPQNTITWEEYISAENGKAPHLGRELVCKESKKTFKATIAMSQEFPLGIELLLNVLEVVAPFKHFNKLREFVQMKLPPGFPVKLDIPVFPTITATVTFQEFRYDEFDGSIFTIPDDYKEDPSRFPDL", "length": 541 }, "evidence": [ { "id": "F1S834", "url": "https://omabrowser.org/oma/group/F1S834/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1S834", "url": "https://www.uniprot.org/uniprotkb/F1S834" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1S834", "url": "https://www.uniprot.org/uniprotkb/F1S834" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1S834", "url": "https://www.uniprot.org/uniprotkb/F1S834" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "signaling receptor binding", "id": "GO:0005102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005102", "evidence": [ { "database": "UniProtKB", "id": "F1S834", "url": "https://www.uniprot.org/uniprotkb/F1S834" } ], "pmid": "" }, { "name": "protein carrier chaperone", "id": "GO:0140597", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140597", "evidence": [ { "database": "UniProtKB", "id": "F1S834", "url": "https://www.uniprot.org/uniprotkb/F1S834" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein targeting to membrane", "id": "GO:0006612", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006612", "evidence": [ { "database": "UniProtKB", "id": "F1S834", "url": "https://www.uniprot.org/uniprotkb/F1S834" } ], "pmid": "" }, { "name": "cellular response to prostaglandin D stimulus", "id": "GO:0071799", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071799", "evidence": [ { "database": "UniProtKB", "id": "F1S834", "url": "https://www.uniprot.org/uniprotkb/F1S834" } ], "pmid": "" }, { "name": "regulation of anoikis", "id": "GO:2000209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000209", "evidence": [ { "database": "UniProtKB", "id": "F1S834", "url": "https://www.uniprot.org/uniprotkb/F1S834" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S834", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S834" }, { "id": "PF11904", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11904" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ankyrin repeat", "eco_id": "ECO_0000259", "start_pos": 264, "end_pos": 521, "start_aa": "Arg", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"database": "Ensembl Peptide", "id": "ENSSSCP00000037237.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037237.1" } ] } }, { "isoform_ac": "A0A5G2QAJ9-1", "url": "https://www.uniprot.org/uniprotkb/F1SBF9/entry#A0A5G2QAJ9-1", "sequence": { "sequence": "MNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPATYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGEADENGEDYYLWTYKKLEIGFNGNRIVDVNLTSEGKVKLVPNTKIQMSYSVKWKKSDVKFEDRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEEMDDMDRDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLYTERGSMLSTAIFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGKF", "length": 526, "header": "tr|A0A5G2QAJ9-1|F1SBF9_PIG Computationally mapped isoform of Transmembrane 9 superfamily member OS=Sus scrofa OX=9823 GN=TM9SF3 PE=1 SV=1 CANONICAL=F1SBF9-1" }, "locus": { "chromosome": "14", "start_pos": 108023518, "end_pos": 107976906, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068020.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068020.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060409.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060409.1" } ] } }, { "isoform_ac": "A0A8W4FQ57-1", "url": "https://www.uniprot.org/uniprotkb/F1SBF9/entry#A0A8W4FQ57-1", "sequence": { "sequence": "RAATYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPATYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGEADENGEDYYLWTYKKLEIGFNGNRIVDVNLTSEGKVKLVPNTKIQMSYSVKWKKSDVKFEDRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEEMDDMDRDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLYTERGSMLSTAIFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGKF", "length": 540, "header": "tr|A0A8W4FQ57-1|F1SBF9_PIG Computationally mapped isoform of Transmembrane 9 superfamily member OS=Sus scrofa OX=9823 GN=TM9SF3 PE=1 SV=1 CANONICAL=F1SBF9-1" }, "locus": { "chromosome": "14", "start_pos": 108023893, "end_pos": 107976906, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094075.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094075.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080476.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080476.1" } ] } }, { "isoform_ac": "F1SBF9-1", "url": "https://www.uniprot.org/uniprotkb/F1SBF9/entry#F1SBF9-1", "sequence": { "sequence": "MRIGRGGGGGGGGGGGGVGGPAPGRARADEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPATYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGEADENGEDYYLWTYKKLEIGFNGNRIVDVNLTSEGKVKLVPNTKIQMSYSVKWKKSDVKFEDRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEEMDDMDRDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLYTERGSMLSTAIFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID", "length": 589, "header": "tr|F1SBF9-1|F1SBF9_PIG Isoform 1 of Transmembrane 9 superfamily member OS=Sus scrofa OX=9823 GN=TM9SF3 PE=1 SV=3 CANONICAL=F1SBF9-1" }, "locus": { "chromosome": 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B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAJ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SBF9", "url": "https://www.uniprot.org/uniprotkb/F1SBF9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein localization to membrane", "id": "GO:0072657", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072657", "evidence": [ { "database": "UniProtKB", "id": "F1SBF9", "url": "https://www.uniprot.org/uniprotkb/F1SBF9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], 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Classification" ] }, { "id": "IPR052074", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052074", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45706", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45706", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45706:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45706:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46900:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46900:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00102", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00102", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "10684", "url": "https://www.rhea-db.org/rhea/10684", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VGW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VGW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGW9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0RJL1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0RJL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0RJL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0RJL1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8V9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8V9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8V9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEL4", "url": "https://www.uniprot.org/uniprotkb/F1SEL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEL4-1", "url": "https://www.uniprot.org/uniprotkb/F1SEL4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSPRKDLAESGKDPKGEDSDMKNPNPCSLSLCHDDLPSSSQKMAPRSVNCEVFENEVNSGMVKSFLQDFQHSDDFEDQFKEEAESKGEPNSWTTGGSSLKDSKDEELAGPSQTYIPTLQGMEITSERELAQLALVQPIVVSNHEQSTFQDYFKMLEKKLSENEIIQEFMALEFKNLHAVFHSGNELQNREKNRYRDILPYDSTRVPLGENKDYINASYIKIVNSEQEYYYIATQGPLPGTTDDFWQMVLENNSNVIVMITREVEGGVSKCHHYWPVSMKKPLELKSCRIFLENYQILQYFVIRIFQVVRKSTGISHFVKHLQFTKWPDHGTPASAEDFIKYVRYVRKSHLTGPLIVHCSAGVGRTGVFLCVDVVFCAIEKSFSFNIMNIVGQMRQQRCGMIQTKEQYIFCYKIVLEVLQKLLTKK", "length": 426, "header": "tr|F1SEL4-1|F1SEL4_PIG Isoform 1 of Tyrosine-protein phosphatase non-receptor type 20 OS=Sus scrofa OX=9823 GN=PTPN20 PE=3 SV=4 CANONICAL=F1SEL4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VGW9-1", "url": "https://www.uniprot.org/uniprotkb/F1SEL4/entry#A0A4X1VGW9-1", "sequence": { "sequence": "SWTTGGSSLKDSKDEELAGPSQTYIPTLQVQHHEYSGPNETTTLWNDPNKGAVYLLLNCT", "length": 60, "header": "tr|A0A4X1VGW9-1|F1SEL4_PIG Computationally mapped isoform of Tyrosine-protein phosphatase non-receptor type 20 OS=Sus scrofa OX=9823 GN=PTPN20 PE=3 SV=1 CANONICAL=F1SEL4-1" }, "locus": { "chromosome": "14", "start_pos": 88810909, "end_pos": 88766395, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095129.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095129.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075323.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075323.1" } ] } }, { "isoform_ac": "A0A8D0RJL1-1", "url": "https://www.uniprot.org/uniprotkb/F1SEL4/entry#A0A8D0RJL1-1", "sequence": { "sequence": "MIDDSTRVPLGENKDYINASYIKIVNSEQEYYYIATQGPLPGTTDDFWQMVLENNSNVIVMITREVEGGVSKCHHYWPVSMKKPLELKSCRIFLENYQILQYFVIRIFQVVRKSTGISHFVKHLQFTKWPDHGTPASAEDFIKYVRYVRKSHLTGPLIVHCSAGVGRTGVFLCVDVVFCAIEKSFSFNIMNIVGQMRQQRCGMIQTKEQYIFCYKIVLEVLQKLLTKK", "length": 228, "header": "tr|A0A8D0RJL1-1|F1SEL4_PIG Computationally mapped isoform of Tyrosine-protein phosphatase non-receptor type 20 OS=Sus scrofa OX=9823 GN=PTPN20 PE=3 SV=1 CANONICAL=F1SEL4-1" }, "locus": { "chromosome": "14", "start_pos": 88838470, "end_pos": 88766361, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100320.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100320.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076271.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076271.1" } ] } }, { "isoform_ac": "A0A8W4F8V9-1", "url": "https://www.uniprot.org/uniprotkb/F1SEL4/entry#A0A8W4F8V9-1", "sequence": { "sequence": "MSSPRKDLAESGKDPKGEDSDMKNPNPCSLSLCHDDLPSSSQKMAPRSVNCEVFENEVNSGMVKSFLQDFQHSDDFEDQFKEEAESKGEPNSWTTGGSSLKDSKDEELAGPSQTYIPTLQGMEITSERELAQLALVQPIVVSNHEQSTFQDYFKMLEKKLSENEIIQEFMTGISHFVKHLQFTKWPDHGTPASAEDFIKYVRYVRKSHLTGPLIVHCSAGVGRTGVFLCVDVVFCAIEKSFSFNIMNIVGQMRQQRCGMIQTKEQYIFCYKIVLEVLQKLLTKK", "length": 284, "header": "tr|A0A8W4F8V9-1|F1SEL4_PIG Computationally mapped isoform of Tyrosine-protein phosphatase non-receptor type 20 OS=Sus scrofa OX=9823 GN=PTPN20 PE=3 SV=1 CANONICAL=F1SEL4-1" }, "locus": { "chromosome": "14", "start_pos": 88827863, "end_pos": 88766361, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101975.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101975.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075755.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075755.1" } ] } }, { "isoform_ac": "F1SEL4-1", "url": "https://www.uniprot.org/uniprotkb/F1SEL4/entry#F1SEL4-1", "sequence": { "sequence": "MSSPRKDLAESGKDPKGEDSDMKNPNPCSLSLCHDDLPSSSQKMAPRSVNCEVFENEVNSGMVKSFLQDFQHSDDFEDQFKEEAESKGEPNSWTTGGSSLKDSKDEELAGPSQTYIPTLQGMEITSERELAQLALVQPIVVSNHEQSTFQDYFKMLEKKLSENEIIQEFMALEFKNLHAVFHSGNELQNREKNRYRDILPYDSTRVPLGENKDYINASYIKIVNSEQEYYYIATQGPLPGTTDDFWQMVLENNSNVIVMITREVEGGVSKCHHYWPVSMKKPLELKSCRIFLENYQILQYFVIRIFQVVRKSTGISHFVKHLQFTKWPDHGTPASAEDFIKYVRYVRKSHLTGPLIVHCSAGVGRTGVFLCVDVVFCAIEKSFSFNIMNIVGQMRQQRCGMIQTKEQYIFCYKIVLEVLQKLLTKK", "length": 426, "header": "tr|F1SEL4-1|F1SEL4_PIG Isoform 1 of Tyrosine-protein phosphatase non-receptor type 20 OS=Sus scrofa OX=9823 GN=PTPN20 PE=3 SV=4 CANONICAL=F1SEL4-1" }, "locus": { "chromosome": "14", "start_pos": 88827863, "end_pos": 88766361, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011359.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011359.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011065.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011065.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VGW9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VGW9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein tyrosine phosphatase activity", "id": "GO:0004725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004725", "evidence": [ { "database": "UniProtKB", "id": "F1SEL4", "url": "https://www.uniprot.org/uniprotkb/F1SEL4" } ], "pmid": "" }, { "name": "phosphoprotein phosphatase activity", "id": "GO:0004721", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004721", "evidence": [ { "database": "UniProtKB", "id": "F1SEL4", "url": "https://www.uniprot.org/uniprotkb/F1SEL4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SEL4", "url": "https://www.uniprot.org/uniprotkb/F1SEL4" } ], "pmid": "" }, { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "F1SEL4", "url": "https://www.uniprot.org/uniprotkb/F1SEL4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "10684", "name": "", "equation": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "10684", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/10684" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SEL4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 426, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": 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"glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 216, "end_pos": 218 }, { "start_pos": 252, "end_pos": 254 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", 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"UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASLGQVVFWSIISIIIILAGAIAFIIGFGISGRHSITVTTLTSAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVTGLVHEFKKGKDDLSDQDEMFRGRTAVFADQVIVGNASLRLKNVQLTDAGTYKCYIITSKGKGNAKLEYKTGAFSIPEVNVDSNASSESLRCEAPRWFPQPTVVWASQVDQGANFSEVSNTSFELNPENVTMKVVSVLYNVTINTTYSCMIENDIAKATGDIRVTDSEIKRQSHLQLLNSKASLCLSSFVAISWVLLPLCPYLMLK", "length": 282, "header": "tr|F1SAY4-1|F1SAY4_PIG Isoform 1 of V-set domain containing T cell activation inhibitor 1 OS=Sus scrofa OX=9823 GN=VTCN1 PE=3 SV=3 CANONICAL=F1SAY4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9R2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAY4/entry#A0A5G2Q9R2-1", "sequence": { "sequence": "MASLGQVVFWSIISIIIILAGAIAFIIGFGISAFSIPEVNVDSNASSESLRCEAPRWFPQPTVVWASQVDQGANFSEVSNTSFELNPENVTMKVVSVLYNVTINTTYSCMIENDIAKATGDIRVTDSEIKRQSHLQLLNSKASLCLSSFVAISWVLLPLCPYLMLK", "length": 166, "header": "tr|A0A5G2Q9R2-1|F1SAY4_PIG Computationally mapped isoform of V-set domain containing T cell activation inhibitor 1 OS=Sus scrofa OX=9823 GN=VTCN1 PE=3 SV=1 CANONICAL=F1SAY4-1" }, "locus": { "chromosome": "4", "start_pos": 103576610, "end_pos": 103508333, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078908.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078908.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061065.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061065.1" } ] } }, { "isoform_ac": "A0A5G2QH85-1", "url": "https://www.uniprot.org/uniprotkb/F1SAY4/entry#A0A5G2QH85-1", "sequence": { "sequence": "MASLGQVVFWSIISIIIILAGAIAFIIGFGISEVLVWLLVVKDLCRCSRASLGADPCFLNCRKTLDHSHHSHLSWEHRGGWNPELHF", "length": 87, "header": "tr|A0A5G2QH85-1|F1SAY4_PIG Computationally mapped isoform of V-set domain containing T cell activation inhibitor 1 OS=Sus scrofa OX=9823 GN=VTCN1 PE=3 SV=1 CANONICAL=F1SAY4-1" }, "locus": { "chromosome": "4", "start_pos": 103566275, "end_pos": 103508333, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076301.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076301.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064148.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064148.1" } ] } }, { "isoform_ac": "A0A5G2R5D7-1", "url": "https://www.uniprot.org/uniprotkb/F1SAY4/entry#A0A5G2R5D7-1", "sequence": { "sequence": "IISIIIILAGAIAFIIGFGISGRHSITVTTLTSAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVTGLVHEFKKGKDDLSDQDEMFRGRTAVFADQVIVGNASLRLKNVQLTDAGTYKCYIITSKGKGNAKLEYKTGAFSIPEVNVDSNASSESLRCEAPRWFPQPTVVWASQVDQGANFSEVSNTSFELNPENVTMKVVSVLYNVTINTTYSCMIENDIAKATGDIRVTDSEIKRQSHLQLLNSKASLCLSSFVAISWVLLPLCPYLMLK", "length": 271, "header": "tr|A0A5G2R5D7-1|F1SAY4_PIG Computationally mapped isoform of V-set domain containing T cell activation inhibitor 1 OS=Sus scrofa OX=9823 GN=VTCN1 PE=3 SV=1 CANONICAL=F1SAY4-1" }, "locus": { "chromosome": "4", "start_pos": 103576610, "end_pos": 103556931, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073364.1", "url": 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"database": "Ensembl Peptide", "id": "ENSSSCP00000007179.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007179.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9R2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9R2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157401", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157401", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9SAV4-1", "protein_name": "V-set domain containing T cell activation inhibitor 1", "gene_name": "VTCN1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASLGQVIFWSIISIIIILAGAIVFIIGFGISGRRSITVTTLTSAGNIGEDGILSCTFEPDIKLADIVIQWLKEGVMGLVHEFKEGKDVLSDQDEMFRGRTAVFSDQVIVGNASLRLKNVQLTDAGTYKCYIITSKGKGNANLEYKTGAFSIPEVNVDYNASSESLRCEAPRWFPQPTVVWASQVDQGANFSEVSNTSFELNSENVTMKVVSILYNVTINNTYSCMIENNIAKATGDIKVTDSEIKRRSHLQLLNSKASLRVSASSAIDWVLLPLCFYLTLK", "length": 282 }, "evidence": [ { "id": "F1SAY4", "url": "https://omabrowser.org/oma/group/F1SAY4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q501W4-1", "protein_name": "V-set 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { 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"total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S8N3-1", "uniprot_ac": "F1S8N3", "uniprot_id": "F1S8N3_PIG", "mass": { "chemical_mass": 150252.0, "monoisotopic_mass": 150252.0 }, "refseq": {}, "gene_names": [ { "name": "RGS12", "type": "recommended", "evidence": [ { "id": "F1S8N3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8N3" } ] } ], "protein_names": [ { "name": "Regulator of G protein signaling 12", "type": "synonym", "evidence": [ { "id": "F1S8N3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8N3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S8N3", "url": "https://www.uniprot.org/uniprotkb/F1S8N3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RGS12", "url": "https://www.uniprot.org/uniprotkb/F1S8N3", "locus": { "chromosome": "8", "start_pos": 2075971, "end_pos": 1963308, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008698", "url": "https://www.ensembl.org/id/ENSSSCG00000008698" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008698", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008698", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06710", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06710", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08742", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08742", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13162", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13162", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17136", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17136", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016137", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016137", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024066", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024066", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037880", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037880", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046995", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046995", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45945", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45945", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45945:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45945:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00615", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00615", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02188", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02188", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02196", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02196", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16611", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16611", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16612", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16612", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16613", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16613", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QBG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBG8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F685", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F685", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F685-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F685-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8N3", "url": "https://www.uniprot.org/uniprotkb/F1S8N3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8N3-1", "url": "https://www.uniprot.org/uniprotkb/F1S8N3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFRAGDPGERPLLGPPAPRVRSVEVARGRAGYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVVGEGLGHGDSCSSDEEVGFYEGKGRLKPKLDSKALGINRAERVVEEMQSGGIFNMIFETPGLRASSSEPAPLKQRSLSESAAGRLDLGHESGKDPGLKPLSREELAKGGNDDPVFRVGLEQHEDLGLDASILNVAMVVGYLGSIELPSTGGSLESDSVQAIRGCLRRLRAEQKIHSLVTMKVMHDCVQLCTDKAAVLARYPAERLAFSAVCPDDRRFFGLVTMQASDPGSLAQEEEGVLRTSCHVFMVDPDLFSHKIHQGIARRFGFECTADPDTNGCLEFPASSLPVLQFISVLYRDMGELIEGVRARAFVDGDADAHQNTSTSSNSDSGIGNFAPEDRSSRVLVVDLGAGSSRHGPGSGAWEGAGGRGCPPWAAPWNGAFCHDPEAAPGEAAPQADRGWDLGKHLGPASHVEGPPASLRCSVPPSKRGAAGSGGGFGQRWLPVHVLQEWQCGHASDQESYTDSTDGWSSINCGTLPPPMSKIPADRYRLEASPAQPAPSAQRRDWARKALGMQNIFGPHRNVRKTKEDKKGSKFGRGFALAPPSQRAPARRSFGRSRRLSVTRSLDDLESATVSDGELNGPDLKDCVSNHSLSSNASLPSVQSCRRLRERRVASWAVSFERLLQDPLGIRYFSDFLRKEFSEENILFWQACECFNHVPAHDKKELSCRAREIFSKFLSSKATTPVNIDSQAQLADDILSAPHPDMFKEQQLQIFNLMKFDSYARFLKSQLYQECILAEVEGRALPDAQHVPSSPTSKHSGGSDHSNVSTPKKLSGKSKSGRSLNEELGDEDSERKRKGAFFSWSRTRSTGRSQKKKDHGDRPNDPLHANGGLGRRESQGSVSSAGSLDLPEACRTLAPERDKAAKHCSIQLPDGTSCVVPVRAGLSIKEVLAGLCERHGISGAAVDLFLVGGDKPLVLHQDSSILESRDLRLEKRTLFRLDLVPINRSVGLKAKPSKPITEVLRPVAAKYGLRLSELVVRLSGEKEPLDLGAPISSLDGQRVILEEKDPSRGKASTDKQKSTPARQTAAANAGSRNHSATGEERTLGKSNSIKIQGENGRNAREPRLSKREEAIAKIGKKKYQKINLDEAEEFFELISKAQSNRADDQRGLLRKEDLVLPEFLRLPPSPPEPLSPPAAKAFGTRPSTAHGKEWVPRARESPATSPGSADSPPLCASGTPSPPAQDAEAGGVQTVEGEHLADLTLTGEGDLSSPNSTFLPPPPTPRDSAGPPRPGGGARGPPVNTTVDVDQAAGSAHRPGSSALGVRAGPRRPRASGAPTSDHPGLSSPPGGPTRPQASPHHATFV", "length": 1401, "header": "tr|F1S8N3-1|F1S8N3_PIG Isoform 1 of Regulator of G protein signaling 12 OS=Sus scrofa OX=9823 GN=RGS12 PE=4 SV=5 CANONICAL=F1S8N3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBG8-1", "url": "https://www.uniprot.org/uniprotkb/F1S8N3/entry#A0A5G2QBG8-1", "sequence": { "sequence": "MNLEKALPEETQILNSQQSATVSDGELNGPDLKDCVSNHSLSSNASLPSVQSCRRLRERRVASWAVSFERLLQDPLGIRYFSDFLRKEFSEENILFWQACECFNHVPAHDKKELSCRAREIFSKFLSSKATTPVNIDSQAQLADDILSAPHPDMFKEQQLQIFNLMKFDSYARFLKSQLYQECILAEVEGRALPDAQHVPSSPTSKHSGGSDHSNVSTPKKLSGKSKSGRSLNEELGDEDSERKRKGAFFSWSRTRSTGRSQKKKDHGDRPNDPLHANGGLGRRESQGSVSSAGSLDLPEACRTLAPERDKAAKHCSIQLPDGTSCVVPVRAGLSIKEVLAGLCERHGISGAAVDLFLVGGDKPLVLHQDSSILESRDLRLEKRTLFRLDLVPINRSVGLKAKPSKPITEVLRPVAAKYGLRLSELVVRLSGEKEPLDLGAPISSLDGQRVILEEKDPSRGKASTDKQKSTPARQTAAANAGSRNHSATGEERTLGKSNSIKIQGENGRNAREPRLSKREEAIAKIGKKKYQKINLDEAEEFFELISKAQSNRADDQRGLLRKEDLVLPEFLRLPPSPPEPLSPPAAKAFGTRPSTAHGKEWVPRARESPATSPGSADSPPLCASGTPSPPAQDAEAGGVQTVEGEHLADLTLTGEGDLSSPNSTFLPPPPTPRDSAGPPRPGGGARGPPVNTTVDVDQAAGSAHRPGSSALGVRAGPRRPRASGAPTSDHPGLSSPPGGPTRPQASPHHATFV", "length": 754, "header": "tr|A0A5G2QBG8-1|F1S8N3_PIG Computationally mapped isoform of Regulator of G protein signaling 12 OS=Sus scrofa OX=9823 GN=RGS12 PE=4 SV=1 CANONICAL=F1S8N3-1" }, "locus": { "chromosome": "8", "start_pos": 2074967, "end_pos": 2014009, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088288.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088288.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060816.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060816.1" } ] } }, { "isoform_ac": "A0A8W4F685-1", "url": "https://www.uniprot.org/uniprotkb/F1S8N3/entry#A0A8W4F685-1", "sequence": { "sequence": "MFRAGDPGERPLLGPPAPRVRSVEVARGRAGYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVVGEGLGHGDSCSSDEEVGFYEGKGRLKPKLDSKALGINRAERVVEEMQSGGIFNMIFETPGLRASSSEPAPLKQRSLSESAAGRLDLGHESGKDPGLKPLSREELAKGGNDDPVFRVGLEQHEDLGLDASILNVAMVVGYLGSIELPSTGGSLESDSVQAIRGCLRRLRAEQKIHSLVTMKVMHDCVQLCTDKAAVLARYPAERLAFSAVCPDDRRFFGLVTMQASDPGSLAQEEEGVLRTSCHVFMVDPDLFSHKIHQGIARRFGFECTADPDTNGCLEFPASSLPVLQFISVLYRDMGELIEGVRARAFVDGDADAHQNTSTSSNSDSGIGNFAPEDRSSRVLVVDLGAGSSRHGPGSGAWEGAGGRGCPPWAAPWNGAFCHDPEAAPGEAAPQADRGWDLGKHLGPASHVEGPPASLRCSVPPSKRGAAGSGGGFGQRWLPVHVLQEWQCGHASDQESYTDSTDGWSSINCGTLPPPMSKIPADRYRLEASPAQPAPSAQRRDWARKALGMQNIFGPHRNVRKTKEDKKGSKFGRGFALAPPSQRAPARRSFGRSRRLSVTRSLDDLESATVSDGELNGPDLKDCVSNHSLSSNASLPSVQSCRRLRERRVASWAVSFERLLQDPLGIRYFSDFLRKEFSEENILFWQACECFNHVPAHDKKELSCRAREIFSKFLSSKATTPVNIDSQAQLADDILSAPHPDMFKEQQLQIFNLMKFDSYARFLKSQLYQECILAEVEGRALPDAQHVPSSPTSKHSGGSDHSNVSTPKKLSGKSKSGRSLNEELGDEDSERKRKGAFFSWSRTRSTGRSQKKKDHGDRPNDPLHANGGLGRRESQGSVSSAGSLDLPEACRTLAPERDKAAKHCSIQLPDGTSCVVPVRAGLSIKEVLAGLCERHGISGAAVDLFLVGGDKPLVLHQDSSILESRDLRLEKRTLFRLDLVPINRSVGLKAKPSKPITEVLRPVAAKYGLRLSELVVRLSGEKEPLDLGAPISSLDGQRVILEEKDPSRGKASTDKQKSTPARQTAAANAGSRNHSATGEERTLGKSNSIKIQGENGRNAREPRLSKREEAIAKIGKKKYQKINLDEAEEFFELISKAQSNRADDQRGLLRKEDLVLPEFLRLPPSPPEPPCPPRRRQGLRHQTLDSPRQGVGAPGPRESGHQPRLGRQPAPLRLRDPQPPGAGRGGRGRPDRGGRAPGRPDAHGGGGPQQPQQHVPAATPHPAGLGWTPETRYLQA", "length": 1335, "header": "tr|A0A8W4F685-1|F1S8N3_PIG Computationally mapped isoform of Regulator of G protein signaling 12 OS=Sus scrofa OX=9823 GN=RGS12 PE=4 SV=1 CANONICAL=F1S8N3-1" }, "locus": { "chromosome": "8", "start_pos": 2067515, "end_pos": 1989353, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092030.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092030.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074671.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074671.1" } ] } }, { "isoform_ac": "F1S8N3-1", "url": "https://www.uniprot.org/uniprotkb/F1S8N3/entry#F1S8N3-1", "sequence": { "sequence": "MFRAGDPGERPLLGPPAPRVRSVEVARGRAGYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVVGEGLGHGDSCSSDEEVGFYEGKGRLKPKLDSKALGINRAERVVEEMQSGGIFNMIFETPGLRASSSEPAPLKQRSLSESAAGRLDLGHESGKDPGLKPLSREELAKGGNDDPVFRVGLEQHEDLGLDASILNVAMVVGYLGSIELPSTGGSLESDSVQAIRGCLRRLRAEQKIHSLVTMKVMHDCVQLCTDKAAVLARYPAERLAFSAVCPDDRRFFGLVTMQASDPGSLAQEEEGVLRTSCHVFMVDPDLFSHKIHQGIARRFGFECTADPDTNGCLEFPASSLPVLQFISVLYRDMGELIEGVRARAFVDGDADAHQNTSTSSNSDSGIGNFAPEDRSSRVLVVDLGAGSSRHGPGSGAWEGAGGRGCPPWAAPWNGAFCHDPEAAPGEAAPQADRGWDLGKHLGPASHVEGPPASLRCSVPPSKRGAAGSGGGFGQRWLPVHVLQEWQCGHASDQESYTDSTDGWSSINCGTLPPPMSKIPADRYRLEASPAQPAPSAQRRDWARKALGMQNIFGPHRNVRKTKEDKKGSKFGRGFALAPPSQRAPARRSFGRSRRLSVTRSLDDLESATVSDGELNGPDLKDCVSNHSLSSNASLPSVQSCRRLRERRVASWAVSFERLLQDPLGIRYFSDFLRKEFSEENILFWQACECFNHVPAHDKKELSCRAREIFSKFLSSKATTPVNIDSQAQLADDILSAPHPDMFKEQQLQIFNLMKFDSYARFLKSQLYQECILAEVEGRALPDAQHVPSSPTSKHSGGSDHSNVSTPKKLSGKSKSGRSLNEELGDEDSERKRKGAFFSWSRTRSTGRSQKKKDHGDRPNDPLHANGGLGRRESQGSVSSAGSLDLPEACRTLAPERDKAAKHCSIQLPDGTSCVVPVRAGLSIKEVLAGLCERHGISGAAVDLFLVGGDKPLVLHQDSSILESRDLRLEKRTLFRLDLVPINRSVGLKAKPSKPITEVLRPVAAKYGLRLSELVVRLSGEKEPLDLGAPISSLDGQRVILEEKDPSRGKASTDKQKSTPARQTAAANAGSRNHSATGEERTLGKSNSIKIQGENGRNAREPRLSKREEAIAKIGKKKYQKINLDEAEEFFELISKAQSNRADDQRGLLRKEDLVLPEFLRLPPSPPEPLSPPAAKAFGTRPSTAHGKEWVPRARESPATSPGSADSPPLCASGTPSPPAQDAEAGGVQTVEGEHLADLTLTGEGDLSSPNSTFLPPPPTPRDSAGPPRPGGGARGPPVNTTVDVDQAAGSAHRPGSSALGVRAGPRRPRASGAPTSDHPGLSSPPGGPTRPQASPHHATFV", "length": 1401, "header": "tr|F1S8N3-1|F1S8N3_PIG Isoform 1 of Regulator of G protein signaling 12 OS=Sus scrofa OX=9823 GN=RGS12 PE=4 SV=5 CANONICAL=F1S8N3-1" }, "locus": { "chromosome": "8", "start_pos": 2074967, "end_pos": 1989353, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009516.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009516.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009272.5", "url": "https://www.ensembl.org/id/ENSSSCP00000009272.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1274, "start_aa": "Thr", "end_pos": 1274, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1274", "evidence": [ { "id": "GLY_001152", 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"MGDWMTVTDPGLTSESKNISQYTSETKMSPSSLYSQQVLCSSIPLSKNVHSFFSAFCTEENIEQSISYLDQELTTFGFPSLYEESQGKETKRKLNVVAVLNCMNELLVLQRKNLLAQENVETQNLKLGSDMDHLQNCYAKLKEQLETSRREVIGLQERDRQLQCKNRNLHQLLKNEKDEVQKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMNKKDKKIAMEVLNYVGRADGKRGSWRTGKTEARNEDEMYKILLNDYEYRQKQILMENAELKKVLQQMKKEMISLLSPQKQKPRERADDSTGTVISDVEEDGGELSRENIWDLSCETVREQLTNSIRKQWRILKSHVEKLDNQVSKVHLEGFNDEDVISRQDHEQETEKLELEIQQCKEMIKTQQQLLQQQLATACDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFEKERRSFTEAAIRLGLERKAFEEERASWLKQQFLNMTTFDHQNSENVKLFSAFSGSPDRDNPVVHSRPRQKKPHSVSSGSPVCTSKLAKSLPASPSTSDFCQTRSCASEHSSVSVLNITPEETKPNQVGRECTNQKWNPASRPGSQEGRSSGCSATFTNSHIEKDGLP", "length": 614, "header": "tr|F1SAG4-1|F1SAG4_PIG Isoform 1 of SSX family member 2 interacting protein OS=Sus scrofa OX=9823 GN=SSX2IP PE=3 SV=4 CANONICAL=F1SAG4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDV3-1", "url": "https://www.uniprot.org/uniprotkb/F1SAG4/entry#A0A5G2QDV3-1", "sequence": { "sequence": "MTTFDHQNSENVKLFSAFSGSPDRDNPVVHSRPRQKKPHSVSSGSPVCTSKLAKSLPASPSTSDFCQTRSCASEHRYWCTGDLLTCL", "length": 87, "header": "tr|A0A5G2QDV3-1|F1SAG4_PIG Computationally mapped isoform of SSX family member 2 interacting protein OS=Sus scrofa OX=9823 GN=SSX2IP PE=3 SV=1 CANONICAL=F1SAG4-1" }, "locus": { "chromosome": "6", "start_pos": 129105053, "end_pos": 129104332, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068016.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068016.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062328.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062328.1" } ] } }, { "isoform_ac": "A0A8D0QVU7-1", "url": "https://www.uniprot.org/uniprotkb/F1SAG4/entry#A0A8D0QVU7-1", "sequence": { "sequence": "MGDWMTVTDPGLTSESKNISQYTSETKMSPSSLYSQQVLCSSIPLSKNVHSFFSAFCTEENIEQSISYLDQELTTFGFPSLYEESQGKETKRKLNVVAVLNCMNELLVLQRKNLLAQENVETQNLKLGSDMDHLQNCYAKLKEQLETSRREVIGLQERDRQLQCKNRNLHQLLKNEKDEVQKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMNKKDKKIAMEVLNYVGRADGKRGSWRTGKTEARNEDEMYKILLNDYEYRQKQILMENAELKKVLQQMKKEMISLLSPQKQKPRERADDSTGTVISDVEEDGGELSRENIWDLSCETVREQLTNSIRKQWRILKSHVEKLDNQVSKVHLEGFNDEDVISRQDHEQETEKLELEIQQCKEMIKTQQQLLQQQLATACDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFEKERRSFTEAAIRLGLERKAFEEERASWLKQQFLNMTTFDHQNSENVKLFSAFSGSPDRDNPVVHSRPRQKKPHSVSSGSPVCTSKLAKSLPASPSTSDFCQTRSCASEHRCLPCAHADVLPSCT", "length": 571, "header": "tr|A0A8D0QVU7-1|F1SAG4_PIG Computationally mapped isoform of SSX family member 2 interacting protein OS=Sus scrofa OX=9823 GN=SSX2IP PE=3 SV=1 CANONICAL=F1SAG4-1" }, "locus": { "chromosome": "6", "start_pos": 129112921, "end_pos": 129081333, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071611.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071611.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070134.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070134.1" } ] } }, { "isoform_ac": "F1SAG4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAG4/entry#F1SAG4-1", "sequence": { "sequence": "MGDWMTVTDPGLTSESKNISQYTSETKMSPSSLYSQQVLCSSIPLSKNVHSFFSAFCTEENIEQSISYLDQELTTFGFPSLYEESQGKETKRKLNVVAVLNCMNELLVLQRKNLLAQENVETQNLKLGSDMDHLQNCYAKLKEQLETSRREVIGLQERDRQLQCKNRNLHQLLKNEKDEVQKLQNIIASRATQYNHDMKRKEREYNKLKERLHQLVMNKKDKKIAMEVLNYVGRADGKRGSWRTGKTEARNEDEMYKILLNDYEYRQKQILMENAELKKVLQQMKKEMISLLSPQKQKPRERADDSTGTVISDVEEDGGELSRENIWDLSCETVREQLTNSIRKQWRILKSHVEKLDNQVSKVHLEGFNDEDVISRQDHEQETEKLELEIQQCKEMIKTQQQLLQQQLATACDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFEKERRSFTEAAIRLGLERKAFEEERASWLKQQFLNMTTFDHQNSENVKLFSAFSGSPDRDNPVVHSRPRQKKPHSVSSGSPVCTSKLAKSLPASPSTSDFCQTRSCASEHSSVSVLNITPEETKPNQVGRECTNQKWNPASRPGSQEGRSSGCSATFTNSHIEKDGLP", "length": 614, "header": "tr|F1SAG4-1|F1SAG4_PIG Isoform 1 of SSX family member 2 interacting protein OS=Sus scrofa OX=9823 GN=SSX2IP PE=3 SV=4 CANONICAL=F1SAG4-1" }, "locus": { "chromosome": "6", "start_pos": 129110381, "end_pos": 129081333, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004159.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004159.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004065.5", "url": "https://www.ensembl.org/id/ENSSSCP00000004065.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDV3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDV3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1SAG4", "url": "https://www.uniprot.org/uniprotkb/F1SAG4" } ], "pmid": "" }, { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "F1SAG4", "url": "https://www.uniprot.org/uniprotkb/F1SAG4" } ], "pmid": "" }, { "name": "cell leading edge", "id": "GO:0031252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031252", "evidence": [ { "database": "UniProtKB", "id": "F1SAG4", "url": "https://www.uniprot.org/uniprotkb/F1SAG4" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "F1SAG4", "url": "https://www.uniprot.org/uniprotkb/F1SAG4" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "F1SAG4", "url": "https://www.uniprot.org/uniprotkb/F1SAG4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1SAG4", "url": "https://www.uniprot.org/uniprotkb/F1SAG4" } ], "pmid": "" }, { "name": "centrosome cycle", "id": "GO:0007098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007098", "evidence": [ { "database": "UniProtKB", "id": "F1SAG4", "url": "https://www.uniprot.org/uniprotkb/F1SAG4" } ], "pmid": "" }, { "name": "intraciliary transport involved in cilium assembly", "id": "GO:0035735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035735", "evidence": [ { "database": "UniProtKB", "id": "F1SAG4", "url": "https://www.uniprot.org/uniprotkb/F1SAG4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" }, { "start_pos": 481, "end_pos": 483, "annotation": "n_glycosylation_sequon" }, { "start_pos": 563, "end_pos": 565, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 18, "end_pos": 20 }, { "start_pos": 481, "end_pos": 483 }, { "start_pos": 563, "end_pos": 565 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S7S5-1", "uniprot_ac": "F1S7S5", "uniprot_id": "F1S7S5_PIG", "mass": { "chemical_mass": 135727.0, "monoisotopic_mass": 135727.0 }, "refseq": {}, "gene_names": [ { "name": "SUCO", "type": "recommended", "evidence": [ { "id": "F1S7S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7S5" } ] } ], "protein_names": [ { "name": "SUN domain-containing ossification factor", "type": "recommended", "evidence": [ { "id": "F1S7S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7S5/entry#names_and_taxonomy" } ] }, { "name": "Membrane protein CH1", "type": "synonym", "evidence": [ { "id": "F1S7S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7S5/entry#names_and_taxonomy" } ] }, { "name": "SUN-like protein 1", "type": "synonym", "evidence": [ { "id": "F1S7S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7S5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Required for bone modeling during late embryogenesis. Regulates type I collagen synthesis in osteoblasts during their postnatal maturation.", "evidence": [ { "database": "UniProtKB", "id": "F1S7S5", "url": "https://www.uniprot.org/uniprotkb/F1S7S5#function" }, { "database": "UniProtKB", "id": "ARBA00055064", "url": "https://www.uniprot.org/uniprotkb/ARBA00055064#function" }, { "database": "UniProtKB", "id": "A0A5G2QF26", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF26#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S7S5", "url": "https://www.uniprot.org/uniprotkb/F1S7S5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SUCO", "url": "https://www.uniprot.org/uniprotkb/F1S7S5", "locus": { "chromosome": "9", "start_pos": 115007972, "end_pos": 114916855, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015485", "url": "https://www.ensembl.org/id/ENSSSCG00000015485" } ] } } ], "crossref": [ { "id": "F1S7S5", "url": "https://alphafold.ebi.ac.uk/entry/F1S7S5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015485", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015485", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045120", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045120", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12953", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12953", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12953:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12953:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07738", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07738", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QF26", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF26-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF26-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7S5", "url": "https://www.uniprot.org/uniprotkb/F1S7S5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7S5-1", "url": "https://www.uniprot.org/uniprotkb/F1S7S5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKYRRALALVSCLSLCSLVWLPSWHVCCKESSSASSYYSQDDNCALEKEDVQFQNKDEREGPKNTESSGKVDSNLPIPPEEHKLKDDYIVTLQNTESKKLSPSVIETLPTVDLHEDSSSVVVGSENTENISSSSTSEITPISKLDEIEKSGTIPIAKPSETEQSETDCDVGEALDTSAPVDQPSFVSPPESLVGQHIENVSSSHGKGKITKSEFESKVASNDQGGGDPKSALNTSDNVKNESSDYTKSGEIDPTSVTSPKDPEDIPTFDEWKKKVMEVEKEKSQSMHPSSNGGLHATKKVQKNRNNYASVECGAKILAANPEAKSTSAILIENMDLYMLNPCSTKIWFVIELCEPIQVKQLDIANYELFSSTPKDFLVSISDRYPTSKWIKLGTFHGRDERNVQSFPLDEQMYAKYVKMFIKYIKVELVSHFGSEHFCPLSLIRVFGTSMVEEYEEIADSQYQSERQELFDEDYDYPLDYNTGEDKSSKNLLGSATNAILNMVNIAANILGAKTEDLTEGNKSISENGTATTAPKLPESAPVSTPLPSHEFVTTEERVHDTEPSLPDTAKESPIVQLVQEEEEEASPSTVTLLGSGEQEDETSPWFESETQMFCSELTTICCISSFSEYIYKWCSVRVAHYRQRSRTSVSKEKDYLVSAQPPLVLPVESVDVSVLQLPGGELDSKSKEKEVETVDLGDLSSTHRGDLINHTVDAIELEPSHPQTLSQSFLLDITPEIGSSSKIEVSEPIKYEAGHTPSQVIPQESSVEVDNETEKRSESVSSIEKPTVIYETNKLNEVMDNIVKEEVNTMQIITKLSETIVPPINTATVPDNEDGEPKMNIADTPKQILTPAVDSSSLPEIKEEEQSTEDALLKGLQRTATDFYAELQNSSDLGYANGNLIHGSNQKESVFMRLNNRIKALEVNMSLSGRYLEELSQSYDQRQTEAIQLLQAQLTNMQLVLNLSTTVAELKHEVSDRQSYLVISLVLCVILGLMLCMQRCRNSSQFDGDFISKLPKSNQYPSPKRCFSSYDDMNLKRRTSFPLIRSKSLQLTGEEVDPNDLYIVEPLKFSPEKKKKRCKYKTEKIETIKPADPLHPIANGDIKGRKPFTNQRDFSNIGEVYHSSYKGPPSEGSSETSSQSEESYFCGISACTSLCNGQSQKTKTEKRALKRRRSKVQDQGKLIKTLIQTKSGSLPSLHDIIKGNKEITVGTFGVTAVSGHI", "length": 1222, "header": "tr|F1S7S5-1|F1S7S5_PIG Isoform 1 of SUN domain-containing ossification factor OS=Sus scrofa OX=9823 GN=SUCO PE=4 SV=4 CANONICAL=F1S7S5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QF26-1", "url": "https://www.uniprot.org/uniprotkb/F1S7S5/entry#A0A5G2QF26-1", "sequence": { "sequence": "MKKYRRALALVSCLSLCSLVWLPSWHVCCKESSSASSYYSQDDNCALEKEDVQFQNKNTESKKLSPSVIETLPTVDLHEDSSSVVVGSENTENISSSSTSEITPISKLDEIEKSGTIPIAKPSETEQSETDCDVGEALDTSAPVDQPSFVSPPESLVGQHIENVSSSHGKGKITKSEFESKVASNDQGGGDPKSALNTSDNVKNESSDYTKSGEIDPTSVTSPKDPEDIPTFDEWKKKVMEVEKEKSQSMHPSSNGGLHATKKVQKNRNNYASVECGAKILAANPEAKSTSAILIENMDLYMLNPCSTKIWFVIELCEPIQVKQLDIANYELFSSTPKDFLVSISDRYPTSKWIKLGTFHGRDERNVQSFPLDEQMYAKYVKMFIKYIKVELVSHFGSEHFCPLSLIRVFGTSMVEEYEEIADSQYQSERQELFDEDYDYPLDYNTGEDKSSKNLLGSATNAILNMVNIAANILGAKTEDLTEGNKSISENGTATTAPKLPESAPVSTPLPSHEFVTTEERVHDTEPSLPDTAKESPIVQLVQEEEEEASPSTVTLLGSGEQEDETSPCYDQRQTEAIQLLQAQLTNMQLVLNLSTTVAELKHEVSDRQSYLVISLVLCVILGLMLCMQRCRNSSQFDGDFISKLPKSNQYPSPKRCFSSYDDMNLKRRTSFPLIRSKSLQLTGEEVDPNDLYIVEPLKFSPEKKKKRCKYKTEKIETIKPADPLHPIANGDIKGRKPFTNQRDFSNIGEVYHSSYKGPPSEGSSETSSQSEESYFCGISACTSLCNGQSQKTKTEKRALKRRRSKVQDQGKLIKTLIQTKSGSLPSLHDIIKGNKEITVGTFGVTAVSGHI", "length": 852, "header": "tr|A0A5G2QF26-1|F1S7S5_PIG Computationally mapped isoform of SUN domain-containing ossification factor OS=Sus scrofa OX=9823 GN=SUCO PE=4 SV=1 CANONICAL=F1S7S5-1" }, "locus": { "chromosome": "9", "start_pos": 115006349, "end_pos": 114917314, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083132.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083132.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062799.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062799.1" } ] } }, { "isoform_ac": "F1S7S5-1", "url": "https://www.uniprot.org/uniprotkb/F1S7S5/entry#F1S7S5-1", "sequence": { "sequence": "MKKYRRALALVSCLSLCSLVWLPSWHVCCKESSSASSYYSQDDNCALEKEDVQFQNKDEREGPKNTESSGKVDSNLPIPPEEHKLKDDYIVTLQNTESKKLSPSVIETLPTVDLHEDSSSVVVGSENTENISSSSTSEITPISKLDEIEKSGTIPIAKPSETEQSETDCDVGEALDTSAPVDQPSFVSPPESLVGQHIENVSSSHGKGKITKSEFESKVASNDQGGGDPKSALNTSDNVKNESSDYTKSGEIDPTSVTSPKDPEDIPTFDEWKKKVMEVEKEKSQSMHPSSNGGLHATKKVQKNRNNYASVECGAKILAANPEAKSTSAILIENMDLYMLNPCSTKIWFVIELCEPIQVKQLDIANYELFSSTPKDFLVSISDRYPTSKWIKLGTFHGRDERNVQSFPLDEQMYAKYVKMFIKYIKVELVSHFGSEHFCPLSLIRVFGTSMVEEYEEIADSQYQSERQELFDEDYDYPLDYNTGEDKSSKNLLGSATNAILNMVNIAANILGAKTEDLTEGNKSISENGTATTAPKLPESAPVSTPLPSHEFVTTEERVHDTEPSLPDTAKESPIVQLVQEEEEEASPSTVTLLGSGEQEDETSPWFESETQMFCSELTTICCISSFSEYIYKWCSVRVAHYRQRSRTSVSKEKDYLVSAQPPLVLPVESVDVSVLQLPGGELDSKSKEKEVETVDLGDLSSTHRGDLINHTVDAIELEPSHPQTLSQSFLLDITPEIGSSSKIEVSEPIKYEAGHTPSQVIPQESSVEVDNETEKRSESVSSIEKPTVIYETNKLNEVMDNIVKEEVNTMQIITKLSETIVPPINTATVPDNEDGEPKMNIADTPKQILTPAVDSSSLPEIKEEEQSTEDALLKGLQRTATDFYAELQNSSDLGYANGNLIHGSNQKESVFMRLNNRIKALEVNMSLSGRYLEELSQSYDQRQTEAIQLLQAQLTNMQLVLNLSTTVAELKHEVSDRQSYLVISLVLCVILGLMLCMQRCRNSSQFDGDFISKLPKSNQYPSPKRCFSSYDDMNLKRRTSFPLIRSKSLQLTGEEVDPNDLYIVEPLKFSPEKKKKRCKYKTEKIETIKPADPLHPIANGDIKGRKPFTNQRDFSNIGEVYHSSYKGPPSEGSSETSSQSEESYFCGISACTSLCNGQSQKTKTEKRALKRRRSKVQDQGKLIKTLIQTKSGSLPSLHDIIKGNKEITVGTFGVTAVSGHI", "length": 1222, "header": "tr|F1S7S5-1|F1S7S5_PIG Isoform 1 of SUN domain-containing ossification factor OS=Sus scrofa OX=9823 GN=SUCO PE=4 SV=4 CANONICAL=F1S7S5-1" }, "locus": { "chromosome": "9", "start_pos": 115006349, "end_pos": 114917314, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016869.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016869.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016418.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016418.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF26", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF26" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "ossification", "id": "GO:0001503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001503", "evidence": [ { "database": "UniProtKB", "id": "F1S7S5", "url": "https://www.uniprot.org/uniprotkb/F1S7S5" } ], "pmid": "" }, { "name": "positive regulation of collagen biosynthetic process", "id": "GO:0032967", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032967", "evidence": [ { "database": "UniProtKB", "id": "F1S7S5", "url": "https://www.uniprot.org/uniprotkb/F1S7S5" } ], "pmid": "" }, { "name": "positive regulation of osteoblast differentiation", "id": "GO:0045669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045669", "evidence": [ { "database": "UniProtKB", "id": "F1S7S5", "url": "https://www.uniprot.org/uniprotkb/F1S7S5" } ], "pmid": "" }, { "name": "regulation of bone remodeling", "id": "GO:0046850", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046850", "evidence": [ { "database": "UniProtKB", "id": "F1S7S5", "url": "https://www.uniprot.org/uniprotkb/F1S7S5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "rough endoplasmic reticulum membrane", "id": "GO:0030867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030867", "evidence": [ { "database": "UniProtKB", "id": "F1S7S5", "url": "https://www.uniprot.org/uniprotkb/F1S7S5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S7S5", "url": "https://www.uniprot.org/uniprotkb/F1S7S5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1S7S5", "url": "https://www.uniprot.org/uniprotkb/F1S7S5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1003, "end_pos": 1005, "annotation": "n_glycosylation_sequon" }, { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 200, "end_pos": 202, "annotation": "n_glycosylation_sequon" }, { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" }, { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 522, "end_pos": 524, "annotation": "n_glycosylation_sequon" }, { "start_pos": 528, "end_pos": 530, "annotation": "n_glycosylation_sequon" }, { "start_pos": 710, "end_pos": 712, "annotation": "n_glycosylation_sequon" }, { "start_pos": 772, "end_pos": 774, "annotation": "n_glycosylation_sequon" }, { "start_pos": 890, "end_pos": 892, "annotation": "n_glycosylation_sequon" }, { "start_pos": 925, "end_pos": 927, "annotation": "n_glycosylation_sequon" }, { "start_pos": 963, "end_pos": 965, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S7S5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1222, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S7S5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S7S5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S7S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7S5" }, { "id": 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"MRVLCAFPEAMPSSNSRPPACLAPVALFLALLLHLSLSSQAGDRRPLPVDRAPGLKEKTLILLDVSTKNPVRTVNENFLSLQLDPSIIHDGWLDFLSSKRLVTLARGLSPAFLRFGGKRTDFLQFQNLRNPAKSRGGPGPDYYLKNYEDDIVRSDVALDKQKGCKIAQHPDVMLELQREKAAQMHLVLLKEQFSNTYSNLILTARSLDKLYNFADCSGLHLIFALNALRRNPNNSWNSSSALSLLKYSASKKYNISWELGNEPNNYRTMHGRAVNGSQLGKDYIQLKSLLQPIRIYSRASLYGPNIGRPRKNVIALLDGFMKVAGSTVDAVTWQHCYIDGRVVKVMDFLKTRLLDTLSDQIRKIQKVVNTYTPGKKIWLEGVVTTSAGGTNNLSDSYAAGFLWLNTLGMLANQGIDVVIRHSFFDHGYNHLVDQNFNPLPDYWLSLLYKRLIGPKVLAVHVAGLQRKPRPGRVIRDKLRIYAHCTNHHNHNYVRGSITLFIINLHRSRKKIKLAGTLRDKLVHQYLLQPYGQEGLKSKSVQLNGQPLTMVDDGTLPDLKPRPLRAGRTLVIPPVTMGFYVVKNVNALACRYR", "length": 592, "header": "tr|F1S8W7-1|F1S8W7_PIG Isoform 1 of Heparanase 2 (inactive) OS=Sus scrofa OX=9823 GN=HPSE2 PE=3 SV=3 CANONICAL=F1S8W7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFR1-1", "url": "https://www.uniprot.org/uniprotkb/F1S8W7/entry#A0A5G2QFR1-1", "sequence": { "sequence": "MRVLCAFPEAMPSSNSRPPACLAPVALFLALLLHLSLSSQAGDRRPLPVDRAPGLKEKTLILLDVSTKNPVRTVNENFLSLQLDPSIIHDGWLDFLSSKRLVTLARGLSPAFLRFGGKRTDFLQFQNLRNPAKSRGGPGPDYYLKNYEDDIVRSDVALDKQKGCKIAQHPDVMLELQREKAAQMHLVLLKEQFSNTYSNLILTARSLDKLYNFADCSGLHLIFALNALRRNPNNSWNSSSALSLLKYSASKKYNISWELGNEPNNYRTMHGRAVNGSQLGKDYIQLKSLLQPIRIYSRASLYGPNIGRPRKNVIALLDGFMKVAGSTVDAVTWQHCYIDGRVVKVMDFLKTRLLDTLSDQIRKIQKVVNTYTPGKKIWLEGVVTTSAGGTNNLSDSYAAGFLWLNTLGMLANQGIDVVIRHSFFDHGYNHLVDQNFNPLPDYWLSLLYKRLIGPKVLAVHVAGLQRKPRPGRVIRDKLRIYAHCTNHHNHNYVRGSITLFIINLHRSRKKIKLAGTLRDKLVHQYLLQPYGQEGLKSKTQRWRYSGII", "length": 548, "header": "tr|A0A5G2QFR1-1|F1S8W7_PIG Computationally mapped isoform of Heparanase 2 (inactive) OS=Sus scrofa OX=9823 GN=HPSE2 PE=3 SV=1 CANONICAL=F1S8W7-1" }, "locus": { "chromosome": "14", "start_pos": 110468942, "end_pos": 109767350, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089359.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089359.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060875.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060875.1" } ] } }, { "isoform_ac": "A0A5G2QZ19-1", "url": "https://www.uniprot.org/uniprotkb/F1S8W7/entry#A0A5G2QZ19-1", "sequence": { "sequence": "MRVLCAFPEAMPSSNSRPPACLAPVALFLALLLHLSLSSQAGDRRPLPVDRAPGLKEKTLILLDVSTKNPVRTVNENFLSLQLDPSIIHDGWLDFLSSKRLVTLARGLSPAFLRFGGKRTDFLQFQNLRNPAKSRGGPGPDYYLKNYEDDIVRSDVALDKQKGCKIAQHPDVMLELQREKAAQMHLVLLKEQFSNTYSNLILTEPNNYRTMHGRAVNGSQLGKDYIQLKSLLQPIRIYSRASLYGPNIGRPRKNVIALLDGFMKVAGSTVDAVTWQHCYIDGRVVKVMDFLKTRLLDTLSDQIRKIQKVVNTYTPGKKIWLEGVVTTSAGGTNNLSDSYAAGFLWLNTLGMLANQGIDVVIRHSFFDHGYNHLVDQNFNPLPDYWLSLLYKRLIGPKVLAVHVAGLQRKPRPGRVIRDKLRIYAHCTNHHNHNYVRGSITLFIINLHRSRKKIKLAGTLRDKLVHQYLLQPYGQEGLKSKSVQLNGQPLTMVDDGTLPDLKPRPLRAGRTLVIPPVTMGFYVVKNVNALACRYR", "length": 534, "header": "tr|A0A5G2QZ19-1|F1S8W7_PIG Computationally mapped isoform of Heparanase 2 (inactive) OS=Sus scrofa OX=9823 GN=HPSE2 PE=3 SV=1 CANONICAL=F1S8W7-1" }, "locus": { "chromosome": "14", "start_pos": 110468942, "end_pos": 109765174, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082427.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082427.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067188.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067188.1" } ] } }, { "isoform_ac": "A0A5G2RIV9-1", "url": "https://www.uniprot.org/uniprotkb/F1S8W7/entry#A0A5G2RIV9-1", "sequence": { "sequence": "MRVLCAFPEAMPSSNSRPPACLAPVALFLALLLHLSLSSQAGDRRPLPVDRAPGLKEKTLILLDVSTKNPVRTVNENFLSLQLDPSIIHDGWLDFLSSKRLVTLARGLSPAFLRFGGKRTDFLQFQNLRNPAKSRGGPGPDYYLKNYEDEPNNYRTMHGRAVNGSQLGKDYIQLKSLLQPIRIYSRASLYGPNIGRPRKNVIALLDGFMKVAGSTVDAVTWQHCYIDGRVVKVMDFLKTRLLDTLSDQIRKIQKVVNTYTPGKKIWLEGVVTTSAGGTNNLSDSYAAGFLWLNTLGMLANQGIDVVIRHSFFDHGYNHLVDQNFNPLPDYWLSLLYKRLIGPKVLAVHVAGLQRKPRPGRVIRDKLRIYAHCTNHHNHNYVRGSITLFIINLHRSRKKIKLAGTLRDKLVHQYLLQPYGQEGLKSKSVQLNGQPLTMVDDGTLPDLKPRPLRAGRTLVIPPVTMGFYVVKNVNALACRYR", "length": 480, "header": "tr|A0A5G2RIV9-1|F1S8W7_PIG Computationally mapped isoform of Heparanase 2 (inactive) OS=Sus scrofa OX=9823 GN=HPSE2 PE=3 SV=1 CANONICAL=F1S8W7-1" }, "locus": { "chromosome": "14", "start_pos": 110468942, "end_pos": 109765174, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087206.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087206.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071609.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071609.1" } ] } }, { "isoform_ac": "F1S8W7-1", "url": "https://www.uniprot.org/uniprotkb/F1S8W7/entry#F1S8W7-1", "sequence": { "sequence": "MRVLCAFPEAMPSSNSRPPACLAPVALFLALLLHLSLSSQAGDRRPLPVDRAPGLKEKTLILLDVSTKNPVRTVNENFLSLQLDPSIIHDGWLDFLSSKRLVTLARGLSPAFLRFGGKRTDFLQFQNLRNPAKSRGGPGPDYYLKNYEDDIVRSDVALDKQKGCKIAQHPDVMLELQREKAAQMHLVLLKEQFSNTYSNLILTARSLDKLYNFADCSGLHLIFALNALRRNPNNSWNSSSALSLLKYSASKKYNISWELGNEPNNYRTMHGRAVNGSQLGKDYIQLKSLLQPIRIYSRASLYGPNIGRPRKNVIALLDGFMKVAGSTVDAVTWQHCYIDGRVVKVMDFLKTRLLDTLSDQIRKIQKVVNTYTPGKKIWLEGVVTTSAGGTNNLSDSYAAGFLWLNTLGMLANQGIDVVIRHSFFDHGYNHLVDQNFNPLPDYWLSLLYKRLIGPKVLAVHVAGLQRKPRPGRVIRDKLRIYAHCTNHHNHNYVRGSITLFIINLHRSRKKIKLAGTLRDKLVHQYLLQPYGQEGLKSKSVQLNGQPLTMVDDGTLPDLKPRPLRAGRTLVIPPVTMGFYVVKNVNALACRYR", "length": 592, "header": "tr|F1S8W7-1|F1S8W7_PIG Isoform 1 of Heparanase 2 (inactive) OS=Sus scrofa OX=9823 GN=HPSE2 PE=3 SV=3 CANONICAL=F1S8W7-1" }, "locus": { "chromosome": "14", "start_pos": 110468942, "end_pos": 109765174, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011525.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011525.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011224.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011224.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFR1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2024096", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2024096", "resource": "Reactome", "description": "HS-GAG degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AN52-1", "protein_name": "Heparanase 2 (inactive)", "gene_name": "Hpse2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRVLCAFPEAMSSSSSRPPSCLALVALFLALLLPLSLSFHAGNRRPLPVDRATGLKEKTLILLDVSTKNPVRTVSENFLSLHLDPSIIHDGWLDFLSSKRLVTLARGLSPAFLRFGGKRTDFLQFQNLRNPAKSRGGPGPDYYLKNYEDDIVRSDVALDKQKGCKIAQHPDIMLELQREKAAQMHLVLLKEQYSNTYSNLILTARSLDKLYNFADCSGLHLIFALNALRRNPNNSWNSSSALSLLKYSASKKYNISWELGNEPNNYRSIHGRAVNGSQLGKDYIQLRSLLQPIRIYSRAGLYGPSIGRPRKNVIALLDGFLKVAGSTVDAVTWQHCYIDGRVVKVMDFLKTRLLDTLSDQIRKIQKVVNTYTPGKKIWLEGIVTTSAGGTNNLSDSYAAGFLWLNTLGMLANQGIDVVIRHSFFDHGYNHLVDQNFNPLPDYWLSLLYKRLIGPKVLAVHVAGLQRKPRPGRVIRDKLRIYAHCTNHHNHNYVRGSITLFIINLHRSRKKIKLAGTLRDKLVHQYLLQPYGQEGLKSKSVQLNGQPLVMVDDGTLPELKPRPLRAGRTLVIPPVTMGFYVVKNVNALACRYR", "length": 592 }, "evidence": [ { "id": "F1S8W7", "url": "https://omabrowser.org/oma/group/F1S8W7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B2RY83-1", "protein_name": "Inactive heparanase-2", "gene_name": "Hpse2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRVLCAFPEAMASSSSRPPSCLALVALFLALLLHLSLSFHAGNRRPLPVDRATGLKEKTLILLDVSTKNPVRTVNENFLSLQLDPSIIHDGWLDFLSSKRLVTLARGLSPAFLRFGGKRTDFLQFQNLRNPAKSRGGPGPDYYLKNYEDDIVRSDVALDKQKGCKIAQHPDVMLELQREKASQMHLVLLKEQYSNTYSNLILTARSLDKLYNFADCSGLHLIFALNALRRNPNNSWNSSSALSLLKYSASKKYNISWELGNEPNNYRSIHGRAVNGSQLGKDYIQLKSLLQPIRVYSRASLYGPNIGRPRKNVIALLDGFMKVAGSTVDAVTWQHCYIDGRVVKVMDFLKTRLLDTLSDQIRKIQKVVNTYTPGKKIWLEGVVTTSAGGTNNLSDSYAAGFLWLNTLGMLANQGIDVVIRHSFFDHGYNHLVDQNFNPLPDYWLSLLYKRLIGPKVLAVHVAGLQRKPRPGRVIRDKLRIYAHCTNHHNHNYVRGSITLFIINLHRSRKKIKLAGTLRDKLVHQYLLQPYGQEGLKSKSVQLNGQPLVMVDDGTLPELKPRPLRAGRTLVIPPVTMGFYVVKNVNALACRYR", "length": 592 }, "evidence": [ { "id": "F1S8W7", "url": "https://omabrowser.org/oma/group/F1S8W7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1NM73-1", "protein_name": "Heparanase 2 (inactive)", "gene_name": "HPSE2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPCSISCPPGLLALMAPGLALMATFSLPSQAGDRRALPVEKSPGVKGRTLILLDVNTKSPVRIISENFLSLQLDPSIIHDGWLDFLSSRRLVTLARGLAPAFLRFAGKRTDFLQFHNVKNPAKSRGGPGPDYYLKNYEDDIVRSDIALDKQKGCKIAQHPDIMLELQREKAAQMHLVLLKEQFSNTYSNLTLTARSLDKLYNFADCSGLHLIFALNALRRNPNNSWNSSNALSLLKYSASKKYNISWELGNEPNNYRTLIGRSVNGSQLGKDYIQLRSLLQLIRTYSRANLYGPNIGRPRKNVMALLEGFMKVAGSTVDAVTWQHYYIDGRVAKVTDFLKTRLLDTLSDQIRKIQKVVNAYTPGKKIWLEGVGATSAGGMNNLSDSYAAGFLWLNTLGLLASQGIDVVVRHSFLDHGHNHLVDQNFNPLPDYWLSLLYKRLIGPKVLAIHVAGLQRKPRPGRVIRDKLRIYAHCTSSHNHNYVRGSITLYIINLHRSRKKIKLAGTLRDKIVHQYLLQPYGKDGLHSKSVQLNGQPLAMVDDGTLPELKPRPLRAGRTLVIPPLTMSFYVVKNVNALACRYR", "length": 582 }, "evidence": [ { "id": "F1S8W7", "url": "https://omabrowser.org/oma/group/F1S8W7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8WWQ2-1", "protein_name": "Inactive heparanase-2", "gene_name": "HPSE2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRVLCAFPEAMPSSNSRPPACLAPGALYLALLLHLSLSSQAGDRRPLPVDRAAGLKEKTLILLDVSTKNPVRTVNENFLSLQLDPSIIHDGWLDFLSSKRLVTLARGLSPAFLRFGGKRTDFLQFQNLRNPAKSRGGPGPDYYLKNYEDDIVRSDVALDKQKGCKIAQHPDVMLELQREKAAQMHLVLLKEQFSNTYSNLILTARSLDKLYNFADCSGLHLIFALNALRRNPNNSWNSSSALSLLKYSASKKYNISWELGNEPNNYRTMHGRAVNGSQLGKDYIQLKSLLQPIRIYSRASLYGPNIGRPRKNVIALLDGFMKVAGSTVDAVTWQHCYIDGRVVKVMDFLKTRLLDTLSDQIRKIQKVVNTYTPGKKIWLEGVVTTSAGGTNNLSDSYAAGFLWLNTLGMLANQGIDVVIRHSFFDHGYNHLVDQNFNPLPDYWLSLLYKRLIGPKVLAVHVAGLQRKPRPGRVIRDKLRIYAHCTNHHNHNYVRGSITLFIINLHRSRKKIKLAGTLRDKLVHQYLLQPYGQEGLKSKSVQLNGQPLVMVDDGTLPELKPRPLRAGRTLVIPPVTMGFYVVKNVNALACRYR", "length": 592 }, "evidence": [ { "id": "F1S8W7", "url": "https://omabrowser.org/oma/group/F1S8W7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9FF10-1", "protein_name": "Heparanase-like protein 1", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGFRVCVIVVFLGCLLLVPEKTMAQEMKRASIVIQGARRVCETDENFVCATLDWWPHDKCNYDQCPWGYSSVINMDLTRPLLTKAIKAFKPLRIRIGGSLQDQVIYDVGNLKTPCRPFQKMNSGLFGFSKGCLHMKRWDELNSFLTATGAVVTFGLNALRGRHKLRGKAWGGAWDHINTQDFLNYTVSKGYVIDSWEFGNELSGSGVGASVSAELYGKDLIVLKDVINKVYKNSWLHKPILVAPGGFYEQQWYTKLLEISGPSVVDVVTHHIYNLGSGNDPALVKKIMDPSYLSQVSKTFKDVNQTIQEHGPWASPWVGESGGAYNSGGRHVSDTFIDSFWYLDQLGMSARHNTKVYCRQTLVGGFYGLLEKGTFVPNPDYYSALLWHRLMGKGVLAVQTDGPPQLRVYAHCSKGRAGVTLLLINLSNQSDFTVSVSNGINVVLNAESRKKKSLLDTLKRPFSWIGSKASDGYLNREEYHLTPENGVLRSKTMVLNGKSLKPTATGDIPSLEPVLRSVNSPLNVLPLSMSFIVLPNFDASACS", "length": 543 }, "evidence": [ { "id": "F1S8W7", "url": "https://omabrowser.org/oma/group/F1S8W7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1S8W7", "url": "https://www.uniprot.org/uniprotkb/F1S8W7" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1S8W7", "url": "https://www.uniprot.org/uniprotkb/F1S8W7" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F1S8W7", "url": "https://www.uniprot.org/uniprotkb/F1S8W7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "hydrolase activity, acting on glycosyl bonds", "id": "GO:0016798", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016798", "evidence": [ { "database": "UniProtKB", "id": "F1S8W7", "url": "https://www.uniprot.org/uniprotkb/F1S8W7" } ], "pmid": "" }, { "name": "heparan sulfate proteoglycan binding", "id": "GO:0043395", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043395", "evidence": [ { "database": "UniProtKB", "id": "F1S8W7", "url": "https://www.uniprot.org/uniprotkb/F1S8W7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "extracellular matrix organization", "id": "GO:0030198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030198", "evidence": [ { "database": "UniProtKB", "id": "F1S8W7", "url": "https://www.uniprot.org/uniprotkb/F1S8W7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 233, "end_pos": 235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 275, "end_pos": 277, "annotation": "n_glycosylation_sequon" }, { "start_pos": 392, "end_pos": 394, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { 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"MAHEVNLHSLQESERETILQVLYRDREIQNVEEERIRKLKTHLQHLRWRGRKNVSQEYKEKSCARCQRALGFLLNRGAVCQGCSHRVCAECRVFLRSARAWKCTVCFEDRNVKIKTGEWFFEERAKKFPAGGKHETAGAKLLQSYQKLSKISVVPPTPPPLSESQCSGSPSRLQELGQFKGFNKSVENLFLSVTTHMKKLSKSQNDMSSDKQQPATGPRQSAGQTERRSQSDTAINVATRKVSTPDLLKPLAQESPKRTTSPVLKQEDRLSSPAPTPLFSGGWRHGSLISINSTCTEMGNFDNTHVTGEIEFAIRYCFRAHSLEICIQACKNLAYGEEKKKKCNPYVKTYLLPDRSSQGKRKTGVQKNTVEPTFQETLKYQVEPAQLGTRQLQVSVWHLGTLARRAFLGEVIVPLATWDFEDSATQSFRWYPLRAKEKCEDSVPPSNGELAVRAKLVLPTEPRKPPEAQGGTGDQPSQNGQLCLVVLGAKNLPVRPDGTLNSFVKGCLTLPDQQRLRLKSPVLKKQACPQWKHSFVFKGVTPSQLRQSSLELTVWDQATFGVSDRLLGGARLGSKDEPAAGADACPQSKLQWQKVLSSPNLWTDLTLTLH", "length": 610, "header": "tr|F1SB43-1|F1SB43_PIG Isoform 1 of Synaptotagmin-like protein 3 OS=Sus scrofa OX=9823 GN=SYTL3 PE=4 SV=4 CANONICAL=F1SB43-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QI69-1", "url": "https://www.uniprot.org/uniprotkb/F1SB43/entry#A0A5G2QI69-1", "sequence": { "sequence": "MAHEVNLHSLQESERETILQVLYRDREIQNVEEERIRKLKTHLQHLRWRGRKNVSQEYKEKSCARCQRALGFLLNRGAVCQGCSHRVCAECRVFLRSARAWKCTVCFEDRNVKIKTGEWFFEERAKKFPAGGKHETAGAKLLQSYQKLSKISVVPPTPPPLSESQCSGSPSRKVSTPDLLKPLAQESPKRTTSPVLKQEDRLSSPAPTPLFSGGWRHGSLISINSTCTEMGNFDNTHVTGEIEFAIRYCFRAHSLEICIQACKNLAYGEEKKKKCNPYVKTYLLPDRSSQGKRKTGVQKNTVEPTFQETLKYQVEPAQLGTRQLQVSVWHLGTLARRAFLGEVIVPLATWDFEDSATQSFRWYPLRAKEKCEDSVPPSNGELAVRAKLVLPTEPRKPPEAQGGTGDQPSQNGQLCLVVLGAKNLPVRPDGTLNSFVKGCLTLPDQQRLRLKSPVLKKQACPQWKHSFVFKGVTPSQLRQSSLELTVWDQATFGVSDRLLGGARLGSKDEPAAGADACPQSKLQWQKVLSSPNLWTDLTLTLH", "length": 542, "header": "tr|A0A5G2QI69-1|F1SB43_PIG Computationally mapped isoform of Synaptotagmin-like protein 3 OS=Sus scrofa OX=9823 GN=SYTL3 PE=4 SV=1 CANONICAL=F1SB43-1" }, "locus": { "chromosome": "1", "start_pos": 8536381, "end_pos": 8453511, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088771.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088771.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064495.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064495.1" } ] } }, { "isoform_ac": "F1SB43-1", "url": "https://www.uniprot.org/uniprotkb/F1SB43/entry#F1SB43-1", "sequence": { "sequence": "MAHEVNLHSLQESERETILQVLYRDREIQNVEEERIRKLKTHLQHLRWRGRKNVSQEYKEKSCARCQRALGFLLNRGAVCQGCSHRVCAECRVFLRSARAWKCTVCFEDRNVKIKTGEWFFEERAKKFPAGGKHETAGAKLLQSYQKLSKISVVPPTPPPLSESQCSGSPSRLQELGQFKGFNKSVENLFLSVTTHMKKLSKSQNDMSSDKQQPATGPRQSAGQTERRSQSDTAINVATRKVSTPDLLKPLAQESPKRTTSPVLKQEDRLSSPAPTPLFSGGWRHGSLISINSTCTEMGNFDNTHVTGEIEFAIRYCFRAHSLEICIQACKNLAYGEEKKKKCNPYVKTYLLPDRSSQGKRKTGVQKNTVEPTFQETLKYQVEPAQLGTRQLQVSVWHLGTLARRAFLGEVIVPLATWDFEDSATQSFRWYPLRAKEKCEDSVPPSNGELAVRAKLVLPTEPRKPPEAQGGTGDQPSQNGQLCLVVLGAKNLPVRPDGTLNSFVKGCLTLPDQQRLRLKSPVLKKQACPQWKHSFVFKGVTPSQLRQSSLELTVWDQATFGVSDRLLGGARLGSKDEPAAGADACPQSKLQWQKVLSSPNLWTDLTLTLH", "length": 610, "header": "tr|F1SB43-1|F1SB43_PIG Isoform 1 of Synaptotagmin-like protein 3 OS=Sus scrofa OX=9823 GN=SYTL3 PE=4 SV=4 CANONICAL=F1SB43-1" }, "locus": { "chromosome": "1", "start_pos": 8536381, "end_pos": 8453511, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004486.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004486.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004384.4", "url": "https://www.ensembl.org/id/ENSSSCP00000004384.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 157, "start_aa": "Thr", "end_pos": 157, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr157", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 276, "start_aa": "Thr", "end_pos": 276, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr276", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QI69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "F1SB43", "url": "https://www.uniprot.org/uniprotkb/F1SB43" } ], "pmid": "" }, { "name": "exocytosis", "id": "GO:0006887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006887", "evidence": [ { "database": "UniProtKB", "id": "F1SB43", "url": "https://www.uniprot.org/uniprotkb/F1SB43" } ], "pmid": "" 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"categories": [ "Protein" ] }, { "id": "A0A5G2QMU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMU5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPD0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPD0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8P1", "url": "https://www.uniprot.org/uniprotkb/F1S8P1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8P1-1", "url": "https://www.uniprot.org/uniprotkb/F1S8P1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATQQRPFHLVVFGASGFTGQFVTEEVAREQVSPERRTSLPWAVAGRCREKLQRVLERAAMKLGRPTLPSEVGIIICDITNPASLDEMAKQAAVVLNCVGPYRFYGEPVVRACIENGASCIDICGEPQFLELIYWKYHEKAAEKGVYIIGSSGFDSIPADMGVIFTTNKMNGTLTAVESFLTLHSGPEGLCIHDGTWKSAVYGFADKSQLKKLRNESHLKPVPVVGPKLKRRWPVSYCRELNSYSIPFLGADVSVVKRTQRYLHENLEQSPVQYAAYVTVGGITSIIKLMFAGLFFLFFVRFGIGRQLLVKFPWLFSFGYFSKQGPTQKQMDASSFTLTFFGQGYSQGLSPDKSKPNIRICTQVKGPEAGYVATPIAMVQAALTLLNDASDLPKAGGVFTPGAAFCRTKLIERLNQRGIEFSVISSSEV", "length": 429, "header": "tr|F1S8P1-1|F1S8P1_PIG Isoform 1 of Saccharopine dehydrogenase-like oxidoreductase OS=Sus scrofa OX=9823 GN=SCCPDH PE=1 SV=3 CANONICAL=F1S8P1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QKI4-1", "url": "https://www.uniprot.org/uniprotkb/F1S8P1/entry#A0A5G2QKI4-1", "sequence": { "sequence": "MATQQRPFHLVVFGASGFTGQFVTEEVAREQVSPERRTSLPWAVAGRCREKLQRVLERAAMKLGRPTLPSEVGIIICDITNPASLDEMAKQAAVVLNCVGPYRFYGEPVVRACIENGASCIDICGEPQFLELIYWKYHEKAAEKGVYIIGSSGFDSIPADMGVIFTTNKMNGTLTAVESFLTLHSGPEGLCIHDGTWKSAVYGFADKSQLKKLRNESHLKPVPVVGPKLKRRWPVSYCRELNSYSIPFLGADVSVVKRTQRYLHENLEQSPVQYAAYVTVGGITSIIKLMFAGLFFLFFVRFGIGRQLLVKFPWLFSFGYFSKQGPTQKQMDASSFTLTFFGQGYSQGLSPDKSKPNIRICTQVKGPVKKNFFLVFFKGRTCGMWRFPG", "length": 389, "header": "tr|A0A5G2QKI4-1|F1S8P1_PIG Computationally mapped isoform of Saccharopine dehydrogenase-like oxidoreductase OS=Sus scrofa OX=9823 GN=SCCPDH PE=1 SV=1 CANONICAL=F1S8P1-1" }, "locus": { "chromosome": "10", "start_pos": 15264335, "end_pos": 15209884, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079500.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079500.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064499.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064499.1" } ] } }, { "isoform_ac": "A0A5G2QMU5-1", "url": "https://www.uniprot.org/uniprotkb/F1S8P1/entry#A0A5G2QMU5-1", "sequence": { "sequence": "MATQQRPFHLVVFGASGFTGQFVTEEVAREQVSPERRTSLPWAVAGRCREKLQRVLERAAMKLGRPTLPSEVGIIICDITNPASLDEMAKQAAVVLNCVGPYRFYGEPVVRACIENGASCIDICGEPQFLELIYWKYHEKAAEKGVYIIGSSVSIHAGLCIHDGTWKSAVYGFADKSQLKKLRNESHLKPVPVVGPKLKRRWPVSYCRELNSYSIPFLGADVSVVKRTQRYLHENLEQSPVQYAAYVTVGGITSIIKLMFAGLFFLFFVRFGIGRQLLVKFPWLFSFGYFSKQGPTQKQMDASSFTLTFFGQGYSQGLSPDKSKPNIRICTQVKGPEAGYVATPIAMVQAALTLLNDASDLPKAGGVFTPGAAFCRTKLIERLNQRGIEFSVISSSEV", "length": 398, "header": "tr|A0A5G2QMU5-1|F1S8P1_PIG Computationally mapped isoform of Saccharopine dehydrogenase-like oxidoreductase OS=Sus scrofa OX=9823 GN=SCCPDH PE=1 SV=1 CANONICAL=F1S8P1-1" }, "locus": { "chromosome": "10", "start_pos": 15264335, "end_pos": 15206162, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072151.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072151.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065984.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065984.1" } ] } }, { "isoform_ac": "A0A8W4FPD0-1", "url": "https://www.uniprot.org/uniprotkb/F1S8P1/entry#A0A8W4FPD0-1", "sequence": { "sequence": "MATQQRPFHLVVFGASGFTGQFVTEEVAREQVSPERRTSLPWAVAGRCREKLQRVLERAAMKLGRPTLPSEVGIIICDITNPASLDEMAKQAAVVLNCVGPYRFYGEPVVRACIENGASCIDICGEPQFLELIYWKYHEKAAEKGVYIIGSSGFDSIPGLCIHDGTWKSAVYGFADKSQLKKLRNESHLKPVPVVGPKLKRRWPVSYCRELNSYSIPFLGADVSVVKRTQRYLHENLEQSPVQYAAYVTVGGITSIIKLMFAGLFFLFFVRFGIGRQLLVKFPWLFSFGYFSKQGPTQKQMDASSFTLTFFGQGYSQGLSPDKSKPNIRICTQVKGPEAGYVATPIAMVQAALTLLNDASDLPKAGGVFTPGAAFCRTKLIERLNQRGIEFSVISSSEV", "length": 399, "header": "tr|A0A8W4FPD0-1|F1S8P1_PIG Computationally mapped isoform of Saccharopine dehydrogenase-like oxidoreductase OS=Sus scrofa OX=9823 GN=SCCPDH PE=1 SV=1 CANONICAL=F1S8P1-1" }, "locus": { "chromosome": "10", "start_pos": 15264335, "end_pos": 15206162, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100137.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100137.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080160.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080160.1" } ] } }, { "isoform_ac": "F1S8P1-1", "url": "https://www.uniprot.org/uniprotkb/F1S8P1/entry#F1S8P1-1", "sequence": { "sequence": "MATQQRPFHLVVFGASGFTGQFVTEEVAREQVSPERRTSLPWAVAGRCREKLQRVLERAAMKLGRPTLPSEVGIIICDITNPASLDEMAKQAAVVLNCVGPYRFYGEPVVRACIENGASCIDICGEPQFLELIYWKYHEKAAEKGVYIIGSSGFDSIPADMGVIFTTNKMNGTLTAVESFLTLHSGPEGLCIHDGTWKSAVYGFADKSQLKKLRNESHLKPVPVVGPKLKRRWPVSYCRELNSYSIPFLGADVSVVKRTQRYLHENLEQSPVQYAAYVTVGGITSIIKLMFAGLFFLFFVRFGIGRQLLVKFPWLFSFGYFSKQGPTQKQMDASSFTLTFFGQGYSQGLSPDKSKPNIRICTQVKGPEAGYVATPIAMVQAALTLLNDASDLPKAGGVFTPGAAFCRTKLIERLNQRGIEFSVISSSEV", "length": 429, "header": "tr|F1S8P1-1|F1S8P1_PIG Isoform 1 of Saccharopine dehydrogenase-like oxidoreductase OS=Sus scrofa OX=9823 GN=SCCPDH PE=1 SV=3 CANONICAL=F1S8P1-1" }, "locus": { "chromosome": "10", "start_pos": 15264335, "end_pos": 15206162, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011888.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011888.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011584.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011584.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 279, "start_aa": "Thr", "end_pos": 279, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr279", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QKI4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKI4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-114608", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "resource": "Reactome", "description": "Platelet degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MX05-1", "protein_name": "Saccharopine dehydrogenase-like oxidoreductase", "gene_name": "SCCPDH", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATQQRPFHLVVFGASGFTGQFVTEEVAREQVSPERTSHLPWAVAGRSREKLLRVLERAAMKLGRPTLSSEVGIIICDITNPASLDEMAKQATVVLNCVGPYRFYGEPVIKACIENGTSCIDISGEPQFLELMYWKYHEKAAEKGVYIIGSSGFDSIPADLGVIYTRNKMNGTLTAVESFLTISSGPEGLCVHDGTWKSAVYGFGDKSNLKKLRNESDMKPVPIVGPKLKRRWPISYCRELNSYSIPFLGADVSVVKRTQRYLHENLEQSPVQYAAYINVGGITSVIKLMFAGLFFLFFVRFGIGRQLLIKFPWLFSFGYFSKQGPTQKQIDASSFTMTFFGQGFSQGVSPVKNKPNIRICTQVKGPEAGYVSTSIAMVQAAMILLNDASDLPKAGGVFTPGAAFSRTKLIDRLNEHGIEFSVISSTEV", "length": 429 }, "evidence": [ { "id": "F1S8P1", "url": "https://omabrowser.org/oma/group/F1S8P1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8LGI2-1", "protein_name": "Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNPTQKPEPVYDMVILGASGFTGKYVVREALKFLQTPSSSPLKSLALAGRNPTRLTQSLEWAARPNPPPSSVAILTADTSDPDSLRRLCTQTKLILNCVGPFRIHGDPVVSACADSGCDYLDISGEPEFMERMEANYHDRAEETGSLIVSACGFDSIPAELGLLFNAKQWVSPSVPNQIEAYLSLESDKKIAGNFGTYESAVLGVANAEKLKELRRSRPRRPRPTICGPPAKGPTLENQKTIGLWALKLPSADAVVVRRTLTTLTEKPHGLPGINESPEQIQKREAFWSSIKPAHFGVKITSKSLFGIFRYVTLGVSLGLLSKFSFGRWLLLKFPSVFSLGWFQKKGPSEEEVESATFKMWFIGRGYSEESLASQGETKPDLEIITRISGPEIGYITTPITLVQCGLIVLGQRESLVKGGVYTPGIVFGSTDIQQRLEDNGISFELISKIKTQG", "length": 454 }, "evidence": [ { "id": "F1S8P1", "url": "https://omabrowser.org/oma/group/F1S8P1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VN86-1", "protein_name": "Saccharopine dehydrogenase NADP binding domain-containing protein", "gene_name": "Sccpdh1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSGDRLDVIIFGASGFTGKYTVFEAVTVLRGLRWGIAGRNREKLEAVLKEMGAKAKKDLSQVPIFIADVNDQASLLEMAKKCRIVVNTAGPYRFHGENVVKCCIESGTHHVDVSGEPQYMETMQLRYDQLAREKGVYVVSACGFDSIPADMGVVFVEKNFDGVVNSVETFLETGIKEGGSGGGTAGLNYGTWESAVYGLAHSDELRGIRKQIYPQRLPRFYPFLKPRPLVFRSTEVDKVCLPFPGSDRSVVMRSQRFLYDQDKKRPVQMQAYVGFSSWLVAGGVIFFATIFGLLSKFKLGRTLLLNYPGLFSGGLASRSGPSEESMERTYFKMTFKASGWLKSDRLAESSNQYTESPTKTLMVRVSGMNPGYGATCVAVLSAALTILRESDKMPSTGGVLPPAAAFSKTGLISELEKHDHGIKFEILANK", "length": 430 }, "evidence": [ { "id": "F1S8P1", "url": "https://omabrowser.org/oma/group/F1S8P1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "lipid droplet", "id": "GO:0005811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005811", "evidence": [ { "database": "UniProtKB", "id": "F1S8P1", "url": "https://www.uniprot.org/uniprotkb/F1S8P1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1S8P1", "url": "https://www.uniprot.org/uniprotkb/F1S8P1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "glycolipid biosynthetic process", "id": "GO:0009247", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009247", "evidence": [ { "database": "UniProtKB", "id": "F1S8P1", "url": "https://www.uniprot.org/uniprotkb/F1S8P1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 171, "end_pos": 173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S8P1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 429, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S8P1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S8P1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S8P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8P1" }, { "id": "PF03435", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03435" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Saccharopine dehydrogenase NADP binding", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 149, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 279 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 171, "end_pos": 173 }, { "start_pos": 215, "end_pos": 217 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SBX6-1", "uniprot_ac": "F1SBX6", "uniprot_id": "F1SBX6_PIG", "mass": { "chemical_mass": 139682.0, "monoisotopic_mass": 139682.0 }, "refseq": {}, "gene_names": [ { "name": "ELAPOR2", "type": "recommended", "evidence": [ { "id": "F1SBX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBX6" } ] } ], "protein_names": [ { "name": "Endosome-lysosome associated apoptosis and autophagy regulator family member 2", "type": "synonym", "evidence": [ { "id": "F1SBX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBX6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBX6", "url": "https://www.uniprot.org/uniprotkb/F1SBX6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ELAPOR2", "url": "https://www.uniprot.org/uniprotkb/F1SBX6", "locus": { "chromosome": "9", "start_pos": 93723880, "end_pos": 93540277, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015394", "url": "https://www.ensembl.org/id/ENSSSCG00000015394" } ] } } ], "crossref": [ { "id": "F1SBX6", "url": "https://alphafold.ebi.ac.uk/entry/F1SBX6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015394", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015394", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR009011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056606", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056606", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056607", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056607", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056609", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056609", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056610", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056610", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22727", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22727", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22727:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22727:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23031", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23031", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23032", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23032", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23087", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23087", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23091", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23091", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QMS5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMS5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R441", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R441", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R441-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R441-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0WV39", "url": "https://www.uniprot.org/uniprotkb/A0A8D0WV39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0WV39-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0WV39-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7H7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7H7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7H7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7H7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBX6", "url": "https://www.uniprot.org/uniprotkb/F1SBX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBX6-1", "url": "https://www.uniprot.org/uniprotkb/F1SBX6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYIVLTTTLWVRYFNYFHLIGEKTKSQTALLFHFPRPPPFHANPNNSKIRSNTRQLGSLGRDAPGAHLCDARSKKILKSRRKIMSLCPGFYSGSPHPPEASLPVGQGNWGWETLWGHPGLSRPSPPIEARVPSGRATPHDPRGWAARFPPRPAPPRPHHLLPGSRVPAPRPAPAPRPRPAVPPSGVTGAPAPAAGAASAGELSAGRPAGAERLASRARSPRGPGAGARPTRGGCLPACQLTARSGTEMLLGQGPARGRGRGRRAGSPHCGLLQPWSPAWICCWALAGCQAAWAGDLPSSSSGRPLPPCLEKDYHFEYTECDSSGSRWRVAIPNSAVDCSGLPDPVRGKECTFSCASGEYLEMKNQVCSKCGEGTYSLGSGIKFDEWDELPAGFSNVATFMDTVVGPSDSRPDGCNNSSWVPRGNYIESNRDDCTVSLIYAVHLKKSGYVFFEYQYVDNNIFFEFFIQNDQCQEMDTTADKWVKLTDNGEWGSHSVMLKSGTNILYWRTTGILMGSKAVKPVLVKNITIEGVAYTSECFPCKPGTFSDKPGSFICQVCPRNTYSEKGAKECIKCDEDSQFSEEGSSECTERPPCTMKDYFQIHTPCDEEGKTQIMYKWIEPKICREDLTDAIRLPPSGEKKDCPPCNPGFFNNGSSSCHPCPPGMFSDGTKECRPCPAGTEPALGFEYKWWNVLPGNMKTSCFNVGNSKCDGMNGWEVAGDHIQSGAGGSDNDYLILNLHIPGFKPPTSMTGAMGSELGRITFVFETLCSADCVLYFMVDINRKSTNVVESWGGTKEKQAYTHVIFKNATFTFTWAFQRTNQGQDNRRFINDMVKIYSITATNAVDGVASSCRACALGSEQSGSSCVPCPPGHYIEKETNQCKECPPDTYLSIHQVYGKEACIPCGPGSRSTQDHSVCYSDCFFYHEKENQSLRYDFSNLSSVGSLMNGPSFTSKGTKYFHFFNISLCGHEGKKSALCTNNITDFTVKETAAGSEDYTNLVGAFVCQSTIIPSESKGFRAALSSQSIILADTFLGVTVETTLQNINIKEDMFPVSPSQIPDVHFFYKSSTTTTSCVNGRSTAVKMRCNPAKQGAGVISVPSKCPAGTCDGCSFYFLWESAEACPLCTEHDFHEIEGACKRGFQETLYVWNEPKWCIKGISLPEKKLSTCETVDFWLKVGAGVGAFTAVLLVALTCYFWKKNQKLEYKYSKLVMTTNSKECELPAADSCAIMEGEDNEEEVVYSNKQSLLGKLKSLATKEKEDHFESVQLKSSRSPNI", "length": 1276, "header": "tr|F1SBX6-1|F1SBX6_PIG Isoform 1 of Endosome-lysosome associated apoptosis and autophagy regulator family member 2 OS=Sus scrofa OX=9823 GN=ELAPOR2 PE=1 SV=3 CANONICAL=F1SBX6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMS5-1", "url": "https://www.uniprot.org/uniprotkb/F1SBX6/entry#A0A5G2QMS5-1", "sequence": { "sequence": "MLLGQGPARGRGRGRRAGSPHCGLLQPWSPAWICCWALAGCQAAWAGDLPSSSSGRPLPPCLEKDYHFEYTECDSSGSRWRVAIPNSAVDCSGLPDPVRGKECTFSCASGEYLEMKNQVCSKCGEGTYSLGSGIKFDEWDELPAGFSNVATFMDTVVGPSDSRPDGCNNSSWVPRGNYIESNRDDCTVSLIYAVHLKKSGYVFFEYQYVDNNIFFEFFIQNDQCQEMDTTADKWVKLTDNGEWGSHSVMLKSGTNILYWRTTGILMGSKAVKPVLVKNITIEGVAYTSECFPCKPGTFSDKPGSFICQVCPRNTYSEKGAKECIKCDEDSQFSEEGSSECTERPPCTMKDYFQIHTPCDEEGKTQIMYKWIEPKICREDLTDAIRLPPSGEKKDCPPCNPGFFNNGSSSCHPCPPGMFSDGTKECRPCPAGTEPALGFEYKWWNVLPGNMKTSCFNVGNSKCDGMNGWEVAGDHIQSGAGGSDNDYLILNLHIPGFKPPTSMTGAMGSELGRITFVFETLCSADCVLYFMVDINRKSTNVVESWGGTKEKQAYTHVIFKNATFTFTWAFQRTNQGQDNRRFINDMVKIYSITATNAVDGVASSCRACALGSEQSGSSCVPCPPGHYIEKETNQCKECPPDTYLSIHQVYGKEACIPCGPGSRSTQDHSVCYSDCFFYHEKENQSLRYDFSNLSSVGSLMNGPSFTSKGTKYFHFFNISLCGHEGKKSALCTNNITDFTVKETAAGSEDYTNLVGAFVCQSTIIPSESKGFRAALSSQSIILADTFLGVTVETTLQNINIKEDMFPVSPSQIPDVHFFYKSSTTTTSCVNGRSTAVKMRCNPAKQGAGVISVPSKCPAGTCDGCSFYFLWESAEACPLCTEHDFHEIEGACKRGFQETLYVWNEPKWCIKGISLPEKKLSTCETVDFWLKVGAGVGAFTAVLLVALTCYFWKKNQKLEYKYSKLVMTTNSKECELPAADSCAIMEGEDNEEEVVYSNKQSLLGKLKSLATKEELKYYRRVERIMWWYSRIPNTYILLSIAYLSIPLSM", "length": 1047, "header": "tr|A0A5G2QMS5-1|F1SBX6_PIG Computationally mapped isoform of Endosome-lysosome associated apoptosis and autophagy regulator family member 2 OS=Sus scrofa OX=9823 GN=ELAPOR2 PE=1 SV=1 CANONICAL=F1SBX6-1" }, "locus": { "chromosome": "9", "start_pos": 93720022, "end_pos": 93541018, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091277.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091277.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066182.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066182.1" } ] } }, { "isoform_ac": "A0A5G2R441-1", "url": "https://www.uniprot.org/uniprotkb/F1SBX6/entry#A0A5G2R441-1", "sequence": { "sequence": "MYIVLTTTLWVRYFNYFHLIGEKTKSQTALLFHFPRPPPFHANPNNSKIRSNTRQLGSLGRDAPGAHLCDARSKKILKSRRKIMSLCPGFYSGSPHPPEASLPVGQGNWGWETLWGHPGLSRPSPPIEARVPSGRATPHDPRGWAARFPPRPAPPRPHHLLPGSRVPAPRPAPAPRPRPAVPPSGVTGAPAPAAGAASAGELSAGRPAGAERLASRARSPRGPGAGARPTRGGCLPACQLTARSGTEMLLGQGPARGRGRGRRAGSPHCGLLQPWSPAWICCWALAGCQAAWAGDLPSSSSGRPLPPCLEKDYHFEYTECDSSGSRWRVAIPNSAVDCSGLPDPVRGKECTFSCASGEYLEMKNQVCSKCGEGTYSLGSGIKFDEWDELPAGFSNVATFMDTVVGPSDSRPDGCNNSSWVPRGNYIESNRDDCTVSLIYAVHLKKSGYVFFEYQYVDNNIFFEFFVMLKSGTNILYWRTTGILMGSKAVKPVLVKNITIEGVAYTSECFPCKPGTFSDKPGSFICQVCPRNTYSEKGAKECIKCDEDSQFSEEGSSECTERPPCTMKDYFQIHTPCDEEGKTQIMYKWIEPKICREDLTDAIRLPPSGEKKDCPPCNPGFFNNGSSSCHPCPPGMFSDGTKECRPCPAGTEPALGFEYKWWNVLPGNMKTSCFNVGNSKCDGMNGWEVAGDHIQSGAGGSDNDYLILNLHIPGFKPPTSMTGAMGSELGRITFVFETLCSADCVLYFMVDINRKSTNVVESWGGTKEKQAYTHVIFKNATFTFTWAFQRTNQGQDNRRFINDMVKIYSITATNAVDGVASSCRACALGSEQSGSSCVPCPPGHYIEKETNQCKECPPDTYLSIHQVYGKEACIPCGPGSRSTQDHSVCYSDCFFYHEKENQSLRYDFSNLSSVGSLMNGPSFTSKGTKYFHFFNISLCGHEGKKSALCTNNITDFTVKETAAGSEDYTNLVGAFVCQSTIIPSESKGFRAALSSQSIILADTFLGVTVETTLQNINIKEDMFPVSPSQIPDVHFFYKSSTTTTSCVNGRSTAVKMRCNPAKQGAGVISVPSKCPAGTCDGCSFYFLWESAEACPLCTEHDFHEIEGACKRGFQETLYVWNEPKWCIKGISLPEKKLSTCETVDFWLKVGAGVGAFTAVLLVALTCYFWKKNQKLEYKYSKLVMTTNSKECELPAADSCAIMEGEDNEEEVVYSNKQSLLGKLKSLATKEKEDHFESVQLKSSRSPNI", "length": 1247, "header": "tr|A0A5G2R441-1|F1SBX6_PIG Computationally mapped isoform of Endosome-lysosome associated apoptosis and autophagy regulator family member 2 OS=Sus scrofa OX=9823 GN=ELAPOR2 PE=1 SV=1 CANONICAL=F1SBX6-1" }, "locus": { "chromosome": "9", "start_pos": 93723356, "end_pos": 93540277, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083959.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083959.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071103.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071103.1" } ] } }, { "isoform_ac": "A0A8D0WV39-1", "url": "https://www.uniprot.org/uniprotkb/F1SBX6/entry#A0A8D0WV39-1", "sequence": { "sequence": "MHSSWVPRGNYIESNRDDCTVSLIYAVHLKKSGYVFFEYQYVDNNIFFEFFIQNDQCQEMDTTADKWVKLTDNGEWGSHSVMLKSGTNILYWRTTGILMGSKAVKPVLVKNITIEGVAYTSECFPCKPGTFSDKPGSFICQVCPRNTYSEKGAKECIKCDEDSQFSEEGSSECTERPPCTMKDYFQIHTPCDEEGKTQIMYKWIEPKICREDLTDAIRLPPSGEKKDCPPCNPGFFNNGSSSCHPCPPGMFSDGTKECRPCPAGTEPALGFEYKWWNVLPGNMKTSCFNVGNSKCDGMNGWEVAGDHIQSGAGGSDNDYLILNLHIPGFKPPTSMTGAMGSELGRITFVFETLCSADCVLYFMVDINRKSTNVVESWGGTKEKQAYTHVIFKNATFTFTWAFQRTNQGQDNRRFINDMVKIYSITATNAVDGVASSCRACALGSEQSGSSCVPCPPGHYIEKETNQCKECPPDTYLSIHQVYGKEACIPCGPGSRSTQDHSVCYSDCFFYHEKENQSLRYDFSNLSSVGSLMNGPSFTSKGTKYFHFFNISLCGHEGKKSALCTNNITDFTVKETAAGSEDYTNLVGAFVCQSTIIPSESKGFRAALSSQSIILADTFLGVTVETTLQNINIKEDMFPVSPSQIPDVHFFYKSSTTTTSCVNGRSTAVKMRCNPAKQGAGVISVPSKCPAGTCDGCSFYFLWESAEACPLCTEHDFHEIEGACKRGFQETLYVWNEPKWCIKGISLPEKKLSTCETVDFWLKVGAGVGAFTAVLLVALTCYFWKKNQKLEYKYSKLVMTTNSKECELPAADSCAIMEGEDNEEEVVYSNKQSLLGKLKSLATKEKEDHFESVQLKSSRSPNI", "length": 862, "header": "tr|A0A8D0WV39-1|F1SBX6_PIG Computationally mapped isoform of Endosome-lysosome associated apoptosis and autophagy regulator family member 2 OS=Sus scrofa OX=9823 GN=ELAPOR2 PE=1 SV=1 CANONICAL=F1SBX6-1" }, "locus": { "chromosome": "9", "start_pos": 93723356, "end_pos": 93637785, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081776.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081776.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073419.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073419.1" } ] } }, { "isoform_ac": "A0A8W4F7H7-1", "url": "https://www.uniprot.org/uniprotkb/F1SBX6/entry#A0A8W4F7H7-1", "sequence": { "sequence": "ISSWVPRGNYIESNRDDCTVSLIYAVHLKKSGYVFFEYQYVDNNIFFEFFIQNDQCQEMDTTADKWVKLTDNGEWGSHSVMLKSGTNILYWRTTGILMGSKAVKPVLVKNITIEGVAYTSECFPCKPGTFSDKPGSFICQVCPRNTYSEKGAKECIKCDEDSQFSEEGSSECTERPPCTMKDYFQIHTPCDEEGKTQIMYKWIEPKICREDLTDAIRLPPSGEKKDCPPCNPGFFNNGSSSCHPCPPGMFSDGTKECRPCPAGTEPALGFEYKWWNVLPGNMKTSCFNVGNSKCDGMNGWEVAGDHIQSGAGGSDNDYLILNLHIPGFKPPTSMTGAMGSELGRITFVFETLCSADCVLYFMVDINRKSTNVVESWGGTKEKQAYTHVIFKNATFTFTWAFQRTNQGQDNRRFINDMVKIYSITATNAVDGVASSCRACALGSEQSGSSCVPCPPGHYIEKETNQCKECPPDTYLSIHQVYGKEACIPCGPGSRSTQDHSVCYSDCFFYHEKENQSLRYDFSNLSSVGSLMNGPSFTSKGTKYFHFFNISLCGHEGKKSALCTNNITDFTVKETAAGSEDYTNLVGAFVCQSTIIPSESKGFRAALSSQSIILADTFLGVTVETTLQNINIKEDMFPVSPSQIPDVHFFYKSSTTTTSCVNGRSTAVKMRCNPAKQGAGVISVPSKCPAGTCDGCSFYFLWESAEACPLCTEHDFHEIEGACKRGFQETLYVWNEPKWCIKGISLPEKKLSTCETVDFWLKVGAGVGAFTAVLLVALTCYFWKKNQKLEYKYSKLVMTTNSKECELPAADSCAIMEGEDNEEEVVYSNKQSLLGKLKSLATKVRAEFYPGVTVLL", "length": 855, "header": "tr|A0A8W4F7H7-1|F1SBX6_PIG Computationally mapped isoform of Endosome-lysosome associated apoptosis and autophagy regulator family member 2 OS=Sus scrofa OX=9823 GN=ELAPOR2 PE=1 SV=1 CANONICAL=F1SBX6-1" }, "locus": { "chromosome": "9", "start_pos": 93713923, "end_pos": 93658160, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098023.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098023.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075221.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075221.1" } ] } }, { "isoform_ac": "F1SBX6-1", "url": "https://www.uniprot.org/uniprotkb/F1SBX6/entry#F1SBX6-1", "sequence": { "sequence": "MYIVLTTTLWVRYFNYFHLIGEKTKSQTALLFHFPRPPPFHANPNNSKIRSNTRQLGSLGRDAPGAHLCDARSKKILKSRRKIMSLCPGFYSGSPHPPEASLPVGQGNWGWETLWGHPGLSRPSPPIEARVPSGRATPHDPRGWAARFPPRPAPPRPHHLLPGSRVPAPRPAPAPRPRPAVPPSGVTGAPAPAAGAASAGELSAGRPAGAERLASRARSPRGPGAGARPTRGGCLPACQLTARSGTEMLLGQGPARGRGRGRRAGSPHCGLLQPWSPAWICCWALAGCQAAWAGDLPSSSSGRPLPPCLEKDYHFEYTECDSSGSRWRVAIPNSAVDCSGLPDPVRGKECTFSCASGEYLEMKNQVCSKCGEGTYSLGSGIKFDEWDELPAGFSNVATFMDTVVGPSDSRPDGCNNSSWVPRGNYIESNRDDCTVSLIYAVHLKKSGYVFFEYQYVDNNIFFEFFIQNDQCQEMDTTADKWVKLTDNGEWGSHSVMLKSGTNILYWRTTGILMGSKAVKPVLVKNITIEGVAYTSECFPCKPGTFSDKPGSFICQVCPRNTYSEKGAKECIKCDEDSQFSEEGSSECTERPPCTMKDYFQIHTPCDEEGKTQIMYKWIEPKICREDLTDAIRLPPSGEKKDCPPCNPGFFNNGSSSCHPCPPGMFSDGTKECRPCPAGTEPALGFEYKWWNVLPGNMKTSCFNVGNSKCDGMNGWEVAGDHIQSGAGGSDNDYLILNLHIPGFKPPTSMTGAMGSELGRITFVFETLCSADCVLYFMVDINRKSTNVVESWGGTKEKQAYTHVIFKNATFTFTWAFQRTNQGQDNRRFINDMVKIYSITATNAVDGVASSCRACALGSEQSGSSCVPCPPGHYIEKETNQCKECPPDTYLSIHQVYGKEACIPCGPGSRSTQDHSVCYSDCFFYHEKENQSLRYDFSNLSSVGSLMNGPSFTSKGTKYFHFFNISLCGHEGKKSALCTNNITDFTVKETAAGSEDYTNLVGAFVCQSTIIPSESKGFRAALSSQSIILADTFLGVTVETTLQNINIKEDMFPVSPSQIPDVHFFYKSSTTTTSCVNGRSTAVKMRCNPAKQGAGVISVPSKCPAGTCDGCSFYFLWESAEACPLCTEHDFHEIEGACKRGFQETLYVWNEPKWCIKGISLPEKKLSTCETVDFWLKVGAGVGAFTAVLLVALTCYFWKKNQKLEYKYSKLVMTTNSKECELPAADSCAIMEGEDNEEEVVYSNKQSLLGKLKSLATKEKEDHFESVQLKSSRSPNI", "length": 1276, "header": "tr|F1SBX6-1|F1SBX6_PIG Isoform 1 of Endosome-lysosome associated apoptosis and autophagy regulator family member 2 OS=Sus scrofa OX=9823 GN=ELAPOR2 PE=1 SV=3 CANONICAL=F1SBX6-1" }, "locus": { "chromosome": "9", "start_pos": 93723356, "end_pos": 93540277, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016769.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016769.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016321.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016321.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., 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"evidence": [ { "database": "UniProtKB", "id": "F1SBX6", "url": "https://www.uniprot.org/uniprotkb/F1SBX6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of BMP signaling pathway", "id": "GO:0030513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030513", "evidence": [ { "database": "UniProtKB", "id": "F1SBX6", "url": "https://www.uniprot.org/uniprotkb/F1SBX6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 415, "end_pos": 417, "annotation": "n_glycosylation_sequon" }, { "start_pos": 416, "end_pos": 418, "annotation": "n_glycosylation_sequon" }, { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" }, { "start_pos": 525, "end_pos": 527, "annotation": "n_glycosylation_sequon" }, { "start_pos": 652, "end_pos": 654, "annotation": "n_glycosylation_sequon" }, { "start_pos": 807, "end_pos": 809, "annotation": "n_glycosylation_sequon" }, { "start_pos": 929, "end_pos": 931, 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S827-1", "url": "https://www.uniprot.org/uniprotkb/F1S827-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLEQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRPNRGIRTDKSSASAPDVDDPEAFPALA", "length": 407, "header": "tr|F1S827-1|F1S827_PIG Isoform 1 of SERPINE1 mRNA binding protein 1 OS=Sus scrofa OX=9823 GN=SERBP1 PE=1 SV=2 CANONICAL=F1S827-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNW1-1", "url": "https://www.uniprot.org/uniprotkb/F1S827/entry#A0A5G2QNW1-1", "sequence": { "sequence": "MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRDGFDSRGKREFDRHSGSDRSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLEQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRPNRGIRTDKVILRPLLPF", "length": 380, "header": "tr|A0A5G2QNW1-1|F1S827_PIG Computationally mapped isoform of SERPINE1 mRNA binding protein 1 OS=Sus scrofa OX=9823 GN=SERBP1 PE=1 SV=2 CANONICAL=F1S827-1" }, "locus": { "chromosome": "6", "start_pos": 145198229, "end_pos": 145186833, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076215.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076215.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066578.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066578.2" } ] } }, { "isoform_ac": "F1S827-1", "url": 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"https://www.ensembl.org/id/ENSSSCP00000004109.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNW1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNW1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A031-1", "protein_name": "SERPINE1 mRNA binding protein 1", "gene_name": "SERBP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLRAAESRRKESGGGGGAQGGGGARGGPAGAQSNSSGGAGGGGPGQAGSGGGAGSAAKQLRRESQKERKNPLPPFAASAGGERREEGGGQPGAPLRKEGIRRIGRRPDQQQQQQQGEGKPIDRRPERRPPRERRFDKPADEKGEGGEFSVDKPILDRPMRGRGGLGRGRGRGRGMGRGDGFDSRGKREFDRHSGSDRSSVSHSHFSGLKHEDKRGGSGSHNWGTVKDELTELDQSAVTEETPEGEEHPPADSENKENEVEEVKEEGPKEMTLDEWKAIQSKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEETKAMTEMQGSLLESNEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRASRGGRTDKLVKEFDVIHTPNQSSASAPDVDDPEAFPALS", "length": 448 }, "evidence": [ { "id": "F1S827", "url": "https://omabrowser.org/oma/group/F1S827/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1Q5Q3-1", "protein_name": "SERPINE1 mRNA-binding protein 1 isoform X1", "gene_name": "serbp1a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPGHLQEGFGCVVTNRFDQLFDDEEDPFEVLKQAEKKKKDATVPGAAKTAAQAAKQPKKESQKERRNPLPDKKEETQAPVPLKKDGMRKMGRRPEQQGQQGSQQQQQQQQVPQQQAGQGEGRPPADRRPDRRPPRERRFDKPADEKPAEGGEFSVEKTMGDRPFRGRGGPRGGRGGRGRGVGRTDGFDSRGKREFDRHSGSDRSSLKAEEKRGGSGSHNWGTVKDELSELDQSNVTEDTPEGEEHPPADSENKENEVEEAKEEGPKEMSLDEWKAQQDKERAKVEFNIRKANEGADWKKGYVLHKSKAEDASADDAAGDHHFRKPANDITSQLEINFGDLGRPGRGRGGPRGGRGGRGAAAATRPPRERRPDKVGGVSVPNVDDPEAFPALA", "length": 392 }, "evidence": [ { "id": "F1S827", "url": "https://omabrowser.org/oma/group/F1S827/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6AXS5-1", "protein_name": "SERPINE1 mRNA-binding protein 1", "gene_name": "Serbp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVADKKEETQPPVALKKEGIRRVGRRPDQQLQGDGKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIERPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLEQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA", "length": 407 }, "evidence": [ { "id": "F1S827", "url": "https://omabrowser.org/oma/group/F1S827/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8NC51-1", "protein_name": "SERPINE1 mRNA-binding protein 1", "gene_name": "SERBP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA", "length": 408 }, "evidence": [ { "id": "F1S827", "url": "https://omabrowser.org/oma/group/F1S827/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CY58-1", "protein_name": "SERPINE1 mRNA-binding protein 1", "gene_name": "Serbp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVADKKEETQPPVALKKEGIRRVGRRPDQQLQGDGKLIDRRAERRPPRERRFEKPLEEKGEGGEFSVDRPIIERPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLDQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA", "length": 407 }, "evidence": [ { "id": "F1S827", "url": "https://omabrowser.org/oma/group/F1S827/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9V426-1", "protein_name": "Vasa intronic gene, isoform D", "gene_name": "vig", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDSAGKNRYELLFMDDDVSDPLDNLVAPTAAAAAAAAGKKKQPSAAAAAATKTTANKVANSNNKANAGSNIGGPNAKKPNQAEKENKPNNALNKTDGKKFTPSADNKQQQFNNNASSNYKQQGAPRQGGGANRTREFGSGQGQGQGQGGQQQRSVNFRQQNGNAETREQRNNRRNVRENVGAPDGQQSRPYRGPGGGPGAGGDRPQRQNRNYDGQNRKREFDRQSGSDRTGVKSIDKRDGAGSHNWGSVKEAIDDVNKNESETNVTNAEGGAKADESGTEPQNEQATAEEEAKELTLDEWKAQQGQRIKPTFNIRKAGEGEDTTQWKKMVVLTSNKKKENDSEEELEYDPALYPQRVGRQQRVLDIQFNFNDGRRGGPGGFGGRGGRGGPRPGGFGGGPRSEGGNRDGGNREGGRDNREGGNRGPRDGQQHNNEGGGSSAQNQRPPIDRRGPGNNQNNNQNSGPGPNKRFERQQNTAPKVNDERQFPTLA", "length": 490 }, "evidence": [ { "id": "F1S827", "url": "https://omabrowser.org/oma/group/F1S827/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1S827", "url": "https://www.uniprot.org/uniprotkb/F1S827" } ], "pmid": "" }, { "name": "translation repressor activity", "id": "GO:0030371", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030371", "evidence": [ { "database": "UniProtKB", "id": "F1S827", "url": "https://www.uniprot.org/uniprotkb/F1S827" } ], "pmid": "" }, { "name": "ribosome binding", "id": "GO:0043022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043022", "evidence": [ { "database": "UniProtKB", "id": "F1S827", "url": "https://www.uniprot.org/uniprotkb/F1S827" } ], "pmid": "" }, { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "F1S827", "url": "https://www.uniprot.org/uniprotkb/F1S827" } ], "pmid": "" }, { "name": "translation elongation factor binding", "id": "GO:0061770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061770", "evidence": [ { "database": "UniProtKB", "id": "F1S827", "url": "https://www.uniprot.org/uniprotkb/F1S827" } ], "pmid": "" }, { "name": "SUMO binding", "id": "GO:0032183", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032183", "evidence": [ { "database": "UniProtKB", "id": "F1S827", "url": "https://www.uniprot.org/uniprotkb/F1S827" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of translation", "id": "GO:0006417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006417", "evidence": [ { "database": "UniProtKB", "id": "F1S827", "url": "https://www.uniprot.org/uniprotkb/F1S827" } ], "pmid": "" }, { "name": "PML body organization", "id": "GO:0030578", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030578", "evidence": [ { "database": "UniProtKB", "id": "F1S827", "url": "https://www.uniprot.org/uniprotkb/F1S827" } ], "pmid": "" }, { "name": "ribosome hibernation", "id": "GO:0141014", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141014", "evidence": [ { "database": "UniProtKB", "id": "F1S827", "url": "https://www.uniprot.org/uniprotkb/F1S827" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S827", "url": "https://www.uniprot.org/uniprotkb/F1S827" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S827", "url": "https://www.uniprot.org/uniprotkb/F1S827" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S827", "url": "https://www.uniprot.org/uniprotkb/F1S827" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 245, "end_pos": 247, "annotation": "n_glycosylation_sequon" }, { "start_pos": 253, "end_pos": 255, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S827", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S827" }, { "id": "SM01233", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01233" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Hyaluronan/mRNA-binding protein", "eco_id": "ECO_0000259", "start_pos": 189, "end_pos": 313, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 245, "end_pos": 247 }, { "start_pos": 253, "end_pos": 255 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SC51-1", "uniprot_ac": "F1SC51", "uniprot_id": "F1SC51_PIG", "mass": { "chemical_mass": 52874.0, "monoisotopic_mass": 52874.0 }, "refseq": {}, "gene_names": [ { "name": "PDLIM1", "type": "recommended", "evidence": [ { "id": "F1SC51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC51" } ] } ], "protein_names": [ { "name": "PDZ and LIM domain 1", "type": "synonym", "evidence": [ { "id": "F1SC51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC51/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SC51", "url": "https://www.uniprot.org/uniprotkb/F1SC51" } ], "common_name": "Pig", 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"Protein Classification" ] }, { "id": "PTHR24214", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24214", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24214:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24214:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15936", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15936", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QRL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRL2-1", "url": 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"MTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRSAMPFTASPASSASPRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRALDHSQLPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTKEVGVSFWGNSLANSFILS", "length": 306, "header": "tr|A0A5G2QRL2-1|F1SC51_PIG Computationally mapped isoform of PDZ and LIM domain 1 OS=Sus scrofa OX=9823 GN=PDLIM1 PE=1 SV=2 CANONICAL=F1SC51-1" }, "locus": { "chromosome": "14", "start_pos": 106793552, "end_pos": 106736128, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071384.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071384.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066707.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066707.2" } ] } }, { "isoform_ac": "A0A8W4FLF5-1", "url": "https://www.uniprot.org/uniprotkb/F1SC51/entry#A0A8W4FLF5-1", "sequence": { "sequence": "MTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRSAMPFTASPASSASPRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRALDHSQLPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVAASIGNAQKLPMCDKCGTGIVFLLKLNRNTWFRFQKEVGVSFWGNSLANSFILS", "length": 301, "header": "tr|A0A8W4FLF5-1|F1SC51_PIG Computationally mapped isoform of PDZ and LIM domain 1 OS=Sus scrofa OX=9823 GN=PDLIM1 PE=1 SV=1 CANONICAL=F1SC51-1" }, "locus": { "chromosome": "14", "start_pos": 106793552, "end_pos": 106736128, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105350.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105350.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080169.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080169.1" } ] } }, { "isoform_ac": "F1SC51-1", "url": "https://www.uniprot.org/uniprotkb/F1SC51/entry#F1SC51-1", "sequence": { "sequence": "MKNGADLKGLTLHSTSKLVLKREALSPPRSPEPAGLSPGACGGAGSAAGWQVGRQGGGAGGRGGAAEISSPHSSPDPTPGFLCLTPGGSPRRARGAGCGCGPREGGRAGRAAGDATWAEPPPPSSRPAPARPRLPGPKPRALFPTAAGEPSAPFCLLPGLSARVAARRHRAMTTQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDVITAIDGENTSNMTHLEAQNKIKGCTDNMTLTVARSEQKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRSAMPFTASPASSASPRIITNQYNNPAGLYSSENISSFNSALESKTAASGQETNGRALDHSQLPSGLVIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPNKPSGFRSVKAPVTKVAASIGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVIPPEGYDVVTVFPK", "length": 500, "header": "tr|F1SC51-1|F1SC51_PIG Isoform 1 of PDZ and LIM domain 1 OS=Sus scrofa OX=9823 GN=PDLIM1 PE=1 SV=4 CANONICAL=F1SC51-1" }, "locus": { "chromosome": "14", "start_pos": 106794065, "end_pos": 106744485, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011481.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011481.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011180.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011180.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 205, "start_aa": "Thr", "end_pos": 205, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr205", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 78, "start_aa": "Thr", "end_pos": 78, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr78", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRL2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRL2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "Z disc", "id": "GO:0030018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030018", "evidence": [ { "database": "UniProtKB", "id": "F1SC51", "url": "https://www.uniprot.org/uniprotkb/F1SC51" } ], "pmid": "" }, { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1SC51", "url": "https://www.uniprot.org/uniprotkb/F1SC51" } ], "pmid": "" }, { "name": "stress fiber", "id": "GO:0001725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001725", "evidence": [ { "database": "UniProtKB", "id": "F1SC51", "url": "https://www.uniprot.org/uniprotkb/F1SC51" } ], "pmid": "" }, { "name": "filamentous actin", "id": "GO:0031941", "url": 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[9823]" } ], "gene": [ { "name": "SDCBP2", "url": "https://www.uniprot.org/uniprotkb/F1S878", "locus": { "chromosome": "17", "start_pos": 33985964, "end_pos": 33961617, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007189", "url": "https://www.ensembl.org/id/ENSSSCG00000007189" } ] } } ], "crossref": [ { "id": "F1S878", "url": "https://alphafold.ebi.ac.uk/entry/F1S878", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007189", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007189", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06721", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06721", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06794", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06794", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513633", "url": "https://www.ncbi.nlm.nih.gov/gene/100513633", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051230", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051230", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HIGFVIK", "url": "https://omabrowser.org/oma/group/HIGFVIK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S878", "url": "https://www.orthodb.org/?gene=F1S878", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12345", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12345", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12345:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12345:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013840650", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840650", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QRN9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRN9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRN9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S878", "url": "https://www.uniprot.org/uniprotkb/F1S878", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S878-1", "url": "https://www.uniprot.org/uniprotkb/F1S878-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTLYPSLEDLKVDQAMQAQARVVPRMPALPVPEHDSRPPVLYPNLAELENYMGLSLSSQEVQQNLPQIPEGARAAVSGSSPGQLVAPVSGNSLGVLRAEIKPGVREIHLCKDDRGKTGLRLRAIDKGVFVQLVQANTPASLVGLRFGDQILQIDGRDCAGWSTDKAHRAVKKASAEKIVMIVRDRPFQRTVTMHKDSTGHVGFVIKKGKVISLVKGSSAARNGLLTNHYVCEVNGQNVIGLKDKEVTEILATAGNVITLTIIPTVIYEHMVKKLSPTLLHHTMDHSIPDV", "length": 291, "header": "tr|F1S878-1|F1S878_PIG Isoform 1 of Syndecan binding protein 2 OS=Sus scrofa OX=9823 GN=SDCBP2 PE=4 SV=1 CANONICAL=F1S878-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRN9-1", "url": "https://www.uniprot.org/uniprotkb/F1S878/entry#A0A5G2QRN9-1", "sequence": { "sequence": "MSTLYPSLEDLKVDQAMQAQARVVPRMPALPVQNMSRPPVLYPNLAELENYMGLSLSSQEVQQNLPQIPEGARAAVSGSSPGQLVAPVSGNSLGVLRAEIKPGVREIHLCKDDRGKTGLRLRAIDKGVFVQLVQANTPASLVGLRFGDQILQIDGRDCAGWSTDKAHRAVKKASAEKIVMIVRDRPFQRTVTMHKDSTGHVGFVIKKGKVISLVKGSSAARNGLLTNHYVCEVNGQNVIGLKDKEVTEILATAGNVITLTIIPTVIYEHMVKKLSPTLLHHTMDHSIPDV", "length": 290, "header": "tr|A0A5G2QRN9-1|F1S878_PIG Computationally mapped isoform of Syndecan binding protein 2 OS=Sus scrofa OX=9823 GN=SDCBP2 PE=4 SV=1 CANONICAL=F1S878-1" }, "locus": { "chromosome": "17", "start_pos": 33985518, "end_pos": 33977349, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088565.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088565.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067434.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067434.1" } ] } }, { "isoform_ac": "F1S878-1", "url": "https://www.uniprot.org/uniprotkb/F1S878/entry#F1S878-1", "sequence": { "sequence": "MSTLYPSLEDLKVDQAMQAQARVVPRMPALPVPEHDSRPPVLYPNLAELENYMGLSLSSQEVQQNLPQIPEGARAAVSGSSPGQLVAPVSGNSLGVLRAEIKPGVREIHLCKDDRGKTGLRLRAIDKGVFVQLVQANTPASLVGLRFGDQILQIDGRDCAGWSTDKAHRAVKKASAEKIVMIVRDRPFQRTVTMHKDSTGHVGFVIKKGKVISLVKGSSAARNGLLTNHYVCEVNGQNVIGLKDKEVTEILATAGNVITLTIIPTVIYEHMVKKLSPTLLHHTMDHSIPDV", "length": 291, "header": "tr|F1S878-1|F1S878_PIG Isoform 1 of Syndecan binding protein 2 OS=Sus scrofa OX=9823 GN=SDCBP2 PE=4 SV=1 CANONICAL=F1S878-1" }, "locus": { "chromosome": "17", "start_pos": 33985518, "end_pos": 33977349, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007866.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007866.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007655.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007655.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRN9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRN9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2L9J0-1", "protein_name": "Syntenin-2 isoform X1", "gene_name": "Sdcbp2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSVLYPSLEDLKVGQVIQAQARASPRLSPPSAPIASAPPLSELYPNLAELESYMGLSLSSQEVQKSLPQIPDGDNMVVTSPGPGHVVAPVSGNNLGVLRAEIKPGVREIHLCKDERGKTGLRLQAVDKGLFVQLVQANTPASLVGLRFGDQILQIDGCDCAGWSTYKAHKALKKASAEKITMIVRDRPFQRTVTMHKDSSGQVGFFIKKGKIVSVVKGSSAARNGLLTNHYVCEVNGQNVIGLKDKKITEILTTAGNVITLTLIPTVIYEHMVKKLSPLLLHHTMDHSIPDI", "length": 292 }, "evidence": [ { "id": "F1S878", "url": "https://omabrowser.org/oma/group/F1S878/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q99JZ0-1", "protein_name": "Syntenin-2", "gene_name": "Sdcbp2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVLYPSLEDLKVGQVIQAQGRASPTMPTLPAPMASAPPLSELYPNLAELESYMGLSLSSQEVQKNLTQIPDSDNMVVTSPGPGQVVAPVSGNNLGILRAEIKPGVREIHLCKDERGKTGLRLQAVDKGLFVQLVQANTPASLVGLRFGDQILQIDGCDCAGWNTHKAHKVLKKASAEKIVMVIRDRPFQRTVTMHKDSSGQVGFSIKKGKIVSVVKGSSAARNGLLTNHYVCEVNGQNVIGLKDKKVTEILTTAGDVITLTIIPTVIYEHMIKRLSPLLLHHTMDHSIPDT", "length": 292 }, "evidence": [ { "id": "F1S878", "url": "https://omabrowser.org/oma/group/F1S878/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H190-1", "protein_name": "Syntenin-2", "gene_name": "SDCBP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSLYPSLEDLKVDQAIQAQVRASPKMPALPVQATAISPPPVLYPNLAELENYMGLSLSSQEVQESLLQIPEGDSTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA", "length": 292 }, "evidence": [ { "id": "F1S878", "url": "https://omabrowser.org/oma/group/F1S878/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S878", "url": "https://www.uniprot.org/uniprotkb/F1S878" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S878", "url": "https://www.uniprot.org/uniprotkb/F1S878" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S878", "url": "https://www.uniprot.org/uniprotkb/F1S878" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1S878", "url": "https://www.uniprot.org/uniprotkb/F1S878" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S878", "url": "https://www.uniprot.org/uniprotkb/F1S878" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1S878", "url": "https://www.uniprot.org/uniprotkb/F1S878" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "F1S878", "url": "https://www.uniprot.org/uniprotkb/F1S878" } ], "pmid": "" }, { "name": "phosphatidylinositol-4,5-bisphosphate binding", "id": "GO:0005546", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005546", "evidence": [ { "database": "UniProtKB", "id": "F1S878", "url": "https://www.uniprot.org/uniprotkb/F1S878" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1S878", "url": "https://www.uniprot.org/uniprotkb/F1S878" } ], "pmid": "" }, { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "F1S878", "url": "https://www.uniprot.org/uniprotkb/F1S878" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell population proliferation", "id": "GO:0008283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008283", "evidence": [ { "database": "UniProtKB", "id": "F1S878", "url": "https://www.uniprot.org/uniprotkb/F1S878" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S878-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 291, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S878-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S878" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S878", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S878" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 107, "end_pos": 186, "start_aa": "Glu", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SAF7-1", "uniprot_ac": "F1SAF7", "uniprot_id": "F1SAF7_PIG", "mass": { "chemical_mass": 61307.0, "monoisotopic_mass": 61307.0 }, "refseq": { "ac": "XP_003129989", "name": "membrane frizzled-related protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129989" }, "gene_names": [ { "name": "MFRP", "type": "recommended", "evidence": [ { "id": "F1SAF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAF7" } ] }, { "name": "MFRP", "type": "synonym", "evidence": [ { "id": "XP_003129989", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129989" } ] } ], "protein_names": [ { "name": "Membrane frizzled-related protein", "type": "synonym", "evidence": [ { "id": "F1SAF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAF7/entry#names_and_taxonomy" } ] }, { "name": "membrane frizzled-related protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003129989", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129989" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAF7", "url": "https://www.uniprot.org/uniprotkb/F1SAF7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MFRP", "url": "https://www.uniprot.org/uniprotkb/F1SAF7", "locus": { "chromosome": "9", "start_pos": 46550315, "end_pos": 46556077, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015119", "url": "https://www.ensembl.org/id/ENSSSCG00000015119" } ] } } ], "crossref": [ { "id": "F1SAF7", "url": "https://alphafold.ebi.ac.uk/entry/F1SAF7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015119", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015119", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00041", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00041", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00112", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00112", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd07066", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07066", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520397", "url": "https://www.ncbi.nlm.nih.gov/gene/100520397", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020067", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020067", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023415", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023415", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036790", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036790", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520397", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520397", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WMCDLWR", "url": "https://omabrowser.org/oma/group/WMCDLWR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAF7", "url": "https://www.orthodb.org/?gene=F1SAF7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24251", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24251", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24251:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24251:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00057", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00057", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00431", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00431", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01392", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01392", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129989", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129989", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QTB8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTB8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAF7", "url": "https://www.uniprot.org/uniprotkb/F1SAF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAF7-1", "url": "https://www.uniprot.org/uniprotkb/F1SAF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKDCSDIILCVETTELSKTEFCNPAFEPESGLPRPPPAFREDPSGRFRAPWHGQRPRGLQPDCRFSWLCVLLLASLLLLLLGLLVAIILAQLQAASPSEAAFHLPPSRGFTTTGAPKGQLEAGMSPTPQSTCGGLLPGPRGFFNSPNYPDPYPPNTYCVWHIQVATDHAIQLKIEALSIEGVASCLFDRLEISPEPEGPLLRVCGRVPPPTLNTNASHLQVAFVSDSSVEGSGFHAWYQAVAPGHGSCAHDEFPCDQLVCLLPDSVCDGFANCADGSDETNCSAKFSGCGGNLTGLQGMLSAPIYLQQYPHHQLCTWHISVPAGHGIELQFHNFSLDTQDACKFDYVEVYETSNSGALSLLGRFCGAEPPPQRLISSYHQLAVLFRTDHGISGGGFSATYQALNATEKPCGPGELSCRDAGCKSLQWMCGLWRDCAESSGDNCSSPLFPPPELACEPVQVEMCIGLSYNTTAFPNIWVGMATQEEVVELLRGYKSLTSLPCYQNFRRLLCGLLVPHCTPLGSVLPPCRSVCQEAERQCQSGLALLGTPWPFNCNRLPEAAGLESCAQP", "length": 568, "header": "tr|F1SAF7-1|F1SAF7_PIG Isoform 1 of Membrane frizzled-related protein OS=Sus scrofa OX=9823 GN=MFRP PE=4 SV=1 CANONICAL=F1SAF7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTB8-1", "url": "https://www.uniprot.org/uniprotkb/F1SAF7/entry#A0A5G2QTB8-1", "sequence": { "sequence": "MKDCSDIILCVETTELSKTEFCNPAFEPESGLPRPPPAFREDPSGRFRAPWHGQRPRGLQPDCRFSWLCVLLLASLLLLLLGLLVAIILAQLQAASPSEAAFHLPPSRGFTTTGAPKGQLEAGMSPTPQSTCGGLLPGPRGFFNSPNYPDPYPPNTYCVWHIQVATDHAIQLKIEALSIEGVASCLFDRLEISPEPEGPLLRVCGRVPPPTLNTNASHLQVAFVSDSSVEGSGFHAWYQAVAPGHGSCAHDEFPCDQLVCLLPDSVCDGFANCADGSDETNCSAKFSGSVEQNRHPSASSPRTTSWLSFLGQIMASAVGASRPPTRPSMPQRSPVDLESSPAGMQGVRVCSGCVVYGETVQRAVVTTAAAPCSHPQSLTSLPCYQNFRRLLCGLLVPHCTPLGSVLPPCRSVCQEAERQCQSGLALLGTPWPFNCNRLPEAAGLESCAQP", "length": 450, "header": "tr|A0A5G2QTB8-1|F1SAF7_PIG Computationally mapped isoform of Membrane frizzled-related protein OS=Sus scrofa OX=9823 GN=MFRP PE=4 SV=1 CANONICAL=F1SAF7-1" }, "locus": { "chromosome": "9", "start_pos": 46555969, "end_pos": 46550840, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087998.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087998.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068078.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068078.1" } ] } }, { "isoform_ac": "F1SAF7-1", "url": "https://www.uniprot.org/uniprotkb/F1SAF7/entry#F1SAF7-1", "sequence": { "sequence": "MKDCSDIILCVETTELSKTEFCNPAFEPESGLPRPPPAFREDPSGRFRAPWHGQRPRGLQPDCRFSWLCVLLLASLLLLLLGLLVAIILAQLQAASPSEAAFHLPPSRGFTTTGAPKGQLEAGMSPTPQSTCGGLLPGPRGFFNSPNYPDPYPPNTYCVWHIQVATDHAIQLKIEALSIEGVASCLFDRLEISPEPEGPLLRVCGRVPPPTLNTNASHLQVAFVSDSSVEGSGFHAWYQAVAPGHGSCAHDEFPCDQLVCLLPDSVCDGFANCADGSDETNCSAKFSGCGGNLTGLQGMLSAPIYLQQYPHHQLCTWHISVPAGHGIELQFHNFSLDTQDACKFDYVEVYETSNSGALSLLGRFCGAEPPPQRLISSYHQLAVLFRTDHGISGGGFSATYQALNATEKPCGPGELSCRDAGCKSLQWMCGLWRDCAESSGDNCSSPLFPPPELACEPVQVEMCIGLSYNTTAFPNIWVGMATQEEVVELLRGYKSLTSLPCYQNFRRLLCGLLVPHCTPLGSVLPPCRSVCQEAERQCQSGLALLGTPWPFNCNRLPEAAGLESCAQP", "length": 568, "header": "tr|F1SAF7-1|F1SAF7_PIG Isoform 1 of Membrane frizzled-related protein OS=Sus scrofa OX=9823 GN=MFRP PE=4 SV=1 CANONICAL=F1SAF7-1" }, "locus": { "chromosome": "9", "start_pos": 46555969, "end_pos": 46550840, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016485.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016485.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016042.1", "url": "https://www.ensembl.org/id/ENSSSCP00000016042.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 127, "start_aa": "Thr", "end_pos": 127, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr127", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTB8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTB8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520397", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520397", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2ME18-1", "protein_name": "Membrane frizzled-related protein", "gene_name": "Mfrp", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKDYSDVILCPEANELSKTEFCNPAFDPEAGPSCPAPALQKNASSSLKAPWHAQHLRRLQPDCHFSWLCILLLSGLLVLLLGLLVAIILAQFQATSLPRTTQSPLPTRGLAPKGGISSTTPNARTTTTTTSPATTQQQEVAMSPTHQITCGGLLHGPRGFFSSPNYPDLYPPHSHCVWHIQVATGQTIQLKIQALSIEGVPACLFDRLEIAPEPSGSLLRVCGKTPPATLNTNASHLRVSFVSDDDVEGSGFQAWYQAVAPGHWSCAQNEFRCDELLCLKHDLVCDGITNCADGSDEANCSAKNLGCGGNLTGLHGVFSTPNYPQHYPHQQLCTWYISVPMEYGIELQFHNFSLEAQAECKFDYVEVYEASSSRAFSFLGRFCGAKPPAPLISSQHQLAVIFKTDLGISSGGFLATYQAINTSESRCPWAEFSQDGGCWDLQWMCDLWRDCANDSNDNNCSSHLFPQTEPACEPVQVEMCLGLSYNTTAFPNIWVGLGTQSEVVDILRGYKSLTSLPCYQNFRRFLCGLLVPHCTPLGTVLPPCRSVCQEAEQQCQSSLALLGTPWPFNCNRLPEAASLEACSQP", "length": 585 }, "evidence": [ { "id": "F1SAF7", "url": "https://omabrowser.org/oma/group/F1SAF7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZU82-1", "protein_name": "Membrane frizzled-related protein", "gene_name": "Mfrp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKEYADVTLCPEAAELSKTEFCNPAFDLEAGPSCPPPALQKNVSSSLQGPWHVQRLRGLQPDCHFSGLCILLLSGLLLLLLGLLVAVILAQLQATSLPRTTKNPLPTRGGLTPTGVIPSTTPNTTTTTTTTPAITGRQEAAMSPTHQTTCGGLLPGPSGFFSSPNYPDLYPPHSHCVWHIQVATGQTIQLKIQVLSTESMLACLFDRLEISPAPTGPLLRMCGKTPPATVNTNTSHLRVSFVSDNDVEGSGFQAWYQAVAPGHWSCTHYEFHCDLLLCLKQDSVCDGIKDCIDGSDEANCSAKTLGCGGNLTELSGVFSTPNYPQHYPHQQLCTWYIKVPVGYRIRLEFHNFSLEEQTECKFDYVEVYEASNSGTFSSLGRFCGAEPPSHLVSSQHQLTVIFKTDLGISSGGFLATYQAINTTESGCPWADLCGPREFCQSRVRRELQRICDLWKDCANDSNDNCNSHLSPQLDLTCEPVQVEMCLGLSYNTTAFPNIWVGLATQMESLTSLPCYQTFRRFLCGLLEPRCTSLGTILPPCRSVCQEAEQQCQSSLALLGIPWPFNCNRLPVPASLEACSQP", "length": 581 }, "evidence": [ { "id": "F1SAF7", "url": "https://omabrowser.org/oma/group/F1SAF7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1B8U4-1", "protein_name": "Membrane frizzled-related protein", "gene_name": "MFRP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKDCSDIVLCVETTELSKTEFCNPAFEPESGPPCPFPALREDADCSAPAPWHGRHPRRLQPDCRFSWLCVLLLAGLLLLLLGLLVAIILAQLQATTSPGATYHPLPSRGLATTGTTPATSTTTSQATGTPKGQPEAGVSLAPQSACGGLLPGPRGFFSSPNYPDPYPPNAHCVWHIQVATDHTIQLKIETLSTESVASCLFDRLEISPEPEGPLLRVCGRVPPPTLNTNASRLRVAFVSDSSVEGSGFHAWYQAVAPGHGSCAHEEFPCDQFVCLLRDSVCDGFANCADGSDEINCSAKFSGCGGNLTGLEGTFSAPSYLQQYPHQQLCTWHISVPAGHGIELLFHNFSLEAQDECKSDYVEVYEAHSSGALSLLDRFCGAEPPPRLISSRHQLAVLFRTDHGFSAGGFSATYRALNATESPCRPGELSCQDGGCKSPQWMCSTWRDCADDNCSSPLFPPPELACEPVQVEMCIGLSYNTTAFPNIWVGMTTQEEVVEVLRGYKSLTSLPCYQNFRRLLCGLLVPHCTPLGSVLPPCRSVCQEAERQCQSGLALLGTPWPFNCNRLPEAAGLEACAQP", "length": 578 }, "evidence": [ { "id": "F1SAF7", "url": "https://omabrowser.org/oma/group/F1SAF7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8K480-1", "protein_name": "Membrane frizzled-related protein", "gene_name": "Mfrp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKDYDDVILRPEASELSKTEFCNPAFDPEAGPSCPPPALQRDVGSRLQAPWHAQRLRGLQPDCHFSWFCILLLSGLLLLLLGLLVAVILAQLQATSLPRTTKNPLLTRGLTPMGVIPSTTPNTTTTTTTTTPARTGQQEAAMSPTHQTTCGGLLPGPSGFFSSPNYPDLYPPLSHCVWHIQVAAGQTIQLKIQALSIESMLTCLFDRLEIISEPTGPLLRVCGKTPPATLNTNTSHLRVSFVSDNDVEGSGFQAWYQAVAPGHWSCAHNEFHCDLLLCLKRDSVCDGITECADGSDEANCSAKTLGCGGNLTGLYGVFSTPNYPQHYPHQQLCTWYIEVPVGYGIRLEFHNFSLEAQAECKFDYVEVYEASNLGTFSFLGRFCGAEPPLNVVSSMHQLAVIFKTDLGISSGGFLATYQAINTTESGCPWAEFCQSGGYRDLQWMCDLWKDCANDSNDNCSSHLSPQPDLTCEPVQVEMCLGLSYNTTAFPNIWVGLATQTEVTDILRGYKSLTSLPCYQTFQRFLCGLLVPRCTSLGTILPPCRSVCQAAEQQCQSSLALLGTPWPFNCNRLPVAASLEACSQP", "length": 584 }, "evidence": [ { "id": "F1SAF7", "url": "https://omabrowser.org/oma/group/F1SAF7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BY79-1", "protein_name": "Membrane frizzled-related protein", "gene_name": "MFRP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKDFSDVILCMEATESSKTEFCNPAFEPESGPPCPPPVFPEDASYSVPAPWHGRRPRGLRPDCRFSWLCVLLLSSLLLLLLGLLVAIILAQLQAAPPSGASHSPLPAGGLTTTTTTPTITTSQAAGTPKGQQESGVSPSPQSTCGGLLSGPRGFFSSPNYPDPYPPNTHCVWHIQVATDHAIQLKIEALSIESVASCLFDRLELSPEPEGPLLRVCGRVPPPTLNTNASHLLVVFVSDSSVEGFGFHAWYQAMAPGRGSCAHDEFRCDQLICLLPDSVCDGFANCADGSDETNCSAKFSGCGGNLTGLQGTFSTPSYLQQYPHQLLCTWHISVPAGHSIELQFHNFSLEAQDECKFDYVEVYETSSSGAFSLLGRFCGAEPPPHLVSSHHELAVLFRTDHGISSGGFSATYLAFNATENPCGPSELSCQAGGCKGVQWMCDMWRDCTDGSDDNCSGPLFPPPELACEPVQVEMCLGLSYNTTAFPNIWVGMITQEEVVEVLSGYKSLTSLPCYQHFRRLLCGLLVPRCTPLGSVLPPCRSVCQEAEHQCQSGLALLGTPWPFNCNRLPEAADLEACAQP", "length": 579 }, "evidence": [ { "id": "F1SAF7", "url": "https://omabrowser.org/oma/group/F1SAF7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SAF7", "url": "https://www.uniprot.org/uniprotkb/F1SAF7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 281, "end_pos": 283, "annotation": "n_glycosylation_sequon" }, { "start_pos": 292, "end_pos": 294, "annotation": "n_glycosylation_sequon" }, { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" }, { "start_pos": 404, "end_pos": 406, "annotation": "n_glycosylation_sequon" }, { "start_pos": 442, "end_pos": 444, "annotation": "n_glycosylation_sequon" }, { "start_pos": 469, "end_pos": 471, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAF7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 568, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAF7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAF7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAF7" }, { "id": "PS01180", "database": "PROSITE", "url": "https://prosite.expasy.org/PS01180" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CUB", "eco_id": "ECO_0000259", "start_pos": 132, "end_pos": 241, "start_aa": "Cys", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SAF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAF7" }, { "id": "PS50038", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50038" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FZ", "eco_id": "ECO_0000259", "start_pos": 450, "end_pos": 568, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 127 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 215, "end_pos": 217 }, { "start_pos": 281, "end_pos": 283 }, { "start_pos": 292, "end_pos": 294 }, { "start_pos": 333, "end_pos": 335 }, { "start_pos": 404, "end_pos": 406 }, { "start_pos": 442, "end_pos": 444 }, { "start_pos": 469, "end_pos": 471 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"https://www.ensembl.org/id/ENSSSCG00000003699" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003699", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003699", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR028422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046927", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046927", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048657", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048657", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048659", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048659", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049100", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049100", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15720", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15720", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15720:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15720:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15782", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15782", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20267", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20267", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20688", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20688", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20691", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20691", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20692", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20692", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QXD0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXD0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBC3", "url": "https://www.uniprot.org/uniprotkb/F1SBC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBC3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBC3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNSYAGQLKSARFEEALHNSIEASLRCSSVVPRPIFSQLYLDPDQHSFSSADVKPKVEDLDKDLVHRYTQNGSLDFSNNLTVNEMEDDEDDEEMSDSNSPPIPYSQKPAPEGSCTTDGFCQAGKDLRLVSLCMEQIDIPAGFLLVGAKSPNLPEHILVCAVDKRFLPDDHGKNALLGFSGNCIGCGERGFRYFTEFSNHINLKLTTQPKKQKHLKYYLVRSSQGVLSKGPLICWKECRSRQSSTTCHSIKPNSSVSSSVTPENGTTNGYKSGFIQTDAANGNSSHGGKSSASGSTPARPGSYSLSPRPSFASGDQATMFISGPPKKRHRGWYPGSPVPQPGLVVPIPTVRPLSRTESLLSAPVPQTPLTGILQPRPIPAGETVIVPENLLSNSGVRPVILIGYGTLPYFYGNVGDIVVSPLLVNCYKIPQLENKDLEQLGLTGSQLLSVENMILLTIQYLVRLGPDQIPLREEFEQIMLKAMQEFTLRERALQMGAQCTPVSPGQLPWLARLIASVSQDLVHVIVTQNSLAEGISETLRTLSEMRHYQKLPDYVVTICASKIRGNEFCVVVLGQHQSRALAESMLTTSEFLKEISYELITGKVSFLASHFKTTSLGDDLDKLLEKMQQRRGDSVVTPFNGDLNECVSPQEAAAMIPTQNLDSDNETFQIYQPQLTVARKLLSQVCAIADSGSQSLDLGHFSKVDFIIIVPRSEVLVQQTLQRIRQSGVLVDLGLEENGTAYQRAEKYVVRLDNEIQTKFEVFMRRVKQNPYTLFVLVHDNSHVELTSVISGSLSHGEPGHGLADRVINCREVLEAFNLLVLQVTSCPYTLQTQQSRISTSNEVHWIQLDSTEDMNGEEKLYFGLNEYSKSLQWGITSPLLRCDETFEKMVNTLLERYPRLHSMVVRCYLLIQQYSEALMALTTMASLRDHSTPETLSIMDDLLSSPGKNKSGKGHMLILRVPSVQLAMLAKERLQEVRDKLGLQYRFEIILGNPASELSVATHFVTRLKTWRGNEAEEWIPRTYQDLEGLPCIVILTGKDPLGETFPRSLKYCDLRLIDSSYLTRTALEQEVGLACCYVSKEVVRGPTAALDLSSKEQERATASENDAEELLIDLERPQSNSSAVTGTSGSIMENGVSSSSTADKSQKQPPTPSFQSPGNSAGLDEGVSAGIAEPLKQECDSLGPPMASSTTSKPSSSSSGPRTLRWPGPPAALPPIVILSKAAYSLLGSPRAGRLPASAALLPHADVAWVSSLRPLPPRQAGGEEQSRYYRQWTSARPHADYSNQPDPGSGTRACHPRRLLLSGPPQVGKTGSYLQFLRILFRMLIRLLEVDVYDEGEINADHSESSEVSQSEGEPWPDIESFSKIPFDVSVHDPKYRLMSLVYTEKLAGVKREAIKESKVEEPRKRETVSMMLTKYAAYNTFHHCEQCHQYMDFTSASQMSDSTLHAFTFSSSMLGEEVQLYFIIPKSKESHFVFSKQGKHLESMRLPLVSDKNLNAVKSPIFTPSSGRHEHGLLNLFHAMEGISHLHLLVVKEYEMPLYRKYWPNHIMLVLPGMFNNAGVGAARFLIKELSYHNLELERNRLEELGIKRQCVWPFIVVMDDSCVLWNIHSVEEQSGQPVETGVSSKNVSLKSVLQHIEATPKIIHYAILGIQKWSSKLTSQSLKSPFSRCHVHDFILLNIDLTQNVQYDFKYFCEDVDFNLRTNSSGLLICRFNNFSLMKKQVQVGGQRDFIIKPKIMVSESLAPILPLQYVCAPDSEHTLLAAPAQFLLEKFLQHASYKLFPKAIQNFRSPVLAIDCYLNIGPEVAICYVSSRPHSSNVNCEGVCFSGLLLYLCDSFVGADLLKKFKFLKGATLCVICQDRSSLRQTIVRLELEDEWQFRLRDEFQTANSNDDKPLYFLTGRHV", "length": 1909, "header": "tr|F1SBC3-1|F1SBC3_PIG Isoform 1 of GREB1 like retinoic acid receptor coactivator OS=Sus scrofa OX=9823 GN=GREB1L PE=3 SV=4 CANONICAL=F1SBC3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXD0-1", "url": "https://www.uniprot.org/uniprotkb/F1SBC3/entry#A0A5G2QXD0-1", "sequence": { "sequence": "MGNSYAGQLKSARFEEALHNSIEASLRCSSVVPRPIFSQLYLDPDQHSFSSADVKPKVEDLDKDLVHRYTQNGSLDFSNNLTVNEMEDDEDDEEMSDSNSPPIPYSQKPAPEGSCTTDGFCQAGKDLRLVSLCMEQIDIPAGFLLVGAKSPNLPEHILVCAVDKRFLPDDHGKNALLGFSGNCIGCGERGFRYFTEFSNHINLKLTTQPKKQKHLKYYLVRSSQGVLSKGPLICWKECRSRQSSTTCHSIKPNSSVSSSVTPENGTTNGYKSGFIQTDAANGNSSHGGKSSASGSTPARPGSYSLSPRPSFASGDQATMFISGPPKKRHRGWYPGSPVPQPGLVVPIPTVRPLSRTESLLSAPVPQTPLTGILQPRPIPAGETVIVPENLLSNSGVRPVILIGYGTLPYFYGNVGDIVVSPLLVNCYKIPQLENKDLEQLGLTGSQLLSVENMILLTIQYLVRLGQHQSRALAESMLTTSEFLKEISYELITGKVSFLASHFKTTSLGDDLDKLLEKMQQRRGDSVVTPFNGDLNECVSPQEAAAMIPTQNLDSDNETFQIYQPQLTVARKLLSQVCAIADSGSQSLDLGHFSKVDFIIIVPRSEVLVQQTLQRIRQSGVLVDLGLEENGTAYQRAEKYVVRLDNEIQTKFEVFMRRVKQNPYTLFVLVHDNSHVELTSVISGSLSHGEPGHGLADRVINCREVLEAFNLLVLQVTSCPYTLQTQQSRISTSNEVHWIQLDSTEDMNGEEKLYFGLNEYSKSLQWGITSPLLRCDETFEKMVNTLLERYPRLHSMVVRCYLLIQQYSEALMALTTMASLRDHSTPETLSIMDDLLSSPGKNKSGKGHMLILRVPSVQLAMLAKERLQEVRDKLGLQYRFEIILGNPASELSVATHFVTRLKTWRGNEAEEWIPRTYQDLEGLPCIVILTGKDPLGETFPRSLKYCDLRLIDSSYLTRTALEQEVGLACCYVSKEVVRGPTAALDLSSKEQERATASENDAEELLIDLERPQSNSSAVTGTSGSIMENGVSSSSTADKSQKQPPTPSFQSPGNSAGLDEGVSAGIAEPLKQECDSLGPPMASSTTSKPSSSSSGPRTLRWPGPPAALPPIVILSKAAYSLLGSPRAGRLPASAALLPHADVAWVSSLRPLPPRQAGGEEQSRYYRQWTSARPHADYSNQPDPGSGTRACHPRRLLLSGPPQVGKTGSYLQFLRILFRMLIRLLEVDVYDEGEINADHSESSEVSQSEGEPWPDIESFSKIPFDVSVHDPKYRLMSLVYTEKLAGVKREAIKESKVEEPRKRETVSMMLTKYAAYNTFHHCEQCHQYMDFTSASQMSDSTLHAFTFSSSMLGEEVQLYFIIPKSKESHFVFSKQGKHLESMRLPLVSDKNLNAVKSPIFTPSSGRHEHGLLNLFHAMEGISHLHLLVVKEYEMPLYRKYWPNHIMLVLPGMFNNAGVGAARFLIKELSYHNLELERNRLEELGIKRQCVWPFIVVMDDSCVLWNIHSVEEQSGQPVETGVSSKNVSLKSVLQHIEATPKIIHYAILGIQKWSSKLTSQSLKSPFSRCHVHDFILLNIDLTQNVQYDFKYFCEDVDFNLRTNSSGLLICRFNNFSLMKKQVQVGGQRDFIIKPKIMVSESLAPILPLQYVCAPDSEHTLLAAPAQFLLEKFLQHASYKLFPKAIQNFRSPVLAIDCYLNIGPEVAICYVSSRPHSSNVNCEGVCFSGLLLYLCDSFVGADLLKKFKFLKGATLCVICQDRSSLRQTIVRLELEDEWQFRLRDEFQTANSNDDKPLYFLTGRHV", "length": 1800, "header": "tr|A0A5G2QXD0-1|F1SBC3_PIG Computationally mapped isoform of GREB1 like retinoic acid receptor coactivator OS=Sus scrofa OX=9823 GN=GREB1L PE=3 SV=1 CANONICAL=F1SBC3-1" }, "locus": { "chromosome": "6", "start_pos": 106691124, "end_pos": 106566595, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078837.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078837.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069531.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069531.1" } ] } }, { "isoform_ac": "F1SBC3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBC3/entry#F1SBC3-1", "sequence": { "sequence": "MGNSYAGQLKSARFEEALHNSIEASLRCSSVVPRPIFSQLYLDPDQHSFSSADVKPKVEDLDKDLVHRYTQNGSLDFSNNLTVNEMEDDEDDEEMSDSNSPPIPYSQKPAPEGSCTTDGFCQAGKDLRLVSLCMEQIDIPAGFLLVGAKSPNLPEHILVCAVDKRFLPDDHGKNALLGFSGNCIGCGERGFRYFTEFSNHINLKLTTQPKKQKHLKYYLVRSSQGVLSKGPLICWKECRSRQSSTTCHSIKPNSSVSSSVTPENGTTNGYKSGFIQTDAANGNSSHGGKSSASGSTPARPGSYSLSPRPSFASGDQATMFISGPPKKRHRGWYPGSPVPQPGLVVPIPTVRPLSRTESLLSAPVPQTPLTGILQPRPIPAGETVIVPENLLSNSGVRPVILIGYGTLPYFYGNVGDIVVSPLLVNCYKIPQLENKDLEQLGLTGSQLLSVENMILLTIQYLVRLGPDQIPLREEFEQIMLKAMQEFTLRERALQMGAQCTPVSPGQLPWLARLIASVSQDLVHVIVTQNSLAEGISETLRTLSEMRHYQKLPDYVVTICASKIRGNEFCVVVLGQHQSRALAESMLTTSEFLKEISYELITGKVSFLASHFKTTSLGDDLDKLLEKMQQRRGDSVVTPFNGDLNECVSPQEAAAMIPTQNLDSDNETFQIYQPQLTVARKLLSQVCAIADSGSQSLDLGHFSKVDFIIIVPRSEVLVQQTLQRIRQSGVLVDLGLEENGTAYQRAEKYVVRLDNEIQTKFEVFMRRVKQNPYTLFVLVHDNSHVELTSVISGSLSHGEPGHGLADRVINCREVLEAFNLLVLQVTSCPYTLQTQQSRISTSNEVHWIQLDSTEDMNGEEKLYFGLNEYSKSLQWGITSPLLRCDETFEKMVNTLLERYPRLHSMVVRCYLLIQQYSEALMALTTMASLRDHSTPETLSIMDDLLSSPGKNKSGKGHMLILRVPSVQLAMLAKERLQEVRDKLGLQYRFEIILGNPASELSVATHFVTRLKTWRGNEAEEWIPRTYQDLEGLPCIVILTGKDPLGETFPRSLKYCDLRLIDSSYLTRTALEQEVGLACCYVSKEVVRGPTAALDLSSKEQERATASENDAEELLIDLERPQSNSSAVTGTSGSIMENGVSSSSTADKSQKQPPTPSFQSPGNSAGLDEGVSAGIAEPLKQECDSLGPPMASSTTSKPSSSSSGPRTLRWPGPPAALPPIVILSKAAYSLLGSPRAGRLPASAALLPHADVAWVSSLRPLPPRQAGGEEQSRYYRQWTSARPHADYSNQPDPGSGTRACHPRRLLLSGPPQVGKTGSYLQFLRILFRMLIRLLEVDVYDEGEINADHSESSEVSQSEGEPWPDIESFSKIPFDVSVHDPKYRLMSLVYTEKLAGVKREAIKESKVEEPRKRETVSMMLTKYAAYNTFHHCEQCHQYMDFTSASQMSDSTLHAFTFSSSMLGEEVQLYFIIPKSKESHFVFSKQGKHLESMRLPLVSDKNLNAVKSPIFTPSSGRHEHGLLNLFHAMEGISHLHLLVVKEYEMPLYRKYWPNHIMLVLPGMFNNAGVGAARFLIKELSYHNLELERNRLEELGIKRQCVWPFIVVMDDSCVLWNIHSVEEQSGQPVETGVSSKNVSLKSVLQHIEATPKIIHYAILGIQKWSSKLTSQSLKSPFSRCHVHDFILLNIDLTQNVQYDFKYFCEDVDFNLRTNSSGLLICRFNNFSLMKKQVQVGGQRDFIIKPKIMVSESLAPILPLQYVCAPDSEHTLLAAPAQFLLEKFLQHASYKLFPKAIQNFRSPVLAIDCYLNIGPEVAICYVSSRPHSSNVNCEGVCFSGLLLYLCDSFVGADLLKKFKFLKGATLCVICQDRSSLRQTIVRLELEDEWQFRLRDEFQTANSNDDKPLYFLTGRHV", "length": 1909, "header": "tr|F1SBC3-1|F1SBC3_PIG Isoform 1 of GREB1 like retinoic acid receptor coactivator OS=Sus scrofa OX=9823 GN=GREB1L PE=3 SV=4 CANONICAL=F1SBC3-1" }, "locus": { "chromosome": "6", "start_pos": 106691124, "end_pos": 106566595, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004098.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004098.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004006.4", "url": "https://www.ensembl.org/id/ENSSSCP00000004006.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1089, "start_aa": "Thr", "end_pos": 1089, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1089", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1153, "start_aa": "Thr", "end_pos": 1153, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1153", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 296, "start_aa": "Thr", "end_pos": 296, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr296", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXD0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXD0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SBC3", "url": "https://www.uniprot.org/uniprotkb/F1SBC3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "kidney development", "id": "GO:0001822", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001822", "evidence": [ { "database": "UniProtKB", "id": "F1SBC3", "url": "https://www.uniprot.org/uniprotkb/F1SBC3" } ], "pmid": "" }, { "name": "morphogenesis of an epithelium", "id": "GO:0002009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002009", "evidence": [ { "database": "UniProtKB", "id": "F1SBC3", "url": "https://www.uniprot.org/uniprotkb/F1SBC3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1122, "end_pos": 1124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1631, "end_pos": 1633, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1708, "end_pos": 1710, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1719, "end_pos": 1721, "annotation": "n_glycosylation_sequon" }, { "start_pos": 253, "end_pos": 255, "annotation": "n_glycosylation_sequon" }, { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 665, "end_pos": 667, "annotation": "n_glycosylation_sequon" }, { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" }, { "start_pos": 738, "end_pos": 740, "annotation": "n_glycosylation_sequon" }, { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" }, { "start_pos": 950, 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"https://www.genome.jp/dbget-bin/www_bget?ssc:100513605", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HPPRWAQ", "url": "https://omabrowser.org/oma/group/HPPRWAQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S9F2", "url": "https://www.orthodb.org/?gene=F1S9F2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17408", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17408", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17408:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17408:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15247", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15247", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-159230", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159230", "database": 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"categories": [ "Protein" ] } ], "sequence": { "sequence": "MACRPRSPSGCGSRRDGDASPPPPARWSLGRKRTADGRRRKPEDAEGPARPAGGRRPDSFTTPEGPQPRSRCSDWASAVEEDEMRTRVSQEIARYKRKLLVNDFGRERKSSSGSSDSKESLSALPADLETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGVHPRTPNKFKKYSRRSWDQQIKLWKVALHFWDPPAAEGCDLEEIHPVDLGEMETDSAGSSSESQASSQDNLDVYCGTPTKVRHVDCPLEDEFDLEACLTEPLKDFSAMS", "length": 275, "header": "tr|F1S9F2-1|F1S9F2_PIG Isoform 1 of Histone RNA hairpin-binding protein OS=Sus scrofa OX=9823 GN=TMEM129 PE=3 SV=2 CANONICAL=F1S9F2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXI8-1", "url": "https://www.uniprot.org/uniprotkb/F1S9F2/entry#A0A5G2QXI8-1", "sequence": { "sequence": "MACRPRSPSGCGSRRDGDASFTTPEGPQPRSRCSDWASAVEEDEMRTRVSQEIARYKRKLLVNDFGRERKSSSGSSDSKESLSALPADLETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGVHPRTPNKFKKYSRRSWDQQIKLWKVALHFWDPPAAEGCDLEEIHPVDLGEMETDSAGSSSESQASSQDNLDVYCGTPTKVRHVDCPLEDEFDLEACLTEPLKDFSAMS", "length": 236, "header": "tr|A0A5G2QXI8-1|F1S9F2_PIG Computationally mapped isoform of Histone RNA hairpin-binding protein OS=Sus scrofa OX=9823 GN=TMEM129 PE=3 SV=1 CANONICAL=F1S9F2-1" }, "locus": { "chromosome": "8", "start_pos": 818065, "end_pos": 803740, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082992.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082992.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068860.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068860.1" } ] } }, { "isoform_ac": "F1S9F2-1", "url": "https://www.uniprot.org/uniprotkb/F1S9F2/entry#F1S9F2-1", "sequence": { "sequence": "MACRPRSPSGCGSRRDGDASPPPPARWSLGRKRTADGRRRKPEDAEGPARPAGGRRPDSFTTPEGPQPRSRCSDWASAVEEDEMRTRVSQEIARYKRKLLVNDFGRERKSSSGSSDSKESLSALPADLETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGVHPRTPNKFKKYSRRSWDQQIKLWKVALHFWDPPAAEGCDLEEIHPVDLGEMETDSAGSSSESQASSQDNLDVYCGTPTKVRHVDCPLEDEFDLEACLTEPLKDFSAMS", "length": 275, "header": "tr|F1S9F2-1|F1S9F2_PIG Isoform 1 of Histone RNA hairpin-binding protein OS=Sus scrofa OX=9823 GN=TMEM129 PE=3 SV=2 CANONICAL=F1S9F2-1" }, "locus": { "chromosome": "8", "start_pos": 818065, "end_pos": 803740, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009493.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009493.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009249.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009249.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXI8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXI8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513605", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513605", "resource": "KEGG Pathway" }, { "id": "R-SSC-159230", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159230", "resource": "Reactome", "description": "Transport of the SLBP Dependant Mature mRNA" }, { "id": "R-SSC-73856", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73856", "resource": "Reactome", "description": "RNA Polymerase II Transcription Termination" }, { "id": "R-SSC-77588", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77588", "resource": "Reactome", "description": "SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LRZ2-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbp", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MACRPRSPPRYGSRHDAGENPRSPARWSLGRKRRADGRDRKPEDSEESERQIADRRPESFTTPEGPKPRSRCSDWASAVEEDEMRTRVNKEIARYKRKLLINDFGRERKSSSGSSDSKESMSSVPADVETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPRTPNKFKKYSRRSWDQQIKLWKVALHFWDPPAEEGCDLQEIQPVDLGEMETEFTESSSESQTSSQDNFDMYAGTPTKVRHVDCQVEDEFDLDACLTEPLKDFSAMS", "length": 275 }, "evidence": [ { "id": "F1S9F2", "url": "https://omabrowser.org/oma/group/F1S9F2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "B3DM97-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACRPRSPPRYGSRRDGGASPRSPARWSLGRKRRADGRDRKPEDSEEGELQTADHRPESFTTPEGHKPRSRCSDWASAVEEDEMRTRVNKEIARYKRKLLINDFGRERKSSSGSSDSKESVSSVPADVETDESVLMRRQKQINYGKNTMAYDRYIKEVPRHLRQPGIHPRTPNKFKKYSRRSWDQQIKLWKVALHFWDPPAEEGCDLQEIQPVDLGEMETEFTESSSESQTSSQDNFDVYAGTPTKVRHVDCQVEDEFDLEACLTEPLKDFSAMS", "length": 275 }, "evidence": [ { "id": "F1S9F2", "url": "https://omabrowser.org/oma/group/F1S9F2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P97440-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MACRPRSPPGYGSRRDGGASPRSPARWSLGRKRRADGRDRKPEDSEEGELQTADHRPESFTTPEGHKPRSRCSDWASAVEEDEMRTRVNKEIARYKRKLLINDFGRERKSSSGSSDSKESMSSVPADVETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPRTPNKFKKYSRRSWDQQIKLWKVALHFWDPPAEEGCDLQEIQPVDLGEMETEFTESSSESQTSSQDNFDVYAGTPTKVRHVDCQVEDEFDLEACLTEPLKDFSAMS", "length": 275 }, "evidence": [ { "id": "F1S9F2", "url": "https://omabrowser.org/oma/group/F1S9F2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q14493-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "SLBP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKESMSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPTKVRHMDSQVEDEFDLEACLTEPLRDFSAMS", "length": 270 }, "evidence": [ { "id": "F1S9F2", "url": "https://omabrowser.org/oma/group/F1S9F2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F1S9F2", "url": "https://www.uniprot.org/uniprotkb/F1S9F2" } ], "pmid": "" }, { "name": "histone pre-mRNA stem-loop binding", "id": "GO:0071207", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071207", "evidence": [ { "database": "UniProtKB", "id": "F1S9F2", "url": "https://www.uniprot.org/uniprotkb/F1S9F2" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1S9F2", "url": "https://www.uniprot.org/uniprotkb/F1S9F2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S9F2", "url": "https://www.uniprot.org/uniprotkb/F1S9F2" } ], "pmid": "" }, { "name": "histone pre-mRNA 3'end processing complex", "id": "GO:0071204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071204", "evidence": [ { "database": "UniProtKB", "id": "F1S9F2", "url": "https://www.uniprot.org/uniprotkb/F1S9F2" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S9F2", "url": "https://www.uniprot.org/uniprotkb/F1S9F2" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1S9F2", "url": "https://www.uniprot.org/uniprotkb/F1S9F2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S9F2", "url": "https://www.uniprot.org/uniprotkb/F1S9F2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S9F2", "url": "https://www.uniprot.org/uniprotkb/F1S9F2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "mRNA 3'-end processing by stem-loop binding and cleavage", "id": "GO:0006398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006398", "evidence": [ { "database": "UniProtKB", "id": "F1S9F2", "url": "https://www.uniprot.org/uniprotkb/F1S9F2" } ], "pmid": "" }, { "name": "mRNA transport", "id": "GO:0051028", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051028", "evidence": [ { "database": "UniProtKB", "id": "F1S9F2", "url": "https://www.uniprot.org/uniprotkb/F1S9F2" } ], "pmid": "" }, { "name": "cap-dependent translational initiation", "id": "GO:0002191", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002191", "evidence": [ { "database": "UniProtKB", "id": "F1S9F2", "url": "https://www.uniprot.org/uniprotkb/F1S9F2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S9F2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 275, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S9F2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S9F2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9F2" }, { "id": "PF15247", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15247" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Histone RNA hairpin-binding protein RNA-binding", "eco_id": "ECO_0000259", "start_pos": 130, "end_pos": 199, "start_aa": "Thr", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SDC2-1", "uniprot_ac": "F1SDC2", "uniprot_id": "F1SDC2_PIG", "mass": { "chemical_mass": 48486.0, "monoisotopic_mass": 48486.0 }, "refseq": { "ac": "XP_001928381", "name": "lysophosphatidic acid phosphatase type 6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928381" }, "gene_names": [ { "name": "ACP6", "type": "recommended", "evidence": [ { "id": "F1SDC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDC2" } ] }, { "name": "ACP6", "type": "synonym", "evidence": [ { "id": "XP_001928381", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928381" } ] } ], "protein_names": [ { "name": "Lysophosphatidic acid phosphatase type 6", "type": "recommended", "evidence": [ { "id": "F1SDC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDC2/entry#names_and_taxonomy" } ] }, { "name": "3.1.3.2", "type": "synonym", "evidence": [ { "id": "F1SDC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDC2/entry#names_and_taxonomy" } ] }, { "name": "lysophosphatidic acid phosphatase type 6", "type": "synonym", "evidence": [ { "id": "XP_001928381", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928381" } ] } ], "function": [ { "annotation": "Hydrolyzes lysophosphatidic acid (LPA) containing a medium length fatty acid chain to the corresponding monoacylglycerol. Has highest activity with lysophosphatidic acid containing myristate (C14:0), monounsaturated oleate (C18:1) or palmitate (C16:0), and lower activity with C18:0 and C6:0 lysophosphatidic acid.", "evidence": [ { "database": "UniProtKB", "id": "F1SDC2", "url": "https://www.uniprot.org/uniprotkb/F1SDC2#function" }, { "database": "UniProtKB", "id": "ARBA00053526", "url": "https://www.uniprot.org/uniprotkb/ARBA00053526#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDC2", "url": "https://www.uniprot.org/uniprotkb/F1SDC2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ACP6", "url": "https://www.uniprot.org/uniprotkb/F1SDC2", "locus": { "chromosome": "4", "start_pos": 99968412, "end_pos": 99930345, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006697", "url": "https://www.ensembl.org/id/ENSSSCG00000006697" } ] } } ], "crossref": [ { "id": "F1SDC2", "url": "https://alphafold.ebi.ac.uk/entry/F1SDC2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006697", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006697", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07061", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07061", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156584", "url": "https://www.ncbi.nlm.nih.gov/gene/100156584", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000560", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000560", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029033", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029033", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033379", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033379", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050645", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050645", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156584", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156584", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SWPPFTS", "url": "https://omabrowser.org/oma/group/SWPPFTS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SDC2", "url": "https://www.orthodb.org/?gene=F1SDC2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11567", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11567", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11567:SF202", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11567:SF202", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00328", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00328", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1483166", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483166", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001928381", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928381", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "15017", "url": "https://www.rhea-db.org/rhea/15017", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "39835", "url": "https://www.rhea-db.org/rhea/39835", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QXR0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5W1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5W1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5W1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5W1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHT5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHT5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDC2", "url": "https://www.uniprot.org/uniprotkb/F1SDC2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDC2-1", "url": "https://www.uniprot.org/uniprotkb/F1SDC2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISGLFRVRLWAPVGVFTSLVHCLHQRRVALAELRGADDQKAVDQSLLELKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLVGGPKPHSPFDSQYQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRNLESTRCLLAGLFQRQKEGPIVIHTDEASSEVLYPNYQNCWSLQERTRGRKQAAALQPGISEDLETVKEGMGIASGDRVDFLILFDNVAAEQVHSLPSCPTLRRFARMIERRAVDTALYILQREDREGLQMAVGPFLHILESNLLKAADPATPSGKTRKLYLYAAHDVTLMPLLMVLGIFDHKWPPFAVDLTMELYQHRKSKEWFVQLYYHGEEQVPKGCPDRLCPLDKFLNAMSVYSLSPEKYHTLCSEAQVTGLGSGE", "length": 428, "header": "tr|F1SDC2-1|F1SDC2_PIG Isoform 1 of Lysophosphatidic acid phosphatase type 6 OS=Sus scrofa OX=9823 GN=ACP6 PE=1 SV=1 CANONICAL=F1SDC2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXR0-1", "url": "https://www.uniprot.org/uniprotkb/F1SDC2/entry#A0A5G2QXR0-1", "sequence": { "sequence": "MISGLFRVRLWAPVGVFTSLVHCLHQRRVALAELRGADDQKAVDQSLLELKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLVGGPKPHSPFDSQYQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRNLESTRCLLAGLFQRQKEGPIVIHTDEASSEVLYPNYQNCWSLQERTRGRKQAAALQPGISEDLETVKEGMGIASGDRVDFLILFDNVAAEQVGWPLHPLHAEEGLQMAVGPFLHILESNLLKAADPATPSGKTRKLYLYAAHDVTLMPLLMVLGIFDHKWPPFAVDLTMELYQHRKSKEWFVQLYYHGEEQVPKGCPDRLCPLDKFLNAMSVYSLSPEKYHTLCSEAQVTGLGSGE", "length": 405, "header": "tr|A0A5G2QXR0-1|F1SDC2_PIG Computationally mapped isoform of Lysophosphatidic acid phosphatase type 6 OS=Sus scrofa OX=9823 GN=ACP6 PE=1 SV=1 CANONICAL=F1SDC2-1" }, "locus": { "chromosome": "4", "start_pos": 99948001, "end_pos": 99930821, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076074.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076074.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069710.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069710.1" } ] } }, { "isoform_ac": "A0A5G2R5W1-1", "url": "https://www.uniprot.org/uniprotkb/F1SDC2/entry#A0A5G2R5W1-1", "sequence": { "sequence": "MISGLFRVRLWAPVGVFTSLVHCLHQRRVALAELRGADDQKAVDQSLLELKMVQVVFRHGARSPLKPLPQEEQGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRNLESTRCLLAGLFQRQKEGPIVIHTDEASSEVLYPNYQNCWSLQERTRGRKQAAALQPGISEDLETVKEGMGIASGDRVDFLILFDNVAAEQVGWPLRPRGS", "length": 227, "header": "tr|A0A5G2R5W1-1|F1SDC2_PIG Computationally mapped isoform of Lysophosphatidic acid phosphatase type 6 OS=Sus scrofa OX=9823 GN=ACP6 PE=1 SV=2 CANONICAL=F1SDC2-1" }, "locus": { "chromosome": "4", "start_pos": 99942677, "end_pos": 99930821, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084691.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084691.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069530.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069530.2" } ] } }, { "isoform_ac": "A0A8W4FHT5-1", "url": "https://www.uniprot.org/uniprotkb/F1SDC2/entry#A0A8W4FHT5-1", "sequence": { "sequence": "MISGLFRVRLWAPVGVFTSLVHCLHQRRVALAELRGADDQKAVDQSLLELKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLVGGPKPHSPFDSQYQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRNLESTRCLLAGLFQRQKEGPIVIHTDEASSEVLYPNYQNCWSLQERTRGRKQAAALQPGISEDLETVKEGMGIASGDRVDFLILFDNVAAEQEQPRPRGS", "length": 268, "header": "tr|A0A8W4FHT5-1|F1SDC2_PIG Computationally mapped isoform of Lysophosphatidic acid phosphatase type 6 OS=Sus scrofa OX=9823 GN=ACP6 PE=1 SV=1 CANONICAL=F1SDC2-1" }, "locus": { "chromosome": "4", "start_pos": 99942677, "end_pos": 99930821, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099731.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099731.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079008.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079008.1" } ] } }, { "isoform_ac": "F1SDC2-1", "url": "https://www.uniprot.org/uniprotkb/F1SDC2/entry#F1SDC2-1", "sequence": { "sequence": "MISGLFRVRLWAPVGVFTSLVHCLHQRRVALAELRGADDQKAVDQSLLELKMVQVVFRHGARSPLKPLPQEEQVEWKPQLLEVPPQTQFDYTVTNLVGGPKPHSPFDSQYQKTTLKGGVFAGQLTKVGMQQMFALGERLRKKYVEDTPFLSPTFNPVEVFIRSTNIYRNLESTRCLLAGLFQRQKEGPIVIHTDEASSEVLYPNYQNCWSLQERTRGRKQAAALQPGISEDLETVKEGMGIASGDRVDFLILFDNVAAEQVHSLPSCPTLRRFARMIERRAVDTALYILQREDREGLQMAVGPFLHILESNLLKAADPATPSGKTRKLYLYAAHDVTLMPLLMVLGIFDHKWPPFAVDLTMELYQHRKSKEWFVQLYYHGEEQVPKGCPDRLCPLDKFLNAMSVYSLSPEKYHTLCSEAQVTGLGSGE", "length": 428, "header": "tr|F1SDC2-1|F1SDC2_PIG Isoform 1 of Lysophosphatidic acid phosphatase type 6 OS=Sus scrofa OX=9823 GN=ACP6 PE=1 SV=1 CANONICAL=F1SDC2-1" }, "locus": { "chromosome": "4", "start_pos": 99948001, "end_pos": 99930821, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007336.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007336.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007141.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007141.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 320, "start_aa": "Thr", "end_pos": 320, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr320", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXR0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXR0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156584", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156584", "resource": "KEGG Pathway" }, { "id": "R-SSC-1483166", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483166", "resource": "Reactome", "description": "Synthesis of PA" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LNW8-1", "protein_name": "Lysophosphatidic acid phosphatase type 6", "gene_name": "Acp6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRVWAPVGVLASLAYCFHQRRVALAEQRAPVDRNLLELKMVQVVFRHGARSPLKPLPLEDQVEWNPKLLEIPPQTRFEYTVANLAGGPKPHSHYDTEYHRTVLRGGMFAGQLTKVGMQQMFALGERLRKNYVEDIPFLSPIYNPQEVFVRSTNMFRNLESTRCLLAGLFQRQKESVIIHTDEAISEVLYPNYQSCWSLREKTRGRKKAAISQPGILEDLEKVKAGVGIADSDNVDFFILLDNMVAEEAHSLLSSPALKRFAQLIEQRAVDMALYMLQQEDRESIQMAVGPFLYILEGNLLKAVDPSTPPSKTRKMYLYATHDVTLLPMLLALGIFDNKWPPFAVDLTVELYQHQESKEWFVRLSYNGSKYQEAAPTSSVHWTSS", "length": 384 }, "evidence": [ { "id": "F1SDC2", "url": "https://omabrowser.org/oma/group/F1SDC2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6H757-1", "protein_name": "Lysophosphatidic acid phosphatase type 6", "gene_name": "ACP6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MISRVFKLRMWAPVGVLTSLTYCLHQRRVALAEPGGADQQNPVDRNLLELKMVQVVFRHGARSPLKPLPQEDQQVEWKSQLLEVPPQTQLEYTVTNLAGGPKPHSPFDSQYHETTLKGGMFAGQLTKVGMEQMFALGERLRKNYVEDIPFLSPTFNPLEVFIRSTNIYRNLESTRCLLAGLFQRQKEGPIVIHTDEASSEVLYPNYQYCWNLQKRTRGRRQAASLQPGISEDLKKVKEGMGIASSDEVDFLVLLDNMAAEQVHSLPSCPTLKRFAWMIEQRAVDTALYILQWEDREGLQMAVGPFLHILESNLLKVVDPATPPSKTRKLYLYAAHDVTLMPLLMTLGIFDHKWPPFAVDLTMELYQHRESKEWFVQLYYRGKEQVPKGCPDGLCPLDKFLNTISVYTLSPEKYHMLCSEAQMMGLGNGE", "length": 429 }, "evidence": [ { "id": "F1SDC2", "url": "https://omabrowser.org/oma/group/F1SDC2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54P71-1", "protein_name": "Probable acid phosphatase DDB_G0284755", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIINFLLNSIVGTVKLDENPNINLKNNINNNDNNKENSIEINDYLQTLVKEEDFKNQHTDPNFKFLALRSTKVPIDEYNPENYQLKFVQIITRHGRRTPESKRYPLTMWTCNSLDQLITNKDTSRPDCNMGQLTVLGIVDQINVGKAYRNLFINNLHFLDNKYNKDQIFIRSSNRERTISSARSFMHGLYGGSFADDQEKSPNHSSFLILDEKDENMYPRSSPKYNFLKGLLKKHKAVIEENEKSNLKEFTEKIKNIFEDSKFDTAFYVPSWRSYAGLVNSFDCFRNNGLPLPKGFTNDVIQRMYEESAKEFKSARLFPEMSILGIGRFVNDLTKQMYLKSVNDPSVKDLKLSLYSGHDTTLAALLVAYDMYEDNVHPVTSSALEYLLFQDKNYKEPEVVTKSNEKELINHQYVKVIFNHKPIHIGPCKDKEVDGMCPLSEFLKISQSIIPTNYDEQSKITDEEKNKYIQEST", "length": 473 }, "evidence": [ { "id": "F1SDC2", "url": "https://omabrowser.org/oma/group/F1SDC2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BP40-1", "protein_name": "Lysophosphatidic acid phosphatase type 6", "gene_name": "Acp6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRVWVPVGVLTSLAYCFHQRRVALAEQRAPNGQRPVDRNLLELKMVQVVFRHGARSPLKPLPLEEQVEWNPKLLEIPPQTRFDYTVTNLAGGPKPHSHYDTEYRKTTLRGGVLAGQLTKVGMQQMFALGEKLRKNYVEDIPFLSPVYNPQEVFIRSTNMFRNLESTRCLLAGLFQHQKGSAVIHTDEASSEVLYPNYQSCWVLKEKTRGRKKAAISQPGISEDLEKVKTGVGINNGDDVDFFVLLDNVAAEQVHSLLNCPALERFAQLIEQRAVDMALYVVEQEDRESIQMAVGPFLHILEGNLLKTVDPTTAPSKTRKMYLYATHDVTLLPMLLALGIFDQKWPPFAVDLTMELYQHQESKEWFVQLFYNGKEQVPRGCPDKLCPLDKFLNTMSVYSVSPEKYRTLCSKTRIVELGE", "length": 418 }, "evidence": [ { "id": "F1SDC2", "url": "https://omabrowser.org/oma/group/F1SDC2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NPH0-1", "protein_name": "Lysophosphatidic acid phosphatase type 6", "gene_name": "ACP6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MITGVFSMRLWTPVGVLTSLAYCLHQRRVALAELQEADGQCPVDRSLLKLKMVQVVFRHGARSPLKPLPLEEQVEWNPQLLEVPPQTQFDYTVTNLAGGPKPYSPYDSQYHETTLKGGMFAGQLTKVGMQQMFALGERLRKNYVEDIPFLSPTFNPQEVFIRSTNIFRNLESTRCLLAGLFQCQKEGPIIIHTDEADSEVLYPNYQSCWSLRQRTRGRRQTASLQPGISEDLKKVKDRMGIDSSDKVDFFILLDNVAAEQAHNLPSCPMLKRFARMIEQRAVDTSLYILPKEDRESLQMAVGPFLHILESNLLKAMDSATAPDKIRKLYLYAAHDVTFIPLLMTLGIFDHKWPPFAVDLTMELYQHLESKEWFVQLYYHGKEQVPRGCPDGLCPLDMFLNAMSVYTLSPEKYHALCSQTQVMEVGNEE", "length": 428 }, "evidence": [ { "id": "F1SDC2", "url": "https://omabrowser.org/oma/group/F1SDC2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "acid phosphatase activity", "id": "GO:0003993", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003993", "evidence": [ { "database": "UniProtKB", "id": "F1SDC2", "url": "https://www.uniprot.org/uniprotkb/F1SDC2" } ], "pmid": "" }, { "name": "lysophosphatidic acid phosphatase activity", "id": "GO:0052642", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052642", "evidence": [ { "database": "UniProtKB", "id": "F1SDC2", "url": "https://www.uniprot.org/uniprotkb/F1SDC2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lysobisphosphatidic acid metabolic process", "id": "GO:2001311", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001311", "evidence": [ { "database": "UniProtKB", "id": "F1SDC2", "url": "https://www.uniprot.org/uniprotkb/F1SDC2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SDC2", "url": "https://www.uniprot.org/uniprotkb/F1SDC2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "15017", "name": "", "equation": "a phosphate monoester + H2O = an alcohol + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "15017", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/15017" } ] }, { "id": "39835", "name": "", "equation": "1-(9Z-octadecenoyl)-sn-glycero-3-phosphate + H2O = 1-(9Z-octadecenoyl)-sn-glycerol + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "39835", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/39835" } ] }, { "id": "R-SSC-8878654", "name": "ACP6 hydrolyses MYS-LPA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [ "R-ALL-8878649" ], "output_participant_list": [ "R-ALL-8934414" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8878654", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8878654" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-8878649", "participant_name": "MYS-LPA [mitochondrial matrix]", "crossref": [ { "id": "62833", "database": "ChEBI", "url": "" }, { "id": "ZINC000062624861", "database": "ZINC", "url": "" }, { "id": "HMDB0062321", "database": "HMDB Metabolite", "url": "" } ] }, { "participant_id": "R-ALL-8934414", "participant_name": "1-MMG [mitochondrial matrix]", "crossref": [ { "id": "ZINC000032840884", "database": "ZINC", "url": "" }, { "id": "ZINC000032840883", "database": "ZINC", "url": "" }, { "id": "75562", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDC2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 428, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDC2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDC2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 320 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": 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"length": 1018, "header": "tr|A0A5G2QYR1-1|F1SEM9_PIG Computationally mapped isoform of Microtubule crosslinking factor 2 OS=Sus scrofa OX=9823 GN=MTCL2 PE=4 SV=1 CANONICAL=F1SEM9-1" }, "locus": { "chromosome": "17", "start_pos": 40079516, "end_pos": 40020443, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087589.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087589.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070013.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070013.1" } ] } }, { "isoform_ac": "F1SEM9-1", "url": "https://www.uniprot.org/uniprotkb/F1SEM9/entry#F1SEM9-1", "sequence": { "sequence": "MEVPAGEPPARGCGPPPAPAPERKKSHRAPSPARPKDVAGWSLAKGRRGPGPGAAAACSSASSARPDKKGRAVAPGARGAGTRVAGVRTGVRAKGRPRPGTGPRPPPPPPSLTDSSSEVSDCASEEARLLGLELALSSDAESAAGGPAGARTGQPPQPAPPAQQPPRPPASPEEPSVAASSVGSSRLPLSASLAFSDLTEEMLDCGPGGFMRELEELRSENDYLKDEIEELRAEMLEMRDVYMEEDVYQLQELRQQLDQASKTCRILQYRLRKAERRSLRAAQTGQVDGELIRGLEQDVKVSKDISVRLHKELEAVEKKRARLEEENEELRQRLIETELAKQVLQTELERPREHSLKKRGTRSLGKTDKKPSVQEDSADLKCQLHFAKEESALMCKKLTKLAKENDGMKEELLKYRSLYGDLDGALSAEELADAPHSRETELKVHLKLVEEEANLLSRRIVELEVENRGLRAEMDDMKDHGGGGCGGPEARLAFSALGGSECGESTAELRRHLQFVEEEAELLRRSSAELEDQNKLLLTELAKYRSEHELDVTLSEDSCSVLSEPSQEELAAAKLQIGELSGKVKKLQYENRVLLSNLQRCDLASCQSTRPMLETDAEAGDSAQCVPAALGEVQGPHAARLCRAREAEVLSGLREQAVLVSKAIDVLVADANGFSAGFRLCLDNECADFRLHEAPDNNSEGPRDTKLIHALLVRLSLLQQELNAFTRKADSVLGGPTKEQPEPFSALPSLGSQGPSKEILLAKDLGSDFQPPDFRDLPEWEPRIRETFRTGDLDSKPDPSRSFRPYRAEDNDSYASEIKELQLVLAEAHDSLRGLQEQLSQERQLRKEEADNFNQKMVQLKEDQQRALLRREFELQSLSLQRRLEQKFWSQEKNMLVQESQQFKHNFLLLFMKLRWFLKRWRQGKVLPNEGDDFLEVNSMKELYLLMEEEEINAQHSDNKTCAGDSWTQNTPNEYIKTLADMKVTLKELCWLLRDERRGLTELQQQFAKAKATWETERAELKSHITPMELKTGKGAGDRVGPDWKAALQREREEQQHLLAESYSAVMELTRQLQISEHNWGQEKLQLVERLQGEKQQVEQQVKELQNRLSQLQKAADPWVLKHSDLEKQDNSWKETRSEKIHDKEGVSEVELGGNGLKRTKSVSSMSEFESLLDCSPYLASEAARGKKLPSSPAFAFVGPQPVEPEKAAPEQPGLSPGDCNRLGALGCPEPAGRQMQRSYTAPDKTGIRVYYSPPVARRLGVPVVHDREGKIIIEPGFLFTTAKPKESAEADRLAESSYSRWLCNFSRQRLDGGSGSGPSAPGPTFPAALHDFEMSGNMSDDMKEITNCVRQAMRSGSLERKVKSTSSQTVGLASVGTQTIRTVSVGLQTDPPRSSLHGKSWSPRSSSLVSVRSKQIASSLDKVHSRIERPCCSPKYGSPKLQRRSVSKLDGAKDRSLWNLHQGKQNGSAWARSTTTRDSPVLRNINDGLSSLFSVVEHSGSTESVWKLGMSEARAKPEPPKYGIVQEFFRNVCGRAPSPTATPGEEGPKKPEPLSPASYHQPEGVARIVNKKAAKPGSSEEARLSVLPQVGKDGVPRDGDGTTVLLSEDAVCDCSTQSLTSCFARPSRSAIRHSPSKCRLHPSESGWGGEERAVPPSE", "length": 1659, "header": "tr|F1SEM9-1|F1SEM9_PIG Isoform 1 of Microtubule crosslinking factor 2 OS=Sus scrofa OX=9823 GN=MTCL2 PE=4 SV=4 CANONICAL=F1SEM9-1" }, "locus": { "chromosome": "17", "start_pos": 40098802, "end_pos": 40027978, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008014.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008014.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007800.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007800.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1541, "start_aa": "Thr", "end_pos": 1541, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1541", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1543, "start_aa": "Thr", "end_pos": 1543, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1543", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYR1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYR1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SEM9", "url": "https://www.uniprot.org/uniprotkb/F1SEM9" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SEM9", "url": "https://www.uniprot.org/uniprotkb/F1SEM9" } ], "pmid": "" }, { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "F1SEM9", "url": "https://www.uniprot.org/uniprotkb/F1SEM9" } ], "pmid": "" }, { "name": "midbody", "id": "GO:0030496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030496", "evidence": [ { "database": "UniProtKB", "id": "F1SEM9", "url": "https://www.uniprot.org/uniprotkb/F1SEM9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "regulation of autophagy", "id": "GO:0010506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010506", "evidence": [ { "database": "UniProtKB", "id": "F1SEM9", "url": "https://www.uniprot.org/uniprotkb/F1SEM9" } ], "pmid": "" }, { "name": "chromosome segregation", "id": "GO:0007059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007059", "evidence": [ { "database": "UniProtKB", "id": "F1SEM9", "url": "https://www.uniprot.org/uniprotkb/F1SEM9" } ], "pmid": "" }, { "name": "insulin receptor signaling pathway", "id": "GO:0008286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008286", "evidence": [ { "database": "UniProtKB", "id": "F1SEM9", "url": "https://www.uniprot.org/uniprotkb/F1SEM9" } ], "pmid": "" }, { "name": "negative regulation of gluconeogenesis", "id": "GO:0045721", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045721", "evidence": [ { "database": "UniProtKB", "id": "F1SEM9", "url": "https://www.uniprot.org/uniprotkb/F1SEM9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1305, "end_pos": 1307, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1338, "end_pos": 1340, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1467, "end_pos": 1469, "annotation": "n_glycosylation_sequon" }, { "start_pos": 697, "end_pos": 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"id": "ENSSSCG00000010575", "url": "https://www.ensembl.org/id/ENSSSCG00000010575" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010575", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010575", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12624", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12624", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034605", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034605", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034834", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034834", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15528", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15528", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15528:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15528:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QZG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8T2", "url": "https://www.uniprot.org/uniprotkb/F1S8T2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8T2-1", "url": "https://www.uniprot.org/uniprotkb/F1S8T2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAARRARRDGVAPPPSGGPGPDPGGGVRSSGWGSRSQAPYGTVGAVSSGEQVLLHEEGDDSGFVSLSRLGPCVRDKDLEMEELILQDGTLLGTMHSYMDASLISLIEDFGSLGESRLSLEDQNEVSLLTALTEILDNADSENLSPFDSIPDSELLVSPREGSSLHRLLSLSRTPPERDLITPTDPLGPSTGSSRVSGVEMSLADAPWDFSPPSFLETSSPKLPSWRPPRSRPRWGQSPPPQQRSDGEEEEEVAGFSSEMLAGELDNSVSSIPDFPMHLACPEEEDRAAAVEMAVQAAGDESISSLSELVRAMHPYCLPSLTHLTALEDELQEQPDDLTLPEDCVVLEIVGQAATAGNDLEIPVVVRQIPTGPQSVILDDTLDASPALQLLMPTLEAEAEAAVPKEALCPEKEGLSLDSKEKLESACLLEPREITEPVAPKGPQNPPVNAMLSSQRARKGRRKKSKEQPAACAEGYTRRLRSASRGQSTAVTEVASQGGSLPQEDLQREIGPPHGRGKPRAWARAWAATLEKPSSGNGNLQGSTGQASPAKESPLDLYPSLVDPIQANPVSSHLSVVDSAQADPMPLDSVEADSTVVDSVVADPVPVDLASANSELVDALSADSVLNDPALTDPVAIDPVVVVPISDDLPPVDPVLANPVQVDSVSSDLAPVDPVLVKSRPTDPRRGAVSSAQGSSPPQLLESESSDLPKAVNPEVKEVAGTLKGESGTSATTQEARPRPLSLSEYRRRRQQRQAEAEERNPQPPAGKWPSLPETPTGLADIPCLVIPPAPAKKTALQRSSEAPPEACFAPVGPSPASPSPEPPTSKPVASTPTEQVPSQEMLLPARLPPPAVQSMPPTVPTALPFPTGGLGMSPSLPPPPLQPPSLPMSMGPVPPDPYTHYAPVPPWPCYPPVSPSGYPCLPPPTVPLVSGTPGTYAVPPTCNVPWVPPPATVPPYSSSCTYGPLGWGPGLQHPPFWPTVPPPPLPLNSAGRAVPQSKVEPSGIPVGPPENVLTVPMAPPLSLGAAGQGAPQIEPTKVEVTPVPACPHSKHKVSSPVHSPRIKAPPCLSAESVAVEEPASERLKPEPLETRPKEKPPSPAAKAVPTPAPRQSTATKLPAVHPARLRKLSFLPTPRTQGPEDVVQAFISEIGIEASDLSSLLEQFEKSEAKKECPPPAPADSLAVGNSGSVDTPQEKRPLDRLQAPELANVAGLTPPATPPHQLWKPLAAVSLLAKAKSPKSTAQEGTLKPEGVTEAKHPAAARLQEGVHGPSPVHVGSGDHDYCVRSRTPPKKMPALVIPEVGSRWNVKRHQDITIKPVLSLGPATPLPPSTAASQEPLDHRTSNEQADPPASCLAPPTLLSPEASPCRNDMNTRTHPEPSAKQRSVRCYRKACRSTSPPGRGWQGRRGRSSRSVSSGSNRTSEASSSSSSSSSSSSRSRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSRSRSRSPSPRRRSDRRRRYSSYRSHDHYQRQRVLQKERAIEERRVVFIGKIPGRMTRSELKQRFSVFGEIEECTIHFRVQGDNYGFVTYRYAEEAFAAIESGHKLRQADEQPFDLCFGGRRQFCKRSYSDLDSNREDFDPAPVKSKFDSLDFDTLLKQAQKNLRR", "length": 1649, "header": "tr|F1S8T2-1|F1S8T2_PIG Isoform 1 of Peroxisome proliferator-activated receptor gamma coactivator-related protein 1 OS=Sus scrofa OX=9823 GN=PPRC1 PE=4 SV=4 CANONICAL=F1S8T2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZG4-1", "url": "https://www.uniprot.org/uniprotkb/F1S8T2/entry#A0A5G2QZG4-1", "sequence": { "sequence": "MAARRARRDGVAPPPSGGPGPDPGGGVRSSGWGSRSQAPYGTVGAVSSGEQVLLHEEGDDSGFVSLSRLGPCVRDKDLEMEELILQDGTLLGTMHSYMDASLISLIEDFGSLGESRLSLEDQNEVSLLTALTEILDNADSENLSPFDSIPDSELLVSPREGSSLHRLLSLSRTPPERDLITPTDPLGPSTGSSRVSGVEMSLADAPWDFSPPSFLETSSPKLPSWRPPRSRPRWGQSPPPQQRSDGEEEEEVAGFSSEMLAGELDNSVSSIPDFPMHLACPEEEDRAAAVEMAVQAAGDESISSLSELVRAMHPYCLPSLTHLTALEDELQEQPDDLTLPEDCVVLEIVGQAATAGNDLEIPVVVRQIPTGPQSVILDDTLDASPALQLLMPTLEAEAEAAVPKEALCPEKEGLSLDSKEKLESACLLEPREITEPVAPKGPQNPPVNAMLSSQRARKGRRKKSKEQPAACAEGYTRRLRSASRGQSTAVTEVASQGGSLPQEDLQREIGPPHGRGKPRAWARAWAATLEKPSSGNGNLQGSTGQASPAKESPLDLYPSLVDPIQANPVSSHLSVVDSAQADPMPLDSVEADSTVVDSVVADPVPVDLASANSELVDALSADSVLNDPALTDPVAIDPVVVVPISDDLPPVDPVLANPVQVDSVSSDLAPVDPVLVKSRPTDPRRGAVSSAQGSSPPQLLESESSDLPKAVNPEVKEVAGTLKGESGTSATTQEARPRPLSLSEYRRRRQQRQAEAEERNPQPPAGKWPSLPETPTGLADIPCLVIPPAPAKKTALQRSSEAPPEACFAPVGPSPASPSPEPPTSKPVASTPTEQVPSQEMLLPARLPPPAVQSMPPTVPTALPFPTGGLGMSPSLPPPPLQPPSLPMSMGPVPPDPYTHYAPVPPWPCYPPVSPSGYPCLPPPTVPLVSGTPGTYAVPPTCNVPWVPPPATVPPYSSSCTYGPLGWGPGLQHPPFWPTVPPPPLPLNSAGRAVPQSKVEPSGIPVGPPENVLTVPMAPPLSLGAAGQGAPQIEPTKVEVTPVPACPHSKHKVSSPVHSPRIKAPPCLSAESVAVEEPASERLKPEPLETRPKEKPPSPAAKAVPTPAPRQSTATKLPAVHPARLRKLSFLPTPRTQGPEDVVQAFISEIGIEASDLSSLLEQFEKSEAKKECPPPAPADSLAVGNSGSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSRSRSRSPSPRRRSDRRRRYSSYRSHDHYQRQRVLQKERAIEERRVVFIGKIPGRMTRSELKQRFSVFGEIEECTIHFRVQGDNYGFVTYRYAEEAFAAIESGHKLRQADEQPFDLCFGGRRQFCKRSYSDLDSNREDFDPAPVKSKFDSLDFDTLLKQAQKNLRR", "length": 1384, "header": "tr|A0A5G2QZG4-1|F1S8T2_PIG Computationally mapped isoform of Peroxisome proliferator-activated receptor gamma coactivator-related protein 1 OS=Sus scrofa OX=9823 GN=PPRC1 PE=4 SV=1 CANONICAL=F1S8T2-1" }, "locus": { "chromosome": "14", "start_pos": 113152528, "end_pos": 113137066, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079832.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079832.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070283.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070283.1" } ] } }, { "isoform_ac": "F1S8T2-1", "url": "https://www.uniprot.org/uniprotkb/F1S8T2/entry#F1S8T2-1", "sequence": { "sequence": "MAARRARRDGVAPPPSGGPGPDPGGGVRSSGWGSRSQAPYGTVGAVSSGEQVLLHEEGDDSGFVSLSRLGPCVRDKDLEMEELILQDGTLLGTMHSYMDASLISLIEDFGSLGESRLSLEDQNEVSLLTALTEILDNADSENLSPFDSIPDSELLVSPREGSSLHRLLSLSRTPPERDLITPTDPLGPSTGSSRVSGVEMSLADAPWDFSPPSFLETSSPKLPSWRPPRSRPRWGQSPPPQQRSDGEEEEEVAGFSSEMLAGELDNSVSSIPDFPMHLACPEEEDRAAAVEMAVQAAGDESISSLSELVRAMHPYCLPSLTHLTALEDELQEQPDDLTLPEDCVVLEIVGQAATAGNDLEIPVVVRQIPTGPQSVILDDTLDASPALQLLMPTLEAEAEAAVPKEALCPEKEGLSLDSKEKLESACLLEPREITEPVAPKGPQNPPVNAMLSSQRARKGRRKKSKEQPAACAEGYTRRLRSASRGQSTAVTEVASQGGSLPQEDLQREIGPPHGRGKPRAWARAWAATLEKPSSGNGNLQGSTGQASPAKESPLDLYPSLVDPIQANPVSSHLSVVDSAQADPMPLDSVEADSTVVDSVVADPVPVDLASANSELVDALSADSVLNDPALTDPVAIDPVVVVPISDDLPPVDPVLANPVQVDSVSSDLAPVDPVLVKSRPTDPRRGAVSSAQGSSPPQLLESESSDLPKAVNPEVKEVAGTLKGESGTSATTQEARPRPLSLSEYRRRRQQRQAEAEERNPQPPAGKWPSLPETPTGLADIPCLVIPPAPAKKTALQRSSEAPPEACFAPVGPSPASPSPEPPTSKPVASTPTEQVPSQEMLLPARLPPPAVQSMPPTVPTALPFPTGGLGMSPSLPPPPLQPPSLPMSMGPVPPDPYTHYAPVPPWPCYPPVSPSGYPCLPPPTVPLVSGTPGTYAVPPTCNVPWVPPPATVPPYSSSCTYGPLGWGPGLQHPPFWPTVPPPPLPLNSAGRAVPQSKVEPSGIPVGPPENVLTVPMAPPLSLGAAGQGAPQIEPTKVEVTPVPACPHSKHKVSSPVHSPRIKAPPCLSAESVAVEEPASERLKPEPLETRPKEKPPSPAAKAVPTPAPRQSTATKLPAVHPARLRKLSFLPTPRTQGPEDVVQAFISEIGIEASDLSSLLEQFEKSEAKKECPPPAPADSLAVGNSGSVDTPQEKRPLDRLQAPELANVAGLTPPATPPHQLWKPLAAVSLLAKAKSPKSTAQEGTLKPEGVTEAKHPAAARLQEGVHGPSPVHVGSGDHDYCVRSRTPPKKMPALVIPEVGSRWNVKRHQDITIKPVLSLGPATPLPPSTAASQEPLDHRTSNEQADPPASCLAPPTLLSPEASPCRNDMNTRTHPEPSAKQRSVRCYRKACRSTSPPGRGWQGRRGRSSRSVSSGSNRTSEASSSSSSSSSSSSRSRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSRSRSRSPSPRRRSDRRRRYSSYRSHDHYQRQRVLQKERAIEERRVVFIGKIPGRMTRSELKQRFSVFGEIEECTIHFRVQGDNYGFVTYRYAEEAFAAIESGHKLRQADEQPFDLCFGGRRQFCKRSYSDLDSNREDFDPAPVKSKFDSLDFDTLLKQAQKNLRR", "length": 1649, "header": "tr|F1S8T2-1|F1S8T2_PIG Isoform 1 of Peroxisome proliferator-activated receptor gamma coactivator-related protein 1 OS=Sus scrofa OX=9823 GN=PPRC1 PE=4 SV=4 CANONICAL=F1S8T2-1" }, "locus": { "chromosome": "14", "start_pos": 113152528, "end_pos": 113137066, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011568.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011568.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011266.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011266.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1106, "start_aa": "Thr", "end_pos": 1106, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1106", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1218, "start_aa": "Thr", "end_pos": 1218, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1218", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 925, "start_aa": "Thr", "end_pos": 925, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr925", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZG4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZG4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1S8T2", "url": "https://www.uniprot.org/uniprotkb/F1S8T2" } ], "pmid": "" }, { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "F1S8T2", "url": "https://www.uniprot.org/uniprotkb/F1S8T2" } ], "pmid": "" }, { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "F1S8T2", "url": "https://www.uniprot.org/uniprotkb/F1S8T2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S8T2", "url": "https://www.uniprot.org/uniprotkb/F1S8T2" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S8T2", "url": "https://www.uniprot.org/uniprotkb/F1S8T2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1S8T2", "url": "https://www.uniprot.org/uniprotkb/F1S8T2" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1S8T2", "url": "https://www.uniprot.org/uniprotkb/F1S8T2" } ], "pmid": "" }, { "name": "energy homeostasis", "id": "GO:0097009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097009", "evidence": [ { "database": "UniProtKB", "id": "F1S8T2", "url": "https://www.uniprot.org/uniprotkb/F1S8T2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1420, "end_pos": 1422, "annotation": "n_glycosylation_sequon" }, { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S8T2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8T2" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 1528, "end_pos": 1604, "start_aa": "Arg", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 925, 1106, 1218 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1420, "end_pos": 1422 }, { "start_pos": 142, "end_pos": 144 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SDT3-1", "uniprot_ac": "F1SDT3", "uniprot_id": "F1SDT3_PIG", "mass": { "chemical_mass": 77935.0, "monoisotopic_mass": 77935.0 }, "refseq": {}, "gene_names": [ { "name": "MYBL2", "type": "recommended", "evidence": [ { "id": "F1SDT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDT3" } ] } ], "protein_names": [ { "name": "Myb-related protein B", "type": "recommended", "evidence": [ { "id": "F1SDT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDT3/entry#names_and_taxonomy" } ] }, { "name": "Myb-like protein 2", "type": "synonym", "evidence": [ { "id": "F1SDT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDT3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Transcription factor involved in the regulation of cell survival, proliferation, and differentiation. Transactivates the expression of the CLU gene.", "evidence": [ { "database": "UniProtKB", "id": "F1SDT3", "url": "https://www.uniprot.org/uniprotkb/F1SDT3#function" }, { "database": "UniProtKB", "id": "ARBA00057435", "url": "https://www.uniprot.org/uniprotkb/ARBA00057435#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDT3", "url": "https://www.uniprot.org/uniprotkb/F1SDT3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYBL2", "url": "https://www.uniprot.org/uniprotkb/F1SDT3", "locus": { "chromosome": "17", "start_pos": 46287927, "end_pos": 46256257, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007366", "url": "https://www.ensembl.org/id/ENSSSCG00000007366" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007366", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007366", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00167", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00167", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015395", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015395", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017930", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017930", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050560", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050560", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "EFPKQED", "url": "https://omabrowser.org/oma/group/EFPKQED/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45614", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45614", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45614:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45614:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00249", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00249", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09316", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09316", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13921", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13921", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R0M8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0M8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0M8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0M8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDT3", "url": "https://www.uniprot.org/uniprotkb/F1SDT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDT3-1", "url": "https://www.uniprot.org/uniprotkb/F1SDT3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRRTRGEELDELHYQDTDSDVPEQRDSKCKVKWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESRDCKPPMYLLLELEDKDRQSAPPSEGQGSLVTSWPPAFPALKEEESSEEEATAAAPSQEQEPVPAEPDGVRTPEPLEDFPKREDQEGSPPETSLPYKWVVEAANLLIPAVGSSLSEALDLIESDPDAWCDLSKFDLPEEPSAEGSVDSSPGQPQPLQQEQQAPAPRQAAAATIMVPSVTEYRLDGHTISDLSRSSRGELIPISPSTDVGGSGLGTPPSVLKRQKKRRVALSPVTENSASLSFLDSCNSLTPKSTPVKTLPFSPSQFLNFWNKQDTLELESPSLTSTPVCSQKVVVTTPLHRDKTPLHQKHAAFVTPDQKYSVDNTPHTPTPFKNALEKYGPLKPLPQTPHLEEDLKEVLRSEAGIELTIEDEARPEKQKRKSGLRRSPIKKVRKSLALDIVDEDVKLMMSTLPKPLSLPTNIPPSSSGFTPDSSLLNEGFLQAKPEKPAAQKSRGHFPAPAPMTSAWKTVACGGTRDQLFMQEKARQLLGRVKPSHTSRTLILS", "length": 697, "header": "tr|F1SDT3-1|F1SDT3_PIG Isoform 1 of Myb-related protein B OS=Sus scrofa OX=9823 GN=MYBL2 PE=4 SV=3 CANONICAL=F1SDT3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0M8-1", "url": "https://www.uniprot.org/uniprotkb/F1SDT3/entry#A0A5G2R0M8-1", "sequence": { "sequence": "MSRRTRGEELDELHYQDTDSDVPEQRDSKCKVKWTQEENRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESRDCKPPMYLLLELEDKDRQSAPPSEGQGSLVTSWPPAFPALKEEESSEEEATAAAPSQEQEPVPAEPDGVRTPEPLEDFPKREDQEGSPPETSLPYKWVVEAANLLIPAVGSSLSEALDLIESDPDAWCDLSKFDLPEEPSAEGSVDSSPGQPQPLQQEQQAPAPRQAAAATIMVPSVTEYRLDGHTISDLSRSSRGELIPISPSTDVGGSGLGTPPSVLKRQKKRRVALSPVTENSASLSFLDSCNSLTPKSTPVKTLPFSPSQFLNFWNKQDTLELESPSLTSTPVCSQKVVVTTPLHRDKTPLHQKHAAFVTPDQKYSVDNTPHTPTPFKNALEKYGPLKPLPQTPHLEEDLKEVLRSEAGIELTIEDEARPEKQKRKSGLRRSPIKKVRKSLALDIVDEDVKLMMSTLPKPLSLPTNIPPSSSGFTPDSSLLNEGFLQAKPEKPAAQKSRGHFPAPAPMTSAWKTVACGGTRDQLFMQEKARQLLGRVKPSHTSRTLILS", "length": 673, "header": "tr|A0A5G2R0M8-1|F1SDT3_PIG Computationally mapped isoform of Myb-related protein B OS=Sus scrofa OX=9823 GN=MYBL2 PE=4 SV=1 CANONICAL=F1SDT3-1" }, "locus": { "chromosome": "17", "start_pos": 46287523, "end_pos": 46256454, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082599.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082599.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069940.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069940.1" } ] } }, { "isoform_ac": "F1SDT3-1", "url": "https://www.uniprot.org/uniprotkb/F1SDT3/entry#F1SDT3-1", "sequence": { "sequence": "MSRRTRGEELDELHYQDTDSDVPEQRDSKCKVKWTQEEDEQLRALVKQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESRDCKPPMYLLLELEDKDRQSAPPSEGQGSLVTSWPPAFPALKEEESSEEEATAAAPSQEQEPVPAEPDGVRTPEPLEDFPKREDQEGSPPETSLPYKWVVEAANLLIPAVGSSLSEALDLIESDPDAWCDLSKFDLPEEPSAEGSVDSSPGQPQPLQQEQQAPAPRQAAAATIMVPSVTEYRLDGHTISDLSRSSRGELIPISPSTDVGGSGLGTPPSVLKRQKKRRVALSPVTENSASLSFLDSCNSLTPKSTPVKTLPFSPSQFLNFWNKQDTLELESPSLTSTPVCSQKVVVTTPLHRDKTPLHQKHAAFVTPDQKYSVDNTPHTPTPFKNALEKYGPLKPLPQTPHLEEDLKEVLRSEAGIELTIEDEARPEKQKRKSGLRRSPIKKVRKSLALDIVDEDVKLMMSTLPKPLSLPTNIPPSSSGFTPDSSLLNEGFLQAKPEKPAAQKSRGHFPAPAPMTSAWKTVACGGTRDQLFMQEKARQLLGRVKPSHTSRTLILS", "length": 697, "header": "tr|F1SDT3-1|F1SDT3_PIG Isoform 1 of Myb-related protein B OS=Sus scrofa OX=9823 GN=MYBL2 PE=4 SV=3 CANONICAL=F1SDT3-1" }, "locus": { "chromosome": "17", "start_pos": 46287523, "end_pos": 46256454, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008062.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008062.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007847.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007847.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0M8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0M8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LKK8-1", "protein_name": "Myb-related protein B", "gene_name": "Mybl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMVVPVFERLRQENCQPELWRPCFKKKKVGEELDELRYQDTDSDLLEQRDNKCKVKWTHEEDELLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFPNESRDCKPVYLLLELEDKDYQQNVQPVEGPGSLVSSWPLAPSTVKEEESSEEEAAVATTSKEHKQEPVPTDLGEVRTPEPLEFLKREYQEESSPETSLPYKWVVEAANLLIPAVESSLSEALDLIESDPDAWCDLSKFDLPEEPSAEGSVNSSPVQLQTPQQQQQHQQALSFHQAATPGPSVTEYRLDGHTISDLSRSSRGELIPISPSTEFGGSGIGTPPSVLKRQKKRRVALSPVTENSASLSFLDSCNSLTPKSTPVKTLPFSPSQFLNFWNKQDTLELESPSLTSTPVCSQKVVVTTPLHRDKTPLHQKYPSFVTPDQKYSMDNTPHTPTPFKNALEKYGPLKPLPQTPHLEEDLKEVLRSEAGIELIIEDDMRPEKQKRKPGLRRSPIKKVRKSLALDIVDEDGKMMSSTSPKTLSLPTSVPSSSSGFILPGIKEDNSLLNQGFLQAKPEKVVATQKPRSHIPAPAPMTRAWKTVACGGTKDQLFMQEKARQLLGRLKSSHTSRTLILS", "length": 727 }, "evidence": [ { "id": "F1SDT3", "url": "https://omabrowser.org/oma/group/F1SDT3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P10244-1", "protein_name": "Myb-related protein B", "gene_name": "MYBL2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSRRTRCEDLDELHYQDTDSDVPEQRDSKCKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFLSESKDCKPPVYLLLELEDKDGLQSAQPTEGQGSLLTNWPSVPPTIKEEENSEEELAAATTSKEQEPIGTDLDAVRTPEPLEEFPKREDQEGSPPETSLPYKWVVEAANLLIPAVGSSLSEALDLIESDPDAWCDLSKFDLPEEPSAEDSINNSLVQLQASHQQQVLPPRQPSALVPSVTEYRLDGHTISDLSRSSRGELIPISPSTEVGGSGIGTPPSVLKRQRKRRVALSPVTENSTSLSFLDSCNSLTPKSTPVKTLPFSPSQFLNFWNKQDTLELESPSLTSTPVCSQKVVVTTPLHRDKTPLHQKHAAFVTPDQKYSMDNTPHTPTPFKNALEKYGPLKPLPQTPHLEEDLKEVLRSEAGIELIIEDDIRPEKQKRKPGLRRSPIKKVRKSLALDIVDEDVKLMMSTLPKSLSLPTTAPSNSSSLTLSGIKEDNSLLNQGFLQAKPEKAAVAQKPRSHFTTPAPMSSAWKTVACGGTRDQLFMQEKARQLLGRLKPSHTSRTLILS", "length": 700 }, "evidence": [ { "id": "F1SDT3", "url": "https://omabrowser.org/oma/group/F1SDT3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P48972-1", "protein_name": "Myb-related protein B", "gene_name": "Mybl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSRRTRCEDLDELHYQDVDSDLLEQRDNRCKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRKVDTGGFPAESRDCKPVYLLLELEDKEQHQGVQPVDGQGSLVSSWPLVPSIVKEESSEEEIAIAATSAKELGHEPVPADLGEVRTPEPPESLKREYQEFSSPETSLPYKWVVEAANLLIPAVGSSLSEALDLIESDPDAWCDLSKFDLPEEPSTEGSVVSSPVQPQTSQQQQEEALQSSQQAATPGPSVTEYRLDGHTISDLSRSSRGELIPISPSTEFGGSGIGTPPSVLKRQKKRRVALSPVTENSASLSFLDSCNSLTPKSTPVKTLPFSPSQFLNFWNKQDTLELESPSLTSTPVCSQKVVVTTPLHRDKTPLHQKYPSSEVLPDQKYSMDNTPHTPTPFKNALEKYGPLKPLPQTPHLEEDLKEVLRSEAGMELIIEDDMRPEKQKRKPGLRRSPIKKVRKSLALDIMDEDGKLMSSTMPKPLSLPTSVTPSSCGFTSPGSKEGNSLLNQGFLQAKPEKVVAAQKTRSHIPTPAPMTHAWKTVACGGTKDQLFMQEKARQLLSRLKSSHTSRTLILS", "length": 704 }, "evidence": [ { "id": "F1SDT3", "url": "https://omabrowser.org/oma/group/F1SDT3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SDT3", "url": "https://www.uniprot.org/uniprotkb/F1SDT3" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SDT3", "url": "https://www.uniprot.org/uniprotkb/F1SDT3" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SDT3", "url": "https://www.uniprot.org/uniprotkb/F1SDT3" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SDT3", "url": "https://www.uniprot.org/uniprotkb/F1SDT3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SDT3", "url": "https://www.uniprot.org/uniprotkb/F1SDT3" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SDT3", "url": "https://www.uniprot.org/uniprotkb/F1SDT3" } ], "pmid": "" }, { "name": "Myb complex", "id": "GO:0031523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031523", "evidence": [ { "database": "UniProtKB", "id": "F1SDT3", "url": "https://www.uniprot.org/uniprotkb/F1SDT3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "mitotic cell cycle", "id": "GO:0000278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000278", "evidence": [ { "database": "UniProtKB", "id": "F1SDT3", "url": "https://www.uniprot.org/uniprotkb/F1SDT3" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SDT3", "url": "https://www.uniprot.org/uniprotkb/F1SDT3" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SDT3", "url": "https://www.uniprot.org/uniprotkb/F1SDT3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], 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"url": "https://alphafold.ebi.ac.uk/entry/F1SAR7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002494", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002494", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21191", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21191", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21245", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21245", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047826", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047826", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052403", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052403", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PHELFYY", "url": "https://omabrowser.org/oma/group/PHELFYY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47535", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47535", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47535:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47535:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R1F0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1F0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1F0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG20", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG20-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG20-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAR7", "url": "https://www.uniprot.org/uniprotkb/F1SAR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPEWDWFQREELIGQISDIRVQNLQVERENVQKRTFTRWVNLHLEKCNPPLEVKDLFVDIQDGKILMALLEVLSGRNLLHEYKSSSHRIFRLNNIAKALKFLEDSNVKLVSIDAAEIADGNPSLVLGLIWNIILFFQIKELTGNLSRNSPSSSLSPGSGGTDSDSSFPPTPTAERSTAIAVKDQRKAIRTLLAWVQRKTRKYGVAVQDFAGSWRSGLAFLAVIKAIDPSLVDMKQALEDSMRENLEKAFSIAQEALHIPRLLEPEDIMVDTPDEQSIVTYVAQFLEHFPELEAEDFMDSDREAPIESTFVRIRETSSEQESALFLLTENEERAYTVNHEASHPPPSKVFVCDKPEDVVERCLGGVSSQEPPDGSSESTHPIIEQVLQGVPRKISTPSEPAPESSILSSRKDTRRANSLPGKKTVHFEADTYRDAACSQDPFYSQDPRFEGSPRGSKEGSKQDGHVSAGEVAGESPKQEAPRVPAAAPAEAPGEVSLVDGKIEHPPPFQPSPSWNGASEQAASPGEEGHPLSPLGGVPVMANSLEIKVKLLTVKAMEREDYFEGIPLKASRFNSDLIEFASTSQAFNEAPSAHEKTPAEKEQVPEDPAENLGKRRDSSGHQQTDGDESPGNPDPHAPPQDAGPEEPGYSLAPQGTPVDKKPEVYEKAKRKSPRRRRGEDGEAGDPPGLGREWPSTLASSSASLETLHSASEEDLDFKPSPPLSKISVPPDLFYYPHYEVPLAAVLEAYAEGPEDLKSQEMDLEEPEGYPPGLGAREDEDEDEEAEPSQSSCSFPGLGEDRPQASIAEDARRASVPTPPARREDDQPREPAENVPVPDQQSQEFANSENLANPLEEKVKEESISSKKKEKRKHVDHVESSVFIAPGTVRSSDDLEEDISDHRVISRTSHSDSSIYIRRHTNRSLESDQVSYVQLRNAADLDDRRNRTLTRKANNSGEAGLQEGRGPQSDSLAQLVQQPDVMYFLLFLWLLVYCLLLFPQLDVNRL", "length": 1005, "header": "tr|F1SAR7-1|F1SAR7_PIG Isoform 1 of Calmin OS=Sus scrofa OX=9823 GN=CLMN PE=1 SV=2 CANONICAL=F1SAR7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R1F0-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR7/entry#A0A5G2R1F0-1", "sequence": { "sequence": 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"tr|A0A5G2R1F0-1|F1SAR7_PIG Computationally mapped isoform of Calmin OS=Sus scrofa OX=9823 GN=CLMN PE=1 SV=2 CANONICAL=F1SAR7-1" }, "locus": { "chromosome": "7", "start_pos": 116590143, "end_pos": 116477944, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076828.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076828.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064347.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064347.2" } ] } }, { "isoform_ac": "A0A8W4FG20-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR7/entry#A0A8W4FG20-1", "sequence": { "sequence": "MRKHLPRRSRCPRIPLRTWGKGGTALATSRRMGMSPQGTPTRTHLPRMPGPKNQVIPWPPRGRQWTKSLKCMKRPSGSPRGAVGGRMGGSGGSPGAGARVAFHPGKQQRQPGDPPQCQRGRPGFQAVSTAVQDFRHPPDLFYYPHYEVPLAAVLEAYAEGPEDLKSQEMDLEEPEGYPPGLGAREDEDEDEEAEPSQSSCSFPGLGEDRPQASIAEDARRASVPTPPARREDDQPREPAENVPVPDQQSQEFANSENLANPLEEKVKEESISSKKKEKRKHVDHVESSVFIAPGTVRSSDDLEEDISDHRVISRTSHSDSSIYIRRHTNRSLESDQVSYVQLRNAADLDDRRNRTLTRYNTQKLTELILQFYGISADMKRGCRHARMPMKANNSGEAGLQEGRGPQSDSLAQLVQQPDVMYFLLFLWLLVYCLLLFPQLDVNRL", "length": 444, "header": "tr|A0A8W4FG20-1|F1SAR7_PIG Computationally mapped isoform of Calmin OS=Sus scrofa OX=9823 GN=CLMN PE=1 SV=1 CANONICAL=F1SAR7-1" }, "locus": { "chromosome": "7", "start_pos": 116489617, "end_pos": 116477944, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096092.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096092.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078190.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078190.1" } ] } }, { "isoform_ac": "F1SAR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR7/entry#F1SAR7-1", "sequence": { "sequence": "MAAPEWDWFQREELIGQISDIRVQNLQVERENVQKRTFTRWVNLHLEKCNPPLEVKDLFVDIQDGKILMALLEVLSGRNLLHEYKSSSHRIFRLNNIAKALKFLEDSNVKLVSIDAAEIADGNPSLVLGLIWNIILFFQIKELTGNLSRNSPSSSLSPGSGGTDSDSSFPPTPTAERSTAIAVKDQRKAIRTLLAWVQRKTRKYGVAVQDFAGSWRSGLAFLAVIKAIDPSLVDMKQALEDSMRENLEKAFSIAQEALHIPRLLEPEDIMVDTPDEQSIVTYVAQFLEHFPELEAEDFMDSDREAPIESTFVRIRETSSEQESALFLLTENEERAYTVNHEASHPPPSKVFVCDKPEDVVERCLGGVSSQEPPDGSSESTHPIIEQVLQGVPRKISTPSEPAPESSILSSRKDTRRANSLPGKKTVHFEADTYRDAACSQDPFYSQDPRFEGSPRGSKEGSKQDGHVSAGEVAGESPKQEAPRVPAAAPAEAPGEVSLVDGKIEHPPPFQPSPSWNGASEQAASPGEEGHPLSPLGGVPVMANSLEIKVKLLTVKAMEREDYFEGIPLKASRFNSDLIEFASTSQAFNEAPSAHEKTPAEKEQVPEDPAENLGKRRDSSGHQQTDGDESPGNPDPHAPPQDAGPEEPGYSLAPQGTPVDKKPEVYEKAKRKSPRRRRGEDGEAGDPPGLGREWPSTLASSSASLETLHSASEEDLDFKPSPPLSKISVPPDLFYYPHYEVPLAAVLEAYAEGPEDLKSQEMDLEEPEGYPPGLGAREDEDEDEEAEPSQSSCSFPGLGEDRPQASIAEDARRASVPTPPARREDDQPREPAENVPVPDQQSQEFANSENLANPLEEKVKEESISSKKKEKRKHVDHVESSVFIAPGTVRSSDDLEEDISDHRVISRTSHSDSSIYIRRHTNRSLESDQVSYVQLRNAADLDDRRNRTLTRKANNSGEAGLQEGRGPQSDSLAQLVQQPDVMYFLLFLWLLVYCLLLFPQLDVNRL", "length": 1005, "header": "tr|F1SAR7-1|F1SAR7_PIG Isoform 1 of Calmin OS=Sus scrofa OX=9823 GN=CLMN PE=1 SV=2 CANONICAL=F1SAR7-1" }, "locus": { "chromosome": "7", "start_pos": 116590143, "end_pos": 116477944, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002772.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002772.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002701.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002701.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 172, "start_aa": "Thr", "end_pos": 172, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr172", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 174, "start_aa": "Thr", "end_pos": 174, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr174", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 817, "start_aa": "Thr", "end_pos": 817, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr817", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1F0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1F0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZQ75-1", "protein_name": "Calmin", "gene_name": "Clmn", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAQEWDWFQREELIGQISDIRVQNLQVERENVQKRTFTRWINLHLEKCDPPLEVTDLFVDIQDGKILMALLEVLSGRNLLHEYKSSSHRIFRLNNIAKALKFLEDSNVKLVSIDAAEIADGNPSLVLGLIWNIILFFQIKELTGNLSRSSPSSSLSPGSGGTDSDSSYPPTPTTERSVAVAVKDQRKAIKTLLSWVQRKTRKYGVAVQDFAGSWRSGLAFLAVIKAIDPSLVDMKQALEDSTRENLEKAFRIAHDSLHIPRLLEPEDIMVDMPDEQSIVTYVAQFLERFPELDPEDFVNPDKEAPIESTFVRIKESPSEQESRVLLLSQNGEQPYTVSHETSHPPPDKVFVCDQLESPTGFSLGSAPSHKLPDSPTDFMHQIIDQVFQASMGNTESTTEPTPESSILSTRKDGRRSNSLPVKKSVHFETDLHKDASCSKDPFYSSEFRFEGSPKATKELSKQDGHASLAEVSKEKKPEQEARLVLEAASDKAPEDTIVDTDAMSQDAQLPQDSSFCNGNVENPASLGEKGPSPPSPRDNTILANSVELKVPLLTVEPMDKDDYFECIPLKASKFNRDLVDFASTSQAFVEDPSSHKKTPGEEEGSENYTEKPGKRKSKSPHAETESTESRLEPIKLETPPKDPEQEDQGHTLPPETAADKKPEVYEKAKRKSTRHHSEEEGEAEGGLSAVGGEMPSNPPSTSVSLETLRSHSEEGLDFKPSPPLSKISVIPHDLFYYPHYEVPLAAVLEAYAEGGEDLKSEDADLEHPDGSYLQDSREEEEEEDEEEEEAHSSHSSCNFSLPVDNSYPRVNDHVSHVDGSSEGPTSASEPGSPPSHEDHQPMETKENGPVESQQSQEPPTPELSTKPLEEKLTEVPTSSKKKEKRKHMDHVESSLFIAPGTVRSSDDLEENPCEHKVPSRNSHSDSSIYIRRHTNRSLELDHFSYVQLRNAADVDDRRNRLLNRYNSQKLTELILQFYGIRADMKREYKHTRLSMKVFVTGGELSCLVDSSRVTVDWHQLLWRSRAPGEPEPAQRLSDAVCTAARRDIFHSLPLAPGLLLTTLPPARCQPALKHSSGE", "length": 1079 }, "evidence": [ { "id": "F1SAR7", "url": "https://omabrowser.org/oma/group/F1SAR7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8C5W0-1", "protein_name": "Calmin", "gene_name": "Clmn", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAQEWDWFQREELIGQISDIRVQNLQVERENVQKRTFTRWINLHLEKCDPPLEVTDLFVDIQDGKILMALLEVLSGRNLLHEYKSSSHRIFRLNNIAKALKFLEDSNVKLVSIDAAEIADGNPSLVLGLIWNIILFFQIKELTGNLSRSSPSSSLSPGSGGTDSDSSYPPTPTTERSVAVAVKDQRKAIKTLLSWVQRKTRKYGVAVQDFAGSWRSGLAFLAVIKAIDPSLVDMKQALEDSTRDNLEKAFSIAHDSLHIPRLLEPEDIMVDMPDEQSIVTYVAQFLERFPELEPEDFVNPDKEAPIESTFVRIKESPSEQGSRVLLLSENGERAYTVNQETSYPPPDKVFVCDQLESPTGFCLDSAPSHKLSDSSTEFMHEIIDQVLQGSTGKTGSIAEPTPESSILSTRKDGRRSNSLPVKKTVHFEADLHKDASCSKDPFYSSDFRFEGSPKATKELSKQDGHVSLAEVSKEKKKSEQEARLVLEAASDKVPESTVDGLDAVPQDAQPSQDSSFCNGTVESPSSQGEKGPPPSSPGDHTLLANSTELKVQLLTVEPMDKEDYFECIPLKASKFNRDLVDFASTSQAFGEDPSSHEKTRGEEEGSENHAEKPGKRKSKSPRAETEAAESRLEPKKLEPPPKDPEQEDQGHALPPETPADKKPKVYEKAKRKSTRHHSEEEGEAESGFSAVCEEEIPSAPPSTSVSLETLRSHSEEGLDFKPSPPLSKISVIPHDLFYYPHYEVPLAAVLEAYAEGGEDLKSEDTDLEHPEDSYLQDSREEEADEDEEEAQSSQSSCSFSLPVDNSYPSVSEHVSHVDGSSEGPTSALGPGSPPSHEDHQPKETKENGPVESQQSQEPPNPELPTKPLEEKLTEASTSSKKKEKRKHMDHVESSLFIAPGTVRSSDDLEENSSEHKVPSRNSHSDSSIYIRRHTNRSLELDHFSYVQLRNAADLDDRRNRVLNRYNSQKLTELILQFYGIRADMKREYKHARLSMTGTNSSGEAVPLGNQSPPNDSLTQFVQQPDVIYFILFLWLLVYCLLLFPQLDVSRL", "length": 1052 }, "evidence": [ { "id": "F1SAR7", "url": "https://omabrowser.org/oma/group/F1SAR7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96JQ2-1", "protein_name": "Calmin", "gene_name": "CLMN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAHEWDWFQREELIGQISDIRVQNLQVERENVQKRTFTRWINLHLEKCNPPLEVKDLFVDIQDGKILMALLEVLSGRNLLHEYKSSSHRIFRLNNIAKALKFLEDSNVKLVSIDAAEIADGNPSLVLGLIWNIILFFQIKELTGNLSRNSPSSSLSPGSGGTDSDSSFPPTPTAERSVAISVKDQRKAIKALLAWVQRKTRKYGVAVQDFAGSWRSGLAFLAVIKAIDPSLVDMKQALENSTRENLEKAFSIAQDALHIPRLLEPEDIMVDTPDEQSIMTYVAQFLERFPELEAEDIFDSDKEVPIESTFVRIKETPSEQESKVFVLTENGERTYTVNHETSHPPPSKVFVCDKPESMKEFRLDGVSSHALSDSSTEFMHQIIDQVLQGGPGKTSDISEPSPESSILSSRKENGRSNSLPIKKTVHFEADTYKDPFCSKNLSLCFEGSPRVAKESLRQDGHVLAVEVAEEKEQKQESSKIPESSSDKVAGDIFLVEGTNNNSQSSSCNGALESTARHDEESHSLSPPGENTVMADSFQIKVNLMTVEALEEGDYFEAIPLKASKFNSDLIDFASTSQAFNKVPSPHETKPDEDAEAFENHAEKLGKRSIKSAHKKKDSPEPQVKMDKHEPHQDSGEEAEGCPSAPEETPVDKKPEVHEKAKRKSTRPHYEEEGEDDDLQGVGEELSSSPPSSCVSLETLGSHSEEGLDFKPSPPLSKVSVIPHDLFYFPHYEVPLAAVLEAYVEDPEDLKNEEMDLEEPEGYMPDLDSREEEADGSQSSSSSSVPGESLPSASDQVLYLSRGGVGTTPASEPAPLAPHEDHQQRETKENDPMDSHQSQESPNLENIANPLEENVTKESISSKKKEKRKHVDHVESSLFVAPGSVQSSDDLEEDSSDYSIPSRTSHSDSSIYLRRHTHRSSESDHFSYVQLRNAADLDDRRNRILTRKANSSGEAMSLGSHSPQSDSLTQLVQQPDMMYFILFLWLLVYCLLLFPQLDVSRL", "length": 1002 }, "evidence": [ { "id": "F1SAR7", "url": "https://omabrowser.org/oma/group/F1SAR7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "F1SAR7", "url": "https://www.uniprot.org/uniprotkb/F1SAR7" } ], "pmid": "" }, { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "F1SAR7", "url": "https://www.uniprot.org/uniprotkb/F1SAR7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SAR7", "url": "https://www.uniprot.org/uniprotkb/F1SAR7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SAR7", "url": "https://www.uniprot.org/uniprotkb/F1SAR7" } ], "pmid": "" }, { "name": "nuclear outer membrane", "id": "GO:0005640", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005640", "evidence": [ { "database": "UniProtKB", "id": "F1SAR7", "url": "https://www.uniprot.org/uniprotkb/F1SAR7" } ], "pmid": "" }, { "name": "meiotic nuclear membrane microtubule tethering complex", "id": "GO:0034993", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034993", "evidence": [ { "database": "UniProtKB", "id": "F1SAR7", "url": "https://www.uniprot.org/uniprotkb/F1SAR7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of cell population proliferation", "id": "GO:0008285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008285", "evidence": [ { "database": "UniProtKB", "id": "F1SAR7", "url": "https://www.uniprot.org/uniprotkb/F1SAR7" } ], "pmid": "" }, { "name": "nuclear migration", "id": "GO:0007097", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007097", "evidence": [ { "database": "UniProtKB", "id": "F1SAR7", "url": "https://www.uniprot.org/uniprotkb/F1SAR7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" }, { "start_pos": 921, "end_pos": 923, "annotation": "n_glycosylation_sequon" }, { "start_pos": 945, "end_pos": 947, "annotation": "n_glycosylation_sequon" }, { "start_pos": 953, "end_pos": 955, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAR7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1005, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAR7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAR7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAR7" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 32, "end_pos": 139, "start_aa": "Asn", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 172, 174, 817 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 146, "end_pos": 148 }, { "start_pos": 921, "end_pos": 923 }, { "start_pos": 945, "end_pos": 947 }, { "start_pos": 953, "end_pos": 955 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SBS3-1", "uniprot_ac": "F1SBS3", "uniprot_id": "F1SBS3_PIG", "mass": { "chemical_mass": 111288.0, "monoisotopic_mass": 111288.0 }, "refseq": {}, "gene_names": [ { "name": "SYCP1", "type": "recommended", "evidence": [ { "id": "F1SBS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBS3" } ] } ], "protein_names": [ { "name": "Synaptonemal complex protein 1", "type": "synonym", "evidence": [ { "id": "F1SBS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBS3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBS3", "url": "https://www.uniprot.org/uniprotkb/F1SBS3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SYCP1", "url": "https://www.uniprot.org/uniprotkb/F1SBS3", "locus": { "chromosome": "4", "start_pos": 105591743, "end_pos": 105730398, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006750", "url": "https://www.ensembl.org/id/ENSSSCG00000006750" } ] } } ], "crossref": [ { "id": "F1SBS3", "url": "https://alphafold.ebi.ac.uk/entry/F1SBS3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006750", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006750", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46918", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46918", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46918:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46918:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05483", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05483", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R7S6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7S6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7S6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBS3", "url": "https://www.uniprot.org/uniprotkb/F1SBS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBS3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBS3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKQKPFKLFVPPRLSSSQVSAVKPQTLGGDSKFFKGFNKCVEDDFGFPFVVTNLSKNGENIDSDPALQKVNFLPMLEQVDNSDSCHYQEGLKDSDFENSEPMSRLYSKLYKEAEKIKKWKVGVESELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEGIQENKDLIKEYEREETRQVYVDLNSNIEKMIIAFEELRVQAENSRLEMHFKLKEDYEKIQHLEEEYKKEVNDKEKQVSLLLIQNTEQENKMKDLTFLLEESRNKVNQLEEKTKLQNENLKESNEKQDHLTSELEDIKISLQRSVGTQKAFEEDLQIATKKIYQLTGEKEAQMEEFNKAKASHSFVVTELNTTICNLKELLTTEQQRLEKSEDELKVLTMELQKKACELEEMTKLKNNKEVELEEMKEILAEKQKLLDEKKQFEKISEELRQAEQELTGLLQTREKKIHDLEIQLAAIATSEQHYSKQVKELKTELENEKFKNAELTVSCNKLSQEKKELAQEASDMALEIKKHQEDIKNSRKQEERMLKQIENLEETETQLRNELESVKEELKQKGDEVKCKLDKSEENCNSLRKQIENKSKFIEELQQENKAFKKKNTADSKQLNVYEIKVSKLELELESTKQKFKEMTDIYQKEIEDKKLSEENLLGEVDKAKVIADEAVKLQKEIDIRCQHKIAEMVALMEKHKHQYDKIVEERDSELGLYKSREQEQSSIKTSLETELSNLKNEIGSVKKQLKMEREEKEKLKREAKENIVTLKGKKDKKTQTSLVETPETGYWKFDSKAAPSQNRSRNFSSAHHGKSKDNGDYLWTSAKNTLSTPLPKAYTVKTPTKSQIQQRENKNVPMEESNKKRKMVFEFDINSDSSETTDLLSMVSEEDTLKKLYKNNNPPISHLCVRTPKKTPSSLTTPGSTLKFGAMRKMREDRWAVIAKMDRKQKLKEAEKLFV", "length": 952, "header": "tr|F1SBS3-1|F1SBS3_PIG Isoform 1 of Synaptonemal complex protein 1 OS=Sus scrofa OX=9823 GN=SYCP1 PE=4 SV=4 CANONICAL=F1SBS3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R7S6-1", "url": "https://www.uniprot.org/uniprotkb/F1SBS3/entry#A0A5G2R7S6-1", "sequence": { "sequence": "MEKQKPFKLFVPPRLSSSQVSAVKPQTLGGDSKFFKGFNKCVEDDFGFPFVVTNLSKNGENIDSDPALQKVNFLPMLEQVDNSDSCHYQEGLKDSDFENSEPMSRLYSKLYKEAEKIKKWKVGVESELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEGIQENKDLIKEYEREETRQVYVDLNSNIEKMIIAFEELRVQAENSRLEMHFKLKEDYEKIQHLEEEYKKEVNDKEKQVSLLLIQNTEQENKMKDLTFLLEESRNKVNQLEEKTKLQNENLKESNEKQDHLTSELEDIKISLQRSVGTQKAFEEDLQIATKKIYQLTGEKEAQMEEFNKAKASHSFVVTELNTTICNLKELLTTEQQRLEKSEDELKVLTMELQKKACELEEMTKLKNNKEVELEEMKEILAEKQKLLDEKKQFEKISEELRQAEQELTGLLQTREKKIHDLEIQLAAIATSEQHYSKQVKELKTELENEKFKNAELTVSCNKLSQEKKELAQEASDMALEIKKHQEDIKNSRKQEERMLKQIENLEETETQLRNELESVKEELKQKGDEVKCKLDKSEENCNSLRKQIENKSKFIEELQQENKAFKKKNTADSKQLNVYEIKVSKLELELESTKQKFKEMTDIYQKEIEDKKLSEENLLGEVDKAKVIADEAVKLQKEIDIRCQHKIAEMVALMEKHKHQYDKIVEERDSELGLYKSREQEQSSIKTSLEKLKREAKENIVTLKGKKDKKTQTSLVETPETGYWKFDSKAAPSQNRSRNFSSAHHGKSKDNGDYLWTSAKNTLSTPLPKAYTVKTPTKSQIQQRENKNVPMEESNKKRKMVFEFDINSDSSETTDLLSMVSEEDTLKKLYKNNNPPISHLCVRTPKKTPSSLTTPGSTLKFGAMRKMREDRWAVIAKMDRKQKLKEAEKLFV", "length": 927, "header": "tr|A0A5G2R7S6-1|F1SBS3_PIG Computationally mapped isoform of Synaptonemal complex protein 1 OS=Sus scrofa OX=9823 GN=SYCP1 PE=4 SV=2 CANONICAL=F1SBS3-1" }, "locus": { "chromosome": "4", "start_pos": 105729746, "end_pos": 105592747, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072321.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072321.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066651.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066651.2" } ] } }, { "isoform_ac": "F1SBS3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBS3/entry#F1SBS3-1", "sequence": { "sequence": "MEKQKPFKLFVPPRLSSSQVSAVKPQTLGGDSKFFKGFNKCVEDDFGFPFVVTNLSKNGENIDSDPALQKVNFLPMLEQVDNSDSCHYQEGLKDSDFENSEPMSRLYSKLYKEAEKIKKWKVGVESELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEGIQENKDLIKEYEREETRQVYVDLNSNIEKMIIAFEELRVQAENSRLEMHFKLKEDYEKIQHLEEEYKKEVNDKEKQVSLLLIQNTEQENKMKDLTFLLEESRNKVNQLEEKTKLQNENLKESNEKQDHLTSELEDIKISLQRSVGTQKAFEEDLQIATKKIYQLTGEKEAQMEEFNKAKASHSFVVTELNTTICNLKELLTTEQQRLEKSEDELKVLTMELQKKACELEEMTKLKNNKEVELEEMKEILAEKQKLLDEKKQFEKISEELRQAEQELTGLLQTREKKIHDLEIQLAAIATSEQHYSKQVKELKTELENEKFKNAELTVSCNKLSQEKKELAQEASDMALEIKKHQEDIKNSRKQEERMLKQIENLEETETQLRNELESVKEELKQKGDEVKCKLDKSEENCNSLRKQIENKSKFIEELQQENKAFKKKNTADSKQLNVYEIKVSKLELELESTKQKFKEMTDIYQKEIEDKKLSEENLLGEVDKAKVIADEAVKLQKEIDIRCQHKIAEMVALMEKHKHQYDKIVEERDSELGLYKSREQEQSSIKTSLETELSNLKNEIGSVKKQLKMEREEKEKLKREAKENIVTLKGKKDKKTQTSLVETPETGYWKFDSKAAPSQNRSRNFSSAHHGKSKDNGDYLWTSAKNTLSTPLPKAYTVKTPTKSQIQQRENKNVPMEESNKKRKMVFEFDINSDSSETTDLLSMVSEEDTLKKLYKNNNPPISHLCVRTPKKTPSSLTTPGSTLKFGAMRKMREDRWAVIAKMDRKQKLKEAEKLFV", "length": 952, "header": "tr|F1SBS3-1|F1SBS3_PIG Isoform 1 of Synaptonemal complex protein 1 OS=Sus scrofa OX=9823 GN=SYCP1 PE=4 SV=4 CANONICAL=F1SBS3-1" }, "locus": { "chromosome": "4", "start_pos": 105729746, "end_pos": 105592747, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007395.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007395.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007200.5", "url": "https://www.ensembl.org/id/ENSSSCP00000007200.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R7S6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7S6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "synaptonemal complex assembly", "id": "GO:0007130", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007130", "evidence": [ { "database": "UniProtKB", "id": "F1SBS3", "url": "https://www.uniprot.org/uniprotkb/F1SBS3" } ], "pmid": "" }, { "name": "protein homotetramerization", "id": "GO:0051289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051289", "evidence": [ { "database": "UniProtKB", 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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9663492", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9663492" } ] }, { "id": "R-SSC-9663511", "name": "BIL binds GSTA1, FABP1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9663511", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9663511" } ] }, { "id": "R-SSC-9748996", "name": "GST dimers cleave AZA to 6MP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-9748994" ], "output_participant_list": [ "R-ALL-9748975" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9748996", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9748996" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-9748975", "participant_name": "GS-nitroimidazole [cytosol]", "crossref": [ { "id": "180931", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-9748994", "participant_name": "AZA [cytosol]", "crossref": [ { "id": "7120", "database": "Guide to Pharmacology - Ligands", "url": "" }, { "id": "2948", "database": "ChEBI", "url": "" }, { "id": "PDBC00620", "database": "PharmacoDB", "url": "" }, { "id": "0005101", "database": "Mondo", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S7C9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 298, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S7C9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S7C9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S7C9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7C9" }, { "id": "PS50405", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50405" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GST C-terminal", "eco_id": "ECO_0000259", "start_pos": 160, "end_pos": 283, "start_aa": "Asp", "end_aa": "Met", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1S7C9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7C9" }, { "id": "PS50404", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50404" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GST N-terminal", "eco_id": "ECO_0000259", "start_pos": 78, "end_pos": 158, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SC53-1", "uniprot_ac": "F1SC53", "uniprot_id": "F1SC53_PIG", "mass": { "chemical_mass": 66432.0, "monoisotopic_mass": 66432.0 }, "refseq": { "ac": "XP_001929182", "name": "nuclear receptor coactivator 5 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929182" }, "gene_names": [ { "name": "NCOA5", "type": "recommended", "evidence": [ { "id": "F1SC53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC53" } ] }, { "name": "NCOA5", "type": "synonym", "evidence": [ { "id": "XP_001929182", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929182" } ] } ], "protein_names": [ { "name": "Nuclear receptor coactivator 5", "type": "recommended", "evidence": [ { "id": "F1SC53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC53/entry#names_and_taxonomy" } ] }, { "name": "Coactivator independent of AF-2", "type": "synonym", "evidence": [ { "id": "F1SC53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC53/entry#names_and_taxonomy" } ] }, { "name": "nuclear receptor coactivator 5 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001929182", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929182" } ] } ], "function": [ { "annotation": "Nuclear receptor coregulator that can have both coactivator and corepressor functions. Interacts with nuclear receptors for steroids (ESR1 and ESR2) independently of the steroid binding domain (AF-2) of the ESR receptors, and with the orphan nuclear receptor NR1D2. Involved in the coactivation of nuclear steroid receptors (ER) as well as the corepression of MYC in response to 17-beta-estradiol (E2).", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0N8D4", "url": "https://www.uniprot.org/uniprotkb/A0A8D0N8D4#function" }, { "database": "UniProtKB", "id": "ARBA00057771", "url": "https://www.uniprot.org/uniprotkb/ARBA00057771#function" }, { "database": "UniProtKB", "id": "A0A8D0NB08", "url": "https://www.uniprot.org/uniprotkb/A0A8D0NB08#function" }, { "database": "UniProtKB", "id": "A0A8W4F8W7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8W7#function" }, { "database": "UniProtKB", "id": "F1SC53", "url": "https://www.uniprot.org/uniprotkb/F1SC53#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SC53", "url": "https://www.uniprot.org/uniprotkb/F1SC53" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NCOA5", "url": "https://www.uniprot.org/uniprotkb/F1SC53", "locus": { "chromosome": "17", "start_pos": 48231497, "end_pos": 48263944, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007438", "url": "https://www.ensembl.org/id/ENSSSCG00000007438" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007438", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007438", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156384", "url": "https://www.ncbi.nlm.nih.gov/gene/100156384", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR036621", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036621", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052600", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052600", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156384", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156384", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PMEEGVR", "url": "https://omabrowser.org/oma/group/PMEEGVR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SC53", "url": "https://www.orthodb.org/?gene=F1SC53", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23295", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23295", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23295:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23295:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_001929182", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929182", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8D0N8D4", "url": "https://www.uniprot.org/uniprotkb/A0A8D0N8D4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0N8D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0N8D4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0NB08", "url": "https://www.uniprot.org/uniprotkb/A0A8D0NB08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0NB08-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0NB08-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8W7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8W7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8W7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8W7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC53", "url": "https://www.uniprot.org/uniprotkb/F1SC53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC53-1", "url": "https://www.uniprot.org/uniprotkb/F1SC53-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNTAPSRPSPTRRDPYGFGDSRDTRRDRSPIRGSPRREPRDGRNGRDARDSRDMRDMRDMRDPRDLRDHRDSRDMRDHRDSRSMRDARDLRDLRDFRDLRDSRDFRDHRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPENQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNECREKEREEIARQAAKMADEAILQERERGGPDEGMRGGHPPAIQSLINLLADNRYLTAEETDKIINYLRERKERLMRSSTDSLPGPISRQPLGASSGASLKTQPSSQPLQSGQVLPSATPTPAAAPTSQQELQAKILSLFNSGTVAANSSSASPSVAAGNTQNQNFSTAANSQPQQRSQASGNQPPNILGQAGSARNMGPRPGAPSQGLFGQPSTRLAPASNLASQRPVSSTAINFDNPSVQKALDTLIQSGPALSHLVSQTTAQVGRPQAPMGSYQRHY", "length": 585, "header": "tr|F1SC53-1|F1SC53_PIG Isoform 1 of Nuclear receptor coactivator 5 OS=Sus scrofa OX=9823 GN=NCOA5 PE=1 SV=1 CANONICAL=F1SC53-1" }, "isoforms": [ { "isoform_ac": "A0A8D0N8D4-1", "url": "https://www.uniprot.org/uniprotkb/F1SC53/entry#A0A8D0N8D4-1", "sequence": { "sequence": "INTGPQDPYGFGDSRDTRRDRSPIRGSPRREPRDGRNGRDARDSRDMRDMRDMRDPRDLRDHRDSRDMRDHRDSRSMRDARDLRDLRDFRDLRDSRDFRDHRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPENQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNECREKEREEIARQAAKMADEAILQERERGGPDEGMRGGHPPAIQSLINLLADNRYLTAEETDKIINYLRERKERLMRSSTDSLPGPISRQPLGASSGASLKTQPSSQPLQSGQVLPSATPTPAAAPTSQQELQAKILSLFNSGTVAANSSSASPSVAAGNTQNQNFSTAANSQPQQRSQASGNQPPNILGQAGSARNMGPRPGAPSQGLFGQPSTRLAPASNLASQRPVSSTAINFDNPSVQKALDTLIQSGPALSHLVSQTTAQVGRPQAPMGSYQRHY", "length": 578, "header": "tr|A0A8D0N8D4-1|F1SC53_PIG Computationally mapped isoform of Nuclear receptor coactivator 5 OS=Sus scrofa OX=9823 GN=NCOA5 PE=1 SV=1 CANONICAL=F1SC53-1" }, "locus": { "chromosome": "17", "start_pos": 48241930, "end_pos": 48232865, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053384.2", "url": "https://www.ensembl.org/id/ENSSSCT00000053384.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042777.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042777.2" } ] } }, { "isoform_ac": "A0A8D0NB08-1", "url": "https://www.uniprot.org/uniprotkb/F1SC53/entry#A0A8D0NB08-1", "sequence": { "sequence": "MNTAPSRPSPTRRDPYGFGDSRDTRRDRSPIRGSPRREPRDGRNGRDARDSRDMRDMRDMRDPRDLRDHRDSRDMRDHRDSRSMRDARDLRDLRDFRDLRDSRDFRDHRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPENQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNECREKEREEIARQAAKMADEAILQERERGGPDEGMRGGHPPAIQSLINLLADNRYLTAEETDKIINYLRERKERLMRSSTDSLPGPISRQPLGASSGASLKTQPSSQPLQSGQVLPSATPTPAAAPTSQQELQAKILSLFNSGTVAANSSSASPSVAAGNTQNQNFSTAANSQPVSSTAINFDNPSVQKALDTLIQSGPALSHLVSQTTAQVGRPQAPMGSYQRHY", "length": 531, "header": "tr|A0A8D0NB08-1|F1SC53_PIG Computationally mapped isoform of Nuclear receptor coactivator 5 OS=Sus scrofa OX=9823 GN=NCOA5 PE=1 SV=1 CANONICAL=F1SC53-1" }, "locus": { "chromosome": "17", "start_pos": 48251305, "end_pos": 48232865, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088143.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088143.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066470.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066470.1" } ] } }, { "isoform_ac": "A0A8W4F8W7-1", "url": "https://www.uniprot.org/uniprotkb/F1SC53/entry#A0A8W4F8W7-1", "sequence": { "sequence": "LATSHRDPYGFGDSRDTRRDRSPIRGSPRREPRDGRNGRDARDSRDMRDMRDMRDPRDLRDHRDSRDMRDHRDSRSMRDARDLRDLRDFRDLRDSRDFRDHRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPENQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNECREKEREEIARQAAKMADEAILQERERGGPDEGMRGGHPPAIQSLINLLADNRYLTAEETDKIINYLRERKERLMRSSTDSLPGPISRQPLGASSGASLKTQPSSQPLQSGQVLPSATPTPAAAPTSQQELQAKILSLFNSGTVAANSSSASPSVAAGNTQNQNFSTAANSQPQQRSQASGNQPPNILGQAGSARNMGPRPGAPSQGLFGQPSTRLAPASNLASQRPVSSTAINFDNPSVQKALDTLIQSGPALSHLVSQTTAQVGRPQAPMGSYQRHY", "length": 578, "header": "tr|A0A8W4F8W7-1|F1SC53_PIG Computationally mapped isoform of Nuclear receptor coactivator 5 OS=Sus scrofa OX=9823 GN=NCOA5 PE=1 SV=1 CANONICAL=F1SC53-1" }, "locus": { "chromosome": "17", "start_pos": 48241688, "end_pos": 48232865, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102162.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102162.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075765.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075765.1" } ] } }, { "isoform_ac": "F1SC53-1", "url": "https://www.uniprot.org/uniprotkb/F1SC53/entry#F1SC53-1", "sequence": { "sequence": "MNTAPSRPSPTRRDPYGFGDSRDTRRDRSPIRGSPRREPRDGRNGRDARDSRDMRDMRDMRDPRDLRDHRDSRDMRDHRDSRSMRDARDLRDLRDFRDLRDSRDFRDHRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPENQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNECREKEREEIARQAAKMADEAILQERERGGPDEGMRGGHPPAIQSLINLLADNRYLTAEETDKIINYLRERKERLMRSSTDSLPGPISRQPLGASSGASLKTQPSSQPLQSGQVLPSATPTPAAAPTSQQELQAKILSLFNSGTVAANSSSASPSVAAGNTQNQNFSTAANSQPQQRSQASGNQPPNILGQAGSARNMGPRPGAPSQGLFGQPSTRLAPASNLASQRPVSSTAINFDNPSVQKALDTLIQSGPALSHLVSQTTAQVGRPQAPMGSYQRHY", "length": 585, "header": "tr|F1SC53-1|F1SC53_PIG Isoform 1 of Nuclear receptor coactivator 5 OS=Sus scrofa OX=9823 GN=NCOA5 PE=1 SV=1 CANONICAL=F1SC53-1" }, "locus": { "chromosome": "17", "start_pos": 48251305, "end_pos": 48232865, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008142.3", "url": "https://www.ensembl.org/id/ENSSSCT00000008142.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007926.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007926.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 426, "start_aa": "Thr", "end_pos": 426, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr426", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0N8D4", "url": "https://www.uniprot.org/uniprotkb/A0A8D0N8D4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156384", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156384", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M1S1-1", "protein_name": "Nuclear receptor coactivator 5", "gene_name": "NCOA5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNTAPSRPSPTRRDPYGFGDSRDTRRDRSPIRGSPRREPRDGRNGRDARDGRDMRDPRDLRDHRDSRDIRDHRDSRSMRDARDMRDLRDFRDLRETRNFRDHRDPMYDRYREMRDSRDPILRREGSYDRYLRMDDYCRRKDDAYFDRYRDSFDGRGPPGPESQSRVKERLKREERRREELYRQYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNECREKEREEIARQAAKMADEAILQERERGGPEEGMRGGHPPAIQSLLNLLADNRYLTAEETDKIINYLRERKERLMRSSTDSLPGPISRQPLGATSGASLKTQPSSQPLQSGQVLPSATPTPAAPPTSQQELQAKILSLFNSGTVAANSGSASPSVAAGNTQNQNFSTAANSQPQQRSQASGNQPPSILGQAGSARNMGPRPGAPSQGLFGQPSTLLAPASNLASQRPVSSTSINFDNPSVQKALDTLIQSGPALSHLVSQTTAQVRQPQAPLGSFQRHY", "length": 579 }, "evidence": [ { "id": "F1SC53", "url": "https://omabrowser.org/oma/group/F1SC53/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V0YKC6-1", "protein_name": "Nuclear receptor coactivator 5", "gene_name": "NCOA5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRPMKRCCSATLLHSRTSSEPCPKSWIWNESKMARGRKSNSIKQSDFTNSTNPQDLERRLFVGNLPTDHMTREEMEEIFSKYGKIRALSMYHGYGFVQYDRLEDVQAALDGEKGRLYKGYRLDINKAAERRNMNKASSRSSPARREPYAYGDGRDNRRDRSPLRGSPRRDPRDGRDGRNGRDSRDTRDIRARDIRDARDHRDPRDLRDLRDPRDIRDPRDLRDPRDVRDFRDPREPLYDRYRDPRDMRNPRDMRDPRDMRDPRDMRDPRDPLYRRDEPYDRYLRMDDYYRRKDDSYYDRYKEHFDRAPVNSEDRLKREERRREELYRQYYEEIKRRFDAERPVDCSVIVVDKQTKEYAESVGRKVRDLGMVVDLIFLNTELLLTQALDDVSRGGSPFAIVITQQHQVHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKAETREKEREEIARQAAKMADEAILQERERPPPMEEGARGGHPHPPGIQTLLNLLADNRYLTAEETDKVINYLRDRKERLLRGSTDSLQAPMSRPSLGAPSAPSLGSQSSLPSSQTHQGSQPLVSAPSVPASSANPQQELQAKILSLFNSGAAAAAVANSSSAPTVGTSGGTPSQNFTNMTSNQARSAQMSAGNLNQAQQRLQTPNTQLPSLQGPSRNAGPRPGAPPPAQSLYGQHQNRLPAPGSVPAQRPVSSGINFDNPSVQKALDTLIQSGPALSHLVSQTVAQGRAGSSTQQPMGSYQRHY", "length": 747 }, "evidence": [ { "id": "F1SC53", "url": "https://omabrowser.org/oma/group/F1SC53/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZEI6-1", "protein_name": "Nuclear receptor coactivator 5", "gene_name": "Ncoa5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNTAPSRPSPTRRDPYSFGDSRDTRRDRSPIRGSPRREPRDGRNGRDTRDRDIRDPRELRDRRDSRDIRDHRDSRSVREARDLRDFRDFRDLRDSRDFRDHRDPVYDRYREIRDSRDPLYRREGSYDRYLRVDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRRYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNDCREKEREEIARQAAKMANDAILQERDRGGPEEGGRGGHPPAIQSLINLLADNRYLTAEETDKIINYLRERKERLLRSSADSLPGPISRQPLGAASGSSLKTQPSSQPLQSGQVLPSATPTPAAPPTSQQELQAKILSLFNSGAVAANSSSASPSVATGSSQNQNFSTAANSQPQQRPQASGNQPPNIVGQAGSARNMGPRPGAPSQGLFGQPSSRLAPASNMASQRPVSSTGINFDNPSVQKALDTLIQSGPALSHLVSQTAAQVGRPQAPMGSYQRHY", "length": 578 }, "evidence": [ { "id": "F1SC53", "url": "https://omabrowser.org/oma/group/F1SC53/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3H8U6-1", "protein_name": "Nuclear receptor coactivator 5", "gene_name": "Ncoa5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNTAPSRPSPTRRDPYGFGDSRDTRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRELRDHRDSRDIRDHRDSRSIRDARDLRDFRDFRDLRDSRDFRDHRDPVYDRYRDIRDSRDPLYRREGSYDRYLRMDDYYRRKDDSYFDRYRDSFDGRGPRAKERLKREERRREELYRQYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNNCREKEREEIARQAAKMANEAILQERDRGGPEEGGRGGHPPAIQSLINLLADNRYLTAEETDRVIDYLRGRKERLLRSSAADALPGPISRQPLGAASGTSLKTQSSSQPLQSGQVLPSATPTPAAPPTSQQELQAKILSLFNSGTVSANSSSASPSVAAGSSQNQNFSTAANSQPQQRPQASGNQPPSIVGQAGSARNMGPRPGAPSQGLFGQPSSRLAPASNMASQRPVSSTGINFDNPSVQKALDTLIQSGPALSHLVSQTAAQVGRPQAPIGSYQRHY", "length": 573 }, "evidence": [ { "id": "F1SC53", "url": "https://omabrowser.org/oma/group/F1SC53/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q91W39-1", "protein_name": "Nuclear receptor coactivator 5", "gene_name": "Ncoa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTAPSRPSPTRRDPYSFGDSRDTRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDRRDSRDIRDHRDSRSVREARDLRDFRDFRDLRDSRDFRDHRDPVYDRYRDIRDSRDPLYRREGSYDRYLRVDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRRYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNDCREKEREEIARQAAKMANDAILQERDRGGPEEGGRGGHPPAIQSLINLLADNRYLTAEETDKIINYLRERKERLLRSSADSLPGPISRQPLGAASGSSLKSQPSSQPLQSGQVLPSATPTPAAPPTSQQELQAKILSLFNSGAVAANSSSASPSVATGSSQNQNFSTAANSQPQQRPQASGNQPPNIVGQAGSARNMGPRPGAPSQGLFGQPSSRLAPASTMASQRPVSSTGINFDNPSVQKALDTLIQSGPALSHLVSQTAAQVGRPQAPMGSYQRHY", "length": 579 }, "evidence": [ { "id": "F1SC53", "url": "https://omabrowser.org/oma/group/F1SC53/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HCD5-1", "protein_name": "Nuclear receptor coactivator 5", "gene_name": "NCOA5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNTAPSRPSPTRRDPYGFGDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNECREKEREEIARQAAKMADEAILQERERGGPEEGVRGGHPPAIQSLINLLADNRYLTAEETDKIINYLRERKERLMRSSTDSLPGPISRQPLGATSGASLKTQPSSQPLQSGQVLPSATPTPSAPPTSQQELQAKILSLFNSGTVTANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQASGNQPPSILGQGGSAQNMGPRPGAPSQGLFGQPSSRLAPASNMTSQRPVSSTGINFDNPSVQKALDTLIQSGPALSHLVSQTTAQMGQPQAPMGSYQRHY", "length": 579 }, "evidence": [ { "id": "F1SC53", "url": "https://omabrowser.org/oma/group/F1SC53/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SC53", "url": "https://www.uniprot.org/uniprotkb/F1SC53" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SC53", "url": "https://www.uniprot.org/uniprotkb/F1SC53" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "F1SC53", "url": "https://www.uniprot.org/uniprotkb/F1SC53" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SC53", "url": "https://www.uniprot.org/uniprotkb/F1SC53" } ], "pmid": "" }, { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "F1SC53", "url": "https://www.uniprot.org/uniprotkb/F1SC53" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SC53", "url": "https://www.uniprot.org/uniprotkb/F1SC53" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 453, "end_pos": 455, "annotation": "n_glycosylation_sequon" }, { "start_pos": 470, "end_pos": 472, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 426 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 168, "end_pos": 170 }, { "start_pos": 453, "end_pos": 455 }, { "start_pos": 470, "end_pos": 472 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S8F1-1", "uniprot_ac": "F1S8F1", "uniprot_id": "F1S8F1_PIG", "mass": { "chemical_mass": 43587.0, "monoisotopic_mass": 43587.0 }, "refseq": { "ac": "XP_005654786", "name": "guanine nucleotide-binding protein subunit alpha-15", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654786" }, "gene_names": [ { "name": "GNA15", "type": "recommended", "evidence": [ { "id": "F1S8F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8F1" } ] }, { "name": "GNA15", "type": "synonym", "evidence": [ { "id": "XP_005654786", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654786" } ] } ], "protein_names": [ { "name": "Guanine nucleotide-binding protein subunit alpha", "type": "recommended", "evidence": [ { "id": "F1S8F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8F1/entry#names_and_taxonomy" } ] }, { "name": "guanine nucleotide-binding protein subunit alpha-15", "type": "synonym", "evidence": [ { "id": "XP_005654786", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654786" } ] } ], "function": [ { "annotation": "Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.", "evidence": [ { "database": "UniProtKB", "id": "F1S8F1", "url": "https://www.uniprot.org/uniprotkb/F1S8F1#function" }, { "database": "UniProtKB", "id": "RU369122", "url": "https://www.uniprot.org/uniprotkb/RU369122#function" } ] }, { "annotation": "Member of the G-protein alpha subunit family that plays a crucial role in intracellular signaling. Functions as a molecular switch, transducing signals from G protein-coupled receptors (GPCRs) to downstream effectors. In collaboration with the adapter protein TTC1, promotes HRAS activation and ERK1/2 phosphorylation independently of phospholipase Cbeta signaling. 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"ENSSSCG00000013473", "url": "https://www.ensembl.org/id/ENSSSCG00000013473" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013473", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013473", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00066", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00066", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518537", "url": "https://www.ncbi.nlm.nih.gov/gene/100518537", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000654", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000654", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001019", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001019", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011025", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011025", "database": "InterPro", "categories": [ "Protein Classification" ] }, { 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005654786", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654786", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8D0UHU6", "url": "https://www.uniprot.org/uniprotkb/A0A8D0UHU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0UHU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0UHU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8F1", "url": "https://www.uniprot.org/uniprotkb/F1S8F1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8F1-1", "url": "https://www.uniprot.org/uniprotkb/F1S8F1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARSLTWRCCPWCLTEDEKSAVRIDQEINKILLEQKKRDRGELKLLLLGPGESGKSTFIKQMRIIHGAGYSEEDRKSFRPLVYQNIFVSMRTMIEAMDRLQIPFSWPESKHHASLVMSQDPYKVTTFEKRYAVAMQWLWRDAGIRACYERRREFHLLDSAVYYLSNLERITEDGYIPTAQDVLRSRMPTTGINEYCFSVQKTNLRIVDVGGQKSERKKWIHCFENVIALIYLASLSEYDQCLEENNQENRMKESLALFGTILELPWFKSTSVILFLNKTDILEEKIPTSHLATYFPSFQGPKQDAEAAKRFILDMYTRMYAGCVDGADGGRKGPRSRRLFSHYTCATDTQNIRKVFKDVRDSVLARYLDEINLL", "length": 374, "header": "tr|F1S8F1-1|F1S8F1_PIG Isoform 1 of Guanine nucleotide-binding protein subunit alpha OS=Sus scrofa OX=9823 GN=GNA15 PE=3 SV=2 CANONICAL=F1S8F1-1" }, "isoforms": [ { "isoform_ac": "A0A8D0UHU6-1", "url": "https://www.uniprot.org/uniprotkb/F1S8F1/entry#A0A8D0UHU6-1", "sequence": { "sequence": 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"https://www.uniprot.org/uniprotkb/F1S8F1/entry#F1S8F1-1", "sequence": { "sequence": "MARSLTWRCCPWCLTEDEKSAVRIDQEINKILLEQKKRDRGELKLLLLGPGESGKSTFIKQMRIIHGAGYSEEDRKSFRPLVYQNIFVSMRTMIEAMDRLQIPFSWPESKHHASLVMSQDPYKVTTFEKRYAVAMQWLWRDAGIRACYERRREFHLLDSAVYYLSNLERITEDGYIPTAQDVLRSRMPTTGINEYCFSVQKTNLRIVDVGGQKSERKKWIHCFENVIALIYLASLSEYDQCLEENNQENRMKESLALFGTILELPWFKSTSVILFLNKTDILEEKIPTSHLATYFPSFQGPKQDAEAAKRFILDMYTRMYAGCVDGADGGRKGPRSRRLFSHYTCATDTQNIRKVFKDVRDSVLARYLDEINLL", "length": 374, "header": "tr|F1S8F1-1|F1S8F1_PIG Isoform 1 of Guanine nucleotide-binding protein subunit alpha OS=Sus scrofa OX=9823 GN=GNA15 PE=3 SV=2 CANONICAL=F1S8F1-1" }, "locus": { "chromosome": "2", "start_pos": 75429486, "end_pos": 75409419, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014718.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014718.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014320.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014320.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0UHU6", "url": "https://www.uniprot.org/uniprotkb/A0A8D0UHU6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518537", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518537", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M2BHS4-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna15.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGCWRWCYTTCICCLSEEDKNAIVIHNEIKRILAEQKKRERREIKVLLLGTGESGKTTFIKQMRIIHGKGFSEEDRRGYIKNVYQNIFTAMRAMTGAMESLRIPYANPQNEAYGRQFKDVEIRQVTQLDRMYVEAIRRLWADPGIKACYCRRREYQLLDSTEYYMTNLDRITAPDYIPTAQDVLRVRFPTTGINDYSFSVEKITLRIVDVGGQKSERRKWIHCFENVTSLIFLASLSEYDQVLEENSKENRMKESLSLFYTTIHSPWFASASIILFLNKMDILEEKIQSSDLKAYFPEFQGKKRDKNDAKTYISSLYRKEASNRESGMHRGFYMHFTCATDTNNIRKVFMDVKETILTNELQSIGML", "length": 367 }, "evidence": [ { "id": "F1S8F1", "url": "https://omabrowser.org/oma/group/F1S8F1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3HSI9-1", "protein_name": "Guanine nucleotide-binding protein subunit 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Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SCH2", "url": "https://www.orthodb.org/?gene=F1SCH2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22803", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22803", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003123415", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123415", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8D1GWB3", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GWB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1GWB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GWB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCH2", "url": "https://www.uniprot.org/uniprotkb/F1SCH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCH2-1", "url": "https://www.uniprot.org/uniprotkb/F1SCH2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCTLYTNSGCRDLPGYREEEDDDDDYENTAPPYKDLPPKPVSMGPPRPPRAENKMENTPFPCKLPKNTGLNVTPVTCVSPPLGIDLNHPPSQTSRATTPVPYLREKSGGPMCYQEGRLMVYLCLLVVVSLLLGCTGLAVTLIKYQKMVEELRMLTSQQMAWRANVTAMAGLAVLKKDIDRVRADTNQSLLELRGLLDCTRVTCPEGWLPFQGKCYYFSPNTKSWDEARQFCQENYSHLVIISNFAEQNFVAKAHGSPRVYWLGLTDKNLEGTWRWLDGSPVTLSFWDPEEPNNLHEEDCGSMNRGGTWNDLSCDKTTYWICERKCSC", "length": 327, "header": "tr|F1SCH2-1|F1SCH2_PIG Isoform 1 of C-type lectin domain containing 17A OS=Sus scrofa OX=9823 GN=CLEC17A PE=4 SV=2 CANONICAL=F1SCH2-1" }, "isoforms": [ { "isoform_ac": "A0A8D1GWB3-1", "url": "https://www.uniprot.org/uniprotkb/F1SCH2/entry#A0A8D1GWB3-1", "sequence": { "sequence": "MCTLYTNSGCRDLPGYREEEDDDDDYENTAPPYKDLPPKPVSMGPPRPPRAGLNVTPVTCVSPPLGIDLNHPPSQTSRATTPVPYLREKSGGPMCYQEGRLMVYLCLLVVVSLLLGCTGLAVTLIKYQKMVEELRMLTSQQMAWRANVTAMAGLAVLKKDIDRVRADTNQSLLELRGLLDCTRVTCPEGWLPFQGKCYYFSPNTKSWDEARQFCQENYSHLVIISNFAEQNFVAKAHGSPRVYWLGLTDKNLEGTWRWLDGSPVTLSFWDPEEPNNLHEEDCGSMNRGGTWNDLSCDKTTYWICERKCSC", "length": 310, "header": "tr|A0A8D1GWB3-1|F1SCH2_PIG Computationally mapped isoform of C-type lectin domain containing 17A OS=Sus scrofa OX=9823 GN=CLEC17A PE=4 SV=1 CANONICAL=F1SCH2-1" }, "locus": { "chromosome": "2", "start_pos": 64706047, "end_pos": 64690232, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038942.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038942.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035619.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035619.1" } ] } }, { "isoform_ac": "F1SCH2-1", "url": "https://www.uniprot.org/uniprotkb/F1SCH2/entry#F1SCH2-1", "sequence": { "sequence": "MCTLYTNSGCRDLPGYREEEDDDDDYENTAPPYKDLPPKPVSMGPPRPPRAENKMENTPFPCKLPKNTGLNVTPVTCVSPPLGIDLNHPPSQTSRATTPVPYLREKSGGPMCYQEGRLMVYLCLLVVVSLLLGCTGLAVTLIKYQKMVEELRMLTSQQMAWRANVTAMAGLAVLKKDIDRVRADTNQSLLELRGLLDCTRVTCPEGWLPFQGKCYYFSPNTKSWDEARQFCQENYSHLVIISNFAEQNFVAKAHGSPRVYWLGLTDKNLEGTWRWLDGSPVTLSFWDPEEPNNLHEEDCGSMNRGGTWNDLSCDKTTYWICERKCSC", "length": 327, "header": "tr|F1SCH2-1|F1SCH2_PIG Isoform 1 of C-type lectin domain containing 17A OS=Sus scrofa OX=9823 GN=CLEC17A PE=4 SV=2 CANONICAL=F1SCH2-1" }, "locus": { "chromosome": "2", "start_pos": 64706047, "end_pos": 64690232, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015053.6", "url": "https://www.ensembl.org/id/ENSSSCT00000015053.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014648.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014648.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1GWB3", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GWB3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514755", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514755", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "F1SCH2", "url": "https://www.uniprot.org/uniprotkb/F1SCH2" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SCH2", "url": "https://www.uniprot.org/uniprotkb/F1SCH2" } ], "pmid": "" }, { "name": "D-mannose binding", "id": "GO:0005537", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005537", "evidence": [ { "database": "UniProtKB", "id": "F1SCH2", "url": "https://www.uniprot.org/uniprotkb/F1SCH2" } ], "pmid": "" }, { "name": "fucose binding", "id": "GO:0042806", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042806", "evidence": [ { "database": "UniProtKB", "id": "F1SCH2", "url": "https://www.uniprot.org/uniprotkb/F1SCH2" } ], "pmid": "" }, { "name": "pattern recognition receptor activity", "id": "GO:0038187", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038187", "evidence": [ { "database": "UniProtKB", "id": "F1SCH2", "url": "https://www.uniprot.org/uniprotkb/F1SCH2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "F1SCH2", "url": "https://www.uniprot.org/uniprotkb/F1SCH2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "F1SCH2", "url": "https://www.uniprot.org/uniprotkb/F1SCH2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" }, { "start_pos": 71, "end_pos": 73, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCH2" }, { "id": "PS50041", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50041" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C-type lectin", "eco_id": "ECO_0000259", "start_pos": 210, "end_pos": 322, "start_aa": "Phe", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 164, "end_pos": 166 }, { "start_pos": 186, "end_pos": 188 }, { "start_pos": 234, "end_pos": 236 }, { "start_pos": 71, "end_pos": 73 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SD58-1", "uniprot_ac": "F1SD58", "uniprot_id": "F1SD58_PIG", "mass": { "chemical_mass": 91230.0, "monoisotopic_mass": 91230.0 }, "refseq": {}, "gene_names": [ { "name": "PALM3", "type": "recommended", "evidence": [ { "id": "F1SD58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD58" } ] } ], "protein_names": [ { "name": "Paralemmin 3", "type": "synonym", "evidence": [ { "id": "F1SD58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD58/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SD58", "url": "https://www.uniprot.org/uniprotkb/F1SD58" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PALM3", "url": "https://www.uniprot.org/uniprotkb/F1SD58", "locus": { "chromosome": "2", "start_pos": 65126887, "end_pos": 65117290, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013767", "url": "https://www.ensembl.org/id/ENSSSCG00000013767" } ] } } ], "crossref": [ { "id": "F1SD58", "url": "https://alphafold.ebi.ac.uk/entry/F1SD58", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013767", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013767", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47528", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47528", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47528:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47528:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03285", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03285", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4F6C5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6C5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6C5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6C5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FF62", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FF62-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF62-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FL67", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FL67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FL67-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FL67-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SD58", "url": "https://www.uniprot.org/uniprotkb/F1SD58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SD58-1", "url": "https://www.uniprot.org/uniprotkb/F1SD58-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTIQVSTHFTDEETEAQRGDVRPRKGFSSTCHDLCSLFSQPQLLLGAKGKYRKTLGFCWFRAAQGSWLRAGYSRGAPAERWTSGRPLSQPLPSLYRLMAESFLYRQRLEVIAEKRRLQEEIRAARRELEEEKLRVERLKRKSLRERWLMDGSAEEPERPQDPTSQDPQSPEGQAQARIRNLEDSLFTLQSQLQLLQSASTGAQHKPSGRPTWRRQEEPESHSVALSLLSTSPLTPPGQTDLNKRASLPAGPVGTDPESPSEPRDEAVWVPPAPRRVPGAAGVSLETNGPCPGSSPPLEQMLSQGVAALEEGVNGAKGEDTVKVEWEGLRATEDCAMGTTGLELEAKVEEMVLEAIGDRQEAGHPEIPSWVKEDRGIVEVLWEGVGGTEGSDLEVTGEAGQGLEAVQTSSLQLQEGPVGAMSEGGEGAPRGSPDGDGQGGLRGEEGSFIWVEKVTLSEEWEELVVEGLEGPKALGREGDESPLGAEGRGGEETWEVEMRQAEESVGEGKKGSEGKVGAEPREAEMSLAMERKGSEESLEPERRGSEEKVETERGGEEEPLSAERKRVEGPPRAERERGEEPLRAEQKGGKEELEAIKEPLVTERKGEESLKVKRMGGEEPLEAEAKGDEESLKAERTRDEEPLDAETKRDEESLKVERMGDEEPLEAEAKGDEESLKVGRTGDEEPLQTEKTQGVEEDLSPEEQRESGGKKECQAEEVSKTGSPLGAKEEARPEEERQQPQEKQEGSLKEETVKPQTPAEGQDPPGDATPFLAETSAPEQPAECQPLLQVERPRANPSARPVPTYAPARQPEPSSPPEGEGASGPKQKTCQCCAIM", "length": 835, "header": "tr|F1SD58-1|F1SD58_PIG Isoform 1 of Paralemmin 3 OS=Sus scrofa OX=9823 GN=PALM3 PE=4 SV=2 CANONICAL=F1SD58-1" }, "isoforms": [ { "isoform_ac": "A0A8W4F6C5-1", "url": "https://www.uniprot.org/uniprotkb/F1SD58/entry#A0A8W4F6C5-1", "sequence": { "sequence": "MTIQVSTHFTDEETEAQRGDVRPRKGFSSTCHDLCSLFSQPQLLLGAKGKYRKTLGFCWFRAAQGSWLRAGYSRGAPAERWTSGRPLSQPLPSLYRLMAESFLYRQRLEVIAEKRRLQEEIRAARRELEEEKLRVERLKRKSLRERWLMDGSAEEPERPQDPTSQDPQSPEGQAQARIRNLEDSLFTLQSQLQLLQSASTGAQHKPSGRPTWRRQGHRPLSQPTVEAGPAGQTDLNKRASLPAGPVGTDPESPSEPRDEAVWVPPAPRRVPGAAGVSLETNGPCPGSSPPLEQMLSQGVAALEEGVNGAKGEDTVKVEWEGLRATEDCAMGTTGLELEAKVEEMVLEAIGDRQEAGHPEIPSWVKEDRGIVEVLWEGVGGTEGSDLEVTGEAGQGLEAVQTSSLQLQEGPVGAMSEGGEGAPRGSPDGDGQGGLRGEEGSFIWVEKVTLSEEWEELVVEGLEGPKALGREGDESPLGAEGRGGEETWEVEMRQAEESVGEGKKGSEGKVGAEPREAEMSLAMERKGSEESLEPERRGSEEKVETERGGEEEPLSAERKRVEGPPRAERERGDEESLKAERTRDEEPLDAETKRDEESLKVERMGDEEPLEAEAKGDEESLKVGRTGDEEPLQTEKTQGVEEDLSPEEQRESGGKKECQAEEVSKTGSPLGAKEEARPEEERQQPQEKQEGSLKEETVKPQTPAEGQDPPGDATPFLAETSAPEQPAECQPLLQVERPRANPSARPVPTYAPARQPEPSSPPEGEGASGPKQKTCQCCAIM", "length": 780, "header": "tr|A0A8W4F6C5-1|F1SD58_PIG Computationally mapped isoform of Paralemmin 3 OS=Sus scrofa OX=9823 GN=PALM3 PE=4 SV=1 CANONICAL=F1SD58-1" }, "locus": { "chromosome": "2", "start_pos": 65126884, "end_pos": 65120151, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097725.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097725.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074667.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074667.1" } ] } }, { "isoform_ac": "A0A8W4FF62-1", "url": "https://www.uniprot.org/uniprotkb/F1SD58/entry#A0A8W4FF62-1", "sequence": { "sequence": "GRRGHLPCAPSRAQRKSLRERWLMDGSAEEPERPQDPTSQDPQSPEGQAQARIRNLEDSLFTLQSQLQLLQSASTGAQHKPSGRPTWRRQGHRPLSQPTVEAGPAGQTDLNKRASLPAGPVGTDPESPSEPRDEAVWVPPAPRRVPGAAGVSLETNGPCPGSSPPLEQMLSQGVAALEEGVNGAKGEDTVKVEWEGLRATEDCAMGTTGLELEAKVEEMVLEAIGDRQEAGHPEIPSWVKEDRGIVEVLWEGVGGTEGSDLEVTGEAGQGLEAVQTSSLQLQEGPVGAMSEGGEGAPRGSPDGDGQGGLRGEEGSFIWVEKVTLSEEWEELVVEGLEGPKALGREGDESPLGAEGRGGEETWEVEMRQAEESVGEGKKGSEGKVGAEPREAEMSLAMERKGSEESLEPERRGSEEKVETERGGEEEPLSAERKRVEGPPRAERERGDEESLKAERTRDEEPLDAETKRDEESLKVERMGDEEPLEAEAKGDEESLKVGRTGDEEPLQTEKTQGVEEDLSPEEQRESGGKKECQAEEVSKTGSPLGAKEEARPEEERQQPQEKQEGSLKEETVKPQTPAEGQDPPGDATPFLAETSAPEQPAECQPLLQVERPRANPSARPVPTYAPARQPEPSSPPEGEGASGPKQKTCQCCAIM", "length": 655, "header": "tr|A0A8W4FF62-1|F1SD58_PIG Computationally mapped isoform of Paralemmin 3 OS=Sus scrofa OX=9823 GN=PALM3 PE=4 SV=1 CANONICAL=F1SD58-1" }, "locus": { "chromosome": "2", "start_pos": 65126884, "end_pos": 65121471, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100993.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100993.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077952.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077952.1" } ] } }, { "isoform_ac": "A0A8W4FL67-1", "url": "https://www.uniprot.org/uniprotkb/F1SD58/entry#A0A8W4FL67-1", "sequence": { "sequence": "MALQSQAWSPVTPMLMAESFLYRQRLEVIAEKRRLQEEIRAARRELEEEKLRVERLKRKSLRERWLMDGSAEEPERPQDPTSQDPQSPEGQAQARIRNLEDSLFTLQSQLQLLQSASTGAQHKPSGRPTWRRQGHRPLSQPTVEAGPAGQTDLNKRASLPAGPVGTDPESPSEPRDEAVWVPPAPRRVPGAAGVSLETNGPCPGSSPPLEQMLSQGVAALEEGVNGAKGEDTVKVEWEGLRATEDCAMGTTGLELEAKVEEMVLEAIGDRQEAGHPEIPSWVKEDRGIVEVLWEGVGGTEGSDLEVTGEAGQGLEAVQTSSLQLQEGPVGAMSEGGEGAPRGSPDGDGQGGLRGEEGSFIWVEKVTLSEEWEELVVEGLEGPKALGREGDESPLGAEGRGGEETWEVEMRQAEESVGEGKKGSEGKVGAEPREAEMSLAMERKGSEESLEPERRGSEEKVETERGGEEEPLSAERKRVEGPPRAERERGDEESLKAERTRDEEPLDAETKRDEESLKVERMGDEEPLEAEAKGDEESLKVGRTGDEEPLQTEKTQGVEEDLSPEEQRESGGKKECQAEEVSKTGSPLGAKEEARPEEERQQPQEKQEGSLKEETVKPQTPAEGQDPPGDATPFLAETSAPEQPAECQPLLQVERPRANPSARPVPTYAPARQPEPSSPPEGEGASGPKQKTCQCCAIM", "length": 698, "header": "tr|A0A8W4FL67-1|F1SD58_PIG Computationally mapped isoform of Paralemmin 3 OS=Sus scrofa OX=9823 GN=PALM3 PE=4 SV=1 CANONICAL=F1SD58-1" }, "locus": { "chromosome": "2", "start_pos": 65126884, "end_pos": 65117373, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093628.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093628.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079952.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079952.1" } ] } }, { "isoform_ac": "F1SD58-1", "url": "https://www.uniprot.org/uniprotkb/F1SD58/entry#F1SD58-1", "sequence": { "sequence": "MTIQVSTHFTDEETEAQRGDVRPRKGFSSTCHDLCSLFSQPQLLLGAKGKYRKTLGFCWFRAAQGSWLRAGYSRGAPAERWTSGRPLSQPLPSLYRLMAESFLYRQRLEVIAEKRRLQEEIRAARRELEEEKLRVERLKRKSLRERWLMDGSAEEPERPQDPTSQDPQSPEGQAQARIRNLEDSLFTLQSQLQLLQSASTGAQHKPSGRPTWRRQEEPESHSVALSLLSTSPLTPPGQTDLNKRASLPAGPVGTDPESPSEPRDEAVWVPPAPRRVPGAAGVSLETNGPCPGSSPPLEQMLSQGVAALEEGVNGAKGEDTVKVEWEGLRATEDCAMGTTGLELEAKVEEMVLEAIGDRQEAGHPEIPSWVKEDRGIVEVLWEGVGGTEGSDLEVTGEAGQGLEAVQTSSLQLQEGPVGAMSEGGEGAPRGSPDGDGQGGLRGEEGSFIWVEKVTLSEEWEELVVEGLEGPKALGREGDESPLGAEGRGGEETWEVEMRQAEESVGEGKKGSEGKVGAEPREAEMSLAMERKGSEESLEPERRGSEEKVETERGGEEEPLSAERKRVEGPPRAERERGEEPLRAEQKGGKEELEAIKEPLVTERKGEESLKVKRMGGEEPLEAEAKGDEESLKAERTRDEEPLDAETKRDEESLKVERMGDEEPLEAEAKGDEESLKVGRTGDEEPLQTEKTQGVEEDLSPEEQRESGGKKECQAEEVSKTGSPLGAKEEARPEEERQQPQEKQEGSLKEETVKPQTPAEGQDPPGDATPFLAETSAPEQPAECQPLLQVERPRANPSARPVPTYAPARQPEPSSPPEGEGASGPKQKTCQCCAIM", "length": 835, "header": "tr|F1SD58-1|F1SD58_PIG Isoform 1 of Paralemmin 3 OS=Sus scrofa OX=9823 GN=PALM3 PE=4 SV=2 CANONICAL=F1SD58-1" }, "locus": { "chromosome": "2", "start_pos": 65126884, "end_pos": 65120151, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015041.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015041.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014636.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014636.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 387, "start_aa": "Thr", "end_pos": 387, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr387", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F6C5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6C5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SD58", "url": "https://www.uniprot.org/uniprotkb/F1SD58" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "regulation of cell shape", "id": "GO:0008360", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008360", "evidence": [ { "database": "UniProtKB", "id": "F1SD58", "url": "https://www.uniprot.org/uniprotkb/F1SD58" } ], "pmid": "" }, { "name": "negative regulation of cytokine-mediated signaling pathway", "id": "GO:0001960", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001960", "evidence": [ { "database": "UniProtKB", "id": "F1SD58", "url": "https://www.uniprot.org/uniprotkb/F1SD58" } ], "pmid": "" }, { "name": "response to lipopolysaccharide", "id": "GO:0032496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032496", "evidence": [ { "database": "UniProtKB", "id": "F1SD58", "url": "https://www.uniprot.org/uniprotkb/F1SD58" } ], "pmid": "" }, { "name": "Toll signaling pathway", "id": "GO:0008063", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008063", "evidence": [ { "database": "UniProtKB", "id": "F1SD58", "url": "https://www.uniprot.org/uniprotkb/F1SD58" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SD58-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 835, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SD58-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SD58" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 387 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SBU6-1", "uniprot_ac": "F1SBU6", "uniprot_id": "F1SBU6_PIG", "mass": { "chemical_mass": 89623.0, "monoisotopic_mass": 89623.0 }, "refseq": {}, "gene_names": [ { "name": "CATSPERD", "type": "recommended", "evidence": [ { "id": "F1SBU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBU6" } ] } ], "protein_names": [ { "name": "Cation channel sperm-associated auxiliary subunit delta", "type": "recommended", "evidence": [ { "id": "F1SBU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBU6/entry#names_and_taxonomy" } ] }, { "name": "Transmembrane protein 146", "type": "synonym", "evidence": [ { "id": "F1SBU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBU6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Auxiliary component of the CatSper complex, a complex involved in sperm cell hyperactivation. Sperm cell hyperactivation is needed for sperm motility which is essential late in the preparation of sperm for fertilization. Required for CATSPER1 stability before intraflagellar transport and/or incorporation of the CatSper complex channel into the flagellar membrane.", "evidence": [ { "database": "UniProtKB", "id": "F1SBU6", "url": "https://www.uniprot.org/uniprotkb/F1SBU6#function" }, { "database": "UniProtKB", "id": "ARBA00046028", "url": "https://www.uniprot.org/uniprotkb/ARBA00046028#function" }, { "database": "UniProtKB", "id": "A0A8W4F994", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F994#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBU6", "url": "https://www.uniprot.org/uniprotkb/F1SBU6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CATSPERD", "url": "https://www.uniprot.org/uniprotkb/F1SBU6", "locus": { "chromosome": "2", "start_pos": 73207273, "end_pos": 73265866, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013527", "url": "https://www.ensembl.org/id/ENSSSCG00000013527" } ] } } ], "crossref": [ { "id": "F1SBU6", "url": "https://alphafold.ebi.ac.uk/entry/F1SBU6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013527", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013527", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR028751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053813", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053813", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053814", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053814", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR33722", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33722", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33722:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33722:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15020", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15020", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22850", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22850", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23747", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23747", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1300642", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1300642", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4F994", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F994", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F994-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F994-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBU6", "url": "https://www.uniprot.org/uniprotkb/F1SBU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBU6-1", "url": "https://www.uniprot.org/uniprotkb/F1SBU6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLVLMLVTVTILRLCLLSRAQPLCRSRMVRTGKVFHDGQKIQGDQLYFSFGTTRLIKHPCKKNIALYLGRQIFLTRDNFESSLLPCSIPTSMQVGIPEVTSAHFAGSVLLLVVNRKVYVYDYEANSWNASTGIEHPVSHISGDNCCYSENSFCMDISNSVFAYLHGAQISQTNIYFSNTRGYRFQKFAHERQAELVGSLGGVFYFHSLSQVGLLLIDQRKAMFSYSDHPLNRSFGLPFDYNGTLDILIAPGQKGILIFWFEKSLLVSRNAGQLVDPVRVREGQHILYPSIFDANITIHSIAANENELAVLTRESNLYYGSLGILSSSLIKFADQDIWSEEAVLVFTDVGLLEILTPLPDSTFPAFDFQKCPMNIQEILMDPQLHIDVCKVKLLQGEFANKMYTIDMNSKLELTALMIPRPGTSPVPLVMVSNPHSLGLQAVIYEDGYTYDGNTKHRLNISLRQQHHWGRADPNFTSSIKRSTISTITLDIANKEISCVDLKPLGGTHDFLVPHGSGSFSPIFVAHSEISACYNGILDPVALQDNYSYVIEREAYDPNFRGQEASEDLKVHYQYEKLGCPLLAYYDTPWKPVVELWREGTFQEVVEAEYVLLEVNGLFTYTYSLTADTALCNSQPQNWTSIAEMAGDQGLFAWDRETYVSCHDPDNEAPLTWPKVPYQILGGPTDNKVIFDQRNGIYIFFISIVDPYYSYCHLEATFSVYVYGAFPLSIIPAELTIVLLTVATLLSVWLAYMIPKQLHTEQGLRLKDFWVHLYRRCRKFCACFQGRWRGGAETS", "length": 793, "header": "tr|F1SBU6-1|F1SBU6_PIG Isoform 1 of Cation channel sperm-associated auxiliary subunit delta OS=Sus scrofa OX=9823 GN=CATSPERD PE=3 SV=4 CANONICAL=F1SBU6-1" }, "isoforms": [ { "isoform_ac": "A0A8W4F994-1", "url": "https://www.uniprot.org/uniprotkb/F1SBU6/entry#A0A8W4F994-1", "sequence": { "sequence": "GIRYKPQDQLYFSFGTTRLIKHPCKKNIALYLGRQIFLTRDNFESSLLPCSIPTSMQVGIPEVTSAHFAGSVLLLVVNRKVYVYDYEANSWNASTGIEHPVSHISGDNCCYSENSFCMDISNSVFAYLHGAQISQTNIYFSNTRGYRFQKFAHERQAELVGSLGGVFYFHSLSQVGLLLIDQRKAMFSYSDHPLNRSFGLPFDYNGTLDILIAPGQKGILIFWFEKSLLVSRNAGQLVDPVRVREGQHILYPSIFDANITIHSIAANENELAVLTRESNLYYGSLGILSSSLIKFADQDIWSEEAVLVFTDVGLLEILTPLPDSTFPAFDFQKCPMNIQEILMDPQLHIDVCKVKLLQGEFANKMYTIDMNSKLELTALMIPRPGTSPVPLVMVSNPHSLGLQAVIYEDGYTYDGNTKHRLNISLRQQHHWGRADPNFTSSIKRSTISTITLDIANKEISCVDLKPLGGTHDFLVPHGSGSFSPIFVAHSEISACYNGILDPVALQDNYSYVIEREAYDPNFRGQEASEDLKVHYQYEKLGCPLLAYYDTPWKPVVELWREGTFQEVVEAEYVLLEVNGLFTYTYSLTADTALCNSQPQNWTSIAEMAGDQGLFAWDRETYVSCHDPDNEAPLTWPKVPYQILGGPTDNKVIFDQRNGIYIFFISIVDPYYSYCHLEATFSVYVYGAFPLSIIPAELTIVLLTVATLLSVWLAYMIPKQLHTEQGLRLKDFWVHLYRRCRKFCACFQGRC", "length": 750, "header": "tr|A0A8W4F994-1|F1SBU6_PIG Computationally mapped isoform of Cation channel sperm-associated auxiliary subunit delta OS=Sus scrofa OX=9823 GN=CATSPERD PE=3 SV=1 CANONICAL=F1SBU6-1" }, "locus": { "chromosome": "2", "start_pos": 73262103, "end_pos": 73207922, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106334.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106334.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075896.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075896.1" } ] } }, { "isoform_ac": "F1SBU6-1", "url": "https://www.uniprot.org/uniprotkb/F1SBU6/entry#F1SBU6-1", "sequence": { "sequence": "MLVLMLVTVTILRLCLLSRAQPLCRSRMVRTGKVFHDGQKIQGDQLYFSFGTTRLIKHPCKKNIALYLGRQIFLTRDNFESSLLPCSIPTSMQVGIPEVTSAHFAGSVLLLVVNRKVYVYDYEANSWNASTGIEHPVSHISGDNCCYSENSFCMDISNSVFAYLHGAQISQTNIYFSNTRGYRFQKFAHERQAELVGSLGGVFYFHSLSQVGLLLIDQRKAMFSYSDHPLNRSFGLPFDYNGTLDILIAPGQKGILIFWFEKSLLVSRNAGQLVDPVRVREGQHILYPSIFDANITIHSIAANENELAVLTRESNLYYGSLGILSSSLIKFADQDIWSEEAVLVFTDVGLLEILTPLPDSTFPAFDFQKCPMNIQEILMDPQLHIDVCKVKLLQGEFANKMYTIDMNSKLELTALMIPRPGTSPVPLVMVSNPHSLGLQAVIYEDGYTYDGNTKHRLNISLRQQHHWGRADPNFTSSIKRSTISTITLDIANKEISCVDLKPLGGTHDFLVPHGSGSFSPIFVAHSEISACYNGILDPVALQDNYSYVIEREAYDPNFRGQEASEDLKVHYQYEKLGCPLLAYYDTPWKPVVELWREGTFQEVVEAEYVLLEVNGLFTYTYSLTADTALCNSQPQNWTSIAEMAGDQGLFAWDRETYVSCHDPDNEAPLTWPKVPYQILGGPTDNKVIFDQRNGIYIFFISIVDPYYSYCHLEATFSVYVYGAFPLSIIPAELTIVLLTVATLLSVWLAYMIPKQLHTEQGLRLKDFWVHLYRRCRKFCACFQGRWRGGAETS", "length": 793, "header": "tr|F1SBU6-1|F1SBU6_PIG Isoform 1 of Cation channel sperm-associated auxiliary subunit delta OS=Sus scrofa OX=9823 GN=CATSPERD PE=3 SV=4 CANONICAL=F1SBU6-1" }, "locus": { "chromosome": "2", "start_pos": 73265667, "end_pos": 73207871, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014774.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014774.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014374.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014374.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F994", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F994" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1300642", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1300642", "resource": "Reactome", "description": "Sperm Motility And Taxes" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "CatSper complex", "id": "GO:0036128", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036128", "evidence": [ { "database": "UniProtKB", "id": "F1SBU6", "url": "https://www.uniprot.org/uniprotkb/F1SBU6" } ], "pmid": "" }, { "name": "sperm principal piece", "id": "GO:0097228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097228", "evidence": [ { "database": "UniProtKB", "id": "F1SBU6", "url": "https://www.uniprot.org/uniprotkb/F1SBU6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "F1SBU6", "url": "https://www.uniprot.org/uniprotkb/F1SBU6" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SBU6", "url": "https://www.uniprot.org/uniprotkb/F1SBU6" } ], "pmid": "" }, { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "F1SBU6", "url": "https://www.uniprot.org/uniprotkb/F1SBU6" } ], "pmid": "" }, { "name": "sperm capacitation", "id": "GO:0048240", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048240", "evidence": [ { "database": "UniProtKB", "id": "F1SBU6", "url": "https://www.uniprot.org/uniprotkb/F1SBU6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 458, "end_pos": 460, "annotation": "n_glycosylation_sequon" }, { "start_pos": 473, "end_pos": 475, "annotation": "n_glycosylation_sequon" }, { "start_pos": 544, "end_pos": 546, "annotation": "n_glycosylation_sequon" }, { "start_pos": 636, "end_pos": 638, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBU6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 793, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBU6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBU6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBU6" }, { "id": "PF23747", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23747" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERD Ig-like", "eco_id": "ECO_0000259", "start_pos": 390, "end_pos": 503, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SBU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBU6" }, { "id": "PF15020", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15020" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERD beta-propeller", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 370, "start_aa": "Gly", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SBU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBU6" }, { "id": "PF22850", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERD/E C-terminal", "eco_id": "ECO_0000259", "start_pos": 544, "end_pos": 760, "start_aa": "Asn", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 128, "end_pos": 130 }, { "start_pos": 231, "end_pos": 233 }, { "start_pos": 241, "end_pos": 243 }, { "start_pos": 294, "end_pos": 296 }, { "start_pos": 458, "end_pos": 460 }, { "start_pos": 473, "end_pos": 475 }, { "start_pos": 544, "end_pos": 546 }, { "start_pos": 636, "end_pos": 638 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SDM2-1", "uniprot_ac": "F1SDM2", "uniprot_id": "F1SDM2_PIG", "mass": { "chemical_mass": 86995.0, "monoisotopic_mass": 86995.0 }, "refseq": {}, "gene_names": [ { "name": "C10orf90", "type": "recommended", "evidence": [ { "id": "F1SDM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDM2" } ] }, { "name": "C14H10orf90", "type": "recommended", "evidence": [ { "id": "F1SDM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDM2" } ] }, { "name": "C10orf90", "type": "synonym", "evidence": [ { "id": "F1SDM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDM2" } ] } ], "protein_names": [ { "name": "Chromosome 14 C10orf90 homolog", "type": "synonym", "evidence": [ { "id": "F1SDM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDM2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDM2", "url": "https://www.uniprot.org/uniprotkb/F1SDM2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C14H10orf90", "url": "https://www.uniprot.org/uniprotkb/F1SDM2", "locus": {} } ], "crossref": [ { "id": "F1SDM2", "url": "https://alphafold.ebi.ac.uk/entry/F1SDM2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010747", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010747", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21553", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21553", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21553:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21553:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15309", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15309", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17730", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17730", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FGT0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGT0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDM2", "url": "https://www.uniprot.org/uniprotkb/F1SDM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SDM2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQQPGIPAKPHQKGSAARQAEAAVHRTFQIRTFSTELKNHVMVMDFVKRNWFPSQRRAKACIIHMYQGLKTAEQTASRYEIHSRLFSCPKDHSAWERNESLSKAGLRDHQSSTCDQIALRNLQDVTEKKSDVTKGALASQNTKMISSVVISHLIDENKSKENGAALPVPCAYSTKPSFANRSGVTINRAFEILPGGLGMQTSAGQQGPVTQQPPQEEKPCGGSQKGFASITITARRVGPPASTLVWEAVGDPLWIRCRAQDALFRDPSMLASGTHPCPHQAPFGCTEFSRNCSVMGLKVPEAHAGLCEGQDCWMTNEGNGGDSFSPGTPRSRVEKSPLVFSSCVHLRVSQPCPNSIYYLDRSLSVPIEPPRLAGPKTHRSVLSLNLNCSSHRRTPDGAGGTVNREPISAALTPKPTEGKQLLLGPCWNLGLQESFLEENPSLGRVPVGTGACPWRGSSPLENTAFAASGTNQIPGRKEKEDPTAHCHTDSHGPANQLSIHIPGWSYAAVEAKAFSGSSEKQQGGARVTVSAPPVEQKPAKDLLADGSSAPSSRCQSSGLSEPAESHQRGFLQPRIPLAGFLCPFQDLCTAPQKDPGVQIEREFPAGDYTCCDLVVKIKECEETEDPTTQEPTAPEPAPPGRPETCHLSEECSEYQQMPTSSLTLQEALEVRKPQFISRSQERLKKLEHMVQQRKAQQKESLGQKQSLLPVRANKKQFTVPHPLSDNLFKPKERCISEKEMHMRSKRIYNNLPEVRKKKEEQKKRVILQSNRLRAEVFKKQLLDQLLQRNAV", "length": 791, "header": "tr|F1SDM2-1|F1SDM2_PIG Isoform 1 of Chromosome 14 C10orf90 homolog OS=Sus scrofa OX=9823 GN=C14H10orf90 PE=4 SV=4 CANONICAL=F1SDM2-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FGT0-1", "url": "https://www.uniprot.org/uniprotkb/F1SDM2/entry#A0A8W4FGT0-1", "sequence": { "sequence": "MSLKHPWNMTRLSEEGLRDHQSSTCDQIALRNLQDVTEKKSDVTKGALASQNTKMISSVVISHLIDENKSKENGAALPVPCAYSTKPSFANRSGVTINRAFEILPGGLGMQTSAGQQGPVTQQPPQEEKPCGGSQKGFASITITARRVGPPASTLVWEAVGDPLWIRCRAQDALFRDPSMLASGTHPCPHQAPFGCTEFSRNCSVMGLKVPEAHAGLCEGQDCWMTNEGNGGDSFSPGTPRSRVEKSPLVFSSCVHLRVSQPCPNSIYYLDRSLSVPIEPPRLAGPKTHRSVLSLNLNCSSHRRTPDGAGGTVNREPISAALTPKPTEGKQLLLGPCWNLGLQESFLEENPSLGRVPVGTGACPWRGSSPLENTAFAASGTNQIPGRKEKEDPTAHCHTDSHGPANQLSIHIPGWSYAAVEAKAFSGSSEKQQGGARVTVSAPPVEQKPAKDLLADGSSAPSSRCQSSGLSEPAESHQRGFLQPRIPLAGFLCPFQDLCTAPQKDPGVQIEREFPAGDYTCCDLVVKIKECEETEDPTTQEPTAPEPAPPGRPETCHLSEECSEYQQMPTSSLTLQEALEVRKPQFISRSQERLKKLEHMVQQRKAQQKESLGQKQSLLPVRANKKQFTVPHPLSDNLFKPKERCISEKEMHMRSKRIYNNLPEVRKKKEEQKKRVILQSNRLRAEVFKKQLLDQLLQRNAV", "length": 702, "header": "tr|A0A8W4FGT0-1|F1SDM2_PIG Computationally mapped isoform of Chromosome 14 C10orf90 homolog OS=Sus scrofa OX=9823 GN=C14H10orf90 PE=4 SV=1 CANONICAL=F1SDM2-1" }, "locus": { "chromosome": "14", "start_pos": 135811523, "end_pos": 135719520, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106170.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106170.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078440.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078440.1" } ] } }, { "isoform_ac": "F1SDM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SDM2/entry#F1SDM2-1", "sequence": { "sequence": "MQQPGIPAKPHQKGSAARQAEAAVHRTFQIRTFSTELKNHVMVMDFVKRNWFPSQRRAKACIIHMYQGLKTAEQTASRYEIHSRLFSCPKDHSAWERNESLSKAGLRDHQSSTCDQIALRNLQDVTEKKSDVTKGALASQNTKMISSVVISHLIDENKSKENGAALPVPCAYSTKPSFANRSGVTINRAFEILPGGLGMQTSAGQQGPVTQQPPQEEKPCGGSQKGFASITITARRVGPPASTLVWEAVGDPLWIRCRAQDALFRDPSMLASGTHPCPHQAPFGCTEFSRNCSVMGLKVPEAHAGLCEGQDCWMTNEGNGGDSFSPGTPRSRVEKSPLVFSSCVHLRVSQPCPNSIYYLDRSLSVPIEPPRLAGPKTHRSVLSLNLNCSSHRRTPDGAGGTVNREPISAALTPKPTEGKQLLLGPCWNLGLQESFLEENPSLGRVPVGTGACPWRGSSPLENTAFAASGTNQIPGRKEKEDPTAHCHTDSHGPANQLSIHIPGWSYAAVEAKAFSGSSEKQQGGARVTVSAPPVEQKPAKDLLADGSSAPSSRCQSSGLSEPAESHQRGFLQPRIPLAGFLCPFQDLCTAPQKDPGVQIEREFPAGDYTCCDLVVKIKECEETEDPTTQEPTAPEPAPPGRPETCHLSEECSEYQQMPTSSLTLQEALEVRKPQFISRSQERLKKLEHMVQQRKAQQKESLGQKQSLLPVRANKKQFTVPHPLSDNLFKPKERCISEKEMHMRSKRIYNNLPEVRKKKEEQKKRVILQSNRLRAEVFKKQLLDQLLQRNAV", "length": 791, "header": "tr|F1SDM2-1|F1SDM2_PIG Isoform 1 of Chromosome 14 C10orf90 homolog OS=Sus scrofa OX=9823 GN=C14H10orf90 PE=4 SV=4 CANONICAL=F1SDM2-1" }, "locus": { "chromosome": "14", "start_pos": 135953339, "end_pos": 135719520, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011759.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011759.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011457.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011457.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FGT0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGT0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1SDM2", "url": "https://www.uniprot.org/uniprotkb/F1SDM2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SDM2", "url": "https://www.uniprot.org/uniprotkb/F1SDM2" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "F1SDM2", "url": "https://www.uniprot.org/uniprotkb/F1SDM2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1SDM2", "url": "https://www.uniprot.org/uniprotkb/F1SDM2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of centriole replication", "id": "GO:0046599", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046599", "evidence": [ { "database": "UniProtKB", "id": "F1SDM2", "url": "https://www.uniprot.org/uniprotkb/F1SDM2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 157, "end_pos": 159, "annotation": "n_glycosylation_sequon" }, { "start_pos": 180, "end_pos": 182, "annotation": "n_glycosylation_sequon" }, { "start_pos": 291, "end_pos": 293, "annotation": "n_glycosylation_sequon" }, { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 98, "end_pos": 100, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDM2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 791, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDM2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDM2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDM2" }, { "id": "PF15309", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15309" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ALMS motif", "eco_id": "ECO_0000259", "start_pos": 661, "end_pos": 789, "start_aa": "Ser", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SDM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDM2" }, { "id": "PF17730", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17730" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Centrosomal protein C10orf90 N-terminal", "eco_id": "ECO_0000259", "start_pos": 148, "end_pos": 655, "start_aa": "Val", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 157, "end_pos": 159 }, { "start_pos": 180, "end_pos": 182 }, { "start_pos": 291, "end_pos": 293 }, { "start_pos": 387, "end_pos": 389 }, { "start_pos": 98, "end_pos": 100 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SAK2-1", "uniprot_ac": "F1SAK2", "uniprot_id": "F1SAK2_PIG", "mass": { "chemical_mass": 241630.0, "monoisotopic_mass": 241630.0 }, "refseq": {}, "gene_names": [ { "name": "ASXL3", "type": "recommended", "evidence": [ { "id": "F1SAK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAK2" } ] } ], "protein_names": [ { "name": "ASXL transcriptional regulator 3", "type": "synonym", "evidence": [ { "id": "F1SAK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAK2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAK2", "url": "https://www.uniprot.org/uniprotkb/F1SAK2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ASXL3", "url": "https://www.uniprot.org/uniprotkb/F1SAK2", "locus": { "chromosome": "6", "start_pos": 117518026, "end_pos": 117334259, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003736", "url": "https://www.ensembl.org/id/ENSSSCG00000003736" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003736", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003736", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007759", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007759", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024811", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024811", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026905", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026905", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13578", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13578", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13578:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13578:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05066", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05066", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13919", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13919", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13922", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13922", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FHU2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAK2", "url": "https://www.uniprot.org/uniprotkb/F1SAK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAK2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAK2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKDKRKKKDRTWAEAARLALEKHPNSPMTAKQILEVIQKEGLKETSGTSPLACLNAMLHTNTRIGDGTFFKIPGKSGLYALKKEESSCPADGTLDLGCESELDGTEMAEASASGEGNCAKQVTDEASSTREASLTNTAVQSKLVSSFQQHTKKALKQALRQQQKRRNGVSMMVNKTVPRVVLTPLKVSDEQSDSPSGSESKNGEADSSDKEMKHGQKSPTGKQTSQHLKRLKKSGLGHLKWTKAEDIDIETPGSILVNTNLRALINKHTFASLPQHFQQYLLLLLPEVDRQMGSDGILRLSTSALNNEFFAYAAQGWKQRLAEGEFTPEMQLRIRQEIEKEKKTEPWKEKFFERFYGEKLGMSREESIKLTSGPNKDGAESSSSCGTSGLPSLSIQTPSQEQQPKSMKSPTSPESDFCATLCPMVDVGKDVMTESESEDILIPEESVIQEEIEEEVETSICECQEENHKVVPEFSEESESPAHSHEEPQMAPPEDNLESCVIMNDVLETLPHIEVKVEEKSESSQEEMSVVIDQLEVCDPLVPSTSSVTRVSDTEHVEPETAVETNTPEIKAGSSSLEGQFPSEGIAVDMELQSDPDEQLSENACISETSFSSESPEGACTSLTSPGGETQSTSEESCTPASLETTFCSEVSSTENADKYNQRNPTDENLHASLMSEVSPVSTSPEISEASLMSNLPLTSEASPVSNLPLTSETSPMSDLPLTSETSSVSSMLLTSETPFISSLPLPSDTSPISSSSMNDRMVHQQRKSTSIPEEPLSPPKDEGSAPAKPLGESLISQQNSLSNTPEPIKMGTSSTAPDAFSSEALHNKTLNPQPCKSHVETETPYPASIPELPSTEMIIVKNHNVLQRTEKKGMPSPLELPVFSEETESKGNELPLAKLQDKQYVSVVDKASFSEGSRNKMHKQGSSQNRLETSHTSKLSEPSKSPDGVRNESRESEISKRKTAEHHSFGICKEKRARIEDDQSNRGISSSSPPEKEQPPREEPRVPPLKIQLSKIGPPFIIKSQPVSKPESRGSPSTSVSGGRNTGARTLADIKARAQQARAQREAAAAAAVAAAASIVSGAMGSPGEGGKARTLAHIKEQTKAKLFAKHQARAHLFQTTKEPRLPPLSSKEGPPGLEVSSALETKIEGSPGVIIVNPNCRSPSNKAAHLRETTAVLQQSLNTMKLPETATDLTVHSSDENRPVSHLSEKIISSTSSENSSVPMLFNKNPVPVSVCSTAMSGAIKEHPFVSSVDKSSVLMSVDSTNTTISACNLSMLKTIQGTDTPCIAIIPKCVESTLPATKEGSSEVSPLDDKQLLVPSSSTGNLVSGQYTSVPTPSIGSNLPNHLSTNSVLIPATGMNHRFPSEKIAMSGSEEQATGSMGTTVRATLSCRDPGNPVAVTDALVARPPVAVFTGSMLTINSYESPPKLSAESLDKNSGTRNRADTSGKPQQPPGGFAPAAINRSIPCKVIVDHSTTLTSTLSLTVSIESGEGSLDLQSRSGRTEATVQPVACPQVSVISRPEPVANEGGDHGSSFIAASAAKQDDQMMQATCSSLRDVPLVVPDKLREGTPPSNSFAEQARSSSAFKSEADTACSNQYTPGSRICWSDDGLRSTGQPLLSHSGPSKPKECLEQSCAQAIKTEHAGYPHVSELHPRNLITNVTLPVKSEPHDVDKGFRMDTEDFPGPELPPPAAEAAPSVQPMQTVKASASGPVEEAVSLATDPLKRVPSAGSSSCRLSSVEANNPLVTQLLQGNLPLEKVLPQPRLGAKLEINRLPLPLQTTSVGKAPPERNVVEMPPNSPNPDGKGYLAGALAPLQMRKRENHPKKRVARTVGEHTQVKCEPGKILVDPDVKGVPCVINSGMNQLGHGQPLKQEWLNKHSLQNRISHSPEVKQQKRLLPSCSFQQNLFHVDKNGSFHPDAGTSHRQQFYQMPLTARGPVPPTALLQASSKPPVGCNVFAFNRHLEQKGLGEVGLPAAPHQLRLANMLSPSMPIKEGDDVGGAAHAMPPHKALVHPPPPPPPPPPPLALPPPPPPPPPLPPPLPNPEVPSDQKQPPVTMETTKRLSWPQSTGICSNIKSEPLSFEEGLSSSCELGMKQVSYDQNEMKEQLKAFALKNADFSSYLLSEPQKPFTQLAAQKMQVQQQQQLCGNYPTIHFGSTSFKRAASAIEKSIGILGSGSSPATGLPSQNAQMPVQNFADSSNADELELKCSCRLKAMIVCKGCGAFCHDDCIGPSKLCVACLVVR", "length": 2250, "header": "tr|F1SAK2-1|F1SAK2_PIG Isoform 1 of ASXL transcriptional regulator 3 OS=Sus scrofa OX=9823 GN=ASXL3 PE=3 SV=4 CANONICAL=F1SAK2-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FHU2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAK2/entry#A0A8W4FHU2-1", "sequence": { "sequence": 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"length": 2210, "header": "tr|A0A8W4FHU2-1|F1SAK2_PIG Computationally mapped isoform of ASXL transcriptional regulator 3 OS=Sus scrofa OX=9823 GN=ASXL3 PE=3 SV=1 CANONICAL=F1SAK2-1" }, "locus": { "chromosome": "6", "start_pos": 117518023, "end_pos": 117334333, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105106.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105106.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079013.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079013.1" } ] } }, { "isoform_ac": "F1SAK2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAK2/entry#F1SAK2-1", "sequence": { "sequence": "MKDKRKKKDRTWAEAARLALEKHPNSPMTAKQILEVIQKEGLKETSGTSPLACLNAMLHTNTRIGDGTFFKIPGKSGLYALKKEESSCPADGTLDLGCESELDGTEMAEASASGEGNCAKQVTDEASSTREASLTNTAVQSKLVSSFQQHTKKALKQALRQQQKRRNGVSMMVNKTVPRVVLTPLKVSDEQSDSPSGSESKNGEADSSDKEMKHGQKSPTGKQTSQHLKRLKKSGLGHLKWTKAEDIDIETPGSILVNTNLRALINKHTFASLPQHFQQYLLLLLPEVDRQMGSDGILRLSTSALNNEFFAYAAQGWKQRLAEGEFTPEMQLRIRQEIEKEKKTEPWKEKFFERFYGEKLGMSREESIKLTSGPNKDGAESSSSCGTSGLPSLSIQTPSQEQQPKSMKSPTSPESDFCATLCPMVDVGKDVMTESESEDILIPEESVIQEEIEEEVETSICECQEENHKVVPEFSEESESPAHSHEEPQMAPPEDNLESCVIMNDVLETLPHIEVKVEEKSESSQEEMSVVIDQLEVCDPLVPSTSSVTRVSDTEHVEPETAVETNTPEIKAGSSSLEGQFPSEGIAVDMELQSDPDEQLSENACISETSFSSESPEGACTSLTSPGGETQSTSEESCTPASLETTFCSEVSSTENADKYNQRNPTDENLHASLMSEVSPVSTSPEISEASLMSNLPLTSEASPVSNLPLTSETSPMSDLPLTSETSSVSSMLLTSETPFISSLPLPSDTSPISSSSMNDRMVHQQRKSTSIPEEPLSPPKDEGSAPAKPLGESLISQQNSLSNTPEPIKMGTSSTAPDAFSSEALHNKTLNPQPCKSHVETETPYPASIPELPSTEMIIVKNHNVLQRTEKKGMPSPLELPVFSEETESKGNELPLAKLQDKQYVSVVDKASFSEGSRNKMHKQGSSQNRLETSHTSKLSEPSKSPDGVRNESRESEISKRKTAEHHSFGICKEKRARIEDDQSNRGISSSSPPEKEQPPREEPRVPPLKIQLSKIGPPFIIKSQPVSKPESRGSPSTSVSGGRNTGARTLADIKARAQQARAQREAAAAAAVAAAASIVSGAMGSPGEGGKARTLAHIKEQTKAKLFAKHQARAHLFQTTKEPRLPPLSSKEGPPGLEVSSALETKIEGSPGVIIVNPNCRSPSNKAAHLRETTAVLQQSLNTMKLPETATDLTVHSSDENRPVSHLSEKIISSTSSENSSVPMLFNKNPVPVSVCSTAMSGAIKEHPFVSSVDKSSVLMSVDSTNTTISACNLSMLKTIQGTDTPCIAIIPKCVESTLPATKEGSSEVSPLDDKQLLVPSSSTGNLVSGQYTSVPTPSIGSNLPNHLSTNSVLIPATGMNHRFPSEKIAMSGSEEQATGSMGTTVRATLSCRDPGNPVAVTDALVARPPVAVFTGSMLTINSYESPPKLSAESLDKNSGTRNRADTSGKPQQPPGGFAPAAINRSIPCKVIVDHSTTLTSTLSLTVSIESGEGSLDLQSRSGRTEATVQPVACPQVSVISRPEPVANEGGDHGSSFIAASAAKQDDQMMQATCSSLRDVPLVVPDKLREGTPPSNSFAEQARSSSAFKSEADTACSNQYTPGSRICWSDDGLRSTGQPLLSHSGPSKPKECLEQSCAQAIKTEHAGYPHVSELHPRNLITNVTLPVKSEPHDVDKGFRMDTEDFPGPELPPPAAEAAPSVQPMQTVKASASGPVEEAVSLATDPLKRVPSAGSSSCRLSSVEANNPLVTQLLQGNLPLEKVLPQPRLGAKLEINRLPLPLQTTSVGKAPPERNVVEMPPNSPNPDGKGYLAGALAPLQMRKRENHPKKRVARTVGEHTQVKCEPGKILVDPDVKGVPCVINSGMNQLGHGQPLKQEWLNKHSLQNRISHSPEVKQQKRLLPSCSFQQNLFHVDKNGSFHPDAGTSHRQQFYQMPLTARGPVPPTALLQASSKPPVGCNVFAFNRHLEQKGLGEVGLPAAPHQLRLANMLSPSMPIKEGDDVGGAAHAMPPHKALVHPPPPPPPPPPPLALPPPPPPPPPLPPPLPNPEVPSDQKQPPVTMETTKRLSWPQSTGICSNIKSEPLSFEEGLSSSCELGMKQVSYDQNEMKEQLKAFALKNADFSSYLLSEPQKPFTQLAAQKMQVQQQQQLCGNYPTIHFGSTSFKRAASAIEKSIGILGSGSSPATGLPSQNAQMPVQNFADSSNADELELKCSCRLKAMIVCKGCGAFCHDDCIGPSKLCVACLVVR", "length": 2250, "header": "tr|F1SAK2-1|F1SAK2_PIG Isoform 1 of ASXL transcriptional regulator 3 OS=Sus scrofa OX=9823 GN=ASXL3 PE=3 SV=4 CANONICAL=F1SAK2-1" }, "locus": { "chromosome": "6", "start_pos": 117518023, "end_pos": 117334333, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004136.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004136.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004043.4", "url": "https://www.ensembl.org/id/ENSSSCP00000004043.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1339, "start_aa": "Thr", "end_pos": 1339, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1339", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FHU2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHU2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SAK2", "url": "https://www.uniprot.org/uniprotkb/F1SAK2" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SAK2", "url": "https://www.uniprot.org/uniprotkb/F1SAK2" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SAK2", "url": "https://www.uniprot.org/uniprotkb/F1SAK2" } ], "pmid": "" }, { "name": "peroxisome proliferator activated receptor binding", "id": "GO:0042975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042975", "evidence": [ { "database": "UniProtKB", "id": "F1SAK2", "url": "https://www.uniprot.org/uniprotkb/F1SAK2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SAK2", "url": "https://www.uniprot.org/uniprotkb/F1SAK2" } ], "pmid": "" }, { "name": "PR-DUB complex", "id": "GO:0035517", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035517", "evidence": [ { "database": "UniProtKB", "id": "F1SAK2", "url": "https://www.uniprot.org/uniprotkb/F1SAK2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SAK2", "url": "https://www.uniprot.org/uniprotkb/F1SAK2" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1SAK2", "url": "https://www.uniprot.org/uniprotkb/F1SAK2" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SAK2", "url": "https://www.uniprot.org/uniprotkb/F1SAK2" } ], "pmid": "" }, { "name": "animal organ morphogenesis", "id": "GO:0009887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009887", "evidence": [ { "database": "UniProtKB", "id": "F1SAK2", "url": "https://www.uniprot.org/uniprotkb/F1SAK2" } ], "pmid": "" }, { "name": "negative regulation of lipid biosynthetic process", "id": "GO:0051055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051055", "evidence": [ { "database": "UniProtKB", "id": "F1SAK2", "url": "https://www.uniprot.org/uniprotkb/F1SAK2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1221, "end_pos": 1223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1268, "end_pos": 1270, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1275, "end_pos": 1277, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1466, "end_pos": 1468, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1664, "end_pos": 1666, "annotation": "n_glycosylation_sequon" }, { "start_pos": 174, "end_pos": 176, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1918, "end_pos": 1920, "annotation": "n_glycosylation_sequon" }, { "start_pos": 828, "end_pos": 830, "annotation": "n_glycosylation_sequon" }, { "start_pos": 952, "end_pos": 954, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], 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"https://www.ensembl.org/id/ENSSSCP00000002613.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 244, "start_aa": "Thr", "end_pos": 244, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr244", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FIE1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIE1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154605", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154605", "resource": "KEGG Pathway" }, { "id": "R-SSC-674695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-674695", "resource": "Reactome", "description": "RNA Polymerase II Pre-transcription Events" }, { "id": "R-SSC-6807505", "name": "", "url": 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} ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SE01", "url": "https://www.uniprot.org/uniprotkb/F1SE01" } ], "pmid": "" }, { "name": "transcription factor TFIID complex", "id": "GO:0005669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005669", "evidence": [ { "database": "UniProtKB", "id": "F1SE01", "url": "https://www.uniprot.org/uniprotkb/F1SE01" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "F1SE01", "url": "https://www.uniprot.org/uniprotkb/F1SE01" } ], "pmid": "" }, { "name": "RNA polymerase II core promoter sequence-specific DNA binding", "id": "GO:0000979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000979", "evidence": [ { "database": "UniProtKB", "id": "F1SE01", "url": "https://www.uniprot.org/uniprotkb/F1SE01" } ], "pmid": "" }, { "name": "TBP-class protein binding", "id": "GO:0017025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017025", "evidence": [ { "database": "UniProtKB", "id": "F1SE01", "url": "https://www.uniprot.org/uniprotkb/F1SE01" } ], "pmid": "" }, { "name": "RNA polymerase II-specific DNA-binding transcription factor binding", "id": "GO:0061629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061629", "evidence": [ { "database": "UniProtKB", "id": "F1SE01", "url": "https://www.uniprot.org/uniprotkb/F1SE01" } ], "pmid": "" }, { "name": "RNA polymerase II general transcription initiation factor activity", "id": "GO:0016251", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016251", "evidence": [ { "database": "UniProtKB", "id": "F1SE01", "url": "https://www.uniprot.org/uniprotkb/F1SE01" } ], "pmid": "" }, { "name": "RNA polymerase II general transcription initiation factor binding", "id": "GO:0001091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001091", "evidence": [ { "database": "UniProtKB", "id": "F1SE01", "url": "https://www.uniprot.org/uniprotkb/F1SE01" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SE01-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 376, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SE01-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SE01" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1SEX5-1", "uniprot_ac": "F1SEX5", "uniprot_id": "F1SEX5_PIG", "mass": { "chemical_mass": 102605.0, "monoisotopic_mass": 102605.0 }, "refseq": {}, "gene_names": [ { "name": "TNPO2", "type": "recommended", "evidence": [ { "id": "F1SEX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEX5" } ] } ], "protein_names": [ { "name": "Transportin 2", "type": "synonym", "evidence": [ { "id": "F1SEX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEX5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEX5", "url": "https://www.uniprot.org/uniprotkb/F1SEX5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TNPO2", "url": "https://www.uniprot.org/uniprotkb/F1SEX5", "locus": { "chromosome": "2", "start_pos": 66288264, "end_pos": 66271496, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013726", "url": "https://www.ensembl.org/id/ENSSSCG00000013726" } ] } } ], "crossref": [ { "id": "F1SEX5", "url": "https://alphafold.ebi.ac.uk/entry/F1SEX5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013726", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013726", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000357", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040122", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040122", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10527", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10527", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02985", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02985", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13513", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13513", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25574", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25574", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FQ71", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQ71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FQ71-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQ71-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEX5", "url": "https://www.uniprot.org/uniprotkb/F1SEX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEX5-1", "url": "https://www.uniprot.org/uniprotkb/F1SEX5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDWQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEPTRSLSGLILKNNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIASKGELQMWPELLPQLCNLLNSEDYNTCEGAFGALQKICEDSSELLDSDALNRPLNIMIPKFLQFFKHCSPKIRSHAIACVNQFIMDRAQALMDNIDTFIEHLFALAVDDDPEVRKNVCRALVMLLEVRIDRLIPHMHSIIQYMLQRTQDHDENVALEACEFWLTLAEQPICKEVLASHLVQLIPILVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLPHEAERPDGSEDAEDDDDDDALSDWNLRKCSAAALDVLANVFREELLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLVARSNIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLNPEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCVPTPRCLSPPHHAPVSCFAPAPHKDTCPTPAHHPLTSCPLADSSCSPSSQVHIPQEHQGQRGEGLSLPRHLHDDRRQPRGRCAGWGSWALREGTGAGLGRPLTWDLSRFRTLFSSATL", "length": 913, "header": "tr|F1SEX5-1|F1SEX5_PIG Isoform 1 of Transportin 2 OS=Sus scrofa OX=9823 GN=TNPO2 PE=1 SV=4 CANONICAL=F1SEX5-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FQ71-1", "url": "https://www.uniprot.org/uniprotkb/F1SEX5/entry#A0A8W4FQ71-1", "sequence": { "sequence": "FLPCGPLSLSSLPPDEPTRSLSGLILKNNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIASKGELQMWPELLPQLCNLLNSEDYNTCEGAFGALQKICEDSSELLDSDALNRPLNIMIPKFLQFFKHCSPKIRSHAIACVNQFIMDRAQALMDNIDTFIEHLFALAVDDDPEVRKNVCRALVMLLEVRIDRLIPHMHSIIQYMLQRTQDHDENVALEACEFWLTLAEQPILLPLPSVPALASILCSGSYSEIDIILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLPHEAERPDGSEDAEDDDDDDALSDWNLRKCSAAALDVLANVFREELLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLVARSNIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLNPEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPKDDLRDMFYKILHGFKDQVGEENWQQFSEQFPPLLKERLAAFYGV", "length": 840, "header": "tr|A0A8W4FQ71-1|F1SEX5_PIG Computationally mapped isoform of Transportin 2 OS=Sus scrofa OX=9823 GN=TNPO2 PE=1 SV=1 CANONICAL=F1SEX5-1" }, "locus": { "chromosome": "2", "start_pos": 66286620, "end_pos": 66273756, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104789.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104789.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080496.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080496.1" } ] } }, { "isoform_ac": "F1SEX5-1", "url": "https://www.uniprot.org/uniprotkb/F1SEX5/entry#F1SEX5-1", "sequence": { "sequence": "MDWQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEPTRSLSGLILKNNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATIGILITTIASKGELQMWPELLPQLCNLLNSEDYNTCEGAFGALQKICEDSSELLDSDALNRPLNIMIPKFLQFFKHCSPKIRSHAIACVNQFIMDRAQALMDNIDTFIEHLFALAVDDDPEVRKNVCRALVMLLEVRIDRLIPHMHSIIQYMLQRTQDHDENVALEACEFWLTLAEQPICKEVLASHLVQLIPILVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLPHEAERPDGSEDAEDDDDDDALSDWNLRKCSAAALDVLANVFREELLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGNKRVQEAACSAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQKLMPPLIQKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYTQHPEQYEAPDKDFMIVALDLLSGLAEGLGGHVEQLVARSNIMTLLFQCMQDSMPEVRQSSFALLGDLTKACFIHVKPCIAEFMPILGTNLNPEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCVPTPRCLSPPHHAPVSCFAPAPHKDTCPTPAHHPLTSCPLADSSCSPSSQVHIPQEHQGQRGEGLSLPRHLHDDRRQPRGRCAGWGSWALREGTGAGLGRPLTWDLSRFRTLFSSATL", "length": 913, "header": "tr|F1SEX5-1|F1SEX5_PIG Isoform 1 of Transportin 2 OS=Sus scrofa OX=9823 GN=TNPO2 PE=1 SV=4 CANONICAL=F1SEX5-1" }, "locus": { "chromosome": "2", "start_pos": 66286354, "end_pos": 66272940, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015000.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015000.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014596.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014596.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 824, "start_aa": "Thr", "end_pos": 824, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr824", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FQ71", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQ71" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": 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"glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P07357-1", "protein_name": "Complement component C8 alpha chain", "gene_name": "C8A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFAVVFFILSLMTCQPGVTAQEKVNQRVRRAATPAAVTCQLSNWSEWTDCFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYGDDEKYFRKPYNFLKYHFEALADTGISSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGVGVSHSQDTSFLNELNKYNEKKFIFTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGITSRDITTCFGGSLGIQYEDKINVGGGLSGDHCKKFGGGKTERARKAMAVEDIISRVRGGSSGWSGGLAQNRSTITYRSWGRSLKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQYLMEFNACRCGPCFNNGVPILEGTSCRCQCRLGSLGAACEQTQTEGAKADGSWSCWSSWSVCRAGIQERRRECDNPAPQNGGASCPGRKVQTQAC", "length": 584 }, "evidence": [ { "id": "F1S788", "url": "https://omabrowser.org/oma/group/F1S788/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { 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"id": "F1S788", "url": "https://www.uniprot.org/uniprotkb/F1S788" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "wide pore channel activity", "id": "GO:0022829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022829", "evidence": [ { "database": "UniProtKB", "id": "F1S788", "url": "https://www.uniprot.org/uniprotkb/F1S788" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 364, "end_pos": 366, "annotation": "n_glycosylation_sequon" }, { "start_pos": 442, "end_pos": 444, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S788-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 589, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S788-F1.pdb", "url_external": 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Helps to bind spermatozoa to the zona pellucida with high affinity. Might function in binding zona pellucida and carbohydrates.", "evidence": [ { "database": "UniProtKB", "id": "F1S7B1", "url": "https://www.uniprot.org/uniprotkb/F1S7B1#function" }, { "database": "UniProtKB", "id": "ARBA00025518", "url": "https://www.uniprot.org/uniprotkb/ARBA00025518#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S7B1", "url": "https://www.uniprot.org/uniprotkb/F1S7B1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPA17", "url": "https://www.uniprot.org/uniprotkb/F1S7B1", "locus": { "chromosome": "9", "start_pos": 51931759, "end_pos": 51918916, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015197", "url": "https://www.ensembl.org/id/ENSSSCG00000015197" } ] } } ], "crossref": [ { "id": "F1S7B1", "url": 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"IPR047579", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047579", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1S7B1", "url": "https://www.orthodb.org/?gene=F1S7B1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10699", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10699", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10699:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10699:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00612", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00612", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02197", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02197", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003130071", "url": 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"id": "F1S7D9", "url": "https://www.uniprot.org/uniprotkb/F1S7D9" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1S7D9", "url": "https://www.uniprot.org/uniprotkb/F1S7D9" } ], "pmid": "" }, { "name": "RNA helicase activity", "id": "GO:0003724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003724", "evidence": [ { "database": "UniProtKB", "id": "F1S7D9", "url": "https://www.uniprot.org/uniprotkb/F1S7D9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S7D9", "url": "https://www.uniprot.org/uniprotkb/F1S7D9" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S7D9", 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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6791222", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791222" } ] }, { "id": "R-SSC-6791227", "name": "47S pre-rRNA is nucleolytically processed at A' (01,A1), site A0, and site 02 (site 6) to yield 45S pre-rRNA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. 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"protein_name": "T cell receptor alpha variable 4N-3", "gene_name": "Trav4n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERNLGAVLGILWVQICWVSGDKVKQSPSALSLQEGTNSALRCNFSIAATTVQWFLQNPRGSLMNLFYLVPGTKENGRLKSAFDSKESYSTLHIRDAQLEDSGTYFCAAE", "length": 110 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B695-1", "protein_name": "T cell receptor alpha variable 9D-3", "gene_name": "Trav9d-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLALLPVLGIHFLLRDAQAQSVTQPDARVTVSEGASLQLRCKYSYFGTPYLFWYVQYPRQGLQLLLKYYPGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDWAVYFCAVS", "length": 113 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6B4-1", "protein_name": "T cell receptor alpha variable 6-4", "gene_name": "Trav6-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTSPVLVTVMLLFMLGMRKTHGDSVTQKQGQVTLSEDDFLFINCTYSTTTYPTLLWYVQYLGQGPQLLLKVTTANNKGISRGFEATYDKGTTSFHLQKASVQESDSAVYFCALV", "length": 115 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6D8-1", "protein_name": "T cell receptor alpha variable 3-3", "gene_name": "Trav3-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "GEQVEQRPPHLSVREGDSAVITCTYTDPNSYYFFWYKQEPGASLQLLMKVFSSTEINEGQGFTVLLNKKDKRLSLNLTAAHPGDSAAYFCAV", "length": 92 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B759-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4E", "gene_name": "PPIAL4E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A075B767-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4H", "gene_name": "PPIAL4H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTDDKSIYGEKFDDENLIRKHTGSGILSMVNAGPNTNGSQLFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WP50-1", "protein_name": "Secretoglobin, family 1B, member 15", "gene_name": "Scgb1b17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMLAGAVVIFGVALLLLSSWGDCGICPAMKEDVHLFLNGTSEEYVEYVKQYKDDPEILENTEKIKQCVDSTLMEEDKAHANGFIEKIEASPLC", "length": 93 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPA9-1", "protein_name": "Secretoglobin, family 2B, member 18", "gene_name": "Scgb2b18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQSCYSEERIRNILLEPKIMEAMVASPECRSYHSFNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPG5-1", "protein_name": "Predicted gene 13283", "gene_name": "Gm13283", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLADLRSVPGHQCLRDRTDFPCPWKEGTNITQMTLGETTSCYSQSLRQVLHRFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPY7-1", "protein_name": "RNA binding motif protein Y-linked family member 4", "gene_name": "Rbmyf4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKR", "length": 166 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQA9-1", "protein_name": "Secretoglobin, family 2B, member 21", "gene_name": "Scgb2b21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACVPFFEGYASVVSGSRVWMYQEFQAFDATAEEKVALEKIQGCYREESLRNILLEPKIMEAMVASPECLSYYSSNNIRCILDLLSKLLGQ", "length": 112 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQJ0-1", "protein_name": "Secretoglobin, family 1B, member 11", "gene_name": "Scgb1b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLVAAVVILGAALLLLTSGGDCGICPAIKEDVRLFLNGTSEEYVEYVKQYKDDPVILENTAKINQCVDSTLTEKDMTHTTTFLKKIEDSLLC", "length": 93 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQP8-1", "protein_name": "Predicted gene, 21698", "gene_name": "Gm21698", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHGQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR36-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r90", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNEAMKTTEEVALQIVLLCQFGIGTMANILLFIHNFSPLLTGCQLRPKQVICTNMAVSSILILFMTVFPNNVFVVQRNLMNDLQCKLEYFLRMVARSINLCSTCVLSTYQFVTLLPGNFGEMMVRGRRSKVISYSCCSCWLFGVLYNVYIPMKVSGPQNTHNKTDIKSKWFCVTSGFSVGIMFLWFAHDAIFISIMIWTSVSMVLLLYRHYQRLQYIFPPHQGTRGYAEIRAAHSIAMLVVTFVSFYLLHCICFILHIVFVDSRLWLRHVGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYRKPVI", "length": 309 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR44-1", "protein_name": "BTB domain containing 35, family member 15", "gene_name": "Btbd35f15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR49-1", "protein_name": "Secretoglobin, family 2B, member 11", "gene_name": "Scgb2b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQGCYSEERIRNILLEPKIMEAMVASPECRSYHSLNNFRSILEFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSM5-1", "protein_name": "Predicted gene 29049", "gene_name": "Gm29049", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSLKKKSRRKPSSQALGNIVGCRISYGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELHSDERILNLKVLPHKVVFLQVRDVHLASALVCREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKDPVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANSTVYCIKFLGDLHIYVYTLVSNIT", "length": 227 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSN2-1", "protein_name": "BTB domain containing 35, family member 16", "gene_name": "Btbd35f16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLLFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLNFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WUL8-1", "protein_name": "NBPF family member NBPF19", "gene_name": "NBPF19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLFHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEEHISFALYLDNRFFTLTVTSLHLVFQMLVIFPQ", "length": 3843 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WXS9-1", "protein_name": "TBC1 domain family member 3I", "gene_name": "TBC1D3I", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087X179-1", "protein_name": "TBC1 domain family member 3E", "gene_name": "TBC1D3E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDQAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0A0MQP3-1", "protein_name": "BTB domain containing 35, family member 12", "gene_name": "Btbd35f12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDSDLSITPLEVPQGLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YW58-1", "protein_name": "Immunoglobulin heavy variable V8-2", "gene_name": "Ighv8-2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRLTFSFLLLLPVPAYVLSQVTLKVSGPGILQPSQTLSLACTFSGISLSTSGMGLSWLRKPSGKALEWLASIWNNDNYYNPSLKSRLTISKETSNYQVFLKLTSVDTADSATYYGAWR", "length": 119 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXW2-1", "protein_name": "Predicted gene, 20773", "gene_name": "Gm20773", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKIFKVEKS", "length": 232 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXX7-1", "protein_name": "Predicted gene, 20807", "gene_name": "Gm20807", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHTFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKVLEVEKS", "length": 232 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0B4J1J8-1", "protein_name": "T cell receptor gamma, variable 4", "gene_name": "Trgv4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNPGSQALLPLYLPWEANLADENPLLKVVIFLCLLTFGHGKLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG", "length": 138 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JE01-1", "protein_name": "Predicted gene, 21663", "gene_name": "Gm21663", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADPPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JGR8-1", "protein_name": "Predicted gene, 21680", "gene_name": "Gm21680", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWRMWMAHRQTTSPVPVTSKKQFEKEEKELIKKIQLTTKEINELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELVLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JMD5-1", "protein_name": "PRAME family member 33", "gene_name": "PRAMEF33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLMKTPHLETLQAVLRGLDTLVAQKVRPRRWKLQVLDLQDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPRMGEHQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQELEVWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNIKEHLEHLLRYLKNPLGAFIFSDAYLADRDMECLSQYPSLSQLKELRLIHILMWTTNLQPLGALLEKVAATLKTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLDYKGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPTCGSWPSEKVDFHLCS", "length": 474 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JNH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC124905359", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFFSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHCSTVMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDNFFCDVRQVIKLACTDMFVVELLMVFNSGLMTLLCFLGLLASYAVILCHVRRAASEGKNKAMSMCTTRVIIILLMFGPAIFIYMCPFRALPADKMVSLFHTVIFPLMNPMIYTLRNQEVKTSMKRLLSRHVVCQVDFIIRN", "length": 316 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JTV6-1", "protein_name": "RIKEN cDNA 4931429L15 gene like", "gene_name": "4931429L15Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQFNPFSQDTWRHGHRRAYSNISERLSCLTLQEPSVSHLYQIFSPGDRRSYLLDDSLSNSIQRESLAVPMGLEDSGSRGQQKQQQPGAVLEDLEEQEIAPTDVKYRLQLLDEAPLRSKSSSVQSQGHKPGWIPSSKTHREWFKPWKMDMTYPENERSHSGHTQGRRMTPRAQWRHVEYDSQDQDTQSPVWSQALFPGLDKSSQGVIQCTQHVSREREMVSGWSMTHAPQEMGQAKQGPAFLKTKGTAKFNVATTARMSCLPPLKLLEKKVKSRCPPNTPGIFQDWRAQPQGLYGSDERLLAPFEDQVNTRVTYMPLFTEKVKFVSPKTAVSNPKQTHSQLSRTNQPAFPGQFRNWTSGREHLEKGLPE", "length": 368 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JVP7-1", "protein_name": "40S ribosomal protein S26", "gene_name": "Rps26-ps4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKKRRNNGRTKKGRGHVQPIGCANCSWCVPKDKAIKKFVIWNIVETAAVRDISEARIFDAYVLPKLYVKLHYCVSLAIHSKVIRNQSHEARKDRTSPPRFRPAGAAPRPPPKPM", "length": 115 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW93-1", "protein_name": "High mobility group protein B4", "gene_name": "Hmgb4l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRDKDRYQREMRNYSGPRRERRRRDPDAPRKPPSSFLLFSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYHQCQRGE", "length": 168 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW96-1", "protein_name": "Zinc finger protein 94 like 1", "gene_name": "Zfp94l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRGSCDVMLESLRNVASLGHRIGTPDGLLRLKREDMFWLLTVARWSSGSMGDKNLEDMEFLEEVGLRHLPHEELFCSQIWQRITRELTKVRDCRVRVGENGSPMKRDNREDEYSKHSSQNSVFQVHHRECHEEEANERDFGCSHHLRTSTGEKSYKCEKCHNASHWFSSLQSHQGVCDRPRWNKSVSQFKIFRQWPLFHYQQSMPNGENAQEYEACGNAGKNSSGQTALFVHTAEEPYSCEECGARFSQSSYLQVHQRVHTGEKPYKCEECGKGFGWLSQLHAHHQSHTGEKPYTCDACGKGFSYSSHLNIHCRIHTGEKPYQCEECGKGFSQASNLLAHQRGHTGEKPYQCDACGKGFSRISDFNIHIRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCNTCGKSFRRSSDLNVHCRIHTGEKPYRCEKCDKVFSQFSSLQVHQRVHTGEKPYQCSECGKGFSVGSQLQAHQRCHTGERPYQCEECGKGFCRASNFLAHHGVHTGEKPYRCDMCGKHFRQRSYLQAHHRVHTGEKQFRCEECGKGFSWSSYLQAHQRVHMGEKPYKCEECGKGFSWSSSLLTHQRVHAEDEGQKDLSSSGGSYRK", "length": 616 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JYP5-1", "protein_name": "Olfactory receptor", "gene_name": "Or8g52b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEGNHSRVTEFILTGLTDKPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSHLQTPMYFFLSGLSFIDLGYSTVIIPKMLVNFVTEKNVISYPGCMTQLYCFIAFVLCECYMLSAMAFDRYVAICNPLRYNVTMSYQVCFWMIGGVYSIGFIEATIHTVCMLQVFFCKANVVNHFFCDLLPLFQLACSSTFVNETVLLCLSTLNFCVPTLTILSSYSFIIARIIRIKSTESRFKAFSTCSSHFSSVAVFFGSLGFVYFQPSSVSSKDQGKVSSVFYTIIVPMLNPLIYSLRNKDVKLALNKLFQKKIFHM", "length": 312 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K381-1", "protein_name": "Killer cell lectin-like receptor, subfamily A, member 4", "gene_name": "Klra4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQEVTYSTLRFHNSSGLQNQVKTNETQGPRETGHRGCSVSWHLIMIPLGILCSILLVTVAVLVTHIFQYSQEKHELQEALNKLHHNYSTMQNESYLNEEMLGNKSSECDAYKSVLDSLNRQQNTCLRLTNIVLDCLQHKGRQVNVHLFCCGIKCYYFIMDKKQWKECEQACQGCKLSLLTIDDEDELKFLQLQVTPDSYWIGLSYDNKKHDSAWIDNNPSKL", "length": 224 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K3S0-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c109", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNQSFVNEFILLGLSQNPQIKKISFVIFLLVYIATLVGNMMIVVTIAYSPALLGSPMYFFLAVLSFLDACVSSVVTPKMIVDMVYERKSISFECCMTQVFAVHFLTAVEVIVLAAMAYDRYVAICKPLHYSSIMNRRLCGTLVGVAWAGGFLHSIIQIAFTLPLPFCGPNVIDHFICDLFPLLKLACTDTHIFIILVFANSGSICIIIFSFLLISYGVILFALRAHSSEGRRKALSTCGSHITVVVFFFVPCILIYARPTSAFSFEKNVFVFTDVLTPLLNPMVYTFRNKEMINAIRKMWKRLIVVSDKY", "length": 311 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K622-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH", "length": 169 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K698-1", "protein_name": "Lamin tail domain containing 1", "gene_name": "Lmntd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHLASSHRVQKSSLARPERRAKSPSYTDISFWVPVMHRVGSQYQFESVCEQSSGYPGMPAQQVTPVPSQRGGILRKEEKTGTITPSKQHSSVHFFPKVMDSSSTLHLLSGSFSHEASANFHQIPSAQDSLSPGGLLTSKSNVPSCSRKDSIPGKQSTHQAASPGTSLMTLKKQPKPSSDLDTYVLGDGEDYFLSLFGDSKKLTSHTSQAEDVSKHLSVILEEVGQFVSSSLGDIKIAEVNVKGFFVRLVNSSNEKEVEIGNYILQQNVNGQAVSLYRFPHNITMQASGTVTVWAAASEAKPQQPTDFVWEEQSRFRSSPDCTTILCKPSGEAIAWYTPIHWKQAWEKLETDIEFERCSVVIPSLKSHIFGRTTSSVSSINKEKQEPTQKTPPQVCSVLLREKEILLTVLPNKSPWCRSPDTPPHPYSSLIEWHDSDFPGSSLGTQPKPQSTKPKPDPGTKEKKSTR", "length": 467 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6E6-1", "protein_name": "Rho GTPase-activating protein 20-like", "gene_name": "LOC120093152", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDEELVRANKTCTCKTIFFYWATGNALATFRSEEQKVQWYTFLTSRSISEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHKIEDYQLWFSPGHKEAPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERRRKSCMTSCFHGGCVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTKSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAVASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQAEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKMFYGRDLSKKLSIIQFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKANTKELEMSSAVPHEGGPTAGHNGTTSKYNVPQEIILHD", "length": 835 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6V9-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVVFFLGQGSYGRVRLAWHRRTQALVAIKTVEISKDTIRGILSEMTTLESLNHPNIISLYEVLITGTGVHFILQYAPGGNLGKLISEEGPLPEEKAKKMFGQVVSAIRYCHSLDIVHRDIKPQNILIDGEGNIKLIDFGQAIKCKPGTLLSRHCGTRDFNAPELVLREPYDGKSSDVWSLGVVLYFFTTGYLPFRGKTINDVEERITTGTYTIPTHLSGQLENLIHQILRVSPDMRPSVEEIENHPWIKKCEFKILPKTDPDYKIIEMLCAMGYKAKDILESLQKKRYDEPMGAYLSLKDHVSKGFDVGYITPAKPGDPCPPPPPSPAHPSVFGLPLRRRASEPIFGLHHRPPSREQNPLDLILSGLKMSRCVSMPPIAVYYPKKERSTSTRALHSTPVACPCVSNNMSEVEIILPPKQDIEMNTSSPPQRMGWFKRLRKGIRDCFSRLCCLPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K894-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHLLNVTEFIFLGLSPNKEGQRVCFVLFLLLYMAIVLGNLLMVVTVAASRNLGSPMYFFLSFLSFVEICYSSTTAPKLIFDLLAEKKSISVWGCMTQLFFMHFFGGTEIFLLTMMAYDRYVAICKPLHYTSIMNQQVCAVLVGSAWIGGFVHSFSQILLILPLSFCGPNVIDHYFCDLLPVLKLACSDTFLIGLLIVVNGGTLSVISFVVLLASYLVILFHLRTQSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRPSDTLPVDKMIAVFYTVITPLLNPLIYSLRNAEVKKAMKNLWFRIMKADEK", "length": 309 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KB39-1", "protein_name": "Myb/SANT DNA binding domain containing 5 like 1", "gene_name": "Msantd5l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQREANQGESLENTEESNVGKSVKEEEQRPSGRSRSSWTDSEIRVFLQEWEVVEQEMGQPGRKLHKKTKSLCQRLYQQGLKKSWKSCFHLLLSLQDLHRTLCNERPGIEPLFSPYSEALYRILGSTPHESWFPGPLYDEADDSMLPVYPQPPMYQPSDYGITVPSAQLQGNPVPMMCQEDSPFPTWEPWNPSYPLSVPHLLPGFAPGDPSLQQPWSMCDLHQDPQ", "length": 225 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KBC9-1", "protein_name": "Leukocyte immunoglobulin-like receptor subfamily B member 3-like", "gene_name": "Lilrb3l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTFTFTALLCLGLTLRLWIPVLTGSLPKPILRVQPDSVVSMGTKVTFVCEETIGVKESHLYRNGNLQRTVLKNHQKPTNKTEFSFSNVDQQMQQYQCSYRTQTKSSDYSEPLELVVTGAYSKPSLSAQTNPVVTSGGYVTLKCEPSQDNHTLILTVEGSQKHSWRKDPECNRYTEKCHALFYVGPLTSNQRWIFRCYSYEKHTPQVWSAPSEPVELLVSGKLQKTTIKAEPGSVIRSGRAMTIWCQGDLDAEIYFLHKEGSHNTQSTQTLQQPGNKAKFLIPSVTQRHAGQYRCYCYSSAGWSEPSDTLELVVTGIYYYGVKLSGLPSPVVPEGGNVTLHCTSHSNYDKFILTKEDQKFTSSLDAEYIPSTGQHQALFVMGPMTPNYSGTFRCYGYYKHTPQLWSVPSELLKIFISGPSRKPSLLSHQGHILEPGMSLTLQCYSDTKYDKFALYKEGGTDIIESFSQWTKAGLSMTNFTLSVMPNSTVHSGENVTLMCWSTYSVDTFILSKEGSGQPPLRLKSKIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLKALIGVSVAFLLFLFILIFILLRRRHQEKFRKDDEDAQKGKELQLSTGAAEPVTRDRGHQKRSNPAAATQEESLYASVEDMETKDGVELDTWKPPEGDPQGETYAQVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQEVDSQATESEEPQDVTYAQLCSRTLRQGTAAPPLSQAGEAPEEPSVYAALATARPGAVPKNKKQ", "length": 761 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KIH5-1", "protein_name": "Major histocompatibility complex class I LLA precursor", "gene_name": "mhc1lla", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTGKVLFVLFLLSAPTTVLTDSHSLWLLGTYIKGETQFPKLSFTVMLDDLRVGFYNSETKEFIPRDNTTNEDEAVSDVLTVIQNTLEPFMMSTLTFKNGTESPQLFQITWHCELLDNDKPGQIIFKIAFSGSTTDEVSFYNDNFTCQCQNNMATVPLESFQMHYETVCYPNCIATIRDYLKKRQTQVNGKVQPKVRLIKKVHPKSGGFRLSCLATEFYPHSINLTLLRDGQPVSDHEVTGGNLLPNGDGTYQMRKSLEIRADEREKHKYTCSVSHLSLDKILDIDFEFDPSFLIKIVIPVVVLLSLMLVLTAVLIHKCKNKRAESKETITTASTPEPTEMSETLRK", "length": 346 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLESMMACCMSEEAKESKRINAEIDKQLRRDKRDARRELKLLLLGESGKSTFIKQMRIIHGTGYTDEDKRGYTKLVYQNIFTSMQAMIRATEHLKIPFRFEDNKKNALLVREVDVEKVCSFEQPYVAAINKLWMDPGIQEAYDRRREYQLSDSTKYYLNDLERISSRGYMPTQQDVLRVRVPTTGIIEYPFDLENIIFSYLSDLERISDPSYLPTQQDVLRVRIPTTGIIEYPFDLQSIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILCSHLVDYFPEFDGPQNDAQSAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQHNLKEYNLV", "length": 400 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILG2-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVESPEHSDADFTYDYELIRRGGLIFAAVLFCLGMVIIFSKKLRCGKSSATHEDNGDL", "length": 59 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IU63-1", "protein_name": "Metabotropic glutamate receptor 5", "gene_name": "grm1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMLILRMNFFIVFLLFCTRLHLSTERSAVSRAASRSVARMDGDIIIGALFSVHHQPSAEKVAERKCGEIREQYGIQRVEAMFYTLDRINSDPYLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEREGPKWCVEGNPSAQPPATKKPIAGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARALLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELASQEGLCIAHSDKIYSNAGEKHFDRLLRKLRERLPKARVVVCFCEGMTVRGLLMAMRRLGVAGEFLLIGSDGWADRDEVVEGYEEEAVGGITVKLQTEEVTSFNDYFLKLRLATNNRNPWFAEFWQHRFQCRLAGHPQENTNYRKNCSGYESLEDNYVQDSKMGFVINAIYAMAHGLHDMHEHLCPGHVGLCEEMDPIDGSKLLDFLLKTSFAGVSGEDVWFDENGDSPGRYDIMNLQYVEPGVFDYINVGSWHEGILSIDDYMIQMNRSEMVRSVCSEPCSKGEIKVIRKGEVSCCWICTPCKDNEYVQDEFTCKACELGWWPDEELQVCEPLPLRYLEWSHPESIAAVVFSCLGILVTSFVTLVFILYRDTPVVKSSSRELCYIILAGIFLGYICPFTLIARPSIASCYLQRLLVGLSASMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVVIAFILISMQLTLEVTLIILEPPEPIKSYPSIREVFLICNTSNMGMVAPLGYNGLLILSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITTSFSVSLSVTVALGCMFTPKMYIIIAKPERNVRSAFTTSDVVRMHVGDGKIACRSNSLLNMFKRKKNASGNANSNGKSVSWSEPGSRHPPKGEHMWHRLSVHVKKQEAGSNQTAIIKPLTNTYNNPGMEFSDLSTKTLYNVAEEDEIDPIRYNPSNSPHLMAPVSKPMKEVGANLTFYTPEQHVPQQNSVLPQHAMIEHFQDDVVKYNSNMADLDEIISLPEPTDGIILALQPQVLHPHPILPMNVYQDEPSSPLEEVENEQFGLLHGYMYDNAQIHDEEELVQIKMAMEDSMALMPPSPFRDSLGSGSPVRNSPVSESVLCTPPSVTYASVILRDYKQSSSTL", "length": 1158 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IUN8-1", "protein_name": "Trypsin inhibitor ClTI-1-like precursor", "gene_name": "spink2.9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLAQIVLLLCLSVMATAADKCPSVPNCSRYHPHACTMEYWPVCGSDGNTYGNECELCATIFEEKLNIILISKKGEC", "length": 76 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4J2B9-1", "protein_name": "BTB domain containing 35, family member 23", "gene_name": "Btbd35f23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPVSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFTNILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQKCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICNLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNQEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A140T8Q5-1", "protein_name": "BTB domain containing 35, family member 21", "gene_name": "Btbd35f21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMILYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GQX3-1", "protein_name": "Cortexin domain containing 2", "gene_name": "Ctxnd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCVLMEDSSMSNGIDVDKGFAIAFVVLVFVFLIVMVFRCVKLVKNPYEVSSTTADLPLN", "length": 59 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GRH6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 3", "gene_name": "Zscan4-ps3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVRQFPHGARRASQGTPSHHVDIQSPPTTADVTMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGFPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCKSHQKRFCRDAKLYKCEECSRMFKHARSLSSHQKTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GS00-1", "protein_name": "Predicted gene, 36210", "gene_name": "Gm36210", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHPGSPAAPGVSEPGPRELCAFVSGASAHMLRALQPRRIRPSKRRPNHRRFLHNQICREFAKIEAATQHLALTILSQKAPAQRPPFRRPPPPPPSPFLGVACAEAPMEAPHGSPSLSPVALDTSTLDLFDDILLTPTPRPLVTPDSFCQTLPAGNPQVASDVISHALGPGDQGQPTPIQAPRFSNLLLPPQKAQGGSLEPAALGCGWVDSWEAPYACDPQGVLDSWGAL", "length": 229 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSB3-1", "protein_name": "Family with sequence similarity 236, member D", "gene_name": "Fam236d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATEGVATAHTMLTSRGPRDTREPAPPTRSWRSRFQRALARVSKFFRRGRRTARG", "length": 72 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSI2-1", "protein_name": "Family with sequence similarity 236, member C", "gene_name": "Fam236c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATAHTKENSSRGPRETREPAPCTRSWRSRFQRAVARVSKFFRRRRRST", "length": 66 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYU6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 2", "gene_name": "Zscan4-ps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEGNVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSVPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYV3-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 1", "gene_name": "Zscan4-ps1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWAIQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYTLTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNTSCNATEGNVGERCGGNEMDSLLIIQKEQHPEHEEGNVVCRFPHGARRASQGNSSHHVDFRSALTPADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSSDNIPRKKTDSLSINKRIYHPEPEVGDIPYGVPHDSTRASQGTSTCLQESLGECFSEKDPREVPGLESRQEEPISDPVLLGKNHEANLPCESHHKRFRRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCFTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1D5P3Y4-1", "protein_name": "Large ribosomal subunit protein uL24m", "gene_name": "MRPL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLSALLRLAAPPKLPKGYRHGTWRPGTAAERLRNPPGQRRKKIFVEPISREDWKVFRGDTVQVLTGKDAGKQGMVTQVVRARNWVVVEGLNTHYRYVNRDAKYSSTYIASEAPLLLNQISLVDPEDRKPTEVDWRYTEEGERVRVSLRTGRIIPLPLWQRRDGIVPEQWIDGPKDTSVDDALDKTYTPSLKTFEEEIMDAMGIVETRRAKKSYWY", "length": 216 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PNZ8-1", "protein_name": "ODF3A protein", "gene_name": "LOC124417034", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPATKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5RLF0-1", "protein_name": "F-box and WD-40 domain protein 27", "gene_name": "Fbxw27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METHLPSLPLMKIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLFCDMVTLQLQDKETWKQFFVYRTWQEHSKTRANPRDFTYKEIPLQYGPCGYACYISGCGITRKGQDKSVVCMVNSKNTISTWDVHKSVITWVSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNILESPCKSLKAVITKDDPIVLVSDILGNLYIFRIPDLHLISTVNVLPCDIDEIYCSPQKKWVLLSKKQPYILPKVFYMSSLLRTSEFSAPVSTLLEISLCQEAFWTPRREDRLTLMSRSGCSKITKFETYDMKLEEFGNKIIVKGNSIAGFLLPYYTESLNWFGVSDKDTIVCSTEFSLLLFTNNGHRLQTFQYFSETIVRLSVDPVHVIVTCNDGSLDVYAWEERSLLLRKCYRLKNRRHLSPRGFINKTLCDDVSIIQLMIDGHDTWFLMAYALNICS", "length": 466 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1P8ASP4-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4KB", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVSDKHVESNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRDEEVQYNDDENVNGGDLDMEEGEILGKEGIGETLKKKLESVDEFGDIKSGQFRENNLAFNGDDGFPLICKSWIRVYNYLSYKCHGRNQRRERECEKRKEIEPDRERRKERGSVDRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSEKDRDKGREFQSDREKHKSLDDGYGEVRHKHSGHSRHDAEDDLELRSPTSVNGHDPNSGDVKETRGNVERTRIDNDDKGDVVVWEVEQEDEELNLIEESRRRTQAIMEKYKKKLEQQNGFSSHDLELANIPKQSSTVADVLGSGTLGPVTSAVNQAKAGLDIDAVDGEVAKLSSAVGESPAQLVISDSDRTLASTGLGEGSPKDKISDDMFTDDIFGESPADSQKMVCTLTQIIDLVFIEFSNSGFICFVFPVHHLTRYSRNGLPFVHYIFVGYLRGKGNGIPIVRSGLDDNWDDAEGYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKAELGEPEEVAIKIIRNNETMHKAGQTEIQILKKLAGSDPENKRHCVRFLSTFKYRNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPDNMLVNEGRNTLKLCDFGSAMFAGTNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELFSGKIMFPGSTNNEMLRLHMELKGAFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTRKTTKRMMVNIKPKEFGSVIKQRYKDEDSKLLVHFRDLLDRIFILDPQKRITVSQALAHPFITGK", "length": 834 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BFV1-1", "protein_name": "Bax inhibitor-1 family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGLKDFSRISPAIQSHLMRVYFSLFCILAASAFGAYLHMRLNIGGTITKLGWVLSLLEHVVSCPPYKHKIRFSLLLLFGVLHGASVGPCIKSTIDIDSSILITAFLGTAVIFFCFSAVAMLARRREYIYLGGLLSSGFSLLTWLKNSDQFASATVEIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIMWNTSADRIRRNNEET", "length": 226 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1W2P6Q8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7S8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKMRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLIGGLNTPLHESDFSGVTPQQQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLHINPEDGMADHSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQATRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPFDVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGFATNDSEHITYLEHSPYEKFSKEDLKKAQDALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSCYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLEEDVQRQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7Z8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P855-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAIMKYRKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2PP81-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 5", "gene_name": "TAF11L5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A1Y7VLT7-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1Y7VNG9-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRHRGKNENESEKRELVFKEYGQEYAQVTKMLGCLWLEAMCFDGVKRLCHIRGKLRKKVWISTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINETDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YCH8-1", "protein_name": "Predicted gene, 47985", "gene_name": "Gm47985", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGAPHNSAKRHRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPIVLQRAWLTWQLSHAGAALHWALHTVKSILTSQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YD13-1", "protein_name": "Predicted gene 8947", "gene_name": "Gm8947", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKREQLLDKKAEDKQPPESRCNNGRSSKSSPMGKENTWPSREAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDQRSQPRSPVRTLKRSRSGDRQGAPHNYAKRRRQTFPPEASCSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYIWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 301 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YE43-1", "protein_name": "Predicted gene, 47996", "gene_name": "Gm47996", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGVPHNSAKRCRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286ZIN6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258935", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANLTSMSGFLLMGFSDDHKLQILHALLFLVIYLLALTGHLLIITITTLDHHLHSPMYYFLKHLSLLDLCFISVTVPQSIANSLMNNGYISLGQCILQVFFFIALASSEVAILTVMSYDRYVATCQPLQYETIMDPWACRQAVIAVWVTGGLSGLTHTAINLSVPLCGDRVIHQFFCDVPQMLKLACSYEFINEIAVAAFTTSTAFFCLISILLSYTRIFSAVLRIPSAQGRTKVFSTCLPHLLVVTFFLSAAGFEFLRPPSDSQSAMDFMFSIFYTVVPLTLNPVIYSLRNKAMKAALRKVLSKEEFAQRKKYFKALFQL", "length": 321 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZIP8-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259124", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "QEYKANGGDNTTTIIHFVLLGFSDFPHIRPALFVVFLVIYILTLTWNLCLIVLIRLDSHLHTPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECCLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVQVLTAIFTVFFGIINALVIMMSYVYIVISVMKITSAKGRSKAFNTCASHLTAVTLFYTSGIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 316 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZLI4-1", "protein_name": "C-C motif chemokine ligand 24", "gene_name": "CCL24", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFSPSSLIKASGQLQCPAGNRLLAPTLSSCIAALSPELPLLLSRHGRPVTVAASLLFLGLCAYSFAPADSVTMPSSCCIYFISKKIPESRVASYQLSNSSVCPQAGVIFTTRKGQKFCGDPKQLWVQKYMKKLDAKRKKASTRIRAMGTGAPVRRGPANSTSI", "length": 163 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZSE3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258059", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPKLQVLIFIFLFVAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEISFISSCIPRYLYSIATGDKVITYNACVIQVCFTDLCGVTEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSVQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZU87-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100152920", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILETMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDHYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSTVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSWRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZVC9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258401", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZWC4-1", "protein_name": "Zinc finger protein 16", "gene_name": "ZNF16", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLPLSQVPAMPSLRTRPGKAEMEPSVPGPSLRTPGTQVSVSDAPAVTHPGSALHGPLSCGDTEPGATPPHHQLADWDLRTEGSQLLQKEDASEDLESQAGTSEDYVGAGSQAPERGELCADVLGSDWGVPQGERLSLCQEGGFMPAYLLPGSPLEEPEIDTEPLERNFGLIITPVASPGEPEEETPQPFDACDQSVHCGVDLAGHEGLHAAESSFICGECGESVGLHSDLLRHRLSHRGEKPHVCAECGEAFSQSASLESHQRSHEPAKPFQCSTCGKAFGRSSSLIKHHKVHTRERPHACGECGRPFSRFSNLVKHRRVHTGEKPYRCSECGKAFSQSSSLLQHRRVHTGEKPHVCPVCGKAFSYSSVLRKHQIIHTGVKPYSCSACGKAFSHSSALIQHQGVHSGDKPYECRECGKTFGRSSNLILHQRVHTGEKPYECAECGKTFSQSSTLIQHQRIHNGLKPHECDQCGKAFNRSSNLIHHQKVHTGEKPYTCVECGKGFSQSSHLIQHQIIHTGERPYKCGECGKAFSQRSVLTQHQRVHTGEKPYDCEACGKAFSQRSKLVKHQLIHARE", "length": 576 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZX75-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100156955", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "IFIMEWENQTASSDFILMGIFSHTPTHIFLFSLVLGIFTVALLANTVMVLLICLDRRLHTPMYFLLSQLSLMDLMLICTTVPKMARNYLSGRKSISVAGCETQIFFSVSLFGAECFLLAVMAYDRYAAICYPLQYPQLMNWNVCGLLAASSWILGVFDGIVDIAATLSFSYCGSREIPQFFCDITALLRLSCTDTSTFETLVFICCVVMLLFPLSLIIISYTRVIITVIRMSSGEGRHKAFTTCSSHLVVVGMYYGAAMFIYMRPTSNRSPAQDKMVSAFYTILTPMLNPLIYSLRNKDVAKAFSRCWGREI", "length": 312 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZY56-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258501", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METDNDTQILEFLLLGFSKQPESQPIIFGLFCSMYLITVFGNLLIILAVISDYHLHIPMYFFLSKLSFVDICFTSTTIPKMLWNIQTQSKAITYEGCITQIYFLILFAVLDILLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLVPWIMSVLNSLLQTLMMMQLSFCTNFEIPHFFCELNQMIQLACSDTFLNTIVMYFAAALLCGGPFFGILCSYSKIVSSIYRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAAAHSSHSSATASVMYTVITPMLNPFIYSLRNKDMKRALKALFVKGPM", "length": 310 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZZP6-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHLPNYH", "length": 402 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7E2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258743", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFPDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKVACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7J9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258750", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVKEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLAFVDLCYATAITPKVLQNLMSTEKSISFIGCMVQLFVYGTFVTSDGYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSCFMGFLNACVNGSLTFQLNFCKSNKINHFFCDAPPILALSCSSIYFNIMLLAAFVGFNLMFTVSIIIFSYIFILAAILKISSAAGRKKAFSTCGSHLTAVTIFHGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMLNPLIYSLRNQDVREALKEIGKKML", "length": 309 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A951-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "LOC100514137", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVHMNVLTDALESINNSEKRGKRQVLTRLCFKVIVRFLTVMMKHGTPIGKFEIMDDPRARKIVVNLTGRLNKCGVISPRFDGQLKDLEKWQNKLLPSCQFGFIVLTTSAGIMHHEEAR", "length": 118 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ACV2-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDAPTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLIKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEDSAWNKLQFYHNPNFKRGCPNLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSTSTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHRISNFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSVASLSRPNPQSSSISEHHPNYY", "length": 402 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AEV7-1", "protein_name": "Uncharacterized protein", "gene_name": "WFDC10AL", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKWWGLQWLMLSCLAILPASGNWQERISASLEALTQSKLIPGMKPCKTIPTKEQCTYFCDLPRACPTGLLCCSASCGNVCMPPKGHGNRRSSHKISNFLFTAEPIKQQ", "length": 108 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AF12-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTNTKGKRRGTRSMSSSPFRKHGVVPLATYMRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRVYNVTQHAVGTVVNKQVKGTILAKRINVHIVHIKHSKRGDNFLKRVKENDQKKKEAKEKVTWVQLKHQTAPAREAHFVRTNGKEPELLEPNP", "length": 155 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AGK9-1", "protein_name": "DM domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPDEMPTVPCCPLDSTTGLETGAPWGIEFGPRRAIRRCARCHNHGITDQIKDQEHLCLFQACECHKCVLFSEHCSILPAESALKTMQELHLKRQLTQGLIKSGTTSPKAHSHVKKSSIQTGVLSKLPRCSADRSGIGIFVSVLDSSTLEEATNNFTFQEVTQAPCPAQQAPKTSDQDSDSASLEWQRKLEAAEALLTLRESSQAPSGPTPLLQPSAAPAPAGERGLQPPSRSLRPRPASSISLPIGHVGCISLLS", "length": 256 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AKK8-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100155397", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDVRNHSIVSEFVFLGFTNSWEIQLLLFVFSFLFYSSSMMGNLVIVFTVTLDSHLHSPMYFLLANLPAIDMVFCSITAPKMIGNIFKKHKAISFCGCITQIFFTHAAGGTEMVLLIAMAFDRYVAKCRPHHYLTIINPRICLCFLVTSWIIGLIHSMAQLFFVVDLPFCDLNVLDSFYCDLPRLLRLACTDTQELQFMVTVNSGLLSMGSFVLLIISYIFILFTIWKHASGGSSKALSTLSAHITMVVLYFGPLIFFYTWPSPTSHLDKYLAIFDAFITPFLNPVIYTLRNKEMKVAMRRLFSHLVHYRNIS", "length": 312 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AP00-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258730", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "SRHDLHCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLTGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCDHLAMVSWGVGCMAALGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSMPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTVVTSMLNPIIYSLRNKDVKAALRRTLGKKKVLAHR", "length": 322 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ARD5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258934", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLFYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AT12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLSFNRTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQFFIIHCIFMSESGILLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIFLRSYCTVFPIIFLLKRLTFCRNNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDILLIFVSYMLILRAVFHMPSQDARHKALSTCGSHVCIIILFYGPGILTTLAQRFGRHIPAHIHILLANVCVLAPPMLNPIIYGIKTKQIQEQVAHLFLKQK", "length": 313 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AUC4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MERINKSHPEEFILLGFADRPWLELPLFIILPMYFFLTNLSFLDMCYTTSIVPQMLFHLGGSEKTISYLGCAVQLYFFHTMGGTECLLLALMSFDHYVAICKPLHYTLIMNRCTCILLVATVWLSGMTYAVSEATVTLHLPLCGHNTLDHLICEIPVLIKAPCGEKGTNELTLSVVCIFMLAVPLCFILASYASIGHAVFKIKSSEGRKKAFGTCSSHLIVVFFFYGPDISMYLQPPSSISRDLPKFMALFHGVVTPTLNPFIYTLRNKDVKGAWGNLVRSVFTSK", "length": 286 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AXC2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVNEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEMLQNFVGTEQSISFIGCMVQLLIYGAFVTSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSYLIGFLNASVHVSFILPLNFCKSNKINHFFCDAPPILALSCSSIYFNVMLLAAFVGFNLTCTVLVVIFSYIFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 281 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AY25-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100155405", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLSNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSRRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDRFFCNLPLVIELACMDTYKVEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRLSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNHHVNSWKY", "length": 311 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B1Z6-1", "protein_name": "Short stature homeobox", "gene_name": "SHOX", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEELTAFVSKSFDQKSKESSGGGGGGGGKKDSITYREVLESGLARSRELGGSDSNLQDITEGSGHCPVHLFKDHVDNDKDKLKEFGTGRAAEGIYDCKDKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTASHLDACRVAPYVNMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYLMFPPPPFGLPIASLAESASAAAVVAAAAKSNSKNSSIADLRLKARKHAEALGL", "length": 292 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B9C9-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWRSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTECPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHHPNYH", "length": 402 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BB76-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100157512", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLGNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSHRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDSFFCDLPLVIELACMDTYKIEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRHSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNRHVNSWKY", "length": 311 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BC21-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152520", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYVAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BF45-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100513333", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPELQVLIFIFLFLAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEVSFISSCIPRYLYSIATGDKIITYNACFIQVCFTDLCGITEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSDQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BGE2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENNQSWIAEFILVGFQLSEEMELFFFIIFFLLYIFNLLANGMILGLICLDPRLHSPMYYFLTHLAVTDISYASSNLPNMLENLVKHKKTIPFVSCTLQMLFYLAFASVECLILVVMSYDRYVAICHPLQYTVIMNWKLCTVLAIISWACGFFLALVQVSLFLRLPFCGPQKVNHFFCEIRSVLKVTCGETWINKIFLFADGVFILVTPISLMLVSYVRILWAILKIQSKEGRKKAFSTCSSHLCVVGFYFGIAMMVYLVPDDSHQQEEQQKILFLFYTFFNPLLNPLVYSLRNAQVKAAFHRIFQKNRTM", "length": 311 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BIM6-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGKRSRRKSPGRQGRTCARTTRAGLSASVSHMERLLREGPYAQCLSSSARVFLAATIEYLTARVLELAGDEAQIVGRRCITPELVAMAVHNNALLSAFFGTLAISQVAPTQE", "length": 113 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BK27-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVTEFIFLGLSNSQELQTFLFVFFLVFYVGIVFGNLLIVLTVMIADFFRKCKVISFKGCLAQIFLLHFFGGSELVILIAMAFDRYVAICKPLRYTTIMSSNVCVGIVAAAWGTGFLHSVSQLAFAVNLTFCGPNEVDSFYCDLPRVIKLSCTDTYRLDIMVIANSGVLTVCSFVLLIISYTVILVTIQHLPSQKSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVFYSVVTPLLNPIIYTLRNKDMKTAMKRLRKWNMNSRIKP", "length": 274 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKA6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259008", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTFNCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLMGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCVHLAMVSWGVGCMVGLGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSIPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTMVTSMLNPIIYSLRNKEVKVALRRTVGKKKVLAHR", "length": 320 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKW4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258932", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILVTMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSTIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSLRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BLZ6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258167", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGGKNSTTITKFILLGFSEFPKLTAVLFSVFLRISLMTVSWNMGLIMLIRMDSHLHTPMYFFLSNLSLLDICYVSTIAPRMLSDFFKKYKFISFMGCTMQYFFSSLALTECCLLAAMAYDHYAAICNPLLYTAIMSPTLCVQMVAGSCVTGFFGSFIQLCALFQLHFCGQNVTNHFFCDLPQLLILSCSDTFFFQVMTSVLTVIFGLTSVLVIIISYGYIIATILKITSSEGRSKAFNTRASHLTAVTLFFGSGIFIYMYPNSGDSLSQNKLVSVLYTVIISMLDPLIYSLRNKEIQDSLSRWRKTIFSWCY", "length": 313 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BNL4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "TVLNARNVSTPKVFILLGFSDHPWLEMPLFIIVLAAYIRTLVGNISIIVVSRVDPNLDSPMYFFLSNLSFLDLCFTTTTIPQLLLNLWGPDKSISYGGCVTQFYMFHFWGATECIFLAVMSMDLQAICKPLRYPVIMHQQLCIFLVVMAWLSGLVNSLLQSSLTIQLPLCGNNKVDDFLCEVPVMIKMSCTDTTFNVAMLSIVGTFYSLVPLSLILVSYGFIVATVLRIQSSEGKKKAFNTCSSHTIAVSLFYGPVISMYVQPSAANSQDKNKLMSLFYSLVTPMLNPFIYTLRNKDMKGAMMRLLVSLYHQRRG", "length": 315 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BSD4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100525471", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENENSTVVAEFIFVGLTQSRNIQLLVFVLILIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNLRACYALLVALWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLMTLLCFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPAIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKRLLNQQLA", "length": 307 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A2R8VHJ9-1", "protein_name": "Predicted gene, 36245", "gene_name": "Gm36245", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTKNEEQNEDQSEGVVIPHIQDHHCLAILAFCFFFPLGYLAYRSSCKTRTYIEQKEYEKAKATSRCTFAFVLSSIAGGSIIFFCLFSRLFFM", "length": 93 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A3L7ICH5-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "LOC100756118", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYYKFSGFTHKLAGAWALESYSPQGLKPVASTEAPPIVFATPTKLTSSVTAYVYAGKNKVPELQKFFQNFFHLKRGLPDQMLYRTPMALTVGGTIYCLSALYMASQTPNK", "length": 110 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1LL21-1", "protein_name": "BTB domain-containing protein", "gene_name": "LOC112445444", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPLNSRNLQCRESGTGELQQPEAQAGPSYVSGSRKRKQSTGPSLGPESEMSHNQEEDLQQVVCTRQGKKVKIKSEYAYQTLFLNGETSDIKIRALGKVWCLHKRFLCQSDYFATMFRDSGKECHKDIIDLEINDQNINVESLQFVLGSLYRNEYVLIKPLQVPRVLATACLLQVEDLIQQCDKTMKETINVKTVCSFYVAAETYGLHSVKTGCFEWLLHNLMTHPSVELYKKLSTDLMNLVISSSNLFVMQKEIDIYTTLKQWMFLRLNPGWKGTMKQLLVNANNWFSRHKEHDGSISFLETKQGIVFQPVFKNLRFQHIICDLASTKVIEQDALIPSEWLSCVYKRQWYTLLRAQQYREIGPRDITETELEEYSMRCGKRIVRDGTYAWKWSGYNFGVHLYVVFTSHFIIFKRHAFSQPYDGSICLQPQRNIAFRLTLVYFGSSGKLSFRKTTGYKILTFEKDEEQMVMKLDSVALSFPLYIFCNFLFISLENPGN", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LLV6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIIIGTLITGYMVTCTCFLHYSCDSEEAHKATKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LUU6-1", "protein_name": "Guanylyl cyclase domain containing 1", "gene_name": "GUCD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTGPRCRRKQRPSGRPGPRGTRAPQHPTPDAGWTARRAAGAAGAEARGRDLPPQRKPAKPTAPGKGRPERGECPRRADRGGGDPEERAGGRPAWGPGAGRGGAWGRSRLPPLLPPGRWCWRPGKPARAGRALSSPVDARAAAGAGPGPWEPRAARVMRTEVDAEAAGPPLEPDEPTQSLSIQDQETAFLLEDSCQLKPGQPLPGRPWPSGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDAEFEQALQELRLTRSIWTIDLAYLMRRFGVRHRFCTQTLGVDKGYRSQSFYRKHFDTEETRVNQLFAQAKTCKVLVEKCRVSVQDIQAHLAQGHVAIVLVNSGVLRCDLCSSPPKYCCFTPSGPRCFCRSPDYQGHFIVLRGYSRAAGCVFYNNPAYADRMCSASISNFEEARTSYGTDEDILFVYADS", "length": 434 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1M0W3-1", "protein_name": "IF rod domain-containing protein", "gene_name": "LOC787600", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTCGSACFSSRSGVRSSSSCVTTQRYAPGRTFSCVSACGPRPSRCCITAAPYRGVSCYRGLTGGFSSRSVCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKSLNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEADTGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSLVEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAEAESWYRSKYEEIKATVIRHGETLRRTKEEINELNRLIQRLTAEIENAKSQNSKLEAAVTQAEQQGEAALNDARGKLAGLEKTLQKAKQDMACLLKEYQEVMSAKLGLDIEIATYRRLLEGEEQRLCEGISAVNVRVSSSRGGVVCGDLSATRTCGIGSYGVGACGSSCKKC", "length": 480 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MFB0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112441459", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELWRRLLIIVIGTLITGYMVTCTCLLHYSCDSEEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKSTWPPSLQCRVKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVTLFSRELKHFYKSYKKKQPIYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDMFKNSQNN", "length": 361 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MI36-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSSSGSKAEFIVGGKYKLVRKIRSGSFGDMYLAINITNGEEVAVKLESQKARHPQLLYESKLCKILQGEVGIPHIRWYGQQKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMMGRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASISAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRTLNHQYDYTSDWTMLKQKAAQQAASSSGQGQQAQTPTGF", "length": 325 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MQ28-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "KEQVLQPTTVVSLEGAVAEISCNHSVSDVYDFFWYLHFPGFAPRLLIKGLGPSQQGRYNMTYERFSSSLLILQVQTADAGVYYCALRYTEAGHP", "length": 94 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MT47-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112444909", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLGCEGGKRPLKPPKKQAKETDEEGKAFKHKQKEEQKTLEGLKGQIMGKVPLATGGIKESGKQ", "length": 63 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MUP8-1", "protein_name": "E3 ubiquitin-protein ligase", "gene_name": "LOC100336539", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRLTERALPTGTSNGAPSSRRAPVLTGTTVSNNDLASLFECPVCFEYVLPPITQCKSGHLVCGNCRPKLTRCPTCRVPLTSIRNLAMEKVANLVLFPCKYTSSGCGKTMPPTEKADHEEHCEFRPCRCPCPGTSCGWQGSMDAVVPHLMQHYNESIITLRGEVVVFLAVNINLAGTLEWVMLQSCFGFHFLLVLEKLEIYDGHQKFFAVVQLIGTREQAENFTYQLELNGNRRRLSWEATPLSIHEGIATALINSDCLIFDSEVAELFAENGNLSIDVTISMC", "length": 284 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q2TUK0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC121109925", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDEKGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2UEY0-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418381", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSSYTIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A494C0N9-1", "protein_name": "Protein FAM246B", "gene_name": "FAM246B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPGRPWAQARSAYRASEVLRRVTGRRRDPGPQSNGPGREDARAPGRLARLLRQLRAEAASRSEVPRLLKLVERAGAGAAGAGERTGAHSRGSVCSVCGEPRGRATYPAGVLEVSERRLQEGLAAVREELGAEIEALRAELRAELDALRALLPPPPPSPPARREPRAVPRAAPRGPTLLRTLGTVSALVAASRPADDAPDGPAECGAHRAPARKNHKKMPVPPGAPQGGGD", "length": 232 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A494C0Z2-1", "protein_name": "Speedy protein E13", "gene_name": "SPDYE13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1TRA8-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGVTVKDVNQQEVVRALAAFLRKSGKLKVPEWVDTVKLVKHKELAPYDENWFYTRAASTPRHLYLWGIAGVGSMTKTYRGHQRDRVMPSHFSRGSKSVAHRLLQAREGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH", "length": 145 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TY10-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100627324", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENYNQTSIYFILLGLFPSSRIGMFLFIIIVLIFLIALFGNFSMILLIFLDNNLHTPMYFLLSQLSLMDLTYISTIVPKMAYNFLFNDKSISFIGCGIQSFFFLTLAGAEGLLLAAMAYDRFVAICFPLHYHIRVSKRICVLMIIGSWIMGSINSFAHTAYALNIPYCQSRAINHFFCDVPAMLTLACIDTWVYESTVFVSTTIFLLVPFTCIAFSYGRILLVVHHMNSTEGKKKAYSTCSTHLTVITLYSAPFAYTYLRPKFLRTPTEDKVLAMLYTIFTPMLNPIIYSLRNKEVMGALRRVIQRICSVKM", "length": 312 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1U699-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSVSMSKFVLVGLHIWPEQQGMVFALFLGMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLAFSDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFFSCIDNLLLAVMAYDRYVAICHPLRYAIIMKEELCLCLLAGSWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLASLIKLSCSDTSLNELVIFSLGPAVFIFPLSGILVSYGCIVVSILSVHSPKGIFKALSTCGSHLSVVSLFYGTSMAVYLSSSSGQSHDKDTIASIMYTVVTPLLNPFIYSLRNRDMTLALQILFRNSNLLAK", "length": 315 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VK25-1", "protein_name": "Elongin-C", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RSYGGCEGPDASYGKLIASDKFIVKREHVLTSGAIKAMFSSPGQFAEKETDVVNFRETPSGIPSAALWKVCMYLPHKVCYTSNTSEIPEFPINSEFPIAPDIALEPLMAANLLDC", "length": 115 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A571BD55-1", "protein_name": "BTB domain containing 35, family member 26", "gene_name": "Btbd35f26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BF50-1", "protein_name": "WD repeat domain 88", "gene_name": "Wdr88", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTKDNEEILNSPDQVRKGSPDVKKKKKIKKKRVKPKGDLDSKKLDFVEDSWWKGSLKNKNLDFAEYNWVLVDNRRVSVDSRKSSADSKRGSADSKRGSADSKRGSADSKRGSADSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKNRFSPKKMDFSEDREISQPTFLRAQQSKVPWALMRALGLFKLSLPDIRRYYNLTSHDPLALDKDRQPREKSHMATVKKFWGNQQPLSKIPYKILIGHDHIVSSCHFCMNDTRFLSSSYDCSVKLWDAEDGTVIWDFEPRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRHDTFVVCCKFSPNGKFVLSALDVDRGIYLMDPENITTVIHMKDHHQRSITSCCFDPDSQKVASVSMDRCIKIWDITSRTTLFTIPKAHYNAISDCCFTSTGHFLCTSSWDKNIKIWNVHTGEFRNRGACVTLMKGHEGCVSSCCIARDSSFLISGGFDKTVAIWDVGGGYRKLALKGHEDWVTDVAISNNKKWILSASKDSSMRLWNIEEIDKIPLVSENKKAMGLKVRQVGIR", "length": 565 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG45-1", "protein_name": "BTB domain containing 35, family member 25", "gene_name": "Btbd35f25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGLQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG86-1", "protein_name": "BTB domain containing 35, family member 8", "gene_name": "Btbd35f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESRHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A5G2QG78-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100523228", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTRGENTTNITDFVLLGFSDFPQIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHTPMYFFLRNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECGLMTVMAYDRYAAICNPLLYSSTMSPSLCGRMVLGSYMAGLSASLSQVCAMLQLHFCGPNVIHHFFCDMPQLLVLSCSDTFFLQLLTLVLTVIFGILNALVIMMSYVYIVISVMKITSTKGWSKAFNTCASHLTAVTLFYTSIIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDAWKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QIN7-1", "protein_name": "ADAM metallopeptidase domain 7", "gene_name": "ADAM7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSNSHYLSALFSREFLASNYSETYYSTKGEEVTTHPQIMDHCFYQGSIIHEFDSAASISTCSGLRGFFRVNDQRYLIEPVKYSDEGEHLVFRYNPKVQHAANYSCTELNFTRTAVLKDNTKSMEDSKMESIEKEKHIELFIVADNNVYHRNPNSKVRNRVWGMVNFVNMIYKTLDIHVTLVGLETWTNGDKIEIDSNIETTLKRFSAWQEIILKKKKNFDHVVLLSGKWLYTSAQGTSYPGGMCLPYYSSSVVKDLLPDLNTIASRMAHQLGHSLGMKHDDYPCTCTLGKCVMDSGGSIPALKFSKCSRTQYQQYLKDFKPTCMFDIPFSDKLSDYPYCGNKKLDDGEECDCGPVQECTNPCCDARKCMLKPEFTCAEGECCESCQVKKAGSLCRPAKDECDFPETCTGHSPACPKDQFQVNGFPCKDAKGYCFMGNCPTRDDQCSELFDNEAKDSSDICYKMNKNGNKFGYCKNEEQTLIPCEEKDVKCGKIFCTGGKHASILGEEKVYHLKKPLTQNVTECKTFFLYHKSKDFGLVAPGTKCGEGKVCSNSECVTIEKAYNSTDCPSPCNENAVEDGDLGCQCEGVQASVDWEETLNVTNISILVVVLILVIIGVLSAVLLIRYQKCIKLKQVQRPPSEALGVENKGYTGDEQQTRTEPILPDIHPLHRRTAESLARLPTSFSSPHYITLKPASKEPRGTADPNPSAKVSLKLDIQNGCASLS", "length": 725 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QM02-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100623139", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTGGENTTNITAFVLLGFSDFPHIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHIPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYVVFSTMGLSECGLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVRVLTAVFTVIFGIINALVIMMSYVYIVISIMKITSAKGWSKAFNTCASHLTAVTLFYTSGIFVNLNSSSGGSSGLDRFAAVFYTLVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QUE5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524011", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSNVSKFLLLGLPIQQEQQGMFFALFLGVYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFASVTVPKMLMNMQAQDHSISYAGCVTQTYFFMFFACIDNLLLTVMAYDRYVAICHPLRYTIIMREELCICLLAGCWLLSCAYALTHTLLLAQLSFCVDNIIPNFFCDLAALLQLSCSDTSLNELVIYTSGAAVFIFPPSGILVSYGRIGISILRVPSTKGICKALSTCGSHLSVVSLFYGTIMALYFSPSFGQSHYKGIIASVMYTVVTPMLNPFIYSLRNRDMTLALEILIRNKNLFTT", "length": 313 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QWK6-1", "protein_name": "Calmodulin 3", "gene_name": "CALM3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VSAEREEEGVALKFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R7Y6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524140", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLVAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINHLSGTKSISFVGCATQYFLFLSLGGAECLLLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIVLISASYVFILHSVIHMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2RGH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524855", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGRRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYTVLMNRKVGQMMAVTSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYETAVYISDIVLLLLPIILISASYIFILHSVIRMHSAGSKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALRRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A668KLA6-1", "protein_name": "Predicted gene, 52955", "gene_name": "Gm52955", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMGALLANSPLLLCWLVFGAQLSVGEGILLTLTLMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKQCGVFFFALNLALFGIFAFAQCFNPLVYGLHNRDLQSKLYPSLCCQKKLLP", "length": 296 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KLA7-1", "protein_name": "Predicted gene 7582", "gene_name": "Gm7582", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMWALLANSPLLLCWLVFGAQLSVGEGILLTLTFMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKRCGVFFFALNLALFGIFAFAQCFNPLFYGLHNRDVQSKLYPFLCCRKKLLP", "length": 296 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KM50-1", "protein_name": "RIKEN cDNA A930007A09 gene", "gene_name": "A930007A09Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSLSELPQKNTDLAEMQSGPLGRCSHFFWLGVAFDAVGVAVLFTGVFANLLFYDMLLYLGSIIIFVSLLWWISWYTGNIEALPEDPLRGTSPRESGVHRSGSRRFSLTLRSVSDTFQRIRRRRRRRLHPRVVQRISSISSTDPGQLERNCDARTSGGRALFRSAKPEAVLNQFSRVQTSKSLPLGIVHTGLSICTSRSQPVFSVTSQTYPLASDSNSQMAMSSDSHVYLDSHSQEHSKISVASQIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASQIYPLEQEESQSHFLVPMPSDSFPVVPMTSQSQIQGSLAQQSHLQNLPLASQTPETDKASKSHTLAKGVPGVPPGSAQTQHPQASLAQTSQISSPVRKVPKN", "length": 636 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8C2LDI6-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "LOC100774916", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRLWCKAIFAGYKRGLCKQRGHTALLKIEGVYARAETEFYLGKRYAYVYKEKNNTVTLRCKPNKARVIWGKVTKAHGNSGMVHAKFRSNLPAKVIGHRIRVVLYPSRI", "length": 110 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LMV8-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC100755948", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTNTEGKRRGTRYMFSRPFRKSEVVPLAMYMRIYKKGDIVDIKGMDTVQKGMPHKCYHGKTGRVYNVTKHAVGIIVNKQVKGKILAKRINVQMKHIKHSKSRDSFLKQVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPQLLEPISYEFMA", "length": 160 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LSR6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "LOC100751955", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSQDEGEKENPMWELHICKLCLSICVEESRDRLTRAAKVLEQLKGETPVFSKARYTMRSFGIRSNEKIAVQCTVHGTKTEEILEKGLKVQEYELWRNNFTDTGNFGFEIQEHIDLAIKYDPSIRIHGLDFYVVLGRPGFTIADKHRTGCIGAKHRISKEEAMRWFQHKYDGIILPGK", "length": 177 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LUM6-1", "protein_name": "Tubulin alpha-1C chain-like", "gene_name": "LOC100757824", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETDTGKHIPRVVFVDLEPTAIDEVRTGTYRQLFHPEQLITGNEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSRFTSLLMEWLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYPTPLPE", "length": 288 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LZU4-1", "protein_name": "Glia maturation factor", "gene_name": "Gmfg", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSDSLAVCEVDPELKEKLRKFRFRKETDNAAIIMKVDKARQMVVLEEEIQNVSPEELRLELPERQPRFVIYSYKYLHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRATDDLTEAWLQEKLAFFG", "length": 142 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2M625-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "LOC100755487", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIQTFREHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSGGLLVSSGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALSHEDETIVVGMTNGILSVKHRKSEAKKESLSRRRRPAYRTFVKGKIYMKQRDDIMINRPAKKHLEWYDKDLKSFRISKALDRVLEPNCVIKTPEVTVSIIKELNRRGVLANALAGRDEKEITRVLNFLIRNLSQPRFAPVLINAAEIVIDIYLPVIGQSPVVDKKFIVLQGLVEKEIDYQRELLETLGMMDMLFATMSRNDSVSLSENVPAELPEKTESPCQPGDTDKNS", "length": 527 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2MXE3-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "Gpam", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDESSVTLGTIDVSYLPNSSEYSLGRCKHATEDWGDCGFKTTFFRSATLKWKESLMSRKRPFVGRCCYSCTPQSWERFFNPSIPSLGLRNVIYINETHTRHRGWLARRLSYILFVQERDVHKGMFATSVTENVLNSSRVQEAIAEVAAEMNPDGSAQQQSKAIQKVKKKARKILQEMVATVSPGMIRLTGWVLLKLFNSFFWNIQIHKGQLEMVKAATETNLPLLFLPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTLIHKLGGFFIRRRLDETPDGRKDVLYRALLHGHVVELLRQQQFLEIFLEGTRSRSGKTSCARAGLLSVVVDTLSSNTIPDILVIPVGISYDRIIEGHYNGEQLGKPKKNESLWSVARGVIRMLRKNYGYVRVDFAQPFSLKEYLESQSQKPTSAPLSLEQALLPAILPARPNDAAESEDTSSNEPRNTADEAFRRRLIANLGEHILFTASKSCAIMSTHIVACLLLYRHRQGIHLSTLVEDFFVMKEEVLARDFDLGFSGNSEDVVMHAIQLLGNCVTITHTSRKDEFFITPSTTVPSVFELNFYSNGVLHVFIMEAIIACSLYAVLNKRGSGASAGGPGSFISQEQLVRKAASLCYLLSNEGTISLPCQTFHQVCHETVGKFIQYGVLTVAEQDDQEDVSPGLAEQHWDKKLPEPLNWRSDEEDEDSDFGEEQRDCYLKVSQSKEHQQFITFLQRLLGPLLEAYSSAAIFVHNFSGPVPETEYLQKLHRYLITRTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKRKRVSVLELSGTFLPQCNRQKLLEYILSFVVL", "length": 827 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8D1BQI2-1", "protein_name": "Uncharacterized protein", "gene_name": "LCE5A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSCQQNQQQCQPPPKSLPKYSTPKFPGPCPPLVSSCCGSRSGHGRCYSSGGGGCCLSHHRRRRYHPCQPQSSNCCDSGGGQQSGGSGCSHSSGGSGCCSGGCC", "length": 103 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1VKI8-1", "protein_name": "Uncharacterized protein", "gene_name": "NCR3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARMLLLILIRVHSGSCALWVSQPPEICTQEGTPAFLPVPSTPARGDWPLALSHGTGTNWPQGRRVVVLGQGVRTGNGTPLVVERGPAQLATPTIFLLRAGFYAFGFLSVAIGSTIYYQGKCHRHMGTHCRSADGL", "length": 136 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5XVN6-1", "protein_name": "SPATA31 domain-containing protein", "gene_name": "LOC689526", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESFLLLMNSAIESWMNTSTMDIATDLSIAILCGVGLFFLLIPFLKDCPLSPASGNKTDIPKDVKRGRSNTRRKTDVEKGCRDGGKTVEETKTPSQPMKILTRQLLQDSTPQIFWNSSQKLDHLLLSQLFSSLTSLEDLILQKFNRRFWGTSSIFSESVVAMAHVLRNPSFPQQKSVRFSDPCVTDQAPSQAQGLRQQHRYHPRLHRQRKTSLVGMTWVPEKKILPISTPKQIHPCLKRRAYGVSCPTTEKGIQTSLPPECLSHKHGLYSKAVKGYVKRNHQKAIGKPPGNWLRDTLKTKAIRPASILSEHLRMFLHHKEPQTKDKATNVEKQQGTCIRSPPSKKLKQFQGRFPPNTDHYCKRRPQLSQPGQPSILNSKSYKLRKIIQSVLAGMTLMKDRADFSMQSQFSQAPQSSVCNAKRYKYSKRMGSVPRRVPLKKDTARYDMGKPIKKCLGAGTKNVPHSACSILGKRLRARNLALKKGQASVMNPTGNYCLHDSKAEMKLASNNTALPVQCRRTPYLQILEALNPIPPGVLASKLPRIVFPSSPICDFKEEYYSKAATVLKNLHHQDPGGTRVKSTSAASLESALSMCSAAKIQKTQRAPPPAASRGLSKAHTDLLKRHLSIQHSALYFEQGRIIQGTGKGSLQQNTNPQKAKHAPLKSFHEGDSRHHSWNGTMVGPGKRVPPAAAKQTKAVEVKKETPYAWSLGSNESHTGKDINISPRVFGSLGAKRSPGHLQTCTPQHSQDSTLRTQGHRNIILCSNKQPQPRPGRHDPECPSTVHPAKVNLSSEHSMSSFQNTCQKPKTAQGSCERADTKENRVLKDKIRINHLKDLCPHKERQGSIRPTAISQGGRLGRSRPCSLSSTQLKDTAKTRTSDKRQATSKSSWKSDIREVLKYGYVGSKDIIGQEDTSKKDQPPAVTERTEEDWTGEKAMCNMIAHLQYLTNFLFEIMEDTEWDPSKLQGCEVESLTFQLGSSSDSSEGDDDINQGTSTSTMSFGQTSPEMHNCSFTKTGIGDKTQSEIKAKTACDQHLNQVNRGMFSDQLPMPKEYDLSCRYRGIQHQQELGLPDQTFYQYKLRMTHCPHGGTKGHNYSFGYRKLGDQQQPDFTHKALDPHQSAKEDMGCVSCLSPKGSRPVKHRRTDCFSP", "length": 1151 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5XWP3-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "ENSRNOG00000063695", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRDMCHMTPYRLLCVLVALALSGCNVAQEVTQVQSTASRQEGEEVTLDCSYETSYVAYYLSWYKQHLSGDIIFLIHQISSSTAEERSGRYSLVFQKSLKSISLVISASQPEDSGKYFCALSDLTQC", "length": 127 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y4M0-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "LOC108350588", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQRRGGSSGAKFRISLGLQVGAVINRADSTGTKNVYIISVKEIKGRLDRLPAAGVGHMVMATVQKSRPQLRKKVHPAMVIRQQKSCGRKDGVSLYFEEDAEVIVNNKGKMKGSAITGPIAKEHADSWPRIASNAGSTA", "length": 140 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y5C9-1", "protein_name": "Ribosomal protein L32 like 2", "gene_name": "Rpl32l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALRPLMKPKIIQKRTKKFIRHQSDRYVKIKRNWRKPRGINNRVRRRFKGQILVPNIGYGNNKKTKHMLPSCFRKFLVHNVKELEVLLMCSKSYCAEIAHNVSSKNRKAILERAAQLAIRVTNPNDRLCSKENE", "length": 135 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y6V7-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "Pate4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNTEPLFDIVINCPIAPQFILKILLFPYPANTNLICNTCNRSENSECKNGTGQCTAPEGGSCSTISIYHGQRHVLSKQMCLGHCEEKPHYNGDFMIYVMCCSKNLCNSF", "length": 110 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y7P1-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "ENSRNOG00000069815", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEREKEQFCKLFLGGLSFETTGESLRNYYERWGKLTDCVVMRDPASKRSRGFGFVTFSSMARPHSIDGRVVEPKRAVAREESGDPGAHVTVKKLFVVGIKEDTEVHHFRDYFEEYGKIDTTEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSGQEMQKAQSSRSGRGGNFGFGNSRDGGGNFGPGQGSNFRRGSGGWESSDGYGSGRGFGDGYNGYGGGTGGGNFGGSPGYGEGRGGYGGGGPGYGNQDGSYRGGYDNYGGGNYGKGNYNDFGNHNQQPSNCGPMKSGNFGGSRNMGGPRDEHRSFPSWKGYNGVFGKQSPLTWIKTHSL", "length": 347 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZKP8-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)]", "gene_name": "Gpd1l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGATTLRVCIVGFWSWGSAIAKIIGTNVKNQQKFASTVKMWVSEEAVNGRKLTDIINHYHENVKYLPGHKLPENVVAVANLSEAVQDADLLVFTTPHQFIHKICNEITGRVPKKALGIIHMESIDEGPRGLMLISDIIREKIGMDVSVLMGANTAREVAAGEFCETTIGSKVIQNGILFKELLQTSNFCITVVDDADAVELCGALKHIVAMGTNFCNGLHCGNNSKAAVLRLGLVEMITFTRIFCKSQVSTTTFLESCGFANPITICYRGSDCKEAKTFPRIGKTMGNLQKEVLNGQTLQGLKTSALVYQFLKQKGLLAKFPLFVTVYRICYEGRPSTEILTCLQNHPAHM", "length": 351 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZL63-1", "protein_name": "Ankyrin repeat domain 13a", "gene_name": "Ankrd13a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSDQSRKAAAEGGSSPMVWSRPARAPPGGRADGRGPIVERTTGEGRAGDESRRARTVGFVRGDLGLPKGPAVPQNGGGRVSRRGGLVGRHGAGLGPFRKSGPPPRSVMERLAYFPVRGGSAGSSRFASCQRGRERAGRGVGAAERVPEPVPSPARDPGPPAPPAPDSEALVVRCARHLAARRSPPLALRPVGRAPETPSGGSRLVAGGRSGLGGDLLAMSSARDTSSRFPLHLLVWNNDYRQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSLIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITKIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGQDLTTECATVNNPTAITPDEYFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEERQSVEGTQAECAASDATNFEVDQSVFEIPESYHVQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPASNGGVSHAHSYEAQYERAIQESLLTNMEGRCPGGLSDSSRFDSDLRLAMELSAKELAEQELRLQEEEAELQQVLQLSLTEK", "length": 809 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZP24-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "ENSRNOG00000064315", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAVPEKEKKVAAVPGTLKKKKVPAVPETLKKKRRNFSELKVRRLRKKFALKTLRKARRKLICEKAKHYHKECRQMYLTEIRMARMARKAGNVYVSAEPTLAFVIRIRGISGVSPKVREVLQLLRLRQILNGTFVKLSKASVKMLRIVEPYIAWGYPNLKSVNELIYKRGYGKIRKKRIALTDNSLMARSLGKFGIICMEDLIHEIYTVGKHFKEANNFLWPLKLSSPRGGMKKKTTHFVEGGDAGNRETR", "length": 251 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZPV0-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "ENSRNOG00000066253", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIVQRIFRLSSVLPSAVSVHLRSNPGVTAVAFNKEPDPVQKLFVDKIREYKTKRQVSGGPVDTGPEYHQDLDREPFKLKQLYGKGEMDKFPTFKFEDPKFVVIDKPQS", "length": 108 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZRI3-1", "protein_name": "Natural killer cell cytotoxicity receptor 3 ligand 1", "gene_name": "Ncr3lg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQSCQRGPENAHMHPKGPCCSALCFLCSLGSSPHGSSLGPLRKCGRRSKPVQSSPEGSRVAEWPDGLLSLLLLLWSLLPSAGGLELEMAGTTQIVFLHEDVTIPCKILGSLHLDLSIVGVIWSLKKDGDESEVFKFYGDQLEAVRPGANVSLLGLEHGDASLYLPRFELWEAGEYQCKVVVTPEKKEGTTRLEVVAHPNMSLSEKPATARGGKEKLIICQLDGFYPEALDIKWMGSALKDSHFQEITEGVVTGPTVKNDDGTFSVTSSLALKPALEDHMYQCVVWHRSWLMPQSLNVTVFENTRDSTHGTVPPTAEVGPPVSEPRSVMIYVTIIGLCILLFSVIVCGLWKWKRLTTSNTGLCLRLDVRC", "length": 371 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZS91-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134482834", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTETEEELPTPTPKPSISEEGNFHSQYQVLGTSGQGGNGKVLLAHNRLTGTPVAVKVLRKDKQWFQPAMMEANIMRKINHPNIVSLIQVIEKETRIYLIMELVEGQELYQYIRESGHIEEDEARQIFEQILSAVSYCHGKGIVHRDLKLDNIMIDKNKKVKVIDFGLSTQFPPGKMLNHHCGTHSFGSSELLLGHRYDRPKNDMWIIGVVLYCMVVGKLTFDSVIIQDLQRQVVAGVYPAPCGVSKELEDLLSKLLRVNPNFRPTARKAMKHPWFKEHWNGLIVPYEELLPLTPDPAILDAMKSIGLQASVVKHTLKQRKYNEEMATYFFLQKQALQGDGCTAQAQQVSPVAAPFPSLDPAAAFRLEPKRSGSLPVLGTLRVSSSHGHVSHYGQNAHPKGGKRYTVAGRLRPLPMTPTQDHYHKCAVSVPCIQTTSIFSEKSSNKKIKEDNPLSHRAPLEDKPIPSRVRHRGFKGWTRNIANALIKLCCCMPRRKKPRLGQNRISPQK", "length": 509 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZT61-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134479845", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVAFFLGQGSYGSVKLAWHRRTQALVAIKTVEISKNTIRAILSEMTTLELLHHPNIISLFQILVTANQIHFILQYAPGGNLVQLISEEGPLPEEKAKKMFGQIVSAIRHCHSLDIVHRDIKPQNILIDGEGNVKLIDFGLAVKCRPGTLLSRHCGTRGFNAPELVLRQPYDGKSSDVWSLGVLLYFITTGYFPFRGNTIDEIEQKITTGTYTVPHHLSGQLENLIHQIFTVSPEMRPSIEEIENHPWIKKCELKIPPMSDPDYKIIEMLCGMGYNAKDILESLQKKRYDEPMGAYLSLKNHVSEGYDLASITPTKPGDPCPPPPPSPAHPSVFGLPLRRRASEPNFGLLHRQPSREQNPLDLILSGLNMGRCVSMPPIAVYYPKKQRSTSTRALHSRPVASPCVYNNMLGVEIILPHKQDIEMNTSSPPQTMGWFKRLRKGIGDCFSRLCCFPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZXB5-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb2l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLSSLPGRNLAMARLLLLLLSAACLHTGNSAGYQEKNDFGVDQPDVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKHYHGEFIYTSTRPFIHEHFKGRLIMNWTPGQTSGVLRILNLKENDQATYFSSVFLQTPEGMKLWQSIPGTKLIIHALDTTMRSPSIIPSVVPTDDLEYTQGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZY57-1", "protein_name": "40S ribosomal protein S26", "gene_name": "LOC134478821", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGPRRPRQEAGSKPRELQQRVLASVKRRCLFSSLGSNTTKKKRNNGRAKKGHGHVQPIRCTNCARCVPKDKAIKMFVIRNILEAAAVRGISEANVFDAYVPPKLYLKLHYCVSCAIHSKVVGNRSCEARKDQTPPPRFRPSGAAPQPPPKPM", "length": 154 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYE5-1", "protein_name": "Oligosaccharyltransferase complex subunit", "gene_name": "Ostcl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METKHSALLRTFPFLVLECPNLKLKKPPWVHMLLAMTMYALVVVSYFFITGGIIYDVSIEPPSVDSMTDEHGHQRPVAFLARRVNGQYIMEGLASSFLFTMGGLGFIILDRSNTPNIPKLSGFLLLFDFVCVLLSFFIARVFMRMKLPDCLMG", "length": 153 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYN2-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "AABR07051831.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAECCVLVCPRPMCIPPPYADLGKAARDIFNKGFGLGLVKLDVKTMSCSGGEFSISGSSNTDTGKVSGTLETKYKWCGYALTFTEKWNTNNTLGTEIAIENQICQGLKLTFDTMFSPNTGKKSGKIKSAYKRECINLGYDVDFDFDFGWLAGYQMTFDSAKSKLTRNNFAVCYRTGDFQLHTNVNNGTEFGGSIYQKVLCEDFDTSVNLAWTSGTNCTRFDIIAKYQLDPTASISAKVNNSSLIGVGYAQTLRPGVKLTPSALVYGKSFNAGGHKLGLDLELEV", "length": 284 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYX3-1", "protein_name": "Methyl-CpG binding domain protein 3 like 3", "gene_name": "Mbd3l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LGELGNAGRLTGSMIPSRLQKRRKIQVAKSKRKAKHKSGTTLRNPLRLTSCIFPQPVTVITSYPENKTRYRRDEAKLKKPQQLCALERLKNFQFGGDSKENLSCPLELANAVERIARGMQDEASNQSGDKDQLTSGQVTSDQPPYLETNEHVALQLSPSFSSQGVTLPVPLHLSPSYFLRKVTTGDIQRQAWKVKKARKRLAEALEADRLARQTENMRE", "length": 219 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZU9-1", "protein_name": "Keratin-associated protein", "gene_name": "ENSRNOG00000070302", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "SPSTCELSSSLHSDCQETCIEPSICQRSCVASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSLKSFGGFTGSLGYGNSGFGSFGFGSCGIRSQGFGCNFHRPGYFSSKSVQSSYYQPGYTSGFC", "length": 127 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZY5-1", "protein_name": "Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein", "gene_name": "ENSRNOG00000064452", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKIKAVTEESEAQGEGCSQQHRYQELLVYLNPIAQHPGFPPPDLRKIEKGKKKKKRRPTKQKQIRHGVKEVQKFVNKGKKGIMVLTGDTLRGTAIFQLCARTRICPTSIFPLTDLGAAMGSKHPTCVIMVKLHEEYHEAYDKCLEEVQTLATPL", "length": 155 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A2Z7-1", "protein_name": "Developmental pluripotency associated 1, pseudogene 1", "gene_name": "Dppa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMPPQVLISGLLLLLPAAWTTTVTSSDQLWNNHTEVVPTQSPLKISTKDLYIGTSVSAALLILLAGVLAVLKYRHRRKKILESAVVFHGFQNGVFQSTEQSQAVDVYVIEDSKVPVAH", "length": 118 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3D9-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "Snrpd3l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQVYICDTKIRFPILPNMLKNAPVLENLKNKNQGSRAGQGKAAILKAQVAARGRGHEMGPWKLPEAKTVFSIKENFPSCLLLGF", "length": 142 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3N0-1", "protein_name": "Uncharacterized protein", "gene_name": "Pramef20-ps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQTPPTLEKLAIQSLIRNEDVAMSSLGELPAVLFPALFKEAFTGKHINLVKEVVAAWPFPCLLVGALMKTPNLETLQAVLDGVDMQLTRKFHTRRTKLQVLDLRNMHHYFWNIQAGEEDSSCSAENSKEKKVVKVFHRYALRKRVKVIVELYIHSCLKEEQTCLLKWAQQRKGSLHFCCTKMKVWNLSLCGIGEILKVFDPQHITELELHTEWTLLELAHFAPYFGQMRNLQKAFLAPLHRIMFSNSNGKRDREAKCIKKFISQFSKFNCLQHLHMFCVHFLRDHMNQVLGCLMTPLTLSITYYLISQKDLDSLSRSQSLFQLKHLDLRGVVLCDLDIMPLRGLLEKVADTLETLDLQWCKMTDSQLYALLPALRHCCQLTMVNFYSNNFSVPILKDLMQHIANWSRIRVQQYPAPLECYDDLAQVSVKRFAKLSSELMYTLGVIRQTKNISFATDICHTCGQRCVYHNGSRLCCCWH", "length": 480 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3R7-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "LOC120093241", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAARKALTVVAVLGSGAGVGSILFALVTPGELQKQLMLQEMPERDSRRRDAAVRTKELVMATLKDAAATKENVAWRRNWTVRGDGRSA", "length": 89 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3T5-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "Mrpl58", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EHGGRLGPTLEPEPSWNLVAPAARALCSPDSAQTGERHRVQEHLQPGQAVPRIQGRGYRLEGPGEPRKAGRKGRFLLLLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAKASQVPKEPSKEDAQLQRLRIEKMNRERLRQKRINSTIKTSRRMTMD", "length": 211 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A478-1", "protein_name": "T-cell activation Rho GTPase-activating protein", "gene_name": "LOC134485907", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDVELVRANQTCTCKTIFFYWATGNALATFRSKEQKVQWYTFLTRSINEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHNIEDYQLWFSPGHKETPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERPRKSCMTSCFHGGSVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTNSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAAASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQSEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKTLFGRDLSKKLSIIKFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKSNTKKLEMSSAVPHEGGPTAGHNGTTSKYNVPQEKILHD", "length": 834 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A4C1-1", "protein_name": "RRM domain-containing protein", "gene_name": "ENSRNOG00000063783", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LTCCAINSDPHPDSGLKMEGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLIDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGRGGNFDGRGGYGGGGGGSRGSYVGGDGGYNGFGGDSGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDSYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGRMKRGRFGGRSSGSPYGGGYGSGGGSGGYGSRKF", "length": 350 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5E5-1", "protein_name": "Paired immunoglobulin-like type 2 receptor alpha", "gene_name": "Pilrb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQILLLLLSATCLHTGNSGGYTRKNYFGVNQPAVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLILNWTQGQTFGVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHGVICSLLISPQLSYDHEDPLHHHLCRPHSWPGEHKGPKESFTAEPGGHHWDGRGQSCSHHPPLRMDDLSVVEAKASRVTPKPQPE", "length": 230 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5T5-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "Rpl21l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRGTRYMFSRPFRNHGVIPLATYIRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRAYNVTQHAVGIIVNKQVKGKIPAKRINVRIEHTKHSKSRDGFLKRVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPELLERSPYEFMA", "length": 160 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A8T3-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RMNCSQAPGFILLGLSRDPEKWQLFFSVFLVLYLLGLSGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKILQTLWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCGVLVSGSWGVAHCVSLTHTLLLSQLYFHTNQMIPHFFCDFGPLLLLSCSDAHLNEGLMMALAGVFGISALLCIVSSYSCIFYAVARVPSAQGKRKALATCSSHLSVVLLFYSTVFTTYLKPPSSSYSSGEVVAAVMYTLVTPTLNPFIYSLRNKDVKSSLRRILNMVKSPD", "length": 310 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A969-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000067430", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFFLFWTFPGLELDKLALLSFESSSSIHPRACASTPAFQRSHNPGDAAQQEAKQREAEMRNSILTRVLDQSAWVRLSDLALVKPDKTKAVEHRVQMARYGQLSGTVSEQGFIETPEKVSQQTEEKATVKFNRREVTDSDEDDDY", "length": 144 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A9H4-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "Art3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQATARGVIKRKAFPGRQLSLSTTSCPGGKITPAESGNRFESGHHLNVLQRHKRQKRKMKMGHFELVTTLLAAMVLMDVFQVQAEVLDMAENVFDDEYLKCNSRMEMKYIPRMHGEELANDELLQSVWDKAGIQWEAQKAQLSLPKNFKDAYGIALTAYVTEAQDQSPFYHTFNRAVKIAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEESYKNVVYSTSPNISFAFGEQNQARLGNFTLAYSAKPQTANEQRLLTIQTCFGVAVGKLLNKESEGIVLIPLSEVFQVSRKGTDDDLILHSINSTCSYYECSFLGGLKAGSCTTNPENPDPGYLNNPDLDSQKLEDSGRKSLDSVKMPEIKVLQGEENPLLPDEKPEDRNRGKANVPTPGLVPVPGPKSHPSSSSGHRLLPSDTASTILLIAAAVDFIAL", "length": 433 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AA84-1", "protein_name": "Ankyrin repeat domain 10", "gene_name": "Ankrd10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAGAGAGVEAGFSSEELLSLRFPLHRACRDGDLVALCSLLPHTPRAHLAAEDSFYGWTPVHWAAHFGKVGAGTLRRHFPRGVLLGSERTPPCLESAATARSAPPAPPEGSRAHVQQSGLGVKGWGRGGAEAALAPPGVQGACAAARSPGPRGARGVMGGGAEMGSVWPAPRRTQGACAHLWLFRAGRADRMQLRRFARRPSGFGEWCGRLLLEARREPGASRSCLMETGRRAPLRHKGMDAALAAGGVRSAPAVVDGGLAARPTGPLSQLGPPCLECLIQLVRAGASLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVGNGAQTDLRNASGLTAADIAQTQGFQECTQFLLSLQNHQMSRFCPNGTLSGGHENILPNHINLGTNRKRCLEDSESLGVKKARTRVPSLDHTMPLANGDAEDDADRMHVDREFAAVSDMKNSSSVLNTLTNGSVINGHLDFPCVAQLNGMESRSDPCLTGSNGISNGQPFPSGQGPVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDIGESLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGAMQLHHGS", "length": 621 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ABF4-1", "protein_name": "Nuclear transport factor 2", "gene_name": "AABR07018058.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDKPIWEQIGSSFIQNYYPLFDNDRTQLGAIYIGASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIMAQQYQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNSS", "length": 127 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC04-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLSQNKTLKSIEEVALHVILLCQVGVGTVANFLLFIHNFSVILTNCQLTPIQVIVTNLAVASAFNLLLLAFPNNVTLFVPRKAPSDLSCKLWYFICLVARSTNLSSTCVLSTYQFVMLLPGNWSRVILKGRAPKIVNYSCYGCWIFSVLNNAYIPVKVSGPQKTQNDTDFKDKWVCSTSGFSVGMSFLRFAHDALFISIMIWTNVSMVILLNRHHHRLQHIHSSNQDHRAYADTRAAHTILMLVVTFLSFYLLDCICTFFHISFVDSRLLLRRIKEVLTASFPTISPFLLIFRGPKNPCSLLSRS", "length": 307 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC51-1", "protein_name": "Non-histone chromosomal protein HMG-17", "gene_name": "Hmgn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKADGAGDAK", "length": 90 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC66-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "Eif6-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVRASFENNCEVSCFARLTNTYSLVAIGGSENFYSVFEGELSDTIPVVHASIASCRIIGRGTSVWGTGMGYWYPTTTTDQELQHIHDSLLDSVQIRRVEEGLSALDNVTTCNDYVALVHPDLDRETEEILAGVLKVEVLTVADQVLVGSYCVFSNQGGLVYPKTSIEDQDELSSPLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDRLT", "length": 245 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ACC5-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000069094", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LPLLAFEKYVVCDGELQRLQVSCEVLGDVDPPQRLSASVVQMKQSVVEFLGTLVEQDAQGAAEDMDNALVGDNEEAEGENNSTRTNSDGPFTERPNQRLNNR", "length": 102 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AEL7-1", "protein_name": "Protein phosphatase 4 regulatory subunit 3C like 1", "gene_name": "Ppp4r3cl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDKLYRVKVYVMMEDKQWKDIGAGQISSKYIDRLQGVCLLVHSESDGSPILECKIQPNVPYQKHQGKVIIWSEAKNHGTAIHFQEPNDCQETWEVICQVQGKDPNVEITQLLTDDLESFKDMLLSWNKVEMSSCELHTLENIADLLSFVNEAPSHKKILTLVLEKEGYIKKLLQLFKTCEKHQNIDGLHYLNNIIRGILFLDNIHLFNIMFSDEFIMDVVGCLEYGPGLDEPKQHRQFLTQNVKFKNVMQITHSQLRKKIQQTYRMQYIYDIVLPTPSIFEVNLLHDLSTMIFFNKIEIITMLQEDEHFLLEVLAQLKDNTVSNERRHELLLFFKEFCAFAKTLHFQKKNTLLKTLIKLGIISALKVVVHMHDYQIQVAALELFAHLVEYSPRLIRAYAMKEAQYSEDNDGLLINIMIKQMTCDSDPEFSRSIILTTVLHAILDPENMRVTTKGHERRKFLNYFYRHCMNKLIEPILSITVENNSDDNRVNICPDNYQNAQLLGAILEILTFCVQYHSKYVKNYIISKNLLSRILILMSSKHTFLILCAVRFMRKMIGLKDKMYNLYIVEKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRQENIKSLIANIVEKFFMFFESIQYVQTFKGLKTKYEEEKKKKRERQLRKSLHNIIYQRIYCRHIKAMEVKVKADIFCRQITDKEEEREKGGGGGEGGGGRGGEGEGGREGGGREGEGGGGGKGGRGEGGAVLSMGSDIPSHYDMFVKINEMNERENVIECRKRKSSATSEYSTSCGDTSDNGISTVYCSSLVPLVDYAYDTDGEDDDGSYGNNENEEEEEEEEEEEPPKKKPYFHP", "length": 840 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AFG0-1", "protein_name": "Cytochrome b5", "gene_name": "ENSRNOG00000064959", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAKEKGKFEDMAKDVKCYTLGEIQKHQDIKNSWAMLHHRVYDLTKFLEEHLGEEEVLRERAGGHASENFEDVGCSTNVQGLSKVHIIGLFHPALITTIKLNSNWWDQLCSPTSQVVVAHTFNPSTREVGAVGFP", "length": 135 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGM4-1", "protein_name": "Proline rich 18", "gene_name": "Prr18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRLLGRVMSFSPMPPPPPPPPPPARTQGGPAARQLSRRPCGPPAASPPAPAAAAAGEKKRRPPEMLLSSSWPSATLKRPPARRGPGLGPGTPQPPTSARVPPQPSPGRGGTSATCSAPRRIACSHIPAGSTASGTSAGAGAGPEDATRFSLSLTPEAILVIQRRHLEKQLLARPRRPFPAPSADPRRPLVPCPRTRSSTLRRGGPTSVPDAPLAVAVSSRPPRASLLPGGLQATMPSPRPSSLRPVLKVSLLNEKHKYDDEEYEEEVEVVDEGLVRKCTEWLRGVESAAAARGRTGHLDSLPHLSTL", "length": 308 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGS9-1", "protein_name": "Olfactory receptor", "gene_name": "Or5aq7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVWNSTGVKEFILIGLTENPNWQVPLFLLFCIIYFIILVGNCGMIFLIWLNVQLHTPMYFFLSNLSFCDICYSTIIAPKMIINFLSEHKSTRLFACILQSFFFAVYATTEVVLLSMMAYDRYVAIANPLMYTVIMTQSICTQMILASYLTGLINSLIHTIGLLKLNFCGPNIVNHFFCDVPPLLKLACSDSHINEILLLVFSGIIAISTLIIVIVSYIHIIIAILRIRSAMGRGKAFSTCASHLTAVALFYGSLTFSYIQPSSQYSMEQEKVSAVFYTLVIPMLNPLIYSLRNKDVKEAAQKLMLGKRNAC", "length": 312 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AIA3-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065493", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIFVPFFPHPGSIRKDGVVYAHTMENSSNSPRETREPAPLRRTWRGCFQRALPRVSKFFRRGRGSTGGWDNGSPRQGPMHSDQDLRHLRSLLSKESCPVMSK", "length": 102 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AK52-1", "protein_name": "Olfactory receptor", "gene_name": "Or9s14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIEVHRNGSLSAMSLQGFVLLGFRGGAETQALLFTVFLVLYVVTVLGNLTMIMVITLDARLHSPMYFFLKNLSFVDLCLSTVVVPNALASIFFSSKTISFAGCATQFFFFSLLAATEAVLLAVMAYDRFMAICSPLRYPVTMCPMTCVRLVLGTFCVACLNSIVQTSLTFRLPFCSSNRIDHFYCDVPPLLQLACASTALNELVMFGICGFIIVCAVFVVIISYVYITVTILRMHSGSGRHKLFSTCGSHMTAVSLFYGTGFAVYGQPGGVASMEQGKVVSIIYILIIPMLNPLIYSLRNKDVKDALRRLGQRHSLAKESG", "length": 322 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMC4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "ENSRNOG00000068014", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCVFKNAWGHRNMCSMALCSQFGTHLHVSLTDAHSLSCNLIIRSPTKAEPLRYEGHCSMDEIVFLSFNNVNKTMPLGNQEKMANATKVQKCLTQWIDLLGQDLRDKVSEIKVHTTKTSGHPTLRVTMLSKHRHGEIIGASWEFNISENYSFILDLKTMKWKPQDIMKEWKDDETLMKHLNLSIVECSQKFNEFLNQHEERTSRYYLDSALPPAPPPLFKGFTILLWHSYTPAISPTSSDTHSSFINFRDGLIDINFPL", "length": 258 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMN7-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "ENSRNOG00000070681", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPGYITLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLACAEKKAAGKGDVSTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVLYCIIKGKARLGRLVHRKTCTTVVFTQVNSEDKGALAKLVGAIRTNYNDRYNEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMX9-1", "protein_name": "Ribosomal biogenesis factor", "gene_name": "Rbis", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKNKLKGQKSRNVFHIASHKPLKAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELHHEKEPANVDEATRLMAQL", "length": 96 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ARJ3-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "Or8b101l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTLGNVSSVKEFILLGLTQQPELQLPLFFLFLGIYVVSVVGNLGLIVLIVLNPHLHTPMYYFLFNLSFTDLCYSTVITPRMLVGFVKQNIISHAECMTQLFSFCFFVIDECYILTAMAYDRYAAICKPLLYQVTMSHQICLLMTVGVYMMGFVGAMAHTGSMLSLTFCEGNIINHYMCDIPPLQKLSCTSTSINELVVFTVVGVNVIIPTLTLFVSYTLILSNILSIHSAEGRSKAFSTCGSYIIAVSIFFGAVLFMYFKPSSASVDGDKVSTIFYTILGPMLNPFIYSIRNKDVHVALRRTLKKRIFT", "length": 309 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ATM0-1", "protein_name": "ELAV-like protein", "gene_name": "Elavl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDAGAGSCRYKGLGAAAVRPRARSAQRGPVGGREGGREERTHYPAPDRPDRGPAAEGRAAEISVGKSDFCGPRGAALRAPSTARPLPPSTCRQGSGRRSAHPQARVSSRPSRAPPPPSSPLRRPQSQTPGRDPGVSTRRPPRSARPPEPPSIRTAPAGHTRMVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA", "length": 522 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AUS4-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "ENSRNOG00000062467", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTAAGKTLAVVAVLGAGAGVGSILFALVTPGELQKQSMLQEMPERDSRRRNEAVRTKELVIATLKDAAATKGNVAWRRTGQLEGQGRMCGTKGTNKCSLPIKWISQLDI", "length": 110 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AWY6-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065059", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKATKKSKNTTSDVEPSTSSAKSKKAKTCYQYQTRAGEKKSRWSGSDCSVNVQKTTKKAKRTLPRIAENNTSEKTVPPTKKTKRAKDEQLFGHYHRLMDEISTSTERGPEQSSTDSSSASTSDEESQ", "length": 128 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B5G4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "Ptp4a1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCKATHDTTLVEKESIHVLEWHFDDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAVRCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGAFNGQQRLPLEKYHPKMWLRFKDSNSHRNNCCIQ", "length": 173 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B646-1", "protein_name": "Ankyrin repeat domain 66", "gene_name": "Ankrd66", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSREARLHHQTPGDQEAGAACLLSWGGGGASFHGVNTLTLRPAMMACSTELLKDTDSVMELSKLSDMTKLHQAVAAGDYNSVKKILKKGLCDPNYKDVDWNDRTPLHWAAIRGQMEVIHLLIQYGARPCLVTDVGWTAAHFAAESGHLNVLKTLHALHAAIDAADFFGDTPKRIAQIYGQKDCVDFLDTAEPECRDHRQRGLLFDERDPDWDLKKRELELSLPVPDQNTNKKKKRIRGSTRVNHSKAWRI", "length": 251 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G1V0-1", "protein_name": "Ankyrin repeat domain 62 like", "gene_name": "Ankrd62l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRVAGLSSKKSRWLLQSLLDQQRHSLGTGFESANILLSPKYHLKDKDLRKIHKAARDGDAARVQQLLLGKHCVNDKDKKKRTALHIACAYGHPKVVMALVEGKCEVNATDSEECTSLVKAVQCQEEECATILLENNADPNIVDAQGNSALHYAVYYKNTSLAAKLLDHEVNIEATNKDGFTPFLLAVSENKLKIAKFLLMKNASIHAADNQKRTALMHAVSHDSTNLVRFVLEQGVDLFVKDAFGLTAIDYAADFKYNSNMEILLEYKAKRYEESERANLVEKSSEEDSSRRKDQQSQELENMEKEELTEPGNGTEEQEPDGGVTSVEEPRRLDDRGDDQPQEAVTAPRTREKEQELPFTDMCTVVTGKEDEDESSWDSESVSENLPLIRIGVDGLLLVNGQAVENPEKYLHWLHNRKGEESVPNETKGVGDLQAFTPAEPGLELTSEEKHEELSRNEDCQPQVEEERTQEWSGWGAPEALCAAALDHGDIGSPLTRENGHPRARQSPSVDSEEQDGGSGLNIKEEKTRDHEEWSGDFLMDRTSKESEPAAGDLLQVKDSWSLNDTDPNKGSPAKRKSKEKHKVRGEMNAMEDADDFTPLSESCSDNKAELCCNTHQAETETESCELLTRQTGNMEGGVAGEVLKTEPARSREALKETEETGEGARVKMQLPGKDELYSEDAERQQYDMALSALHLKTKQTVRQLQETQDRQREVVRSSQRMQDHLQKLQAGCSEAEAMVQEQGKKTAELQKLHAGMIHELKEKWETIASKYLPLNIQLKYLEQELLSIKIAQKQYEKLHEDQRTLQRDAVDLQHQVQENMAKLDDEKQAMALRDSNNDSLMSQVELRIKNLESNLQKLQAEKESNERNVEKYLQRYIRERELSKTLSHTLHRTNSKLSRVRTDILLVTERNRTVQNTLTTRPVPKSPGVTEHSAYVNRNPNFIASRNLEAAMSSPQPSPELMRRRLLKKQKNMVKNITEEVDKAAAELESWSLEAYPSGSK", "length": 1003 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G430-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "LOC689816", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLETCRNLSAIGYIWEDNSTEEYCKSSRRHGRPTSVTMKVNLCSFSGYKIYSGHERLYARTDGKFSSFLMPNVSPHSFPKGTLGKLTGLSSTEENTRKDSRKKFKRKEPTLQKFQRAITGASLADIMAKRNQKPEVRKAQQEQAIRDAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR", "length": 193 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G808-1", "protein_name": "Paired immunoglobulin-like type 2 receptor beta", "gene_name": "Pilrb2l7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARILLLLLSAACLHTGNSAGYPKKYDYGVDQPAVLSGVQSGSIEIPFSFYFPWELAKDPQMRIAWRWKVFHGEFIYNSTQPFIHEHFKGRLIMNWTQGQTSGVLRILNLKENDQATYFSRVFLRTTEGMKSWQSIPGTQLIIHALITTPGSPSIIPSAVPTTGLEDTRGQRTPSLLNLGAMVGMVVSKVVVIIPLYGWVIFLWWKQRTQFRRDLVSEHPWKNFVPILPAESSSFL", "length": 236 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GB91-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c117b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TNRYYFNIFMIIMQNQSFVTEFILLGLSQNPNVENILCVVFLFIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDACTSSTVTPKMIVDFFYERKTISFECCMTQLFAIHFFTGIEVIILSAMAYDRYVAICKPLHYSSIMTQRLCGILVIVSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYLCDLFPLLKLACTEPHIFVILVFSNSGSISIIIFSILLVSYGIILFSLRAHSSEGRRKALSTCGSHITVVLLFFVPCFLIYARPTSAFSSEKNAFVFATIITPLLNPMVYTFRNKEMKNAIRKMWKRLIMVSCNY", "length": 323 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GF85-1", "protein_name": "Ceramide-1-phosphate transfer protein", "gene_name": "ENSRNOG00000064148", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "HFFLEYLNNLKIMLIFLSPPTGGWASDHHSPTTGTHLRFLNSLGAAFSFISKEVVSKLQIMEHPRSSPQSEHCSSLQSMAAYEVSNKLLDLARRSGPLHSNSGCRTVLCLHRALHWLQLFLEGLRTSSEDARTSTLCTEAYSAMLCAYHSWIRQAVTVAFCALPSGKVFLEMLGEALPFMEQMCDISQFYVEHFLLDLP", "length": 199 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GFV7-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f21c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLTMYLATVLGNLLIILAISTDARLHTPMYFFIMILSFTDVCFSSTTVPKVLANYMLRSQTISFSGCLTHLYFLCVFADMDNFLLAVMAYDRFVAICHPLHYTTKMTNKFCVLLIVGSWVLTNLNALLHTLLMAQLSFCGDNIIPHFFCDATPLLKLSCSDTHLNDLMILTEGTMIVVTPFFCILISYIHITCAVLRVSSPRGGWKAFSTCVSHLAVVCLFYGTIISLYFNPSSSHFAGKDMAGAIMYTVVTPMLNPFIYSLRNRNMKGVLRKVLILRFPSKQ", "length": 313 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GGC1-1", "protein_name": "Histocompatibility 60b like 1", "gene_name": "H60bl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKGATSKCNHSLTLSLLVLLNSLGTMQVDGTDSLSCNFTVQYKVSLGQCSVNGMTVLCFDDVRQNSPVCKTEKKGNATKLCNDLNQCLSYSFYEMMKLESGLFESKGNHTLRVTVQSQYNQGEFMDGCWAFMIDRQYPFYFYPKNMTWRENQPNAIKTMSQWENNRELFQSLKFLSTGDFSLCLKKLLTDSRELTRSTIKAPDTTQPTSTTQSPSTGNSTPAMSSNQSPSTGNSTQPTSTTDYLIVFEFTAIFLALIVVSMEKKKVLPAAPLPLQYELQSPSPAVLEES", "length": 290 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GIM2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x11c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLFNVTEFIFLGLSPNKEVQRVCFVLFLLLYMAIVLGNLLMVVTVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLILDLLAEMKSISVWGCMTQLFFLHYFGGIEIFLLTVMAYDRYVAICKPLHYTSIMNRKVCIVLVGTAWTGGFVHSFAQIVLIFPLPFCGPNTIDHYFCDVLPLLKLACSDTFLIGLLIVANAGTLSVIIFVVLLASYVVILFHLRTLSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRRSDTLPVDKMIAVFYTVITPLLNPLIYSLRSAEVKKAMKNLWFRTMKADEK", "length": 309 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJN1-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1-ps20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LSQSPPRNRTEQLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNFGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYGGGGQYFANPRNQGGYGGSSSSSSYGSGRRF", "length": 319 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJR0-1", "protein_name": "Aspartate aminotransferase", "gene_name": "Got2-ps6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLHSRMATTFHPGLAAAASARASSWWTHVEMGPPDPILGVAEAFKRDTNSKKMNLGVCAYRDDNGKPYMIPSIRRQRPRLLEKIWTKNAYPSGDWLVFVRLLQRSEPVFCKDILSLAKMSFYPNHPGETTRPSSGMPACSYKVIDTMTHKTCGFDFSGALEDISRIPEQSVLLLHACAHNPMGVDPRPEKWKEMVSVVKKKSLFAFFDMAYQGFASGDGDKDAWAVQHFIEQGINVCLCQSYAKNMGLYGERVGSFTVVCKDEEEAKRVESQLKILIRPLYSSPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISKRTQLISNLKKEGLFHNWQHITDQIGMFFYMIKDGRISVAGVTSGNVCYLTHAIHQVTK", "length": 379 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GL73-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC134481331", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLVSLPEQNLAMARILLLFLSAACLHTGNSSGYRRVNDFGVNQPAVLSGVQSGSIEIPFSFYFPWELANDRSMSIAWIWKYFHGEVIYNSTQPFLHEHFKGRLIMNWTQGQTSGVLRILNLKENDQARYFSRVFLRTTEGMKSWQSIPGTQLIIHALNTTMGSPSIIPSAVPTAGLEDKRGQRNPSLLNLGVMVGMVLAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GLF3-1", "protein_name": "Heat shock protein 90 alpha family class B member 1, pseudogene 13", "gene_name": "Hsp90ab1-ps13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESQTDPSKLDSGKELKIDIIPNPQERMLTLVDTGIGMTKADLINNLGTIAKSEDQTEYLEERRVKEVVEKHLQFIGYPITLYLEKEREKEISADEAEEEKREKEEEDKEDEEKPKIEDVGSDEEDESSKDKKKKTKTIKEKSIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNAWEDHLAMTSLSGYVSRMKETQKPIYYISGESKEQVANSAFVERVWKRGFEVVNMTEPIDDYCVQQLKEFNGKSLVSVTKEGLELPEDEEEKKKMEESQTKFENLCKLMKEILDKKVEKVTIPSRLVSSPCCIVTSTCGWTANMERIMKARALRDNSTMEYVMAKKHLDINPDHPMVETLRQKAEADTNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNCIYCMIKLGLGIDEDEVTAEELSAAVREEIPPWRVMRMPLAWKKWIKGSWEAPALCIVSLGLPQQP", "length": 518 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GM54-1", "protein_name": "MAGE domain-containing protein", "gene_name": "Mageb11l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPHDQKSKLHSRENSYQAGGGAQAYGDAEEIAEAAAEAAEESSAKSQSQPGAEYSRNHRAPPKAKPSAKLILSSSSSESDESSHEESEPSVQKDRPFLHQDLIERRVAILLQYLLHNYNLKQLTTKEEMLKVITKKYEKDFPEILRKASEKLEDAFAVEVREVSSSQPSYDLISKLKLPNNGRIRAGKGLPKTGFLMSILGIIFIQGNSASEEDIWKILKKKRIYPGKKHRVFGEPRKLMTQYLVKLKYLEYRQVAHSDPPRYEFLWGPQAHAETSKMKVLEYLAKINKTTPHAISALYQEALKDEKERAEVRDEDNTDTTDQSTEGSPEKSPTASTTPVDT", "length": 342 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8J8YII4-1", "protein_name": "Coiled-coil domain containing 188", "gene_name": "Ccdc188", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGPEPLGPCGHSHTQHPPAPVSNNHGGCLNQPCQGFVRWPCLVPLQSTQSLESSRPFPAPGTGSGGPRMRGEAPGMFLSSEGEIPRQRAREPAGARQEEVEVEWDWPLHPGHEQGPPRQTAPPTSGPRPCPCPTLPPRGRATASSRQAPTQLQGGTLESAQQSFLQLEQENHSLKRQNQDLREQLGALLGPGQQFLPLCSEHSSCTALAWVSGNTRSRTHAAAPPAVHSLGPDPGALPQSPESARTRLLEDRAPVQLLRQQELCPGKESFVRQSQSELQQIRLSFERKKMAITEVWDGVAEVHMALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKQQQMMEAAGLEAAAGCSAGLHSGLRVRGGPHTLRGAGATPAEPSQRLEAQGLTGSLLTPGGGRLPAFLEQKPSGPSKEARWLVLPQGLRGLTGPCLQHCGTWPLPEAAEKGGGRASPEGWACSWIYSHDTLCM", "length": 481 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9PVG7-1", "protein_name": "5-hydroxytryptamine receptor 7", "gene_name": "htr7a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLGDTNRTIIAKSHGETMKSLMAEERARETGASVETFNGIMISEVLVPRLFKIAHESGEVAVAAGSGSMDMKPSSSPILLEMMEVANGTRCAEQILSYGEVEKVLIGGVLTMLTLITICGNMLVVISVCFVKKLRQPSNYLIVSLALADLSVALAVMPFVSITDLIGGRWIFGKFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGWCMAKMVLSVWLLSASITLPPLFGWAQNVNDDRVCLISQDFGYTIYSTAVAFYIPMTVMLVMYYRIFRAAKLSAAKHTITGFPRVEQEEVEEDEVEEDGGDGAEEPTGVDCVTVAIKLQREVEECARLPRILRGVGRRCSDRRSISIFKREQKAAATLGIVVGAFTICWLPFFLLSTARPFICGTECSCIPLWVERTLLWLGYANSLINPFIYAFFNRDLRTTYRSLLSCRYRNINRRLSAAGMHEALRLVERPEVVVSG", "length": 479 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QGZ8-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pimr118", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLFTVLGVIALFLRERDTNNTEEEVQNDVPPVRNSDGQEIDDWCKEPSLLEPVSVHSEEPSLEEPVSAHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLKEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPSLDLSFFSAESSWSEDLSSSFLTVESSWSDDLSSGFLTAESGCGDDEPLFVDSAEPEKLKEDKETQIIEINSHCYAIEAQLGEGGCGAVFSATRLEDGLQVAVKLSDFEEEKRFISVDGFEDPLPLEIALHFLANKGPKVKEIIELLDWKVEADRYFMVLEQPIPCMSLHEFLLDCEGIIPENKLRTIMYQTTVAAQTCCQRGVLHRDIKLENLLINPDTLEVKLIDFGCGDLLTEDSFQYFRGTREYFPPEFSSTGRYHGEPATVWSLGVVLFLLVFYRFPEQSDLPRMNNRRLRIKGLSRDCCDFFHGCLQLDPKDRLELQNLSSHKWIRTRTRRNDENCPNLTDGSSHSNHPITSN", "length": 567 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0WZU8-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6B2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMVVNLILGWWLVAVSRAQKLPRPSLSLHPSQGASLGDNVTLRCHLPQPAAWVRLYRYQNPTYIEQKDNVQDMAEFSLTSIKQEDAVIYQCQYQGLAPAGTSQKSDPMELLVTDHRYPPPGISLSPKEHVEMGSNITIQCWNKDYGASFLLHKGGHSAPIQHQEPDYWGTATFTLFGVTPADSGTYRCSYRIGGCCLLFSPLGDNVTLEVIPRPAPPGVNGGPSRNLVAAVAGGCAAAIVIITVSFLLVALRRQMQRAERPGATPRSPEAVQFQVSPGDSEGLTYAQLQAVTPSTHPPTSSTTPEPPIIYAEVGTRGPR", "length": 321 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEA0-1", "protein_name": "C-type lectin like 8, MHCY region", "gene_name": "YLEC8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 276 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XED4-1", "protein_name": "C-type lectin like 18, MHCY region", "gene_name": "YLEC50", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYLSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKAHPQ", "length": 276 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEJ6-1", "protein_name": "Sulfotransferase", "gene_name": "LOC769841", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVCRAAAPNSHPSTMPVHYVTYKGIKFPPAYNSVHSLSFAHNEFLVRDDDVFNITYPKSGTVWMTEILSLIRSHGHPSWNQTVLNSDRMPWFSTRLGLEAALSYPSPRLLTCHLPRHIFPKSFSHSTAKVIYTLRDPRDVVVSYFYFCKMCNSYEDPVSFEQFLRDFLSGELPHGSWFEHVRGWMQMKDRENFFFITYEELKQDLQGSVRRLCHFLGQNLDDDAISSVVQNASFMAMRQNPMCSSILLPADIMDQTKGQFLRKGICGDWKNHFTVAQTETFNRIYLEKMRGLNVAFPWDRDQDPDLTEQ", "length": 309 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGU1-1", "protein_name": "C-type lectin domain-containing protein", "gene_name": "YLEC62", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTGSDPQLPEEDVHISVLESNTSTPAMGEGDQQETFLEHKAVTEPLGQSGEKPQWGSRCHGTGRRRSRVQLIAVHAAVGALILMLVVLVISTVCRRASIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCNAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 277 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGW1-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "NHLRC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPAVLWRLQRLSAAERLEARLSGAVRKEPGRGEARQSEKKPHSPHCPLRCSYACPGRTPMTSESGRKALSHLGRQQQCLNKMAELRARLEAFPAPECLFKTLNPFMGFLRLFFAPQPLGGEQALFRAAQCAEASPRIPAPQAWAGRSRGCHGNAARPASMGRKQAVGPRLVMAGALLTLLGLLWGSQMLKAFDYFSSWKGDGEQQMYKLDISWPKIPEYFSGQTFCVAVDSLHGLVYVGQRGDDIPKVLVFSVEGYFLYSWNDTVEMPHGIFVLNTATDSSVWITDVGSGKYGHTVKQYSPSGKLLQVLGTPGNAGSSLNPLQFDQPAEIFVEESGEMYIVDGDGGMNNRLLKLSQDYKEIWLSGENGTGIGQFKIPHSVTVDPFGRVWVADRDNRRIQVFDKVTGEWLGAWSSCFLEDGPYSVRFTGNYKYLIVAHLNINRLAILAAPPVGEIGDCAIVSTIQLADETKPHLVDVDVKSGAIYIAEIGAQQVQRFVPLS", "length": 502 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPN1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR2A13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMAVALILGWWLVAASRAQQLPRPSLSLHPSQGVSLGDNVTLRCHLPRPAAWVWLYLEGRWSYAKYIDKKQDTTEFSFLSASHDQAGTYLCQYQVSESEDVSVTSDPVKLVLTDRSFPPPHISLHPEERVGTGTNVTICCWNKDYGATFLLHKDGRSDPIQRLVPDDVGAVSFTLFGVTPADSGTYRCSYHPKNYPFLSSPLGDSVTLEVTPTPAPPGAELVSRGNLVVAVVRGCAAALIFGLGVFFVIDARSLWIRRDESLGGEGI", "length": 269 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPP6-1", "protein_name": "SUN domain-containing protein", "gene_name": "LOC776146", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDETGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XQE0-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6A8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPMAVNLILGWWLVAGSRAQQLPRPSLSLHPSRGVSLGNLVTLRCHLPRLAAWVWLYRGGGWSYKKGKKKEQDAAEFSFASTLREHAGRYRCQYRVYESAEVSVESDPVELVLTDVRYPPSSISLQPEQHVGTGTSVTIHCWNKDYGATFFLHKDGSSDPLQRQDSSGGGTATFTLFGVTPADSGTYRCSYRHWRYAFMSSPLGDSVMLEVTPTPAPPGAELVSRGNLVVAVVRGCAAVLIFALGVFFVIDARSLWIGRDESLGGKGI", "length": 269 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XTD2-1", "protein_name": "Coiled-coil domain containing 97", "gene_name": "CCDC97", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEDPKEAEGPTASKWIPIASNGNPTASKWIPIASNGDPTAPKWVPISSNGDPNWVPISSNRDPMASKWIPVSSDRDPTVTKENPPSSNETPAAEWDPKVPPEGRPVEEGDPKASPTEDPPAEPDPKASNCAPLSSHWAPEAAVWDPTSPHRDPTAEPQCSASPEQHRAAQRDPASPMEEDRYPATHGVRPATRADPAPYGDHPEAEEDPLPAAVEAMLAAVAASPVRVRSQQQGDPELTAAERRRDLRALFLRKPLVFLERFHGALQAEHLPCFAHLPPRYEVAFYCRQVRARRQQNPQTGLSRWPRRPGARTRLRNRRYAALRQLIAGGEYFSEEEMRAREPLLYEHYIGQYRDAETPPGTPPCPPHPGTPPGTTWAAALLRSVEEAAVQQRLQRQRLREGDSGEEDEDEDEAEEPHIPDAGELEVLREEFRSRMYQRFLDGEDRDFDYSQVDENPDMDNLDIESRDAEERYFDEEEPSAAPQLE", "length": 487 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Y889-1", "protein_name": "Transmembrane protein 65", "gene_name": "TMEM65", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWLGRAVLLLGRPGGPAAPSSSSRLCSLRGPPRCCCRRRLSSLRGGADGLLPARGAPPGRALGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLRELHRFESIAIAQDPIAARASCQQYGETWAHQEPSGACSSVHSQAYHQKEAVPSSNCPSTKYDRTHYLWPPLMAEAAGKPGRCPHCCAEGWSSEKLEVAPPSPGQLRHVFFHNALPFVGFGFLDNAIMIAAGTQIELSIGVVLGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQADMWQTRLSAHLGKAIGVTVGCILGMFPLLFFGDEEEKLEEKN", "length": 328 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YA34-1", "protein_name": "SWIM-type domain-containing protein", "gene_name": "LOC100859602", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAERGQLPPYAKRLCCRPGYGSGCRLGQQAGDTGPGSGTFCAGPSSAAAAAAAAAAATAASLVLLPLGKTQSPESLLDIAARKVAEKWPFQRVEEQFERIPEPVQRRIVYWSFPRSEREICMYSSFDTGAEGFTAPGSAAGNTASGGAVDAVADENRLPFRRGMALLDGGCVDNVLQVGFHLSGTVTEPAMQSEPETVFNVAISFDRCKITSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVLPTAQKLADEILSQNSEISQVHGAPDPTAGASIDDENCWHLDEEQVQEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITDQFMADPRLLLWRQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKTSWLKQLKKWNCVDVCPWEDGNHGNELPNLTNALPQGANANQDSSNRPHRTVFTRAIEACDLHWQDSHLLHIISSDLYTNYCYHDDTESSLFDSHGWPLWHEHVPTACARVDALRSHGYSREALRLAIAIVNTLRRQQQKQLEMFQARKKELLYRGITSITNLEGWVGHPLDPIGTLFSSLMEACRVDDDNFHGFSDFMENTSQHKSLEYQHLPAHKFLEEGESYLMLAVEVALIGLGQQRIMPDGLYAQEKVCRNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEVIHRESVPMHTFAKYLFTSLLPHDAELAYKITLRAMRLLVLESTAPSGDMSHPHHIASIVPNRYPRWFNLSHIESQQCELASTMLSAAKGDVQRLETVLQSIQKNIHSSSHIFKLAQDAFKIATLTDSLPDITLLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATELGVHALDSIMQNWFTLFTPTEATSIVATTVMSNSTIVRLHLDCLQQEKLAGSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYSQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVGLQGRRNSVKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYGEFIEFLSKARETFLMSHDGQIQFTQFINNLKQIYKGKKKLMMLVRERFG", "length": 1168 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YDY5-1", "protein_name": "SKA complex subunit 1", "gene_name": "SKA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAEGLEALSRHLAAKIGLIKRLLQLRGLGRREMLAEVGMEVAVLHGLLGRMEEEVNQRRQLAAALQEMRKRAEKEKWEAERLQLVKKAAKEAPLVNDAPLISDEEFESVPGYMRGRLTLAQTNAALRALHAAAASKYRLLRHPPKSLPSSSRALCHRFREEETKETQGLTFVVEADLKEFTQLKVDRTFHRIVGVLRHCRRLREVRGARLVRYVLP", "length": 217 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z0M2-1", "protein_name": "Tumor necrosis factor ligand superfamily member 10", "gene_name": "TNFSF10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPAGGPSPAHTCGAVLVAAVLLQSVCVAVTYIYFTNELKQFANADLVHSCERGHPLSPPPPPDVPQTAVTRPTKAEGGAAPVGASCSIGQSRRAQSDLRQRAANAASPQHGPPCAARSRARCSCPRCTAGPRVCRRTQQKLWDTYSRSGTACLTGEELGDLIQNLDVVESKDRVADPCWQVKWHLGKLIKKMMSRILQENMSAINGDRTQALPRRDEPPQGPTLRIAAHLTGSSKRSSASPHIDYLSYRGIGHKIHSWESSRRGHSFLYNVELWNGELVVPQTGFYYIYSQTYFRFRENEDEDSGLLERIKNPKQLVQYIYKLTNYPDPILLMKSARTSCWSKKAEYGLYSIYQGGVFQLKREDRIFVSVSNSDIVDMDKEASFFGAFMIS", "length": 392 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZCD9-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418390", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMSALLFTLLHYWKIWFCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEREEQQEQVEEEEQLERVEELEQEDQVEHVEQEEQEEREDQGEQVQQEEQVEEVEQEDEEEEYFHHSALTRYIARRAWEKMQGKATKCVLVEELMSDLLQTYTFVCSNSFYPVLQPAIGVGSAFEGWSPCEEDIVYRLLVPIKAPHGHVFHPELGEEGEVLARNSRIRVELVCMCTREQQLGDVLCFLHHSEEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRTWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKVLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRVLRDFKELKDRLFRLLLFGR", "length": 542 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZD85-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418382", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAIFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZE07-1", "protein_name": "LIM domain only 1", "gene_name": "LIMO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRDSNPMGWYGSHPVTAAWEAEARTTSLGQPGVRAAELP", "length": 158 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZGC1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "LOC124416945", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVAGSPALLLLLSLGLCFTGAQGQGNTMAVSFLNRSMKHPKEGQRLGLECHTYKTSWGVSWIRLDKDGNLHFIVYISKFSSTTFPGNKGASSQFEVSKQGSSYRLTVKNFRAQDQGIYFCIANINQVLHFSSGQRAFFPVTTTTAAPTTLRAVTLTATTQSSQVTMKDISQHSPDPGRSKENMPNFCCKLVMWVNLACACLLLLTAITITTTHCQRPSSP", "length": 220 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZPB4-1", "protein_name": "trypsin", "gene_name": "LOC107049069", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKFLVLVAFVGVAVAFPIRDEDDDKIVGGYSCARSAAPYQVSLNSGCHFCGGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSGYNANTLNNDTMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGFGCAQKGYPGVYTKVCNYVSWIKTTMSSN", "length": 248 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A1Z3-1", "protein_name": "Bridging integrator 2", "gene_name": "BIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSLYHPNAIPVPFPSHPCTTLMSSLTHHIIPVPSSCLPNVIPIPYHPHVISTLSLLHPHFIPMAFLNLPHAIPVPPLIHSCAVPMSYHPFPISFSFPSPSHPSIAPMQSPSYPYPTPVPPPFHLLPIPIPTPVPPPCHSCSIPIQPRCRLHAILVPFPPHCHPHPVPAPSPPHPSAIPMPSHFHPHPIPVPPHTISIPSPPQCHLHAIPVPSPTHPHPIPSHPRFPHPLWAQGHPHPRGSNLSPPIPPPPPNTFALQNEGNKLYKDLKAFVGAVKVMHESSRKVAETLQEIYSTEWDGHVELKAIADSNDLLWDDYEAKLGDQALRLMENYLAQFGDIKERIAKRGRKLVDYDSARHHLEALQNAKKKDEAKIAKAEEEFNRAQAVFEELNRELREELPVLYGSRIACYVTIFQNISNLRDIFYKEMSKLNRDLYEVMGKLDKQHSSKVFIIKGVPSKRRSLLISAPVSPPAAYPCPGKAPNWDPSSGAEQTPTSPRVGSDATEDVPNGLAAPGPAEPGAPMPGPPPASPTSVRSASESESECSEESREIDLSPKEMEVSVGSGCPEYPKTEGAAKGEVEGIAASMASMIVSEAIAAATGAAPGDSDGVGGGDSTDSEISPAEGAWGGPSPGGSEERVEGTDVSPEVGSDAGPCEHGTPEPPQQDVSCDPPQDPSESLTPL", "length": 682 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A7J1-1", "protein_name": "Mitochondrial transcription termination factor 4", "gene_name": "MTERF4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGRLLGLLRARAPRAVLPAPGPASRHRCGTAGPEEGEAAELLAMGFSQAQARRLRLLRPGLEPQRRAEAAAQLLLLGLSAEAALGLLERSPGLLRMETARLKERAEYLRRLGLEGERGGPLPRGVHAAPAEDGGGGAAAAGAVSVHGRAADRAAAELPRGAAGGAGPRAAPLPGAGRRAGRSGGVAGAARPALSSARLHAQYAYFRMGVRQKEMVKARLFRTPFAELRNRHVFLERRGLYRTPHKGQSQSGNPALRDVLRPTEGDFVAGVARASPDEYEVFKRLLAREEEEMEEEEEEDEEEEEEEEGSAALHAEGGDRDWHSSEPSPIAPCPPAPQ", "length": 338 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AKD9-1", "protein_name": "Borealin", "gene_name": "LOC121107214", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPARRKAAAGARGRKLSAFLKDFDREVRSRVEQLRTNGERLVKEMENLYDVELLRLPAALREMNWLEFFAKGGSQKVVEEAVTADLGITEINKLTAELIQTPLKIVTKEKSKQGIEATEEAAEVPLLPPAKKAKHDSQLLLEQAAASTNPRNGKVRTSTKKAPVSRSRRAPSARVKRVSKRSSKSSFITPATGRNLDLCARGGASIVTPRFDSRVFKTPGLRTPAVNERVYTISANGSPLADGNDVFITVPVGGGESIRLTASDLTKKNLLHLNPEARGIMKKLSVRLAQACSSAKTHR", "length": 300 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AMC7-1", "protein_name": "ODF3A protein", "gene_name": "LOC121107218", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPVTKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8W4F7J1-1", "protein_name": "40S ribosomal protein S26", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQPIHCTNCARCMPKDKAIEKFIIRNIVEAAAVGVISEVSVFAAYVLPKLYAKRHYCESCAIHSKVIRNRSREAQKVRTPPPRFRPTGAALRPPPKCM", "length": 98 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F8K9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTVTTFILLGLTDEPQLKTLVFIFLFLTYMLSVTGNIISLTSTDSHLKTAMYFFLQNFSFLEIAFTSACIPKYLYNIATGDKTITYNSCATQLFFTDLFAVTEFFLLATMSYDRYVAICKPLHYVTIVNHTVCRRLIFGSWLAGLLIIIPPLSLGLKLEFCDSNVIDHFVCDAAPLLKISCSETWLIEQMVIVCAVLTFIMTLMCVVLSYVHILKTILQFPSAQQRKKAFSTCSSHMIMVSISYGSCIFIYVKPSPKDSLAVNKGVTILTTSIAPMLNPFIYTLRNKQVKQAFNDAIKRIALFSKN", "length": 309 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9E2-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RLEFSSLSPAEVPLVAAAGGRGAFDMRCHECDTKNTFACDHIVTCPRGIRRCLTLSIRLSSREIYVYKGCTRNCTFIYADEQPPPGERKPPRSNSLYFVQCCNAITCNRGGPINLEKDITPPLILEEELGGTVRLGEATLFLSVASVLVSHALT", "length": 154 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBC5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLTHSFSFFSSSSSSSTYSSSYPLLPLLLQPQNQFRIWALKDYGQRNSTSLHDFILLGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSTAGQRKAINTCGSHLTVVSIFYGAIIYLYLQPGNSASKDQGKFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 331 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBS2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258626", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTAITTFILLGLTEDPQLQLLLFLFLFLTYILSVAGNLTIITLTLLDPHLKTPMYFFLQNFSLLEISFTTACIPRFLYSISTGDRTITYNTCFTQLFLTDLFVITEFFLLATMAYDRYVAICKPLHYMTIMSNKLCKTMVVCCWLAALLIILPPFSLCFHLEFCDSNLIDHFACDASPLLKISCSDTWLIEQMVIACAVLTFIITLVGVVLSYIYIIRTILKFPSAQQRKKAFSTCSSHMIVVSITYGSCIFIYINPSAKEEVNLNKSVSLLISPISPVLNPFIYTLRNKQVKQALHDSLKKTAFLLRK", "length": 312 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FCJ2-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSRKRNLPQCNPPKKQALSRSSRAELQFPVSRVDRYLREGRYAQRLSSHTPVFLAGVLEYLTANILELAAGEAHSSRKMRIAPEHVQRARSHNETLSSLFQASSVSRGAEEEAEEPLPEAGR", "length": 122 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FD42-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFIILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLNCCITQLFFIHSIFVFESGLLLVMAFDRYVAICYPLRYTTILTHPLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLLLDILLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVCIIILFYGPGIFTALTQRFGRHIPAHIHILLANVCILVPPMLNPIIYGIKTKAIQEQVALILFPKYR", "length": 314 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FH98-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VCHYGNYYSGLSCSCGYGCGYSRCGCNCDYDKCGYRCGYGGYVYGCCHLSCCGRYRPYGFY", "length": 61 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FHY5-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "DTGSCGAIVLTQTPLSLSVSPGEPASISCRSSQSLEEYGKNWLSWYQQKPGQSPRLLIYQATNRASWVPERFSGSGSGTDFTLKISRVEAEDAGVYYCQQYKEFPPTVIQPLTQTPLLGAQLHTWLCVVWGAEGQKL", "length": 137 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FIZ4-1", "protein_name": "Envelope glycoprotein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRPTLSRRHLPTRGGEPKRLRIPLSFASITWFLTLTITPQASSKRLVDSLTSPKPLSLTWLLTDSSTGITINSTQREAPLGTWWPELHVCLRLVIPGLNTMSTPPDILRAYGFYVCPGPPNNEEYCGNPRDFFCKKWSCVTSNDGYWKWPTSRQDRVTFSFVNSYTSYNQFNYGHGRWKDWQRQTQNRQISCSPSDLDYLKISFTEKGKRENIQKWINGMSWGVVYYRGSWGGEGSILTIRLRIETQMEPPVAVGPNKVLTEQGPPIQGQRPSPNPSDFNTTSG", "length": 284 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJ61-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSTKNKHLMKGSKKGPKKKVADPFSKKDWYDGKAPAMLTKKRNIRKTLVTGTQRTKITSDGLKGHVFSSEPCQSAE", "length": 77 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJT7-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKNPEVRKIHSAVFLITYLSTILGNLLIVVTMVTSQSLRSPMYFFLTSLSLMYVTYSSVIAPKMIVDSFSETTAISLEGCMAQLFAEHFFGGVGIILIIVMAYDHYVVCCLLLGGAWVGGSIHATIQLLFICQTPFCGPNVIDCFMCDLFTLLKLACMDTHLLGILVILNSGVMCMAIILILITSYVVILCSLKSYSFEGQHKALSTCGSHLIVVVLFFVPCIFLYVMPVATYPIDKAMAVSFTIVAPMLNPLTCTLRNAEVNNAMRKLWMKQNTLCYH", "length": 279 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKQ6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVQDQDEKKNPMWELGIHKLCLNICEGESGNRLTRAAEVLKQLTGQSPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEIFERHLRVREYKVQEHISLGTKYDPSIGIYSLDFYVVLGRPGFSFADKKHRTGCIGAKHGISKEDAMSWFQQKYDEIILPGK", "length": 163 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKY3-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGKFVKPGKVVLVLAGRYSGRKAVIVKNTDDGTSDQPYSHALVAGIDRYPRKVTAAMGKKKIAKSSKIQSFVKYSVDIPLHKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKCFFQKLRF", "length": 125 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FLM5-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGHQQLYWSHLRKFGQGSRSCCVCSNWHGLIRKYSLDMCHQRFCQHMKDPGFIRLD", "length": 56 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FNC8-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLTNYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIALISASYVFILHSVIRMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 301 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP10-1", "protein_name": "Ribosomal protein L19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSVLRLQKRLASSVLRCGKKKVWLDPDETREIANAKSRQQIWKLIKDGLSIQKPGTVHSRARCQKNTLRKGTASAGMPKKSVPERDGNVFKNKRILMEHTHQLKADKARKKLLADQPEARRSKTKEARKRRQERLQAKKEERNRTEVETKFCRLI", "length": 155 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP36-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQDTASIRTRKFRTNQLLPGKQRVIRVLHPGKATVPKTEIWGKLAKMNKRTPDVIFVFGFRTHFGGGKTTGFGMSHDSLDDYTKTNEPKHKRARHGLYEKSKTSRKQRKERKNRMKKVGGTAKANAGAGQKGGV", "length": 134 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FQE1-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQLFFIHSIFIFESGLLLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDVLLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVSVIILFYGPGFFTTLTQRFGRHIPAHIHILLANVCVLVPPMLNPIIYGIKTKAIREQVAHLLFPKQK", "length": 314 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A9J7F7T0-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "LOC100757015", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDYVMQFVEPSGQFVKDSIWLVKRCTKLDRKEFQKVAMSTAMVFAIMGFTGFVKLIHIPVNNIIVGG", "length": 67 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GY23-1", "protein_name": "Tetratricopeptide repeat protein 16 isoform X2", "gene_name": "Ttc16", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTDSSTEESVNVQTQKIPKLQVPETRETTLQRIFGTSQVFYSVSGVVKPRLTESTVPFRVREYYHQGHHCLEQEDWEMAVLYFSRALHLNPDQVEFYIFRAEAFIQLCDFSSALQNLRRAYSYEPENSKYLERLAFVLYLQGQCLYELCDFQEALYVFLQASDLQPQNPSFSYRCMACLLALNRHQDCLSLVTREVKQGRATADVYILRARIYNFFQKPKLCYQDLRSALLFNPKHPQAKGLLQVMVDQAKKSLQDASILAVQGKLHRALKRISCAIENNPLDPNLFLFRGTLHRRLQQFDPAVEDFLKAMDMVTDSQDNLVQKTQRQLLLTYNDFAVHCYTQGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALELCPKDEGANLRMGVLQEKMGLCEQTRRQFQKAEDHFSAAIKYNPVNAQYYLHRAKNRQLLQNIVGACQDIATVLLLNPKYPKMAPLMAKLFPGMSVEEVLNSHVAQLAKLQLRRMIESGPKASHPQSIVAKRLIERQKAQALMESWNWEQLFTRNPEEEVAPSESLQGKTLREKIEFKREVVEEKKVKILRKVTSLSDSYVDQTSSGSEFSILSPSTLETEVSTMEYKSTSNTAASSAERLLPQYLVTTKYKESLGLSMAPNVTQVSEDLHKSLTENIPDDGPRHHSSKAEATQRPKPRKTEPSQSLGKQRPSQRPSITEATKGPKPRKNRPALSPRQRLRRAKAVQAQNWKPRTNSNSQKTSSLLSNIAVIISSSNEAQDQSPVPSKADDISSYNDSTATSSTNTDSLRLSIHLSKPKYSKDQSPSHNKEEVSPTSNNYAAP", "length": 835 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GZF8-1", "protein_name": "Protein EURL homolog isoform X2", "gene_name": "C4H21orf91", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIIKRKATVIHHKGTMNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNLEGVPKSNLLHTRSLRGHKDCFEKYHLIANQDCSRSKLSKSTYEGVKTLLTKKINWIVQYAQNKDMDLDSECSKNTRHHLFNFRHKPDKKLLPQFDSQVPKYSVKGIAGSTGGLSSYTQRILEQRENTDFGLAILQDSDALWPHKHNQAQKKEETSSGPENVQTQNPRYSREELNSMTLDEVEQLNTKLQQQIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNYSKLPCLQVGRAGPRSHLPINN", "length": 304 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7JMJ4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100771730", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDFVNISLVTEFFLVGLTDQPELQMPLFFLFLAVYLITALGNLCLIILTVLNSNLHTPMYFFLFNLSFIDICYCSVFTPQMLMNFILRENIISYMECMAQVFFFCFFVVSECYVLTSMAYDRYMAIYNPLLYNVVMSPNLCLNLMFGSYFIGFSNAVAHTVCMLRLTFCDTNIINHYFCDIPPLLQLSCTSTYVNKLVIFVFASINIIVPTSTILVSYGFILSSIFHISSSEGRSKAFSTCSSHIIAVSLFFGSGALVYFKPSSAVYMNEGKISSVFYTNVVPMLNPLIYSLRNKDIKVALMKSLNSRNL", "length": 310 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AA74KSW7-1", "protein_name": "Predicted gene 3002", "gene_name": "Gm3002", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNSSKLGVWAAGVPPSSPTLLFRRWVMKVESLISQPMTSGKNELQDHLIFISEKALHKRLFQKENGDEGVTRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSPAESRTWHRPGHDLPQREVLEEEH", "length": 280 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9RU54-1", "protein_name": "Small integral membrane protein 17", "gene_name": "SMIM17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSLRPEQVRGLLEPERAKTLLPRENKAWEKRAAFAKDWVAVEVGASGCGSDEKDLPSPKTLVPQEWSSVEEDDESEDSQPHWAAALPTSPSCPSQDTGTGSGADLCLQCSSPRTPPWLPWAFSHTIESALPTPPRAWLWSLL", "length": 143 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AAA9RY85-1", "protein_name": "Core Histone H2A/H2B/H3 domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNMPEPAKSAPAPKKGSKKAVTKAQKKDSKKRKRSRKESYSVYVYKVLKQVHPDTGISSKALGIMNSFLNDIFERITGKTSRLVHYNKRSTITSREIQTTVRLLLPGELAKHAESEGTKAVTSIPALSKYNMPSRC", "length": 136 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0KVZ2-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EFGFRSVASAGWGAACPLGLRHVISCGGRAGLEQKARALSSSSTGLFPEGQQRAPPDFSDDICTDKKKNQERGINKWPTTTRNKNYFFVDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 192 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0L002-1", "protein_name": "Oocyte specific homeobox 2 like 1", "gene_name": "Obox2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ILQSVQNTDMIEGPSFLPKFQMSSYTPMDTSSQLPQEPSWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNWQESQGSSRESSIQMQPGPVMDPGFPTLRSPSGHPSHQRPSRPSSRSGFHVPIEPMALSDKHGGKQTGPVAPRKCRKERTQYSAKQKSVLQEHFAECQYPDKKLCLELATLFGVTENEIKVWFKNNRAKCKQKNVPEALPETNGGPEAVSWSTDFPGSIAVVGCDQGEPMATAILDVDSTPKLNCSQESSLDGNWTYDGAMCCLPEDVLDGNDPVTAGDSGESAPVEAQSDLAAAGAPVAMAVDTQNPEECEDLPLLDEGVWQWMLEDFHQLEDWFTKNYIESPSSASHPLD", "length": 362 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LHI6-1", "protein_name": "CD27 antigen", "gene_name": "Cd27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAWPPLYWLCMLGTLVGLLATPAPNNCPDRHYWIGAGLCCQMCGPGTFLVKHCDQDRAAAQCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECTCSKGWQCRDQECTECDPPLNPALTSQPSEAPSPQLPPPTHLPYATEKPSWPPQRQLPDSTVYSRLPSQRPLCSSDCIRIFVTFSSMLLVFVLGGILFFHQRRNHGPNEDSQAVPEELCPYSCPREEEGSVIPIQEDYRKPEPASYP", "length": 251 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LYA6-1", "protein_name": "Prostate and testis expressed 2", "gene_name": "Pate2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSCLTSELQGSACLCLPSTGSYKHILQHLDLGTMCYKCKKYHLGLCYGLMRSCTLKHRQSCAAENFYILTNRGQSMYHYSRLSCMTNCEDINFLSFERRTELICCKHSSYCNLPMGL", "length": 118 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0M6C3-1", "protein_name": "Prohibitin", "gene_name": "AABR07037878.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNKNIKNSISISVCVGGVGGVRARAHAHAHTSPHACTRVIHAFVMLEVGPRDFVHIKKAFRGIDVKKPVIFDCRSQPRNVPVVTGSKDLQNVNITLRILFRPVTSQLPRIYTSIGLDYAERVLPSITSEILKSVVARFNAEELITQRELVSKQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVEKAEHQKAAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSSSQNITYLPVGPSSVGPSVRQSMFLRLPQ", "length": 286 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58FXL6-1", "protein_name": "Cytochrome P450 2X10.2 isoform X2", "gene_name": "cyp2x10.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDLRGIYSYMLSTVNSLVRDSSLTNFKKEFCVHAYLLSVCIQYQSSVWSSSRSVTMLTALVLLCLGAFLLYLQLRIRRPKNFPPGPAPVPIFGNLLQLNRISPLKDFDKFAQHYGSIYGIYIGSQPAVVLTGQKMIKEALITQAAEFSGRSNNMMFSHVTGGKGVIMADYGESWREHRRFALTTLRNFGLGKKSMEQRILEEVKHICLLLEESAGKSIDPQHLYHQAASNIIASVIFGSRFNYKDAYFQTLITSVEDLTKITIGPWAMLYEIAPVLRIFPLPFQKAFQYFEQITKHVLKVVEEHKTSRVAGEPRDLIDCYLEEMENKSDHRTSFDESQMVTLLFDLFIAGTETTSNTLRTLTLYLMTYTHIQEQCQREIDEVLGARDHVTYEDRNAMHFVQAVIHEGQRVADIAPLSMFHSAKTDTQLRGYSIPKGTIIIPYLSSSLREEGQWKFPHEFNPQNFLNEKGEFVKNDAFMPFSAGPRVCLGENLARMELFLILVTVLRRFRLVWPKDAGEPDFTYIYGGTQSVKPYRVIVEPRMHGEACKFVD", "length": 552 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J797-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "si:dkey-233e3.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANAKQLLKNSLDELVEAELKEFQWYLINDHRDISKAEMEKADRLKTVDKMVSCFGPKGAVKTTVDILRKINQNELAEELENKHKQGNCMSARAEGAVLETCKSPPFDYTNTSRELKKKLKEDYEKILVGNSQTGHKKYLEDIYTDLYVVENETGGRERQHEVIQMESKHNQQDRPLKCNDMFKVQPDTGRKHRRILTLGIAGVGKTVSVNKFILDWAEGKDNQEIVFIFPLPFRRLNLIKEEKYSLIGLLNKYFFSISGGLSSLPEKQGKVMFIFDGLDEYRFKLNFKKDDGFTDVNKEMTVSEIITNLLKRHLVPSSLMWITSRPAASSLIPRDLIDQVTEVRGFIDEQKEHYFIKNSSPEVARNIIGHIKKSRSLYIMCHIPVFCLISLTVLQPLLGQESNEKTPTTLTGMYINFLLSQKQQMKEKYRNDTESEANACSFDEIVLKLGKLAFKQLQKGQLIFYKTDLEKCGLDVRQGSVFSGLCTRMFQEENHYSGEQVYSFVHLSVQEFIAALYVFFTYKNKKANLFLDSWKKELKWKLSEKPLFKLHTAAVKKTLQSKNGHLDLFLRFLMGLSLESNQSDMKELLPWLKLKTGMIKDTTDYIKKKIEEENSAERTINLFHCLNELNDDFVEELQKSLCSGNLTAQDLSSAQWSGLVFVLLMSEETQEKFELQKYRRSDEALMRLIPVVKNTTRALLQCCNLTAQSCESLSSALQSSNCVLRELDLSNNDLQDSGVNLLSNGLKSPKCKLEILRLSGCMVTEEGCGFLSSALTSNPSHLRELDLSYNHPGDSGLKLLSQKLEDPNYTLNKLNLDHGGEKWFTAGLHKYACFLTLAPNTAHIELRLSEENRRVTRVGERQQYPDHPDRFDHHAHVLCRESVCGRCYWEIEMNAGDRVDIAVSYKSIKRKGRGYECVLGQNAQSWALICYVNRVAFRHNMIETRLPVKLMSRRIGVFVDHSAGTLIFHNIYRDSMSLIHSVQTTFTEPLYPGFWVEYGSSVKLC", "length": 1006 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JHM1-1", "protein_name": "Phoenix isoform X1", "gene_name": "pho", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRSKGDTSVGEVMEADPRAELIFETPPPDVVSSINACFEEIDSALKIRRDPSVHSPPSDSDSESLFITQSVTKVVHTKRRLRSSKKPDSISDDSGYVRERRLSENQQTECEEESRSLRSSRRKRSKWEMYASARKATFPFLMKSLKTQHLPIRKHQILENSEVGGFFKCIKKIKTGSVKMGKVISSHLFQSPISDSSEEEDQNSEHDVISVDKALFVPGYKRGINFKWLPDFIRERRTLENYLSNGVDKEKKTEQIIEYRQRNQHPQRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDLEIAECAENSHEGHKVVIEETQRQTVEEASAHLEHEDDLNCKVVEYRKRKRHPKRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDIESVECAENSHEDHNVVIEETQRQTVEEASAHLEHEDDLNCKNQPDVDQPNESNFIGPPQEGDISTQSDTQQTDSDIGSVDLFSPLNSPKRDDQIPNTTSITANVEENDQDSDVTQIESEGQHVSTFTQETQKCFANEEYDSDETHIDTESLSRFKPRTPNKQFTSTKHPEIPQFRVQSPKPPSRQAETVNVQLSPKHLPLSNVPLSEVPISPCESAIVGRQKTMVETETDSPMFKITGPSFLKRKRKRTKDKNAAADFKQHDTNGDVGQMVSCPGDDITGLKAVPIENIEACGVEHEMAIGEQTEELGLKSKELLEESVLSTVNSVSTKSKREKMKKYKVKECEAVENQLVETSKKAKKKKKDKERIATSYPEENNLTNIQSNEGFDSAELRVKEVNQSSQSLNTDQPTCVQTSEEITGETELKKKTTRHETDDPLYESVGLDVTLASQFDVGLRIDEQQEGLVTEEAERDERLQGKAMKVAKGKKKIQDTSFQVDHDIGLDKQRSDSGAKPANLDLDGLESLTIKKKKKKKKKHKLKEKTDPKLDFDFDHNVQFFQTDRLQTTDSVLLDSTHTNKQKKKKLKCQNDTDQSSDLKQLHVVGSKLQTIDLPKTDKHMERTGVSSSDALLEHMDDRTLGMRENNTIQTDQIEHLQTSEEVTRCSSPRLSSDKKREKTSVHPNLDASSVFQFDGFKANEDQAITQNTTKEKQISSEQLENNLVGPPSQVENIANVNSSVLLDHTHMNTLREGQLKEQTYKELALAFGLKQLCIVVNKLKTTDLPKTNKNMEGTGVGSSDELLKHTDDRTLETRENNTIQTNQIEHLQTSEKVERHSSPRVTRLSFAKKWMKTSVDSNLDASSGSQFDGLNSMAKEDWTFSQNMDLPLKRTKNKQKDKERTGVSSDALLKRMDDRPPEMRKKNTIQTNQIEYLQTSEKVTRRSSPRLTRLSLAKKMEKTSVDPNLDASSGSQFDGLKEASKEDRTAPRNSIEEKQSDAISSEGLENNPAHLVSTNKSDNTSPSSQVDNIVGLQSDANSVLLDHTHTDKQKKKKIKHKLIEQTEKELTSEVEDNVQPFQFIELRAMDLPSKRITNKKLKDRKRTGVSSSDAVLKHIDDGPSDMRENNSIQTDKIEHLQTSEEMTRCPSPRLSSDKKRKKKYVDTNLDASSGFQFNWSNGMAKEYSKNSTNISSLDNMHTSKQKKKKKQKLKEQKNVESVGDNVYSLEPDQFSGLQITEIKTKKKDKKRTKQANVEENDLKGILSNKAFKASQTYQLEHIQTSEEIKGRSPNAASKSAKKKKKKKNETKNPQYESVNLDLSLAKEDRTTTQNHTEETQGDGNAVEHLEMNPAGLIKVSKKKKKRENAGIVQLDNIIGLQSGSSTDVKSSVLSDSTDTNKHKKKKRKTLKEQENVEAEGDDVQSVEPDPFSGLQITEMTTKKKRKHKRCEEQRCLRGVSSHEAFKAPPTNLLQHIQTSEEISQCQSPNVAALENGGSPYQLENITEMQPGNSIDINSSEILYSTCTHKQKWKKLKQQENVEADANDVHSAELNLFSELKISEPTTKKKKHKKCVEKCALKDISSNEGIKAPQTSQLEHVQTSKEITQCQSPNAATLKSEKKKKQKRDETEVPQYLDASSVSQFDDVTRLKKQAKVDRTTTQNSSEETQNDDISSKQLEMNPAHLIKVSKRKKKREKAGSPYKVDKIVGLQSGNFTDVNFSQLSDSKRTDKQKKKKKIKLKEQENAEADVDDVHSVELDQFSGLQITKPTTKKKRKHKRCVEESGLRDISSNEAYKAPQTNQLEHIQTSEEITPFQAPNVAALKSAKKKKKKRDKTVEPQCLDASSVSQFDDVKTRAKEDQTLTPNSSKETQGDDSAVECLETNPAGLMKVSKKKKKRENAASPYKVDNIVGLESGNSADVSSSVPSDSTDTNKHKKKKRKKLKKQEIVEADLQTSEEIIQCQSPNVATLKSVKKKKDETKEHQRLDVSSVSQFDDVSRLKKRAKEDRTTIQNSSEETQSADISSEQLEINPAHLIKVSKRKKKRENGRSPSQVGNIVGLQSGNFTDISSSVLSDSTRTDKQKSKQKKKLKEQENVEADANDFHSAEPDQFSGLQITEMTTKKKKKHKRCVEESGLRDISSNYAFKAPQTNQLEHVQTSEEITQCQSPNVAALKSEKKKKNKRDKTDKPQYLDESSVSQFDDVKKRAKADRTTTHNSSEETQKDNISSECLELNPAHLMKISKRKRENKSLGLLSENTADLNSSSLLDGTDTDKHKKKKRKKLEGQENVEADVDDVHSAEPDQFSELQIPEMTTKKKKKHKRCVEESGLKDISSNEALKALQTNQLEHIETSEEMTIKTVKKEKKKRDATEEPHYKSVDLDVSPTESTTEAKLNPTKHKKKRKQSFSGSHDAHEAPERKRKKDRN", "length": 2809 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MGZ5-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1-B", "gene_name": "hs6st1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNDTERNMVERTSKFLLIVVGSVFFMLILYQYVAPGVINFGSPHGYLLGEEDMTIFPTPDPHYVKKYYFPIKDLERKIDFEIKGEDVIVFLHIQKTGGTTFGRHLVQNVRLELPCDCRPGQKKCTCYRPNRKETWLFSRFSTGWSCGLHADWTELTNCVPGVLNKRESKSKKMRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQQFMDCPYNLANNRQVRMLADLSLVGCYNLSTVPEKRRSQLLLESAKKNLRDMAFYGLTEFQRKTQYLFERTFHLKFIRPFMQYNSTRAAGVDLDNDTIQRIEELNDLDMKLYDYAKDLFQQRYQYKHMLDRREQRLLRGHASFHSPFREDGAGGEGTARLPTEDYMNHIINGW", "length": 407 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1EC97-1", "protein_name": "Dual specificity phosphatase 14", "gene_name": "Dusp14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSRGHSTLPRTLMAPRMISEGDIGGIAQITSSLFLGRASVASNRHLLQARGITCVVNATIEIPNFNWPQFEYVKVPLADIPHAPIRLYFDTVADKIHSVSKKHGATLVHCAAGVSRSATLCIAYLMKFHNLCLLEAYNWVKARRPVIRPNLGFWRQLIDYESQLFGKSSVKMVQTPYGIIPDVYEKESRHLMPYWGI", "length": 198 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1XQX2-1", "protein_name": "Neurexin-1b", "gene_name": "nrxn1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMILHLGAHLLFIGLIVCKANAGSSLRFTGSDEQWVAFPMWNACCESEMSFSVKTTHLNGLLVYFDDEGFCDFLELHVHVGKLRLCFSIFCAESTCVLSDVAINDNRWHSVSIMRNFRNTTLIVDDEVKWEEVKSKRRDMTVFSHLFLGGIPSELRSVSLQLTSKTVKDHTSFTGWIMDVKVNDSEPAIISSAGVHEDLCGSENTCLNGGVCSVVEDKPTCDCSQTGYQGKDCSEGLAHLMMLDRGMEEYVATFRGSEYFCYDLSLNPIQSSSDEITLSFRTLQRNGLMLHTGKIADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVGYAMVTISVDGILTTTGYTQEEYTMLGSDDFLYVGGSPSTADLPGSPVSNNFMGCLREVVYKNNDAELELSRLAYQGDPKLQIHGVVAFKCESVATLDAITFETPESFLTLPKWNAKKSGSISFDFRTTEPNGLLLFSCGRAKQHNKEAKSPVTLKVDFFAIEMLDGLLYLLLDMGSGTTKTLALNKKVNDGEWYHVDFQRDGKSGTISINSVRTPYLCPGDSELLDLDDPLYLGGVPESSSGTVFPTGAWSALLNYGYVGCVRDLFIDGRSVDVRRAAELQRAAGVKPSCGKEPSGKCVSEPCLNRGVCREGWSRYICDCTGTGFLGHSCERDATILSFDGSKFLKVQFSAAMHTEAEDVSLRFRSLRAYGVLMASTSTHTTDTLRLELEAGRVRLTVNLDCNRINCTTSKGPESLFAGQNLNDDEWHTVRVIRRGKSLKLSVDDLPTVDGEIPGDHTQLEFHNIETGIITGKRQLPTMPSNFIGHLQSLMFNGKPYIDLCKNGDIDYCQTNAPIGFKSIIADPVTFKSCSSYVTLPSLQAYYYMYLFFQFKTTSADGLILYNSGDGNDFIAVELVKGYLHYISDLGNGAHLIKGNSIKPLNDNHWHNVMISRDPNNLHTVRIDTKTTSQTTLGAKNLDLKGDLFVGGVPEQMYKDLPKLVHAKEGFQGCLASVDLNGRLPDLMTEALVCIGQIERGCEGPSSSCEEDSCANQGVCLQQWENFTCDCSMTTYAGPLCADPGSTYVFGRQGGVITYSWPPHDRPSTRVDRLALGFITLMEDATLVRVDSSAGLGDYLKLHIVKGNVVAVFNVGTYDINIEENGKLVNDGNYHIVRLTRSGGNATLQVDDLPVIERFPPGHIDSHRLGTGRLPYRRLVEESLPKNGRQLTIFNSQMTIRIGGWQKQQVSGFQGQMSGFYYNGLKVFSMAADGDPNVRMEGSVRLVGELQSSSTPHGGATVYQSSVTEISSTTSNTITITYSTPADEQQTTDELLVASAECPSDDEDIDPCEPSSGTLCCFVPPAGPTGPAISSFPGPAEVFRESNGTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDESRNYICNSNGAALKEKNTADDDSGSKSKKNKNKEYYV", "length": 1470 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2A7I1-1", "protein_name": "Zinc finger protein 978", "gene_name": "Zfp978", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFAPHQESGRRTTKRMSASLENTAQCLLTFKDVFLDFSSEEWECLNFAQRTLYMDVMLENYNNLLFVENHCICGNYEKEKVVEQDTQHIFNEHGHIQEKSFKCNESSNIIHESSESTPHKTNHRDATLQSSNLKRHKTGTTKQVCTYKDCVNCLKGSSIISLNQGTHVEKKEHNRNKNLDEVLVSKHKPIVRQNNSEMNTYTCGEFDKCFTQSDNLQSQQRIYPGKKSYKYSESDKCFTQPSHLSIHHTIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTQTSHLSIHRRIH", "length": 335 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A8N2-1", "protein_name": "PRAME like 25", "gene_name": "Pramel25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A9Q9-1", "protein_name": "MAGE family member B5B", "gene_name": "Mageb5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRGQKNKHHRNRLKNKKHNQEKVHPQKDESQEKGHHKRDDFQDHKEARDNAAVEEKSSCSSPSVPGETLEKPPASKTSSDAGWLSCVSSPATVCGDELEFDDGTYFHCGGNSLYSEYRTCQENPCKHCLDMYVNLVEQYVLYKFKMKKLIDRNKLIDLIEPKYRYNFSDIFKRAFENIEIVFAASVIEIDSTNHVYDLVSKLKLPNKGRVCPGRGLPKTGLLMTILAMIFMNGTSASEEDIWKFLNYMQVYPGRKHFIYREPRKLITQDFVKLKYLEYKQISLSDPPCYRFQWGPKAYTETTKMKVLEFMAKGSGVEPSTFSVQYTEALREENQKTKIRKWYPILAQKHCPGHSHQHVQKVMKPQ", "length": 366 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ADW8-1", "protein_name": "Predicted gene 15128", "gene_name": "Gm15128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANREDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVQSERSHVYSGRTNNYTDRPQHDLSNRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESFDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW6-1", "protein_name": "PRAME like 22", "gene_name": "Pramel22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRLLREEALAISSLKDLPNMLFPVLFEEAFIFGYTKILKAMIPEWPFPYLSIAVLIDNCNLESLKAVLEGLDILLAQKVHSSRCKLKEISWRDTNHGLDGIRPGSHEVEGLSEFMEQKHPNCVEKKELKVTTELSVMNGRLNESDTYLLEWTQQRKDSIHLFCRKLVIQSLTKATVIEIFKIVNADCIPELELCSLCLEDLAFLNPYLRQMDNLLELTLDHITDSLSIGDSEMLEERMITLVSQLPTFPCLQKLCINDVYFIYGNLKEFLGCLKKPLVSFCISNCELSQSDLDYLPYCLNIFELKCLYIINIHLQYLCLEPLGFLLESVRHTLGCLALKSCNMGEPHFKSLLPALSQCFHLTDVNFQENELSLLSLKQLLQHTSKLTQLSYEMYPAPHECYDDRGVILSHRIEQFCPEVLDMLRAKRQPKDINFVTTQCSKCGIYYVYDLETQRCRFLK", "length": 460 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW7-1", "protein_name": "PRAME like 23", "gene_name": "Pramel23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVNSPPTLMKLASQRLLREEALAISALKDLPNMLFPVMFEEAFINGHTKILKAMIPLWPFPYFSLGMMIKNLTLDTLKAVLQEIDILISKVVHSSRCKLKEIKWKNTDYGLQGIWPGSHEFDGLSEFMEQKQPDCGVKKELKVITHLKLMEGSLDECATYLLQWAQQRKDSIHLCCRKLKIQGSINATVIEIFKIVHADCIQELELCCLCLEDLDFLNPYLKQINNLIRLKLDEIKGTVSMGESRNIDEEKVITLISQLPTLQHLEKLCINDVSFIEGNLKECLRCLKKTLEILCITNCYLLQSDLDYLPYCLNILELKCLDFSNIPLSHLFLEHLRFLFERVRHTLECPILKSCEMGESQFNSLLPAISQCCQLTEVNFYDNELSLIFLKKFLHHTAKLSQLTYELYPAPLECYDNRDIILSHRLENFCPELLNILRAKKTAQGGHLCYNPML", "length": 455 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AHC7-1", "protein_name": "SSX member B14", "gene_name": "Ssxb14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVISCEKIPMEVLHKPKNICKAFQDISTYFSGEEWGKLTEWQKSAYMYMKRNYTRMTGVTVNQPVFMSGKEQAKQSLVKGIEVHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 168 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AK42-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "Cwc22rt5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSVAHMKQSSGHNRRETHSSYCRSSSPEDRYTEQERFPRDRDYSDYSRSDYERSRRGYSYDDSMESRSRDREKRRERERDADHRKRPWKSPSPDRSPARGIRQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLAQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEEEEEEEEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQRTYENFFGLLAGRFCMLEKEYMESFESIFKEQYDTIHRLETNKLRNVAKVFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKTALTSSSSESSSASDSSDSDSDSSESSSESSSEASDSSSSSSTQSSTSAKGTRKKRQGKARGEEVDKLARGHQALERRQGGREDQRHQEGRTERARSERHRAQNSRDADWRDSLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKKQREKRFFL", "length": 830 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE0-1", "protein_name": "Reproductive homeobox 2F", "gene_name": "Rhox2f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYLLDVGPEEDEENANGVKTLMVLLAGDGRNEGESGRGLPGSGASAAEGYRAGEISAGGPAAQVADLMDDSNQEDLGATACDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHLWRHSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE1-1", "protein_name": "Reproductive homeobox 3F", "gene_name": "Rhox3f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSMSNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDNTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEALRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ASJ1-1", "protein_name": "PRAME like 14", "gene_name": "Pramel14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLEAPPTLLQLAAQCTVRKEVLTISVLQNLPMKLFPPLFKEADILRKAKMIKLLVEYWPYPSLLVGLLIDKTNLETFQAILEGVGTWLKRKYRPRMGKLQVVDLRNGHHDFWDMLAGREGGDQLVETMPEKQEVEGHSRRQRLRVFSDLSFKSSRHEDKQQTHLLQWAKDREGFLHLCCEKLEIGALGVSKVKKVLKLLQPEFIKELELNTVGNLSKLTKLVPCISKMRNLQKLMLVRIFGRHTYTPLEERNVTKILSLFPKLSYLQHLTIDDVYFLRDHMNELFRYLEAPLLSLTITLCQISQSDLESFSQHWNYGQLKHLCLKGVSLSTLNVTPLKFFLESVADTLQTLELEDCRMKDSHLRILLPALTKCTRLTSINFYDNNISRDVLQDLLHRTANMSQLTMELYPAPVEVYNEWSYVQVERFSQLCAELMNTLITVRRPKSVCFGTYSCYDCDTHCIYGNQTTFCECLE", "length": 475 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ATW2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIHNVTEFFFLGLSSNQEVQRVCFVIFLFLYMAIVLGNLLMVVIVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLIVDLLAEKKSISVWGCMAQLFFMHFFGGIEMFLLMMMAYDRYVAICKPLHYTSIMNRQVCTVLVGMAWMGGFVHSLAQVLLIFRLPFCGPNIIDHYFCDVLPVLKLVCSDTFLIGLLIVVNGGTLTVISFVVLLSSYAVILFHLRTQSAEGRRKALSTCGSHVTVVVIFFAPCVFIYLRPTATLPIDKMVTVFYTVITPLLNPIIYSLRNAEVKKVIKILCTRATKVDKK", "length": 309 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWL9-1", "protein_name": "Reproductive homeobox 2C", "gene_name": "Rhox2c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSVNYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGASAAEGYRAGELSAGGLAAPVADLMDNSNQEDLGATGCDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHGWQQSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWM0-1", "protein_name": "Reproductive homeobox 3C", "gene_name": "Rhox3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BED8-1", "protein_name": "Predicted gene, 58953", "gene_name": "Samt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQFVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEE3-1", "protein_name": "Spermatogenesis associated multipass transmembrane protein 1d", "gene_name": "Samt1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQLVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI6-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 10", "gene_name": "Msantd5f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLAWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI8-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 8", "gene_name": "Msantd5f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLVWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFR3-1", "protein_name": "Histone H2A", "gene_name": "H2al1j", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTHSQRGEFPLSLVDRFLPEGNHSGRLSSSAPVILDSVLEYLSSNILELAGEVAYTTGRKRIAPEDVGLVVQNNEQLCQLFKPGATSVFDPPEPDDN", "length": 109 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFZ7-1", "protein_name": "BTB domain containing 35, family member 9", "gene_name": "Btbd35f11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BH64-1", "protein_name": "Secretoglobin, family 1B, member 30", "gene_name": "Scgb1b30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLTGALLLLGAALLLTSEGDCGLCPVLQKKVHKFFDGTTEEYVEYLKQYNNDPLVLENAANIKKCSDRMLAEEDKTQATNFINKVTGSRSC", "length": 92 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BHG6-1", "protein_name": "BTB domain containing 35, family member 7", "gene_name": "Btbd35f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSFGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI40-1", "protein_name": "X-linked lymphocyte-regulated 4A", "gene_name": "Xlr4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI45-1", "protein_name": "X-linked lymphocyte-regulated 5A", "gene_name": "Xlr5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKKKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIMETQDQDISMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI50-1", "protein_name": "X-linked lymphocyte-regulated 5B", "gene_name": "Xlr5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQQTIVEKEISKVQNRVIMETQDQDIAMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI74-1", "protein_name": "SSX member B6", "gene_name": "Ssxb6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWVKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEIHDSDDECFEGSFGVTPIKRMKLTSVTISIHNVEGSHDSGENDSNLAETGGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BIM8-1", "protein_name": "Major urinary protein 18", "gene_name": "Mup18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 181 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CEK7-1", "protein_name": "Major urinary protein 14", "gene_name": "Mup14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG71-1", "protein_name": "BTB domain containing 35, family member 19", "gene_name": "Btbd35f20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLQPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKMRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTLKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG92-1", "protein_name": "BTB domain containing 35, family member 10", "gene_name": "Btbd35f10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CGC2-1", "protein_name": "BTB domain containing 35, family member 3", "gene_name": "Btbd35f4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQRMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 496 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A3KG49-1", "protein_name": "PWWP domain containing 4C", "gene_name": "Pwwp4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSEYVLCGWKSQLCPARVLSRPRTPAHSKRRGVPFLEVQILPVGEKRRVRSSKVRPLAKSEIISINSLAGKESRGRGSPGQTRASRRALKVALDGLGEGSSFFQGGRAGSRRTSTLAPKVPKEQASSSSSSLGQRLRLRLRQLLPLSLCQRLHLHLRLRLHLHMHLCLQGRNQKGQGLSQRSPGKRVRPDPGPVMMGSQNVPAVPVGEAQAHTAAGLPRSEVEGDVLRGTRVWPSYSKKTPLGKAGGNPGKRKPGTGKRKLRSLSAPASRKGTRSKTEQQAASGPPRHISISPKALKQRVRCAGLEIRAAGAQRKTALAENKDHPGLGTPKPDSKRASAACMPPVLRLRRSLRIASRKKKTHVLCALCGLPEWEPQVHSKVTNTRFKRRGARVQKDAKATNVVSAQEPSTIEQGTLVWFKFQDLPFWPAVVKSVSKIDKMARVLLIEGNMQFERRGIRVPLRKLKHLDCGEKVSLVRRASRLYAQGINWCFSVIDHYREGLSRGSLLGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVSYAELEDWEEETALGGKGPYKKLLPDRMRAAWDRANQKLVDFIVKRKGADQHLLDIVKGRKPSRWLDDLWKSKREVFCIETYLEDDDQLHLVARHLQEVAKEADEALLSLARGDKVRFTMEVLFPEAIIYSIAALDELSYKEAEEKYLRGPPVHYREKELFDKTILKAARKRSAARIRAARDPPVPTP", "length": 728 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A5WVZ0-1", "protein_name": "2.7.1.138", "gene_name": "cerk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKQSTLLCSELSVQRRLYEVTLNCAILAWKDVQNAKKHTGRAIYGAVKAGSHCVPVCEIIAVQEKEDDSPCKDTGKWQKVPQSPTDSCQHAFTVYYVERTRQHCWRCSNVTFQYSEHSLCLLWIQTIKEQLALLSAQSTEELAGVHQPLRRKTTRQADLRPQSGPHLFPGFHFHRRDWPHSFSAHPSELRFYIIADGKEPVMKCTGDCFSPRVQLHHLMQLIDGLHQASRKMQFNCQMNIMMFLPPLYHQPGNNGFSLFVSIVTEHANHARDHLKAEADLKKYDGVVCVGGDGMFSEIMHGLVSRTQQDAGVDENSTEETLIPCGLRIGIIPAGSTDCICYATVGSNDPVTSALHMVVGDSQPMDVCSVHSDDRFLRYSVSLLGYGFYGDVLKDSERKRWMGPARYNISGVKTFLSHRYYEGTVSFLPAEENLGTPRDKVQCRSGCSICRRSSSDKLLSKEDEASVSDVDCRDTWTVIRGKFLAINAANMSCACPRSPKGLSPSAHLADGTTDLILVRKCSRVDFLRHLLRHTNKKDQFDHSFVEVYRVKQFRFTPRFQECGSEMDLRESRAGGKHFFCQICRENRACGCMSSQSNWNCDGEILPHTAIQVRVHCQLIKLFARGIEEQPVFEDLYAHCQLNNPPNHEP", "length": 649 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWD5-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "man1b1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLPSTRKDFVSLTLSESGSYSNSKQWRRQSCWRKWKQLSRLQRSLILLTLMLLLVCGIATSPTLIGHWRGMNGDDVKNSFVVDLKNEYRSILPEPPSERKDFDRRGAFGLEKLLQGKVNVSGVLGDQNHGLDLKNADKGSEGQKPIISWRGAVIEEEQASDTDTKDTENQGDPASLALAESRLEAVREAFRHAWKGYKDFAWGHDELKPISKSYGEWFGLGLTLIDALDTMWILGLQEEFAEAREWVAKELSFDKNVDVNLFESTIRILGGLLSTYHLTGDNLFLDKAKEIGFRLMPAFSTPSKIPYSDVNIGKGTAHPPRWTSDSTVAEVTSIQLEFRELSRLTGDPKYKLAVMEVMKQVHKLDGKQDGLVPMFINTNNGLFTHQGIYTLGARADSYYEYLLKQWIQGGRIEQELLEDYLQAVEGVKKNLLKKSTPLGLTFVGELSHGHFSPKMDHLVCFLPGTLALGVHYGLPADHMELAKQLIETCYQMYAQMETGLSPEIAHFNMHDGSTQDVDVKIADRHNLLRPETVESLFYLYRLTRDKKYQQWGWEILQNFNKYTRVPTGGYTSINNVRDPSYTSPRDKMESFFLGETLKYFYLLFSEDPTLISLDKYVFNTEAHPLPVWPQAE", "length": 632 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NCW0-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 3", "gene_name": "USP17L3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALASGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NCW7-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4", "gene_name": "USP17L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATEESTLDHWKFPQEQNKMKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSMNSTDQESMNTGTLASLQGRTRRSKGKNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NDS4-1", "protein_name": "TBC1 domain family member 3B", "gene_name": "TBC1D3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGRKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NJZ7-1", "protein_name": "RIMS-binding protein 3C", "gene_name": "RIMBP3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKDSPSPLGASPKKPGCSSPAAAVLENQRRELEKLRAELEAERAGWRAERRRFAARERQLREEAERERRQLADRLRSKWEAQRSRELRQLQEEMQREREAEIRQLLRWKEAEQRQLQQLLHRERDGVVRQARELQRQLAEELVNRGHCSRPGASEVSAAQCRCRLQEVLAQLRWQTDGEQAARIRYLQAALEVERQLFLKYILAHFRGHPALSGSPDPQAVHSLEEPLPQTSSGSCHAPKPACQLGSLDSLSAEVGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHELIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARDLSEQASAPLAKDKQIEELRQECHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQRESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSEVRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQRDPQKALCDLHPSWKEIQALQCRPGHPPEQPWETSQMPESQVKGSRRPKFHARPEDYAVSQPNRDIQEKREASLEESPVALGESASVPQVSETVPASQPLSKKTSSQSNSSSEGSMWATVPSSPTLDRDTASEVDDLEPDSVSLALEMGGSAAPAAPKLKIFMAQYNYNPFEGPNDHPEGELPLTAGDYIYIFGDMDEDGFYEGELDDGRRGLVPSNFVEQIPDSYIPGCLPAKSPDLGPSQLPAGQDEALEEDSLLSGKAQGMVDRGLCQMVRVGSKTEVATEILDTKTEACQLGLLQSMGKQGLSRPLLGTKGVLRMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALTPAGVSCYTFQGLCPGTHYRVRVEVRLPWDLLQVYWGTMSSTVTFDTLLAGPPYPPLDVLVERHASPGVLVVSWLPVTIDSAGSSNGVQVTGYAVYADGLKVCEVADATAGSTVLEFSQLQVPLTWQKVSVRTMSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCPQKLSLAPPSAKASPHNPGSCGEPQAKFLEAFFEEPPRRQSPVSNLGSEGECPSSGAGSQAQELAEAWEGCRKDLLFQKSPQNHRPPSVSDQPGEKENCYQHMGTSKSPAPGFIHLRTECGPRKEPCQEKAALERVLRQKQDAQGFTPPQLGASQQYASDFHNVLKEEQEALCLDLRGTERREERREPEPHSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGPQQLGTGANTPARVFVALSDYNPLVMSANLKAAEEELVFQKRQLLRVWGSQDTHDFYLSECNRQVGNIPGRLVAEMEVGTEQTDRRWRSPAQGHLPSVAHLEDFQGLIIPQGSSLVLQGNSKRLPLWTPKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLHGH", "length": 1639 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A7TZG3-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 9", "gene_name": "Skint9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLLLECTSGSLIPPAEMTWRDSNGNIIPHSTAFNSQDRDGLLYLKSSILLKNRAKGPITCSIYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSIYLITIIFLNFLRGILVFCCLRRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRSRAFLLDDTYPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNSSKSDDSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS", "length": 319 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A7XV14-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 11", "gene_name": "Skint11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSASCLPGFFMVCILLKITVLTQVMSLDIQINTQIPDTEEGVLVECTAESLFPPAEMTWRDSKGNIIPPSSTFDSQDRAGLLCLKSTILLKNRTEGPITCSIYNKTTNQEKRRSIILSDVLFRPQYMSLMSNNLLYLGIYLIFILFLNFLKGILFCLTKRLVHFRKRMIKIKKVWSNKTRACCPLIWEFLEIVLFIAFLPLYLMFRIRVFTLDEAHILYNNWLWKVCKTLIAMMILFTVLILFLLWTLNRYGKMPCLSSMNIDVSTHDAEQNSSKSAKFQENYDVAGQMILETYEETIFCQHQESCEEYNYDPLLLSSLDALGTCEDEKFSQHQESFEEDEDLQSFSDFKIELYSKLGNLTH", "length": 364 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B0BMZ6-1", "protein_name": "Cilia- and flagella-associated protein 119", "gene_name": "Cfap119", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MITPRSSQSLEMKVQTELEHSPKLQEEPDRSPSLVDSSVIRIGTDEQNESPAEATSSPVEVAEDPGANLFPPPLPQPRICMWKYLDIHSMHRLEKAATVEEMREVLAELLELGGPEQSLRDAIILDLFSHALIFCRQQGFSLEQTSAACALLQDLHKACVATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALADYVVNTYFRHFKLYKYVFTPQVRLDLSLSYMGLQSLHLWPEEKEDEEATVEQAATPQEEEPEAVTEAEQQPSEVCILQTYIKCQLNKELRQLQQLVEERLKESEERLSNRLAALERPYQTPPSKGKSKAK", "length": 332 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0G0Z9-1", "protein_name": "Probable polyketide synthase 6", "gene_name": "pks6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLKNIDLIEKGVAIVGIGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSEASLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGASNIDYQHTNKHQDSVLKNAIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSDISIVGGVNLILDVEMTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECVGVVVLKNLQDAIKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSAPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTAIQIYSKSNYLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQSTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNLNIELPLYQWSDELYFAQNQVLEQHRKGGPPIDHLGLSNSYYSPFKNSYKTLIDINYKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDHKSNEWIQSSNSNFQLLDHGNDIPSNYNIKEIIKNKCNLSKLTKNELYKNIKSKTGLNYTGVFQGVTECYIGDNCTLSVVSLESQTNSFLNIPILDTCLHGMLILINDQCQIVFDKAIGFKYYSSNIPADFKENKDSFYVYSNLRPRVGGDSYHGTIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFQSSLNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSFEEKDDTYFEFNKVIIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKIYKCSYLRKKNQVISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYHPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLTTNGQLVFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCGMPQQSWYQLLNSCNFKDIVMSKECIFFGSVIQAQKPPISLLNSQPKYDNIIIYGGSINSSFVENIKLDSNSKSLFQIETIQEFNKLISKSTITNDSIVYFIKTLETLSLDNFKQITLEYIEINQKLLQINSLCKHVLIVSDSRKTNYLASSAIGAARYFDEFPLLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKKIQIKPSKISHIEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGRDGFGLSTFEILKWKGFKSNLFVTVNSDKTKQYLLKKYGDLITGIYSNTDKSYVAEIKNKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLTKYGRIIDLNSNHLNQSEFLKNINFKYNHGYHNFELSLFQKNKILKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINDILNENQQIRNIDSIFHFAFQQIACKVQEINMKHLNISHGAKSMGAINLHNQSIKRNWKLINFVMASSALSFIDSTDQCTYACANTLLDSFSKYRVSLGLPSTCINLGLIESTGFVSKNESISVFLDGNGIIPTPINRVLGLLDLQIQNASKFTNSMISNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQNKYLPSNRIDYWKNEMKFEESIKPIPNEIRSRNNNSGKIILLTGTTGFLGGFLLFNMLRLDSCKLIYCLIRNKSKSSYPLDEIINNLKYHQLYEKLNKSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKNYNIPSILIRPPSIFLNPETGIGHSSDLTLLMIQSCYELGYCPNQILNGFILINTITWLSNNITNIIMNDNCWTNSKMNIYNVHGKQIQSSLIIKPLEKHFNCKQINNNDWIDMVNNSNKKSCIKLKSFHSLENIFKSENKGYKSNESQSISLSTKSLLESMGSYNTDLKITDKMIISHIKHIFK", "length": 2924 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G100-1", "protein_name": "Probable polyketide synthase 7", "gene_name": "pks7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNFKNINLIEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYLHTNKHQDSVLKNVIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAISQGYHSILNGTSDISIVGGVNLILDVETTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECAGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNEKLSVNEIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRKNEKPVSMMINNFGVTGSNCCLLISEFKKQDYEPYENNYKSNNKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLCQRSVIAASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLINSKLSKYYGYSVLEKLRSIGDDDTTSIHDPNISQPAVCMISVSLFELYCHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYHRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSVLKLNIQSNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIINPVRFTQTISNIYKHIESNQLNNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNKKIDLPLYQWSDETYFAQTQTLEQHREEGPPIDHLGISNSFISPFNNSYKTLIDINNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNQWTQSSNSNFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTHIKSKTGLNYTGVFKGVTECYIGDNCSLSVVSLESQTNSFLNIPILDTCLHGMLVLINDQCQIVFDKTIGFKYYSSNIPAYFKENKDCFYVYSHLKSKSADSYHGSIIVMLSDGSVLYEIQEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSQIPTPSYFKSIIYENDSFHSIVNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKFYKCNNFKKKNQIISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYLPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQVVEQMYQLLTPNGQLVFVEPPYKSILIDSIVGSFDQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDIVMSKECIFGSVIQAQKPPISLLNSQPKHDNIIIYGGGNNSRFFENIKLYSNSKSLIQIETIQEFNQFINKSTITNDSIIYFIKTLETLSLDNFAQITLEYIEINKKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSKISHIEASSIPIDYLASFISLFNVGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFKSNLFVTVNSDETKQYLLDRYGDFISGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKNARIIDLTSNHLNQSEFLKNINFKYNHSYHNFQLSLFQKNKIQKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSIDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYACANTLLDSFSKYRVSLGLPSACINFGSIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQCGREI", "length": 2513 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G101-1", "protein_name": "Probable polyketide synthase 8/35", "gene_name": "pks8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLEIINLIDKGVAIVGVGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSDAHQIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYQHINKHQDSVLKNVIAQSAYAVSNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVGMIKAYSYLSMLSKTHGKCKAFDESGDGFTRGECATIVVLKNLQDAVKDGNRIYCVINGSSSNVDGGGHMDKVNLYSPSKQSQFNNINSAFKSTNGKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRINEKPVSMMINNFGVTGSNCCLLISEFKKQDYESYENNNNNKSNHKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLYQRSVVIASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNDEIFKKSIDLIDSKLSKYYGYSVWGKLTTIKDDDLTSIHDPIFAQPALCMLSVSLFEIYCHWGVNPSFILGHSLGEISAAYCSGMIDLDTFCYTVYYRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNDIVFIEIAPHPTISFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYSINFKCQLENKKSNQSINLPLYQWDDELYFAQTQTLEQYTKEGPPIDHLGLSNSYYSPFKNSYRTFIDINNKPFQYLKGHMVKGKYYFPGCGYIDIIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTQIKSKTGLNYTGVFQGATECYLGNDCSLSVLSLKSQTNSFLNIPILDTCLHGMLVLINDQSQIVFDKAIGFKYYSSNIPSDLKEYKDSIYVYSNLKPKNADSYHGSIIVMLSDGSVLYEIQEVIFKSLIPIKHSLKIEYPNDELYKVHLQSKDSQIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKNQRLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSKIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCSYLRKKYQMISHVIIHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYRSLTIDESLLENQAIKPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFIEPPYKSVLIDSIIGSFEQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDILMSKECIFVGSVIHAQKPPISLLNSQPKHDNIIIYGGGGNLSFVENIKLDSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNYKQITLEYIEINQRLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILVDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNNNNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSNISHNEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVDLDETKQYLLDRYGDFITGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKSGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFQLSLIQKNKIQKCLYEISHAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAVNLHNQSIKRNWKLINFVMASSALSLIGSTDQCTYACANLLLDSFSKYRESLGLPSACINLGSIESTGFVSKNESISEFTDGIGYVPTPINLVLGLLDLQIQNAGKFTNSMLSNLISSKFKNIQQTSLFLKFDYLMNLNDNSEQTKKENIGNKNIDELFIEKVSELFSTDQSRINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIKQLQNNTINISIKMILNSLMKNNQI", "length": 2514 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G110-1", "protein_name": "Acyl-coenzyme A oxidase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKNRIEIIKKHLEVNNSQTTNNKDEVLEKELFNSIDTNINVGELKLLIDSVEESKYKDETREFIRNHPKFKENFIGLDMATYRQLVLEQCAAIANRGLIHFTDIKNNLHRYIGALEMFALYNNNILTKLSVQYTLFGGPIIFLGTSRHEKYIEDANTLKTMGCFAMTEIGHGSNVRGIETTAHYDKQTKEFIIHSPTPTSEKFWIGCAYLHATYAVVFANLIIDGTNYGIHAFIVPLRCPKSGAIMKGITIKDCGHKLGLNGIDNGQIRFDQVRIPRENLLNKYSDVSEDGVYKSQFNTPIKNFAATMSPFIVGRMAITKGCSGAAKTSLSIAIEFSHIRKQFGPSSNKELPLITLSSQQRRLMAPLARTILFDLYIQRLTNELCQEKLPASIHAHCSGIKAVYSWFCVAALQTCREACGGQGYRSANRIAEFKNDCDIICTYEGDNTVLMQQLAKYLLGVKQKQTNTTTNRIYLDGEDAKSLFFNFSNINQLFETREEMRLAELKQIIDNSKESAYFAFNNAIPWAVKLGFAHMTKIVFQNSINTLKLKNVKPLTHLIMLDALVSIEEDLGWFVSNHLISPNVAQSIPFLIQDLCFEVTKVSKQIIASFDIPENCKPSSKDLISDLF", "length": 629 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G138-1", "protein_name": "Probable polyketide synthase 21", "gene_name": "pks21", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLENKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSIAMGFQSIQNGTSNLSIVGGVSLLLDPYISKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSKTSTPSKPLLIGSLKSNIGHSEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNNNEKPVSMVINNFGVTGSNCCLILSQFIEQSINQNGNGHSYPAESQQQQQQRFLIPFSANSVKSLKNYEDLIINDIKISTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTNNDKSSNITIKRNQPLVVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLNLKENNIFCAFLGSLSSFHTSSQHSTKNEILPLDIPSKQSRIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDVNFKCQFNHNDDDVSSIRNSKVNISLPNYQFDEQHYWKVDINFEQYRLNGPNVFNSLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNQDIIINNLEFLAPFVLKENVKHTLQTNVYQLGNTDYRVTFNIKDNKTNQWVQTCTGNFQLISLKDNNNDHSSKYDINQLLSECNFTTLSKQEVYKHSRSITGITHLGAFQGIEELYFGNDCIISKIQVNTENFDIDGKPVYQTYDKSFFNTALLDSCSQTIVGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLESDSYKSSVLVLLEDGTKLLEMDCISLHSTLPLLNSLLINNPTTELFTNNLQCKDSLVNILSIDNNQTFSSISSSNTVTEIIKQTIKPIINEKIVFRILQSFSDLELSKQIIETLNQIFDDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDGDDETIIKSIFNILSSNGLLLIIGDDIGDKYNIDSLINLGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKESKYTNEFMKLISNNHISCKQTIISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGTARYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNQIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISNENQNCEFKVGDNVFGIACDTTASHVIADVLYVSHKPENISHVEAASLPVIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIELMHINKKVVSRLLKSISNALNENKLKPIPITTFQIEDVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVGDPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCSYVSANLVLDSLSRYRKSIGLPSTCTNWGAIKSAGFVSRNELVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKNSNLIVSKFNYDSIKKLSSETSTFQRLDFILNSIKEKDNDSNGGENSVSESIQTKILNKISELLSIEQSKINTDIRLSDYGADSLTSVQLKNFIDKDIKSNVITLQQLQNNTIDMNIQTILEQIKKLDSNETKGKSKNIIKKDSAPTLDYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKIKVIVGNLASPLLGLSKLDFDYISNQINLIINSGADINLASNYEESKVVNIGGFIELIKLSTTGDYQKPIVGFSSVSVFFNASNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLLREVAKRGIPSMLIRPPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPKIDKNILTSPIGWISLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSAMNPSFSFLEKQYGCEMVEYEQWKNIINQSKILSCVKLKTFHSLDDLYNIYNLGNGFGVSKKTKELLQSMNSYEGGMVNEKMIQNHINYIFKN", "length": 2779 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G149-1", "protein_name": "Transmembrane protein 184F", "gene_name": "tmem184F", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSHINIIYIIWILLFFFTCLISFFLVNRHLVNYSSPNVQKNVVRIVMFLPLNSGLSILSSIFPGIAIFNSLVRNCYMAFTAHCFFSMMTNSIGEKNMLDLFESQGKMKFLCCKVMKLNRKLFNTLRFGSIQFFIVKIFCSIATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKYRIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIYSYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENGDKKPKKNIEDQNQENSNDQPLSIQMA", "length": 348 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G188-1", "protein_name": "GATA zinc finger domain-containing protein 16", "gene_name": "gtaP", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSYQIQNQPYQQIQNTHPSFQQVQPMQVPHLQQQQQHQTMIAQQQHTPPQQHTPPQMNMIQQHTQPMLSQPQISLQMQPPSPILASQQQQQHMQSSPILASSNLTNSNNASQTTLPIITSKLLLKKEPIDQEVVNSTHKTTTTNNKPPKQSKRKEKERLEEEKQTVAQQQQYQPPFIPLASNESNSDNPFKGSHAYGVSTTPYGNSQFNNNNNNNNNNNNNNNNSNNNSNNNNGNNNINNNNNNSNNNNNNNSNNNNNNSNNNNGNNNNNNNNNNNNNNNNHNTNNNNSNSNNNNNNGYQQDKKDDYSMMIWSEVGRKINILIRTTSKATKGTPISTQEIAEAIGASNGVTADLVELIKSINDPTYVRKLPPSSISNTPTMGSQSGGMVYNSSPMLSPSTMSPILQHGNYQMGGDMYFGGNNQFSGDKQSALNNVKNSKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVTNTPEWRRGPNGAKTLCNACGLAWAKSVKSEKQKELLANSTGVNITEPKKAQKRKKESSDNNNNNNNSSDSNKVLKSDDGSNNTNLTNDDDNGYPSSPNSSNSTSPSSHNINNNNNNNNNNNNNNNNNNNNNNNNNNNNIGNNNNNNINNNNTTNSITTPTTTPFPTTIPAMQIVSQLPVMVPQTQQQPHMSGNIISFQALHQNSGYQHYK", "length": 695 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0R191-1", "protein_name": "C-X-C motif chemokine 11-6", "gene_name": "cxcl11.6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKTLAAFLLLSCLIAGEVNGQDRSSRARCFCVDKGLNMVLLKNLDKVEIFPPSPSCNKHEIVVTLKNGAGQKCLNPDSKFTKNVVLKAIGKRMQQSVPHSTTTGTVKSSMTSSTSAPTAFK", "length": 121 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B1AV09-1", "protein_name": "Leucine zipper protein 4", "gene_name": "Luzp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHYSRRSRNRFRRAPVHSERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIDHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESLDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AY40-1", "protein_name": "SSX member B8", "gene_name": "Ssxb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSFCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMSGKEQDKQSLVEGIEVHDSEDECFEGSFGVTPIKQMKLTPVTISIHNVEGSLASGENNSNLAETSGIQVNVWSHRLRERKYRVIYEEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AYI3-1", "protein_name": "Predicted gene 13272", "gene_name": "Gm13287", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNITPMTLGETTSCYSQTLRQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AZM5-1", "protein_name": "Predicted gene 12886", "gene_name": "Gm12886", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLPCSLWLLSVCLLSWCCDAKLPVALDPESESVPKPPVLKTATEIAAIVVFMKTSNETPKSGTYGQSLQDGKNKIKDVEKEVLDACSQLCQSLAQDPNLHHGYILRAYFKEHQFLCCF", "length": 119 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1B0R2-1", "protein_name": "Spindlin family, member 2D", "gene_name": "Spin2d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSKLTKKRAGRKRQRSRSPALPKRNIVGCRISHKWKEGDEHITQWNGTVLDQVPVNPSLYLVKYDGIDSVHALELYKDKRVLSLKVISKRVVSSGVTDSSFADAIVGKEVNHLFEGEHGSKEEWRGMVLSQAPILDNSFYITYERDPILYTYQLLDDFKEGDLQIMEGFSDPPSLDIDLELVDGLIGKHVEYTNDDGSKRDGLIIYQIETKPRVYLVKYEDDVHIHVTHLEKEL", "length": 236 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B4F7F0-1", "protein_name": "Claudin", "gene_name": "Cldn6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV", "length": 219 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B7ZW38-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 3", "gene_name": "HNRNPCL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS", "length": 293 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B8JKF6-1", "protein_name": "BTB domain containing 35, family member 13", "gene_name": "Btbd35f13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRFLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGAINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD1-1", "protein_name": "Spermatogenesis-associated protein 31F1B", "gene_name": "Spata31f1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD2-1", "protein_name": "Spermatogenesis-associated protein 31F1C", "gene_name": "Spata31f1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD3-1", "protein_name": "Spermatogenesis-associated protein 31F1D", "gene_name": "Spata31f1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HLM6-1", "protein_name": "Small integral membrane protein 20", "gene_name": "Smim20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAARNLRTALIFGGFISMVGAAFYPIYFRPLLRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK", "length": 69 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C7G009-1", "protein_name": "Thioredoxin fold domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLILNGNWLVKFGAGWSGHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEYESICIKYNIIGYPSLVFFDEGEIKHYRGPRLFENFKEAIDKHLNKEFVAFSQNQPSKIIVITNENLDLLLTGNWLVKFGAAWSLHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEDNSICKKYNITGYPSLVFFNEGQIKHYTGPRQFENFKEAIDKHFKYGVKWSGHCKKFQPVLENLAQHYNSDIENSKIKVAQVHCEGDDSICKKYNITGYPSLVFFDEGETKPYRGLREFDKIKEATDKHFK", "length": 303 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G010-1", "protein_name": "Calcineurin-like phosphoesterase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLKIKFSIISLFILKLVISKPILKFNNNNQFKIIQFTDLHYGSEPVDDIDTIFSQVNILDYEKPDLVILSGDMVTGYEEQFEDDDRNYWKYWNVFTRPFVERNIPWAITFGNHDGEGALSTNEILKIDQTFNLSLSQSNPVEMHGIANYVLKISSSNSLKSEPASLVYIFDSSTKGCSKLDWGCVHQDQVDWFKNTSKSFNKTDSIAFVHIPPVEIIDLWNNYPVYGNYSETSCCFDNDYGDFVSSLVESGDVHGLYFGHDHENDFHGDYKGVDLGYGRKSGAGSYSSKKPLGARVFQLTESPFTLSTWIREEDGNIVSQVIHPPSEFDRKPLQCKMKDKYSKKELIAIKVIGGFLIFLGIVVVGLIGFFGFKHYKKFKKQTLEMQNLV", "length": 390 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G064-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKDEKQFQQFPNKGRTVQANTDLPKGSTVFRCAPFASSIEDSDKLATEKYCGFCLQRIPKSDSKECLCKNCKLYSVCKSCRSINESAVEPFQIIIKSTFHLGSDTRDMRLLLRIIANIANGKQGMQTPIDDYQDFMGLTSTLDKVDKEHMTKFKRGVTSISSLISSVRGVGYLKNTITIHEILECFSSVLTNAHQFSYATSKEIGRGVCPTGYFNHSCMPNTTWSLDDQGMLLFSTSSNVKKGDELSLGYLANEYPLKNRRRELLDGYYFFCQCPLCEFQSNLSGYLCEKCKEPLLNDSIVYHEPSLTNPLDTGIGLIKHLRKMIDFRQQSVEFKKMFSSEQLSNILQKGVPKHIQSVFNCDASDNEELQQIVEISERSIKSLPLINGEPIDFYPLSDRNYYEYFKQLKNSKISSPEELQRIKDKILSLINPTIYNSFKDKIDKRLLI", "length": 449 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C9JPN9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 12", "gene_name": "USP17L12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLKLSSTTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3YTW8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r258", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSIHQFVILVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAESRATQTILIVVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNL", "length": 314 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTX5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r259", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY1-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r107", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLDFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r138", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YXI8-1", "protein_name": "Predicted gene 10377", "gene_name": "Gm10376", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQAGSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQNNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKILCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAVMSNPCA", "length": 184 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYI9-1", "protein_name": "Predicted gene 7347", "gene_name": "Gm7347", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYY1-1", "protein_name": "Secretoglobin, family 2B, member 7", "gene_name": "Scgb2b7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACFPFFEAYASVLSGSRVWLYQELQAFDATAEEKVALEKIQDCYSEESIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z236-1", "protein_name": "Predicted gene 3676", "gene_name": "Gm3676", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQTVSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQHNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKTLCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAAMSNPCA", "length": 184 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z8D1-1", "protein_name": "SIGLEC family like 1", "gene_name": "Siglecl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLWGLRSLLLLHLGFLSPVLVDTKKTAVEDGLCSTVPCVIEFSKAPLRKPMIVSYRLNENISFHAGTSQPRGPVADLSTEEVEYCILLTHNMLGRKNMTYSLYVGLGAQKDLTQKQELHIPGSSMAGEPVSLTCTIHSTCQESKALFLSWKGPIMSSSTTVPINPSSALAIDPKPEDQDTTLRCHLKLSLDNLSSSKVVKLQLVSPARLLNYSCLLKRTLTCSCSFHGIPTPSVQWWVGRTPVSVNSIDAILHMTSTTLESWTNSTIHLMWEPEIIKSLRCEGKNQYGVHASGIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFFFFLVVLGMKILNWWEENQTCKNEEAPTLKKPVWGGAKPAEVGS", "length": 369 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z8T0-1", "protein_name": "High mobility group nucleosomal binding domain 2, pseudo 3", "gene_name": "AABR07053402.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAERDAQGDEAKAKDEPQRRSARLSAKPAPSKPKKAPAKKREKIPKRKERKADAGKDANNPAENRDAKTGQAQKAEGAGVAK", "length": 86 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z9U8-1", "protein_name": "S100 calcium binding protein A7 like 2", "gene_name": "S100a7l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSSEQEVMKLFDLFQNYHVRRTDKLDVQETKRVLREFFPNFMKALNASGIKILNDLEKEITLDEIWDMIGRMAMAYNKKNSNALKD", "length": 91 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZAM9-1", "protein_name": "Olfactory receptor", "gene_name": "Or4f60b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKVNYSVTSEFVFLGFTNSWDIQLLLFLVSSMFYVACIMGNCLIIFTVASDTHLHSPMYFLLANLSFIDVGISSATSPKMISDLLKKHKVISFRGCVIQIFFNQAIGGAEMVLLIAMAFDRYVAICKPLHYLTMMSPQMCLFFLITAWVVGLMHSVIQLIFIVNLPLCGPNILDSFFCDLPQFIKLACMNTYRLELLVSISSGFMSLVSFFLLSISYIVIILTVLKHSSSGAYKALSTLSAHVTVVVLFFGPAIFFYIWPSSTHLDKFLVLFDAVVTPFLNPVIYTLRNKEMKRAMRRVFRHLMGYRQIS", "length": 311 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZC26-1", "protein_name": "Ferritin", "gene_name": "Fthl17fl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEDAINNHIRLLLQASYSYLSMAFYFDRDDVALGNFKRFFLSKSHNCKASAEMFVFMQNKRGGHVFLPSIAKPDRESWHGGLRAMECAFRMEMTINQSLLNMHELAKGKDDAHLCDFLGQHCLDQQVHVLKKMGGYLTNLRQMGAPEQGLAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCM9-1", "protein_name": "Dynein axonemal assembly factor 3", "gene_name": "Dnaaf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTPAGSGNGFGTVSWWGLSPALDLQAESPPVDPDSQSKTEHKIPELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLELWGNALLRPSVAAFLRAQASHLSNLVPEPDRLEELLPWLSLRPLKFRERDALEAVFRFWSGGEKGPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRWRDTGVAFELRDLSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHNVTELFRDVAAWRGPRAIKGNVEETKSPEPDAPAQEPFTIHFLPLDSSQTLHHKTCYRGRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPPQADLAPPPEVISPVQEALAMSSAIAPLKHVT", "length": 583 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCW3-1", "protein_name": "SPATA31 subfamily E, member 1", "gene_name": "Spata31e1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METFLLLMNSISDFWMSSSSMSTVMDMIFAILCGVGFFFLLIPFLKEYPGSPPPGSKKNISEVVKRRQSKDRKKSVTVDGCRDSQKNSLDIQHDLQTMESPIQHLLLDSSPHPFWNSKEKLNQLSLPQLFSYLKVLEALIQQKFNQLLLGLSSVLSESVVATAWVSREPSSGERKTVRFSDSLGFDQALPLAKGPPQRCLDQPLPHQLVTPSLVGMTEIQEQENLPNSISYQTPSIFQSRARGTAYPTTATGIQVPLPTTNEPCHPGLNWKDIPSCKVQNCQGASSQPTESLARCTLPTKNTRSASIPPEHYLMVHHHEQPQHEEKAINLGEQQRTHARFLPSKEPAQLQGDSPPNSNGYGKNWPELNQPAQPSTLNSKTYKWNQMMGPVPTGMLLKKVIAKYGIPNTIKKDLKLRVKDLLCTSSSTPGESLETKNLTLRTDEHSMNTTENLSFLDPKTTMMKSNIMQLPMKHRQLPCDSKAEPYTKAAFILENLHHQDPGGIRVETASSARLRSPLFEQSPPEVQKTQSSPPPIDSHGHSRSHPDQWQRYQSVQPHALCSQAQPQQSRSIQGTGRSILQPNISVWMSKHERWMRSEDVASGHTSWSSRTVGYRDRVSPSVAKQTNILKIKEESPHVWRANLGSGEITNEQALNNSNEDFEPIEAKRSQGHLQMPTQQNTGYLHLKTEEYSNNDLKVNKQPQAWSVSHHADGSNTVHHAMVKLPSQHSLPSLQNGWQDPKTSQGLGDLLMNRDQSVETQFRVHKDKTEATNDSVFHPSEKRPSNLKYGGISQGERLGRVKSSISSFTQLKDSAKTESKSSPNIGGKREAPSKSSLKFIWNGAQYENLSTKLKGQRDSLKKDIPPPVTEQTQEVVHRINVIYSTAVELQSLMDSLVHKLVKTVGEPSELTRKHMTKVQEYKMESLPFQLGSSSQPSKGLHDPNKSRSVRRMSDDHTSPKEPNNHTFTYRGNRDKMQAGVDVQRVCYQHLDKVKIGFGQHSTPMRNGNPCFHKKAGDKQESSLADQSTGDADQTKPKNEIVGSPHRIPERHNQSSRYREIRDNQEPSVDHKAIDPHQNTKKGMGYSQLMSPKENHPVKISGTAAQGASDPEEIRTKSGKECSPHRSPKMHDHSLRHREVRDKPQPGINTQRAYDQHLNSPKKRMTSENLLTPKGTNHPCWHRVTGDKQQSSLSDQRACDPEQMRRSGMSSYPQRSPKVYHLSCSSEKIGEKLLPLVNDQRTHDKHPNSVKTRGCDNLPTPKGSNHPQGYRVIEDKQQLGLAYRRTCDPGQIKKSGMGKGPCKDTEECNLLYRYKIIGNKQQPGIVHRACDRHQSSKEGMGQGQPMNPKVCHSAKHRRTGGQDQSGVAAQGASNPR", "length": 1373 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDD6-1", "protein_name": "Synaptonemal complex central element protein 3", "gene_name": "Syce3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQELLTETKRKQ", "length": 88 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDJ1-1", "protein_name": "Olfactory receptor", "gene_name": "Or13c3f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDDMDKNNQTFVSEFLLLGLSGYPKTEILYFVIVLVMYLVILTGNGVLIIASIFDSHLHTPMYFFLGNLSFLDICYTTSSVPSTLVSLISKKRNISFSGCTVQMFVGFAMGSTECLLLGMMAFDRYVAICNPLRYSVIMSKEVYVSMASASWFSGGINSVVQTSLAMRLPFCGNNVINHFTCEVLAVLKLACADISLNIVTMVISNMAFLVLPLLLIFFSYVFILYTILRMNSASGRRKAFSTCSAHLTVVVIFYGTIFSMYAKPKSQDLTGKDKFQTSDKIISLFYGVVTPMLNPIIYSLRNKDVKAAVKYILKQKYIP", "length": 320 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDT4-1", "protein_name": "Transmembrane protein 92-like", "gene_name": "LOC100364194", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQEAWVLDALTVIFGLLFSLQGVSSNKTIYKCEDIHCPKGFRCCDNECCLERKIWNTDNEPFRILFIILLVMLPLLCICGLVRRFCPKCRELQHEVRTADHQSPPDPPSIAPLESIWVTSLDPPPPYSQVVQKSTPTEPPPPYSLRPEDSTCPMRETSHETL", "length": 162 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFJ9-1", "protein_name": "Family with sequence similarity 24 member B", "gene_name": "Fam24b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSSFDLRTIIMIVIGSGILAAMFLLTGVVLCLYSKIARALNPSGTGKELDDQLCSDPCKTTQDQIIRVNSLNADTCRPFHGSTIGLENCQPLQCFSACGTYEGANSLTPCLCNTKEGL", "length": 119 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFW5-1", "protein_name": "Transmembrane protein 107", "gene_name": "Tmem107", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRISGLVPSRFLTLLAHLVIVITLFWSRESNIQACLPLKFTPEEYEKQDNQLVAALCLTLGLFAVELAGFLSGVSMFNSTQSLLSIAAHCSASVALSFFIFERWECTTYWYIFAFCSAFPAVTETALFIAVFGLKKKPF", "length": 140 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZG05-1", "protein_name": "40S ribosomal protein S12", "gene_name": "LOC120100003", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEEGIAAGGVMDINTALQEVPKTALIHDGLARGICEAAKALDKRQGHLCVLASNYDEPMYVKLVAALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFEYKK", "length": 132 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGM7-1", "protein_name": "Peptidase inhibitor 16", "gene_name": "Pi16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNCRVSWMPQHSSAAVSGICPPQEGPWSSYSLWPEPPLLREKEAVAKDSRGVDSTLVQTQGTQPSWRHCVSWAGPPDTAPAAPPQPGWCLCGKDFKSSRQTPDRERQRGLATMHSSCSPWVMLPQLPLLLLLLLLLLTATGPATALTEDEKQTMVELHNHYRAQVSPPASDMLQMRWDDELAAFAKAYAQKCVWGHNKERGRRGENLFAITDEGMDVPLAVGNWHEEHEYYNLSTATCDPGQMCGHYTQVVWSKTERIGCGSHFCETLQGVEEANIHLLVCNYEPPGNVKGRKPYQEGTPCSQCPLGYSCVNSLCEPERKPEKAQDSPPRVTEVPGSRETGIPSLATSESLHFSSVTKVSDSLATEPSPAVETKAPPSLATEGPSSMATEAQSFLTEVPSVSATHIQPSLDEGPVNFLTSTHIPVPKSTDKEASSKSRAASVSPEKSLYPKMSPTETGESPPQIQEEAEPKAELPEREDELPEAEVELPEAEAELPEAKAELPVSSEALVPVLPAQERGGPKASLEHSSYPVPTYLPNFPSASGNATGGRTLALQSSRTGAEDPEKASWDSKNSAPVWGPFPGLLLPLLLLAGIF", "length": 596 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGX2-1", "protein_name": "C-type lectin domain family 2, member M", "gene_name": "Clec2m", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTESSLRLSQSSHHRLTFDLKKVVTLWILVIGVIAVLLWGFFSFPKKFTVTRQTKNEVCSDGVKICLHGWNKLNRNCFTHFSHANSWFTAKETCKFHDATLAVFNDQTELDIVMKQMEDIQTFWIGLYKKDFRGPWVWTNGSKYNNWYEVQDYGHCAFLHKSGIDSTNCNDLKEYICTQEGHCP", "length": 185 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZIZ8-1", "protein_name": "Ferritin", "gene_name": "RGD1560203", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEEAVNTHIRLLLQASYSYLSMAFYFDRDDVALENFKRFFLSKSHDCKASVEMFVFMQNKRGGHVFLPSIAKPDRKSWQGGFRAMECAFRMEMTINQSLLNLHELAKGKGDAHLCNFLGQHCLDQQVHVLKKIGGYLTNLRQMGAPEQALAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKK4-1", "protein_name": "Zinc finger protein 869", "gene_name": "Zfp869", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTPIVGLSSPDQGLVSFEDLVVHFTQDEWDLLEASQKSLYGDVMLETFRNLTAVGYEWEDEAIEDHCEEPEVNLRDIVSHSEYTHEYEHKEYEEKPPDANFLTSVEGCVETKTSSGPSVCEVCLKTFGLYHLTYNGHHNYDYKELRGSQTEENDCEGNSCDKTSGSLQKEDKIHTGKKLYVCQECGKAFRYPSALQLHERIHTGEKPYECKDCGKAFRGLSALHLHERIHTGEKPYECKQCGRAFTYLSALQLHERIHTEERPCECKQCGKTFRYSRALKLHERIHTGEKPYECKQCGKFFRSHRTLKLHKRIHTGEKPYECKECGKAFRWLTSLKLHEKIHTGEKPYECQECGKAFRCQASYHRHKITHGGETLYECKECGKSFIYPSLLQVHERTHTGEKPFECKLCGKAFRCQSSLRLHERTHTGEKPYECKHCGKAFSSYNYLRFHERSHTGEKPYECKECGKTFTHRSYLRSHERRHTGEKPYQCIQCGRSFSRHSSFKRHQSVHGESPYEQYLIPLSPFSSKE", "length": 530 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKM3-1", "protein_name": "Protein GPR15LG", "gene_name": "Gpr15lg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLTLSGLFFMLFLCLCVLSSEGRKRPAKFPKLRPCCHLSPRSKPITWKGNHTRPCRPCRKLESNSWVVPGALPQI", "length": 77 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZL22-1", "protein_name": "Olfactory receptor", "gene_name": "Or1x2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKWGENETGVIEFLLLGITNDPQQQRILFWAFLCMYLVTVAGNTLIFLAISSDPHLHTPMYFFLANLSFDDVCFTTNIIPRLLAGHVSGTETISYAYCLTQMYFLISFGNVDTFLLAAMALDRFVAICYPLQYHTIITPRLCVGLASVVWISSGLIALVHTLLMSRLTFCSSIPEISHFYCDAYLLMKLACSDTRINQLVFLGAVVFFVAPCILIVFSYVRIAMAVFQIPSAKGRHKAFSTCSSHLTVVILFYGTVLGIYIRPPDSFSTQDTVATIMFTVVTPMLNPFIYSLRNKDMKETVTRLLHRGSKSS", "length": 313 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZLG9-1", "protein_name": "N-terminal Ras-GEF domain-containing protein", "gene_name": "AABR07047293.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSCCVWTTEGSGLKKDKNEGQGGTWKFMLLSCLQCLWPFAQKEIDLTRDNQAQDHEDQGEHEYAPQVVTEPCRESRISADMVENLVNRLVSSLQGGDPFFIPAFLYGYRQFTTTQHVLDRLLKRFAYFYLGCEEDEQIKSSLCCFLDTWIDQYPEEFSQTILKKLKTYLTVNMPSSDLNLRVHMLLKELRQESNESEGKDDDSVSLPVTLLYKTASAADLSSSVEVGSHTSGDLDIEVWFPSQKVQPEPAYPHETETPQSTIKVISWD", "length": 269 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZMT2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "Ndufa3-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRSSDFFKNAQAKEPVLVVSFSVWGLAVILPMISPYIKYAGVISKATPYNCPVPVRDNGNVPGVPSQPQERLSPSLERLKNL", "length": 84 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNA3-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "AABR07049918.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQETKNVVNPLFEKRSKNFGIGQDIQPKRDLTRFVKWPHYIRLQWQRAILYKQVKVPPAINQFLQALVRQTVTQLLKLAHKYRPETKQEKKQRLLAHAEKKAAGKGDVPTERPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKMGVPYCIIRGKARLGRLVHRKTCTTVAFTQVNSKDKGALAKLVEAIRTNYDDRYDEIRCHWGGNVLGPKSVARIAKLEKVKAKEFATKLG", "length": 266 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNR1-1", "protein_name": "Elongin-B", "gene_name": "Elobl9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVFLMIRRKKTTIFIEAQELTTVLELKRIVQGILKRPPEEQLLFKDDQLLDESKTLRDCGFTSRVAKAQDPATVGLVFREDASEGLQIHPYSTPLLPSVMKTGTDSLE", "length": 109 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNU6-1", "protein_name": "Olfactory receptor", "gene_name": "Or5p66b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSWLENGNHTTVAEFLLLGLTDDPVLRVILFTIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLASVDIGYSSSVTPNMLVNFLVERNIISYLGCGIQLSLVAFFGAAECFLLAAMAYDRFMAICNPLLYSTKMSTQVCILLVVASYIGGFLNASFAMVSFCSFLFCGPNIINHFFCDFAPLIELSCSDVSVYVIATSFSAGSVTMITALVIAISYSYILITILKMHSTEGRQKAFSTCTSHLTAVTLFYGTVTFIYVMPKSSFSIDQNKIVSVFYLLVIPMLNPLIYSLRNNEIKSALKKQIWRKTVS", "length": 314 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZPU6-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC134485591", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRSTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAEGIIVNKQVKGKILTKRINVRIEHIKHSKSRDSFLKRVKENDQKEKEAKEKGTWVPLKRQPAPPREAHFVRTNGKEPERLEPSPYGFMA", "length": 160 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQ96-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC102550668", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKVKRRGTRYVFSRPFRKHGVVPLVTYMRLYKKGDIVDIKGMGAAQKGMTHKCYHGKTVRVYNVTQHAVGIIVNKQVKGKILAKRINVWIEHIKHSKSRDSFLKQVKENDQKKEEAKEKGTWVQLSLQPAPPREAHFVRTNGKEPELLEPVP", "length": 155 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQD9-1", "protein_name": "Developmental pluripotency-associated protein 3-like", "gene_name": "LOC120096627", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKSSEKVDPVVNPETQMNDGSQREDEEDSPDDSEILQPETLVKVMKKLTLNPSAKPPKYHRHQRVRLRIKSQPVGNRSERIMREVQSAFPKTRVRTLLSVLKDPIARMRRFVRIEQRQRQLEGNERRDEPFRCLCTFCHYQRWDPSENAKIGQNQKN", "length": 158 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQT0-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "AABR07071101.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILCIKPSSTTKYCLNQCYLISCINKPNLLDGVNGIPLDIVAINDPFIDLNYVVYMFQYDSTHGKFNGTVKAENGKLVINGKPTTIFQERDLANIKWGDADAKYVMESTGIFTTMEKAGAHLKGGTKMVIISAPLADAPILKYDNSLKIVSNASYTTNCLAPLTKVIHDNFGIVEGLMTTVHTITATQKIVDGPSGKLWRGGHGAAQNINPETTGVAKAVGKVIPELNGKLTGIAFHVLTPNVSVVDLTCHLKKPAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSNSHSSTFDARTGIALNDNFVKLISWCDNEYGYSNRVVDLMAYMASKE", "length": 338 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZTK7-1", "protein_name": "Uncharacterized protein", "gene_name": "AABR07012426.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGDLEAKISGYTHISVQRFCYKWTISNFSFCMDGIRENITSPVFSLEGNEEVQWCLRIFPNGVDEESKDYLSVSLGLHSCPKSPVLAKVQFWIINAQGEKHQIKEIPNILSFSPKHQWGLRKFILREFLLSRRHGLLPEDQLILCCKVSVVGPSFSTPGHNMTPANKDPRQMLADDVGELWENSLFTDCSLVVAGQEFRAHKAILAARSPVFRAMFEHEMLESLTNRIEIHDIHLQVFKEMMAFIYTGKAPHLHSHSMATELLAAADMYDLQDLKVMCEDSLCRNLSVKTAVPTLMADLHSTELLKTRVMDFIILHASEVSETLEWKSMVESHPHLVEEAFGSLASMHYFFLEPSLKR", "length": 359 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZV50-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLVARSWVCHKTYVTPRRPFEKSRLDQELKLIGEYGLRNKHEVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIVVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLRLAKSIHHAHVLIRQRHIRVRKQVVNIPSFIVCLDSHKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEKKEK", "length": 195 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZWL0-1", "protein_name": "Ribosomal protein L32 like 1", "gene_name": "Rpl32l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALQPLVKLKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILKPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNLNARLRSAENE", "length": 135 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A176-1", "protein_name": "Golgi associated RAB2 interactor 5A", "gene_name": "Garin5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRLRTSARSPAPAVRMAISPSGPLGFTSPVTQPRREASPGVPTTQGRGVAMKGGRDLKPASGRADRPLAQAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDTVPEESEDEDEVEEGQLQPPEVRAGPRAQGCWARKDGKGPVSCHRGQTRPAGLRTLGALIQPRSFQITKGPEIKPAQLRAREMDF", "length": 303 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A9N2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a77d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQNNSVSEFILLGLTEDPAGQKTLFVVFLLIYIGTMVGNLLIVWTVIASPSLDSPMYFFLAYLSLIDALYSSTILPKLLIDLLCDKKTISLTACLVQLFVEHLFGGVEIFLLVFMAYDRYVAICKPLYYLTIMNQRVCVCLVVVSWIGAFAHALVQVFSVYKLPFCGPNIIDHFACDMYPLLGLACTDTYFLGLTVVGNNGAISVVVFMLLLLSYGIILNSLKTHSQEGRRKALSTCSSHIMVIVLFFVPCIFMYVRPVSNFPLDKFITVFYTVFTPMLNPLIYTLRNLEIKKSMEKLCRKIFTSDRIRISSCYS", "length": 316 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAM5-1", "protein_name": "Preferentially expressed antigen in melanoma-like", "gene_name": "Pramel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVKTPNKLLELAIHSLLNEESAAIQALEEIPRELFVPLFIAAFEGGHKNVLSAMVKVWPYYCLHIGSLSIQEPQHELLKAMIENLPVYPAPSSSSRGPKLRILDLRQDTDCRITCPEVSTKTPSCFYSCAYSDRSITKIERQLCCVNAECKTLLPRPVELLVDLSLDGSLMEKEFLVLLMYKIEESLGSLHVCCRDLQIDKLCKCKCTLKFLDLKCIDQLSVDRGSLSDITSILCRMIHLESLSLSNVTFRSLSGKVFKIFLSHLQRMEHLKELSLSSFCLKNHLDRVLRILPPGLDFLYLPFCDLSYRDFKFMSQSPQVTHLKLLNLSNNPMYWGDFEPFHTVLINLSGTLQHLEINHCLISDSAMSALIPALIRCTRLRVLGFASNPISMPMLVNIMHNLTPMKELKYVIYPIPVHCYERWHFQGSLDRQKLAIVQLQLKAMLELAHREDMNWITYCE", "length": 461 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAN9-1", "protein_name": "Similar to human chromosome 6 open reading frame 52", "gene_name": "C17h6orf52", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGSTLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREELYDSLMNRRWHCLDTVLSNVPDELPQCEVF", "length": 157 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ABB6-1", "protein_name": "Olfactory receptor", "gene_name": "Or13a27c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VNCIWHSKMVSPNQTVVTEFVLQGFSEHPSLRLFLTGCFMSLYTIALMGNIVIIALVTSSTGLHSPMYFFLCNLATMDIICTSSVLPKALVGLLSEENTISFKGCMTQLFFLVWSGSSELLLLTVMAYDRYVAICAPLHYSSRMSPQLCGALAMGVWSICAANASMHTGLMARLSFCGPKVITHFFCEIPPLLLLSCSPTYVNSIMTLIADAIYGGINFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVAMYYSSVFFAYISPGSSYNPERSKFTSVLYSVLSPTLNPLIYTLRNKDVKLALGRILASFSH", "length": 318 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ADX2-1", "protein_name": "Olfactory receptor family 4 subfamily A member 80", "gene_name": "Or4a80", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQSKIVTEFVLLGFTQDPAGQKALFVMFSLMYIATMVGNLLIVGTVIVSPSLGSPMYFFLASLSLMDAVYSTAISPKLIVDLLREKKTISFRACISQLFIEHLFGGVDIVILVAMAYDCYVAICKPLHYLIIMNRRVCILFLVMAWAGGFAHALFQVLAVYNLPFCGPNIIDHFGCDIYPLLLLACTDTYLIGLTIIANGGAMCIVIFILLLLSYAIILRSLQNHSQEGRHKALSTCSSHITVFFLFFVPCILMYVRPVSSFPIDKSITVIYTVVTPVLNPLIYTLRNSEMKNSMEKLLQKILSPNRLRLLCCLYY", "length": 317 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AEJ6-1", "protein_name": "Peroxisomal biogenesis factor 11 gamma", "gene_name": "Pex11g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLNGLASALESYRGRDRLVRGSVGPWRDRSDLEFGQDSEMRKTGQRGGPKGTDIGRLVSYMRTSYLSLPNCWPYKCVLALQIRTLGYGCQLIGGVLVEQCPSRSEVGRRLLVVSAQLSHCRTVLRLFDDLAMFVYTKQYGLGAEEEDVFIRWLSVLSNMADQLYYPCEHVAWAADAKVLQVDSARWWTLSTAFWSLSLLLGAVKSLWTMLKLRQKLRSPTGHFASQLPRSKWRAVEARIWSEALTLLSNLADLANAVHWLPPGVLWAGCFPPWLVGLMGTISSILSVYQAARAGKQAEVDSP", "length": 304 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D6R901-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 21", "gene_name": "USP17L21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E0CXP6-1", "protein_name": "UMAP1-MVP12 associated (UMA) domain containing 1", "gene_name": "Umad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL", "length": 133 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E0CZF1-1", "protein_name": "PRAME like 34", "gene_name": "Pramel34", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRHTNLLKAMVAAWPFPCLPVGPLMKKPNLETLQALLDGIDMRLTREFHPRRAKLQVLDMRNMYHAFWNIRADANDSDCKSKTLDEKQLVKVLPRYARRQRLKVIVNLSISSHFNKSKAYFLNWAKQRIGSLYFCCIKMRIWDPPDQVIRDIFNVFDPEHITELELNTDWTLLQLAHFASYFGHMKNLQKVFLAPLHKNTSPIINITNATEAKCVHKIISQFSQFNCLQHIFMKHVHFLRDYMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALDLMPLRVLLEKVADTLEILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTLKALFQHTANWSKMNVEQYPAPLQCYSELGHVSVERFVQLCQELMYTLRAIRQPKSISFATDNCQKCGKPCVYDQGPILCSCFQ", "length": 475 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1B8K9-1", "protein_name": "40S ribosomal protein S6", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLNISFPATGCQKVIEVDDERKLRTFYEKRMATEVAADTLGEEWKGHVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKCKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPHRLGPKRASRIRKLFNLSKEDDVRQYVVRNSLNKDGKKPRTKAPKIQRLMTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK", "length": 249 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BBD9-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "LOC112445820", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFLPLRLAVVCSSNQNRSMEAHNILSKRGFSILSFGTGTNMKLPGPARDRPNVYDFRAMYDDVYKDLLRKDKERYMQNGVLRMLERNMEKEMPRPERFQECKDLFDLILTCEERVYDQVVEDMNSGEQETCQPVHVINVNILDTNKEATLGAFLICDLCQCVQLMGDMEDRIGELLQAFEEKSGRSFLHTVCFY", "length": 195 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BLY1-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLSSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F638-1", "protein_name": "Moesin b", "gene_name": "msnb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSINVRVTTMDAELEFAIQSSTTGKQLFDQVVKTIGLREIWYFGLQYQDSKGFSTWLKLNKRVTAQDVRKENPLLIKFRAKFYPEDVAEELIQEATQRLFFLQVKEAILNDDIYCPPETAVLLASYAVQMKHSDYNSEHHIPGYLCRDKLLPQRVLEQHKLTKEQWEQRIQVWHEQHKSMSREDAMIEYLKISQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYERSDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKSPDFVFYAPRLRINKRILALCMGNHDLYMRRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLRQIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTKNKDNLATELAELTSKINLLEDAKKKKEDEARKWQRRAIMVEVDLEKTKEELKSKLIGVHIQATSQTENDHDENDESSAEASAELTSTGSFRDRSEEQRITETEKNEPLQKRLQALSSELADARDDSKKTANDLIHAENVRLGRDKYKTLRQIRQGNTKQRIDEFESM", "length": 577 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FA22-1", "protein_name": "Protein tyrosine phosphatase type IVA 3", "gene_name": "ptp4a3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAWLNGLYPVEVCYNSMRFVITHNPTNQTLDTFIEDLKRYDAKTVVRVCESTYDKTPLEKHGITVMDWPFDDGAPPPTKIVDDWISLLKKSFSEDPGCCVAVHCVAGLGRAPVLVAVALIEGGMKYEEAIHLIRLKRHGAFNSKQLTYLEKYRSKKRLRFKDPFKHRSKCWLM", "length": 173 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE27-1", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase", "gene_name": "b4galnt4b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMRFPLKKIRKQFKLLLLLVLLMFAIGFTYLHINQGKAIKLHFNYGKDMERQAEGIGSSPKKHLSSSINPFEHGDAADSQEDGWGGEELNESAQESRANAEMHTLLAQKFLGLPWKPEYKGQANLHVFEDWCGSSVSQLRKNLHFPLYPHTRTTVKKIAVAPKWKNYGLRVFGFIHPYKDGDFQFAIASDDNSELWLSSDESPLNARLLVYVGQHGSEWTAPGEFSKFRSQTSKPVRLMSSRRYYFEVLHKQDDRGSDHVEVGWRPFLPGQKFDVIDSAYISLYTDESSLKMNSVHHIPQTLASHSLALQIYHRTETHTADMLKPDPRDTFYKIPMIDQSRLENVLPSCVYSPTYVVKDFPIARYQGLQFVYLSYVYPNDFTRLTHMEKTNKCFYRESPVYLEKFGFYKYMKMDEEEDDQPVFFPKPDDFLEEEEGVDPEEAINSSNRPVKRSGPSYQTSRITAATASSKPDRLDGGSKSSVFQQEKQYVQFKEQERSKKRTKGERFYRHSQVVDDEMTEIRQVKGSTGVLESQSGSLNEQTGPSEENGDSQTLSLVQRGRSLAWVLPDPALQSESKLIETASPTVKERSPFKLPHLYVLANRILGNAGKPVVEKESNSNKIYITRPRPPVSRPKPPVEVFPGVFLYQSRKSKRLVDLSSKWRSLKTQAAASAPWANFPLMDHKTSTQSALLKQSHLSSPTEPGPHNKGDPTASISDPDSVPPSSSEKRDHPGLNSSSQPPEEEPTKISEMAEGLDVAPQSRGLEEGEMSEYSYEEAEVRPHLAEEAINWQRTFSVNPVDFELLRSDWNDLRCNVSGNLQLAENEVIDVISQFMERLNERNRGIYTLARIVNVEKRRDSARGNRYLVELLLMEGGKRLVRLSEYIYLLLHRSRFEEGIESREGTVPSSHRTPSKIPLPSGSSAQTHTTTPWSTSWAKPLLCQPIMLQWRHDVMVHFVVPVKNQARWVQQFISDMELLHRETKDENFSVIIVDFQSDDMDVEQALKESTVPRYEYLKREGNFERSSGLQMGVDTIEDSHSIVFLCDLHIHFPHNILESIRKHCVEGRLAFAPIVMRLDCGSSPLEPDGFWEVNGFGLFGIYKSDFDKIGGMNTEEFKDHWGGEDWELLDRVLQNGLEVERLRLRNFYHYFHSKRGMWNVPVKRASQG", "length": 1167 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFR8-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "uqcc5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRKSQNLKYMLSLVPGKKRFGVYRFLPVFFCIGGVMEWIMINVRIGRETFYDVYRRKQSERAYQQKTEEGLIMLTDSQAK", "length": 81 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9PUW9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r143", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PUZ0-1", "protein_name": "Apolipoprotein L 11b", "gene_name": "Apol11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWNEISEDIRKVECRTFEKVIDNATEDLITDLRSLITEDGAWNGFVEAVELSSEEGEALRDALKERLAQDPTDENDRPQREQQKERFLREFPQLKKKLEDHIRKLRDLADKFDQVHKDCTISNVVSTSASAASGVLALLGLVLSTVTAGASLALSASSVALGATSSVSSFTTTVVEDSMTLSYESEARNLIGASMNVLEEILSIMPKITCKFYNTVADLVKAFKTLKGQIQTIRRARSISRRGAQARNLTSTGRSSGQGVSQMTRGARIRAGVFTSVFLGWDVYDLVTKQRICMMGEKQSQVEHCGTWLASWRRTFRNLSRSTMLCSQTCLSDALP", "length": 337 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PV04-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "Eif4a3l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI", "length": 411 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVP9-1", "protein_name": "Predicted gene 4884", "gene_name": "Gm4884", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSENLQSSPFFGTESTLHPSLPLLSNSKQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMVVQMETSLGLPPSGQTYCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSQFLALPPAPSLEQPENKTMPEIKEGTKENQDTPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENEIGSSFDFKDITRFGADIQLPQLLNTLTDIDQDQSCENWRVTSGLFDQVRENKHKSFELLEGAPQAKFQHWDLVEGEGAVGVAGASDRAIDNMAKHPEGKAPKGPPSKNRRARKQEQERPSGPENKSKKTQELKQSRNRVKAEKEPSIPKTKRKRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKSEKKTGISSFRGLRTFTSNKDSGPGSVTTTVLNMPCESQGPPKSPGKVQSAESSVGKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPTAVYPVQHHSHSVQPTTLRPAQPPPASSSLIASAKPAPPISSSATGPNVTNPNQSSAVPQLATSRPVPYRASSHTSFQRELVSAARNKVPSPPRPVPYRASSNTSFQRELVSAARNKVPSPPKPQTQYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRRSQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM", "length": 694 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVW0-1", "protein_name": "Major urinary protein 8", "gene_name": "Mup8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCVGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKVHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNAMDLVPEHVLVLTRQIAASRPENEEWPEPPVLSGDFSPGLHHHPFLSIQHPQYKFCDLHSILSH", "length": 235 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVZ7-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKYFCLPRFSIISMLTGNGSFVTEFVLAGLTDRPELQLPLFYLFLIIYTVTVVGNLGLIILIGLNPHLYTPMYYFLFNLSFIDLCYSSVSSPKMLMNFVFEKNSISYEGCMTQLFFFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSPQVCSMLSFASYGMAFAGASAHTGCMLRLIFCNANVINFYLCDILPLLQLSCTSTYVNEVVVLIVVGINITVPSFTILISYVFILANILNIKSTQGRSKAFSTCSSHIMAISLFFGSGAFMYLNHSGSMNQGKISSVFYTNVVPMFNPLIYSLRNKDVKIALKKVMMRVHSRFIS", "length": 325 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW18-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r257", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW59-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b50", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALANGSFVTEFILLGLTDQPDLQMPLFLIFLIIYLITAFGNLTLIILIVLNSHLHTPMYFFLFNLSFIDLCYSSLITPKMLMNFVLEKNIISYMGCMTQFYFFGFFAISECYVLTAMAYDRYVAICNPLLYSVAMSPKMCSYFILGSYFMGFSGAMIHTGCVMRLTFCDGNTINHYFCDLLPLLQLSCTSTYVNEIELFIVTGKDIIVPTVIIFASYGFILSNILKIRSTSGRSKAFSTCSSHIIAVSMFFGSSAFMYLKPSSAVSMNEAKFSSIFYSIVVPMMNPLIYSLRNKDVKVGLKKTLSRMFSHNLISL", "length": 316 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXC3-1", "protein_name": "Cytochrome P450, family 2, subfamily c, polypeptide 69", "gene_name": "Cyp2c69", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPFVVLVLCLSFMLLLSLWRQRSARRNLPPGPTPLPIIGNYHLIDMKDIGQCLTNFSKTYGPVFTLYFGSQPIVVLHGYEAIKEALIDHGEVFSGRGSFPFFDKVSKGKGIGFSHGNVWKATRVFTVNTLRNLAMGKRTIENKVQEEAQWLMKELKKTNGSPCDPQFIIGCAPCNVICSIVFQNRFDYKDKDFLSLIGKVNECTEILSSPGCQIFNAVPILIDYCPGRHNKFFKNHTWIKSYLLEKIKEHEESLDVTNPRDFIDYFLIQRRQDKGIEHMEYTIEHLATLVTDLVFGGTETLSSTMRFALLLLMKHTHITAKVQEEIDNVIGRHRSPCMQDRKHMPYTNAMVHEVQRYVDLGPTSLVHEVTCDTKFRNYFIPKGTQVMTSLSSVLHDSTEFPNPEVFDPGHFLDDNGNFKKSDYFVPFSAGKRICVGESLARMELFLFLTTILQNFKLKPLVDPKDIDTTPKYSGFSKIPPKFQMCFIPVE", "length": 491 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXM9-1", "protein_name": "F-box and WD-40 domain protein 24", "gene_name": "Fbxw24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLSSFPMMEIFSYLDAYSLLQVAQVNKNWNALASNDFLWRKLCQERWLFCDMVTLQLLGKETWKQFFVYRTWQEHVKSRAIPEDFTYKEIPLECGVRGYAGYISGCALTRNGQGKSVVCMVSSKNKISTWDISESVITWVSPVQPASIKLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFRIPDLHLISTVNVFPCGFDKIDCSPQKKWVLLSQNHPCIYPKVFYMSSLLRTSEFSDPVSTVLEFSLCKRAFWTPRREDRITLMSRRGRPIVTRFETFDMKLEENGNKTIVKGDLVASFSLQDYNENPKWMGVSDKSVIVCSTGSSLLLFSMKGLHLQTFQYSPEMIVRLWVDPVHVIITCNDGSIDVYMWEERSLLLKMCYRLQNGRHLPPFGFIKNLLCDDVSIVQLMIDRQGPCFLMAYTLNICS", "length": 466 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q069-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r157", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCHFEVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q0V3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r68", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVAIIKENQTQSKMDFWNMGIKILFLSQTTTGILGNFSLIIYYVVNYIVHTLKPTDLILMHLMTSNALMVLSTGVLHTMAAFGLAHLLNDLGCRLILYIQRVGRSTSIGTICLLSIFQAITISHRVSCYKGQKIKSSKYIGYSISLLWVLHMFLNFILFVDIFIKRNRNNMTSDRDFKYYSIVERNEFSDSLYVALVVCPEIFSSVLITCSSGSMIGILYRHKQRVQHIRSFHVSSRNSPEWRATQNILVLVSTFLAFYTLSSVLQGCIALLNNPNWWLVNITRLTSLCFPTFAPCVLMSHYSFMPRFSLVWTWNKTS", "length": 319 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1C7-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A2", "gene_name": "Speer4a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWMGETREGRKDADLPSKSNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHNLEMENMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIHQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 252 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1N7-1", "protein_name": "Predicted gene 8126", "gene_name": "Gm8126", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNRNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKITQSINDTIEKYKEFIEDKDSYSFMHTYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEENRFCHESSKNIHPKY", "length": 198 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q328-1", "protein_name": "RIKEN cDNA 5430401F13 gene", "gene_name": "5430401F13Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSRILLVLLSIALLALTSAQRVNEDDGSALQEEDALEIGDSNQQHDDIHERLNEIKNHFQDQISQHGKEAIKSKKGKNGPRSRRSSDDDNLEVQDHQSGNEQAGGGQGGRGRSELKGQNGKGSQKGKKGKGGQQEQKGKGGQQKQKGKGGQKTKRGKGGQRSQQDNVQEVYQE", "length": 175 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q346-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSKLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q366-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4f2", "gene_name": "Speer4f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTMCVRLRRLFQRANVDGRETREGSMDAGLPCERNEGRRRWTWRMWMAHRQTSSPVPVTSNQFEKEEEELMEEIQLISQEKNGLRDYLNLTLGSKITRLNQSYEELKLKQKELMTLQHDLEMATMEAREENEELKKEINFYSNLHSRALMENNLIKKKLMTLQQESKEVQAEWASIQQHLDVNLSGKDEQENNSILDTQEHQVSETARELGLATDQEDSILQDELPPQEAPAEELSPQEAPAEELPPQEAPAEQLPPQEGPAEELPPQESPAEHHLQHPQSFSDESSYITYPEWE", "length": 295 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q3G0-1", "protein_name": "Zinc finger and SCAN domain containing 4B", "gene_name": "Zscan4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPIPDNAQMPVDTTQDRLLATGQENSENECNTSCNATEVNVGESCSGNEKDSLLITQKEQNHEHEEGNVVCQFPRGARRASQDTSSHHVDFPSALTPADVPMEEQPMDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKTDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQPISDPVLGKNHEANLPCESHQKRFHRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCITCQKIFKRVSDLRTHEIIHMSEKPFKCSTCEKSFSHKTNLKYHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 505 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q4E0-1", "protein_name": "RIKEN cDNA 5031410I06 gene", "gene_name": "5031410I06Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q501-1", "protein_name": "Predicted gene 2237", "gene_name": "Gm2237", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENVDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSPAESRTWH", "length": 211 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q5G7-1", "protein_name": "Oogenesin-1", "gene_name": "Oog1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPLECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVELL", "length": 496 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q6D7-1", "protein_name": "RIKEN cDNA 1700024B05 gene", "gene_name": "1700024B05Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESHDNPVSAGRTSSQNCNITNHMKNMNKLDDMKFYIRKINAELEELFRILDIDMNTDLNYRMNTEFTIIKSQHEKTMLDMEKMKQSISDSIDKYKEFIEDNDSYSIRHTHLLKECNQLKEKVRMLLNENRKLLVEQADQEASFGEEKSSVMRPARTYIPSAKQQQL", "length": 167 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q7M8-1", "protein_name": "Predicted gene 5796", "gene_name": "Gm5796", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQSGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8A4-1", "protein_name": "F-box and WD-40 domain protein 28", "gene_name": "Fbxw28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQIAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLSVCS", "length": 466 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8I6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDLVPKNPPTDLKCKLAHFFHMVARGTNMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVRYSCYSCWLFSVLNNAYIPMNVRGPKKSHNDSDSQGKRMCSISVVNVDMNYLQFSYDIIFIGIMVWTSVSMVIHLNRHHQRMHYIHNPNQSNRGHAETRAAHTILMLVVTFVSLYILNCICVLFHVSFVESRRWLRNVIEFLALSFPTISPLLLIFRDPRGPCSLYFNVGLEIHVTGKVITEEQ", "length": 310 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8L6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r132", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8T0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQTGLGVLANTVLLFFYVFIILGHRPKPTDLISCQLSFVHIMVVLIGGDILLADIFESLNIGNDFKCKTTFYLFRVMRGLSICITCLLSVFQAVTISPNTSVLAKFKQKVKKYMTHVFLCIWFFNLSFSTNQIFYVGGFTNVSETNQMQVTKSCSLLPMNYIIRGLIFTISISRDVFLVGVMLTTSVYMVIFLFRHQRQCKHLHSFSHPRESPEKRATQTIMLLVSFFVVLYWMDFIISFTSEMLRMYDPVILTLQKFMMYAYPTITPLVQISSDNRIIIMLKNIQSKCHPSFSLKDFFFFI", "length": 311 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8V7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r173", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALNKALKTTEEVALQIILLCQVGIAAVANILLLVHNLSPNFAGPQLRPKHVILAHITVGNLLIILLTGFPSNIIVFVPRNPLNDLNCKLEYFIRLVARSANMCTTCVLSTYQFIVLVPGKWSRMILRGNTSTFVHYSCNSCWIISVLNNVYIPIKISGPWNTDNDTDLNSKWVCSMSGFELVMVFLRFVHDTMFISIMVWTSVSMMLLLYRHHQSLKHIHRSNGSLGLQPEARAAYTILMLVVTFVCFYLLDCMCIFFHISFVHFRVWLRHVNEILAASFPTLSPLMLIFRGPKKISAKGINTENAFINSH", "length": 313 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9N3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r152", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFASKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFGSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAETRATHTILMLVVTFVRFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QAN3-1", "protein_name": "Predicted gene 1979", "gene_name": "Gm1979", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPPESNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QD93-1", "protein_name": "Granzyme K", "gene_name": "gzma", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDICRNLIVFHFLVFTFFKVTVCSDVSIVGGKDVKKALSWMVSIQVNQNHKCGGILIHKEWVLTAAHCKEDSYSSVTVLIGSLSLSKGSQRIAIHNYEIPETFNKKTKKDDIMLIRLSKKVKAKPYKIPKKEKDVQPGTKCVVRGWGTTDYKGKQASDKLQMLEVLVVDRVQCNRYYNRNPVITKDMLCAGNTQQHRGTCLGDSGGPLECEKNLVGVLSGSHGCGDPKKPTVYTLLSKRHITWINKILKQQFNSTRF", "length": 257 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QLQ1-1", "protein_name": "Defensin, alpha, 35", "gene_name": "Defa35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHDELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LPT0-1", "protein_name": "Gap junction protein", "gene_name": "Gjc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCCSFLRQLLARESQHSTPVGRFLLPVLVGFRLLILVSSGPGVFGNDENEFMCHLGQPGCKTICYDVFRPLSPLRFWAFQVILMAVPSAIYVAFTLYHVIGYWEVPGRNKEQEAQICKGGRCKDVSGAMSLKLLWAYVAHLGVRLVLEGAALGVQYHLYGFKMPSTFICREDPCIGSTTCFQSHPSEKTILLNTMFGISGACLLFIFLELVLLGLGRVWKTYRHKLPLFKNLSTSERSVRHKDTTDDLSVVETKEPF", "length": 257 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LT33-1", "protein_name": "Cytochrome P450", "gene_name": "Cyp2b14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVFLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFIDTYLLHMEKEKSNHHTEFHHQNLVISVLSLFFAGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVISSHRLPTLDDRIKMPYTDAVIHEIQRFADLAPIGLPHRVTKDTMFRGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDANGTLKKSEAFLPFSTGKRTCLGEGIARNELFIFFTALLQNFSLASPVAPEDIDLTPINSGAGKIPSPYQINFLSRCVG", "length": 495 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LYQ4-1", "protein_name": "Alpha-1-B glycoprotein like 1", "gene_name": "A1bgl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLLVLLEPLASLTLTCKVCEPSKDLHRILHLSSMETACTLSLALPPTLPSASLIFSASGVHTLILLRVRLNHSLILLSLIHTGPLPRPWLSANPVPWITPGLRTFLLCQGTVRDVVFMLRREGDDGNKEKEQGIFQVHEPGNYSCNYYTNTEYTPSKPSGTVTIKEYVIPPPPMLTSLESSTVDEPEMTQMSLLCVAPLSDVEFQLRQGEREMKVLIVSTSPERASFYLKLSDMGDHSPFTCRYRLNRMTAWSEDSKPVQLMWSDETLPEPVLTVEPSPHQSFEPGSTVQFRCTAPKAGLRSEAGLRFGLHLEDLYDHRLLQTQKSSGNETVFQLRNVSATDSASYSCIYTELTPPYSGSAPSDFVILRVNGPPPPPKLQALWTGKVFAGHDVVLRCQSDVTGVIVELLRDGKFVPYRILRVLNNYSDLGLHSVGPQHTGNYTCRYTSWLPEPVQSEPSNPVELLVEGMASGVVVVGFCLLIFPGLCILVNCAI", "length": 495 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M6N1-1", "protein_name": "Zinc finger protein 945 like 1", "gene_name": "Zfp945l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTASLVNVSKCLLTFRDVAVEFSMEEWECLNYSQKTLYRDVMMENYNNLLFVENHCKYKKVLDQDPNSIVHNVNIYEKAYECNELVKMTHESSQGTPFKTKHKDASLQISTLNRQKIGNTRDEPCKFKDCINFLNVFVIRQNQRIYIGEKEPTTIEYENHYNSKHEVMLKQSNSTGNKPHIFRKYGQCFKIYSSFSRYQNDHTSEKFYKCIKCRKSFLHLSQLKVHYKIHYRKYPCKCTACSKCFYHTFGFKRHYSIHPEVNTYKSSDCDKSFIYYSSLRKHQKIFGGERHYECNEGLRSLYTVFQPVYYYIPHIGEKAYKCSECEKCFTRKYHLTVHQRIHTGEKPYKCGECDKCFTRKYHLTDHQRIHTGEKPYKCSECKKCFTRKYHLTDHQRIHTVEKPYKCSECGMSFMKKYHLRSHQSIHTGEKPYNCSECDKGFTYKGHLRRHQKIHTGEKPYKCSECAKCFTENSKLRRHQRIHTGENLYKCSECDRCFIENNKLRSHQKVHIGEKPYKYSEYDKCLTQKGSLRSHQLIHTGEKPY", "length": 544 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M7A9-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "AABR07026048.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRLAHRPIQWRNFLSQDSLDQDTMRKKTILSNQTVDIPENVDITLKGRTAIVEGPRGTLRRDFNHINVELSLLGKKEKRLRVDKWWGNGKELATVRTICSHVQNVIKGVTLGFCYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVWMRTNVACSVSQAQKDELILEGNDIELVSNSAALIQQGTTVKNKDISKFLDGIYVSEKGTVQQADE", "length": 219 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M9J5-1", "protein_name": "Uncharacterized protein", "gene_name": "Esp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ITFLPVTLFLIILLWPSMITEGRVLTQNQKELSISADHNKNHKSDLDKIEFQGQPNIQKAVEMTICASDKDQTLLEDQANANQDKQLYKDSHLLCGRSLDHIVK", "length": 104 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QDL3-1", "protein_name": "Novel nacht domain containing protein", "gene_name": "LOC560232", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKHTPGDLDLSTGCSSVHQNRAEAEPSCVSMKSDVSMDPPTNFKSGNTGPAVSSRKRKRAEAEPSCVSMKSDASMDPPLKFKSKNTQPAVSVDRDDQSGDLLQDSLQPEHDELQRVKEQHKTTMKNKHERLFEGINHGETQTLLNRIYTQLYIIEGESEGVNEEHEVIQMEKRARTKPSQHTPVYCNDIFKASAGAGHEVKIKKEKAQIKTVLTKGIAGIGKTVSVQKFILDWAEGKANQDVDFMFVLPFRELNLIRDHQYSLHRLLLDFHPELEDLEPKIYEQCRVVFIFDGLDESRITLNFSDEEKVCAVTESSSVAVLMWSLLKGDLLPSALIWITSRPAAAHQIPSRYIKRLTEIQGFTEPQKEEYFRKRISDEHQASRIISHIRRARSLQIMCHIPVFCWISSTVLQKLLEEDVSAEIPQTLTEMYIHFLLIQINMRKQKYEERDPEKLLQSNRGVILKLAEVAFRQLMKGNVMFYEEDLIESGIDVTDALVYSGICTEIFKEESVIQQRKVYSFIHLSFQEFLAAFFVFYCHLTKKRELLELILGYSYDQYLQSSSEKSLYDLLSSAVDEAVRSSNGHLDLFLRFLLGVSLESNQRLFQDLLTHTEESSESIRRITQYIKDQIKSDDYFKRAAERFINLFLCLLEVKDQTLAREIQEFVKSDKHSEEELSPAHCSTISYMIEMSEEPLDEFELQKFNTSAEGRLRLTTAVRNCRRAL", "length": 725 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QGM0-1", "protein_name": "Galectin", "gene_name": "lgals1l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTVLIQNMAFKVGQTLTLTGVPKPESPEFTIDIGNSSEDIALHINPRFDAHGDQCIIVCNTFQNDCWCEEHRDENFPFVQGEEFQIKITFTNEEFLVTLPDGSEINFPNRQGSEKYKYMNFTGQARIQGIEIK", "length": 134 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QMQ9-1", "protein_name": "Uncharacterized protein LOC541480", "gene_name": "si:ch1073-398c20.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADIKQESDDIRIAEVFTLKQEDPEEQTDLLPLRKEFQGLDNVKEEEALVEEHQDITPAEKRITCSETENTTQKASEKTGSRSSFTCEQCGRDFAKQGTLNNHMRIHTGEKSFTCQQCGKGFTQKRTLRNHIRFHIEAESLSCQQCGESFTQKQDLTDHMRVHTGEKSFVCDQCGKVFLRKDGLEKHLKNHHKEKPHVCPCGKSFTDKTKLEEHTKTHTGEKPHTCDKCDECFSGKYDLIRHMRFHSAETPYICQQCGKSFALKRVLMTHVKIHTRDRPFLCKQCGKCFYRKDNFNRHVRVHTGEKPYACSECGKSFSERFQFNEHSRTHSGVKRFSCEQCGRGFNRKTELKRHMRVHTGEKPYMCPQCGKTYAFKTGFDIHMLHHNAEMPYICPQCGERFSVKQRFDVHMKIHAGNSDK", "length": 420 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1Q6-1", "protein_name": "Uncharacterized protein LOC641576", "gene_name": "zgc:152710", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLIWTQFGVKHKNVKCKVRVIHGEEGSWSSEEVREEPEVSSPPPSPECVDYYSVLGVSNDSNEEEIRKAYKRLALRYHPDKNSDADAEDKFKQIAQAYDVLTDPEKRNIYDQQGLTKGGVAPTCNKTDPSHNSKADAHSWHMFFNFDLDSDDDLFNPFTRNPLPHLSRHHGNKGGLKPAGDAEVHDLSVSLEDILMGVTKRVKLTRLRQTDKHTLKPEERVFDVEVKKGWKEGTRITFPNEGHQMLGHAPNDLAFVIKEKKHAHFRRDGSHIVYTCTITLREALCGCTVNVPTLDGQMKPLPCSDVIKPSSVRRLIGEGLPRAKNPAQRGDLLVEFQVVFPDRIPPSSKEIIKHSLGQC", "length": 360 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RA39-5", "protein_name": "[F-actin]-monooxygenase mical2b", "gene_name": "mical2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGETEEERTSQAGQLFENFIQATTCKGTLQAFSVLCRQLELNPSDHRGFYSSLKTAVTFWKAKGLWGKLDKRAGHKEYSKGRACADTRCLIIGGGPCGFRTAIELALLGAKVVVIEKRDTFSRNNVLHLWPYTIHDLRNLGAKKFYGKFCAGSIDHISIRQLQLMLLKIALIVGVEVHVNVEFVKLLEPPEDQSTDGQGWRAEIRPADNPVSDYEFDVIIGADGRRSTLDGFRRKEFRGKLAIAITANFVNRNTTAEAKVEEISGVAFIFNQKFFLELKEETGIDLENIVYYKDNTHYFVMTAKKQSLLDKGVIINDYIETERLLAFDNVNQEALLSYAREAADFGTNYQLPSLDYAINHYGQPDVAMFDFTCMYASENAALVREKSHRQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMIKGWAQGKEPLDLLSERESIYRLLPQTTAENISKNFEQYTIDPATRYPNLNSSCVRPHQVRHLFISGEQDLSSLERSGQTRRSVSISRRESEVRPGRLLLWCQNQTQDYRGVNVTDLNTSWRSGLALCALIHRQRPELIDFDSLNEADCAKNNQLAFDVAEREFGIQPVTTGKEMDAERGPDKLIMVLYLSKFYEMFHKSTQSVTGLPKEIDANNGDCSSKTANSLYNSINHARKRIPKLDKKLEESDVNRKRKKASSHHEELMSCQTAPPAGEREEQKENKVRSMATQLLARFEENAPSCALRRQSDSESDSDADRPVSLDLTENPRFARPKIEPTHPSTTPDKAKWQPSPYLRLLESNTRSETLHTEHYVESQSSHRLTEIQSECQYSSVSSAYKSSERRPRSPLIPFTPTLSPMMHCLQQLEEQVIQQRKREPLNRKSIKERAQKLSSLFTGNPAQPQTDESSPAVSPSSPPQTIPESSTLSCLLSPAPSLTHKQCSEASETHLKADKHTEIRRVERLDPSKQRTVGKVSSAIGVKAATLAILYETDHRPNNPITLSLTEARRCAESGLVSVRKEFSASLGGSDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQRKTSTRHRRGEIQDGGIRSSSITISNHTSTDGTRGQPSGGEFDSSTQQDLQTLPDSKEIISVSEVKDSSKKADPADSAPACPDSPLQKVKRSTAKGEITNKNILWKKKIRSTLPLVLMKKFHRGKPEDKTEVLAEEDGNSDFEEIHESLSSKKPSNPSTDSNCLPTKDNSSTPLDEIPKIPLYRTHVLPEYPKPSSSSPEPIVTSISSDPISFSPKKKLTLSLSEKEKLLNWDLTNPGKSGAEEQQQQHVKPSISLQHDHPEPTHPQPEPAPPLFGFQQWANNLRKSFSKGSNPVVLRRNRPMKARPLSEGSFNVGAVFQDEERCGSLVDEGEARPRTESEIASLLEQVALGSKTSRGTKDDMASLPPRKLNFFSSLRIKRVEGAEQSRGEGQKDILSILSRFRNKASAQQQQQQKSNSSSEDEQEPKLTHSGALQKKKEKIAIRQTKSDELKRLHRAQVIQRQLEEVEEKQRSLEEKGVALEKVLRGENGDDGSTDEAALLQTWFKLVLEKNKLSRYESELMIFAQELELEDTQSRLQQDLRRRMATEDCEKSASELVEEQNILVEIMKVVEKRDKLVSLLEEQRLKEKAEDRDLESLILSRGYQFHWT", "length": 1679 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RXL1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152495", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFTICNDSHSDFILLGFSDKPYLEKILFWVVLIFYCLTIIGNLVIILVSLKDPKLHIPMYYFLSNLSLLDLCFTSSCVPQMLVNFGGPEKTISYIGCAIQLYVFLWLGATECVLLVVMAVDRYVAVCHPLQYTTIMHPKLCLELAILAWGTGLIQSLTQSPATLQLPFCSNRRLYDIVCEVPALIQVSSADTIYNEIQMSIASIILLVVPLVIILSSYGAITKALLRVKSTEGQKKAFGTCTSHLLVVFLFYGTVTAVYLQPKSHYAHEQGKFLTLFYTVITPTLNPLIYTLRNKEVKGALIRLGKKTWDDLCWTIA", "length": 317 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD0-1", "protein_name": "Transcription elongation factor A like 3", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRQVKHLRSGSLPTPGLSVTSPSPTARPATPRTACLFPALCKTRKGEGTCPESLQDKKRRKNLNMEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 264 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "LLVVVLVTYLLTLVGNTVIILIASIDPNLKTPMYFFLTHLSLVDICLTTSIVPQLLWNLRGPAKTITTLGCAVQLYVSLALGSTECVLLAVMAFDRHAAICKPLHYAAVMNPRLCQALAGVAWLSGVGNALIQSTVTLWLPRCGHRRLHHFFCEVPSMIKLACVDIHTNEVQLFIASLVLLLLPLALILTSYGHIVKAVTRIKSVQAWRKALGTCGSHVMVVSLFYGTITAVYIQPNSSYAHTSGKFISLIYTVLTPTLNPLIYTLRNKDVKGAMRRLFRRDLGS", "length": 285 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S4M2-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSLVILEKFQHILRVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVEHVITIMQNPGQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLHEDVERLKKIRAHRGLRHFWGLRVGGQHTKTTGRRGHTVGVSKKK", "length": 152 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S6C0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNCLTPHTSEDLLVPASATHLGGRRRRARSRERRPRDQVPGWAPAAPLVQEEQVRVPQRISQIQCLPKGVYKRDGSQEKMEQEECAICTLDFVCGDPIRSLPCKHFYHLGCIDEWLTRSFTCPYCRGPADGPQPSSRDTP", "length": 141 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7N4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152708", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDQTNSSVVTEFVLVGLTQSLGMQFLLFLLFSTFYVGIILGNLFIVFTVISDSHLHSPMYILLANLSLIDLGLSSTTVPRMISDLFSDCKTISFHNCMIQMFFIHVTGGVEMVLLIAIAYDRYTAICKPLHYLTIMNPQMCMLLVVAAWITGVTHAVFQFAFVINLPFCGPNNVGSFYCDFPRVIKLACIDNYGLEFVVTANSGFLSTGTFFLLVVSYIFILVTVRQHSSKDLSKAFFTLSTHITVVFLFFLPCMFLYVWPFPTKSLDTFLAIVDFAVTPVLNPAIYTLRNRDMKVEMRRLSRQVISSREMT", "length": 312 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBB9-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MHALPAFESFLLFKDEKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEALLNVITDLISKLSLLEERLRVAIKDKQEGIECWTGRGPAWPGPALTLALLQAPCG", "length": 140 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBV4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100154723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESENITVVTEFIFVGLTQSRNIQLLVFVLVFIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNPRACYALSLAQWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPGIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKKLLINN", "length": 305 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SJ79-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259717", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTKGTEFILLGFAGQHKSWPVLFIVFLVTYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLEEKVDLCYATAITPKMLQNFVWTEHSISFIGCMVQLLTYGAFATSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLVIGSYFMGFLNASVNTSFTFQLNFCKSNKINHFFCDAPPILALSCSSIYFSIMLLAAFVGFNLTCTVSVVIFSYVFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 310 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SLL7-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSISKFLLLGLPIQPEHQGMFFVLFLVMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFLACIDNLLLAVMAYDRYVAICHPLHYAIIMREELCLCLLVLSWLLSCAYALTHTLLLAQLSFCADIIPHFFCDLDALLKLSCSDTSLSELVTFTAGAAVVIFPFIGILVSYGHIGLSILRVPSTKGICKALSTCGSHLSVVSLFYRTSMAVYLSSSGQFHDKDIIVSVMYTVVTPMLNPFIYSLRNRDMTLALGILFRNINIFSK", "length": 311 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SMZ6-1", "protein_name": "10 kDa heat shock protein, mitochondrial", "gene_name": "HSPE1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 102 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SRB7-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVVQKSGEKKRGRSAINEVVTREHTTSIHKRIHGVGSKKRAPRALKEIRKFAMTEMGTPDVRNDTRLNKAVWAKGIRNVPRRICAPLSRKRNEDEDSPNKLYPLVTCVPVTTFKNLQTVNEDEN", "length": 125 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SUB9-1", "protein_name": "Multifunctional fusion protein", "gene_name": "IL1B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATVPEPAKEVMANNGDNNNDLLFEADGPKEMKCRTQNLDLSPLGDGSIQLQISHQLCNESSRPMVSVIVAKEKPMNPSSQVVCDDDPKSIFSSVFEEEPIVLEKHANGFLCDATPVQSVDCKLQDKDEKALVLAGPHELKALHLLTGDLKREVVFCMSFVQGDDSDDKIPVTLGIKGKNLYLSCVMKDDTPTLQLEDVDPKSYPKRDMEKRFVFYKTEIKNRVEFESALYPNWYISTSQAEQKPVFLGNSKGRQDITDFTMEVLSP", "length": 267 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F2Z5L2-1", "protein_name": "Histone H2A", "gene_name": "H2AC18", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4IWB9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 28", "gene_name": "CYP705A28", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIMGRSCSEKNGEAERVRGLVIESLALSPKIFLGMIFHKPLKKLGISLFQKDIKSVSPKFDELLEKFLVEHEEKMEEDHYKANDMMDLLLEAMEMRMQNVNLCIKRVSNTKARKPPILFRYGKYSNNSLLLQELLVAGTDTSALATQWTMAELINNPTILERLREEIESVVGNTRLIQETDLSNLPYLQSVVKEGLRLHPPASISVRMSQERCELGGFYIPEKTLLVVNTYAIMRDPNFWEDPEEFKPERFITSSRSEQEDEMREEVLKYIPFSAGRRGCPGSNLAYVSLGIAIGVMVQCFDWRIKGEKVNMSETAGTIMLAMAQPLKCTPVPRTLNLLPSSLHIPSS", "length": 348 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J311-1", "protein_name": "Zinc finger (C2H2 type) family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLDGVELLLDLREMVSQSGFEKSTTCSGVIALRSNLQSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDSLKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISCSKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERIWGLKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASISNLPLGDGFMDLELKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHRWKLVPKPEYIEDDSSLLDSSEAKKIVSKPSSFEHAQEEKILQCVEPKLEFHEQLAHSGFDKFDTCSKIRFSALPSPPEAKKIVSQPPSFEVSVDEKILYRAEPKLNFSEPLAHSCFDNSSSYRSIICGKSFVCSQALGGHQTLHRSIKGQLAGTEDGNSLSVTDSEASKIVAQPSSYKSQGI", "length": 650 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLV4-1", "protein_name": "Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein", "gene_name": "DHYPRP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASTTIILFLSFSIIPLLTIVRADNHSVYCPPPPPCICICNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIIRNVSDLDAVTCFCKSVGAPRFSLSPNFGIFFKVCGRRIPQGFSCPGPSPTISPPPLPPQTLKPPPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIVRNVSDLDAVTCFCKSVGARRFSLSPNFGIFFKVCGRRIPQGFSCP", "length": 375 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K5R6-1", "protein_name": "Cell division cycle 20.6, cofactor of APC complex", "gene_name": "CDC20-6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMKSIALALCLTHHSPMVLSIVDYGDSQEKTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSSYVETEKVEEEDRDDFLKQVWFLTDNLVFFFVDIEEYIVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPFAHVNHIR", "length": 428 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F5H284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4D", "gene_name": "PPIAL4D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F6R3J9-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1G", "gene_name": "Speer1g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNKKNKEVEIDWALIEKYLVDLNLNGQTGADQQP", "length": 157 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6X687-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1A", "gene_name": "Speer1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKQSSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMPVTQNQKNKEVEIDWALIEKYLVDLNLNGRTGADQQP", "length": 157 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6YNI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRCRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILVGLQDYQDNKADVILKYNLDEARSLKAYGELQEHAKINETDTFGPGDDDEIVFDDTGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7AMQ8-1", "protein_name": "Exocrine gland secreted peptide 8", "gene_name": "Esp8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKVSAMTSFPVMLFLIILLLPSICSEERTQADPTISADNKKNFKTVVDLTDCQCERNFIESLESTLPASNQDQTLFENMTNQHKLNLSKMLSVLSKCCTQKQQVDTVHFRRMPHRIQSTKQNNYKKQVLYPMQEFMNLTRDVLVSRYV", "length": 149 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7C9P2-1", "protein_name": "F-box and WD-40 domain protein 25", "gene_name": "Fbxw25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSLPMLKILSYLDAYNLLQAAQVNKNWNALASSDVLWRKLCQRRWHYCDMVTLQLQGKETWKQFFIYRIWQEHAKTRAKPEDFTYKEIPVECGFYGYACYISGHGLTRNGQGKSVICMVSSKNTISTWDIHKSVITWVSPVQPASINLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLVGDTLGNLYIFRIPDLHLISTVNVFPYGFDEIDCSPQKKWVLLSKNYPHILPKVFYMSSLLRTSEFSAPVSTILEFSLCQGAFWTPRREDRITLMSRSGFPQITKFETFDMKLEGIGNKVAVQGKLIASFFLPYYEESPNWIGVSDKDVIVCSTHFFLLLFTINGLHLQTFQYCPETIVRLCVDPVHVIVTCNNGSLDVYAWEERSLLLRKCYRLQNKRPLPLYGFINNLLCDDVSIVQLMRDGHGPYSLIAYALNICS", "length": 466 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7ELE5-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "gene_name": "Ndufs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RRTVVYTARARSQEKSGSEPLSLWFRFPLVSIWALDQNRNSLEDGPQRLSEGRGQDGGAGGSWLALCTDPGSAHRHSGSAAQSPPECGSHWEPEQSAVSKAGAGAVVPKPSHLPRSRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR", "length": 271 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7F947-1", "protein_name": "Beta-defensin-like domain-containing protein", "gene_name": "Spag11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLSQRPPNVFRHVVDFLKKNQTHITQACSGNSGGRKASSSDLCGCALCLEAPSPHSQLSYKRACSSCPPTRGSSVPAVPSTAMKQRLLPSFVNLLLAALLLPGKAETWLRSWTQALSAVVTLGSSSASSINHLVTEPPSSPQDEFPAQGGNGSGLLHHRVKRFPPRTPPYHEPGPNYQIVNCKKNEGFCQKYCNFMETQVGYCSKKKEACCLHPF", "length": 216 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7FNC4-1", "protein_name": "Interleukin 36, gamma", "gene_name": "Il36g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSKYPHSPCTASGKETPDLGQVSDVDQQVWIFRDQALVTVPRSHTVTPVTVTVLPCKYPESLEQGKGTPIYLGIQNPDKCLFCKEVNGHPTLLLKEEKILNLYHHPEPMKPFLFYHTLTGATSTFESVVFPGSFIASSKIGKPIFLTSKKGEHYNIHFSLDII", "length": 164 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VPX6-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A1", "gene_name": "Speer4a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVNGRETREGRKDANLPPESNEGRRRWTWRMWMAHRQTTSSVPVTSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHNLEMENMEARENKQEFKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQERLVELNLSCKDEQEKTSNLETQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHTQNPPSSSDESSSDESSYSTCPAWE", "length": 267 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F8VQM2-1", "protein_name": "C-C motif chemokine ligand 26", "gene_name": "Ccl26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFFDLGLLVLLAIFLSVQLGVATCGSSIAMSCCPNFSYYVIPWSWVYSYKFTDKSCTSDGVIFFTKTGKQFCVQPGAKWVQRFISLVNTRNHL", "length": 93 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3GSG1-1", "protein_name": "Ferritin", "gene_name": "LOC100767129", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGFLRKSHRRQRHRCPLRVSRATVAYPLVFMTPPIISPPSQVRQNYHFDCKTAVNNHVQLQLHNSSVYLAMAFYFDSEDVAQKNLASFFLNKSHECTAQAEMFLELQNQRGGRISLGSIREADRNNWLGGLQAMECALQLELSTNQSLVALHQLASSKSDAHLCSFLKNHFLTKQVEVLKEISGYVTKLRQMGSPDDGIAEYLFGKLTLDDNKGK", "length": 215 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3GWA3-1", "protein_name": "60S ribosomal protein L18a", "gene_name": "LOC100764432", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKASGTLREYKVVGRCLLTPKCHTPPLYLMRIFALNHVVAKSRFWSQLKKMKSSGEIVHCGEVRPEVPLQVKNFAIWLHYDSRNGTYNMCREYWDLTVTQCYRDMGAQHCARTHCIHIMKVEEIASGKCQRPAVKQFHDSKIKFLLPHRVLRCQHKPHFTTKRLNTFF", "length": 168 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H156-1", "protein_name": "Prefoldin subunit 4", "gene_name": "LOC100773780", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVATMKKAAAEDVNVTFEDQQKINKFARDTSRITEQKEIEVKKNHLQNLEDTFNDIMLADGDCFMTQYLIRDVLISHSQEEAQEMLEEAKKTLQEEIDALESRVGAIQWVLANLKVQLYTKFGSNINLGVDES", "length": 133 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H2T6-1", "protein_name": "Histone H4", "gene_name": "LOC100757199", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H8X2-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase gamma", "gene_name": "Agpat3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGLLAYLKTQFVVHLLIGFVFVVSGLVINFTQLCTLALWPISKQLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDIVKEGLQCLSDYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLPRTKGFTTTVQCLRGTVAAIYDVTLNFRGSKNPSLLGILYGKKYEADMCVRRFPLEDIPADENDAAQWLHKLYQEKDALQEMYKQKGVFPGEPIKPARRPWTLLNFLCWATILLSPLISFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE", "length": 376 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HAB3-1", "protein_name": "40S ribosomal protein S15", "gene_name": "LOC100759804", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVEQKKKRTFRKFTYCGVDLDQLLDMSCEQLMQLCSTRQRLLLNCSLWRKQHSLLKSLRKAKKKVPPMEKPEVGKTHLRDMIILPEMAGSMVDVYNGKTFNQVEIKPKMIGHYLGEFSITYKPVKHGGPGVGATHSSRFIPLK", "length": 145 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDI6-1", "protein_name": "Lipid transferase CIDEB", "gene_name": "Cideb", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEYLSALNPNGLLRSVSTMGSELGRRVWNSGPPPQRPFRVCDHKRTVRKGLTAATRQELLDKVLETLLLSGVLTLVLEEDGTAVESEDFFQMLEDDTCLMALERGQSWSPRSGMLSYGLGREKPKHSQDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGVGPKKVLRELLRWTSSLLQGLGHMLLGISSTLRHVVEGAERWQWHKQNHLRS", "length": 219 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDS5-1", "protein_name": "Histone H3", "gene_name": "LOC100773314", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HGI3-1", "protein_name": "PHD finger protein 6", "gene_name": "Phf6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSSIEQKKGSTRQRKCGFCKSNRDKECGQLLVSENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEETFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDSRSTSSHGTDEMESSSYRDRSPHRSSPNDTRPKCGFCHVGEEETEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN", "length": 364 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HJW3-1", "protein_name": "Calcium homeostasis modulator protein 6-like", "gene_name": "LOC100774768", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKFKAVLDLQSKHRSALGYGLVTLLTAGGEKIFSEVVFQCPCSATWNLPYGLVFLLVPALALFLLGYALRTRTWRLLTGCCSWSASAQSSSGLQRVFVCAQISAAAALPPLTWVAVALLGGSFYQCAVSGSEAMARHLCKGRDPSCAAKLPQVPCKKQEAEMQDILSQLKAQSQVLGWILIAAIIILLLVVKSVTRCLSPVSYLQLKFWEIYLEKERQILQGEAMEHATQLAKENVRCFFDCTNPKDCSTPSSKAWQQISALYTFNPKNHFYSMLHKYVNRKDMSGSLRSVEGDAVVPVLGFVDASGMATTHGV", "length": 315 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQ40-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "LOC100767578", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLGSSSDSAPDCWDQVDMEVPGSAPSGDGFTSASTAAAEAAEAEAQRQHLSMAFSSQLNIHAKPFVPRVSAAEFVQSFLPGSAQPPAPTTSSSDETCTGAGDPQGKRLGWGAPVEPSKDGPLMSWEGSNSAVTMELSEPVVENGEVEMALEESWELKEVSEAKPGGSLGDSGPPEESGKEMMEEKEVIRKSKSMAIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD", "length": 631 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQN5-1", "protein_name": "Transcription factor 19 isoform X1", "gene_name": "Tcf19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPCFQLLRIGGGRGGDLYTFHPPSRSGCTYRLGCRADLCDVALRPQQEPGLISGVHALLHAELQGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGQAGTSSSEFYFMFQQVRVKPQDFAAITVPRSRGEAGTGFQPMVPSQGAPQRPLSTLSSAPKATLILNSIGSLSKLQPQPLTFSRGGGRPQSLAVPTQPGEVGASPPAPPTRNRRKSVHRVLAELDDENETSLSPLSVLMEPRKKLRLEKAALVSSGRD", "length": 266 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HWQ5-1", "protein_name": "Zinc finger protein 219", "gene_name": "Znf219", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGSRPRILVGHLEPSPPAFDGELDLQHYSNGPGVSTGSPGMGAVGWSETRAGERRFPCPVCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLLLELEERALLREAQLGRARSSGGMQATPATEGLARPQVPSSSAFPCPFCKGKFRTSAERERHLHILHRPWKCSLCSFGSSQEEELLHHSLTAHGASERPLAATSTPEPQPPPQPEPRSALEPEPEPEPRPEPEHEANPAPTPAPPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHTSKLGPLRAPGPGSTPARAPQPPDMSLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSVRAGEVRPNGEGADPGAGRSYGGGFRPLPSALPNRARRHRTEEPEEEEEVVEAEEESWARGRSLGTLTSLHPHPGEGSGQSAPAVGAQARPTGTQEENGLLVGGARSEAGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSSAGPGPPPEPPPPSPRGAASLQPQSGAKPTQASATWVEGTASTRPSSSGTGAGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGSGGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRQPRADTSPPYVRAPSGETPPSPPLEEEGSPGLSRSGEAGLGGQER", "length": 725 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I071-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "LOC100753244", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKIKARDLRGKKEELLKQLDDLKVELSQLRVAKVTGSAASKLSKIRVVQKSIVRVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMHRQLTKHEEKLKTKKQQRKERLYPLRKYAFKA", "length": 122 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I1Z3-1", "protein_name": "DNA damage-inducible transcript 4 protein", "gene_name": "Ddit4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSLWDRFSSSSSSSSSSSSGTPATDRPPRSAWGSAAREEGLDRCASLESSDCESLDSSNSGFGPEEDSSYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVAQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLLSSANSSLVPGYSQSLTLSTGFRVIKKKLYSSEQLLIEEC", "length": 231 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IAH8-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "LOC100755128", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASNNTASIAQARKLVEQLKMEANIDRIKLSKAAADLMACCAAHAKEDPLLTPVPASENPFREKSFCTIL", "length": 70 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IG76-1", "protein_name": "Olfactory receptor 7E24 isoform X2", "gene_name": "LOC100765597", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYILALFGNLLIILTVSSDSHLHTPMYFFLSNLSMIDIGYISTTVPRVIVDIQTHCPVISYVGCLTQMSLIIIFACMDDMLLSVMAYDRFVAICHPLYYQVIMNPSSCGVLLLGSFLLSLVNLLLHYVAVLSFSNCEDIFEISNFFCGPSELFKLACFDTFTTNIVRYCAGALFGLLPISGIIFSYFKIVSSIMRSSSSSNGKWKTFSTCGSHLSIVCLFYGTALGMYFSSSLSLSPKTNAVASVMYTVVTPMLNPFIYSLRNKDIKTALRKILSRTF", "length": 278 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IGD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100770882", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGANSSSLTPEFFVLNGIPGLEDAHVWISLPFCFMYMIAVVGNCGLMYLIGHEEALHRPMYYFLTLLSFTDITLCTTTVPNTLCIFWFNLKKIGFKACLAQMFFVHTFTATESGMLMLMALDRYVAICYPLRYGTILTNPVIAKASLATFLRSVAFILPFTFLTKRLPYCRGNTIPHAYCDHMSVAKISCGNVKVNAIYGLLVALVVCAFDIFCITVSYTMILRAVMNLSSADARHKAFSTCTSHICAIVITYVPAFFNFFTHRFGGHTIPHHIHIIVANLYLLLPATMNPIVYGVKTKQIRESVIKFFSGDKSGITEIKGLQNK", "length": 326 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3INQ1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100763177", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFCNTSTPGHSTFLLTGFPGLEASHHWVSIPINLICVVSILGNSIILFLIRTDPALHEPMYIFLSMLAASDLGLCASTFPTMVRLFWLGIRELPFDLCAAQMFFIHAFTYVESGVLLAMAFDRFIAIRDPLHYATILPHSAVAKVGAAVLIRAILLNLPGPILLRRLLFPQVSVLSHCYCLHCDLVGLACSDTRINSLVGLVSILLSLGLDSSLIMLSYVLILRTVLSIASPGERLKALNTCVSHLCIVLIFYLPKLGLSVLHRVEKHSYPALAVLMANLHFLVPPFMNPVVYCIKSKQIRQGFLKRFQQKRVDVS", "length": 316 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MYE2-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFVKVVKNKAYFKRYQVKFRRRQEGKTDYYARKRLVIQDKNKYNTPKYRMIICVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAVAYCTGLLLACRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGALTCYLDAGLARTTTGNKFFGALKGAVDGGLSIPHSTKQFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLTEDEDAYKKQFSQYIKNNVTPDMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLGQENDRVAQKKASFLRAQERAAES", "length": 295 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3MZM9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC107131211", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELRRRLLIIVIGTLITGYMVTCTCLLHYRCDSKEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3UW31-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r176", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVTLQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQFVTLAPGTWGRVMLPGRAPNFLRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDSNSKSKWVCSTSGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFVDSRVWLRRVKEILSVSFPTFSPLLLIFRDPKDPCSLLFGC", "length": 304 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3UY92-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r158", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQLLLLCQFGVGTVAKVFLFVRNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVARSTNLCSTCVLSFHQFVTLVPLNRGKGKLVLRASVTNMASYSSYSCWFFSVLSNIHIPIKVSGPQIKDNNTDSNRKLFCSTSGFSVGTVLLQFAYDATFMSIMVWASVSMVLLLHRHRQRMQHILTPNQDARGQAESRATRTILMLVVTFVSFYLLNFICIMLHALFMHSHFFVRLVSEILTAVFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3V9M0-1", "protein_name": "Cystatin S like 1", "gene_name": "Cyssl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACLLYTQLFLLNTFILFLNLSLNPVLGQILAGIEKSIIEEEGALEALNFAVSEYNENNSDLYLSRVVEVKTVKTVQQQIEAGKTLLFDVILGKTACLKTQDDLSDCPLNEPTDLQEREFCSFEVHLPDWANAINLLSSICNRI", "length": 144 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X693-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "RVFLPLLLLGVILPGGDNEDGPTSFHLIQISTFVNNTWAQNQGSGWLDDLQIHGWESDSGTAIFLKPWSKGNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGCELHSGEAIESSLRGALGGLDFVSIQNHSCVPAPDGSSRGQKFCALTTQYQGISDIIERLLSETCPRYLLGVLDAGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDLMPIGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSLILLICLAFGVLRFMGSHRIGHD", "length": 317 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9Q9-1", "protein_name": "Predicted gene 6526", "gene_name": "Gm6526", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGDQGETRPRQKESAIPSCKKRRMKSFWGRHMSAGKKSSQNCNITNHMKNMNKLEDMKFYIRKINAKRLELFPILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKMTQSISDTIETYKEFIEDKDSYSFTHSYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEEKRFCDESSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G5E8X8-1", "protein_name": "Oocyte maturation, alpha", "gene_name": "Omt2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTLVFTKVHLESWVYKGLRGQHDSILELLKENLHHYLCIEFDEGLNDTVVYIIGFKFFAMFAMFVIVSLACNLRTKRNRARAWARGLQSPVWWNRRYFI", "length": 100 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ46-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLSFMSSLLENILYFQAGLGVLANIFLLVFYIFIILGHRPKPMDLISCQLTFVHIMMFLAGENFWLANIFESLNVENDFKCKATFYTKRVMRGLSICITCLLSVFQAVMISHRNSLLAKFKHKLKIYMINALFYIWTFNLSLSSNLIFYVGGFTNMSQTKQLKVTKSCSLIPMNYIIRGLILTVISSRDMFLVGVMLTTSTYMVIILCRHQRQCKHLHSTSHLRASPEKRATQTILLLVVFFVIMYWVDFIISSTSILLWMYDPVIMIVQKFVVNAYPAITPFVQISSDTRVIRVVKNWHS", "length": 303 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ88-1", "protein_name": "Vomeronasal 2, receptor 3", "gene_name": "Vmn2r3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMAIRKKCLILELTVFLCVELYAQYEDQNMTCRLMRKFNLTGYVEAENHHFVIGGQFPVHYRTIPTSDSDEEPESPMCEGFNFRGFRWMKTMIHTIKEINERKDILPEHTLGYQIFDNCFSTTKAMESSMVFLTGQDEYKPKWRNSTGKYLIGIIGAGGSTMSLAGARILLLNDVVQVGYASSSSILTEYLNVYRTIPSDKFQTEAIVNLIRHFGWVWIGAIASDDDYGKHGVKSFRKILETNNLCIAFSETIPKVYSNEKMQIAIDAVKSSTAKVIVLYATDFDLSPFVLEVIHHNIAHRTWIATEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDHLCTGKEKLKDLKNTYLDTSQLRITNNVRQAVYLMAYGLDRLIRVLIKEYREYLLHPKILAFMSYKLFEYIRKVKFTTHDGRKIELNVHGDIENGYYDILNWQMDNTGDIAIVKVGEYKFTRSKYELVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGFITGQPVCCFDCIPCEDGYVSEKPGQRLCNPCSEDDWSNAEKNKCVPKHVEFLAYEEALGFTLVILSIFGALVVLAVTVVYVIHRHTPLVKANDRELSFLIQISLVITVLSTMLFIGKPCNWSCMARQVTLALGFCLCLSSILGKTISLFFAYRISISKTQLISMHPSFRKLIVLLCVFGEIGVCASYLVLKPPSMFKNIERQNVKIIFECNEGSVEFLCSIFGFDVLLALLCFVTTFMARQLPDNYYEGKCITFGMLFFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGCLFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTMVSTVLDE", "length": 909 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BKT1-1", "protein_name": "piRNA-mediated silencing protein C19orf84 homolog", "gene_name": "Gm52993", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPTHLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRPPRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPSTPPVTPPSQDGQKEAGGLSEDWEADY", "length": 185 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BLP0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLTNILYFQAGLGILANTFLLCFYTFTILCHRSKPMDLTSCQLTLAHILFLLAGGDNWLAVILESLNIENDFKCKAIFYTNRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLKTYIIYAVFYIWFYNFLVCSHLLVYVGGFNNVSETNQMRVTESCSLFLMNYIISGLIFTVTTFRDVFLVGVMLITNAYIVIILFRHQRHCKHLHSIRHLRVSPEKRATQTILLLMVFFVVMYWVEIIISSTSLLLWMYDPGFLTVQKLIVTVYPTITPLVQISSDKRVINVLKNLQSKCQQIF", "length": 302 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "I3ITL1-1", "protein_name": "Gap junction protein", "gene_name": "gjc4a.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSWDFLTHLLDEISNHSTFVGKIWLTLLIVFRIVLTVVGGETIYDDEQSEFVCNTLQPGCKNVCYDAFAPLSHVRFWVFQIIMISTPSVMYLGFAMHKIARMADNEYQPRKHKMLSTVHQRMNRDYDMVDEMTEEVPMIPEEIEPSEKDNKSAASTKTTAASDAAVKHDGRRRIKRDGLMKVYVLQLISRVAFEIAFLFGQCILYGFEVSPSYICTRSPCPHTVDCFVSRPTEKTIFLLIMYVVSVLCLALTVLEILHLGIGGLRDSFRSRANRRLPVHRPSTSTICHRLSSAPPGYQAVQKKYSSGKLKAEFLSDSGRESLADDNTTRDLDRLRRHLKIAQQHLDQAYHTEEVGASHNSGPDSKSIAAEQNRLNQAQGGFGSTEEKVFKEAHA", "length": 394 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3L8A5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "FPSRQERTMRRENQSSISEFLLLGLPIPPEQQGVFFALFLGMYLTTMLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFSSVTVPKMLMNMQTQDQSIPYAGCVTQMYFFMFFACLDNFLLTSMAYDRYVAICHPLRYTSIMRGGLCTLLVTVSWILSCANALCHTLLLAQLSICAENTIPNFFCDLGALLKLSCSDTSFNDLAIFIAGVATIMLPLLCILVSYGHIGATILKIPSTKGICKALSTCGSHLSVVFLYYGTIIGLYLVPSSSTSSHKDIVASVMYTVVTPLLNPFIYTLRNRDMKGALEKLFHKAPVLS", "length": 320 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3L8Z8-1", "protein_name": "LRRC37A/B like protein 1 C-terminal domain-containing protein", "gene_name": "LOC100514982", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNVAEADIPPGHLKTHTGNPPVNPESGTSGYTNKLRQLRFLENLLDAEIQEKIDEVMKKEKTAMLIYSNILSPKLRRQILRKKLETARTQAESLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVYSRRRTLREGKVGRRRGFFGFLLRKRRSGESESEGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGAGEVSEAPADVILTIESDVEDLGEETDTAPEGPPE", "length": 799 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LBH4-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPPKFNPNEIKAMYLRCTSGEISAKSALAPKIGPLGLSPKEVGDDIAKAAGDWKGLRITVKPTIQNRQAQMEVVPSASALIIKAPKELPRDRKKQKNIKHSGNITFDEIVNIARQMRRCSLARELSGTIKEILGTAQSVGCNVNGRRPHDIIDDISSGAVECQAS", "length": 165 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LC12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFGANLTIFHPTVFILLGMPGLEIYHTWLSIPFCLMSIVAVLGIGALILVVLSESTLHEPMHVFLSMLAGTDNLLSTTTVPKALAIFWFHAGEIAFDACITQMFFIHVAFVAELGILLAMAFDRYVAICALLRYTAVLTPSTIVKLTLAIWGWGIGTIFPIIFLLKRLPYCRTNIIPHSYCEHIGVARLACADITVNIWYGFSVPMASVLVDVAFIAVSYTLILQAVFRLPSQDAQHKALNTCGSHIGVILLFFIPSFFTFLTHRFGKNIPHHIHILLANLYVLIPPMLNPIIYGAKTKQIRDSLAHMLSRVGMS", "length": 315 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LEQ2-1", "protein_name": "All-trans retinoic acid induced differentiation factor", "gene_name": "ATRAID", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARPGFRSPSSLVPRAAALLLVLSVPRALALPEICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQRTFATALGTQKRVLRMDLVLLMVLVSCSVFVLMASMATSVCARAHSHCSCSSVFWDPQHYPFPSCFGGLNAEKPRLHEPQRSSY", "length": 236 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "J3QM75-1", "protein_name": "Secretoglobin, family 2B, member 19", "gene_name": "Scgb2b19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLITGELSFQTTEACVPFFEGYASVVSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMG8-1", "protein_name": "T cell receptor alpha variable 13N-3", "gene_name": "Trav13n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRLLCSLLGLLCTQVCWVKGQQVQQSPPASLVLQEGENAELQCTYSTTLNSMQWFYQRPGGRLVSLLYSPSWAEQRGGRLTSSAASNESRSSLHISSSQITDSGTYLCAME", "length": 112 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QML3-1", "protein_name": "BTB domain containing 35, family member 29", "gene_name": "Btbd35f29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHQGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKKVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDALTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMQ9-1", "protein_name": "Predicted gene, 20873", "gene_name": "Gm20873", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRESSSNTLRNIVGRRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPGLYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANLSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMS5-1", "protein_name": "BTB domain containing 35, family member 2", "gene_name": "Btbd35f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEDIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKKVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW5-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADIILKYSPDEARSLKAYGELPEHAKINEMDTFGAGDDDEIMFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW9-1", "protein_name": "BTB domain containing 35, family member 6", "gene_name": "Btbd35f6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLQTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QN64-1", "protein_name": "BTB domain containing 35, family member 22", "gene_name": "Btbd35f22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QNQ5-1", "protein_name": "BTB domain containing 35, family member 24", "gene_name": "Btbd35f24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKDTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIYDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP08-1", "protein_name": "Histone H2A", "gene_name": "H2al1k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTRSQRGELPLSLVDRFLREEFHSSRLSSSALSFLTSVLEYLTSNILELAGEVAHTTGRKRIAPEDVRLVVQNNEQLRQLFKPGGTSVNEDDN", "length": 105 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP87-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCNIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINETDTFGAGDDDEIVFDDIGDEDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP96-1", "protein_name": "PRAME like 3C", "gene_name": "Pramel3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLRILDLRQDAGCKTVCPDISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKELSLSSFCLTDHLETVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD", "length": 463 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QPI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLTKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGAGDDDQIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QQ02-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLESMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7GP63-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL", "length": 51 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "K7N5V5-1", "protein_name": "Predicted gene 5862", "gene_name": "Gm5862", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N660-1", "protein_name": "Predicted gene 10220", "gene_name": "Gm10220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARKLGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPSWE", "length": 267 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r168", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNGAMKTTEEVALQIVLLCQFGIGTMANILLFVHNFSPLLTGCQLRPKEVICANMAVSSILILFMTVFPNNVFVAQRNLLNDLQCKLEYFVYMVARSTNLCSTCVLSTYQFVTLVPGNFSELMVRGRSPKVISYSCCSCWLFGILYNVYIPMKVSGPQNRHNKTSTKSKWVCFTSGFSVGIVFLSFAHDAIFISIMVWASVSMVRLLYRHYQRLQYIFPPHQGNRGYAEIRAAHSIVLLVVTFVSFYLLHCICFILHIVFVDSNLWLRHIGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYKKPVI", "length": 309 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Gm10670", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANDFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSMHQFVTLVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATNTILMLVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNLKHRRQLH", "length": 321 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6G6-1", "protein_name": "Predicted gene 16440", "gene_name": "Gm16440", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLCQKENGDEGEIRTTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKITKQRSKINELEELKLDMRKISNDMEEMGGILELYIYEDLNYRMNTEFNIIKSQHEKTMLDMNEMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLSEKVRILLNENRKLLVEQAGTQLSHEEEKRFCEEASKNICASSAKEQQCVNSSRNRNMAQTTT", "length": 218 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6J5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r127", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLTAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6P1-1", "protein_name": "Reproductive homeobox 2H", "gene_name": "Rhox2h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKRSINYLLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGPAAPVAGLMDNSNQEDLSATGCAQEKETQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPKFRHLWRHNFNVLQLQELESIFQCNHYISTTEENRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6T9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r175", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGFGTAVNIFLIVHNLSPILNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCFLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVNGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFLDSRVWLRRVKQILDVSFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6U2-1", "protein_name": "Predicted gene 3542", "gene_name": "Gm3542", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSNITNQISNINKVEELKLHIRKTSNERKEMCGILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRKLLVEQAGTQVSCEEERGSLRRPARTSVPQVQRNSSFPKCETVQQKLEHGTDHDMISLKEKCWWKRTGCAQEIHHCCLSSLITMAVMGCMLLLYFGFLGMNRP", "length": 270 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W5-1", "protein_name": "Predicted gene 17019", "gene_name": "Gm17019", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRDTREGRKDADLPSERNEGRRRWTWRMWMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTTEETNELRDRLIYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQELKKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSVKDEQENSNLETPEYQVSEAARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI", "length": 255 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r170", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGVGTAVNIFLIVHNLSPNLNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHHRLQHIQSTNQKLRVHAESRASHTILMLVVTFVTCYHLDCICTFCNISFLDSQLWLRRVKQILDASFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r94", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVIFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r103", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Y3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSIILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFYIHSRLFIRLVSEVLAAVFPSICLHNGVLLSY", "length": 295 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Z0-1", "protein_name": "Predicted gene 17026", "gene_name": "Gm17026", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "XRSSWVPKQACCPCSSGYFRERIEYTQTPDQGRRRPAAHHGGKGQETTGHGEGSAGAASPQAPTINDQEKRHERLEKLKRELQNIKNARDELQGILANYTNKDLNDRINFETFMLQMQHDQVMTDLKRMPQDISEALYKCKQLTKENQFYCFRNCHLLIESNLIQHKVRMLRKENRQLLREQIALEECNIETKILCKEGSQKIKDHYTKQQQI", "length": 213 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N701-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r159", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMSVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNTRGQAESKATRTILMLVFTFVSFYLLNFICIIFHTLLMHSHFFIRLVSEVLAAVFPSISPFLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N708-1", "protein_name": "Predicted gene 10128", "gene_name": "Gm10340", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSVI", "length": 205 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N731-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r57", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALNILLLCHVVVGTVGNILLFVHNFSPNLTDSRLRPIQVILINLAVANAFMLLFSTYSYDLIDFVPRKPPTDLKCKLAYFFHMVARGTIMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVSYSCFSCWLFSVLNNAYIPMNVSGPQKSHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFLGIMAWTSVSMVIHLNRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCIIILFHITFVESRLSLRHVTKLLSLSFPTISPLLLIFREPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N744-1", "protein_name": "Predicted gene 8104", "gene_name": "Gm8104", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNMNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIDFTIIKSQHEKTMLDMEKMTQSISDTIEKYKEFIEDKDSYSFTHTYLLKECNQLKEKVRMLLNENRKLLVEQADQETSYGEEKRFCDETSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N751-1", "protein_name": "Predicted gene 3696", "gene_name": "Gm3696", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPQEHLCPKCQGTAV", "length": 203 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N757-1", "protein_name": "Predicted gene 3667", "gene_name": "Gm3667", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRRLLVEQAGHKCPVGKKRGSLRKPARTSVSQVPRNSSVK", "length": 205 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7F4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r260", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGNSLKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVVRSTNLCSTCVLSVHQFVTLVPLNRGKGKLVLRASVTNMASYSSCSCWFFSVLSNIHIPIKFSGPQITDNNTDSKRKLFCSTSGFSVGIVFLQFAYDATFMSIMVWTSVSMVLLLRRHRQRMQHILTPNQNPRGQAESKATHTILMLVFTFVSFYLLNCICIIVHALFMHSHFFVRLVSEILTAIFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r163", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVMTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLKFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPNICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r242", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7H2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r256", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILGHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSLLVARSTNLCSTCVLSIHQFFTLFPVSRGKGKLILRASVQNLASYSFYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDDTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATHTILMLVFTFVSFYLLNCICIIFHAFSIHSCLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9JA28-1", "protein_name": "Interferon lambda receptor 1", "gene_name": "IFNLR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWRIRVLATLCFLWQPRVHGQLPPPQNVTLLSKDFDMILTWTPGEGSPPDVLYTVRYESKTRMDKWIKVPHCRNIHSVSCNLTCVIPNFFIKFRAQVKATSGRFHSPWVKSQFKEYHLDVELAPPLLNVNVKENVIHVNATFPMAICVESLPWMYDFNLWEAGSEDKKQYKSIFRKKAVTIDTTALRGNYCFNARSSIQSIDFKHSKFSQPVCMQLNYEGEWKFPFSATIPVFVLLILLTSASIIWLLKQDAKHKKMPQTLDLSNCKIAGPTFCCELRENEFLTDCLICTDKPMSQGKKNKTLAQNNQMWMASFLPSSSSEEEEEEEEEDSSSFIPYTEMLQFPRKHFNFQTPRTADAETILDSTSGVLSVVGGSTLDLSALGFSFFPIRKNEMDTSGSQGNEKASHSHSSSLGRISLTDVRFPGPREHGQHGTDSNDCLEVSLLHTLMNSSCTRLPADEHCLYKKDHDFTICYQKPTLDQPVQVSENPLLNEDPSMEKFIYLQTLQVAEDEGFASDCDSGNFTEGTPPASTVLSDELRISDMEKRYDKKFKFKGYQHSHYMRRS", "length": 567 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "L7MU37-1", "protein_name": "Reproductive homeobox 3H", "gene_name": "Rhox3h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEESRNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU51-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a76", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQSNNVTEFVLLGFTQDPAGQKALSVMFSLIYIVTMVGNLLIVGTVIASPSLGSPMYFFLASLSLMDAIYSTAITPKLIVDLLCEKKTISFRACISQLFIDHLFGGVDIVILLAMAYDRYVAICKPLHYLIIMNRRVCILFLVMAWAGGLAHALFQVLAVYNFPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLSIIGNNGAMCIVIFTLLLLSYGIILRFLKNHSQEGRRKALSTCGSHITVVFLFFVPCIFMYVRPVSSFPIDKFITVIYTIVTPMLNPLIYTLRNSEMKNSMEKLLQKTLSPSRIRLSSCCLCY", "length": 318 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU81-1", "protein_name": "BTB domain containing 35, family member 17", "gene_name": "Btbd35f17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANTWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU83-1", "protein_name": "BTB domain containing 35, family member 18", "gene_name": "Btbd35f18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDQVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MUB9-1", "protein_name": "Reproductive homeobox 2G", "gene_name": "Rhox2g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGLAAPVADLMDNNNQEDLGATGCAQEKEKQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPEFLHGWQQSFNVLQLQELESIFQCNHYISTTEAKCLARSMGVSKATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X6-1", "protein_name": "F-box/WD repeat-containing protein 15", "gene_name": "Fbxw15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFFIDRIWQERAKFRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVITWKSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLIGDTLGNIHIFRIPDLYLISTVNVLPYGFDGIYCSPQKKWVLLSKKHPHILPKVFYMSSFLRTSEFSAPVSTVLKLSLYERVFWTPRREDRITLMSRSGFPQVKMFETYDIKLEEFGNKRIVKGKLIASFELQCHKVNPQRFGVSDKNVIVCSTESSLLLFDINGLRLKTFQYCPEMIVKLSVDPLHVIVICNTGSMDVYAWEERSLLLRKCYRLHIERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS", "length": 466 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X9-1", "protein_name": "Demilune cell and parotid protein 1", "gene_name": "Dcpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSAPEGKNITSIRVFLKGRLIVGIQLNYDDNKDGQVYGSTAGKEMVARLSKEEHIIAAQGTYTPSALTQIIFTTNQPRQLMVGYYVGNSEYSSFPNDPSHVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 171 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y3-1", "protein_name": "PRAME like 51", "gene_name": "Pramel51", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIHSKERKYRLGLLEPGVTAFPCPNMVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSPGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFTLGDSEKLDEETIFSLISQLPTLHCLQKLYINDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPFCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELVSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVEL", "length": 520 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y5-1", "protein_name": "Olfactory receptor", "gene_name": "Or11g25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLSSPSNSSTITGFILLGFAYPREGQILLFVIFFIVYILILMGNASIICAVYCDQRLHTPMYLLLANFSFMEIGYVTSTVPNMLANFLSDTKVISFSGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYSSLMTGRLRNTLVTSCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRVPLIEVFWSIIMSMLLVIPFLFIMGTYILVLRAVFRLPSREGQKKAFSTCGSHLTVVSLFYCSVMIMYLSPTSEHEAGMQKLVTLFYSVGTPLLNPMIYSLRNKDMKNALQKILRT", "length": 311 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N227-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r125", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSMKTTEEVALQIILLCQFGIGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFARKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N255-1", "protein_name": "Predicted gene 3099", "gene_name": "Gm3099", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCLKGNGDEGETRPKKKEEGILSHEKGRRKLFWRRHRSARNTSTQNSNITNQISNINEVEELKLHIRKISNERKEMCEILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMTQFIIGSMQYSMELIEDNYSYSIKEDHLLRECTQLNKKVRILLNENRKLLVEQAGTQVSCGEEKRFCEEASKNICASSAKEQQLP", "length": 205 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N259-1", "protein_name": "Demilune cell and parotid protein 3", "gene_name": "Dcpp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSTPEEKNITSIRVFLQARSIVGIQFNYDDKDGQVYGSTAGKEMVARLSKEEHITGVEGSYSPSALTQIVFTTTQPRQLMVGYHVGIYQYSSYPDDPSFVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 170 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N270-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVIFKC", "length": 307 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N273-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r118", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSVHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N275-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r169", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVALQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLHGRAPKFVRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKSKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSPNQKLRFHAETRAAHTILMLVVTFVTCYLLDCICTSLHISFVDSRVWLRRVKEILAVSFPTFSPLLLIFRDPKDPCSLPFSC", "length": 304 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N288-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r151", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQILLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2A6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r116", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVFLSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2B4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLGAVFPNICPLLLIFRDPKDPFSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2C2-1", "protein_name": "Predicted gene 2974", "gene_name": "Gm2974", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKERRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N474-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1E", "gene_name": "Speer1e", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "ARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNQKNKEVEIDWALIEKYLVDVNLNGRTGADQQP", "length": 154 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0QWR4-1", "protein_name": "Aly/REF export factor family member 14", "gene_name": "Alyreffm17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGMTRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQKQQQQLSAEELDAQLDAYQEMMDTS", "length": 261 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R3T3-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "ENSRNOG00000067174", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFLVLCLILSLGDYGAFPLIQSRIHRGCKGERHSQPWQVAMYHYDKAVGWGWHPSPTTMSTSPSHNKVRLGQHSLDADGDTGQDVPVRHSIPHPLYNRSLQMPTFLSPDADNSHNLMLRQLREPANTTEAVRVTEEPTEEAKLGSRCLASGWGSTRPDKCMPGMLQCVDLTLMSSDVCTYAYSQRVTESMLCAGHQEGSRDTCMGDSGTTLICDRMLQGITSWGGNPCA", "length": 230 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R777-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKSKEKTLGSHYKILSYLGQGSFGTVNLAWHLKTQALVAIKMLEISKETISSILSERAILETLHHPNIIRLFQVLITSSHVNFVLEYAPGGSLFELIKEGGPLQEEVAKKIFGQTVSAVKYCHNLDIVHRDIKPQNILTDAEGNGKLTDFGLATKFRPGTLLKELCGTKEFYAPELVLREPYNGKKTDVWSLGVLLYFISTGYCPFRGVTTKDMEKKIATGTYTIPTYFSGQLENLIHQILTVSPEMRPSIEDIEKHPWVRKCEVNIPTITCPDYKIVEMLCGMGYNANKILESLQKKKYDEPMAAYLILKDKVRQEIEHGTTTSDMPVDQGPLPPQSPAHHSVSGLPLKRRASEPNFGLLHIWPPGEQVARHNVARSVSMPPIALYGTKKQNSTSTSALHSRPVASPCVCNTILEIEIPLPTKQDFDMKTSSPPQRIGYFQRLCQRIRDCLSRLCCFLWAPKVHSPRKWLP", "length": 474 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9M1-1", "protein_name": "Olfactory receptor family 52 subfamily N member 1B", "gene_name": "Or52n1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLLNVSSLTPASLILNGIPGLEEVNLCIFFPLFTMYSIALTGNFGLIYLIYSEEVLHRPMYIFLALLSFTDVLMCTSTIPNTLFISWFNFKKIDFKACLAQMFFVHTFTGMESGVLVLMVLDLYIAMCYPLRYATILTNVVIAKAGMLTFLRGVALVIPFIFLTKRFPYCKGNVIPHTYCDHISVAKISCGNVQINAIYGLMVVLLIGDFDIPCITVSYTMILWAAVSLSSADARQKAFSTCTAHICAIVITYVPAFFTFFTHRFGWHTIPSHIHIIMANLYLLMPPTMNPIVYGVKTKQIQKRVIRFFFKGRENSSHKF", "length": 321 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9X6-1", "protein_name": "Paired immunoglobin-like type 2 receptor beta 1 like 2", "gene_name": "Pilrb2l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAWILLLLLLAACLHTGNSAGYQKTQDYGVNQPEQLTGIQGGSIEIPFSFYFPWELAKDPQMSIAWRWKVFFGEVIYNSTLLFLHEHFKGRLIMNWTQGQTSGVLRILNLKANDQSTYFSRIFLQATEGMKLWQSRAGTKLIIHALSTTMASPSIIPSAVPTAGLENTRGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWVIFLWWKQRLPTARISHQVSLHHTPCIPQSSMSSLWESELVAAGFSCESHSWITPTSAMGARIPSPWNQGPPVCLWA", "length": 289 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RAD6-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f19f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSTNQSSVSEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILVISTDSHLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILSSQAISFSGCLTQLYFLCVSVNMDNFLLAVMAYDRFVAICHPLYYTTKMTHQLCVLMVSGSWVTASLNALLHTLLMARLSFCGDNIIHHFFCDVTPLLKLSCTATNLNELMILTEGAVIMVTPFVCILISYIYITNAVLRVSSFRGGWKAFSTCGSHLAVVCLFYGTIIAVYFNPVSSHSSEKDTAATVLYTVVTPMLNPFIYSLRNNDLKGALRKVVHRKI", "length": 309 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RBH5-1", "protein_name": "Surfactant associated 2", "gene_name": "Sfta2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPSMCLFLLLTLLCSSLAGPTKVTLQVKLTEASQAKTSQDSGFLDMLQKICLLLHLSPGTNVTLHHKGPPHHLTCRA", "length": 78 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCJ6-1", "protein_name": "EF-hand domain-containing protein", "gene_name": "AABR07013776.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADQLTEEQIAEFKEAFPLFDRDGDQTVTTKELGMVMGSLGQNPTEAELQDMISEVDADGNGTINFPEFLTMMARKMKGTDVEEEIREAFRVFDKDGYTSAAEFRHVMTTLGEKLTDEEVDGMIREADMDGDGQVIYEEFVQMVTAK", "length": 147 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCP1-1", "protein_name": "Leukocyte immunoglobulin like receptor B3", "gene_name": "Lilrb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSTLTALAYLGLILGSENPVLSGAFTKPTIKMVPSNVVTTGKQVTIFCEGSSHAKEYRLHKEGSPDYLTPTTFLETENKAKFSISPIQWNNAGQYWCSYRSLTNKLRQSDIMELVVTGVILGEVTLSALPSYVVTSGRNVTLQCASQVVYDRFILMKEDEKFSTAMPSWKIYPVLWGAIFTLGPVTSNQRWRFTCYGYYLSSSLIWSKPSNHLELLVSGTLHKPILWAHPGSMVTSGSPVTIWCEGDQETQTYVLYRQGSLESWNRQTQKDYNNKAEFTIPSVTYLNAGHYFCYSYTSAGWSEHSDTLELVVTGVYKKPIFLALKNPIVNLGVTVTISCTSNQSFNCFLLMDDDQKIYRFFDLQYSYSGESLARFQVGPITSRQRWRFRCYGYYTDNPQVWSEASDPLDFLVSGNLQKPTLWAEPGSVIESGNSVTIWCEGTMETQIYFLYKEGSPSSWLRQTPKEPGNKAMFFIAFMEKHNAGQYRCYCYNFGGWSQHSDTLELVMTGVHHGKPTLSAFPSPMVTSGGNVTLYCASSTIYDWYIVTGQDLKFSRFQRAQFIPTEMSQALFSEISVASRKKGPFRCYGFNESTPHLWSEASNPLEIHVSGVSRKPSLLNQQGPVLAPGENLTLRCSSELSYDRFSLSKEGRSDLPQLSVSQSQTGEYYANFFLYSVDFSIAGQYRCYGASRFSSEWSAPSVPQDILVTGHPPITPSLSVNPGTIVSSGENVTLLCQSSIPMDTFFLFKKGDAYPYMHQRLKFQGPQCKAEFSLSAVTPNIGGIFTCFGSQSSSPYLLSHPSVPVEIKVSGLAKYQKSLIWVSVVFFLLFFVLTLFFFLRLWHQNKHRKGVQTKIDLQHPEGAVEPKSIVGHLQKSSRPAPAIQEEILCEKRWPGREITEVSASDATVKVTRSADNVELGILSQHQDDPSIHLYAQVKPARLRRAQTTSSSLFPKELQHSKHRQKNRDQVIDQQADTSQDSHAVIYAQLHIMTPRQGRQTSLFPGRIC", "length": 1008 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCQ2-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100361204", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQSSIP", "length": 328 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCW7-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb1l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAQLLLLLLSAACLHTGNSAGYPKKNVFSVDQPAVLSGVQGGSIEISFSFYFPWELAKVPQMSIAWRWKNYHGEYIYNSTQPFIHEHFKGRLIVNWSQGQTSGVLRILNLKENDKATYFSRVFLPTTEGMKSWQSVAGTQLIIIHAPSTTVVSPSIIPSVVPIAGLEDTRGKRTPSLLNLGAMVRMVVSKVVVIIALYGWVIFLWWKQRSAWSLLSFLTTWKSEEQMQMNTAPAPKEFK", "length": 252 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCY4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "AABR07000137.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSAPLGSLGRKSKNQSLGLDMLGTVLSTDSLSCTFTVKYRSSPGQCSVNGKPLLLFNDERQNSPVGKPEKKGNATKVCAELNQSLKDIFQKMMNLESWLFESKGNHTLQVTVQSQYNQGIFMDGCWVFTIDRQYPFYFYPKIMTWRESHPDASRTVSQWQNNRQVAQSLRTCSMGDFSQCLRKLLTDSREVPRSTITTLDPTQPSSAIQIPPTVDSASSVFTTWSQYIFVLILCLAILIINALIP", "length": 246 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RD07-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000064269", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRMMAMQMMTNSISDAMERYKELIQVNSSYNIRQSQLLREQAQLKNNIQILLNEKRELLVEETELPASSVEAKRLCEEAGMNICDPRAKQQQV", "length": 93 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RDP5-1", "protein_name": "Zinc finger protein 353", "gene_name": "Zfp353", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVAETPGASQTVPCNTQPSPVESSQLVSGQSSEMPTWKKTVMASACCNPQETACTQNSTAHPGKASDFYFGEPSETASFIQQVVSAEQKSSPAGSCLMNLSSTTKSCLSHPLKTEVLDTRKTLCNEGHWGRTLNSDKTLLIQITTMYESQWRTLGNHPVAPSGYHEGQAPNMDHLVDSVSNQTFIGDLEMEPSCNHVLYTDQFITSFSEQNPFGDQQRSPVADNRFYADQKILPNGYQTFYEPQMSTNYQITCVCGQNVCRCQEILLSGEHLLSEYQTSGYRYDQDLIVNLQVTSPIGGEPLHDSQIPNSNFDTTSCGTKRTTSSEEDNLAWHPETSLSSEETFLDQMRTSVDQNVYPSHNGTLKIEESLEPQVTSLSNQAPYVGESSDTSNSPLIQIQPQEISSASGLDQGQHPEIKLDLKTQSPVSLKNPHNSKRYCCTYQGCKKSYKKSQHLKDHMKKHTGVKPYMCNKPGCDWKFFRLVDLNRHKQKHSGERPYPCPMCNKNYSRFYYLKQHLRSHIQASPTTAT", "length": 530 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9MSI7-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG42818", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFIHQREQLPFKHNEQDPNYLAPVIQKRKPMDKDPRNPLKRLKFLQEFPTQSSKGDLDDLKYPTQLEGRHDSPKYDKTFHTEIHANNETDSQELENIILEKNLQDSKTEFQENRASQPKNMHSFQIPEAIESHFNNKELQNENDLHKGLKQQYRSGSEQDKSGPENVREIASKLILQWAENQRSLLDSFVKAITDVLKVHDSKLNMKINISPRDIMILKDMLKQLLESIMQLREGSTSTRARIVLNKWIETQKSLIDSFSQAIQNTNQNVDNIANVYEVMENLNKNLRELVILLSDKESFPTTESSSSQQTTSIYATTTFYLTSSTFGSTHPIVDENINRVNIMGNLIKGLRNIMVQMDETNKTSSSTSYTTTESTYIQPSTSTYLNAEVTTSHPTTSTYEVTNIITDESKIKDMFNLIKGIEDLISQYNGKHKFTSTTSLTGKSNSREPTMTTYSSAGGITSHSFTTTSPKTVTTSSSHSTTESSPSHPTTSNYEVTVFDQDSHKFKVMKNLIKELKGLIEHFSDTKNITSTTYSTGDSKSFQPTATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLNTTLSITGTTTPNLTTSTHDFKDQINDDDSKSLKHLIKILSDLVYSLNDKNNIKSTSQLTTESTFNSSINITNSTTVASSTFSTTESMAIHSTPYLSTREITVFQFNDVENINPIISNNSTTVTTNIHSSTYTTSTTDNTTSYPNLSTTESSPTFDSTISHSNTSSQTRSLGSYKDKIKNIVELLKKLRKIQKTLADKSKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELEILLSTTVNPNEDTTDLTMEKLLKLFDDFERMYNVLLDDSIQSTTQSTTQNNTIFSTTYSTIFSTTQSISTTSPTQYALTSSTPNTSTTSHSSTPSSINNLRSDESNNHQPIVDAIQQLKMALYHDFYAFKKSQEERMEKILQLLNGKPIDRRTKTIAKPRTIRKKVSREIQKRNSDVKEDKIHHYKADKFIKNPKNGNQDSHIPKPILNSARSKIKDVPLKLSAIKVNGGLKHLPSKRKANEEVSAMHEIFPEPVSILPHK", "length": 1085 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O08640-1", "protein_name": "Keratin-associated protein 14", "gene_name": "Krtap14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCNSCSGTFSQSFGGQLQYPISSCGSSYPNNVFYSTDLQTPITHQLGSSLHSGCQETFCEPTNCQTAYVVSRPCQRPFYSQRIRGPCRPCQSTFSGSLGFGSRGFQSFGCGYPSQGFGSHGFQSVGCGTPTFSSLNCGSSFYRPTCFSTKSCQSVSYQPTCGTGFF", "length": 167 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O21032-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "mrpl16", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIPNRQKFTKNHKRNLITKETRKTGLVLGNYGIKATETGYLKMKQMERIKGDLVKKLKDNMDIYFNFYPLFGLTNKGTARMGAGKGEVSEWYVLVKKGSIVVEFIKSRMTAGAMQKVIRYSANKWPIKVRMTQIKQGLYEKKI", "length": 144 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21042-1", "protein_name": "Cytochrome c oxidase subunit 1+2", "gene_name": "2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKILEIYDKQIAEKEGNIFIFISKWIISVDHKNIGTMYTNFSILAGIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIMVGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVGILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVLAGGLTMLITDRNFETTFFDPIGGGDPILYQHLFWFFGHPEVYILILPGFGLVSIILSKYSNKGIFGVKGMISAMSAIGFLGFLVWAHHMYTVGLDVDTRAYFTAATMIIAIPTGIKIFSWLATLWGGVIKITTPMLFVIGFLVLFTIGGLTGVVLANGGLDISLHDTYYVVAHFHYVLSMGAIFAIFAGYYYYYSIMNSTRLFGVVRYNEQLGRIHFWTMFIGVNVTFFPMHFLGLAGMPRRIGDYPDAYIGWNLIASYGSLITAFGLLFFVVNIFTPYIRRSVNIKNGAIILMGLDFARDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEIINPTVTIKIIGHQWYWSYEYGDNASNLIEFDSYMVYERDLAEGQLRLLEVDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFMPIKVQAVKLGEYFSKLNEK", "length": 764 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21049-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "cox3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKGFFENLFRQNVRSVINTGKKVGARAAAREIINQEWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGVISSKLGLLIALSSFIGGLVIWTISIIFDSLYDQQHTYEVKRGLVMGMMMFIISEVMFFFSFFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIYLKKRNKVIKTRLYFTLLCAVVFLACQGYEYFFAPFSMNDGIYGSLFFLLTGFHGFHVLVGSILIGIITIRFIVGNFNLLNVGTNFQIYKNKSTGFACTLFYWHFVDIVWIFLYIVIYWWGSR", "length": 435 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O23373-1", "protein_name": "Formin-like protein 3", "gene_name": "FH3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRLRLAFLAISLVVFVCVSEEIFSRGGLNLLRFSVYGEDVAEQTWIHQNPRRKLISYPKKFSVSAPNLAFGPAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQSVPGPPRPPPQREKKDDILMKLIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGPRDEGPLLRLSTGSTENSPTVASTSRKMFSVASSKKRSFLSRVSLKRNGHEFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDKMANPDQKMVWHEISAGSFQFNEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEEVVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFKRIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGDAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRLQSRSFSSVKTDDSNADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFLKTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSNQPSPDFRQRLFPAIAERRMDSSDDSDDEEDSSPS", "length": 785 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O35698-1", "protein_name": "RNA-binding motif protein, Y chromosome", "gene_name": "Rbmy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSPKDGLYSASRESYSSNTKIWGIPWRSWRKQI", "length": 380 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O60309-1", "protein_name": "Leucine-rich repeat-containing protein 37A3", "gene_name": "LRRC37A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSAQCPALACVMSPLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPEPWSSHSSHFPRESPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGELPLEPEQFLASQQDLKDKLSPQERLPVSPKKLKKDPAQRWSLAEIIGIIHQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISEQQQPVQPSESSREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTPPKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEMLSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFEGLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLIVPSHMACCLCQFKNSIEAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLSYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGKNRQRLNRVLMGPRSIQKRHFKEVGRQSIRREQGAQASVENTAEEKRLGSPAPRELKQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGAPSTSSPAKALPQVRDRWKDLTHAISILESAKARVTNMKTSKPIVHSRKKYRFHKTRSRMTHRTPKVKKSPKVRKKSYLSRLMLSNRLPFSAAKSLINSPSQGAFSSLRDLSPQENPFLEVSAPSEHFIENNNTKDTTARNAFEENVFMENTNMPEGTISENTNYNHPPEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPGDQFEIQLTQQLQSVIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLVSRTGHLMKLLSGQQEVKASKIEWDTDQWKTENYINESTEAQSEQKEKSLEFTKELPGYGYTKKLILALIVTGILTILIILLCLIEICCHRRSLQEDEEGFSRDSEAPTEEESEALP", "length": 1634 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O80489-1", "protein_name": "small monomeric GTPase", "gene_name": "SARA1A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALANVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYIK", "length": 193 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80614-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSDMRDERFFYHRYLSVTNRTTPTTATNLPTSTSNMRSTSLMTPRVAHTSMSSGGDFPDDRFFHARHQSATDRAASNRSRAIMPISTTNVPSSTSNSPRVLQTSMSRRGTSPMSSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVITSSEEVANTFTQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTSMSRRGTSPMSSSTRRNVQSSMSGRETVSSSTSTSSMQTSMSTPEIMPTSSRNVITRSEEVANTFSTQTPYIQFGRLWETNTTSSTRSRTTVPTSTTNVPSSNSSRVLQTSMSTRGTFPMSSSTRMSVQASMLAPGTVSSSMSTVEIMPTSARNMITMSEEVANSFTQTSYIQFGSLWETFKTVTKLSRVAMVENGECVICLEEWRKETYVTSSTSNMRTSSLMTLTRFIDEQISLRATVSSTRTTARLLTNESPATIRAVAMLPRVAMVEKGECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCRYKLSCVYKSFLML", "length": 535 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81153-1", "protein_name": "Proteasome subunit beta type-3-B", "gene_name": "PBC2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD", "length": 204 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P00757-1", "protein_name": "Kallikrein 1-related peptidase-like b4", "gene_name": "Klk1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP", "length": 256 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P01241-1", "protein_name": "Somatotropin", "gene_name": "GH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P02762-1", "protein_name": "Major urinary protein 6", "gene_name": "Mup6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04071-1", "protein_name": "Kallikrein 1-related peptidase b16", "gene_name": "Klk1b16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSRIVGGFKCEKNSQPWQVAVYYHKEHICGGVLLDRNWVLTAAHCYVDECEVWLGKNQLFQEEPSAQNRLVSKSFPHPGFNMTLLTFEKLPPGADFSNDLMLLRLSKPADITDVVKPIDLPTKEPKLDSTCLVSGWGSITPTKWQKPDDLQCMFTKLLPNENCAKAYLLKVTDVMLCTIEMGEDKGPCVGDSGGPLICDGVLQGTVSIGPDPCGIPGVSAIYTNLVKFNSWIKDTMMKNA", "length": 261 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04644-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "Rps17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV", "length": 135 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P05817-1", "protein_name": "Prestalk D11 protein", "gene_name": "ampA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKLILLLILSSCLVLSVKSEVNVDCSLVRCAQPICKPHYRLNMTDSCCGRCEPCTDVACTLQVKYCQDGEVPTGCCPCTLPPTKPDCSLVKCARPVCKPYYRLNMTDSCCGRCEPCTGVACTLQIKYCKDGEVPTGCCPCTPQPTKKPDCSKVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQPTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPFGCCPCRENLTQ", "length": 284 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P06325-1", "protein_name": "T-cell receptor gamma chain V region 5/10-13", "gene_name": "Tcrg-V1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLRWPTFCCLWVFGLGQLEQTELSVTRATDESAQISCIVSLPYFSNTAIHWYRQKAKKFEYLIYVSTNYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVCRSGTSWVKIFAKGTKLVVIPP", "length": 135 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSETAPAASSTLVPAPVEKPATKRRGKKPGMATARKPRGFSVSKLIPEALSMSQERAGMSLAALKKALAAAGYDVEKNNSRIKLALKRLVNKGVLVQTKGTGASGSFKLSKKAASGNDKGKGKKSASAKAKKLGLSRASRSPKSSKTKVVKKPKATPTKGSGSRRKTKGAKGLQQRKSPAKARATNSNSGKSKMVMQKTDLRKAAGRK", "length": 208 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07628-1", "protein_name": "Kallikrein 1-related peptidase b8", "gene_name": "Klk1b8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFLILFLALSLGGIDAAPPLQSRVVGGFNCEKNSQPWQVAVYDNKEHICGGVLLERNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLTLKEIPPGADFSNDLMLLRLSKPADITDAVKPITLPTKESKLGSTCLASGWGSITPTKWQKPDDLQCVFLKLLPIKNCIENHNVKVTDVMLCAGEMSGGKNICKGDSGGPLICDSVLQGITSTGPIPCGKPGVPAMYTNLIKFNSWIKDTMTKNS", "length": 261 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P07647-1", "protein_name": "Submandibular glandular kallikrein-9", "gene_name": "Klk9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFLILFLALSLGQIDAAPPGQSRVVGGYNCETNSQPWQVAVIGTTFCGGVLIDPSWVITAAHCYSKNYRVLLGRNNLVKDEPFAQRRLVSQSFQHPDYIPVFMRNHTRQRAYDHNNDLMLLHLSKPADITGGVKVIDLPTEEPKVGSICLASGWGMTNPSEMKLSHDLQCVNIHLLSNEKCIETYKNIETDVTLCAGEMDGGKDTCTGDSGGPLICDGVLQGLTSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKENP", "length": 259 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P08932-1", "protein_name": "T-kininogen 2", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLITILLLCSRLLPSLAQEEGAQEMDCNDETVFQAVDTALKKYNAELESGNQFLLYRVTEGTKKDGAETLYSFKYQIKEGNCSVQSGLTWQDCDFKDAEEAATGECTTTLGKKENKFSVATQICNITPGKGPKKTEEDLCVGCFQPIPMDSSDLKPVLKHAVEHFNNNTKHTHLFALTEVKSAHSQVVAGMNYKIIYSIVQTNCSKEDFPFLREDCVPLPYGDHGECRGHTYVDIHNTIAGFSQSCDLYPGDDLFSLLPKKCFGCPKNIPVDSPELKEALGHSIAQLNAQHNHLFYFKIDTVKKATSQVVAGTKYVIEFIARETNCSKQTNTELTADCETKHLGQSLNCNANVYMRPWENKVVPTVRCQALDMMISRPPGFSPFRLVQVQETKEGTTRLLNSCEYKGRLSKAGAGPAPDHQAEASTVTP", "length": 430 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C0S7-1", "protein_name": "Histone H2A.Z", "gene_name": "H2az1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV", "length": 128 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C2B7-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "MRPL52", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALGMLLSTGVRRLHCGSAARAGSQWRLRQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAQREKFARRVVLLSQEMDAGLQAWQLRQQEKLQEEKRKQQNALKPKGVLLQNPGPSQ", "length": 124 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C644-1", "protein_name": "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1", "gene_name": "Ppip5k1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWSLTANEDEDESATAHFFLGAGDEGLGTCGIGMRTGESDSELLEDEEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELRCVIAIIRHGDRTPKQKMKMEVTHPRFFALFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPGAEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASSEGQDLQREPPAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDSDSLSSCQHRVKARLHHILQQDAPFGPEDYDQLAPTGSTSLLNSMSVIQNPVKVCDQVFALIENLTHQIRERMQDPSSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKVEIAVGFCLPLLRKILLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEGSAPAGCGFRPASSENEEMKTDPGSIENLCPAKPSDEPDRALQTSPQPVEGTGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARTHGKKLPPAGLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQVSEFLTKVCQRHTDAHAQASAALFDSMHNHQASDNPFSPPRTLHSPPLQLRHRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSHFGFSDQSSVNTQMIEEKQGLGLLQETPGDGTPEFHIELAESTQSPQEPPVEISPPGSQDDTEVNQTCQEVPDTIQPCHDILEEIGQPNQEVPDISQLLLKNHDTATNTCQPCQASQLSKKVYEEICQLCQDNPEESNQLCQEVSVELGRMVHRFPVSIGSTTQETLMEIGRPTQEIPEEPCQEFSEKVGMLTQKASAISELSQDILETDNPSQELSEETDLQAQEVSEEIDQEPEVVDELSNEDIS", "length": 1434 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C7H9-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7", "gene_name": "USP17L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALHSPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGVSDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0CW02-1", "protein_name": "Lymphocyte antigen 6C1", "gene_name": "Ly6c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTSHTTKSCVLILLVALLCAERAQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVPIRDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVVLQTLL", "length": 131 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DKL4-1", "protein_name": "Spliceosome-associated protein 130 A", "gene_name": "SAP130A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DKL6-1", "protein_name": "Spliceosome-associated protein 130 B", "gene_name": "SAP130B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DML3-1", "protein_name": "Chorionic somatomammotropin hormone 2", "gene_name": "CSH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DMV2-1", "protein_name": "Cancer/testis antigen family 45 member A9", "gene_name": "CT45A9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETAFSPKSQQEINADIKRQLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DOV1-1", "protein_name": "Interferon-activable protein 211", "gene_name": "Ifi211", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLRGLECINKHYFSLFKSLLARDLNLERDNQEQYTTIQIANMMEEKFPADSGLGKLIEFCEEVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLASERGETSATQEETSTAQAGTSTAQAGTSTAQAGTSTAQKRKSMREEETGVKKSKAAKEPDQPPCCEEPTAMCQSPILHSSSSASSNILSAKNQKSQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMFHATVATVSQYFHVKVFNIDLKEKFTKNNFITISNYFESKGILEINETSSVLEAAPKQMIEVPNCITRNANASPKICDIQKGTSGTVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVVGSGQWHNINCKEGDKLHLFCFHLKRERGQPKLVCGDHSFVKVTKAGKKKEASTVQ", "length": 425 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DTA3-1", "protein_name": "Speedy protein E11", "gene_name": "SPDYE11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD3-1", "protein_name": "Speedy protein E14", "gene_name": "SPDYE14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD4-1", "protein_name": "Speedy protein E15", "gene_name": "SPDYE15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW11-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 6", "gene_name": "TAF11L6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW12-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 7", "gene_name": "TAF11L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW13-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 8", "gene_name": "TAF11L8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW14-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 10", "gene_name": "TAF11L10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11588-1", "protein_name": "Major urinary protein 1", "gene_name": "Mup1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEKHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P11589-1", "protein_name": "Major urinary protein 2", "gene_name": "Mup2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAKLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13255-1", "protein_name": "Glycine N-methyltransferase", "gene_name": "Gnmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG", "length": 293 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P13675-1", "protein_name": "Y-linked testis-specific protein 1", "gene_name": "Ssty1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVSCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYFVKYDGIDSIYVLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFERKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P15515-1", "protein_name": "Histatin-1", "gene_name": "HTN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN", "length": 57 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P16374-1", "protein_name": "Zinc finger protein 60", "gene_name": "Zfp60", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSSSQHMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRNIMLETYSNLVAVVGRCIPKPDLIVLLEPEKEPWMAVKKETGRPSQGLETGFEAENRSPKNHVYNKKLPKQTIQQLSKTSDVQGVSVSNGPGYSVIKEPQNYQEGDANRNITNKKEMSTYTSKTLAHNKEKPYKCKDCGKCFGCKSNLHQHESIHTGEKPYECKDCGKTFRLPQMLSRHQKSHSDERPFECNICGKSFHLPTLLQYHKNIHTGLKPFECEECGKSFKSFNRISTLFQHRTIHAGMKPYKCNVCGKAFNRRSNLLQHQKIHSEDRPFHCKVCGKAFTVLAQLTRHENIHTEDKSFECKQCGKIFSNGSYLLRHYDTHTNEKPFECNICGKAFRLHLYLSEHQKTHTDEKPFKCKLCESAFRRKYQLSEHQRIHTDGKPYQCKDCWEFFRRRSNFIEHQSIHTGKKPFECKDCGKVFRLNIHLIRHQRFHSDEKPFECKECGKAFHFSSQLNNHKTSHTGQTPFECKECGKSFKRVSSLVEHRIIHSGVKPYKCNACGRAFNRRSNLMQHEKIHSDERPFECKDCGKAFTVLAQLTRHQTIHNGKKSYECEQCGSAFRLPYQLTQHQRIHYDVKPFQCKECGRAFVRSTGLRIHERIHTGEKPFQCKECGEAFQYHYQFLGHFRIHTGKNPYECSECGKYFTYGRDLKVHQSIHNLEKP", "length": 707 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P20816-1", "protein_name": "Cytochrome P450 4A2", "gene_name": "Cyp4a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFSVFSPTRSLDGVSGFFQGAFLLSLFLVLFKAVQFYLRRQWLLKALEKFPSTPSHWLWGHNLKDREFQQVLTWVEKFPGACLQWLSGSTARVLLYDPDYVKVVLGRSDPKPYQSLAPWIGYGLLLLNGKKWFQHRRMLTPAFHYDILKPYVKIMADSVSIMLDKWEKLDDQDHPLEIFHYVSLMTLDTVMKCAFSHQGSVQLDVNSRSYTKAVEDLNNLIFFRVRSAFYGNSIIYNMSSDGRLSRRACQIAHEHTDGVIKTRKAQLQNEEELQKARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHAYLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR", "length": 504 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21571-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "Atp5pf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQRIFRLSSVLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGPVDTGPEYQQEVDRELFKLKQMYGKGEMDKFPTFNFEDPKFEVLDKPQS", "length": 108 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P22237-1", "protein_name": "NADH-ubiquinone oxidoreductase subunit 9", "gene_name": "nad9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKDYKNELKVKINLGEHLRLSIPGLVKKIMYKTHYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVDCLNIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMFGIYFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVNDKKIIYKPIELMQEYRNYNFGAVWGDYERKVYLENIIK", "length": 209 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P22283-1", "protein_name": "Cystatin-related protein 2", "gene_name": "Crp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYKTLCGTQLLLAIFVLFLNFSHATAKGTRGPMEIFKKNFMEKNKLNDVYDIFKFLYNKFSHDTYLSNIKNQSFTMNTWGFGEIEVVKTKCRKIDSDFYKCSFQWEFCNIKRTPGVTIYYITLPGSVRCRKLLSKLVNCPFEEQTEQLKREICYFQLYPDYIEQNIRSVRFNCYTK", "length": 176 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23266-1", "protein_name": "Olfactory receptor 1f45", "gene_name": "Or1f45", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAVFGNMDNFLLAVMSYDRFVAICHPLHYTTKMTRQLCVLLVVGSWVVANMNCLLHILLMARLSFCADNMIPHFFCDGTPLLKLSCSDTHLNELMILTEGAVVMVTPFVCILISYIHITCAVLRVSSPRGGWKSFSTCGSHLAVVCLFYGTVIAVYFNPSSSHLAGRDMAAAVMYAVVTPMLNPFIYSLRNSDMKAALRKVLAMRFPSKQ", "length": 313 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24049-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "Rpl17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE", "length": 184 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24868-1", "protein_name": "G2/mitotic-specific cyclin-1", "gene_name": "CLB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSRSLLVENSRTINSNEEKGVNESQYILQKRNVPRTILGNVTNNANILQEISMNRKIGMKNFSKLNNFFPLKDDVSRADDFTSSFNDSRQGVKQEVLNNKENIPEYGYSEQEKQQCSNDDSFHTNSTALSCNRLIYSENKSISTQMEWQKKIMREDSKKKRPISTLVEQDDQKKFKLHELTTEEEVLEEYEWDDLDEEDCDDPLMVSEEVNDIFDYLHHLEIITLPNKANLYKHKNIKQNRDILVNWIIKIHNKFGLLPETLYLAINIMDRFLCEEVVQLNRLQLVGTSCLFIASKYEEIYSPSIKHFAYETDGACSVEDIKEGERFILEKLDFQISFANPMNFLRRISKADDYDIQSRTLAKFLMEISIVDFKFIGILPSLCASAAMFLSRKMLGKGTWDGNLIHYSGGYTKAKLYPVCQLLMDYLVGSTIHDEFLKKYQSRRFLKASIISIEWALKVRKNGYDIMTLHE", "length": 471 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25389-1", "protein_name": "Probable serine/threonine-protein kinase KCC4", "gene_name": "KCC4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTVANTETHSAAKPSSTIGPWKLGETLGFGSTGKVQLAQHERTGHRTAVKVISKSIFNNNGNHSNDDSVLPYNIEREIVIMKLLSHPNVLSLYDVWETNNNLYLILEYAEKGELFNLLVDHGPLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLLDSFYNIKIADFGMAALQTDADLLETSCGSPHYAAPEIVSGLPYEGFASDVWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDTEISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHTSASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKILYALLYRFKLDSVRGSNKKNRNKIKKTKKNKRSSTLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLLSSNPTDSSPIPLRSSKRITHINVASANTQATPSGVPNPHKRNSKKRSSKRLSYMPNTKRSSLTSKSLSNFTNLIDDDDWEYIEKDAKRTSSNFATLIDEIFEPEKFELAKREKAELQRKVQEAKRQSVNAQKINEDEFGSEVSDGMKELKKINDKVSSPLINYEFSQQELLQDIDTLLTNRYQLSSYTRPISRLDPGLTPVTETLPNNLKEKTALLQDTEKKIIETIRRSKFLGSLLNVRGGLSPGKSELAPIEESPIVSTTPLIYNDRMEPRRISDVEVPHFTRKSKHFTTANNRRSVLSLYAKDSIKDLNEFLIKEDPDLPPQGSTDNESRSEDPEIAESITDSRNIQYDEDDSKDGDNVNNDNILSDFPQGVGISQEYDMKDKNPNQSPISKSAEPTLVVKLPSLSSFQGKNASGLGLYQREPSKVTLPSLTSNNSSVGENIEDGAEKGTESEKIAASLSDDDLKEDNDKKDNDTVNAPTTVKKPPNSVLLKKFSKGKILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVLDK", "length": 1037 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28312-1", "protein_name": "Alpha-defensin 5", "gene_name": "Defa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHEELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P28742-1", "protein_name": "Kinesin-like protein KIP1", "gene_name": "KIP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARSSLPNRRTAQFEANKRRTIAHAPSPSLSNGMHTLTPPTCNNGAATSDSNIHVYVRCRSRNKREIEEKSSVVISTLGPQGKEIILSNGSHQSYSSSKKTYQFDQVFGAESDQETVFNATAKNYIKEMLHGYNCTIFAYGQTGTGKTYTMSGDINILGDVQSTDNLLLGEHAGIIPRVLVDLFKELSSLNKEYSVKISFLELYNENLKDLLSDSEDDDPAVNDPKRQIRIFDNNNNNSSIMVKGMQEIFINSAHEGLNLLMQGSLKRKVAATKCNDLSSRSHTVFTITTNIVEQDSKDHGQNKNFVKIGKLNLVDLAGSENINRSGAENKRAQEAGLINKSLLTLGRVINALVDHSNHIPYRESKLTRLLQDSLGGMTKTCIIATISPAKISMEETASTLEYATRAKSIKNTPQVNQSLSKDTCLKDYIQEIEKLRNDLKNSRNKQGIFITQDQLDLYESNSILIDEQNLKIHNLREQIKKFKENYLNQLDINNLLQSEKEKLIAIIQNFNVDFSNFYSEIQKIHHTNLELMNEVIQQRDFSLENSQKQYNTNQNMQLKISQQVLQTLNTLQGSLNNYNSKCSEVIKGVTEELTRNVNTHKAKHDSTLKSLLNITTNLLMNQMNELVRSISTSLEIFQSDSTSHYRKDLNEIYQSHQQFLKNLQNDIKSCLDSIGSSILTSINEISQNCTTNLNSMNVLIENQQSGSSKLIKEQDLEIKKLKNDLINERRISNQFNQQLAEMKRYFQDHVSRTRSEFHDELNKCIDNLKDKQSKLDQDIWQKTASIFNETDIVVNKIHSDSIASLAHNAENTLKTVSQNNESFTNDLISLSRGMNMDISSKLRSLPINEFLNKISQTICETCGDDNTIASNPVLTSIKKFQNIICSDIALTNEKIMSLIDEIQSQIETISNENNINLIAINENFNSLCNFILTDYDENIMQISKTQDEVLSEHCEKLQSLKILGMDIFTAHSIEKPLHEHTRPEASVIKALPLLDYPKQFQIYRDAENKSKDDTSNSRTCIPNLSTNENFPLSQFSPKTPVPVPDQPLPKVLIPKSINSAKSNRSKTLPNTEGTGRESQNNLKRRFTTEPILKGEETENNDILQNKKLHQ", "length": 1111 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29314-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED", "length": 194 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P33579-1", "protein_name": "Prolactin-8A5", "gene_name": "Prl8a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELALSQPSFFGTLLMLVVSNLLLWEKAASIPACMVEDGGCWDPLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQFADLSSQLIRKDETVLKAGTYCHSNRAKPKSRGVNIDIEEYLKMSINFCGFMDQPLFHLVIELSAMEGVPETILSKAKDLEENNRQLLDDLRWILTKVFPTAEIKEEFPSWDYLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQILNCLITGKDC", "length": 238 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAVIKKGARRKDVKEPKKRSAKIKKATFDANKKKEVGISDLTLLSKISDESINENLKKRFKNGIIYTYIGHVLISVNPFRDLGIYTNAVLESYKGKNRLEVPPHVFAIAESMYYNLKSYNENQCVIISGESGAGKTEAAKRIMQYIAAASNSHSESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKFNSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQFTKGASDTYKQMFGVQMPEQYIYTAAAGCTTADTIDDVKDYEGTLEAMRTIGLVQEEQDQIFRMLAAILWIGNISFIENEEGNAQVGDTSVTDFVAYLLQVDASLLVKCLVERIMQTSHGMKRGSVYHVPLNPVQATAVRDALAKAIYNNLFDWIVDRVNVSLQAFPGADKSIGILDIYGFEIFEHNSFEQICINYVNEKLQQIFIQLTLKAEQETYEREKIKWTPIKYFDNKVVCDLIEAKNPPGILAAMNDSIATAHADSNAADQAFAQRLNLFNSNPYFELRANKFVIKHYAGDVTYDINGITDKNKDQLQKDLIELIGTTTNTFLSTIFPDDVDKDSKRRPPTAGDKIIKSANELVETLSKAEPSYIRTIKPNQTKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQTFEKFVERFYLLSPDCSYAGDYTWDGDTLEAVKLILRDAMIPEKEFQLGVTSVFIKTPESLFALEDMRDKYWYNMAARIQRAWRRFLQRRIDAAIKIQRTIREKKGGNKYVKLRDYGTKLLAGKKERRSMSLLGYRAFMGDYLSCNESKTKGSYIRRQVGIKDKVVFSIKGECLHSKFGRSAQRLKKVFILTKKTFYIIGQTREQNAMKYTQDYKIDVGKIKQVSLTNLQDDWMGVILVNSTQSDPLINTPFKTELMTRLKKLNEKIMIKVGPTIEYHKQPNKLHTVRSKISDSAPKYGDIYKSSTIYVRRGHPANSKSNKKPKNPGGLSGKPIKSKKSKHKSTHKHTHSHRSHRDAAKKQPLPSQKPVNPLSLAATAAQAAYNPKPDKTVPIKSSAIPAAKVSSKHSSKPSSKEKVAVKKASSSHKSSSAKQNQVSMPPSKGVEKNKEPLKETTATATANIPIPPPPPPMGQPKDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVPVAATGAVNDVTNQKSSQIDNTISSAQEGVQFGSATVGPTSDNQSNPVGTFSDGLASALAARANKMRAESADDDDNDDGDDDDDW", "length": 1272 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36046-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "MIA40", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLRNLVVRNACRNRPSIQVARGLCRHQTRRLMASSPQFGRNSNQEKTAGFIMGILSMAGALYFIAPNRKPLFASRKVESDKTAEEELSSGGEQSPENEDDNNSKSDENGDDNDSKNDETEAGPQLGGDKIGASKVAEDGELVVLAEEDNKSSEDKDTDESKVSTKDDEQSNEDNATANNQKDENISSENSEENTSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTEDNNGEEESSKKTVSDSENSAKQSESSDEEKEELRKQEEKQMGPTEEEVQHEGAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDDEEPQDKVKVNTIESAPNVSSAKENAAKKAEQSDVKKEPLNEESKP", "length": 403 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37106-1", "protein_name": "Signal recognition particle subunit SRP54 1", "gene_name": "SRP-54A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRIPLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGIKIPKNGDMSKVIPPQMLKQMGGMSGLQSLMKQMGSAKDMMGMFGGGGK", "length": 479 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38150-1", "protein_name": "Inactive deaminase YBR284W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVQNNESVFFVECDSYKESPSTSPIRLDDLDGNDAVSDQGLAFDGDVGITSQARVRNPRAQIFEDSNTDVVLHLDDLDMVPLNTKFDMQMEMGSPMAMPAETPPPVEPLKTKDLAYSSLAHLPSYFFEQTHFRIDRKCLLEMSKLRRNYLTISKQDALSCPQLHSRVAGGYLKPVKEKLFGIRHFLDLEESNTVNLLQDGNYMTELFNSQINIPTFKEFREDFEWCLKIIRDRSLSRFSEKRLQYLVNKFPVFQHLHSKEEMRQSKKVPHKDFYNCRKIDLNLLLSGCFSQWQLTEFIWTKLRKEPDRVIHQAFNGSHITLSQLFKVNFEETGQFFNGLKIIDDSFLEWYKVIYLAKYHLVNDEMEIHTGSHGKQLRYYLIAKTFLEFDNYINGEYLAELLKTFLIKPQEESKYQLCQLSVDFQFYLHYDNSDVDNWWMVFANWLNHYNIFSNNIRWNIRISRIYPELYHTGKVKNFQEYLNLIFKPLFNAENYLHKSLGPILLKFLSQVSSIDLCIQDTDNYIWKNFTAVSCLPKDWTSGGDNPTISQYMYYVYVNLTKLNHIRQALHQNTFTLRSSCSPTSMNRTSQFSNTLNFTEHTEAILNNFLLACGGFLNAENLWNAPPSLVYLFYLSQIPMVVAPLNSIVDSKPTMLQEQAPTGLVLEPSKPYKKNPFMKFFEMGFKISLSSESILYNNSYTKEPIIEEYSVAASIYRLHSADLCELLRNSVITSGFSSTLKNKWLGVSLASHDYFVENTGFVDKWYDCKPNTSLEHNVPIIRRQYRSSTLAGEWRLIIA", "length": 797 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40002-1", "protein_name": "Transcriptional regulator MIT1", "gene_name": "MIT1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDIEPTFKGYIEDEDDALLILQATLDGKLKHIPRRPYEIERPYLIVSGSIFVFIEEISGIKRWTDGVSWSPSRISGKFLIYKELDKENAGSNANATSSGSTDSAVITDGTSGARNNPSSSKIKLPPLKNHQFDLPPTMGHSSFESEQDTSISPSNRSNLPLKYTGLVKKTISVKLKRPPFNSIENLHIVSYYSVKDIKQNCLVTPKASPFLKDVRPSQELIVAMGNTTLGNVKNNSTTTGNGPNNINNKSNSSTPLNTVISTNNNSANINAAGSNQFTSANKNYYYKNDESSGYPITQFAPALPSTTLMYTANPPYITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNTNAGNGNNPNRFHNASFAYNTTGDFINPQQQGQISYPFYYTTIPINNPNYYTTQPPNPVTNASTNENQGYSTSSTQHPYYGHPTESQSASAAAGATGTPGTAENVLPVSSMQPLLHQANNNSASSATSTAPYPVYSMNVNVPYYNSSASAYKRAQENTTSNTNAEPSGATSTNSGTMLSNPAYANSQYTPSQVYYQGFPQYAMASAQNPSMYQHQHQHPLPTVYPIATPQQNIMSSGHTLSTIGSDPQHHHYQQEPNDHKNFAMGHANNNILNITNNDTMNNLNTNTSTTTQ", "length": 666 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42222-1", "protein_name": "Enolase-related protein 3", "gene_name": "ERR3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSITKVHARTVYDSRGNPTVEVEITTENGLFRAIVPSGASTGIHEAVELRDGNKSEWMGKGVTKAVSNVNSIIGPALIKSDLCVTNQKGIDELMISLDGTSNKSRLGANAILGVSLCVARAAAAQKGITLYKYIAELADARQDPFVIPVPFFNVLNGGAHAGGSLAMQEFKIAPVGAQSFAEAMRMGSEVYHHLKILAKEQYGPSAGNVGDEGGVAPDIDTAEDALDMIVKAINICGYEGRVKVGIDSAPSVFYKDGKYDLNFKEPNSDPSHWLSPAQLAEYYHSLLKKYPIISLEDPYAEDDWSSWSAFLKTVNVQIIADDLTCTNKTRIARAIEEKCANTLLLKLNQIGTLTESIEAANQAFDAGWGVMISHRSGETEDPFIADLVVGLRCGQIKSGALSRSERLAKYNELLRIEEELGDDCIYAGHRFHDGNKL", "length": 437 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43356-1", "protein_name": "Melanoma-associated antigen 2", "gene_name": "MAGEA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQQTASSSSTLVEVTLGEVPAADSPSPPHSPQGASSFSTTINYTLWRQSDEGSSNQEEEGPRMFPDLESEFQAAISRKMVELVHFLLLKYRAREPVTKAEMLESVLRNCQDFFPVIFSKASEYLQLVFGIEVVEVVPISHLYILVTCLGLSYDGLLGDNQVMPKTGLLIIVLAIIAIEGDCAPEEKIWEELSMLEVFEGREDSVFAHPRKLLMQDLVQENYLEYRQVPGSDPACYEFLWGPRALIETSYVKVLHHTLKIGGEPHISYPPLHERALREGEE", "length": 314 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQEAASSSSTLVEVTLGEVPAAESPDPPQSPQGASSLPTTMNYPLWSQSYEDSSNQEEEGPSTFPDLESEFQAALSRKVAELVHFLLLKYRAREPVTKAEMLGSVVGNWQYFFPVIFSKASSSLQLVFGIELMEVDPIGHLYIFATCLGLSYDGLLGDNQIMPKAGLLIIVLAIIAREGDCAPEEKIWEELSVLEVFEGREDSILGDPKKLLTQHFVQENYLEYRQVPGSDPACYEFLWGPRALVETSYVKVLHHMVKISGGPHISYPPLHEWVLREGEE", "length": 314 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43537-1", "protein_name": "Uncharacterized membrane protein YFL067W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MESIILSIAIFIGVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAGSGSSISAGVGSRIGTGIGSRIGTGIGTGIGSRISTSIGSRISPDVGTSSGNRISTGVSTGISTTMNARVAVLITAAILSAPVTAIALLEARR", "length": 175 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46162-1", "protein_name": "Beta-defensin 4", "gene_name": "DEFB4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLAVLFLVLSAGSGFTQRVRNPQSCRWNMGVCIPFLCRVGMRQIGTCFGPRVPCCRR", "length": 63 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P46169-1", "protein_name": "Beta-defensin 11", "gene_name": "DEFB11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLALLFLVLSAGSGISGPLSCRRNGGVCIPIRCPGPMRQIGTCFGRPVKCCRSW", "length": 60 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47102-1", "protein_name": "ARF guanine-nucleotide exchange factor 1", "gene_name": "GEA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MHDVPMETVLAVNPATMIVKECINLCSAMNKQSRDKSQTSVAALLGGGSDIFLSQSDSFVDSFHNLPTSSYHDPLISGLVQLRLKINDLKGLDSLNALELLKPFLEIVSASSVSGYTTSLALDSLQKVFTLKIINKTFNDIQIAVRETVVALTHCRFEASKQISDDSVLLKVVTLLRDIITSSFGDYLSDTIIYDVLQTTLSLACNTQRSEVLRKTAEVTIAGITVKLFTKLKLLDPPTKTEKYINDESYTDNNLKDDIIGTTTSDNDLSSTDDDSAVADDNKNEKPVQQVIREQENDEETAEKAENVEPNYGITVIKDYLGLLLSLVMPENRMKHTTSAMKLSLQLINAAIEISGDKFPLYPRLFSLISDPIFKSVLFIIQSSTQYSLLQATLQLFTSLVVILGDYLPMQIELTLRRIFEILEDTTISGDVSKQKPPAIRELIIEQLSILWIHSPAFFLQLFVNFDCNLDRSDLSIDFIKELTKFSLPAAAVNTSNNIPPICLEGVLSLIENIYNDLQRFDRAEFVKNQKEIDILKQRDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVMPEEHHGNERWFEDAWNNLISSTSVMTEMQRDFTNPISKLAQIDILQYEKAIFSNVRDIILKTLFKIFTVASSDQISLRILDAISKCTFINYYFSFDQSYNDTVLHLGEMTTLAQSSAKAVELDVDSIPLVEIFVEDTGSKISVSNQSIRLGQNFKAQLCTVLYFQIIKEISDPSIVSTRLWNQIVQLILKLFENLLMEPNLPFFTNFHSLLKLPELPLPDPDISIRKAKMSRSLLSTFASYLKGDEEPSEEDIDFSIKAFECVKASHPLSSVFENNQLVSPKMIETLLSSLVIEKTSENSPYFEQELLFLLEISIILISEASYGQEFGALIADHMINISNLDGLSKEAIARLASYKMFLVSRFDNPRDILSDLIEHDFLVKNEIFNTKYYESEWGKQVINDLFTHLNDVKYNERALKNVKFWNFLRILISAKDRQFAVYTFLEKYIQNGDIFVDDGNFMNILSLLDEMSCAGAVGTKWEQNYENSVEDGCEAPESNPYRSIIDLSSRSINITADLLSTVGRSNSALNKNEIIAAIQGLAHQCLNPCDELGMQALQALENILLSRASQLRTEKVAVDNLLETGLLPIFELDEIQDVKMKRITSILSVLSKIFLGQLVEGVTSNETFLRVLNVFNKYVDDPTVERQLQELIISKREIEKE", "length": 1408 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53563-1", "protein_name": "Bcl-2-like protein 1", "gene_name": "Bcl2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEPERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK", "length": 233 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P56840-1", "protein_name": "Protein TCL1B1", "gene_name": "Tcl1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAFDPLGPLPVYLVSVRLGIYEDEHHRVWIVANVETSHSSHGNRRRTHVTVHLWKLIPQQVIPFNPLNYDFLPTTWKLESRNIYWATDGTHWRLLDHSQLGDTEQLILMLVLG", "length": 116 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56841-1", "protein_name": "Protein TCL1B2", "gene_name": "Tcl1b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGFYPPRLLPQVLISTGPGFYEDEHHRLWMVAKLETCSHSPYCNKIETCVTVHLWQMTRYPQEPAPYNPMNYNFLPMTWRLASMNTYRGTDAMHWRLLNHSQVGDTVQLILMLE", "length": 117 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56842-1", "protein_name": "Protein TCL1B3", "gene_name": "Tcl1b3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVHFPWMPFPPRFLVCTRDDIYEDENGRQWVVAKVETSRSPYGSRIETCITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGTDGTYWRLLDHSQMGDTLQLILDIVICEVD", "length": 122 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56844-1", "protein_name": "Protein TCL1B4", "gene_name": "Tcl1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVRFPCMPFPPCFLVCTRDDIYEDEHGRQWVAAKVETSSHSPYCSKIETCVTVHLWQMTTLFQEPSPDSLKTFNFLPRTWRLESRNTYRGADAMHWRLVNHSQFYGTEELVLMLDSR", "length": 120 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59528-1", "protein_name": "Taste receptor type 2 member 123", "gene_name": "Tas2r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSQKINYSHLFTFSITLYVEIVTGILGHGFIALVNIMDWVKRRRISSVDQILTALALTRFIYVLSMLICILLFMLCPHLPRRSEMLSAMGIFWVVNSHFSIWLTTCLGVFYFLKIANFSNSFFLYLKWRVKKVILIIILASLIFLTLHILSLGIYDQFSIAAYVGNMSYSLTDLTQFSSTFLFSNSSNVFLITNSSHVFLPINSLFMLIPFTVSLVAFLMLIFSLWKHHKKMQVNAKQPRDVSTMAHIKALQTVFSFLLLYAIYLLFLIIGILNLGLMEKIVILIFDHISGAVFPISHSFVLILGNSKLRQASLSVLPCLRCQSKDMDTMGL", "length": 333 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61314-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "Rpl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR", "length": 204 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62246-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "Rps15a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62425-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "Rpl7a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62802-1", "protein_name": "Histone H4", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P62963-1", "protein_name": "Profilin-1", "gene_name": "Pfn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGWNAYIDSLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVSITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNVTVTMTAKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY", "length": 140 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62982-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "Rps27a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNKPEDK", "length": 156 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70709-1", "protein_name": "Eosinophil cationic protein", "gene_name": "Rnase3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLKLLESRLCLLLSLGLVLMLASCQPPTPSQWFEIQHIYNRAYPRCNDAMRHRNRFTGHCKDINTFLHTSFASVVGVCGNRNIPCGNRTYRNCHNSRYRVSITFCNLTTPARIYTQCRYQTTRSRKFYTVGCDPRTPRDSPMYPVVPVHLDRIF", "length": 155 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81278-1", "protein_name": "Prolactin-releasing peptide", "gene_name": "Prlh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALKTWLLCLLLLSLVLPGASSRAHQHSMETRTPDINPAWYTGRGIRPVGRFGRRRATPRDVTGLGQLSCLPLDGRTKFSQRG", "length": 83 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83883-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "Rpl36a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83884-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P97876-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like 3", "gene_name": "Batf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQGPPAGGVLQSSVAAPGNQPQSPKDDDRKVRRREKNRVAAQRSRKKQTQKSDKLHEEHESLEQENSVLRREIAKLKEELRHLTEALKEHEKMCPLLLCPMNFVQLRPDPVASWSAHDAPDHPSFIWLGTLV", "length": 133 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEVSAKGTTISKKGFKKAVTKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 127 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01534-1", "protein_name": "Testis-specific Y-encoded protein 1", "gene_name": "TSPY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS", "length": 308 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q03764-1", "protein_name": "Ethanolamine kinase", "gene_name": "EKI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MYTNYSLTSSDAMPRTYLVGTASPEMSKKKRQSANCDKPTRRVIHIIDTNEHSEVDLKNELPITCTNEDGEMTSSSWTSQTANDFLKLAYVNAKLDPSLPSQYFKQDIINVLQSLEIPGWSVPGSKESSLNKNLLTLTQIKGALTNVIYKIHYPNLPPLLMRIFGDSIDSVIDREYELKVIARLSFYDLGPKLEGFFENGRFEKYIEGSRTSTQADFIDRDTSIKIAKKLKELHCTVPLTHKEITDQPSCWTTFDQWIKLIDSHKEWVSNNVNISENLRCSSWNFFLKSFKNYKRWLYNDSAFTSKLLREDDKDSMINSGLKMVFCHNDLQHGNLLFKSKGKDDISVGDLTIIDFEYAGPNPVVFDLSNHLNEWMQDYNDVQSFKSHIDKYPKEEDILVFAQSYINHMNENHVKIASQEVRILYNLIIEWRPCTQLFWCLWALLQSGRLPQRPLIEGEKLMSEKAGLGDETHLMEHKNKENGKYDCSEDDSFNYLGFCKEKMSVFWGDLITLGVIDKDCPDIGKTDYLDTKLIF", "length": 534 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04902-1", "protein_name": "Probable glutathione-independent glyoxalase SNO4", "gene_name": "SNO4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKIFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNRAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYS", "length": 237 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0D2J5-1", "protein_name": "Zinc finger protein 763", "gene_name": "ZNF763", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPVACEDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSIGKKWKDQNIEYEYQNPRRNFRSLIEGNVNEIKEDSHCGETFTQVPDDRLNFQEKKASPEAKSCDNFVCGEVGIGNSSFNMNIRGDIGHKAYEYQDYAPKPYKCQQPKKAFRYHPSFRTQERNHTGEKPYACKECGKTFISHSGIRRRMVMHSGDGPYKCKFCGKAVHCLRLYLIHERTHTGEKPYECKQCVKSFSYSATHRIHERTHTGEKPYECQQCGKAFHSSSSFQAHKRTHTGGKPYECKQCGKSFSWCHSFQIHERTHTGEKPCECSKCNKAFRSYRSYLRHKRSHTGEKPYQCKECRKAFTYPSSLRRHERTHSAKKPYECKQCGKALSYKFSNTPKNALWRKTL", "length": 394 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0WX57-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 24", "gene_name": "USP17L30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LYG5-1", "protein_name": "Elongation factor 2a.1", "gene_name": "eef2a.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MENFNVDQIRATMDKKSNIRNMSVIGAFDHGKSTLTDWLVSEAGIVSSARAGETRFMDTRRDEQERCITIKSTAISIFYELAEKDLAFIKECKDGSGFLLNLIDSPGHVDFSSEVTAALRITDGALLVVDCVSGVCLQTETVLRQAIGERIKPVLMINKMDRALLELQLVPEELYQIFQRIVEKVNVTISTYAEDEKGPMGNVMIDPVIGNLAFGSGLHGWAFTLKQFAELYVKKFAGKAQLGPEEYIKKVEDMIKRLWGDSYFDSTTGKFSESATSPDGKKLPRTFVHLVLDPIFKVFDAIMNFKKEETVKLIEKMGIKLDVEDKEKEGKILLKAVMRCWLPAGEALLQMITIHLPSPVTAQIYRCELLYEGPGDDEAAMGIKNCDPKAPLMMYISKMIPTSDKGCFYAFGRVFSGCVSTGLNVRIMGPNFTPGKKDDLYLKPIQRTVLMMGRYVEPIEDVPCGNIVGLLGVDQFLVKTGTITTFTKAYNMRVMKFSVSPVVRVSVEVMDPADLPKLVEGLKHLAKSDPMLQCIIEDTGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPFASYRETVSDGSKQLCLAKTPNKHSRLFMKACPLADGLAEDIDKGRVTASQEMNARAQYLAENYKWEVTEARKIWCFGPEGTGPNILVDLTKRVQYLNEIKDSVIAGFQWATREGVLCAENMRGIRFDIHDATLTSTAIHRGPGQIIVATRRVLYGCQLTAEPRLSEPIYLVEMQCPESVIGNVYGELVRRRGVVFSESQVMGTPVYLLKAYLPVSESFGFTADLCANTSGQAFSQCVFDHWQILPGDPMDPTSKVAHIMADIRKSKGLDEAIPALHCYLD", "length": 854 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1PEY5-1", "protein_name": "Probable 3-hydroxyisobutyryl-CoA hydrolase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERVEDEEGWEDLKFPPRNNLPALAIAAKL", "length": 378 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1ZXA5-1", "protein_name": "ADP-ribosylation factor-like protein DDB_G0292332", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDFIISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETILMSQNNNDDLIKCINWIFSN", "length": 186 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q1ZXJ4-1", "protein_name": "Acetyl-coenzyme A transporter 1", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHKHATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFIETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYASTCQTIGLNTGYFLSYTIFLTLSSPKFANKFLRSVPSEEGIITLPGYLQFWGILFIILSIYLAFFKDEESTTITTTTTRHDNYNNNNNDDKNKQVKSKIENESIESKSMRSSPSSLSPSLLSSPVKKQNKKNKQHISIDKKDITIIKENNENNEIIDNNNSNNNYDNGKKSIVQETYGMDISESDLTPKQVYYLLWKIITLPHIKILSILFIISKIVFQPNESALNLKLLEKGLRKEDIASFSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEISWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLFILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNISKELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL", "length": 618 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q23888-1", "protein_name": "Large ribosomal subunit protein uL2m", "gene_name": "mrpl2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVLNWRGVKSRLYSGKRRIDGRNKGLIAIRSRGGALKRKYRYIEHYKQKWMDKWLFVMRIEYDPNRSAHIALCSILKEGIYFYVISIAKLEVGSLIITSALKLGTLQVGNTTKIKNIPEGLLINNIELIENSGSKISRAAGTSSLIIKKYNKKYSLVKLSSKECRLISNECYATIGTVSNIERKLKQNKKASYSRKRGIRPIVRGLAMNPVDHPHGGRTKGGVHWKSFSGKLAYNVSSRKKTKMTSRYIIIGHRKQKIMDKQIKNG", "length": 266 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q24113-1", "protein_name": "Protein no-on-transient A", "gene_name": "nonA-l", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEGAVKKNSLNSSPLPQRQQRGNSTNKNLGKPTPPKLNAASDGNPAEKKARLGGNTQNGGGVAGGGGTGGGGGGGGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQKQINESPKPAAGNVPAKNNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGPNFRGRGGGPNQPNQNANQEQSNGYPGNQGDNKGGQGQRGAGGGKHQRGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAPNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRYQNQLLRHEEDMRARQQENDLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGNNSNNSTMAGPGGPDNSDGNQHGHIDSWGHRRF", "length": 630 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2PRK7-1", "protein_name": "Odorant receptor 106-10", "gene_name": "or80a10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANETFVKNVDSFIITGFDHLQNQKLLGSLILISYMFILLGNGINLCIISTDRHLHKPMYILICNLAVVDIMYSSTCSTTMISVLLAEIKTVSYYSCISRTYFFNLGDLTECMALTLMAIDRLIAINLPLRYHSFVTNSRILWLIFLTWIFSFAVIGFLTYVADTLPYCQPIIKYVFCSYSSLVRAACVDPEPYFAISTVYSMVTLCGLFPFILCTYAVLAYSVTKLANSSRKQMINTCLSHIIVLFSFYLPKIVYILLTRIGLVLTLTERNAVLIVSCFVSLLVNPTVYCIRTKGIRKRITDIFLYTQKITK", "length": 313 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ5-1", "protein_name": "Uncharacterized protein CXorf66 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIVIGTLITGYMVSCTCLLHYSCDSEEAHTAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKPVSQVSPSYPEKAIKSTWPPSLQCRAKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSRNN", "length": 361 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3L180-1", "protein_name": "Alpha-defensin 26", "gene_name": "Defa26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALFLLAFQVQADPIQNTDEETNTEVQPQEEDQAVSVSFGNPEGSDLQEESLRDLGCYCRKRGCTRRERINGTCRKGHLMYTLCCL", "length": 93 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TR54-1", "protein_name": "Gasdermin-C4", "gene_name": "Gsdmc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDKLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKKMTFPDRPLKLYDLPVTLRYQEEVIETGSWIDDIDPIGTIEEPANLNFMCLQHEVSEQTQLLAELSKDVQEVVFSSFLHMLSDRDVLYDLMKMLELNQLGHMDGPGGKILDELRKDSSTPHDVLKDLNLYLLQALLVLSDTQLCLLAQSVKMGLLPHQVELVKSILQTNFKYSSNTPFTLQPQLLAPLQGEGLAITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLQKANSSSKPSLSPGYI", "length": 480 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U0I6-1", "protein_name": "Endoregulin", "gene_name": "Erln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQMVPPRSIQNEDFWKNPWDVGGLTVIGLFTSTFLLFVLFAVVFGYVEKAVFEEE", "length": 56 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URS2-1", "protein_name": "Zinc finger and SCAN domain containing protein 4F", "gene_name": "Zscan4f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIMQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3ZCQ0-1", "protein_name": "Required for drug-induced death protein 1", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVGARLRSKASSLVGRGPLGRLRRAGDEETDAIVEHLEGEDEDPESQDCEREEDGRRAGTPSARRVHLAALPERYDSLEEPAPGDKPKKRYRRKLKKYGKNVGKAISKGCRYIVIGLQGFAAAYSAPFGVATSVVSFVR", "length": 140 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI3-1", "protein_name": "Defensin alpha 3", "gene_name": "Defa3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTLTLLTTLLLLALHTQAESPQGCTEDQKLLIMEDQDISISFTGDKGTALQDADVKSGVICNCRPRGCSFKERVYGECGYNGHILRLCCQPLNTMNKKSPSVI", "length": 104 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI6-1", "protein_name": "Defensin alpha 8", "gene_name": "Defa8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKTLVLLSALVLLAFQVQADHIQEAEEETKTEEQPADEDQDMSVSFEGPEASALQNLEIGWPLKQCHCRKFCRPYEKAEGSCRPGLFIKRKICCIQQWTPGRT", "length": 103 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4KL71-1", "protein_name": "Small proline-rich protein 2A3", "gene_name": "Sprr2a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q504N7-1", "protein_name": "Pyrin and HIN domain-containing protein 1-like", "gene_name": "Ifi214", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNKMQDEYDRVKIADLMEDKFPKDAGVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNEDAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQTSSRSSETLQSIIQSPETPTRSSSRILDPPVSLGTAYSSAQALGVLLATPAKRQRLKNVPKEPSEENGYQQGSKKVMVLKVTEPFAYDMKGEKMFHATVATETEFFRVKVFDIVLKEKFIPNKVLTISNYVGCNGFINIYSASSVSEVNDGEPMNIPLSLRKSANRTPKINYLCSKRRGIFVNGVFTVCKKEERGYYICYEIGDDTGMMEVEVYGRLTNIACNPGDKLRLML", "length": 393 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54B59-1", "protein_name": "O-methyltransferase 12", "gene_name": "omt12", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDWDKTMDLLFGFVTGHIHSRMFETILKFSICDLLEDGPKHYSEISKIIGFKNESYCYRLMRYFVPYKLFNESVVQVGLFSKTPSSTQFSKNGTLKNLGRFHCQDHHYRIFESLPKTLEMGKNQGPSSIGLSSFWEHFETDESYKQLFHNAMKDYTSLIIDRLISKISLSPNFKTVVDIGGSHGFLIGKLLESNPNIHGINFDLENIINSSTSKNENFQHPRLKHVSGDFFNSVPEADCYILKYILHDWSDEKCITILNNIHKSLKPNGKLFINDLVLDPSNYTKEAVFKDILMMQYFDAKERSINEWHQLFEKCGFKIDSVDTSISPQLMIVSKINSSNINLNDCTNFNSEIVEEKLKNSLPQFVNC", "length": 369 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B60-1", "protein_name": "Probable inactive O-methyltransferase 11", "gene_name": "omt11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MECSESLELVDKFACGHILSRMFNVVMKHSICDLLEDGPKHYSEISKIIGFKDDSYCYRLMRYFVPRKLFKESVVQVGVFSKTPFSTEFSNNGTLKKLAKFHCNSFHYKLSQVLPETLEIGENQGPSSIGLSDYWEQIEKNEIYKNEFNDGMIGYTTHILKFLKGKIDLSKFETVVDIGGSHGYLIGSLLDRYPNVNGINFDTDMVINSSNEKYQHPRLKHVAGDFFKSVPEADCYLMKLILRCFSDEKCCELLKIISKSMKSNAKIIILDIILDSSKYLNFDTYLDILMMETLDGKQRSLSEWIKLFEMSGFKIDKYESGSPNYLIISKE", "length": 331 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B86-1", "protein_name": "Hly-III related family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPRLDHKKNKEEKDNEPLMMVNNYNIGIQTDNNQEDIQNDYHHFNDLSINIKNNKNNNNNNNKCNSLHHKHYHNRFIINGGNNNNDNNNNNNGDDCCANIELFVDLMLSENEYILSGFRLHTKNSYMECTKSIFKLHNDTLNIWSHLLGALFYLVLFFTSIIKIIKLNNNDGGGGGGIGNNFILNSDEIKLLETIDLPSNFNYLFFQLSCFICFLSSTIYHTYRSHSIVVFKTTLMLDVASIALLILSSVCLIIDSELSCWPYFKRIYLFSFLILILISFLSLPKIMREKRYGLRTFLFAILALQGLVGHLFKIYLQGYFDKDPNQFYNLIGAYTLFGLALSIRRFKVPESFKPGHFDVWVNITFNIVYNII", "length": 372 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54BG8-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGKIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54C66-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKTKKYKNPFPTNSYKEPENDSDNEYILHNEEDNEDYGSNNNNINNDGFSYEDNIENSDTEDEREDYGYINYNTNNEEDDEPIDLSTPIKKKKANNKSFKPPYKNTTTTTTTTTTTPPTPPPSKSNNNNNNNNNNNNNNNNNKNKENINKESEYELNKFLDLYNDFKSESDNKVKPTATTTTTTTTTTSTSTSKLNKDKKGVIVIESDEEKEDNTIKINKRNGKRKEGEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGNEDNLKSENFNKFKKLKSFSNQPTPLPPMLSNPFLNNSGNSHNNNNNRILFNSQFTNASNLNNNINNNINNNINNNINNNINNNINNRNNNTNNYTNNNNNNNNNNNNTNNNNSNNNINNNNYNNNNNNSFSFLPIRSNTLPTIVTRRTGIQSSSSDNGNSNSNHSSSMNKRNTSKSNNKKSTTTTKTVLPPPLSSRTQEEEDYALALSISEGLNGGSGGGSGSGSGSSDNSTKTKRSKSENDLPNEETRHQVEMDRRFAEQLHREQHENINQIQQLQRRLHLNQQRTNNINRNHHGDEDEEDIEMLNLRAYQQIQQQFNQHFNQQLNQLANHPLANLFSHASRGRGRGARRIPHHPHHHHHPHQAQYLTGLSQEQLNLMTRDFSSNDYELLLQLDENINNKGATTSDIENLPVHTLNKPTATTTSTTTTTNSSTSDDNKKNEPTTDVTCCICLCEMEPGDAVRTLPCKHFFHVSCIDQWLKVNKVCPIDKKAIDEK", "length": 766 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54CY8-1", "protein_name": "Obg-like ATPase homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKGIKLFNNFTNTKQILFFRSFSTAAKGDRLKASHYVKTRGSCKSISIVGLPNIGKSTFFNALTSSNAAMAANFPFCTIDPNIGKVFVPDERLDYISDLLKTKSKIGVQLEFVDVAGLIKGAADGEGLGNKFLGNIRQTSLICHLVRCFEDKGITHVSDEIDPIRDIETIETELILADLQSLEKMLTEGKKKQSNPELQMKFDLVKRISEYLHKGLPARDVEITDMEWPVFHSLHLLTSKPTIYTCNVAEGDAATGNKYTDLVKEYSKSKGLEIEPVVISAKIESELANMEGNDETKKEFLQLYGLENNGLSKVINGAYKLLGLQSYYTASSNECHAWTFKAGWTAPKAAGVIHSDFEKGFIKCDTISYNDFIECKGDEKIAKEKGKQRSEGKAYIVNDGDILFFKFN", "length": 409 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54D44-1", "protein_name": "Probable polyketide synthase 42", "gene_name": "pks42", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIESQREFNCIGGDNQNGVAVIGVGFKIPLDLENCLSSPSELYSALFNEFDSVTKNTSSRWSDNYFKNGDIVSLSAGLLPLREIKSFDPTFFGINPSDADLIDPQQRLLLKCVWNALEDGGIDPISIRSSDTSVYIGCSTIDYFLLNRNPVDPHNHGIQTASYSIPNRISYCFDFRGESLFVDTACSSSLNAVHLGYNSIINLKSKLSIVGGSNLILDPQNSIFFSKQQVNGPSGKCNSFSEEADGFVRSETVGVVVLKNLKDAIKDGDRIYCVIQGSNSNVDGNYEKLNYISPSKLSQAENITKALKSTNGAVNASDIDYFECHGTGTPTGDPIELEGISIALNRTQQSTTLSNPLLIGSIKSNIGHGEASSGIASLIKCCVMFKYRQFLPNINFKTPNPLIKFKEWNLKVVTEPVPFNNNKQTIMAINNFGVSGSNCCIILSEYKSNNNNNNDFKATTHLKSKKFIIPFSSNSSTSLDNYKSLLSNETNNFQDFVIKQINNKSTSLIQRSVIIASNWSEFNESSNEIQSNIKKSIISNITIKKKNAVTVFVFCGQGSQYNKMALSLYENEHIFKSTMDKLDKELSKHYGYSILEKLRSITDEDLVTIHQPILAIPVNVMVQVSLYELYKHWGIKSDIMVGHSFGEIACSYCSGMVDFKTLCYLTYHRSVAQNKTIGSGKMLSINIGAKEYLDSYSTKYPSVEIACYNSETSIVIAGNEELLNEISKDLKSKDIFTAMLPSLSAFHTTHQSVIKDDICSLNFKSTLSKITVFSTVTSNQFGINNNNNNNNNQLNSNYLFQNVIQPVKFSETISNIYKYIESNDMGNEITFIEIAPHPTLQYYLNQMKSQQSEYFNNGEKISIYSACNKKKNDYNEFLKTISTLFVNGYNNINFKSQIINNNNNDNNNNFNLPLYQWDDNEYYKIHPTWKKANKNGPSINHLGNLNDSSIKSFKTYINTRKPQFQWLKGHSLKGKVVFPGMGYISNLLSVYNMNQDITINEIQFKSAFILVDGVNNCLETSIVPLTKNEFNIKFHFKDLKTNKWVLCANANYSLFKHNDNNDKLDIEKLKSNCNYTIISKDELYNNIRAKSGLIYKGLFQGVKEAFIGNRCSLTVLSLNEIENQQEFKHLLENRNFNSLFNTAILDSCLHGSLHSKEQSQIYFDKCEGFKYYSNNINLATSKRNEYKEINVYIETNPVINSTVIVSLKIMLPDGTLLIEIQKVVCKSSIPIIDSTSVIQPSPKDLHTPYYQPKNSLIKPPQSFKHLHCMKEFASIESDNREMVYMSIYHLIFKAINARSPTKINLESLENLTLDQFKELIKDSAANIQRSNQFIYECLKLYHTNHSNYKKNQIKDFIKECEDFNGYNQIIFKTIKIYAKSLFPLPDDDPFTDTIQSLFEDDQLENVYIHLKHLYPVNNLLSEIVFQSIKPIINQTSTFRILEIGAGYGTISQLIFDKLEQLLADNFTSSRIDIEYTFTDISNTFLPRAKERYSKYKRFNIIYKLLDLELPLTEGIQDFRPLYYDIVVMSNVLHVVKDINFSTNEIYKVLKQNGQLIFVEPTYKNLYLDTIFGIFPQWWSFNDDIRTDRCCLEPSKWFEFLETINFKDTIILGQDNKEILKNVENSIILVQTRKPSQLELSINNSPSTNQFKSFENIILYTDDNQQPNDCSEIIDLLKSLELPIKIINNIDQFNQIIKTQYNNNNNNNNNNNNNNNNNNNNTNNNLIIFLKSVNQLNTNNYKDITFEYVQINQILVKLELEENYKLLLITNNSQSSNYLSNSLIGTSRYLFADIVSSKLDIITIDFDTVSIKNHQNVISVINHLLDSKDNSEREYYIINNEINIERYKNESNIKHQLKSKTFQENKDELMVQLDSNLEYRLKSKSKQELKSTHVEIQVKAIGINYKDYATYSGLIDSIIEIDKDKEKDENYDQNYPSIGNDFSGVITRIGSDVRKFKVGDEVCGLAPKTSASHIITEEGYLCKKPSNISHSEAASSVTVYTTSFQSIYSIGDLKKNETILIHSGSGGIGLSALEILKWKNHQGYIFATVGSEDKVKYLTDTYGSFITGIYSSRDKDYQDQIKEKLKSLGCDIDHQGVDLILNTLSVEYMDSNFKCLNQKGRCIDLSITHLTPFDYMDYNKFKFNVSYGNIELVVLPSKIIKDHLKKMLKAFSLGSLRFIPIVEFSNLNIRNAVEYINQRKHIGKIVVKNDVDFINKLFIEQQQQQNSVENNEILMKDKYDISNLELGKNILLTGQTGIILTILKWLYKHSNNSIENIIIISKSKLKWELELFINESTNNRIKIHYKQADVGNNNELNQCFEELRLRHSIEDINSIFHFAFINDIGQFEDVNMNRMDIAHHAKAIGSLNLHNQSIERKWNIKQFVLASSALSVFGGDNQCCYISACSVLDSLSKYRKSIGLPSLSINFGGVTSTGFVSRSGAVEANLESSIINLITPQSLISSLDLFIQNSQTFSNYTHFNFIYDNIESYSLNRMLFKFDYLINQHSSLVSNKRLGGINENNNIGDLLVSKIGELLSIEPSKLNLDFRLVDYGLDSLVIVQLKNFIDKQFQPHLISILQLQNNKISTTIEIIIKGYNNNQNKKIKNEQSNDIPSVVQKETIKDNNENKDDIKIDMDDKKENLKGKKENIDDKKENNN", "length": 2655 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54E06-1", "protein_name": "Transmembrane protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTIINNDNISLATSAKLSQFIVSGDYKGPFTIIGLKTKILSFSLVIEFILLKIELIKERKDGLKINFDDSISGSCNYELNYTKQDTLFQRFQSKFKIEHTINPENGETINTGITLKKLFIISIPMSILFVALNWIWMLAISMTEVSISTALYLKILKTISVIIFMGGIVGIAITTVGTSKGEYPHAIKGEILMIISAAMWGLYEVLTSKFIGDANRTIVHTYMGLIAFVNLILGIPVIVILNVTNFEPFSVPSISVFGMLLLNAFVGFSVNYLINWGLSVTSPLFVRSGELMVIVATLLFDIIIKHMKLPLLALPGYSLIVIGFILSVYIESRDIKQQQEKEKEKQKNNNGETESLLNY", "length": 359 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EC9-1", "protein_name": "DUF781 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKIILIFFLINNIFSIVVSSTKLNPWVFEERIKLYDILINSTKVEIFGDDNLNNCFQGFKIQLEWQKTTGRSMIIDNSNISVNSWWGSMNYYESIIPFISAMNLGIIQPPIELVNIGDDRFCTDYSECDKELMEPWDLYFQFLIKIKDEKYSYSIQQQILKYNWDGHMKSLSIGLKLFNDKLNYLSKNEIKFSTGFVHFVDIISLINFNTNYSQILPIFDSLPPRMLTNSDHPPFFKGFTRTQNFYTVSVLSINELHENQILWNYFLNLLKTKTENEKCRDFINQEIINFTKYPESTLVKLLLKLLLNNC", "length": 312 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED6-1", "protein_name": "Probable polyketide synthase 41", "gene_name": "pks41", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDSKNLVDENCNKVAIIGIGFRFPNLKGDITPNELWSKLLNRYDGIVKNDRWNESFFKSGDISTNYAGFIPFEELKSFDPLFFGINPSEGIHMCPQQRLLLKCTWEALEDSGIDPIEIRGSNTSVFIGCSGADYQNLNKNDNKVQQEIFSSSTHSISNRVSYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNISKSYSRLNILSKDGKCKSFDAGADGYVRSDAAGIAILKNLNDAIKDDNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGQVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSDNPLLIGSFKPNIGHTESASGISSLIKCCLILKNQCFVPNLNFNKPNPLIKFDQWNLKVVTDPIDFSTLNYINKRVSIAINNFGVTGSNCCLIVSSFKGNQIRNNINNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVVIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNVTMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLNEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKKDGVFCAILGSPTSFHTSSQLSVKDEILKISFKSKQPTIPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEVIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSDHNNTNNQTRVNLPLYQWEDQEYWKLDNLHQYHLSNGPSINHLGISNSNHTPIKSYQTHINIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGESKTDTNPNKELPDILISFIEFKTPLIFMDGISQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGPNLNEDDEQSLFMYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVDKCYLGYNCSLSEISIIQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEELTYYSSKVPKTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDPLAMEYPTNEIYSCNLQSKDSLIPSLSSFDHIFKRKIPNEYVDQINIYESFIPKLLFSNINKRCPEITIDEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRFNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIIGDGIFGVFDQWWSFQDTEIRKDRCCMKQKTWYKLLKSVNFNDDIRMTPELTCFVIQAQKPSISNLSFSKSETTNYDSIIVFGNKYASNLSNHFIKSIDNGNLQFISTIEELNKIGKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNCKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITRISTGSKEFKVGDHVYGIGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITHYSIEKVKESIEFINERVHMGKIIINHENQDSIINELIEKQKSINKFDQSIFKQNYKLEPSLLGRNILLTGQSGIVLEILKWILRNSENNSIGNIIILSKSSIKWEMEYLINKVKLINKLGNFFNNIKFHFKSVDISDSGLIDESINKLLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKLKNFIMSSSVSSKTSTANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIESTGFVSRNESVAALLSGEGFIPISANLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISEILSTDILKLNKDIILVDYGIDSLVIIQLKNWVDKEFSIPNELTIQKIQNSTINSFIQLVKNSMDKNKK", "length": 2542 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED7-1", "protein_name": "Probable polyketide synthase 40", "gene_name": "pks40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDYKNKYQSNENCNKVAIIGIGFRFPNLKGDLTPNGLWSQLLNKYDGIVKNDRWNESFYKTGDIPTKYAGLIPFEELKSFDPLFFGINPSEVIHMCPQQRILLKCTWEALEDSGIDPIEIRDSNTSVFLGCSNFDYQNLNKNNNKIQQNIFASSSHSVSNRISYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNTSKSYSQLNMLGKDGKCKTFDADADGYVRSESAGIAILKNLNDAIKDGNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGGVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSNNPLLIGSFKPNIGHSECASGISSLIKCCLILKNQCFVPNINYNKPNPNIKFNQWNLKVVTDPIDFSTLKLSNKPISIAINNFGVTGSNCCLIVSSFKGNQTNNNNNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVAIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNATMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLSEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKQDGVFCTILGSPTSFHTSSQIPVKDEILKISFKSKQSTYPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEIIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSNLNENDNIQTSLSLPLYQWEEQEYWKLDSLYQHHLSNGPSINHLGISNSNHTPYIKSYQTHIDIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGDNSESTTNPNKELPDILISFIEFKTPLIFMDGVNQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGQGLNEDDEESLFKYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVEKCYFGNNCSLSELSLSQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEGLTYYSSKVPTTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDSLAMEYPTNEIYSCYLQSKDSLIPSLSSFDHIFKRKITDEYVDQIKIYESFIPKLLFSNINKRCPEITIAEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRVNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIVGDGIFGVFDQWWSFQDTEIRKDRCCMNQQTWYKLLKSVNFNDDIKMTPELTCFVIQAQKPSISNLSFSKSETTNYNNIIVFGNKDDSNLSNNFIKSIDNGNLQFISTIEEFNKMTKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNSKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITNIGSGNKEFKVGDSVYGTGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITEYSIENVKDSIEFINERVHMGKIVVDHENQDSIINELIEKQKSIDKFDQSIFKQNYKLEPSLLGKNILITGQSGIVLEILKWILRNSENNSIDNIIILSKSSIKWEMELLINKTKLLNSNSINSMGNYLNKIKFHFKSVDISDSGLTDKGIHELLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKIINFIMSSSITSKTSSANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIQSTGFVSRNESVAALLSGEGLLPISTNLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISELLSTDILKLNKDIILVDYGVDSLVIIQLKNWVDKEFSIPNALTIQQVQNSTINSFIQLVKNSIDKKNKK", "length": 2552 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EN3-1", "protein_name": "Alkyl transferase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNCSNNSENCNINDNKKKEENVKNQNSNKNSNNNNNKSNIESIILNKKSKFSSEKELDEKENKDLKDLSNNKPINIDEYEGLPRFENEQNARSKSSLWSKLCDWMYDQNFKIASSTLKNGPIPKHIGVIMDGNRRFAERNHLETKEGHKKGFNTMLDLCQWGLTLGVKIISVYAFSIENFKRSKSEVQDLMELANNKFTEMISKSHKLQQLGVRIRVVGDHSHIPEKTKSILAKAVKSTENNTKALLNICLSYTSHEEILHSMKILSKGVNQEKKIEIEDIDQDLFENCLYIKEDLDILIRTSGEYRLSDFMLWQSCFTNLALVNTLWPDFSFFHFIYIIFLYQFNSKTLKNEIQNQYKFNNNNNNNTDNNNNLKENIKNLKSDQRVKEFINHLKISEEKLFDEFISKYNEEEEEEEEI", "length": 420 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54F52-1", "protein_name": "Saposin B domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLIFIVCLLLIFNYFIGISFGNKQINSNQQQQIINTDKNYNHNKNNKIIVSHNKNNNNNNNYNEIETENLGCTFCKYLTEKVEEYLQANSTEKEIISYLDEECELLNSPNLVLTCQNLVQQYTPIVIELIDNNESPSVICENVNICPTSSSSSSSSSIEEEIIKKLNIDDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEEEEVNTCEICNLVSNLIEKYIKINNEVDEIRELIENECELLSNSKVSSCYSLVDQYFEHFYVTIENNYSANEICQLFQFCPIESSSSSSSSDIINNIPLQDSGCTVCTVLANYAYKVQANESIPEIIGSMDEICNKIGAWRDICNSIMRSGGQQLVEDIVNKGEGVYTACSNIGYCQSSSSATGTSGFSSGGSGTSTGGGYSTGDFYYKPLK", "length": 416 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54GT5-1", "protein_name": "Endoplasmic reticulum junction formation protein lunapark", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLFSKKNGFEKQLLDMETKILNLEDKLSNSRIFHQKVLHKIVLYSFAIEFFIILFTYVKSRSLESIPEKLFCCIYLVLFPIFILILTKVYGFVYKYLIKKNEVRLDSLKTGLQKKLDERKRETDYENTQKLLDRYEKNPPSPTNKPLGPPNLNNNNNNNNNNNNNNNNNNNNNNNNTLGNSMRNRNQPFNISSQQNQQQQRMIQPQQLSPQQLQLLQQQQRLSQQIVPSQQQQSQSQPQQQQPILNQPYNINNNNNNNKPPPPIQLPPQQSSQYIGNQQRLPPQQYQNEQKSKWWLDKLVDYLISDGPTHGSPLICSNCHSHNGYVPVEELSNIQFRCRVCKTFNQRDSVNNSTTNDDRNNSQNTGSNQQQSQSLQDQQPSIEEIDKNFSVTEQKNETNNENYSDSEKQLEENNNNNNIDNDSGSSSSQNTPNKKKGKGKGKGTPTKKTN", "length": 452 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H60-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLDFFHLKDVDEFFRLLEKKNLQNLDNQIDGPGNLNWRTTYTEKDFSKVPKFRGIIHIVQIRDLGTKIHRDLLYEIMFEKLLDIARLNNESKLLKNEIQDLKTKLDEYHNNNSTTNTDLIINSFINVIDTTTTTTTTKTTMGATSIDKKQSEGDSIDKSIELDFFKIKSDQSQQSSPSHKLEEKQNQVNNITNEIPQESIKTVKQQTQTETNQQTFSSTSPSHQNEEKQDKQEEVKQEEVKQKEGIQKEDKKEEDKKEEGKQKYGEIFIIEIPQEEEKQKEEGKQQDGENFIIEIPQEEDKQKEDKKEEDKKEDKQEEDKQKEEKLEDKQKNGEEFIIEIPQNETLEIKVDTHPRSSNDDVSTAEMEVEALKTPLFAETTFVTKQQVITNKKLLVYKQSDFFPNMTTLLQSRLKDVTVQEVKDLTKIGLNDNSYSVGDFENVFVLYAVSCMGARTDSERDAFKIKSIRSIIGDKVPIIYGVFMIGKNGPTRIKVEHTQTSISITHSMSDIGRNLQNNENLKQLQSFLQQ", "length": 529 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H72-1", "protein_name": "Tudor domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNIDFEDYEFYDDSDFEINTVDESVMTYSSVFDFLRFGKIPKFDTQTKMKHFKDNISKYRIESKDILHTNVDSKILRRLSEIPRVEKIFPDPNTLQLEVFKPNHELRNSNGELLSKHRPLQETLKLIEKQYYWECKFIHTSMEVDITKLYSFCDLCSQSSVSRDMDIDSNDEDKILEQMDIVEKSFSNDRNNNNNNDDNNKSIDEKDKMNICGIGIDLEAIKEGKLFEDELAEALGFPEYNSSVDNSFNSSVNNSNLNNSSLNNSLNNSKNNNNNDDDNNNNNNNNNDDNNNNNNNNNNNNNIISNIDNNNNNNNNNNNISNIDNSNNNNNNNNNNNNPVNDDFSFIIPKDYQSKNHLNDNENKDDEKDDDKDDDKDDDKDDKDDDKDDDKDDDKDDSKDNGYIKTNVSLSSSSSSDNERDDGDSHSDKSVDNDENNNNNINNIISDCNNNNNNNNNNNKINGRTFTSRRTRSDSNTSNSSVGSYISNSSKSSANSYDFSSSDQDYKSPNSPTVKKTRGASLVNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNSILKPKLKSKRASASTAINSFISQFITPKHPPKSSSRLKRANRSNDSSDSGDSSSNNSSRSSSDSSDNENNNSYYLPIQSRRSTSKQILKDHLKSPTKKPRRIIEEDFYHVEEKKSPTSKISTPISRSASYNFGRSSPGSSPGSSPSLSPYSSPPQSPPHVYNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNNNNNNNIRSILKSPQSPSISPIKTPRRSPQQQQQLQLQLQNYIPMPTKTKTPTKAPYVPNYALAPIEPKPTQKTPVHVFGGNQLSVKKRQTIEDMITEVLKMNVDTAALKLPLPKVGQHVEGKSNMEDYKDAWFKGVVKEVLPNDFFLISYIDGGEEELSYTRLKPNLTSELEPLKLEEIVVGGEYLGSYRNFYYNVYVLEILRHSIRVYFADLEMAKTIKYSQLYLLSSFVKR", "length": 998 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54HE0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 5", "gene_name": "cog5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNNNNNNEGVSSSSSSSSSPLPNISSPNLISNSNIENDIEIKKKSNNNNNNIFEGDNSHIYNQFLGEDFNVVHYTSNALKVSSISLSLNTLTSCTRELGQELTENITTNYDDLFKLANNIKELDQLTDTLKLGVSNLEESIQRMKNDISEPYNKVKSHIGQLKRVQDSCELLRKLIRYIQLVKKLKNHLQAGSRDLSKSAQCINEINLLKKDSDLTGINIIDSQVVWIKTCSDQIITISSTLLYQGMENQNQTDVANSLQVFHNMTILNEKVYSIVNLTTEKVIKNIKALLNVNKLIADLPKTTITNNINNNNSNNNITTNNNNNNYNNNNNNNNNNNIISTSTDKSIWLKFESLIDTLYSSLIQILHLQRVLLKIKDPLTHKSLMEVLLIKQHQLQQQQQQQQQQQQQQQQQQQQQQQQQQQVGTTSNNTQPILIEMISTLFWKSILKVLENNLLVAAKSSNIIENTFIREYPKVSKFFLDFIKKLQNYIDIHQMDIQQQFMIVLSNINQIIGNNNSNNSNSNSNNSIESSLSTSSSSSSSSSSSSSTTTTATTSLILLSADDYKLSLFKSIGLFEKAYLEYSQSKMSTIVNGLFPQSTWSSRSTLPVIPNGKQLVDLSKTIWSEIEWLVGNNDRQLLGKLMLVVSKVIDLFSSKIESMVQPPGLIVLNSNIGSSSSTGGVNNNSNSNNNNEIITINENSKPTPSQTVNTLLFNVSIQLNSSIQSLLTSQPLERESIIVIEKSLNSLITICTNIITPLMNSFFTHIEQIFSTIHNEDWYNEKTTKMLINKSNQTCSSYMESFKTLVNYFQNQYLMRFTPCQLLNNQIKSMISKIFIVYLKYCSLLKQPFSENGKLKMVNDLTHLEFAVTPLLVSGGIKEIGESYNLIRNYKQSIFN", "length": 898 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54IX3-1", "protein_name": "Probable polyketide synthase 26", "gene_name": "pks26", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METNNNKNIQEDIAIIGFRIPGCQDNTPSELWNNLMNKFSGVGKTTERWSDNYHLSGDINNGNSGLLPLKEWKKFDPAFFGINPTMVSTIDPQQRILLKCTWEALEDAGIDPIKLRGSNTSIFIGCSTGDYLDMVKSNNEIQTNLFGSVNHSLSNRISYCFDFHGASMTIDSACSSSLNTVLLGCQSINQGKSNLCIAGGVNFILDTTIPTAFSFLNILSKNGKCMTYDEGADGFVRGEGAGLVVLKSLKDAIKDGNNIYCIIKGGNTNVDGNGNADKANFFQPSKQSQSDNIKLALESIKKKSMLDIDIDYVETHGTGTPTGDPIEVEGISKVFKENHSPENPLLIGSLKSNIGHMEAASGVTSLIKCCLMFKNKSFAPNVNFQKINPKIKLDEWNIKVVTEAIPFKKNKITSMVVNSFGVTGSNCCLVLTESINNNNNSNVDKITKNEKEYLIPFSANSNQSLKNYIEEVSKIDESLQFEDFVYKQLSNKSTSLFQRFVVTSKDWKELKYKLSQPLPLKEISSSISVKKPNPITVFVFCGQGSQFNKMGLELYNNDKNFRNYIDRFDKKLLEYYGYSVISKLRSIDDNDLITIHDPIIAQPATAILQISLFELYKHWGINPSFIVGHSLGELPMAFCSGMIDFDTVCYLLYHRSLAQSKTNGCGKMLSCNISSEEFVKNYSPRYPFLEIACYNSPNSIVVAGKESILLELSKEFKNSGIFCAMLGSLSSFHTSSQLEVKDHIYSLKFESKEPVIPTFSTVTTHLFNSNKLYDNDYIFQNIMKPVLFNETISNLYKHVENNQLGSEMIFIELAPHQTLSFYLKQLIPKDSNYFSNSNSITILSPLHKKKNDYLEIQQTISTCYCKGYDVNFKSQILIESKTNISNKSLPLYQWDDKEFWKDLEKQKRILQGPPMDTLGFSNEKSPILKSFETKIDIKKKPFQYLKGHIVKGKIYFPGVGYIENLLKMYPSQDIDIDSMEFEAPLILIEGIVTCLQSNVYKIGKNEFKVQFHFQDQKTKQWIQSSFANYHLSHRDDFDPTTNKLNIQNLISNNCNLTKLSKNQFYNFIKAKAGLSYNGEFQGVEKCYLGDNCSLVEIPFDTSNQDVETNINMIPILDSCLHGVHILYVEQCQMVLEKIEGLKYYSSTLILSKQKEQQKLYVFTRIENKDLINNSISASIIVMISDGTVFFEIESVSLKSLIPLKDPISIENPTDELFSSYLQSIDSLISEPSSYKSIYKRNEFISSGMSDLSRSDYQQFISTLLYTNLIKRNQSIESDLRNQIEFEEIKAKYCKNSKFERLFTFVIETIKQYDGINGNLNSWNEGNIDIYKILIKSTRIISKLLFPLQGEDTTIDTPQSLFENNLLDDFYNINGNTVIQNQLVGEIITQSIKPLINEKMVFRILEFGGGVGSLSIVTLNKINQLLEQHPNFQIDIEYTWTDISPSFIPDAKKLLSNIKGVTIIYRSLDLEESLIEKQLLKPSYYDFVIMSNVLHVIKEIKFGIDEIYKVLSPNGQLLFIETPYRMLICDSIFGVFDQWWGFTDTGIRVDRCCMKQKTWFKLLSESNYQDIIMSDDIKDCCFVIQAKKPSISSLEYKLKIDSQENDKIIVFGENDTFMKYLENKSTKQIIKIKTCQQFSDLITSNSKEINNQSIIYFIKTLNQLLIENFKEITLEYIQINQLLLSSGLSCKHILLLNQSTSENYLGSSISGAARYFDEFPPLKLYSFDFDKYSLNNESINIIDDIIEPIIKSMNNSNIRKELLVRNNKIFFERYKQEKRIKENYKSTSFENDKSLFVHLNANLEYELKSKQVKLKQNEIEVNVKATGINYKDYLVYTAMTPSELINHKGESNPEFGHDFSGIITRIGDDDGDNDNEFKVGDQVYGIWFNTTASHIIVDKEFLCHKPSKLSHTIASSIPVVYITSLYSLYNIGNIQNDESILIHSASGGIGLSALNILKWKNHKSHIFVTVGSKEKEKYIHDTYGDFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIIDLSITHLNHNEYTCNNNFKYNYGYHNVEVLFVKGDIISKLLKNITSAIENGSLSTGIPIIEFNDSDCFNAIEFINKRQHIGKIVVNHNKENLIQELIKKTNLPIIKSNYQINSDHLGKNILVTGQSGIILEILKWIVKYSTNVENIIILSRSSLKWELELLVNKNKNKLNFIYKSVDVGNSLEIEKVIDEILMENPQINNVDSIFHYAFTQISCKEHEIDQVHLNVSHQAKTMGAINLHNQSIKRNWKLINFIMASSAAGLIGSTDQCSYVCSSNVLDTFSKYRKHVLGLPSICINYGLIESTGFVSRNQSVAVMLDGQGIRPMQTNQILGSLDLFIQNPSKSTNIILTSFNFNEFATGNLQQSNVHKFDFQFNCCLSQKSKLMANNQASENPVKDLLINNICELLSIDESKLNIDIRLIDYGSDSLTIVQIKNLIDKNLLIPNLISIQMLQNNSISDNIKILTDSYNKKKQNEQNELKNIKVGSFTKK", "length": 2531 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K45-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKILYLIIYLTLTIVKGAPLYNCKKLNCSSMNTNCKVFGCSPMFGCFETSKCPQSNVDICHTNHCDENTGSCYQIADTCNDGNNNTIDSCGPYGCVNTPVNPPEPTQSCEQKCNDNNPCTVDFCDFRGDCYHYETRCSDYDACTLDTCGEKGCEYRPMNCDDNNPCTADFCSMLYGCYHEPIECSVKVPCRTDSQCNRNNFCETYSCDLSSNICDYYTRDCGGNPCINNECRTGTITN", "length": 239 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K50-1", "protein_name": "Phospholipase D Y", "gene_name": "pldY", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIINRLFIIIVLFFVNVNSKIISESTLNSCQGGTIQIAESIPLGLDISTNLSTHDAWMDLITNAQESIDLGFFYFTLLGGSDLDPVYGGQLGIDIFNAIVEAHSRGINVRIVQNEPSESFPDTETQTLAKLGIQVRSIDWVSLVGSGVLHTKLIIIDESSAYVGSANADWSSLAQVKELGIVLKNCPTMVADTEIAFQQYWNAADFTSLPINDWGSNYQALFNNTNMASLSLNNNNNNNNKNKNNDNDGSGTNQMYEMFLAVSPPQFQSTYRTGDIDALMDAINNADQSICITVMDYTPTTLYNDPNTYWPLIDNALRAAAFNRNVQVRMLISHWNYTSPIIPQWLHSLNQVDNIQVRWFVVPDFSTNPQIPYTRVNHAKFMVTEKQSYVGTSNWSQDYFTVTGGLSYNVFNNDFTNQLQSIFNRDWNSPYTQPIQNF", "length": 438 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K65-1", "protein_name": "Band 7 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIKKLSTTAIKFTKQTQRFNKRGFFKILNQYERGVVFNFGKFHTVKEAGFHIVIPFIQKCDIVDIRTFTYTLDKQKIISKDNINLTVDALVVFRIHDPKLAVTKANDCILLVNEMAQIKVCEILSHNTLDQVLHNRDKISNQIHDELKEALNKYGVTIEYLKLKDIHFDETIAKAIAKKVEAANLRDIKN", "length": 192 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KF5-1", "protein_name": "Protein LEG1 homolog", "gene_name": "leg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSNKTIFLILLFLINFNSIYSFNFKKEIKISNDKINLPTYNPWIFQDRFNLYSILINSTNIPVFGEDNSNNCLHGLQLQFEWQNRSGRLEINQGHVNTKSWWGDMNYYLSIIPYLSAMKMGLVPVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIGSIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNSNDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFMYLLKKMTKNEICRNLINNEINIFLNSPVPTIIEILFDILTNNC", "length": 326 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KK9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTEVPNQKHNDGGVGVTVGNFVKDNETNVNNNNNINGKGENDNNNNNNNNTIIDEPKLLNNNNNNILVIPLTTNIIDNELNQQKQHTLPLPLPPPPLPTQPQQITPPLPTQTQLPNNMLPSPRPIQQPKIRQQTQQQQAQMQQLQLQIQQEIQLQLQQQQQQQLQLQQKQNESEINGLFSPNFSSSSSSSLSTTPNMHSPLFNNNNNNNTTTTTTTTTTTTNSSTNNTNSSTQTKNASTNKISQDVIGVFDDTDTESEGEEYHSGRSIDFWNKDYKDIAWRCNWIDLQIRDLQYQSMVCDQLYHKVRRSKQKIIPDNKSLSSSIDNNNNNNLKSIPIETIDHSNNAITSSNIPYSNNEEEQQEQQQHPSQSIRTTSVVKLRKPRKLIRRPTVKLSAKQMTTDLEAHPLFTFHKGYFKFENAIKTNIINEMEIKYQEKEKPPKLLTLSEERLKQYINSNEDVDVVNLFATNESKRLSEKRRGRIPSDKKEKVSSHRLKSGDEIDGTSSSTATATTATTTTTTTTTTTTTNKKSRRSRREKKKEKEREKQEKEKHIKTKDEQKDREKKEKAREKELEKERKREKERIKEKERQEKERLKKEKELEKNKKKEKKLLKEKEKEIKEKKVKLKNQENIIEKDLTINNTTTKTTKSKKSSSKVKKSEQEGVKLENVEIEDEEVEEEEEEEEEVEDEEEEEEEEEEEEEEEEEEIEEVEDNEEEKRKEERRRRRRKRRILRRRKKLRRKQRKRQLFLQKQQQQQLLQQQQQQQQQKLLQQLKKRDESNGLSYKEIITPEWRDISSFANNDPSLPSPLLLSNPLLAQDIKNITTTTTTITTSEPISKFSTITEEELLIRQTTNGIDGTPMNGIGEDSESSGSEIELDEDAMKIIHARNEIEEKRRFFNTIKQIQMENPVPSYKRKKESLPVEFVAPTVEELLPSYHFNKKSIKLLGKSWNGDFEYYSSSDEDDYDDSDDYDSDDDNDDEDDDDSDSDDEDESDSDDYDSEYDSDLSDSDDSESESSDNELDGLYSSESEINHNSSGDEDEMDVELNNHHIPSKNSKNSKKQPVNNNVNNSNNLNGSSGGGKINSKPSKQQPRNSKANPPSKQQPTPLKQQPTPLKQQPTPLKQTTTPSKATPSPKQQSQQQQQQQQQQQQQPQQPQQPQQQQQQSPKPTPPLVSTTPPLSSVPLSPPTKTIRSTRGVSSLSNSTSSLPKQTNTPPISILSRKRNQSQSSVTDAPLSPTTTATTTTSPKPTTRRKGKLQETIPVEETKIIEETKPFEETVPIKENSTTTPLKRTRRQTKQQLVNGETTTPLTNGDNHVEKTDSNSTDVKVDPTSWWGDKQYKIQPVMEATVIRFKRVKNDDGDDDDQIQNNQKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNINNTEDLESKIKETKSINIPMEISTNGNDFQMKEKEGE", "length": 1472 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU3-1", "protein_name": "Probable polyketide synthase 25", "gene_name": "pks25", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNSYLNNPQFDINNGNKEVTDDDNNKNNQDNLVAIVGVGFRLPSGENERNNTPQALWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGITPNEAQTIDPHQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGSSTNDYLTLNRNEVKSNVFGSMAHSIANRVSYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDPYPYKAFSILNMLSKSNGRCKSFDASADGFVRGECIGVVILKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPNGDPVETEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNENKNTSMIINNFGVTGSNCCLVLSQFNNTNKQKQQMKTKINNYLIPFSANSVESLKKYQSLIINSKENELKYSFEEFVKNQVFIKPTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKRSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGLGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGAGYIDNLLKLYPNQDLTINSIEFKTPLILSDDNGQFLQTNVYQTGKSDYRAQFHFKDNRTNVWVQTCTANFQLYNNGKVDKLNLEEIKSTKCNLSSIPWDKFYPHIKNRTGLNYKDKFQNTIECYLGDNCSLTEISLELPENFHDQESFFNTPILDICFHGSIVLIKDNCKLVLDKIDGFKLYTSNIPKNRFDHLSIFVYTTMKSTKSNSYNSTYTVMLEDGTVILEVENLICTSLTPVKDPLLIEIPTDMYYTPYLQSKDSQIQSPLEFKSIYQNNQDNDSLLIPNVVLETIKPLINEQMEFRILEFGGNNLSNSTLLLNSINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIKYSLNQIYQILTPNGNLIINEQQPNNENNENNEDSLKNLLVNCNFNSDIMMKSSSVSDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCNQDEQFQQQQQLINKFESHYNNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSITFEYVQINQKLYEFKSKCTHVLITYDSQSSNYLSSSILGAARYFDEIPTLQLFTFDFDKDSLINLDISVIDHLIDPKQNTLIEFFIKKNGKVYFERFKKGLKKNSFKSESYHQITNEQEILISKLDENLDYQLKSKDSILKPYDIEVEIKATGLNYKDYLVYSGLIKLKGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGIGQSTSSSHIIIDSMHACHKPSKITHVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEILKSNNHSSPIFVTVGSEEKKQYLINTYGNLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDSNFKCLNPEGRIVDLTITHLNPNEFIDNNKFKYNFGYHNIELYYCEKPTIKKLLQSISKSIENNTLNYLIPITEFSNSNIKKAIEYINERKHVGKIVISHDTDITNKLIENQPKIDYSLLKSNYKIKNLGKNVLVTGQTGLILDIINWIMKYNSTVENIIILSKSSMKWEMEFLINNNKTKIKFYYKRCDIGGDSDSINKTFDKLFTENPTITNIDSIFHFAVVQITRKVKDIDMKSLNISHDAKTIGAINLHNQSIKRDWKLSNFILASSILSKVGSLDQCGYVSACCVLDSFSKYRLSIGLPALSINIGAMGGSGMVARSELVETVLNGQGYNLTSTNQLLGTIDLLIQNPGQESNNLMVGNFNFPVFNNFKQKIHQKFDFIFNALDSNSENGDGSNIKNSTNIKDKFLNKVSEFLSIDSSKINNDIKLMNYGADSLITVQLKNWVDKEWSPNLITIHQIQSNSIGMVCQIINDNFEKKK", "length": 2380 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU5-1", "protein_name": "Probable polyketide synthase 24", "gene_name": "pks24", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQNKINKAEILQVDDKHVEENLVAIVGVGFRLPSGSIENERNNTPQTLWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGINPNEAPTIDPIQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGCTESDYHNINKNEVKSNVFSSLNHAISNRISYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDSYFFKAYSSLNILSKSNGRCKSFDASADGYVRSECIGVVVLKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPTGDPIEVEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNKFKNTSMVVNNFGATGSNCCLVLSQFNYNTINNNINNHNNNHNHNHNHNNIKINNYLIPFSANSVESLKKYQSLIIENKEYESQYSFEEFVKNQIYNKSTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKCSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGSGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGTGYIDNIFKLYPNQDLTINSIEFKVPFVLTDGIGQCLQTNVYQTGKSEYRAQFHLKDEMNNQWINTSNSNFHLNSNDNYHEEKQKLDIQDIKQTKCNLSSIPWDEFYSLMKTQLGANFYGIFSKVVECYIGDNCSLTEISLELPENFHDEQSFFNCPLIDACFHGTVILYIQKNCKIVTDKVEGLRYYASNIPKNRDEHSSIFIYSTLKSSPSDDLLSSSIVVMLEDGTVIIEVDNLVVKSLTPVKDPLLIETPSDFIYTPYLQSKDSQIQSPLEFKSIYQNNQVDDGLLIPNVVIETIKPLINRKMEFRILEFGGNNLSKSTLLLNEINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIEYSLNQIYQILTPNGYLIINEQQQQQQQQQQQQQQQQQQQQQLLNNENNKESLKNLLVNCNFNSDIMIKSSSISDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCYQDEQLQQQQLINKFENHYNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSVTFEYVQINQKLYELKSKCTHVLITCDSQSSNYLSSSVLGAARYFDEIPTLQLFTLDFDKDSLTNDLDLFKTIDYLINPKNNIQREFYIKNSGTVYFEMYKKELKNLKNSYKSESYHDLSKQQDQLVSKLDEHFEYQLNSKQIDLEPYEIEVKVKATGINYKDYLKYNEMIKVNEAGIGFDFSGVVSRVGIKSSKEFKVGDQVYGIAYETSSSHIIIDSLLACHKPSKITHVQAASIPAVYSTSLYCLYDVGNLRDEESVLIHSGSGGVGLSGLEILKSNNHSSPIFVTVGSEEKKQYLINTYGDLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDTNFKCLNPKGRIVDLTTTHLNPNEFIDNSRYRYNIGYNSIEILKVGKSTIKKLLQSISKSIENETLNALIPITEFSNSNIKKSIESIKERKHVGKIVISHDTDIIDKLIEKESMIDYSILKSDYKIKNLGKNVLVTGQTGLILEVLKWITKYNSTVENIIILSKSSLKWELEFLMNYNNNNNNNNNNNKIKYHFKKCDISNWNLINKTIDQVLKDNPTITNIDSIFHFAALQINKKLKDIDMNSLNVSHSAKTFGAVNLHNLSIKRDWKIINFILASSVVSVLGSFDQCSYVSACCVVDSLSQYRKSIGLPSFTINIGGVSDRGYLSRHKLVEAVLGGQGVELISPNQLLGTLDLQIQNPNMPTNAFVNNFNWPLFKSFKQKLHQKFDFILNPINVDNSISMENDTNQSSSSTNVKNKFLNKVSELLSIDPSKINTNIKMINYGADSLITVQLKNWVDKEWSPHLITIQQIQSNSIGMVYQIINDSLDKKKKEMDEKLLPITAKTTTTTKNDPNDKTEYKYIAGGDCCREFSIKFHYSSVVNFII", "length": 2471 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LI2-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "mcm2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQNNNNNNNNNNNNNNNNNNKRKTKTPSSVNHNNTKINEDKDLYNFIDKIRDKTDKSHLEDEYDEDDNTKDGKFNKVEDEIKNDIDSEEDDDDIIEDNEHLYDGDEDSENLSSEGEGDDLLDEDLQDQDEEEVLGDEDNHYEMEGLDNETYEDIDKDKKTEVDSILTKRDREEQKTRQATNRHQYRISSFLLDENDENMVDEDTENNKLLEKRKANLIKKRRETIRQQNDNIKKDYDGSVPSFKDGFVNSERYFEDGDGDDDDDDDDFDIGDNGQVVNLEEPDKDKCLREYVCMSGPRNEISKQFAKFLLEFKEKDGFNPIYQESIQKMCAANKESLMINFTHLCASTVFGVWVAEIPTEMIEIFDEVALKVVLRIYPNYRNIVKSIHVRITHLPICESLRDIRQSNLNKLTKVGGVITRRSNVYPQLKHVKYDCVKCKTTLGPFSLDGTFNDSKPPIGLCPQCQSKGPFVMNSEQTVYRDFQKVTLQESPGTVPPGRLPRTKDIILMDDLIDTVRPGEEVEITGIYKHNFDLKLNYSQGFPVFSTIIEANHINKKEDLLSSFILTDEDEREIRKLSKDSNIAQKIIQSIAPSIYGHEDIKTGLALALFGGTPKDVNNKHRIRGDINVLLIGDPGVAKSQFLKYVEKTAHRAVYTTGQGASAVGLTAAVRMDPLTREWTLEGGALVLADRGVCMIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLTARCSVIAAANPKRGKYDSGLNLLQNVELTEPILSRFDIICVVKDTIDSFKDRELARFVVASHINSHPDNQNNPENDYLNRATKQSPISQELLRKYIIYAKRIKPRITDIDKNKISQLYTDLRRESRAGGFAMTVRHVESIVRMAEAHAKMHLRDYVTDFDVNTSIRVMLDSFINAQKNSMYKNLRTKFAPYVIFQKDINQLLTQLLQTLARDFSNYHFARSGDIPDQINIPYDDFDTKARELGISDITSFFRSNEFTSNNQFTLKKDKSTIIYYRNK", "length": 1008 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LX5-1", "protein_name": "U1-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKITESNNNNNNNKKDNNKHWCKYCKIFIQDNISVKNHEEGWRHKNNVTRFVSTQNRDKKYQERDQKEAEREINRIKNTGARSFREKDLSRVLDEKKHQQQPQQQPQQPQQQQRIFNNNSNNNNNNNNNNNNNNNNNNNNNNNSNNNNNYHQPQYPTTTTTTTTTNTTASNKNCDNADSKFKEIQEQQRQLLSNNDYYNYYQDRQQLIYDYYQNEGNQPIPEPPLNTSLYGYTESPLLKSRLDSSTDTLSSSSSSTIISPSHQKKRKQDDTNSPIPAKISKDECVNNENKDKSNEKENELNNNNNNNKSGEGEEGEESDDNDDDEEESGSGSESESESSEVDQSESIIGQWQTVDPIESAFGSTRKDSDDEKDKKDKKNKKDNDENKRDEKDYSDVSDADSEEESVNITKRAMANHKKPITLTNVISPTIPSTSKNFESVLSFNKSGVFSLNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEPPQPTPQITLKFNKPLKQRNTRKTNIEDKQS", "length": 514 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54M95-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLISILFFLFGILFFLKNVESASDVVCSFGYQACGNNCYSPSSGQKCYPGGVVCSFGYEACGNNCYSPSSGQKCNPGGVICSFGYQACGNSCYSPSSGQKCYPGGIICSFGYEACGRSCYSPSSGQKCYPGGVICSFGYQACGNTCYNPSAGQRCFN", "length": 158 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54N59-1", "protein_name": "G domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDLDYAIIVLRHHLESNGRFFEISKDDVKNRVTIKNKLTQEERYIDFGEIQNFIQYDEFEYNLLANGFQENLSILKNSILPLTKAPDSCSSNRGKTIGNSSLLINKVNGLIDDDKDTIYLLLIGITGVGKSTFVNMVVNYIEYSNLKDALENATLEQIYTIASKIEIQDENKTHKFSLGDVEDYKIGSSVTQYSRQYRIKLPDGKTLCLIDAPGVGDPQGTLQDNKHFENILHEISSLKKLNAICILMRPDETRATVLFKYCLNQLLLHLHSSAKDNIFFCFTHTRGTMYKPGPTRAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEFDFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIKLMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPKWYSSLYWCDNINKMGTCKKCSNTGVLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQFQEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSEYKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVEIDLFSKMKNKTKQIIK", "length": 689 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ND5-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "mipp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MMVKIKNIIILFCIFGLLSNVSSLSSSSSSSQSSDNNGNLSPIQDYDLEFLSKHLTTKTPYWILTKNGDSNSQGDGSSGNSNSNSNSNSNSNSNSDSSNEPPEQCKLISIDFIARHGSRMPVLNSIEKLKEMTTSILEYKEQVNQGFNWIFNYSVPYPSDIAGNLILQGQYEHYNISKRLLKKYPLFFEPMKYKPQSYSITSTAISRTGISASAFSYGLLQGTGSLGVDGFQPVFIETASLDQDILLRFFATCNQYVDQLKNGTLINKDEQTKWNQMVFPNISNEISERLGLSDIWLPTSNVISDIFEACAYEISINNISDHWCSLLSKQNILDWEYSQDLSNYWLKSYGHEINYQIATPLLNDILSGFDIYINNNNNGSSSSSSSSSSNNGDNSGSNGSSGSGSSTSTSSNDNGSTNNNDNKVEPTSILRFGHAETIIPFISLLGLYKDEQKLFANSSTEQIENRKFRTSVVSPYASNIAMFLFDCGSAADGFKILVQHNELPVLVPGCDEIYCDYQQFKSIFKQGIDNFKWNSYCNINDDDSGSSGGDSGNGNGNDSHSKKSSYFLAIFIPITFLVGGTIGGIFTYFSYEKIMQVKNRKKLTQYGNDEFISSPKSKSFSFKPTKFDSRSPLIQ", "length": 635 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54NT2-1", "protein_name": "SH3 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKITTQFARTRQMLFTKTGHSEETIDVQYHYEKERTFSTEERLVKIQKNSKKLIELYKDLNKITTDIAQDACDLYDTQDPMWTPGSKLRDVATNNDKHLLDYTEQMAEPYTKPLSDYISQYKEARKRTEELTTRKVDMDRYKNEVGKLREKGAGSSSKAKLAPTEEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSPLPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVDKDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSELSFRAGDIITIHKSEGEWWEGELNGIYGFAPGSYLRMN", "length": 374 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54PW0-1", "protein_name": "Annexin I", "gene_name": "nxnB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEYKEKEINTSSPSSPSKTQISNIENDSISEKAQEPISEKVQDPISEKAQESISEKEHIESNNVSEIIDLIKSGDQHLNNNNNNNNNNNNNNNNNNNEEENQEINYNDNQLSNEEIVEDVKNSNINNNNTIEKGNSSQNNNKNNNNNYHTEKCDYCLICKCYDYGEITHNIVEDSEILKQSIRYSYVDDTSINSILAHRNYAEKEAIMKKFNDKYNKSLETELASHTHQKYRRTLISILTEPSIYDTLNIENSIKTKNSNTLLEILLTRTNEQKELIKRIYLVKYGKNIEHDIIAKFSNGANVNGNMMKQLLISMLNNDRDSNSNQSLDMNLINTDSNRLYQAGEHKKGTDHEVFIEILSKRSFSHLSELDRVYENSNPKGHSLRKAIELEFGVSKSIKQVKISLLDILLFSKEPSKYWAEQFNRALTSGSWGINEIDLTRLTITQQHQASKIKQAYISHYDNSLINEVSSKTSFRYKKIILSMLTV", "length": 487 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QB4-1", "protein_name": "Kinetochore protein Ndc80", "gene_name": "ndc80", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MHNNNLTYQQYQQQQLLIQQQQQQLLYQQQLLQQQQQQQQQQQQQKQYSHGRPSTLGLPSRKPPPMQPQPQPQIQAPIQLTFQQQQQLLQQQQYQFNNNLNTINNNNNNNITNRHSMVTPSTNLGGRSSLGPPSAMLTNNNNNNSNIRNTTFISNSGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNNNNNIHTQVQPKKSIAPSKSNTISSNTTTTTTAASSSSSSNPSITLRQETRPVNDSKFQSQCLLRLQQFLSQSEKGYPRAITKDNLMSEINGLMKFLCLHIDPHFKLPTEKPEEEIISFFKMMGYRSAGFTKRVFSQVGNAHTRGHLLGAIIWMVELIEYDQIIRQMDSHIEREILNGNTIDENGNLTTTTSATNTNEDGNFNLTTQIFSKHVFKSYEAFLKGDDGNHVDQFLEEKFNEVNELIVKECEESMERQKKIKQEIVNLTQYITNDDIDQLNFKLEQTNQEIIATHDLINDNELEDQKLDQEIDQNQTHFQELEIQQKEHQKKKQEFESRIQIQQSNSVDAKRINQETFELKEELDKVQREQSRHDQLKQEKSKEIKQSINEIEKLIQSYKEICCKASLVTNDNLIIEKYRIIFTHTLNNNNNNNNTNNSSILNISNNIINNNNNNNNNNNNNYEEGIISISDLKLVIKNLQELNLEISQNISKIKQDLLKTSNLNDIQKESISDKELELARIKQKHDKQKNILKQEKQDQTFDITQREENIEQLKSSNKKLIDDGVRELEKTIQLLESQREEHSRLKIDLKQSSEQMKLQYLKRIERFISHRQLIGSQIFDTLRQMEELSLTQKILFPPPPPPPQLSQQHQQLMQQQHQNNTIDIDE", "length": 855 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QD2-1", "protein_name": "Probable cytochrome P450 517A1", "gene_name": "cyp517A1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIINVFLFLIILFLVKDFVKKNKKIHTKSPSGPIAFPILGNVVQIRFWELFKIQEHELFGGYSKKYNGVVRAWFGERLFFFVSNYDVVKYFQKDENFHNRPSVLVPGWRYASSNGLGVMSSSDDKWKRAKSSVSQSLRVRTTKKLMEEKAIEFIDSLEKISNNNEIFYPKGHIQGYACSMLFKYMFNQDLSVESGMSRTIGNAVEHVFGNLSKLTAFDCFEIFSPLYDWFFTRRLKGCDIVRQIISSQNENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVILQLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKNDQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACPGRFVAIDKMFLGISNLLLKYKLKTQNGEKIDDSIQFSVSLKAKDYGIKLEKRI", "length": 483 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RM4-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKVILIYFIVIYLINISFSLKPYQQQQQLHNFNIIENNNNNNRNEKVIIAHPKIPPYWLIENEISNPNDLISFKILLKQNNLNKLNYLFEEISDPKSKIYGEFLSINEINELVKSSESDFNVVLEYLKSFNIGNIENGSEIKVFSDYILVETTIEKVSSMFNSKFSNYKNKNNGNTRNRLNGPAYLPKQLLNSIDFVTGLSEFFENNFKIENYLNNNNKNNGDSDSDSGSGSGSGSSNSYNGGLDDILITPKVLKSYYNVPNELIGKFENNSIGVIAFNDYFSMGALELFDEKFNITTTKDNLKIIGNDCLGKGCDQYESDLDIQYIRSMGENISTDFISFNDAQWILDYLHSVLLMEKPPLVQSISYGWAELLQCDVSNGCSTFGYDSKQYVDRTNSEFQKLALLGISVLVSSGDDGAPSMGGSSGNCPIDGTVYCPTGGCNHTKTMCPEFTIYNLNGGSDSGGSSDSYCFFPMGIASSGCTNILGDPSVLDSGMKIFSEKNKQCNLAIEYDRTNLPHVYSECECKDLVNVTFRNYHFTQYQFNENNGALFVAEYPSSSPFVTSVGATQFLSRDEKITTEVGCTILQGAKITTGGGFSSFQSQPKYQQYAISQFFNTSFNSLPPSFSYCPTNRGVPDISMVGHNYKIYSSDGNNKDFNQCPCKSLPVDGTSCSSPTLAGLIGLINDQLLLNGKTQLGFLNPLLYQMAIDEPRIFNDITGDSSNRCSRSYCCLYGWSTSSNTWDPVTGLGSIDFNLFLSYVLKLKGI", "length": 767 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RX1-1", "protein_name": "Translationally-controlled tumor protein homolog 2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLYKDLIGNSHDDLLTDRYEIKVGDVTFEVKTKMITKDLNVVVNNNSLGGSISTTVDNNNSITLSTNLEDEFENVEAAGTFQINNLVEQLRLVETSFDKKSYLAYMKLYIKDLINHIKQQPSNSDNEKIEHIQKGIQSFVKTMMDGENFKKYSFFTGSSMDANGLVALMYYKDDDPTTPTFVFIKYGLLQVDV", "length": 194 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S19-1", "protein_name": "PHD zinc finger-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNCIVCSKVGQYPLNLVKCYECKSYYHKFCLQSTKIPRGEWYCSSCEIERKNKKNKKRKLDGAGKKNKKNNKDDDDDNDDDDDEGENDEDDEDHQDEDSGEEEDEEEDEEEEDDDDEEEEEGNEKNKIKKRKRIPINQSPSIKKRTKDIDSEEEEEEEEEEEENDSEEERRIQKRKNKIKQQQQLKMKEKKQREKLRKRRRRTRSSRKDDNDQDDDDDDDDNNSNNSDDNDQDENKNKQKRKRRKDKKKDDDDDDDQEEEEEEEEEIVTGKRKRRSLNKVQPNQHLNNENEEDNEEEEEEEEEEEEEEETDSSEEFLENLVCSSCNTGKDEDKILLCDTDNCSRGYHMYCLRYPITSVPKGDWICDFCRFGDISADLHSADDDEDGAINSQKEIEKQKQKQKEKEKEREREREREKEKEKERERERERREKEKKDALRSSFSNIPIPKINNINGSNGSNSNNNNNSNNNGSGVNRQSPPKVISKKSPQQSPKPLKSPTSSSSSTTSSPPPLHQQSKVTSKISPNSQQSIPTINSNINKSPPSQSKNSPPLKPLTPDLKKQIPITNITTSSTTTTATTTTTTTTTANTSNVATTTTLLKPSSQKKPTILSDKKQLNTSGTNLPMNGKKKEDLESSASHSILDMIPPNNKLFNNSIQSAPISWDLSGSQHKLSTSSSSLPNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIKLQQQLQQQQQQLHQQLQQQQLQQQQQQLHQQLQQQKLKQKQIEEEQEKEREQKRLENEQKLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEFIDQKELEDKLLSQFDNQNLKSPLSLTSTTSSTLSHLPQSTFESSTILSNKTIKQKWKSRILFETDQICQCEIIQIYGMDFKVNPFQNNITSKTLELSFNQVSFDNLPKPIRDEFITKSSTPSTCLDIGAIDLPNSALLIFLPEIPNQSSLYHLIIHFIENRVAGFIDLSNDLSLYIYPYQTSIISLDLIGILIDKKSLSPPSLILNQQQKQQKQQQQEQEQQNQSFDIKNICYIGINHISMNKILTSQGKNYFSFSNFNELTLSSDIKNFDLVVVDNKMVNNQTINKEINNLMQLQPTTNNNNNNNDINNNHDTLLLVIKDVEFSKWLVSQKKFPNSLEIQKIFQQQILFKQSRCIFLLDNSIIIENESSYFVEFISSFGKFKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNDWTIKISSTIFDELLPFGHQSNVKKKIDEIKRGINQQLIVSYDFSPMVPKQSSDFLLLALRIAHSKKYKQVFLITSNKIIQNQSKRYSNLNLNCLSLEGGIDYIKNINNKFSLKI", "length": 1361 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S56-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDLFSHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVGECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54SW0-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "NQAKSSTIQQPTQTQQSNINNNTAKPRAAPPLKLVITNSNPSLKQKPQSQQTIPQQSVPQQSIPQQTIQQSVPQQQPNQSQQVNVNRTINPQQQQQQQQQQQQQQQQQNINRTAPLPQQSNYKPQPGVIYQQQQQTQYRVGTPLTINRSPMVGMVSKQPMSSSQQQSQSQQNIQRVPCQGKCCAGLAVKPLVPINSITAKPPPYSTMGPRGPISGGFVRTSPTGAIIGPSPQQQTMSRAMVNSMPIQPQIQIKPKPSPLNNGGIPITTTTTTTTNPLNKSSPSTLTQSSNTLASSNNNITTSNSLSSSTSSLPTTSTTPTTKPKSKPRSKSNSNSQTSSSTTSSSSTPSTPTTNSTKNKENTTPNKGDDSGTDNEKSSLSNSSKLLPTAYTMDQVLPFNPNQMFLGPEDKYIKSATRTYHKIPTNPSVMSNNRGAEIPSSLEYILDIPIIHDEPSSKNNPTWGRLILDALRRLVANKKTTRITERLKLDNMYKDMDSRSNQDKLDWKNGLVNEAQLNYLLSFLSNTIPFPDTPEKNKNKYLSSSDSQIINSNDQSNSLNSNNSSNNSTTNNNNSSTTTNSTNNIINNNNNNNTSSVPNSTNNSNNSSPEQQDVIDMELKLEPDNSMNFPIEINMDSLGSYIDDSFTFDNSSYDDTATISSDDKNLPITTVMPPTTSTTSTPQTITNTIPTTTPTIISPPTITTTTTTTKTTSPPTITTTTSPPTITTTTSPPTITTTTTTINSITPTTSTSSTINSNTTPMLDIVIDPVISLELLDENHQQQQNKEVKEENVHSKQQPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQEDFMIQVQTSDLETQTQIQQDKEEIQVKPIVDSKKSGNSPTQIQQQQQHQQQQHHHQHNTLTQGFEFGMMMDIMNSPSSTSSMKRKRDDVDQPINQINNSSMVVQQNNDFFSDFNTIEAPFSSSHHSSQLSFQTPFSPDIVIDSDFQNKKRIVS", "length": 981 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54T36-1", "protein_name": "Probable polyketide synthase 19", "gene_name": "pks19", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFGNKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSITMGFQSIQNGTSNLSIVGGASLLLDPYVSKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSTTSTPSKPLLIGSLKSNIGHCEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNINEKPVSMVINNFGVTGSNCCLILSQFIEHSISLNGNNPSYPIESQQQIFLIPFSANSVKSLKNYEDLIINDNNLSTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTSNDKSSNITIKRNQPLIVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLDLKENNIFCAFLGSLSSFHTSSQNSTKNEILPLEIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDINFKCQFNHNDDDVNSIRNNSTIILPNYQFDEQYYWKVDINFEQYRLNGPNVFNNLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNKDIVINNLEFLAPFVLKENVKHILQTNVYQLGNTDYRVTFNIKDNKANQWVQTCTGNFQLISLKDNNNNNNNNHSSKYNINQLLSECNFTTLSKQEVYKYSKLRSGITHLGTFQGIEEFHFGNDLTIARIQINYENFDINGKPVYQTFDKSFFNIALLDNCIQAITGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLEADSYKSSVLVLLEDGTKLLEIEHISFRSTLPLIDELLLNNPTNELFTNNLQCKDSLVNILSIDNNETSSSSGSSNTVTEIIKQTIKPIINEKIVFRILQSFSDSELSKQIIEALNQIFDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDETIIKPIFNILSSNGLLLLIIEDDIGIRFNINNLIGVGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKHSKYTNEFKKLISNNHTNRKQTTISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGASRYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNEIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISDENKNCEFKVGDNVFGVSHDATASHVITDVLYVSHKPNNISHIEAASLPIIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIEFMHINKRVVSRLLKSISNALNENKVKLIPITTFQIENVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLENPNIDNIDSIFHYAFTQVTKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCTYVSANLVLDSLSRYRKSIGLPSTCTNWGTIKSSGFVSRNDSVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKYSNLIVSKFNYDSIKKFASETSTFQRLDFILNSIKEKDNDNNGGENISISESIQMKFLNKISELLSIEQSKINTDIRLGEYGADSLTSVQLKNFIDKENKSNVITLQQLQNNTIGVNIQIILEQIKKLDSNETKGKSKKIIKKDSAPSLEYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKVKVIVGNLASPLLGLSKLDFGFVSNQINLIINSGADINLASNYEESKVVNIGGLIELIKLSTTGDYQKPIVGFSSISVFFESPNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSIKSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKKTKELLQSMNSYEGGMVNEKIIQNHINYIFKN", "length": 2778 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TD0-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "V4-7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYELVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLIDNGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAKVDLVLGLSDFIEDNKMSESMRATKKQVQGSTVSITPAVIKQYYGIPTGQIGVESENFQSIAAFSDFYSSGALQFFDQKFGIDSSTVRVKNVGQNCIAQNCDQMESDLDVQYMTAIGNNITTLFLSSGNGEWIIDWATAIQQYNPIPKIASISYGWAEVEQCEITNSCSTLGIDSVVYVARSNVELQKVGLRGVSVFVSSGDDGAPSFGAASGNCPIDGTKQYCPLGGCNHKSSQCPMITIMESNGTQCFFPMGSESNTCQSMLQNQNIVNGINEFVSSNSKCQVALEQDTQQNYHIYSSCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKPEIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLVGHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN", "length": 702 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TX3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYFKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAIPKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHRWSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAILKNTNQDLHKYKFNKAWQTPAAPNPLPI", "length": 1097 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54U20-1", "protein_name": "Peptidase S54 rhomboid domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIYGDTREFRNIHFHLNNIRIVGAIFGQDGFIHKKIPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIVYNMITFLDLAKLERLTFGTLKYFYLLFLFGIITNLICLFIYFIGRNNVCHLGFSGVLFALIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHFSGIVVGILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPIIKFGGSRRSYNTDRKSLDGLFFELKNLFNPQQQQQRQQQRQQQQPQSPQPQQPQQPQQQPQQQPQQQPQQHQRDNFRNDNNDNSNNYDEYDFSK", "length": 343 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VC1-1", "protein_name": "ABC transporter C family member 15", "gene_name": "abcC15", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKKIKNIINKIINFFSTIYILCKIYLYYNIKNRYEAYNILSVYGDDDFFNKPCPEDSSNWKDKLTFKWVERIIFVGFFRAPLNLNDISDLPSSLKVENTAPLLKDIIFNDSTIPLIKHIYSKFLPRNYIATGLFVFVSVFSFITPLILKNFLSYVEKIDEQKHIYIGIIQCFLLFLSSFINMASQQYSYWFGFKTSLEVKGALETIIFEKMTKLSNLSKKNYNIGSMLNLMSVDTDFFQYFFCHYYIEIFLFPIQILSLLGFLIYVIGIAGFVGFLVMLITIPLSSFLGTQISKNLSTSMGYADTRISLTGELINGIKFLKQYAWEKMFCERIEEQRKLQLKYLYIRIIYWVLVQIVTQASSGLVLVSTFTTYTLLGYEVSLEIAFTSITILQNLRRPIESLPDCLHKFISLIASAKRIETFLQSSELQNQPFIHNQSGLNDILIRNINFNWNEHNLKLKNNKNNQNNNQNKRSIILSSGEQFEITNDFTFDGIDIQDDNYDYEKEYKINYNNNEEEENFMTDCLLKIKPLIKDRRLQQQQADYQDLLSINLPPPPSENVDFKAPKGLLTIISGGVRSGKTSLASGLLGEICKAVDKSSPDSVNSILSTIQQPFLQSTSFRENILFGKPMNMERYIKVIEACCLAPDLLAMGEGKDLTEIGERGINLSNGLKHRIQLARALYADSDCYILDEILSSVDPEIANYIFQHCIKGMMKGKTVILVTHQIQFISSADHVVVVDNGVLIQGTYLELLRMGIDFEMILKEKENRIEKQIVQLQEDEDYYEEVEILDFTMNNNNNNNNNNNNNNSNFNGNNKLKRSSISLPKGISIESIISKDFDQTTIEKAKLFVQEDRNKGDPGWIIYKKYIRMGSSISFFIFTCIIYLTSQIILLLSDYWLQSWASHDRLNVSEPTDVHYLLIYLAYIGGFVFTLGVRYLLIAKITFGSAETLHRSLLKSIIRAPLTFFEQNPVGRILNRFGKDISDIDILLLDCFSDVLYCGACLVTSIGIIIYISPYIAIPFVILIAINYIFQLFYNYSVLELKRIQSISRSPVYSLLSEVYNGLTTIRSFGQQERFFNMMKDNININLRVFFYNFAVSRWIGIRVEFLSAIVVLMSALFSIFNDNPGLSALGVTTALGITFNLNWFMRQFGELESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLVQGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAHNIDTILDSDKIAIIDEGELIEFDTPLNLIKDSTSRFSKLIKLNNNQKNKLN", "length": 1436 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VG9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSIIILSFILSIISFSNGTIVKCTSASCSSLNNNCVNHYCNPRAGCYGIDKCVRIDACHIVSCDLNNGSCINTKANCDDGDPCTDDFCHNGYGCFSLPNNKHPSVICQKNCNDNNPCTDDFCDFTNTCQHTLKNCEDNDFCTIDSCGPNGCVHTNISCDDNDPCTSDFCSIMYGCYHEQIECSIKVPCSTDIECNRYNLCETYTCDLISNICKYSTKFCNGFPCINNECMTGVIYN", "length": 237 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WA9-1", "protein_name": "Short-chain dehydrogenase/reductase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKKNIFFITGCSGIGFGGLMVKKLLSRGDYVAATSRNKNKLIQDIGSNENDQFLPIEMNLADESNVKEAIEKCIEKFGRIDILISNAAMGILAPLEETTDKDARTLFDINFFGPLNLIRNSLPYLRNNQFLKNNNDNNNSKLNGPRIIIIDSICGYSSLFNGCSIYCSSKFALHAISETMSIELKPFNIHCCNIAPGYFQTSFLSSCLIPDTRIAEYKDTHSFLDEIVKLNGSRFLGDLSKAVDVIIEISLSYSPPNHVLVGSDAFELFDLKYKKLTNDILINKEICSNTDKN", "length": 295 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WC3-1", "protein_name": "Cln5-like protein 2", "gene_name": "cln5lb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKLIFIIICLGIVDKTISSDFKSYNDGIYSFTYDNICSFKNSIRDQDVYELYYVQAPLLYATYGNLLEKINAYHSGIVLYNKNNGPNITIDYYAIPSFEATLFPKSIIKDSQGNYNITWDTHGLIEVTNYINETYWNKRQLIMYDLSGIQIKQYLSWAPIYNKTHTFYNLFNIESDLSISNSSKIYKNSSTCDDFVWASFDVLYKLGGTIASVQSDPQRDDIKLFISSGEPKIVDYNDSIKRNQIASFFNELKDFANLGKNKTALEIFNELITFFNGYFYCYIDGEYYEMKLSKQNPISFTYLPSPIPIGKRNFNEIKKLGFCK", "length": 325 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WW7-1", "protein_name": "Probable serine/threonine-protein kinase DDB_G0279405", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGCIFTKPSPEQQKFDGEDYECENKKNLNLISYIRNLLFGNNSHQQLYNEIIPTTTSTTSTTTNSVYQNIGLDGYNNNNNNNNNNNNNNNIMNNYGYDDYGYSYEEDEDYYDEMPIPTIVAQPQPQPQPQPQPQPQPQQPIRIVSQNQQIPTTPPQQISQFNITGNKSPSSIGSRHRSKPKETLRAHKKRHKDGHKMVNEYVFVRKLGKGTFGKVKLAYHHDTHHLYAIKIFNKIRLKKQTMGIGRPNAFDDVLKEIAIMKKMNHINVVKLYEVINDPQEEYIYIVMEYIEGGSIMSANETSEDLARKYFRDIVFGLEYLHEQKVIHKDLKPENLLVNSEGVVKITDFGVSHIFDDDDVVRCSRGSPAFLAPELCRNESQPISGKGVDVWALGVSLYCLIFARTPFISKTNSLLDIYDQIVNHEPTYPREISNDLMDLFKRLLDKNPLTRIQIAEIKSHKWTTISGTWPMNELDHLILSVTDQEMIDAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQNQNQNQNQNQNQNQNQNHNQNQNQNQNQNNNNNSLIEKSNISIPASSSSISNNDSCYENRNVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDENESQISRESANDYYLPFKTNKYLNNKSIV", "length": 695 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WX7-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MARTDNVQLPLENTSIEFEEEIIDSQNDISQQKNYQDFLKNIPTDLNERKEYISSLKKLIKLEKRNHQQIQGEQPNQQEGLNSDRPPPNHHGDHHHSLPPPNHHGDHHHHSQPPPNHHGDHHHHSPPPPHHHGGHHHCPPPHHGGHHHCPPPPPHHHGGHHHHCPPPPHHHGGHHHHCPPPPPPHHHSHHHHCPPPPPPHHHGGHHHHTPPHPPPHHHGGHHHHCPPSPHHHGGHHHHSPPPPPPHHHGGHHHHCPPPPHDGNEYLPQSQTNIEQCICRLNRKKELLIAKIQSIDSIIYNLECLNKQNYQNNYLPSIQLQPTQQPQQPQQTSIKPQQMCQQFFIPQTPNFPQMNNSAPLMYVSQIPVQQSFNNN", "length": 374 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54Y59-1", "protein_name": "Small GTPase", "gene_name": "rsmH", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNIFLSKSKDVYRVTSHKKEVKICVLGDANVGKTNFINQFTKSSFNEEYTPTIESRQNKLYKFNRKQFQIQIYDTAGSKELNLFVSDSISQCEGFIIVFSLNDRNSILKIQHYKTLIKNIFKDVEMPIVLVGTKMDLKKEITISKNECKITSVNNNIPNLFYTSAKNKESIIPVFKKLVDLIISKEKKVKKETESNNIKINNQNKIKKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHVFKTRSNSTLRMKKYLKLF", "length": 272 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YJ4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKVYQDEEFSFFEIGGKKIADLYVRDIITEIRKRGKEITGLGLKSKYELLCILVNRMKEENPSLNIPPKKRVLDFGSLSSTTSNGILQDSNKFFKKDNTHQHQQQQQQQQQQQQQQQQQQQQQQQQHSNNSDDDDDTHNYNDDSDESDDEYIITEEEEIELHKNLNLGDDENLLTLEIKLLESQLENKKFRKSLLLKDKKIKHLENIIQQQQQQLLEQQHQQQQQQQQQQQQQQQQQQRQEEEQQKEQQQKEEQEQEQSSLKNNLKFKDGANLFSIESISNLYNKILNEFNFKKIITEFGDSSLKIHEEFVKFIILKSINLNHNNNKNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNNLPNGDVNKNNNNNGEIIELVPPPKIDEFWKLMVLDTVGYQQFSNILGAKVNYDTDINPTRKGYQRLKDMKNLYFPPPPSTTELTTDEIWPNHYLLPIQPSPQKQHIQKQQLPSSSSSSSSSSSSSSSSQQHQQHQPQHKQQHQLQQIQEQQPQQQQHQQQQHQQPLQQQIQQQQQQQQQHQPQQQHQPQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQKKQQQQHQQQKNKENNKENNKENNKQNNKENNKLNDNNLNIEVHEDEGNRIINFLISPDTPLRNLFVAYAKEIGENFNSFKFYFGNELLCQNETPSQLLMRNGTKIQAFYLNKKEIKK", "length": 702 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YV1-1", "protein_name": "Rho GTPase-activating protein gacII", "gene_name": "gacII", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVRKLFNTSHKKELILDVDTTIVKIGTPKNVVLLTKWLDANGAIKEEGVFRVNGNTTTMEQIKKNFSQGKDDLTKYTSADIHSMAGCLKFILRELPEPIFTWDFYPIFIKIQCLQDESRKLFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQDQNKMTPKNLATVFAPNVLRPKKEEDNFQLMNNQDSIGVIETLIEEFQYISNIQKNTLNSQEIKVKSVLPFDETTNAITQQSLVEDYLIAKANTPQESSSFKKNLPFKKGDIIKLLYIKNDGNFIGEINGITGNLSQTYVDIIDISELAEAFTLTPPPIPTLPIASTILHTPPTSSSSSSSSSSSSILLTDNQPKLCSSTPRINNSPSSFSPSLSSTTPQLLVQQSPRQSPRQIPSISLIVEPNNTNQPSFGHGTLQRTSTGYFSSKPLSISQPINMSKPTNMSPPTHHAMSMHNLPPSNTTRENHLPPLPTKPPPLTIPSSSSLPTTPIKQQPQQPIQQPLTPQNHHHHHHHNNLSSSVNTANTGNCANILSPNSDRYLSSRSQSSVHLSGSSSSSSSSSSSSSSSSSSSSSTSNRKFDFSLKSKSSKNSPSKNLPPQPTTTSTLTPPPPPTITTTTTTTTTTTTTTIATTPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTITSTNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSRNTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTTHYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN", "length": 817 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA1-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSGSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA6-1", "protein_name": "Alpha/beta hydrolase fold-1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKINQTPKKHKIIEPNRKGYSIVGKNTGKPNKIYFETFGNGPKKILFITGFLSSSKGWCKQIDYFTNKKDQYEICVFDNRGIGKSNIDSKYSYNFSTKSMAMDAIDLLEDTLKWDKVHICGLSMGGMASIHLSSIIPEKVQSLVIACVPNGYFLPFFSMGVFNYIRAFFFTFNEKKKARIFQSLMYSDNYLDEKTNGSDETRSEQMFKKNSTGFKDDGPSFLTILGHQIGYITNRFSKKSLEVIKKYSIPTIVINSKKDSLVTIDITKKQIVNPLKPLNFHVIEGGHLSQLENPTFFNKLVENHVDKHSNWDHSTFFQVEKQQFQRQSFMTQNILYSKNYLSSNTLSSSFLNCNTLRSFFNKIKV", "length": 366 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZT3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551H6-1", "protein_name": "t-SNARE coiled-coil homology domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATRDITSSYILSRTECKNRAKIINSAININIKKSGSGYKRLEEENYQDIDIDNNNNNNNINNNNINNNDNDNDTTNNIKNSNNNNDIQLNILDTEINIEQLNSLPPWILKLNDIDENIKKIISLIEKFKKYLKEDIDKILAEDIEMESRIDCERSIELLTMETIRLFHKTFDMIKYLNKSNNSSQGENKMKKNTQRMKSAKLKALLITFKHIQRSYLALLKKVSSLQRSLSSSFLYRSGEYDVNNDNEDYGENSSISNSHYLQHHHNNNHHHEDDHDHEEDHEEIMDELNEMATTLIERQRVSQLIKETSHLIQDVGSMCVKKDSIFDRIDYNLAEGEELEFNGTILICDGITNGYERPENEKRKKLLLIFAVLIIVILFIFILKYVIEI", "length": 391 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551V5-1", "protein_name": "EGF-like domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKYLFRFFIFLFCITRINSQTGCFFRETGADYNIDSVFSVFYVDNLFNIFGMTFYMKTCTYVTCDPWRQTMICGNYNSTTFQLGPYQSQKVTLNKNGISIEYLSDKTPPNHPCPTITTTVKFICDKSVLSVPKSDYDYVGTCGVQIKLFAIDYCQTCSKCIASHGSCNSTSGWCTCDSYTMGLNCDQLKASISSVVAPTIDGGSVIISGDFSSIYSLGPSLVITIGSLVCSQVSFAASTTQISCTIGAGQGYQNLTISDGSGSTLQYKQFYYHYPCQEDCTPYGTCNDVIGKCTCNYKYSIGADCKTLNLQLTSVKPTLLDGGQAYLVGDFSNVTGLTLSVKIGIKECTDVNFNETTLQCTIGSGEGIKDIIITSDLLTYSKIGAYEYQYYTCPLGCLHGTCNKYNGLCVCNNGTYGDQCQYIECPLDCSTPNGVCDKDTGICDCDDKYSGEGCDFIKCPLDCSTPNGVCDGKTGICNCDEKHSGDSCQFLQCPLNCSNPNGICNRNTGICSCDSKYSGEGCDFIKCPTDCSTPNGTCDGKTGTCKCNNPYTGENCDEIAKCKQECSLKHGTCDSHTLDCICDTQTKGLSCEESRLLIESADPTSLDGGTTTITGYFGTTTSLLSIKIGDSQCTNIKVESDTKLKCDIGPGEGTHNVTVTDDDLSFTGVGMFQYVGQINKISKISGGAIAGIAAGCVVGVSVLGAGGYYQYRKNKKIELFMS", "length": 722 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q554Y8-1", "protein_name": "ADP-ribosylation factor-related", "gene_name": "arrB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGMGFSFIEKKDFKRFLILGIDNSGKKKIMYRLKFNKDIPTRPEKGFFVETFERRFKYNNEDVCGQNMIRPLWPNYYTDETNGLIFVVDSSDQERIEEVRLEIKKLDENIKIFKNHPFLIFANKQDLKNSLSIEQLIDKLELNKLSLNRKWHIQSSNAITGDGLEFGLNWLFSSSHNFT", "length": 179 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555E8-1", "protein_name": "Putative fatty acid elongase DDB_G0274669", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METVQSIITEWTDPKSWEKLVQHSFKDSNWKELIDPVNYKFNFGVTPFSQFQIIPIVLVIYLVTIFSIKFLMKNRKPFSLKFISILHNAILCIWSLIMCVGVLYEIIKRVSNEGPLFTVCEDPNGGFDKGVTYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCKTVWWKKYITMIQILQFVCLGIAGVLHVYTINTIGCFTHYPAFAAAYSINFSFLFLFSKFFVKSYTPKNSNSNTNIKSKKID", "length": 251 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555Q5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRSIRIKKINFHIKQGEEQLKQELNNYCEETSLKYISARIKKRHNDFTINAVKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDAPSHYEMLENWTVTRDSTWDNLENEFTTQEILEVIKQLNPHKSPGPDGIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPILTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLTKSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSDHREKFQSFADDSASMVPDSQQLELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKIPEILNTIRSSLVLWKTTDSTIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNTKMLVDFKITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKAIDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPKILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI", "length": 655 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556H5-1", "protein_name": "Cofilin-3", "gene_name": "cofD-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTPKPTIAKISPECQTHFQDIKFRNKYQGILLKVNEESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRYKSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDRITPKTA", "length": 138 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556J5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWNHNLCHAINLDRQFDHINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNSYDYSFSVHSSQQYSRHYPNSCNNEQTKPKDYYDHASRSQHDYHANGSNNGNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNNNNCDSNYNSNNNNSNNISIANIKYQQDQHYQHSDTYTSHQYNSFNDNNNNNNNNNNNNNNNNNINNDNDNNGYNQYDESEEDEEEQDDYDEFDIQDSASSYNDNCGVLNSNTYIYDYQSPQQPLYSNEYQNNNHQPQQTDSYNYNNTNNDNNSYNINNNNNNNSYNNNNNYNNSNNNNNIGNIDSNTNNNNYNYNYSNNGDVYNGYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNMNNMNNMNNNIITSNREQFYSNNNHNNINQYQYQSQQQQTQQQQQQTQQQQQQTQQQQQTQQQQTQQQQQYLTQYYQQELYSQSYKCRPYYQNSFVISKC", "length": 480 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556P1-1", "protein_name": "CWH43-like N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFFISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICGVCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLTTSVFIGYIILQFFIDNLAPILKIISALSIFFYLISFFYEFSKITINFQINTISQIEHQKEYNENSALLISQ", "length": 251 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556R5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLINAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKPTLQPSTICADTGVYSESNFTKTIQR", "length": 861 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556X2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557C9-1", "protein_name": "Homeobox protein 5", "gene_name": "hbx5-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METIVNNQNNGQQNTVPTQSFSSSVYMNYDFFDSQQLQQPQHQPQHYQQQDSFVSPNLDNNNPQIHVQSNNYNQNGFVGYNNSNNNNNNNQHMNNQYSNSFHNNNSSGFMAFQNNSSNFNNQNNNNSNNNNNNNNINSYDYNNSNNNNYNNNNNTHSNNSNNNNNNNNSNYWNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNHHHHHHQQQSQPTSPYNNPIQHNPNDMKFNGQHNPFNGNQMVMDNNNNNNNNNNSNVFNSNSNSNVFNSNSGSFLQINNNNGSFSSYNNNNNNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNQFSQSYDSTLGNNRFSSMMGQPIQQQQSPPQQQQQQSFIQSSPQAIPASNCNGNGSTSSSTSPLSPTLIGSAPGTPTSMLATTLFGFNLSSSPTSSPSSPVKKGKSQSALALSSSGGSGGSSGRKKPQKHDSMSSITNTNLKSTQASTLKESKRSNSSPNLKKQMQLQQLQQQQKLNENGTLIPPLPFASISENITNNNNNNNNNNNNNNNNNNNNNITNNPLSGSMEFPNSNNINQSSDSINGEFNIGQPESPKMYNSSPSPPPNATSTTKGGKKSKKSLHISTTQQSPSLNGSTGGSMLTPTMSGLSLSGGGSGGGFSPLISPTGTTSNKDLQSSPSPSPLLKSMSMGKLDLQDSIDSMSSPLSPNSSLSSSNGLLPPPPNSNNMNSSGGIPTPSTPTSPPPLTHHINIFSNLEFVKQLKDHLLPNDFKPEEHALERNLLRFQQFVKTLAEPLQRDVVTSMFELSVDAQLQYGSNLDNDNLSALMLFRRKILNFNLFRMMMLNDPNSFIPLPSPFPIQTTTISSNGTIVNPTNVNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTSANTVQSGTTSNSNLVFQQTSNSNTLSPSQQQQQQTQQQQSINGSSTGSLSDAQYQDLGIHLDTSSANSGCGINVSIGSSIGGGGGGSSLNGSNLNGSSSISGSISGGSSNGGGQFIMSPQFSLDGAYQQQQPSSYNINNEMELAEKDEDEIFNNNNKDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSSINSNINNVNNCNINNNSNSNNGSINSPRPSTPTTLNSSGKRSKKIYRGDSFGAGNDISTGLMASSDQIIPPPQQQQHQQLVNNNNNNMNNSENNILLADSNKGLSVSLGSLPTNTPSSMEIEQQQQQQQQQQQQQQQQHLNQQQILHQQLHHHLSSSLGGAQFTNIQQQQQQQSGNIFYNSPYNSSQVYMNPYGTSITNTSLAGPSTTSSAMQHMITNMTSSNIIVNNQNNNNNDQNNNNNNNNNNNSTTNSNVNNNNNTTNTPSSPPQPNNCTPTQTSIITSNGVVVPSLQMRGTITNPPPVLPTPDTLVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQETPHTPTSNSISSPRSSPVHQQSPSNTNTTTTSTTTIRHSAVTQLSFAGLHNQQVSPISPRSPRSPHGTSGDYNDGSQSPSSRRKNRFTDFQIKRMNDCFENLDKNNNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPTNPLTSSTNNGNNSNLALQHLQQQHLQQVQQQQQQLLQLQQQQQQQQQQLHQQSANTTPQLNSMNPNSINYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNITTINE", "length": 1723 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557D0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTGSNNLNSLNNNNNNKISLQETIQDIIKCSICLNSPKNPRFCPRCSALFCLECIDRWIISNPTCPACRDTLTSDNLNSNLIVSNILNELVKSEQEEYTSSDICNYHGYERLYYCSTCQEPICSDCALFKHKDHKIEKLSINFNKNLEILKIEEEALKKRQEELIELNSFLELDAETLLKNKSQIEKEISKVVITMKARLKYDFERRYNTILESQEKINNELTHLDFIYNDLLNHYKKSPSSFVLTSQQFIGVLQSVHKNSIMDIYTPINTDLTSELIPPFENRLLKFENFTTGDCLFSSRIAFYGMTWEIKCGIEEDNCFLNLKVLECNSDGKYFYMFTIVNQKTNVNKLIEFDLPFQAGETFYIPNFSSKQTLIDEGFILPENDILLLQFSFRPQNYFCYSNDLKRYIDILEYRHRGYFGEEDEDDGTIETTVTKLPNDKSTILGSDNYNDNYNDDGIGDLDEDEEEEEDDEDDDDNLDDHLQYDNDDDEDEEEDDEEQNEEDNDEEGTNIPTSEYEDLDTSSASVISNINRRDRFKNNNINNNNQFVNSNNNNNKYNTTNSNNSIVGSSRYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYILNRSYSTNKIYNFYQDEEEEEEDDDSNIDDQDEDEEEEDSEEESSLSSSDLQDLDSSGDQSSLEFSFSKYTNNYYSNNNNNYNSGGGGGVGGAGDNNKIECIRRDFNNLLKRINFTNSQLTNLKPGVPKDGDLLNDDENDKKCNIPLNEDEEEDEDEEDDVNKNKTTSTTTTTTTATTTNEVVTINPNTISNNSQDEEEVKSDIVKLLENGIANMLNNSNSSNRSSNNLKQQQQQQQQLQKDDQKQKDEQQNKSNTGCDIDQLNILSKLSIKESCDSIKNNDNDSLGNSTNNNNNNNLNNNNNNNNNNNNNNNNNNNNNNSNNNNLQSFLQSNENTENETDFNDNNTNPETNTETENEYLTSSNMNLDGGESEFDSNKSYEGSSTDENFNSDEDYQDEDNFNQDATGSESANNDDYLDDNEREGSDSIENYDEDIEKVLTSHNIITTPSIPPSQQPQPQLQTQPQTQPQSQPQSQPQLQPQSQPQPQTQPQLQPQLQPQLQPQLQPQLQPQLQPQLQPQTQPQQQKKYDDLSENQIQTENRNKKIKEEINNKTNNDNNNELGKSSKSNTSSSSSSSSSSSSSYSESESSESDSNNEYDNEDEDDIVNQVSNFNFNFNDASNFKNFSFRPKFPSDENDNDDNDDDYEINIDLKNIQKISPILRAIENGESNINHYQSPVSLSSSSSVSSFSGSGNSVPITATTTTTTTTTTTTTTTTDDDSGINMPISPLSASPPSPPPQNEPQINNETNDNDVKLPQI", "length": 1364 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559A9-1", "protein_name": "Probable polyketide synthase 13", "gene_name": "pks13", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENFKYRNNENDVAIIGIGFRLPGCKNFTPNELWNNLKNGFNGVVELSNRWSDNFYTMGKVSSAYAGLLPFDELKSFDPLFFGINPTEVPTIDPQQRILLKCTWEAFEDAGIDPIKIRGSNTSVFIGTSTNDYQRIIREKDQTITNAFGTSLHATSNRISYCFDFRGPSMTLDTACSSSLNCVKLGYQSIRDGTSNLSIAGGVNLIIDPYFTASISDLNILSKTGSCKTFDASADGFARAEGSGIIVMKNLKQAMIDGDKIYCVIKGASSNVDGGGLQDKSNFYAPSSLSQCNNIKMALKSTNGTVEPKDISYFECHGTGTPTGDPIETRGISMVFNDESRSKENPLLIGSIKSNIGHLEAGSGIASLIKCCLMFKNKCFAPNINFKVPNPKIKFEEWNLKVVTEPIQFTKSNTCIGLSNFGVTGSNCCLILSQFNNNNNDNQIVGNNNNIKSNKEYLIPFSSNSVKSLENYQQLLIKNGENEFKFLEFIKHQIFTKPTSLYQRSVVIASSWDQFNNAKIMKTSNSKSSNISIERNNPITVFVFCGQGSQYDRMGLELYNNDFIFKESMDLLDNKLSKYYGYSVLEKLRNCDSKSIQHPMIAQPVMCMFNISLFELYKHWGIEVSFIIGHSLGEIPAAYCSGMINIDTLCYLIYHRSIAQTKTHTNGRMLSINISADEYFSQYSKQYPDIEIACFNSPTSIVIAGNEQKLNEISEILKEKGIFSAMLASLSSFHTSSQNKVKEDIVNKQFDSKQSEIPIFSTVTTNLFDSVTSPFNSSYVFNNIVSPVKFSQTISNLYKHIESNQLGNDIVFIELAPHPTLQFYLKQMIPKPTNDDNSIEFKVSVYSALNKKNNDIEEIQRTISQLYCDNGYNVNFKCQFQHDDTHGSINSNINQLSNISLPHYQWDDEKYWKEDPSISKLIVNGPQTDNLGYLNENSPNSKSYETFIDIKRPPFQYLKGHMVKGKYYFPGCGYIDNLLKIYKSQDLTINQMGFKSPLIFIEGVNQALQTNIFKKSTSNTTTNNNDEFRVEYHFNDQKTNRWILSSFGDFQLSNHSSNSDNLEKINIKQLIQNQCNLTKLSRDELYSHIKSKTGLTYNGVFQGVNKCYLGENCSLSEVSLELKREPSSFFNTAVLDTCLHGMLCLLEEQSQLVFDRIEGFKYHSSNVPTSEEEMKIHSNIYVYSTINPSRIGDSYSASIVIMMEDGTVLIEIENAVCTSLTPIKESISVKYPTNQLFSMYLQSKDSPIPSPLNFKSLYNQNQQQLKIDKQFTDWMQKCEKFISNQFFKNIEKRNPEINLEILNSKTIIELKSKYCQNLKNERLFQFVFETIKQLGVNAYDDDDDLTIDSSEDRKSIYEILIKSTKVIPKLLFPLEDEDLTIDSPQSLFENGLLDRFYNNPNLMTNQCQLIAQIIKESLKPLLNKKMVFRILEMGGGTCSLSVVVLNLINQLLLENPSFEIDIEYTWSDISPSFISAAKEKLSHIDKRINILYRSIDIEQPFIEKQDLSPSYYDFVIMSNVLHVVKKLSPSLDEIHKILTPNGHLLFVEIPYKELISDSIFGAFNQWWAFEDTDIRKDRCSIPPNQWIQVLSNHNYKDTIVSDNKECTWCCFVIHSQKPSLLELSKKIECNQYDNIIVFGNENSQDNFTKSIKLSYNNNIIKWVSNIVEIKKFIKLNIITNNSIIYFTKGIEELTIDNFKLINFQYIQINQLLLKYESKCKNVLVTRDCDGSNYLASSLIGAARYFDEYRQLELFTLDFDNDTIQSCDECSSSSCSNLIKLIEPLIDPKINIQREFLIRNNRVYFERAKLETNLKKSFKSESFENSNKLISTLNFNLDYQLQSKPFKQLLQNEIEVEIKATGINYRDYLVFTGSLPIEKTNHNGISNQPEFGVDFSGIVTKVGGGGGNGEFKVGDRVYGIGHNTTSSHITIDSRYASLIPNSLDYIEASSITSSYILSLYGIFDIGNLDIQDNESILIHSGTGGIGLSALNSLRWKGHKSHLFVTVSSKEKEQYLRDNYGSFITGIYSNKDKNYPKLIKEKLNQLGSNKQGVDLILSSLPNGDDNLNFKCLAKNGRIIDLSNNIDLFNISKSKIKKLLNTINDGFESGELQVIPIIEFSNSNIRDAIEFINERQHIGKIVISHDDSNLLIDLINKHSNQPNYSILKSDYQISQSNLGKNILITGQSGIVLEILKWIIKFSNSIENVIILSKSLMKWELELLIGKTMKKANNKIKFHFKSVDVSDSIQVENSINQILNDNPNIVNIDSIFHFAFTQITKKVEEIDMESLNVSHNAKTIGAINLHNQSINRNWRLNNFVMASSATSIIGSTDQCSYVCANTVLDSLSKYRKSIGLPSICTNYGAIESAGFVSKNESVAAMFNGIGIISISTDLILGTLDLQIQNQQSSTNLMLSDFNFLNFVNNNLQLSLISKFDFQTNLAKNQVNEKLQNQTQNQNLQIQSPSSTTDCQTIIKDSFLHKISEVLSIDISKLNLDLKLLDYGADSLAIVQIKNWIDMEVSPNLIVIQQLQTFTITSSIQYTINSFLKKKVQSQE", "length": 2551 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559I8-1", "protein_name": "Uncharacterized protein DDB_G0272530", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIKLILVLIVFLTIVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCESNNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDVCTANNQCKFNNYCKSGKCVPLEKEGSSCDKDSSCSLTNACVGGKCVTKYQKPLGAVCNSSNECQVFSGHVCGANGKCSVYNQLLSKCKENSDCGPNGMCMCKSETENVCVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYPIFMCYQYSCFYMNQFIRSTQNYYKSFCS", "length": 301 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559Z2-1", "protein_name": "E2F/DP family winged-helix DNA-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNISLLLNNRNRNRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNGNANESASLNNGSEEIRSNPSSNFSSPIQSSLSSSSSSLSSNQATTPKKRSHAHKNSLKCQSPQMSPQMSPQMSPQMSPPLQYFPQHQMQHLSQYQLDHLQQQQQLIQQEQQEKQQQQQQHQHQQQQQEQQKQQQKQQQRLSPQPRSSQPRSSPPRSSPQRSPQLNQQEGHINSVQTYSGNNINDKNQNNTNNNNNNMSNNNNFHDDNNCNVNYNNIRNNSNNNNNNNTNNNNNNNNNNNNNNNNNNNNINNNNNNNNNSNNNNWNNNYCNNSFADETNKNNTYGMEYINISEENQYNNNNNNNNSNNNNNYNNYNNYNNNNNNNNNNNNSNNSNSNNNNNNNNNNNNNNNNNRNNIINSNINNSNNNNYNDNGYNNNSNINSNDSYNNNNNNNNNFNNNNFNNNNNNNNNNNNNNNNNNNNNKNNNNSNSYNNNNNNYNNNNNNFHNNNNNSAHNNNNNNYNNNNNNNYYNSNNNNNFHNNNNNNNNNGNNFNNNNNNNGNNGNMFTNVNSIDNVNRNNYNNYNGNNNYNGNNSNNNNNSNNEVSQITTTSLPVKKTKVFKAPREKKFKRGPDQDIREIKPATALLKQYFIGNSITEFNAERVGSILKINHEKLKDILDIMECASLVINNHSNNYVWLGLDNPGFLKLVFNVFHCSSNLVTKEPEFACLKCKENAYRCPTSVDLPKDTRLGSTVCQFMKLLLSKRIRTNPVNDFLTIYQVCFNFNFCSEGRCPEEDFKYLRNTAKVKRCYDVANVFNGLNILEKVGKSKIHSYQWCGDFTIQDCENGCPFGHPLLTPGTAYTTNPSPNPFNQFSNAYISSSAQSSLSNSPFIQGGFHGNNNNSNNNNINGNNINGNNNYGYNNNNNYNNYNSNNSNGFNNGNSFFQQQQPLVNSGVSMVRNNNYSYSP", "length": 964 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55A39-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSNETLPNSEQENNSKTDTKNDNKNIGDENKIIDTDKDMKDNDTINGKENGNININSNNNNNNNIDTDKEMKETSSIEEDDNNNNKNQNNNNNNNIKEENDNLTELKNNNNKENKENKEETIKEDKEKENNKEPVKNKEETNNINNNNNKNNNSDNINNNNNNNSKETLNKISSMSKVSLTSESSEINGQVNTGVVNNNTNIDITQTNLDEPRDSRVIKSILKTMGIQAHEPRVVNQLLEFMYKYVFEVLQDAMIYGEHSGKTDIDVSDVRLSIQSRVNYQISTPPPRELLLSIAEEKNKTPLPPIPNRYGVFLPPDEYCLTNPNYQANPTKPVFQPVQPLVGNTSRGNYNKKQSDKQVSIKFNSMSNNSTTTTTTTPPTIGSQNGTTIVSPPNLGSLGTTTTTTTTTITPPPPILPLSSNIKPPTLSIPSSITSPPTVTTKNTSTPIIGLGSTTVAPPKTSSSSSTIAPPVLSLPTSITSPPTVTASSTTTTTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMKDDITPSSTPQQPSQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTTPPPQIKEEK", "length": 619 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55B17-1", "protein_name": "Amine oxidase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKKILLIFALFILVNINFASSEFKKNETESANLKSLYASYLMKNNNNTKYNNNDNSNNTNIYNDSVTKNKSKNKNELTVGIIGGGIAGLYAGMLFIKSMIFDDLGIDYTILEANKERVGGRVYTHKFDDHKYSYTDLGAMRIPLTPLMDRIVSNQNYSLFSKLAKGGYQIPTVPFLISVNNEISYYNGIRVLKGSPVLNPSDPFNYSDSNNGGPGKGIPDEYANRTVDSLILPVFYQFINNLTVDFYNGFKQMLKYDSYSARDYLKTFHNYPNSVIEYIENLSTISGRLDQTSITELLMSVFDFSGEKFVCVEGGTGLIVKSMSQIIKKKVEMGSFVTKISKSFDKKNNEIDGLNVEVVRDSNFGGSDTEILKFKHVISTTTLPALQRIDTSDLKLPLKLKVAIRSLKYTGAIKLAINFKYRWWEDSEFMSGKPIRGGSSNTDLLLRQVVYPSYGINNGTKGVSGVLLASYSGGLESIRISSMIGKKDKERKLLNIVLRDLAEIHNVDLKKLKNLYKDHFFQSWDNDEFSSGAFALFSTSQYTELFPSTGQSHVDGRFHLSGELTSVHHAWMIGGLNSAYRSVDLILKNEGFEDLRIKLRNNWGTIEQAEYPSLDWYKYDSDINHYKLY", "length": 630 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55BT6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLLYIVVFLLFAIKLCCSEYCGETYCVENRNCYSFIGCRNSTCLYETIDLDDEVDCTVDTCSDRYGVKNTPNNSLCPPENLCDMFLCDTQSGCVAIPKVNCPAPNPCQIPLGCNRETGICEYDEIDCHDDNECTNDYCDPILGECVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYCDFKNGCVSQKNDWNCDSLSACSEGICTDNGCVQQEVDCDDDNPCSEDFCHPLFGCGSILNDTICTNGNKCVNSTCTEDGCSLPVPIVCQDGNPCSDDTCNPSTGCQFTLNNSNCNDGKKCTIDQCGLNGCTHTNITCPPKRVVDIILIGLICRNHYCDQSTGNCVPDMNSVSLLCI", "length": 370 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55C69-1", "protein_name": "Chromo domain-containing protein", "gene_name": "hcpC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKTNKKKIEEESEEEEAGDVFEVEKILDKRVQHGRIQYNIRWKGFSADYDTWEDEANVVGCPELVREFESSRIKEKKKNRKRKNVIIDEDPTEEISSSLSSILSSPQPQPPPPLQLTNHSPASSELAITTNTFLISNCTSTSNKTKISIENEEIIKNDHARYGVPYVEGIGFENGDCVDEIVGCKPFGENNLLYFFIRWRGKEKLSWVSNESIKQKEPLQLIEFYESRLKFGYKGEEN", "length": 239 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKNNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH7-1", "protein_name": "SsDNA-binding transcriptional regulator", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIFKITRTKRRWTKNQKKILVMKVVEKKVVVKKSKTPNTSPSSSSSSSSSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQLVVILENGDTIKDWIKESK", "length": 129 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CJ7-1", "protein_name": "diaminopimelate epimerase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEPSIDNKPSFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIESYMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI", "length": 355 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CV8-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MELLVGGTILGALTYAYSSLKRTIPEGAHACSPFYPEKYVGKWYEIARLDFYYERDMNNVSAEYTLNKDGTISVINSGYNYVEKKRESVNGKALFVHGSDEAMLKVSFFGPFYAGYNVIAIDPDYKYALVAGRSLDYLWILSRETSIPDHIKKQYLELAESIGYNTSKLIWTEHDNINNKKD", "length": 182 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D49-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D57-1", "protein_name": "J domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIQVKNKIKIISILITLFILTINQVVECKSSLYYSILNDYEKGIDYYKILNVTKDSTYSEIKKSFRKLSLKHHPDRNVEKSSHSLYILLNQAHSVLTTDETRKEYDELLVNGIPWHENYYGKYAYRYTGISHDLRHVLLGLIIVITIGKFVYQYNKHHSMIKRAKQTDQYKKRLAQLDGDEDEIQLVIQGADKPTISSLFIIQLFFIFPFKILKSIYTFIFINKFKFIQKTDEEKEEEYRLKMGYTKEDWEYHKKKSIERMEKLKQSGKYKKYLRSKNK", "length": 279 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E25-1", "protein_name": "DRBM domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKSHTSEKVQLNEFLQKKKQPIPIYHTESKGSEHNKDFKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKKIYDEKLQAVYNSVSSGIEGLNNNSFFTKIENNNNNSSSNNNNNLDHNHSNDSSHTSTDNNDNNSNNHNNNNNNQINIDLTMENVNISQSKTITNEGTLNNDNDNNNNSIQQQQHQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCFDKDKTNLKKKKKIPFSYNTDLIEHIDLFKRQDFPQTYPSRTTYTDTGHTQQLQKQVFLLTEKIGLMELFYKKQIRVILKSHHNLETELSALKSFVEDCSVTPIEGLELYSIPVPLNPNAKPSAGTTPVLSKSETQNEIIQPTKPPTKPPASCLIKKKIPNVNMKATNKTTTTTSTSTSNSSTTIKTTDSFKNTTNNQHPNTLKPMVSKINQQTSDFIFPLPKPIIRRNPIGNGNLEKKIEKKNSKPNTIVLGVDTQSQSKTKITPSPTTPPPETTPTTPTTTATPTTPTTPTTPTTTATPPPTTTATPPPTTTATPPPTATTPPPTTATTTPPPPPIIATTKTTATATATTIPIDLNEIQIPIRSPQDLTVNQSMISTAMMIASAAQRNPKLTMKLKRKLEESPTLMSKLQKIQFEKEEEILCSQDLHSPIMSPQSPTHQPKTLEPLSPTKKSTQKSPPPTSPSPIVTRARASSNLLPIQNLISKK", "length": 733 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E47-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E48-1", "protein_name": "thioredoxin-dependent peroxiredoxin", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKLKVGNIAPDFEAKNYLGQIVTLKEFKEKSQPIVLYFYPKDNSPECQKSCEFRDKYQKSIEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGILLPGRKTFIIDKHGFMAVFMMVYSVQLLMSMNL", "length": 142 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55ED8-1", "protein_name": "Decapping nuclease", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQTLNVIGLINFIKKQRSFNKSPITITKPLEITRFSYEGNQLFPAKLKKFKNPTIDSDLLVGFQGPDSIESDSQTPLSLVLNKLIETKHDVSKSNFISFRNSFRKLFESMYDSEKWNIQVQRINSTIHLGMDNPTQDFHQLKNFHLKSMYSGNYFEKISTIDNNNNPNDNKHKYCSIIQSKLFNNNFILACEIDCWKKSIQNNNNNQNNNNNENNNNDDDDENYNIDDYVELKTSRDIEDSKANYQFRSKKLIRIWFQAYIAGVSKIFLGIRNDDFFLKKCLNFNTHDLPNQAINWNKDEMLIYGNEILEFIKNNTCSGKSYTLSFNYPIISLVESDSINIINDQYLQYYLNIPKNFENNYNQNNNQNNNNNNNNENNSDDTKNNNIQNNNENNNIQNNNENNNQNNNEKNQKRNFGEEKEIKGDENEERLSKKQKKLE", "length": 440 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55EZ2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55F94-1", "protein_name": "Dynamin-like protein A", "gene_name": "dlpA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEEIRRTNAAAANAANKELNEQVEISSLEQMGKLDPSSTIHDMFSFFPNEVYNSYEKLQYFSRDLNTAVSHPEIVFVGPRSSGKSSLIEAFIGRALNIVGGGNIVGVGGSNANGCSKRVLYLQFTNNIDFEVPKVTIKKDNTIKEFDHDIIVSIEQLNENLAKRNQLTNDYIEEPIYVSIESRTTLNLTLIDSPGLLFDQSQAESNKIESIVSSLLRPSHRLIIAVESCSQDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTLPNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSYQDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTSEGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGGQQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDTFVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPSA", "length": 880 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55FX4-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDINSNHIKKINDFKDKGNKEFNKEKNKDKLNKRAITYFQLGIKYFNDEKHKIEINDQINKLISILYSNLSLMYLKGDEIILSLEASNKSIEFNNQNSKAFYYQSICKSYLCDYKGSMESIDKAISISKQDEKVVQQRNRLIEITNNKVKEDVYFENVLKNQKLENVAYENSIEKGRYLISKRLIKRGEEILRIAPFSFSLNGKYVSKFCGVCYQKKSIDNLLKCKDCDDFAICKECKAPNEPLSKYHPNDLCVLYKLNNEYYKMNNFEIANEDNKERGLTDERRLYINTIYNIFKNKTNNKAVVEVDNAISSSVIDVLNLSKKLLNHTNESQRAYSDSTKMKTDILELIFKSFYGANTLKKDEISNIIRIVDCNSHGYSDVISQKKKASGLYPFSCYTNHSCIPNSDYFIDKHGVMVLYASSDIQESEAITISYIYFLNRVEKRRKDLLNGHNFFCTCDQCSFQSSLTEEVCDKCNEIIPSTIGNSNLVYKEPKSLKETGFNYICPKGHTKSSLVYDIDNDQLYPTIAENYSKCKDLRNFRKINIFKEMLENRDFVKKLTPREFEVTPLAKYIANPKKSNSMLFEELINLVRGSVECGLTKSIEESNYSTYLVYDYYDLYKSLLLESKPQILKLNSIRDIIIKLLTPMVYNQNKPRIDKKLNKHLSNKINLKKNK", "length": 676 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55G93-1", "protein_name": "Tubulin-specific chaperone D", "gene_name": "tbcd", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENSEDISLNSSEKSIESSVVNLEDQQQSQQQTQQQTCQKTFVQEAPELTILIDKLIQLKHSNKDELISNTTRIIYIIDQYLEQPTLLDIHLNDIIQPLINFIKSNYINNSNNNNTTTTTTTIMTETEIVIKKLSIKNSFRIIYVLSKVRGFKTIVKLFQHEAIDLLPVLDQLEISYHQWVNINKQRDRLNEISVSYSSGINLKNYIKPEEESEQEVVDENNNNINNNHNIDDEYNENIISWEEVYVLALWVSLLVIIPFKFSSLDSASSGTASAAGDGGDGDGDGQLKSISSRILKLGKLALSDVSKIRDSFSELLSKLLNRPDMKFEQKQFIKWCTNSIQLISNNNNNNNQNNSSNNNILLIIGIYSTLATMFKKGNRLDFLPIDMNLYEKIMEANKYLSLSGSERITKKIFLKLLQRIAIIMLPPVSASWRYQKIIKPLLLKGELIKQINNNNNNNNNENNNEEGEEEEEEIPEEIDEILEEIMKSLKDKDTIIRWTSAKAIGRIVNLLPKDMGDQVIGLVIDQMFEKNEFIDADPSAWHGGCLALAELARRGLLLPERLDVVVPLVIRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREINCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPIVIKHLATIKIYNWDLEIRQLASKSIHLLTNINPNDIVSNYLPLIIPNTQSDLVHVKHGASLAISEILISLFENNNINLLSDNLKMMILMTIKNTKNEKLFKGKGGVLIRIGMCKIIYSICLVEFSLDKNLSEIKKPTESTSTNGNEDRAAALKLKIAMLKAKTASQINKPIITPPSSKSTTNNNNNNNNNNLNDNEIAFNIILGYLNENLNHPNEEVQKEASKAFELLFSKYISSNEKISLLLELIDSHCKTLKFDINRSARRGSSLLLGSLPFNSANLSYDLLSKVVNELILSIFQDDPKFKDIETRVNSISSLYKIGIYILNLIFKNQENEQKEEEDFKKSKNYNLFIKIWNCLGLATNDYSIDKRGDIGSWVRELSCKVLFDFIKFIITNQNSSTTTTTASTTDLSIENLINEKMITEFICKLFQLSGEKLDKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLICKVLKFNCYLYPLLFGLFSSLGGTSKYLINDSIQSIKQYFSSFDNDEKERFEKIISFSKAILEITNNTTQRMIQPTFRSIYNLLSTHIFDFLIINNLNEQSIFETILFNCYQIIESNQDDIYLLLNSIELFSYFFIQFENNNNEYIKDYSLKALLLLLSNLKYPKVRKLASDQLKKSTRLFINNNGDDETPSLIKSLIFNTKWDDSVDLIIEPLKSLLLLLNQKHLLELLSENPTKKPIPLAPPITSIEELKDKIQNPHKQSDDNNNNNNGELINNNTENNNNNNFDDNLPEDSQDLMEI", "length": 1480 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GP8-1", "protein_name": "Rho GTPase-activating protein gacO", "gene_name": "gacO", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKLPPPPVQSSPQGFQLPSLHSVQLKPVRPPPQPTQQQLASNTSPREVGTSLSPQSPSNNINPSSSSSSPSSSIRQSPSSSPNVARKVPPTPTNNNGGPPTTTTTTTTTMPPPPAFIKKLSPSSSPILPKRIVSSPPLNGNTAPPPPPIVHLPPPPPTNLPPPPTLSPSSSTTTSPSSSSLNLSGGVPLPPRILRNSDGSANNNNNSNNNSNNNINSLNLSTSGGIPPPPSFFNNNNNNNNNSGSFVNSASSNGSPSLQSQNSVGYFKPPPPPVPTRSASLDPKQMGQFIKPQQNQNNSNNINNINNNNNNIILPPPPNININNNNFVPYIPSNNNQQQSTTPPPIVSISPLKRNSIDNSVVNKRLSQDLNTMLVNRLQHGLSPPVATPFFDDKILGSASKSAELKEKRDQEERERRERERIKKEKEDSEKKEKKEKKGKEEQEKKDKKKKEEQEKKDKKKKEEEEKKSKSSSSSSSSSKKSSSDNTIVNQNIFNNTLSQIMENQRDAQSLSPSSLPYPLILKLLTESIMSLNGPYTEGIFRITGSGTEVNRLKKQINEHDFSLDTQDPHVLAGLLKLWLRELVHPIIPSELYNDAIKSRSKEEVSRIISLIPDQNKEVLNFLIPFLKNVSQPHYAQYSKMDIDNVAMVFSPGLLRSTVLTTDLLLNSQYEKDFVKCLIEMSP", "length": 684 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GR8-1", "protein_name": "Thiamin pyrophosphokinase thiamin-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKQEEEVQQQQQQQQQQQQPDKNNKETITWDVAEYGGYLFDKKLKAHNPLNHQMPLQYHHSQSTPHIPSSLSTSSTTSIKKPSSSLSDDESGGSSSSTPHSSNTPRKQFSFDDHCALILANQKLPKKLVDYFWDKCSVRICADGGANRLYSLGTKINQSSRWIPDYIKGDLDSLHEGVSDFFSKKGSSIVLDSSQDTSDLQKCFELIIDLEKGSGIKYRKIFILGGLGGSFSHEFANVNTLFDHPGRKIILASKDNLAWLLSSTYNHNIICRSETKCSLIPLSSKASQVTTSGLKWNLVKQSLNFGELISTSNVSLDNKVCVETSNPLIFIVDINP", "length": 337 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q561S0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRLLRLVPASASARGLAAGAQRVGRIHTSVHCKLRYGLLASILGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQYSSSTTGDGRPLDIEFSGSCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQKKGDPHEMKVTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYLNYNKGPWLKQDDRTFHNLRMLVQDKREVLNYTTVPVYLPEITIGAHQGSRIYDSFRELPGRKYAPGYNADVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q568T5-1", "protein_name": "Chondrolectin", "gene_name": "chodl", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRATLRILCALTFLVSCSRGARVVSGQTVCQGNPEHPCYKIAYFKDVSSRVAFWEALQACEMDGGSLLSIENTAEQKHIEHLLRELSVSSSTGPASITDGDFWIGLTREEGDNAQEPGAFASCPNLYRWTDGSVSLFRNWYADEPSCGGEACVVMYHQPTALAGPGGPYLYQWNDDRCNMKHNFICKYEPESHLVKVQSDRPGGHDVDLSTEDKEDRRTPPTDEDESPRLIIAGPSSMLLIYVIIPTIPLLLLILVASGTCCFQMLSKSKPRTKTSVNQSTLWISKTPKIDSGMEV", "length": 296 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5HYN5-1", "protein_name": "Cancer/testis antigen family 45 member A1", "gene_name": "CT45A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKAKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETASSPKSQREINADIKRKLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5I0J8-1", "protein_name": "PHD finger protein 11-like", "gene_name": "Phf11l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFEPSSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGATVGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYKLFCQRHAPGGQEPTQVDAAVKASFLKKCLEAGLLTELFEQIQQKMISIHGRFMDDTASESDYEGIKILLFDCGLFKDTLIKFEEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGVLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGDSL", "length": 293 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKDLAIGVIFILQCSMGILRHFILLSYYLMLHYNKHSLKPIDLILMNMFIANFLIIFPKSMLQTVEAFGIKLLFSVFVCKFLLYIERVGRSVSIATVCLLSVFQAITISPRNSCLYGLKVKVPKYISLSIFLCWALYFVVNMILPVYAYIKWSSNNMTYKRTLKYCFSVGHDEFTGSFFTILFVFPEVFLAILIVWSGSSMVVILYRHKQQVQHIYCNYASTRTSPESRATKSIVVLVSVFICFYSISSILYGCIALFCDNSWSLINIANIISLCFPVLGSFVVSHNPDFPRFSLSWIRNTRRV", "length": 306 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNDRMESKDLAVGVIFILQCSMGILRHFTLLSYYLMLHYNKHTLKPIDLILMNMFIANFLLIFSKSVLQTVEIFGMELFFNVFVCKFLLYIERVGRSVSVATVCLLSVFQAITISPRNSCLNGLKVKVPKYINLSIFFCWPLYFVINMILPVYGCIKWNSNNMTYKRSVKYCFSIGHDELTSSIFTILFVFPEVFLAILIVLSGSSMVVTLYRHKQQVQHIYCNYACTRTSPESRATKSIVVLVSVFICFYSVSSILYGCIALFCDDSWWLINIAHIISLCFPIFGSFLVSHNPALSRFSLSWIKNTRRV", "length": 311 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3F0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "LOC100911184", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFWNLAIRIIFLSQIIIGILGNVSLLFYYLVLYYREFTLKSTELILMHLMVANIIIIFSAGVPQTMTIWGMKQFLNDFGCKLLLYIHAVGRSVSICTTCLLSVFQAMTIRPQKFCGNDHKVTMERYLGCFISFLWVLYFLVNFIFLVYTYIKKNSNNETRKRDFGYCSTVGSDKISDSLYATLVMCPEVFFSVLIAWSSGSMIVILYRHKQKVKYIYSTHVSRRDYPESRATQNILAQMFTFLAFYTLSSTLRGSIALLSNHSWWLMNINHFTSLCFPSFGPFVLMSHYSIVSRFILFWLRKNCSNFLL", "length": 310 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JQC4-1", "protein_name": "Cancer/testis antigen 47A", "gene_name": "CT47A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARNLWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT", "length": 288 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5QNN9-1", "protein_name": "Trace amine associated receptor 12e", "gene_name": "taar12e", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSLNETQTENILLCYPLLSNSCPKLHRLAVVQVGLYVFLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGLLVMPYSMVRSVEGCWYLGDVVCKVHSSLDMTFCISSLLHLGLISVDRYWAICDPLRYRLRVTNITVTVFIVFIWLFSFVYSFYVVFSGVNTVGLETFIMQVYCVGSCVLYFNKQWGLICPILVFFLPGAIMSSLYMKIFHVARKHAKVMSERVTGGLKSQSSAQRERKAAKILAIVMGVFLFCWLPFFTVNALDPFFNFFTPADIFDAVIWFAYLNSTCNPLIYGFFYPCFQKAFKILIFTYICGVRNLDTFA", "length": 337 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP0-1", "protein_name": "Trace amine associated receptor 12g", "gene_name": "taar12g", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSNESENIQLCYPLLSNSCPKLHRLAVVQVGLYICLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGSLVMPNSMVRSVEGCWYLGDVVCKVHSSLDMTLCISSLLHLGLISVDRYLAICDPLRYRIRVTNTTVTVFTVFIWLFSVVYSFYVKFSGITAVGLEMLILQTYCVGRCVVFFNKQWGLICPVLAFFLPGAIMSSLYMKIFHVARKQAKVISERVTGGLKSQSSAQRERKAAKTLAIVMGVFLFCWMPFFTLTALDPFFNFLSSADVFDALFWFAYLNSACNPLIYGFFYPCFQKAFKILIFTYICGVKKANTLTFE", "length": 336 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5R1F6-1", "protein_name": "T cell receptor alpha variable 5N-4", "gene_name": "Trav5d-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTYAPTLFMFLWLQLDGMSQGEQVEQLPSILRVQEGSSASINCTYENSASNYFPWYKQEPGENPKLIIDIRSNMERKQTQGLIVLLDKKAKRFSLHITDTQPGDSAMYFCAAS", "length": 114 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5RKI7-1", "protein_name": "Solute carrier family 7 member 13", "gene_name": "Slc7a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMDIEKKIYLKRQLGYFWGTNFLIINIIGAGIFVSPKGVLQYSSMNVGVSLCVWVFCAVLSMTSTLCAAEIGITFPYTVAHYYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALLLAEYGIQPFYPSCSAPAVPKKCLALAMLWIVGILNSRGVKELSWLQTVSMVLKMGILSFISLSGLFLLVTGRKENVRRLQNAFDAEFPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEPSKTIPRCIFTALPLVTVVYLLANLSYLTVLSPQELLSSDAVALTWTDRVIPQLTWSVPFAISASLFSNLVTSVFETSRTSYIASRNGQLPLLCSTLNVHSSPFIAVLLDVSMGSIAIVLTNLIELINYLFFVFSIWTVLSVIGILKLRYQEPNLHRPYKVFSPFLFITAAISLSMVLIPLIKSPKMQYIYVFLFFLGGLLFYVPLIHFKLKLIWFQKLTCYLQLLFNICIPDVSDEHVAEEES", "length": 479 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5XHX8-1", "protein_name": "Sperm microtubule associated protein 2", "gene_name": "Spmap2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGELGEHRSRSSLLSIPVLDTKTSGGSEYRESDGSLDLQSTLFEDHWLQSSQATTERNTDDPEEEIPPEEMVGEELPEVSNLEDSLRRDLEVEVVGMSHLSINERTTPTTSSAKCRKKKNHRLLELAKPKFNWQCLKDRTGRCCKGHVWISPRKTNLQFCLYWPSVYWTERFIEDTTLTITVPEVSRRVEELSRPKRFYQEYYNNNRTTPIWPIPRSTLEYQASNRLKRLATPKIRNNIWSINMSEVSQVSRAAQMAVPTPRTLRLAKPRAPATLLEEWDPMPKPKPYVSDYNRLLQLATPKALSEKCVPDRSPQWEVLNVTKNAVASSRIISLAQPKIRKDLNEGYNPYYISPASLVAQASPRIYELAVPKHITKKV", "length": 378 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q63550-1", "protein_name": "BPI fold containing family A, member 2F", "gene_name": "Bpifa2f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQLGSLVVLCGLLIGTSGSLFDIFQNPELDVESVWSEINYRIRYALETMDLDMLADYLSKRGIELKIKDLRILNLNHEVSPNGDEVTLKMPMALNASLSLPARDLTTDVSISMEAITSFAIEKDPKTGRRVLNMQRCSLNTDNTSISLLNRKSNFVNLALDSALYLIKRGLTLPVRRQLCPVLQLIISNTFHPDEISNPQTAIST", "length": 206 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q64583-1", "protein_name": "Cytochrome P450 2B15", "gene_name": "Cyp2b15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVLLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFINTYLLRMEKEKSNHHTEFHHQNLVISVLSLFFTGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSEAFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPVAPEDIDLSPINSGISKIPSPYQIHFLSRCVG", "length": 495 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q66X01-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9C", "gene_name": "Nlrp9c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVDSSSYGLLQYFQKLSDEEFQRFKELLQKEQEKFKLKPLSWTKIKNTSKEDLVTQLYTHYPRQVWDMVLNLFLQVNRKDLSTMAQIERRDKQNKYKEFMKNLFQYIWTSETNTYMPDRSYNTIIDRQYKALLDIFDSESDPATAVVLGTRGKGKTVFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSKLPECSETLDDILSNPKRILFVLDGFDYLKFDLELRTNLCNDWRKRLPTQNVLSSLLQKIMLPECSLLLELGESSCSKIIPLLQNPREIIMSGLSEQSIYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNPSMLWMICSSLMWGHYSREEVISSSESTSAIHTIFIMSAFKSIFGLGSSKYKRFKLKTLCTLAVEGMWKQVYVFDSEDLRRNKISESDKTVWLKMKFLQIQGNNIMFYHSTLQWYFATLFYFLKQDKDTYHPVIGSLPQLLGEIYAHKQNQWTHAQTFFFGIATKHVITLLKPCFGNISFKTIRQEIIRYLKSLSQPECNEKLVHPKKLFFCLIENQEERFVSQVMNLFEEITVDISDSDDLGAAEYSLLRASKLKNLHLHIQKKVFSEIHDPEYGSLENFKLDQKFSAINWTMLSILFCNLHVLDLGSCHFNKKVIEVLCNSLSPTPNMPLTVFKLQRLLCSFMTNFGDGSLFCTFLQIPQLKYLNLYGTDLSNDVVEMLCSALKCSTCRVEELLLGKCDISSEACGIMATFLINSKVKHLSLVENPLKNKGVMFLCKMLKDPSCVLESLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDIGVNLLCEALKYPNCTLKELWLPGCYLTSECCEEISAVLTCNKNLKTLKLGNNNIQDTGVKRLCEALCHPKCKVQCLGLDMCELSNDCCEDLALALITCNTLKSLNLDWNALHHSGLVMLCEALNHKKCKLNMLGLDKSSFSEESQTFLQAVEKKNNNLNVLHFPWVEDELKKRGVRLVWNSKN", "length": 1004 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q675C0-1", "protein_name": "Taste receptor type 2 member 102", "gene_name": "Tas2r102", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPVIYSFATLLIHVEFIFGNLSNGFIVLSNFWDWVIKRKLSTIDKILLTLAISRITLIWEIYTWFTSVYGPSSFAIGMKLQILYFTWILSSHFSLWFATALSIFYLLRIANCSWKIFLYLKWRLKQVIVGMLLASLVFLPGILTQRTLEERPYRYGGNTSEDSMETDFARFTELILFNLTIFSVIPFSLASISFLLLIFSLWKHLRKMQLSSRGHGDPSTKAHTNALRIMVSFLLLYSIYFLSLLLSWIAQKHHSKLVDIIGIITGLMYPSAHSFILILGNSKLMQTSLWILSHLRCRLKGENILNPSGNQVTSCYIFCIANKSVS", "length": 327 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q68FP3-1", "protein_name": "C-C motif chemokine 6", "gene_name": "Ccl6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRHSKTAISFFILVAVLGSQAGLIQDTVKEDRPFNPTIIHQGFQDSSDCCFSYASQIPCSRFIYYFPTSGGCTKPGIIFVTRKRKRVCANPSDQRVQTCISTLKLGPRSGNSAIA", "length": 115 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6EKJ0-1", "protein_name": "General transcription factor II-I repeat domain-containing protein 2B", "gene_name": "GTF2IRD2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRKIDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYTERMRDEKLHELKKGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLRVEKSLKKFCINWSRLVSVASTGTPAMVDANNGLVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT", "length": 949 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NXT2-1", "protein_name": "Histone H3.3C", "gene_name": "H3-5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 135 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P3W6-1", "protein_name": "NBPF family member NBPF10", "gene_name": "NBPF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRSLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGSYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSQDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAFDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEENHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELCDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDKIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEREVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", "length": 3795 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6UGQ3-1", "protein_name": "Secretoglobin family 2B member 2", "gene_name": "Scgb2b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLALLVTGELGFQRTEACIPFFGVYLGILSGNRIGLHTELAPFDPTVEEKEAFEKIQDCYEEEGLKAKTEDMKLMTTILFSSECRSYYTKEVLKNILVKFSKKLTHGS", "length": 114 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6YCH2-1", "protein_name": "TD and POZ domain-containing protein 4", "gene_name": "Tdpoz4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGELEAKSRGDTQSHEQKLCYRWTISNFSFFVEETEEYITSLVFSLEDNDKMTWCLRVYPTGVDEKNKDYVSLYLILLSCEKGSVWAKFEVCILNAKGEKCNTERIPSFSRIQPHQPFGFEKFITRDSFLSPAQVLTPDDKFTLLCKVSVLQDSFSISGQNPRPAIKVTRCTLENDVGELWENPLFTDCSLLVAGHEFRAHKAILAARSPVFRAMFEHEMEERLTNCVEIHDLDPQVFKEMMGFIYTGKVPHLHSHSMACDLLAAADRYGLEDLMVMCEDALCRSLSVENAAHTLIVADLHSTEHLKTQALDFIIVYASEVSKTSGWMSMVESHPRLVAEAFHSLASAQRVFWALPFKQLKWSLRPTQL", "length": 370 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZMA2-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNCTQSPGFILLGLSSDPEKWQLFFSIFLALYLLGFLGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKMLEALWTGDGSISFSGCLTQMCLFGVFADMDNLLLAVMAIDRYAAICQPLLYPLLMTPCRCGVLACGSWGIAHCASLVYTLLLSQLSFHSNQEIPHFFCDSRPLLWLSCSDTHLNEFLMMVLSALLGISALLCIVSSYGCIFCAVARVPSAKGRRKALATCSSHLSVVLLFYSTVFATYLKPPSTSHSSGEVVAAVMYTLITPTLNPFIYSLRNKDVKNSLKKLLNMEKPLD", "length": 309 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q70YC5-1", "protein_name": "Protein ZNF365", "gene_name": "ZNF365", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLTKCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKAHFHPKGRNHLKKAKDDRASMQPAKAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII", "length": 407 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q71LE2-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q7KR10-1", "protein_name": "Probable cytochrome P450 12d1 distal, mitochondrial", "gene_name": "Cyp12d1-d", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNTLSSARSVAIYVGPVRSSRSASVLAHEQAKSSITEEHKTYDEIPRPNKFKFMRAFMPGGEFQNASITEYTSAMRKRYGDIYVMPGMFGRKDWVTTFNTKDIEMVFRNEGIWPRRDGLDSIVYFREHVRPDVYGEVQGLVASQNEAWGKLRSAINPIFMQPRGLRMYYEPLSNINNEFIERIKEIRDPKTLEVPEDFTDEISRLVFESLGLVAFDRQMGLIRKNRDNSDALTLFQTSRDIFRLTFKLDIQPSMWKIISTPTYRKMKRTLNDSLNVSQKMLKENQDALEKRRQAGEKINSNSMLERLMEIDPKVAVIMSLDILFAGVDATATLLSAVLLCLSKHPDKQAKLREELLSIMPTKDSLLNEENMKDMPYLRAVIKETLRYYPNGFGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVEFNRDASRPFKTMFLMEPAITFPFKFTDIEQ", "length": 521 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7M715-1", "protein_name": "Taste receptor type 2 member 117", "gene_name": "Tas2r117", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKHFWKILSVISQSTLSVILIVELVIGIIGNGFMVLVHCMDWVKKKKMSLVNQILTALSISRIFQLCLLFISLVINFSYTDLTTSSRMIQVMYNAWILANHFSIWIATCLTVLYFLKIANFSNSFFLYLKWRVEKVVSVTLLVSLLLLILNILLTNLETDMWTNEYQRNISCSFSSHYYAKCHRQVLRLHIIFLSVPVVLSLSTFLLLIFSLWTHHKRMQQHVQGGRDARTTAHFKALQTVIAFFLLYSIFILSVLIQIWKYELLKKNLFVVFCEVVYIAFPTFHSYILIVGDMKLRQACLPLCIIAAEIQTTLCRNFRSLKYFRLCCIF", "length": 330 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7M719-1", "protein_name": "Taste receptor type 2", "gene_name": "Tas2r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCAVLRSILTIIFILEFFIGNLGNGFIALVQCMDLRKRRTFPSADHFLTALAISRLALIWVLFLDSFLFIQSPLLMTRNTLRLIQTAWNISNHFSIWFATSLSIFYLFKIAIFSNYLFFYLKRRVKRVVLVILLLSMILLFFNIFLEIKHIDVWIYGTKRNITNGLSSNSFSEFSRLILIPSLMFTLVPFGVSLIAFLLLIFSLMKHVRKMQYYTKGCKDVRTMAHTTALQTVVAFLLLYTTFFLSLVVEVSTLEMDESLMLLFAKVTIMIFPSIHSCIFILKHNKLRQDLLSVLKWLQYWCKREKTLDS", "length": 310 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTZ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 1", "gene_name": "USP17L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHCKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TMR7-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "Slc16a6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQKNSKLCSRANVYTQVPDGGWGWVVAASFFFIEVFTYGVIKSFGVFFNDLMDSFDESNSKISWIISICVFIMTFTAPLSTILTNRFGHRLVVMGGGLLISVGMIAASFSQRVYQMYISIGIVSGLGYCFSFLPTVTILSQYFDKRRSMVTAVASTGECFAMFAFAPAITALKEHIGWRYSLLFVGLLQLNVMVCGALLRPIIIKGPGSPKAIPLEPRREVQYMLENEKTRTSIDSIDSGVELTTSPKNVPSEAKREQEVRVEQQQTLVVGPKHSQKRAPLLDFSILKDRSFICYTLFGLFATLGFFAPSLYIIPLGISLGIHPDRAAFLLSTMAIAEVFGRIGMGLVLNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMLCSVFFGSMVGTIGGTHIPLLAEDDVVGIEKMSSAAGVYVFIQSISGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKKGLCQNPHSGENQTDGHRGKALQDIPEDFLEMDLGKCEPRAHMKMDPV", "length": 522 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TN50-1", "protein_name": "Mas-related G protein-coupled receptor member B8", "gene_name": "Mrgprb8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQNSIP", "length": 328 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TPX8-1", "protein_name": "Oogenesin-2", "gene_name": "Oog2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNFYSPPTLMELARQCLLRDEYLAISALKDLPNMMFPVMFKEAFIDGHTKILTAMIPVWPFPYLSVGTMLKNLNLDTLKAVLEEIDILISKPVFSSRCKLREITLSHDLVVVWAGSHEVEGLPEFMEQEKPVENSPGYGTKNKLKVTTELQFMEGHLDECSTYLLQWAYQREDSIHLHCRKLKIYGLTKAAVIEMFKIVHAEYIEDLELSCLCLEYLDFLNPYLKQMSNLLSLTLDEIIYTLNIDDYRNLNEEKVITVISHLPTFHHLQELYVHGVIFIECLRCLKKPLEVLSFTDCDLSQSDLDYLPYCLNIFELRSLHLTDVRLSNLLLEPLGFLLERVRHTLKSLQLMSCEMGETHFNALLPALSQCYQLTVVNFYGNELSLLFLKKLLHHTAKLSQLADELYPAPQECYDNRDVVLSHRLENFCSELLDILRAIREPKKVTFGTIKCSKCGGSYVYDLETQCCFFEKNPPWA", "length": 476 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQY5-1", "protein_name": "Olfactory receptor", "gene_name": "Or4k38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSNRTVSSEFIFQGLCSSRQLEIFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFIDFCLSSVTTPKLTIDLLKENKTISFVGYMRQIVCVHFFAGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQKCIWLVVISWIVGFVHAISQMLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATTCFILLLISYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVSITWVDKFLAVFYSVITPLLNPAIYTLRNKDIKNAIKKLISHK", "length": 305 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TR72-1", "protein_name": "Olfactory receptor", "gene_name": "Or8k25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKYNLTIVTEFILVGITNHHEFQVPLFGLYLIIYLTSLVDNLGMIILTIVDSRLQTPMYFFLRHLATTDLGYSTAVGPKMLRNFLVDQNIISFYACAIQSSFFGMFIVCEFFILSAMSYDRYVAICKPLLYTVIMSQKACWILVTIPYLYSIIVSLLVNIKIFTLSFCGYNVISHFYCDALPLLTLACSNTHEIEAIILIFSAFNLLSSLLIVIGSYLLILMAILRINSAEGKWKAFSTCGSHLTVVIVFYGTLIFMYLQPTFTHSIDTGKVISIFYTQVIPMLNPLTYSLRNKDVKDVLKKPMEKVHNLFS", "length": 313 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSF0-1", "protein_name": "Desmoglein-1-gamma", "gene_name": "Dsg1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFTINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEENTLHSQLLQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAVKNLQLCIGVRNVAEFHQSIISQYRLTVTLITVTVLNVVKGCVFQPGSKTFIVDSRMEANHTVGEFLATDCETGQATNKFKNVRYRYVMGNNPENLLVVDSGIITLRNRVTMEQYERLNKRYEGTVLSIHDSLQRTCTGTIIMVLCGFWTTTEHPTTSTEKPVTLSITPNVDNVHFGPAGIGLLIMGFLVLGLVPFLLISCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPGGITTICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICPQHMEQLASGHPSISPHFGKTTVISENAYPSGPGVQHPMLIPDPLGYGNITVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVGPISGADLHGMLEIPALRDGTNVIVTERVIAPGSSLPNSLTIPNPRETSNVVVTERVIQPTSGMIGNLSIPP", "length": 911 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q803M0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3B", "gene_name": "ppp1r3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPIELAMSLYLSSDEFLNPRASKYSRPLQPCLNQCKSSKLSFSSLKEQSEFNGVSRALMIPGRAKKHVSFADHKGLALTVVKIFSEFDDPIDIPDNIDNFFTSSLTVSEGKDKLTLDFDQPSADYLKFRQRIENDHVCLEHCMLKEKSIMGTVKVKNISFEKSVKLRITFNTWKNHTDVECQYVKDTYTGSNRDTFSFEASLPEQVPSHERIEFAICYEVNGDTLWDNNQGKNYRIIQSALRKSSNESNGGHQQYSQSDWDIHFDRYGSPRCSRGIFPHWPSYVGYEDIGPYY", "length": 293 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80SW5-1", "protein_name": "Embryonic testis differentiation protein", "gene_name": "Etd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEKNPEAVPRPPEQNTELVPPKKSKSKKPANILIYLIDRHLGRPRNDMDLFEWVWTLK", "length": 59 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VJ6-1", "protein_name": "Zinc finger and SCAN domain containing protein 4C", "gene_name": "Zscan4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSENDPREVPGLQSRQEQPISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VT8-1", "protein_name": "S100 calcium-binding protein, ventral prostate", "gene_name": "S100vp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSTEQEIMELLMILQEFSVKKIDKLDVQEVKRLFREELPNFLKAMDEATKNKILNDKGKEMPFDEIWDMIGRMALEYRKKNSNALKD", "length": 92 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80XZ1-1", "protein_name": "Polypyrimidine tract-binding protein", "gene_name": "Smptb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRNSPPAAEGNGSKRFKGDSWGTRDPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYTWMPPVLRGQPVHIQFAHYRELKVSSSPSQEISLSQAGDSREATASSLVAVPGQAAASGQTAVPSQLGAQPCLPPEDSYQAGTVALAPPASAVDTELVVAWQSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASALPAPAMSSASPYASIALPHTFAIPQAAGLANPEVFKTLHPQAIQEVAMASSSSSSSTAAAAVGAAEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYGKALCILLSKHQSVKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSRMTI", "length": 588 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q810J1-1", "protein_name": "Pregnancy-specific glycoprotein 22", "gene_name": "Psg22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVSSELLSNGWTSWQRVLLTASLLTCWLLPITAGVTIESVPPKLVEGENVLLRVDNLPENLRVFVWYRGVTDMSLGIALYSLDYSTSVTGPKHSGRETLYRNGSLWIQNVTREDTGYYTLQTISKNGKVVSNTSIFLQVNSSLFICGRPSPPALLTIESVPASVAEGGSVLLLVHSLPDNLQSLLWYKGLTVFNKVEIARHRTVKNSSEMGPAYSGREIVYSNGSLLLQNVTWEDTGFYTLQIVNRYWKMELAHIYLQVDTSLSSCCDDFNSVQLRINPVPPHAAEGERVLLQVHNLPEDVQTFLWYKGVYSTQSFKITEYSIVTESLINGYAHSGREILFINGSLLLQDVTEKDSGFYTLVTIDSNVKVETAHVQVNVNKLVTQPVMRVTDSTVRIQGSVVFTCFSDNTGVSIRWLFNNQNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVRLTVMNE", "length": 475 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q863C3-1", "protein_name": "Gastrin-releasing peptide", "gene_name": "GRP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGREVPLVLLALVLCLAPRGWAAPVTAGRGGALAKMYTRGNHWAVGHLMGKKSVAESPQLHEEESLKEQLREYAQWEEATRNLLSLLQAKGARGHQMPPWEPLSIHQPAWDSEDVSNFKDTGPQHEGRNPQLN", "length": 134 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q869X2-1", "protein_name": "Probable polyketide synthase 17", "gene_name": "pks17", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTFNNIKDENNDDIAIIGMGFRFPGGGNNPYQFWNQLSNKMDGISKIPTEKWSRSFYEQKYINNEYGGVLKDEEWKNFDPLFFGISPKEAPIIDPQQRLLMTTLWEAFEDANIKPSTFRGSDTAVFIGMMNTDYQRCQFRDISYVNPYITPGTAGSFISNRLSFSFDLRGPSMTLDTACSSSLNAVYLGCQAIANGDSKMAIVGGVNGIFDPCFSMTFSGLNMLGHKGQCRSFDAGADGYIRSEGGGVCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNIIQPSMKAQGENIEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFEDWNIRVVTDEIQFPINKLINMGINCFGLSGSNCHMILSEAPINYDELLKTTNNNSTSSSSNDDKKEYLIPFSANCNISLDKYIEKLISNQSIYKDTILFKDFVKHQTISKSNLIKRKVITASDWDDFLNKRNETTSTSSLTSTISAPASSTPVIYVFTGQGPQWRDMGKALYETESVFKDAIDHCDKLLANYFGYSILQKLLSLESEDSPEIHHPILAQPSIFLIQVGLVALYKSFGISPSIVVGHSFGEIPSALFSDVISLETAVKIVYYRGLAQNLTMGTGRLLSIGIGADAYLEKCALLYPEIEIACYNDPNSIVITGSEQDLLGAKSTLSAEGVFCAFLGTPCSFHSSKQEMIKEKIFKDLSDLPESNVPCVPFFSTITGSQLSHKGFYNVQYIYDNLRMPVEFTKAISNIFNFIEENESYKNAIFLEIGPHPTLGFYIPKCKPSNSTITSKPIIVSPLHKKKEELTQFKLAISTLYCNGVEIDFASGQQLLPTSSSSGGGDISSFKESTNKLPRYQWDFEEYWDEPNQSKMVKRGPSNNLLGHDQFAGNTLMELFIDIDKSAHQYLKGHKIKGKYLFPGSGYIDNILRQFNGQDITIFNLEFSNPFFLKDGVQHHLQTSITPTTKGEFKVEFFIKDNRNSTKWTKTSNGRIGLFKHNPKNNKLDIEKLKSQCSFTTLTKSEVYNKLLLLSLPYGPTFQRVESCSIGDGCSFFKLSMSPCSEFDKDFLNPSIIDCAFHGLLVLSEGPQEIVFDRLQDMKFYSSNVPSTRPQFIYAFAKFDKIEGNSTHGSLNIILEDGTLLISIKNVKCTSLIRLKKQSIKYPSQNVYSHHWQSKDSPLTLIENQLIEEKSSESKINFEKLLNDKLFNYYLIRLLNQSIKSEFIEFDYKTSTVDTLDIGSKNAKLLEKIQSILNPIDSLDQSIDITSLKQAIIVKSSFKNEIKLVEKSIKRIVSLLKGGESEHFSPSNPSSPNDTPRNNSNNCSSKNNAASSDDADDDTNNEETINQLNNEPFNFSNSQFISNQNQLISKTIVNSFDRLINSIEIGEKKLIKIIDLSSIYQNYQLSKLLLLQLNQLLINLSNNNNIEIEYTIPSNTKNIDSITEETKSISNVLNIKYRSFDLQDDLESNGYLNSNYDLIITSLLLVSTNSIDSNEVLSKLYKLLLPKGQLILMEPPKGVLSFNLLFANDFKQSLEIKSEQEIKSLIIYCGFTKIETNLNTKDDEEQQQPPPPSILIVQAEKRDIESMSLTFSSDPKSLNSSYSNCIFIVSKEQKENPTSYIQEYFDITEFFCQNATIIEADDSELLTKTIESGVGKNDIIFFLVSLEELTIENYKQVTMQYTLVNQILLRNNLSTRFALLTYDSQNGGKNYLGSSLIGTFRYFLEFRSLNIFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPSNNYEKNTNNLFLYSNSNLDFSFQSKEKLLHGCVEIKVMSTGINYKDSLFYRGLLPQEVFSKGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSHVTTHQNKIVLKPENISFNEAAAVCVVYATSYYSIFHIGAFIADKESILVHSATGGVGLASLNLLKWKRNQLKKHGNSEISNDASIYATVGSKEKIDYLQEKYGDLITAIYNSRDTEYCDEIKQQSAQGGVDLILNTLSGDYLSSNFRSLSQVGRIMDLSVTQLVENDSLDFSNFKYHVGYNTIDLDRATKYNSKIIRDILTEVFDAISDGSLENIPVKVFPAIQVKTAIEYINERVHIGKIVVDFENFEQDILKPALQEKENPIQLNKVKKLEHTCDTLNNTILITGQTGIAVHILKWIISGSVLNSNKSQQQVTDFIILSRSSLKWELENLINQTKHKYGDRFRFHYKSVNIADLNSTRTAIDQVYSSCKNVSPIKSVLHFATVYEYILPENITQTVIDNTHNPKAVGAINLHNLSIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGGLDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLSSFNIDNLLSSAPQMKRKMDHHLTNYKTSSASSDDSLGDSGSTQAKVISTISELLSIHPSKLNLDTRLKDYGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTSKQTATKKT", "length": 2604 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q869Z5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPHVYHKIDFSKNEQFDPEFLKFSPNNKIPAIVDNTVEPNGISVFESAAILMYLSEKHQFTDLYADFKTDPALHAKHLEFLFFQMSGVGPMTGQLGWFLRQPEPKNTQAIERYSEEVKRLYRVLDKILSTNTWVAGEQYSIADISLLGWALYFLKGYYDDHITREQFPNVYRWLDLAAKRPAIIKVLETIQPKQK", "length": 227 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AE3-1", "protein_name": "Probable polyketide synthase 9/36", "gene_name": "pks9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLKNINLKEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFKEWKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHTNKHQDSVLKNAIAQSTSAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVDIIKAYSILSMLSKTHGKCKTFDESGDGFTRGECVGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNFLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTTMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNEIVFIEIAPHPTLLFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQSINLPLYQWDEELYFTQAQTLEQHRKEGPPIDHLGTSNSYNSPFNNSYRTSIDIKNKPFLYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPPKYNIKEIIENKCNLSKLTKNELYTHIKSKTGLNYTGVFQGVTECYIGGDCTLSVVSLESQTNSFLNIPILDTCLHGMIGLSNDQCQIVFDKAIGFKYYSSNIPANLKDYKDSVYVYSHLKSKSVDSFFGSIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNEVIIKSSRIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCRYLRKKNQMISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIIALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGFNVIYRPLKIDESLIETQSINPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCSMSQQSWCQLLKTCNFKDIAMSKECIFVGIVIHAQKPPISLLNSQPKRDNIIIYGGGNPIFVENIKLYSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNFKQITLEYIEINRKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLNTLDFDYDSTQNYINSNNKDMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNYKKIQIKPSNLSHNEASSIPIDYLTSFMSLFNIGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFNSNLFVTVNSYETKRYLQDNYGDFITGIYSNTDKSYVTEINKKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLAKYGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFELSLIQKNKIHKCLYEISNAFENGELKTIPIKEFTNLNIKDAIKYITNNKIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILVTGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINETKLSNNNIKFHFKSVDIGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYVCANALLDSFSKYRESLGLPSTCICLGAIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNAGKFTNSMLSNFKPSKFKNNQQTSLFLKFDYLMNLKNNSEETKIENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTISTSMKMILNSLMKNNQNIDDNNKDLPSNRIDYWKNEMKFEESIKPISNEIQSRNNSEKIILLTGTTGFLGGFLLFNMVRLDSCKLIYCLIRNKSKSNNPLDEIINNLKYHQLYEKLNQSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKKYNIPSILIRPPSIFLNPETGIGHISDFSLLSIQSCYELGYYPNQFENDFILINTITWLSNNITNIIMNDNCWTDSKMNIYNVHGKQIQSSLIIKPLEKHFNCKHINTNDWIDMVNNSNKKSCIKLKSFHSLDIILKSENNRYKPNENQSISLSTKSLLESMGSYNTDLEITDKMIISHINQIFNLNETI", "length": 2931 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AF8-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSKFSIKENKPKKVKSNSSKGFNNNEINSTNNNNNNNNNNNNNNNDSDNFINNNDSNNNNNFNNNNNNNSNNINNKTEDSNDISLLINQFIGSSPAPSTCSGSDKFSIKPKKIVTPSKRKNSTSGSDIIDFNNCNNNNNSKSNSDSNNNKYNNSNSNNNSCNNTNNGNERKMKGYDYGNNNSNNNYSSSSRDYNSNNNSSPRDYNNNNNNNNNNNNNNNNNSNNNSPRDYNNSRDYNNNNTNNNSSPRDSNSNNNRNSSSRDFSNNNSSPRDYNNSRNSNNSFLNNNNNNNNNSNNSNDNSPRDYNYSSSNSSPRDYNNNNDTFSKKRNNVGNSILEIKSNPTSPRIKPIMVWPRSSPRIVNKLPPVQSLVDLTEIEMIDDNNNNNNNNNNNNNNNNNNNNNNNSNNNNNKSGSNNNFSDSDSDKDNYNNNNNTNNNSFNSDSDNYNNSNNNNSNSNSNSNSNSNSNSNNNNNNNNNSNNNNNNNNNNNSNNSNKSNNNFSNIKILEKRRKSINEISDNLTTRNIEEIDSKMAHEFEHPFLEKLIFAGQRPPFVECDDYFLKRYKNQFQYYLDISMKSIINTRDIGEGDDDDEINSVPFKCTLCSYEYDEENNNENTNGFIDEADKIYNRSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNNNNNNNFYDKKYFKNNYFQHLLSKHLNQIKAKGIQDTNVYNDEANIPLGSKKCDHLECSEIILKNEFTKHIKKLHHHHKDEDIDICPRCKILKKSIQKRIVKFSKKKQEKDDDNNSKPVSNKVATISHNPSPNNIDKDINNNNNNKNNKNNTNNLENDNNDNSSNNNYLENEEEPEIVFQDIKPNNNNNNNNNNNNNDDNNNDNNDNNDNENNNDNNNDNENSNNNNNNS", "length": 901 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86BK9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "Dmel\\CG32971", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQELNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAMHAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV", "length": 145 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86IJ5-1", "protein_name": "Uncharacterized protein DDB_G0272718", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPPHGHHHHHHGHHGHHEHITITPVYAPPQVVQPIYAPPPVVQPVYVQPPVVYPQATIVLETGHHHGHHHHHGHHGHHDHHHHGHHGHH", "length": 89 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86IV6-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFFEKKNNNNNNSSNNNNNNNNNKNNNNKNLDKNNSSDRNNNNNGDKNNLKPTQKSLIDLWFQVDDEDEEYELSSLSNDGGSSFNSFKVNNRDTSIGSDIYSKTITPSSLALSTSSLISSTLTPPTQSPPFSKKNEKTSSFLNSPSSQKSKSNNSNVKEKLSPQYSSSSQLSDFFKKKKRPLLDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTISSLNTNSNNNSSGSSNGSSSSSSGGGNKSSNNKKQKVSQSTSSTSLKEKQSQQSILSYLNPTPSLPTPIFDKPIERSDSNLATSSFSKLNFDDIPLDDEELSQKINTPSPKLILKNTFSSTPTQKSPSLSSTPPNKIKITDKKLPNSSSSSSSPPPSSAKSKLSHRSQSSPLSPLITNLNQNKSNEFDDINFNFNIPSPLKEINNKPNIKSNSKETLTPLTQIFHSSSPPPSIIIESSPSVCFSPTPTKNQSPTLSNLSPTFSFLSDTSPVKSPSQLFEFTFDDPLSPKLISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTFISKNNLINLFNEQSNQENVSTTTTTTTTTTTSTSTNNNNNNRYERVLIINVFYEVTQIFNNSNDKIHKKTLSGFSESIGESREIQLLDEWIYTPVRPGDIVNVIGEFDDNGEIIINNIQNLLILHPDILITGTELGGSLTCTRRSVLKEQIRVGNSNSSTVPIFGSIVHEIFQECLKNNRFHLDDINTFKQEIIGKSTFQLGLSSLGETQDTALNHLENWLPTIDKFAKTFILPSSSSSSASSLKKNLIEINSEKWHLSISKILEIEENIWSLMYGLKGKIDSSLEIKLVKQQQDEKQSKQSKQSKKKKQQTTSPNNNNNNNNNNNNNNNNNNNNNNNNNNGPTTCYLNVPFEIKTGKPYQIPYISHSSQVLIYTLLMNDRYDQDIEMGILYYLKSQEFKSVGLNYGLLHPILFERNQIRSLIVSRNLLAYFLNLNSQPLLKPNPILPEMLRDYHSCTKCYSIDPCVLYHKAIENGDQFTSSLGDLFLEKTNHLSSIHINYLKNWNKIISLEYSIKNNKRKLIWNKSRKFGEKNNSCIGELILISEEYSEITETFSYRFRVNPDKLLNSSISEGDYLLISVEDKYYGMGSGQLSNIINDIITITCREKLSEPPSLLSDYTTPNCNNNDPSYFGNYRNKPLIYIEYEDADQQQQQQQQQQQQQQQQQQQQQQQSQKQQKQKQPNFTQLRGLNNYVNNSKLTPFKWRVDIDEQLSGLSIVKSNLFNLFLKENQKLRSLIVDLEAPIFDKLEQENYWKSIDFQNDYPLLNIDQRNAIIKTLSAKDYSLIHGMPGTGKTTLVISLIHILWRLGKKVLITSFTHTSLDHLLLKFNKQYPNIEMLRVASSLNQIDPSLHRFTLEKQSFGNITQSKQYLERQQLVATSCLGINHQCLLKMQFDYCIIDEASILSQPISMGPILKCKSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCGNQSISNLSLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESSNGDLFYNQTEANIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSILKYLSIENNNNNNNNNNNSNNNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNNNQNYLKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFVGSKSSLSKFPFFLDFFEFLDSKNWIYNLNNKIQF", "length": 1838 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86JI5-1", "protein_name": "Probable polyketide synthase 5", "gene_name": "pks5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDMKLNDIENENFINQMKGVAIVGIGFRIPSGNSENSISSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSDAHHIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHANKHPDLILKNAIGFSPSTLSNRISYCFDIHGPSLSIDTACSSSMNAVTQGYHSILNGTSNMSIVGGVNFVIDVETIKGFSYLNMLSKTHGKCKAFDESGDGFTRGECAGVVVLKKLDDAIRDGNRIYCIINGISSNIDGNGIADKANFYSPSKQSQFNNINLAFKSTNGKISVNDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVVSLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRNNEKSVSMMINNFGVTGSNCCLLISEFKKQDYESYENNIGSINKNILVPFSANSPKSLDQYQSKIKNIINNQFNFIDFANNQIYSKSNYLYQRSVVIANNSNDLVNKILNKKHIQTKNPIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGYSVLEKLRSIGDDDTTSIHDPTIAQPAMCMFSVSLFELYKHWGVNPSFILGHSLGEIPTSYCSGMIDLDTFCYTVYQRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESKKSKVPTFSTVTTNLFNESDPFNSQYVYDNIINPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQKINLPLYQWDDELYFAQTQVLEQHRKEGPPIDHLGLSNSYYSPFKNSYRTFIDIKNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHTIEMPPKYNIEEIIKNKCTLARLTKNEIYTHIKSKTGLNYTAMFQGATECYIGVDCTLSVVSIESQTNSFLNIPILDSVFHGNISLINDQCQIVFDKVHGLKYYSSNIPNDYKDKSVYVYAKLKSKTSDSYSASFTVLLSDGTVVYEIDEAFSKSLIPIKELLKIEYPNDELFSINLQPKDSPIPAPSTFKSLIYENDRFNAEPPMVENLFQYISTIFYKNIINRCPEINIDIIKSLSIDEIISNFSKISKHERLFKYVFETIKENGILNSLEEKDDTYFVFNEVLIKSSRVISKLLFPLENDNDNEDTPQLLFQNGLMDKVYKCRYLKNKNQMIAHIIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIVDTKNKINKIIKGAGITNGLNVIYHPLTIDESLVELQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLIPNGQLLFVEPPYKSIICDSLFGSFEQWWAFTDTDIRKDHCCLSQDGWYKLLKWSNFESIEMSTESKFMGSVIQAQKPSFTSLINQQPKYDNIIIFGNNCPNFIDNIKPFSNFNEFIQIETIQEFDQLINKSTITNDSIIYFIKSINQLSLDNYKQATLEYIEINQKLLQINSLCKHVLIVNDSRKTNYLASSIVGAARYFDEFQQLKLHTLDFDYDSTQNYLISKNNKMVQFINNLIDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFEQQDNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDEIKQYLLNNYGDLITAIYSNTDKGYVSQIKNKLIEQGSNDNGVDLILNTLPSDFMDSNFQLLAINGRIIDLSNDHLNQSEYMKNVNFTLNRGYHNFDLMSQRNSRINRSLLTISKAIENGELKLIPIKEFSNSDINDAIEFIIEENRIDKIVVSHDHEVYQELYAKFSNENDFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQEIINIHSIFHFAFTQIACKVQEINMKHLDISHGAKTMGAINLHNQSIKRNWKLINFVISSSIASLVGSTDQCSYVCANALLDSFSKYRVSLGLPSTSINLGAIESTGFVSKNESISVFLDGSGIIPTPINQVLGLLDLQIQNPGKFTNSMVAKFNPLNFSNNEQINLLLKMDYIFNLHSNGYTKVKESAGSKNVDELFIKKISDLFSIDESKINKDIRLIDYGADSLVIVQLKNWVDQEIGFNLITIQQLQNNTINVSIKIILNFLKKINK", "length": 2512 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KS1-1", "protein_name": "DNA cross-link repair 1 protein", "gene_name": "dclre1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDDEDDINLYITRSKNNENKKTNKNRLIDNNIQKTKTTTAVLTTRTTTTTTTTTASTQLKWDYGDEDDDDYSAPKDIDEEQSSKQFNYQNNQIVVKQDHDDYSAPKDMDEEQSSRQFNYQNDQTLVKQDDDHDDYNEPKDIDSQSLIDEDCDFEFDNSDFFFDDGTTNNNDNNNKNNKNNNNNNNNNNNNNNYNNNNNKNYKRKYYQSYNNSNNINNNNNNNNDKFEKRLSDLKKTGKEEAKKRGYQVRKTPTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIVRKENDGETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDINKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRGPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDSPIKVKNILAHFSDLYEKKKQLTIASFFSAQPVTNFFQSFFKSKSEPIIDEDNKKLIPITTTTTTNINTLTATDTTTTKIKTSNTLIKDEFTDDLIWDCSDDLISDRKLLTQSDNSSALCKIEKEENFNDLSENNNNSNNNNNNNNNNNNNNNNNNNNNNNNNKLIIENDIKEEIIDFDDPVFISQQKWIEKQIYNNNNNSNNNNFTTPTKTNGNLSNNAKLNLTPTQTQTQTPTQNNKKQKTTNVSPTSYNSNNSSQQSGLKRSKSDPNVKKNQLQTSQPPSQSLITSFFQKCASPTSLFSATPPTPSITTTSNQSTKNKNSTTTTSTSTSNNKPFKN", "length": 920 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KX6-1", "protein_name": "TNF receptor-associated factor family protein DDB_G0272348", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFELEDITIEQSSFTNNNSNNNNNNNNNSNSNNNNNNNNNNINNNNNHNNNNKNNSNNKNEINNQLDIPISNLVVDKENISKKYFCTICSDLLVNSFHADKFKAVQCKNGHYTTCLNCWEKHLEKKKNCIQCGVDVESIESLSSNLLVTQKFTTFKIHCPNSFFDTIDFIKDEVNGCKEIIQINELEEHLKECQYGFISCKNCEEFSKLPFQEFTQCPDFRKNTKEQHDLICPYVKISCEYCGDIINKINKESHNANWCQEITIKCLDCHLPFKKKEINQHQKSFCPETIIQCRYSKGGCNAMIRRSKLSQHLTEGDNHHQFISNILNQQDLKINELELKNTEFCLLLNGQNKKITELEILFKELNDSILIQKQQQKQQQQQQQQQQQQQQQQQQQQQSQQQQSQQQQQSQQQQQSQQSQQNNNSNSHFINNNNNNINNVQMSDSPNGGSLPQAVYKNKWVISNYSEQEQQGISKDYIKSPLFKIGNSTFFLKWFPFGKKKLNYCSIFLYKTQDDKSIIVNYYIHLVNNQISDEVYEKRGCQKYDSENGSAGYGSSQFIKRADLLNDANGFLINDSITIEIEIFATEEILPLQS", "length": 595 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BI41-1", "protein_name": "Syncytin-B", "gene_name": "Synb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGFWVLCFVLFPSSLSYPESWMPLVNLTHHILRDTNSSLFSNCWVCLSTQTQRSLAVPAPLSIWTDTPMKLHLTYSVRPFSGSFSISDIERRLRLFRPLTASYSFHNPDRRAIAFLQLVSSTGIFRIITRITSVIYPHKDRFFESAQRPLWGPLFTETVLRSQAPLCISRFFKVSAYATFVGNLSASLCNYTMHISPSTSHENLDLSTTHTFKQAMKRPDAKWKNPLRFSGPPSLIFSKPAYYPCPTDIKHCHTSPATPWMHCPQAPFGTCYNLTLFEPDNSTHPVTMSVNPTHFKVKLQGHRDPYPLSHYQPLTGAALSGQYSVWENEITVQENWDITSNIFSHLLSFSYAFCLNSSGVFFLCGTSTYICLPANWSGVCTLVFQYPDIELLPNNQTVPVPLFASVLSSDSVLRPKRSPHLFPFLAGLGISSALGTGIAGLATSTLYFQQLSKVLSETLEEIAASITTLQNQIDSLAGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGIVRDAARKLQERASELGQHSDSWGQWPDLGRWLPWLTPFLGPLLFLFFLLTFGSCLLNCLTRFVSQRLGSFVQDTAKRHVDSILQNFQYKKLPQDSPDEDTIPT", "length": 618 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BYG0-1", "protein_name": "Tetratricopeptide repeat protein 24", "gene_name": "Ttc24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSSRQYGLSDVLRALEESRKLADADRSTDQGLLGPFYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPSEQATVLQNLGMTHNVLGNYWEAQEFHQKAASLHGSVGQRWEQGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGAAAARLGQHDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQEKIAQARFLPSAPGKLQTSRKAKTSARVQSSAEDAQESQWEGEASEGGHEKKEMEGLVNTATVLGPQRQNRATTHLPSGGPSPSGEEYPFIIAPKKLRVSRSSTWAKEALGRNFQRTRIQSGLCSIM", "length": 334 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1N8-1", "protein_name": "Alpha-defensin 22", "gene_name": "Defa22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKLVLLSALVLLAYQVQTDPIQNTDEETNTEEQPGEEDQAVSVSFGGQEGSALHEKLSRDLICLCRKRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1P2-1", "protein_name": "Alpha-defensin 21", "gene_name": "Defa21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALILLAYQVQTDPIQNTDEETNTEEQPGEDDQAVSVSFGGQEGSALHEKLSRDLICLCRNRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5Y2-1", "protein_name": "Mitochondrial sheath formation-associated protein", "gene_name": "Misfa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVLGWMLFVGLATYMGTFPEAMPPTLKWKERLPGQENKARRRIQALEEELLL", "length": 53 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDW1-1", "protein_name": "Protein FAM228A", "gene_name": "Fam228a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADTKTSKCDEHFSVEKLKEWPEPESVSLMELLAREDIDEAVHAVLFRENYVVKRLDTYLQHLAVFKERRKEMLHKKWVENVVQPLQQRITDKITSYRRPGKNQVKYEHCLKQTNKPTKVSSSCLFQKQQEFREAKGTSYQHGRGKTHDTQKEAKETEKGLSFTPFSLRPHCSSPRERQRASARLMQSKPGGRNRYKGASSEKPVFTLKSHLPKEEKTVSRSQLVFERQFRASRLSQDIKEAEKKGLVVGTGPQRPRSWAAADSVPRPSLVGRRVMTAEILGEHLVSLHQAARSGLQWP", "length": 299 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CEK3-1", "protein_name": "Serine protease inhibitor kazal-like protein, minor form", "gene_name": "Spinkl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSTWIKFLFILTLVLLPYSVFSVNIFAGPENVIKEPNCTMYKSKSECSNIAENPVCADDRNTYYNECYFCIEKVVEKLKYRYHGICIYK", "length": 90 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZP1-1", "protein_name": "TBC1 domain family member 3", "gene_name": "TBC1D3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K072-1", "protein_name": "Receptor expression-enhancing protein 4", "gene_name": "Reep4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSWMICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPFYYEFKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGKRSLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSIPDTPVPTYQDPLYLEDQVPRRRPPIGYRPGGLQGSDTEDECWSDNEIVPQPPVRPREKPLGRSQSLRVVKRKPLTREGTSRSLKVRTRKKAMPSDMDS", "length": 257 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8MP30-1", "protein_name": "Uncharacterized histidine-rich protein DDB_G0274557", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKYFLVLLVGFLLVLPSIVNPYRKGVTITNQQPKINIYQLDVNNPHNPNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNPHPHPHPHPHHHHHHQEASECLSYQGNRNRLFIKRDY", "length": 233 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NG83-1", "protein_name": "Olfactory receptor 2M3", "gene_name": "OR2M3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARENSTFNSDFILLGIFNHSPTHTFLFFLVLAIFSVAFMGNSVMVLLIYLDTQLHTPMYLLLSQLSLMDLMLICTTVPKMAFNYLSGSKSISMAGCATQIFFYTSLLGSECFLLAVMAYDRYTAICHPLRYTNLMSPKICGLMTAFSWILGSTDGIIDVVATFSFSYCGSREIAHFFCDFPSLLILSCSDTSIFEKILFICCIVMIVFPVAIIIASYARVILAVIHMGSGEGRRKAFTTCSSHLLVVGMYYGAALFMYIRPTSDRSPTQDKMVSVFYTILTPMLNPLIYSLRNKEVTRAFMKILGKGKSGE", "length": 312 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8NGV6-1", "protein_name": "Olfactory receptor 5H6", "gene_name": "OR5H6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLYLCFIFQRTCSEEMEEENATLLTEFVLTGFLHQPDCKIPLFLAFLVIYLITIMGNLGLIVLIWKDPHLHIPMYLFLGSLAFVDASLSSTVTPKMLINFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLYPVIMTNELCIQLLVLSFIGGLLHALIHEAFSFRLTFCNSNIIQHFYCDIIPLLKISCTDSSINFLMVFIFAGSVQVFTIGTILISYTIILFTILEKKSIKGIRKAVSTCGAHLLSVSLYYGPLTFKYLGSASPQADDQDMMESLFYTVIVPLLNPMIYSLRNKQVIASFTKMFKSNV", "length": 325 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R264-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r215", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNWNNIIHTIIFLSLTGPGIVGNMLIFIRHIYMPALGTEKKPVDLIVIHLAFSNMITICTTGIKDIATVFYFRNFLGDIGCKAVVFLARMARGLSICTTCLLSVVQAITISPRTSLWTKLKPQTACQIIPFILVFWIFNGLISSNLLSYIKGGSSLNRSVAATFIGHCYMLQSRHTIKWIFLSLMTLRDVIFQSLMGWSSGSMALNLYKHHKRVLYLYSSRFANNSPPEIRATWSVLILMTCFLLFYWADFILSFYHGFTVTHESILLNIKVFLELGYVSFSPYVLISRYIHPPNVFHAH", "length": 300 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R272-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLQFIKKTIFLFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLTFTNIILLLAKGLQKTIIVFGLRNFLDDIGCKIIVYLERVARGLSICTSSVLTVVQAIIISPRASGWRRLRPKSAWHILPFFSFFWILNAFISVNLIHSIRSKGMNTSQHKNSDDYCYLTPESQKIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQHVLYLQNSKLLYRTPPELRAAQSVLLLMLCFLFFYWTDCALSLFLSLSLGDSSLMINIQGFLTLGYAIFSPFVLIQRDGLIPVCWHAQ", "length": 298 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R278-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r213", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLALRNYIQINTPWCMCLFVTPLTPCLPEYWDPDSLRVEGPTESSLRHNTASCTLKNTIMQNVQFRSMSSITDAFFKMYLHTRKEEMILKILKEITFLIMTVLGILGNMSVSVNYMFSWWGSPEKKPIHLILIHLIFTNIIILLVKGLPKTIAAFGLRNFLDDIGCKIIVYMERLARGLSICTSSLLTVVQAIIISPRASGWRRLRLKSAWHILLFFLFFWILNALISVNLIHSTTNTRLNVSQLKSDDNYCYFMLPIQKIKWIVLPLMVVRDAVFQGAMGGASGYVAFLLHKHHQHVLYFQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLFLTLSSEVNILMVNTRDFLTLGYATFSPFVLIHRDGLLVECRHVQ", "length": 384 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2A9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r229", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFGNLAMGIVLSLQSALGILGNFSLLFYYLVLYNKERTLKIIDIILIHVFTSNSLIIFSKGLPEVLAVFGWNDLFDDVGCKLIMYVRRVSRSMSISMTCLLSVFQAITISTRNSCWKEFKEQTAKFMGLFISLCWILFMLVNMLFPVYTSTNRNSKNKTQKKDIEFCHSVGRDKMVDIMYTAFCVFPEVLFSLLIVSSSTTMIVILYGHKKRVQHILHTHASPRTSAENRATQTILILVCTFLAFYTLSSVLQGYVALSHDPSWWVMNITTIISMGFPAIGPFVMSRDFTVSRFCFTCIGNLKLP", "length": 306 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r178", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHDKSLKTTDDMTLQILLLCQFVVGTVANVFLFLHNISPVLTGSKQRPRQLILSHMSVANALILFLTSFPDMMAFAPRNSPTHLKCKLEYFSRLVARSTNMCSTCVLSIHQFVTLVPVNRGKAILRASVPNLTSYSCYSCWFFSVLSNIYIAIKVTGPQITDNNTDSKSKLFCFTSGFSVGIFFLRIFHDGTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNFICIIFYTFSIDSRLFMSHFSKVFAAGFPTISPLLLIFRDPKYPCSVLFNC", "length": 304 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r64", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKTLKTMEVLALQILLLCQVVVGTVGNIFLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLFAYSYDLIDFVPRKPPTDLKCKLAYFFNMVAQGTIMCSTCLLSTYQFVTLVPGNWARVMFREISPKVVSYCCYSCWLFSVLNNAYMPMYVSGPQKTHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFIGIMAWTSVSMVIHLNRHHHRMHYLHNPNQINRGHAETKAAHTIMMLVVTFVSLYILDCICSLFHISFVESRLWLIDVIELLHLSFPTVSPFLLICRDPMGPCSLLFIVGLEIHVTVGAITEEQ", "length": 320 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDFVPRKPPTDLKCKLAYFFHMVAQGTIMCSTCVLSTYQFVTVVPGTWARVMFREISPKVVSYSCFSCWLFSVLHNAYIPMNVSGPQKTHNDSDSKGNSICSISGVNVDMHFLRFSHDIIFLGIMAWTSVSMMIHLNRHHQRMNRIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFHISFVESRLWSRHVIKVLALSFPTISPLLLIFRDPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2C0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALQILLLCHVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLTDIVPRKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLNNAYMLMNVSGPQKSHNDSDSKSNSICSISGVSVDMNILRFSHDIIFLSIMAWTSVSMVIHLHRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFYISFVESRLWLRYVTKLLALSFPTISPLLLIFRDSKGHCSLHIMSVWKST", "length": 300 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R4R9-1", "protein_name": "Protein phosphatase 1 regulatory subunit 14C", "gene_name": "Ppp1r14c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVVTGGGEAAGGTSGGGARVFFQSPRGGTGGSRESSSHSGSSREDSAPVATVAAAGQVQQQQRRHQQGKVTVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPDVEIDIDDLLDADSEEERASKLQEALVDCYKPTEEFIRELLSRIRGMRKLSPPQKKSV", "length": 164 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R4V1-1", "protein_name": "NFAT activation molecule 1", "gene_name": "Nfam1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESWLLRRGARVRCLHPPSWLPAWCFLCLLPVPQTLQLTGLVSLTHTSLPIMVSLANTDVFFSCRIEDFTRLQRDLPVKLFHTDIHGRRRWEKQINCQHRPGMENHTRDCMVKLSQANTSATGIYYFIVEGEETYQSDGVVILVRDTVYQPPAFKVQEALMLGFTSLMSVLGVLGTALLLWKKKQISVLGKHTAKTCSGLKSTVGTTKPPAESVYTSLQRRETEVYACMKEETGSPVFSQSPATKEKLNRFEDDNEFNLVYENL", "length": 264 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T277-1", "protein_name": "5'-AMP-activated protein kinase subunit gamma", "gene_name": "prkag", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWYPGDEDEEFTSIIENIEKKETQEIKIKTEKLRQASLNQLPIEQSEGVGGGELSEYNNNTTNNNTPTNTTTTTNTNTTTMNNSNNNNERILSTSNGFDIRLPPNSIEQPSPSFISSSQDGVLTVDPLAVDGEKGNKESQSPPNGDNQILNNNNMFFKDITSLPSTDNKSSTNTNNNNNENPLKQTISSSPSKSTTTTTTSTSTTTTPSLSSLSSNNNNNSNSNNNYINHSSISTVSEGLENLNLKSGIKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISVERPSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNSILHILTHSRILAFMMKSFPQLPEKLLSIPIGSLGIGTFATVVTVMTHTPLVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLNLPVHQVLSTFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDSSKKVEGILSLSDILNYLLNDVKSINH", "length": 577 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VEU4-1", "protein_name": "Olfactory receptor", "gene_name": "Or14j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVENITTMRGFLLMGFSDNHELQILQALLFLVTYLLGSAGNVIIITITTLDPQLQSPMYYFLKHLSILDLSSLSVTVPQYVDICLTQSGYISYAQCMLQIFFFTGFAWGEVAILTVMSYDRYVAVCLPLHYEVIMGPSKCRWAVTAVWLSSVIPGTLYIASIFSIRFCGDRIIHQFFCDVPQVLKFSCSDDYLVTVGVADFLSAVAFACFIGIVNSYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVLLFLSTGIFAYLNPTSDSPTALQFLVSIFYTVLPPTLNPVIYSLRNETIKSVIRKLLLSSKFTG", "length": 312 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VFX0-1", "protein_name": "Olfactory receptor", "gene_name": "Or5b101", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENRTEVRCFILVGLTNDPSLQLPLSITFLLIYIITLIGNLGLILMILLDSRLHTPMYIFLGNLSLVDFCYSSTVTPKVIAGFLTGDKIMSYNACASQMFFFANFGDVENYLLASMAYDRYVAVCKPLHYATTMTTHMCASLVIGCYICGFLSASIYTMDALSLSFCESNVIHHFFCDVLAVMIVSCSDSHVNELILIYVVSFNMFFALIIILISYMFIFTNILKIHSSAGYHKAVSTCASHFTAVSIFYGTIIFMYLQPSSSHTMDTDKIASVFYTMVICMLNPLVYSLRSKDVKSAFTKIVLRSK", "length": 307 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VY69-1", "protein_name": "Vesicle-associated membrane protein 723", "gene_name": "VAMP723", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK", "length": 217 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ67-1", "protein_name": "Uncharacterized zinc finger CCHC domain-containing protein At4g19190", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGEGEGSGIRLSKRFAGGKVTGGSLEVDYKTKSGTAWSHSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPESAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELKQKPGLSPPRGGFDPDDPNQQIVAEDIFDEYGGFLEGSIPIEILKSMSSDKKRKSKKNKRHKKHSSRTVEETDESSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRKHRYSTNRRRN", "length": 595 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q91V82-1", "protein_name": "Beta-defensin 8", "gene_name": "Defb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRIHYLLFTFLLVLLSPLAAFSQKINEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK", "length": 60 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q923B3-1", "protein_name": "Neurotrophin receptor-interacting factor 1", "gene_name": "Nrif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTLPTTWPHESVKFEDVSLTFTEEEWAQLDFQQKCLYREIMMENYSNMISVEHHFSKPNVISQLEKAEDCWPMQREIPQDTLPECSWPSPDPGMNSFPSKSPLMKIEVVEVLTLNKDVAGPRNALIQSLYPEDLNPGNLKPAQQPSKRLTDTEASRQKFRHFQYEESAGPQKAMSQLRKLCHQWLQPNTRSKKQILELLVLEQFLNALPEKFRVWVESQHPEDCKAVVALLENMTSVSKDDASLACSSEATDQLKEKRKGVATLPVTFAAEVPAEEPVTFQDVAVDFNEEEWRLLGPTQKTEYHDVMLETLGNLVSVGWEPTLGNRELTPDSPIPVVKPIHDPNTNDLSRNGTQSTVFESILEDGVKEMHSIESNQVGNLQEKGHPQKKFSESSKSQDQTSRHKSQGSLNEVLPRKYVKVKQKGTGKRKGRTNTISMTRGLRIRKQQKDSVEWQGRSGSTPVTHGSSIKKQQQGSEQGKPGTSRDPITLTVPAKVYQKATGSEESIFMDSSDAMVPDVPPKIHQKGPEWHKVGESNNSMLQGSSVQNHQMESGAGRASDNSLLTHALPVKSHQKGYKEGNVQGNRNSWKHIKPHQKGSKGERVEELSTSEKHVPYVKNHLKTSERGKDREINASIKCDPYIKTYYRGSDVGRLRRANNCRKAFSLHAQQISFIKIHKGSQVCRCSECGKLFRNARYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCERCGKAFRQSSHLTRHERTHTGERPYVCIKCGKAFTQSSHLIGHQKTHGIKFKKQPKL", "length": 828 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q924S2-1", "protein_name": "Inactive 2'-5' oligoadenylate synthetase 1C", "gene_name": "Oas1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENGLCSIQARELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTALKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGDFSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSNKNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDPADPTRNVAGSDLQAWDLLAKEAQTWMQSSCFRNCDMSFVPTWDLSPERQECAFQ", "length": 362 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925U0-1", "protein_name": "Oocyte-secreted protein 1", "gene_name": "Oosp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPFVGLLGLLLLLSFMKTCADDWTAISLQCADHWFHLRIRPTIFHNIFMEPDEVFLGIGCPVTTTWPNDTYEFIYRTYSCGIANKVLCDVTLLKTQLTYISKNASLQAEMSLSCVMHNQSPHFCEAESRGDFTGDPPGWTEDMRARRDEQTVPMVQPNLSTSSEDHHVSTEPWASETSRSEAAEVPSFMDQNFSVFHFSRM", "length": 202 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94490-1", "protein_name": "Ubiquitin conjugating enzyme E2 B", "gene_name": "ubcB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAAHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK", "length": 148 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q945S5-1", "protein_name": "Vacuolar cation/proton exchanger 4", "gene_name": "CAX4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSISTESSSNLSLLENGGGGSDKPTAETSRRVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQREDVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPSSKLLF", "length": 446 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ", "length": 386 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99N64-1", "protein_name": "Germ cell-less protein-like 2", "gene_name": "Gmcl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C7P4-1", "protein_name": "Putative zinc finger CCCH domain-containing protein 9", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADAGDNQQEAERRSDETESRSIKEPKEKEDEDENPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSGARPEKRSKIVPDFQMRDPRHHDTEWRFERERMERIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQRDSIERQRREAQENLQQQRQRDSIERQRREAQENLQQQRLQDMPENHNVDDQQNLQEQRRISIEKERTEARLRLEQIRPTVSFPINEFIRAVVLLRELIENWDDKAWKK", "length": 321 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M4-1", "protein_name": "DNA-directed RNA polymerase subunit 12-like protein", "gene_name": "NRPB12L", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLQQSETDDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKRILDKKETRIGV", "length": 61 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQK8-1", "protein_name": "Small proline-rich protein 2A1", "gene_name": "Sprr2a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWP4-1", "protein_name": "Lymphocyte antigen 6K", "gene_name": "Ly6k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFLVALLVVLGLQLVQSNALTCHVCEAQNSYACSNPSQCPGEKKFCLLAVTRIFERFFYVSKQCTRRCPTPVVSPPSTNPPSEPKEFLIEKPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGFMVLTANGLSALCLL", "length": 154 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D541-1", "protein_name": "Coiled-coil domain-containing protein 7A", "gene_name": "Ccdc7a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCAKHPSTISMKLTSVPELPYKKGLLNSSPKPKEKHNAKSKYGKNESMVLRSPPTGESIVRFALPIPLSKTKDKISADEMVRRITTNLKMVVSNLEDTYGACYDNGEKAAEKSEAEGLSIGDDVSSFLLCCSQFTSQLEEAVKEECGALESLYKWFQQQVNQMEEISKDQSNLEELQSDGKTASLNIVQIAKLARKFEDFKSRLKTRKEVMQTKNEDKEIMAETLKHYGLMEKQIEEFITSHSALESQTETESQSGTPSVTTRMARMIKIFENQSTMLEKALNDQQTIESKYKQLETDFQMLIMEKTLLEAEIRRLREIERVKSAAKEEQTKKSGKSEKKKFKEKEKNLSPNREFKSIEELLQIQKEAELLKTEKKTLQGQLKWALEEAERNKTQLEFVLHQKMEMFKEESKTKVGQSQNKSKVKIEDSKDSLPKKSDTQLGGQRKDQISSDQSKRPKKKQLADIDPSAVEDFPPETFKSFTVMPLIEEHRESISSQPKEEMAKASEQSEAEDIEGPLEIPSESSNEDDDLLPEDESPMMEQVTDVGRYKSIYISAEPIDTMSLISRTQSEMETLEAINYDNVLNEGEEQDKKIGKDSDTGRKSKRKRSSKIRKLSTHEEESDIVHYEEATKAKVPSKKRASDPYGDEAYESRGSVSKAQTYTKKQGTHQRGRGSASDAYGDEAYESRGSISKAQTYTRKQGTHQRGRGSVQEEESDTVHYEEVTRAKVPSKKQASDPYGDEAYESQGSVSKAHTHTKKQGTHQRGRGSVHEEESDTMNYEVPRKSKISSRRKGFALPITHQVEMHSSESQGSISKSNTETKKQGTHKRGRDSDADGARTPVSQGSDSKADTERKKHRSKEESTISKDSIPVLDEVQDKTFEHQESGLRLEVQAKKLTFSSQNIHNEESATDIKVEYQNVPSSSQVQLKKQKPLGGEIFTTHFVVPAESHAQLYQTHTPETQIERGTTSGTARLTTIPVEHPKKEASPDNLFPEKKLYITRAPTQTKKQYPPWDAKAETQKKTVKEVQGISEPQTKLNPTMSGIILHLDMDRVVETDLENLEETIVPHVLRSELEIGTDAKNMPETPTSREAVRTEAKGNQDVTISIAKGMKLIGKLKDQHGLSSFASKDTISPGKSLIKSSRDNQDDSLLETKPQENTSDKYHPSKTFPTKVINMLPFSEKSLGSTSANVDVAPKPVYRASRGRSRISKALQQLLKTSEHLKPTSTKNQNADLEKHLYISVRSANKHTQKDKKHGQSNNQKLKKQGALSSTKKQKHKEQPKTETIVENNDKFDDNLMMTTSSPNIKIIKELSKTLNLDGGDIELSDFVFKTASAAKKLENKGPSKTKNLNKESSRDIHILHLTTSAIRTLLLDEEAKIRSLEKKLMKQSTILQKSVSSMKKFMFEEPSRETKMKRKKREKRKIVVKSPHILPITTTQKHTIKEKSEISNLEKPIVRGTDILKKSTSARKKRVLKGKSKSATLPKKCDNFPFDLVRSSSDSSKQEVEEQPKPGNVDKKVSDDSYSPDISTTPTKKHTLKGQSKSRTIYEKGVDLPNNLVLSKSASSIQEFEEQPQPGNVDKKVSDDSYSPDISTSPTKKHTLKGQPKSENSDEKGIKRPNNLHMSASVARKRLLKALSTIP", "length": 1642 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5R2-1", "protein_name": "WD repeat-containing protein 20", "gene_name": "Wdr20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEGRGKETNEIKTHFTTREGLYRLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQTGNGNRLCFSVGRELYVYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSSGNMYSYNVEHTYGTTAPHYQLLKQGESFAVHNCKSKSTRDLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGRGHKSWVSVVAFDPYTTSVEESDPMEFSDSDKNFQDLLHFGRDRANSTQSRLSKQNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARAHANVMNATGLPAGSNGSAVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAITSGVSKFALLSLHDRKERHHEKDRKRNHSMGHISSKSSDKLNLVNKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPGKVSKFQP", "length": 567 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAF8-1", "protein_name": "Uncharacterized protein C4orf51 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVGQPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLAYRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK", "length": 208 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPV9-1", "protein_name": "Beta-defensin 5", "gene_name": "Defb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKIHYLLFAFLLVLLSPLAGVFSKTINNPVSCCMIGGICRYLCKGNILQNGSCGVTSLNCCKRK", "length": 64 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPX4-1", "protein_name": "P2Y purinoceptor 12", "gene_name": "P2ry12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVPGANATSANTTSIPGTSTLCSRDYKITQVLFPLLYTVLFFAGLITNSLAMRIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKLGAGHLRTLVCQVTSVTFYFTMYISISFLGLITIDRYLKTTRPFKTSSPSNLLGAKILSVAIWAFMFLLSLPNMILTNRRPKDKDITKCSFLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYSLITKELYRSYVRTRGSAKAPKKRVNIKVFIIIAVFFICFVPFHFARIPYTLSQTRAVFDCNAENTLFYVKESTLWLTSLNACLDPFIYFFLCKSFRNSLMSMLRCSTSGANKKKGQEGGDPSEETPM", "length": 343 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ER80-1", "protein_name": "Receptor-transporting protein 4", "gene_name": "Rtp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFPDDFSTWEQTFQELMQEEKPGAKWSLHLDKNIVPDGAALGWRQHQQTVLGRFQCSRCCRSWTSAQVMILCHMYPDTLKSQGQARMRIFGQKCQKCFGCQFETPKFSTEIIKRILNNLVNYILQRYYGHRKIALTSNASLGEKVTLDGPHDTRNCEACSLNSHGRCALAHKVKPPRSPSPLPKSSSPSKSCPPPPQTRNTDFGNKTFQDFGNRTFQGCREPPQREIEPPLFLFLSIAAFALFSLFTR", "length": 249 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FFP9-1", "protein_name": "Serine/threonine-protein kinase SRK2H", "gene_name": "SRK2H", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDKYEVVKDLGAGNFGVARLLRHKETKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEAEARYFFQQLICGVDYCHSLQICHRDLKLENTLLDGSPAPLLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKHADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIQRIMAVQYKIPDYVHISQECRHLLSRIFVTNSAKRITLKEIKKHPWYLKNLPKELTEPAQAAYYKRETPSFSLQSVEDIMKIVGEARNPAPSSNAVKGFDDDEEDVEDEVEEEEEEEEEEEEEEEEEEDEYEKHVKEAHSCQEPPKA", "length": 360 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLZ3-1", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN12", "gene_name": "KIN12", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGSSEKTTNKLVSILPNYRIGKTLGHGSFAKVKLALHVATGHKVAIKILNRSKIKNMGIEIKVQREIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDYIVEKGKLQEDEARHLFQQIISGVEYCHRNMIVHRDLKPENVLLDSQCNIKIVDFGLSNVMHDGHFLKTSCGSPNYAAPEVISGKPYGPDVDIWSCGVILYALLCGTLPFDDENIPNVFEKIKRGMYTLPNHLSHFARDLIPRMLMVDPTMRISITEIRQHPWFNNHLPLYLSIPPLDTIDQAKKIEEEIIQNVVNIGFDRNHVVDSLANRIQNEATVAYHLILDNRNQNSVPNDPFQSKFKEISDGIFNSTLPVQNITSHVGHSFSALYGLKSNVKDDKTWTLGLQSQGSPYDIMTEIFKALQNLKICWKKIGLYNIKCRWVRSFAYYKNHTIEDECAIILPTVIKFEIQLYKVREGKYLLDILRIDGPQFIFFDLCVAFLRELGVL", "length": 494 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVV4-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 55", "gene_name": "RH55", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDREVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDSNKASRKRKLTGRQRQTIQTAQDEEEMNLRL", "length": 465 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JI02-1", "protein_name": "Secretoglobin family 2B member 20", "gene_name": "Scgb2b20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACLPFFEGYASVLSGSRVWLYQELQAFNATAEEKVALEKIQDCFSEERIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJQ7-1", "protein_name": "X-linked lymphocyte-regulated 4B", "gene_name": "Xlr4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLV9-1", "protein_name": "Prolactin-2C5", "gene_name": "Prl2c5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPSLIQPCSWILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFTEFEKHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNVPDIIISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDIYLNILKCYMLKIDNC", "length": 222 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LJY9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 18", "gene_name": "CYP705A18", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATLISVDFQHCFMYIILLCLFSLLCYSLFFRKPKGTRVGCDLPPSPPSLPIIGHLHHLLSSLTHKSLQKLSSKYGPFLHLRIFSVPIILVSSASVAYEIFKAHDVNVSSRGAAAIDESLLFGSSSFIYAPYGDYWKFMKKIFATKLLRPQVLENSRGVRAEELKRFYRRILDKARKNENIEISKESAMLMNNILCRMSMGRSFSEENGEAERVRGLVGESYALVKKIFFAATLRRLLEKLRIPLFRKEIMGVSDRFDELLERIIVEHKDKLEKEHQVMDMMDVLLAAYRDKNAEYKITRNHIKSFFVDLFVGGTDTSVQTTQWTMAEIINNPNILQTLRKEIDSVVGKSRLIHETDIPNLPYLQAVVKEGLRLHPPGPLLIRTFQERCEMKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLSYSRSGQEDEKEQTLKYLSFGGGRRGCPGVNLGYIFVGTAIGMMVQCFDWKIEGDKVNMEETYGGMNLTMVNPLKCTPVPRTQPFSFTSNLEILSS", "length": 524 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY1-1", "protein_name": "SKP1-like protein 8", "gene_name": "ASK8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSTKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE", "length": 152 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTG5-1", "protein_name": "Callose synthase 4", "gene_name": "CALS4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNQPNRGQILQTVFSHFFPVASPDSELVPSSLHEDITPILRVAKDVEDTNPRSLFLQDLDIKSVDDSINILSGHSHALDKANELDPTSSGRDVRQFKNTILQWLEKNNESTLKARQKSSDAHEMQSFYQQYGDEGINDLLNAGAGSSSSQRTKIYQTAVVLYDVLDAVHRKANIKVAAKILESHAEVEAKNKIYVPYNILPLDPDSKNHAMMRDPKIVAVLKAIRYTSDLTWQIGHKINDDEDVLDWLKTMFRFQKDNVSNQREHLILLLANVQMRQTQRQPNLLDDRALDTVMEKLLGNYNKWCNHVGLESSLRFPKDKQQKVVQQRKLLYTGLYLLIWGEAANLRFMPECLCYIYHHMAFELFEMLESKGSKKKYKPKNPTYSGKDEDFLTKVVTPVYKTIAEEAKKSGEGKHSEWRNYDDLNEYFWSKQYLDKLGWPMKANADFFCKTSQQLGLNKSEKKPDLGDGCVGKVNFVEIRTFWHLFRSFDRMWSFYILSLQAMIIIAWNETSESGGAVFHKVLSVFITAAKLNLFQAFLDIALSWKARHSMSTHVRQRYIFKAVAAAVWVLLMPLTYAYSHTSIFIVAILIYLSPNMLPEMLLLIPSIRRTLEKSDFRPVKLIMWWSQPELYIGRGMHESAWSIYKYMMFWIVLLTSKLAFSYYVEQIKPLMGPTKEIMSVPMPGYWLPEFFPHVKNNRGVVITLWSPVILVYFMDTQIWYAIVSTLVGGLYGAFRHIGEIQTLGMLRSRFQSLPGAFNACLIPNENTKEKGIKLAFSRKCHKIPNTNGKEAKQFSQMWNTIINSFREEDLISNRELELLLMSCWAYPDLDFIRWPIFLLASKIPIAVDIAKKRNGKHRELKNILAEDNCMSCAVRECYASIKKLLNTLVTGNSDLMLITTVFTIIDTHIEKDTLLTELNLSVLPDLHGHFVKLTEYVLQNKDKDKIQIVNVLLKILEMVTKDILKEEIKRLHLLLTVKESAMDVPSNLEARRRLTFFSNSLFMEMPGAPKIQNMLSFSALTPYYSEDVLFSTFDLEKENDGVSILFYLQKIFPDEWKNFLERVKCGTEEELDAIDYLKEEIRLWASYRGQTLTKTVRGMMYYQKALELQAFFDLANERELMKGYKSAEASSSGSSLWAECQALADIKFTYVVACQQYSIHKRSGDQRAKDILTLMTTYPSLRVAYIDEVEQTHIYSKGTSENFYYSALVKAAPQTYSTDSSDSGHMLDQVIYQIKLPGPPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRNLLQEFLEKNGGVRYPTILGLREHIFTRSVSCLAWFMSNQEHSFVTIGQRVLANPLKVRFHYGHPDVFDRVFHLTRGGVSKASKVINLSEDIFAGFNSTLREGTVSHHEYIQVGKGRDVGLNQISMFEAKIANGSGEQTLSRDLYRLGHQFDFFRMLSCYFTTVGFYFCSMLTVLTVYVFLYGRLYLVLSGVEKELGNKPMMMEIILASQSFVQIVFLMAMPMIMEIGLERGFYDALFDFVLMQLQLASVFFTFQLGTKFHYYCKTLLHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKATELGILLLVYHIFGPTYIGLFTISIWFMVGTWLFAPFLFNPSGFEWHEIVEDWADWKKWIEYDNGGIGVPPEKSWESWWEKDIEHLQHSGKWGIVVEIFFALRFFIFQYGLVYQLSAFKNKYSSLWVFGASWLLILILLLTVTVLDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKHRSSKNKD", "length": 1871 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU95-1", "protein_name": "Pyruvate kinase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEMLLGGQATNGALRSKTKIVCTLGPASRSVEMIEKLLKAGMNVARFNFSHGSHSYHQETLDNLRTAMDNTGILCAVMLDTKSPVIRTGFLKEGKPIQLKQGQEITISIDYKIQGDSNTISMSYKKLAEDLKPGDVILCSDGTISLNVLSCDKYLGLVRCRCENSALLGERKNVNLPGIVVDLPTLTEKDKEDIMQWGVPNKIDIIALSFVRKGSDLIQVRKLLGEHSKSIMLMSKVENQEGVMNFDKILENSDAFMVARGDLGMEIPIEKMFLAQKTMINKANAHGKPVVTATQMLESMTVSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDILHKKTLGMVSLPLSPIESLAASAVSTARSVFASAIVVLTRGGYTAELVAKYRPSVPILSVIMPEIAECSDSVAHVARRGLIYRGIIPVVGCSARDSTEEMIRLAIGFAKTKGICKTGDSIVALHKIDGSSIVRIVSVE", "length": 497 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX08-1", "protein_name": "Annexin D6", "gene_name": "ANN6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASLKIPANIPLPEEDSEQLHKAFKGWGTNEGMIISILAHRNATQRSFIRAVYAANYNKDLLKELDGELSGDFERVVMLWTLDPTERDAYLANESTKLFTKNIWVLVEIACTRPSLEFFKTKQAYHVRYKTSLEEDVAYHTSGNIRKLLVPLVSTFRYDGNADEVNVKLARSEAKTLHKKITEKAYTDEDLIRILTTRSKAQINATLNHFKDKFGSSINKFLKEDSNDDYVQLLKTAIKCLTYPEKYFEKVLRRAINRMGTDEWALTRVVTTRAEVDLERIKEEYLRRNSVPLDRAIANDTSGDYKDMLLALLGHDHA", "length": 318 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXS7-1", "protein_name": "Citrate synthase 1, peroxisomal", "gene_name": "CSY1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEISERARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGNEYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVEELAEKSTYTEVTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSKQVRDKQIVRVLGQAPTIAAAAYLRKAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSGGDVYTAVSGGVGAIYGPLHGGAVEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPRGKVVKKLADEVFSILGRDPLVEVGDALEKAALSDEYFVKRKLYPNVDFYSGLINRAMGIPSSFTAVSRIAGYLSHWRESLDDPDTKIMRPQQVYTGAGIRHYETVRERTKL", "length": 480 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY06-1", "protein_name": "Glycine/proline-rich protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MITCILKISISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRFYCRFDTGFDVRFAAGFAADLTIGFTIGFDSGFATFLDVGLDDGFATGLDISFAGGFVTGFATDFDVGFDTGFTIGFDTGFDVGLPAVFSIGFDTGFAVGFAISFTVGFDAGFPTGFFVSLDVGFVADFVIGFATGIGVGFEVDFATDFDTCFATGFAVSFDVGFAGGFSIGFAADFANGFTVGFDGGFDASFFVGLDVGFVVGFVTSFAAGLDVGFAIDFATGFDTGFAFGLAFGFDVGFAAGFAVGFATGFTVVFDVGFASDFFVGLDVGFLTGFATDFDIGFVVDFDIGFATGFVVGFDDGSIVGLVVGLPASLDDGLAIDFVVGLDIGFVTGLFVGLVDGLTTDLDVGLVDGLDDGLDDGLDVDLVVVGFVVDGLAVDLDVGLGVGLTVGFVDGLDVGFDDGLDADTVDGLDVGLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDGLDVDLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDDGLVVGLFDVFVGTGLSWEIPPPGKLPPDASPLGIGSFGVGPPGASPFIASPSGEGPLSEGLLGIRSFGISPLSIRPLGISPLGISPPNIEPSKADASDADPSNAGPLGISPLSIDPPVAGASDEGPLGKLPPDLSPPGKGSSGEGPLVESPPSEGPLGVDPLGAGSLGISPLGKSPLRIRPLGISPFGKIPSNIDPSSALASDGGPPDEPASAEGSPDVGIFGISPPIIDPPVEGASDGDPPEKLSLDISPLGKGPSGVSLLGAGPPGVGPVIASPPGEGPRDAGPLGAGSLGISPLNIRRLGISPSGISPPNIDLPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGESESDGDPAGKLPLDISPLSKGPSCVSPLGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLSISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGEDASDGDPPGKFPLDISPLGKCPSGVSPLGVGPPGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLGISPFGISPPNIDLPVAGTSIGGPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGKLPLDISPVGKGPSGVSPPGAGPPGDGPVIASPPGESPLDAGPLGAGSLGISPFGISPPNIDWPVAGTSFGGPPGEGASNGGPLVVGPFDMPVVGASDGDALEKLPLDISLPGKGPSDVGPPGAGLPGAAPPGVDLSNVGASDRGASGEGASDGCPPDVGPFDICLLSIDPPVVGASDGGPPDEGASNGGPPDTDSFGGDPLCASPLGIDPPIVDASDGDPFGAGSPDEDPSNENASGEGASGESPPCSDVSCKGPSSAGASIGCSLDNGASTPSSPDTFLSNVFPSDKSSPDAFSPDVAALVTLPSGKDPFDISPPIVALLDVSPLGKTSSDAYSSGISPGIFEKSFPLVKLQTIEYM", "length": 1504 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S0-1", "protein_name": "Probable mannose-1-phosphate guanylyltransferase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQLLVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDIVM", "length": 364 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NR96-1", "protein_name": "Toll-like receptor 9", "gene_name": "TLR9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFCRSALHPLSLLVQAIMLAMTLALGTLPAFLPCELQPHGLVNCNWLFLKSVPHFSMAAPRGNVTSLSLSSNRIHHLHDSDFAHLPSLRHLNLKWNCPPVGLSPMHFPCHMTIEPSTFLAVPTLEELNLSYNNIMTVPALPKSLISLSLSHTNILMLDSASLAGLHALRFLFMDGNCYYKNPCRQALEVAPGALLGLGNLTHLSLKYNNLTVVPRNLPSSLEYLLLSYNRIVKLAPEDLANLTALRVLDVGGNCRRCDHAPNPCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSWLNASWFRGLGNLRVLDLSENFLYKCITKTKAFQGLTQLRKLNLSFNYQKRVSFAHLSLAPSFGSLVALKELDMHGIFFRSLDETTLRPLARLPMLQTLRLQMNFINQAQLGIFRAFPGLRYVDLSDNRISGASELTATMGEADGGEKVWLQPGDLAPAPVDTPSSEDFRPNCSTLNFTLDLSRNNLVTVQPEMFAQLSHLQCLRLSHNCISQAVNGSQFLPLTGLQVLDLSHNKLDLYHEHSFTELPRLEALDLSYNSQPFGMQGVGHNFSFVAHLRTLRHLSLAHNNIHSQVSQQLCSTSLRALDFSGNALGHMWAEGDLYLHFFQGLSGLIWLDLSQNRLHTLLPQTLRNLPKSLQVLRLRDNYLAFFKWWSLHFLPKLEVLDLAGNQLKALTNGSLPAGTRLRRLDVSCNSISFVAPGFFSKAKELRELNLSANALKTVDHSWFGPLASALQILDVSANPLHCACGAAFMDFLLEVQAAVPGLPSRVKCGSPGQLQGLSIFAQDLRLCLDEALSWDCFALSLLAVALGLGVPMLHHLCGWDLWYCFHLCLAWLPWRGRQSGRDEDALPYDAFVVFDKTQSAVADWVYNELRGQLEECRGRWALRLCLEERDWLPGKTLFENLWASVYGSRKTLFVLAHTDRVSGLLRASFLLAQQRLLEDRKDVVVLVILSPDGRRSRYVRLRQRLCRQSVLLWPHQPSGQRSFWAQLGMALTRDNHHFYNRNFCQGPTAE", "length": 1032 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QUG3-1", "protein_name": "Prion-like protein doppel", "gene_name": "Prnd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNRLGTWWVAILCMLLASHLSTVKARGIKHRFKWNRKVLPSSGGQITEARVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKLHQRVLWRLIKEICSAKHCDFWLERGAALRVAVDQPAMVCLLGFVWFIVK", "length": 179 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SAC9-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAGAASALFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQFTEARILSEFIKTDAYRMEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM", "length": 428 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCN2-1", "protein_name": "Cytochrome P450 71B31", "gene_name": "CYP71B31", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMFLGLLFLFPLFFILFKNLLPPRKKLPPGPTGLPLIGNLHQLGRLLHSSLHKLSLEHGPVMLVRWGVVPMAVFSSNEAAKEVLKTHDLETCNRPKLVANGLFTHGYKDIGFTQYGEEWREMKKFVGLELFSPKKHKSFRYIREEEGDLLVKKISNYAQTQTLVDLRKSLFSYTASIIFREAFGQNFRECDYINMDKLEELVQETETNVCSLAFTDFFPRGLGWLVDRISGQHSRMNIAFSKLTTFFEDVIDELLKTKQLDDHSDLVTAMLDVINRPRKFGSLKITYDHLIAMMSDVVLAGVNAGTVTMIWTMTELTRHPRVMKKLQEEIRATLGPNKERITEEDLEKVEYLNLVIKESFRLHPPAPLLLPRETMSDIEIQGYHIPKNAHVKINTYAIGRDPKRWTNPEEFNPERFLNTSINYKGQHYELLPFGAGRRNCPGMTLGITILELGLLNILYYFDWSLPSGMTIKDIDMEEDGALNIAKKVPLQLVPTLP", "length": 498 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ39-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 6", "gene_name": "CYP705A6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAILSVDFQNCFIFIVLCLFSLFCYSLFFKKPKHPRGCDLPPSPPSLPIIGHLHLLFSPLTHKSLQKLSSKYGHLLHLRIFNVPVILVSSASVAYEIFRAHDVNVSSRGVAAIDESLLFGSSGIITAPYGDYWKFMKKLIATKLLRPQSLESSRGIRGEELTRFYNSLLDKARMTESVEISTEAMKLVNNTLCRMSMGRSFSEENGEAEKIRGLVGESYALTKKMFLASLLRKPLKKLRISLFEKEIMGVSDRLDELLERILVEHEEKLHEEHQGTDMMDVLLAASGDENAEYNITRNHIKSFFVEIFIGATDTSVQTTQWTMAEILNHPNVLERLRKDIDSVVGKTRLIHETDLPNLPYLQAVVKEGLRLHPPGPLLVRTFQERCKIKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLRAPPMGGSLDKFIEFS", "length": 442 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMT4-1", "protein_name": "Large ribosomal subunit protein eL13y", "gene_name": "RPL13C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK", "length": 206 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIIRDIMEDPENEGPHNMRSDFEPLLSVLRLRDYETGDIIEFDSTEASEEALSDITEFGSTEASEAHFEEPYSARIKKVEKEINELAEKICNLGIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVKGYQKFSATPKYMAYYI", "length": 464 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM4-1", "protein_name": "Serine hydroxymethyltransferase 5", "gene_name": "SHM5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISESRND", "length": 470 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWH4-1", "protein_name": "Syntaxin-42", "gene_name": "SYP42", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSAEREREIQQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQREGAMVKCATILLVLCLIMIVLLILKNILF", "length": 323 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYN6-1", "protein_name": "SOUL heme-binding family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEAALSIFKLSFLLTLLSGGSDLIDSLPPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIWFPFEMEDEETVSIVTQ", "length": 225 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZB4-1", "protein_name": "Putative DEAD-box ATP-dependent RNA helicase 43", "gene_name": "RH43", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVDDGYVEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV", "length": 542 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0E0-1", "protein_name": "Putative ATPase, plasma membrane-like", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATGDSLEDIKIEIDDDLEKIPIEEVFKKLRCSREGLSGAEGKERLKIFGPNKLENKKKEHITLRFFALMFKPLSWVIQAAAIMAMLFANGDGRQLFLGIVCLLIVNTIICYLKEDDAANVVAMARAGLSPKTKVLRDGKWSEQEASILVPGDIVSIKPGDIIPCDARLLEGDTLKVDQSALTGEFGPITKGPGEEVFSGTTCKQGEMEAVVIATGVHTFSGTTAHLVDNRTNKVGHFRKVVTEIENLCVISIAIGISIEVIVMYWIQRRNFSDVINNLLVLVIGGIPLAMPTVLYVIMVTGSLRLYRTGTITQRITAIEDMAAIDVLCSDKTGTLTLNKLSVDKNLIKVYSKDVEKEQVLLLAARASRIENRDGIDAAMVGSLADPKEARAGIREVHFNLVDKRTALTYIDGNGDWHRVSKGTPEQILDLCNARDDLRKSVHSAIRNYAERGLKSFAISWFRNTNCNTVFFFPYQLCSEHKYHIVNKLQERHICGLIGDGVDDVPSLKKADVGIAVANATEAARAASDIVLTEPGLSVIIDAVLASRAILQQMKHYTIYAVSITIRVVFGFMFIALIWKFDFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSLFDNMVHLVLNSYAKLSNGIYNHTQADHTYSLLEVSTPPSQDLRGVGWV", "length": 813 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0H7-1", "protein_name": "Histone H2A.8", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVCNTNILKDVSTKISAFENVRMIMVEGEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH", "length": 118 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VXF6-1", "protein_name": "Calnexin 14D", "gene_name": "Cnx14D", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAWKMLFAILLLLSAAKTGYLAPESENSVEDVQIEPGAIYGDEKFAYKSPVIDAEKFYFADHFDDVEASRKRWVLSQAKKNDIADEIAKYDGIWNWESPQRIFWANDLGLVLKSKAKHAAIAAPFRQPFDFKSNKPLVVQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNLKMHFIFRHVNPLNGNITEKHCKKPNARLGVPFTDKLPHLYQLVVRPDNSFEIRLDHKIIKEGSLLTDFVPPVNPPAEIDDPNDHKPESWDERKKIPDPNAHKPEDWDEDAPPHLPDTDAVMPNGWLEDEPDMIFDPTAIEPEDWNSEIDGEWEAPLVENPVCKKAPGCGKWKAPLIPNPNYKGKWSAPMIENPNNQGKWAPRKIANPDFFEDLKPFQMTPINAVGLELWSMSSDILFDNLIITDDVELARDFAANSFDIKRLYIDRESFGNKVVELARANRAIWGIVIVAIAVPVAITIFCKFGLGPSRVAAAKKAAAAAAKKTDDPQPDDDLGAEEEEKLEKGKKEEEKKEEEEEEEKEENKEEKKEEEKDDEKEMKDCEEEEDDEEKDDEEKTDERAAGDTNKESTPLSASPKKNQKSYLDNNEDEEDTLKNKEPTPKKRKRKALKE", "length": 639 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W240-1", "protein_name": "K Homology domain-containing protein", "gene_name": "cg3927", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALLIDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMNPKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYMEEVEYDYDEHLMFCSPVVRL", "length": 270 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W4G6-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG2861", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDYEIIEFVRRHISHIDISAETRMRYPDPISNNNFDWNSIGLGEQEDAIGQDQQSQALNENANNVSPDVPPSTIAEPTLEPSTIEGNQGQNPRIISSMPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNTESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESDTNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCDVETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKIRKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQNFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIGKIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGGTNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQSSESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPNGEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIPNSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQTAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPKAPRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAPRVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLETPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSNMPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMKSDGRIKQGRVSKPSLRFSPSSSSLRPVVRSLSSSSSSSSSWSSCTTCSTCSSCSTCSSSSDSSQSSRSRNRKRRSPKVPIPHKLFESNGEINFQLGQPTRLESPSPPPPVPMQACGTFEEHLTDLTLVRVHAISPLRSPTYDFDFDLPEPMLSEESSSSSSESNDESNVNCQMAPNSQNVSMHFLKVMVFYNCYVLFQQLEKKHQSLFEESSSSSSSESNDETNVNCQMTPNSQNQKKLQSAPIREPSPDQPPEAASRSSNGGTIGPCNLKAFRRDFMISNAENTGFTNPSELNLKKCATKVCTPMERNSGSQLPIQNRFILPNSNKEEGKMNVEPVMPKHKPSRIPIRTKTPIALNLMKEPEDNARKPKNILKPFFSNADVNPCSSTDYEPNFKPCESPLPAKQNDFKLINKDKKSWVSHYQEQESQELKENSFFYAKFNLPNIPKKSFKDSKANAERRCTKTFEDVRKEAQQSRYTKAINKRQNKKAMLESALGNAITEDPTVNCNLADNPNDQVEMPRNPDIVEPTVKPVKFKAFVSASIKPKSSKKRKLMNSASNSKLFKFKIFESEVNKDENEEEDVIPDNLIIPVKRKQNISELLDMQPSTSKAAATITSQPKIAQLKRMPSKLLNEKMKSYAKKRSNDDENKDTKNTGMHMHRYKIPKLSANKPQNTSTTQSPTRGFSRLPGMYQEPNFQNAQHPFSTRGYYPYQRAYPLHRPTSQYHMNQPQPLRLHHSMYVDAEPSFESVFPAPRYQPYNINPSMRHHYSYPGEPSPSTYPMGGIPFQNNNTLYPPMRNDLCYPRGRLNYPVRNLPPMNSQGTYPPNYPQNFLPNYPPSRQFLLSMQRLADINKQIASGSIESVGGFIQMAYAGRKYRTLKDLRERTMLSKDSLRKIFKCMCKIKRPKWRISKFYLYAYWCEISGIPQSSEFGKPLELNAAYRKVISSYAENKFLRMESLMEKTGFGKSKLKRVLKMIGRKRSTKWRLLNYRKPLIHLHRSQDM", "length": 1893 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNGTEGSNFYIPMSNRTGLVRSPYDYTQYYLAEPWKFKALAFYMFLLIIFGFPINVLTLVVTAQHKKLRQPLNYILVNLAFAGTIMVIFGFTVSFYCSLVGYMALGPLGCVMEGFFATLGGQVALWSLVVLAIERYIVVCKPMGSFKFSANHAMAGIAFTWFMACSCAVPPLFGWSRYLPEGMQTSCGPDYYTLNPEYNNESYVMYMFSCHFCIPVTTIFFTYGSLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFLFAWVPYASFAAWIFFNRGAAFSAQAMAVPAFFSKTSAVFNPIIYVLLNKQFRSCMLNTLFCGKSPLGDDESSSVSTSKTEVSSVSPA", "length": 349 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9XK79-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4L", "gene_name": "nad4L", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLIDLILIAIYVIGISGLIFNKNNIINILIISELNLGTLGMLFVLASVELNDILGELSGLYILTFTAAESAIGLAIVVILYSKTGIINIRHLNKLKG", "length": 98 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Y2B0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "CNPY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1X0-1", "protein_name": "C-C motif chemokine 27", "gene_name": "Ccl27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEGLSPASSLPLLLLLLSPAPEAALPLPSSTSCCTQLYRQPLPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGTVPSLNLVLQKKMYSHPQQQN", "length": 120 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "S4R2L0-1", "protein_name": "Secretoglobin, family 2B, member 12", "gene_name": "Scgb2b12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGILLLLGLLITGELSFQTTEACVPFFEVYASVLSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLDNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "W4VSP8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNLQSKHQQRFFNKDIFFSL", "length": 311 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WF74-1", "protein_name": "Uncharacterized protein LOC100334758 precursor", "gene_name": "si:dkey-52p2.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARTSENMIGKVLFVLFLLSGPTSVLTDFHSLQILGTYIKGDTLFPQISFTFMLDDLTVGLYITERDEFIPRDNTTNEDETVSDMLDKIKNELQPLLKGTLIFQNSTESPQLFQIAWHCELLDNNKTGQMILKIAFSGSTTDEVSFYGNNFTCQCQNNMATVPLEYFQMQFKSIYYPVCMTTLGGYLVKRQVQVNRKVQPKVRLIKKVHPKSGGFRLSCLASEFYPYFINLTLLRDGQPVSDHEVTGGDLLPNGDGTYQMRKSLEIRADEREKHKYTCSAKHLDKNLDVDFEFDPSYPVKIVIPVVVLLSLVLVLTAVLIHKCMNKQAASPPEQQEPIEMGGRLRK", "length": 346 }, "evidence": [ { "id": "F1S7I2", "url": "https://omabrowser.org/oma/group/F1S7I2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1S7I2", "url": "https://www.uniprot.org/uniprotkb/F1S7I2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "F1S7I2", "url": "https://www.uniprot.org/uniprotkb/F1S7I2" } ], "pmid": "" }, { "name": "defense response to bacterium", "id": "GO:0042742", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042742", "evidence": [ { "database": "UniProtKB", "id": "F1S7I2", "url": "https://www.uniprot.org/uniprotkb/F1S7I2" } ], "pmid": "" }, { "name": "killing of cells of another organism", "id": "GO:0031640", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031640", "evidence": [ { "database": "UniProtKB", "id": "F1S7I2", "url": "https://www.uniprot.org/uniprotkb/F1S7I2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "membrane destabilizing activity", "id": "GO:0140912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140912", "evidence": [ { "database": "UniProtKB", "id": "F1S7I2", "url": "https://www.uniprot.org/uniprotkb/F1S7I2" } ], "pmid": "" } ] } ] }, 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genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S7L5", "url": "https://www.uniprot.org/uniprotkb/F1S7L5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LD43-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100759940", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFMEGANHSVVSEFVFLGLTNSWDIQLLVFVFSSVFYMASMMGNSLIIFTVASDPQLHSPMYFLLANLSFIDLGVSCVTSPKMIYDLFRKHKVISFRGCVIQIFSIHVIGGVEMVLLIAMAFDRYVAICKPLHYLTIMGPKMCLFFVVTAWVVGLTHSLVQLAFVVNLPFCGPNVLDSFYCDLPRFIKLACIDTHKLEFMVTANSGFISVGSFFILIISYIVIIITVQKHSSSGSSKALSTLSAHISVVVLFFGPLIFVYTWPFPSTHLDKFLAIFDAVITPFLNPVIYTFRNQEMKMAMKRIFRQLLSYRKIS", "length": 314 }, "evidence": [ { "id": "F1S7L5", "url": "https://omabrowser.org/oma/group/F1S7L5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1S7L5", "url": "https://www.uniprot.org/uniprotkb/F1S7L5" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1S7L5", "url": "https://www.uniprot.org/uniprotkb/F1S7L5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S7L5", "url": "https://www.uniprot.org/uniprotkb/F1S7L5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" }, { "start_pos": 69, "end_pos": 71, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S7L5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 316, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S7L5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S7L5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S7L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7L5" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 291, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 }, { "start_pos": 69, "end_pos": 71 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", 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"title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S7M1-1", "uniprot_ac": "F1S7M1", "uniprot_id": "F1S7M1_PIG", "mass": { "chemical_mass": 55675.0, "monoisotopic_mass": 55675.0 }, "refseq": { "ac": "XP_003480876", "name": "fibronectin type III and SPRY domain-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480876" }, "gene_names": [ { "name": "FSD1", "type": "recommended", "evidence": [ { "id": "F1S7M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7M1" } ] }, { "name": "FSD1", "type": "synonym", "evidence": [ { "id": "XP_003480876", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480876" } ] } ], "protein_names": [ { "name": "Fibronectin type III and SPRY domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "F1S7M1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7M1/entry#names_and_taxonomy" } ] }, { "name": 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"IPR003649", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003649", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050617", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050617", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523485", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523485", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PARCAQS", "url": "https://omabrowser.org/oma/group/PARCAQS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S7M1", "url": "https://www.orthodb.org/?gene=F1S7M1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24099", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24099", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24099:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24099:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003480876", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480876", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S7M1", "url": "https://www.uniprot.org/uniprotkb/F1S7M1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7M1-1", "url": "https://www.uniprot.org/uniprotkb/F1S7M1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDQREALRKIITTLAVKNEEIQSFIYSLKQMLLNVEANSAKVQEDLEAEFQSLFSLLEELKEGMLMKIKQDRASRTYELQNQLAACTRALESSEELLETANQTLQATDSGDFPQAAKQIKDGVTMAPAFRLSLKAKVSDNMSHLMVDFAQERRMLQALTFLPVPSAPVIDLAESLVADNCVTLVWRMPDEDNKIDHYVLEYRRTNFEGPPRLKEDQPWMVIEGIRQTEYTLTGLKFDMKYMNFRVKACNKAVSGEFSEPVTLETPAFMFRLDASTSHQNLRVDDLSVEWDAMGGKVQDIKAREKDGKGRTASPVNSPARGIPSPKRMPSGRGGRDRFTAESYTVLGDTLINGGEQYWEVRYEPDSKAFGVGVAYRSLGRFEQLGKTAASWCLHVNNWLQVSFTAKHANKAKVLDAPVPDCLGVHCDFHQGLLTFYNARTKQLLHTFKAKFTQPLLPAFTVWCGSFHVTTGLQVPSSVRCLQKRGSATSSSNTSLT", "length": 496, "header": "tr|F1S7M1-1|F1S7M1_PIG Isoform 1 of Fibronectin type III and SPRY domain-containing protein 1 OS=Sus scrofa OX=9823 GN=FSD1 PE=4 SV=3 CANONICAL=F1S7M1-1" }, "isoforms": [ { "isoform_ac": "F1S7M1-1", "url": "https://www.uniprot.org/uniprotkb/F1S7M1/entry#F1S7M1-1", "sequence": { "sequence": "MEDQREALRKIITTLAVKNEEIQSFIYSLKQMLLNVEANSAKVQEDLEAEFQSLFSLLEELKEGMLMKIKQDRASRTYELQNQLAACTRALESSEELLETANQTLQATDSGDFPQAAKQIKDGVTMAPAFRLSLKAKVSDNMSHLMVDFAQERRMLQALTFLPVPSAPVIDLAESLVADNCVTLVWRMPDEDNKIDHYVLEYRRTNFEGPPRLKEDQPWMVIEGIRQTEYTLTGLKFDMKYMNFRVKACNKAVSGEFSEPVTLETPAFMFRLDASTSHQNLRVDDLSVEWDAMGGKVQDIKAREKDGKGRTASPVNSPARGIPSPKRMPSGRGGRDRFTAESYTVLGDTLINGGEQYWEVRYEPDSKAFGVGVAYRSLGRFEQLGKTAASWCLHVNNWLQVSFTAKHANKAKVLDAPVPDCLGVHCDFHQGLLTFYNARTKQLLHTFKAKFTQPLLPAFTVWCGSFHVTTGLQVPSSVRCLQKRGSATSSSNTSLT", "length": 496, "header": "tr|F1S7M1-1|F1S7M1_PIG Isoform 1 of Fibronectin type III and SPRY domain-containing protein 1 OS=Sus scrofa OX=9823 GN=FSD1 PE=4 SV=3 CANONICAL=F1S7M1-1" }, "locus": { "chromosome": "2", "start_pos": 74485641, "end_pos": 74471939, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014752.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014752.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014354.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014354.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S7M1", "url": "https://www.uniprot.org/uniprotkb/F1S7M1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523485", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523485", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B1H2A2-1", "protein_name": "Fibronectin type III and SPRY domain-containing protein 1", "gene_name": "Fsd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDQREALRKIVTTLAMKNEETQTFIYSLKQMLLNVEANSAKVQEDLEAEFQSLTSVLEELRESMLMKIKQERASRTYELQNQLTACTRALESSEELLETANQTLQAADREDFPQAAKQIKDGVTMAPAFRLSLKAKVSDNMSHLMVDFTQERQMLQALKFLPVPSAPIINLAESLVADNCVTLVWHMPEEDSKIDHYVLEYRRTNFEGPPRLKEDHPWMVVEGIRHTECTLTGLKFDMKYMNVRVKACNKAVAGEFSEPVTLETPAFMFRLDGSTSHQNLRVEGLSVEWDAMGGKVQDIKAREKEGKGRTASPVNSPARGTPSPKRTASGRGGRDRFTAESYTVLGDTPIDSGEHYWEVRFEPDSKAFGLGVAYRSLGRFEQLGKTAASWCLHANNWLQASFTAKHANKVKVLDSPVPDCLGVHCDFHQGLLSFYNARTKQLLHTFKTKFTQPLLPAFTVWCGSFQVTTGLQVPSAVRCLQKRGSATSSSNTSLT", "length": 496 }, "evidence": [ { "id": "F1S7M1", "url": "https://omabrowser.org/oma/group/F1S7M1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HCF4-1", "protein_name": "Fibronectin type III and SPRY domain-containing protein 1", "gene_name": "Fsd1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEDQREALRKIITTLAVKNEETQTFIYSLKQMLLNVEANSAKVQEDLEAEFQSLMSVLEELKESMLMKIKQDRASRTYELQNQLAACTRALESSEELLETANQTLQAADSEDFPQAAKQIKDGVTMAPAFRLSLKAKVSDNMSHLMVDFAQERQMLQTLKFLPVPSAPIIDLAESLVADNCVTLVWRMPDEDSKIDHYVLEYRRTNFEGPPRLKEDHPWMVVEGIRHTEHTLTGLKFDMKYMNFRVKACNKAVAGEFSEPVTLETPAFMFRLDGSTSHQNLRVEDLSVEWDAMGGKVQDIKAREKEGKGRTASPVNSPARGTPSPKRMSSGRGGRDRFTAESYTVLGDTLIDGGEHYWEVRFEPDSKAFGLGVAYRSLGRFEQLGKTAASWCLHANNWLQASFTAKHANKVKVLDSPVPDCLGVHCDFHQGLLSFYNARTKQLLHTFKAKFTQPLLPAFTVWCGSFQVTTGLQVPSAVRCLQKRGSATSSSNTSLT", "length": 496 }, "evidence": [ { "id": "F1S7M1", "url": "https://omabrowser.org/oma/group/F1S7M1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q05B84-1", "protein_name": "Fibronectin type III and SPRY domain-containing protein 1", "gene_name": "FSD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEDQKEALRKIITTLAVKNEEIQSFIYSLKQMLLNVEANSAKVQEDLEAEFQSLFSLLEELKEGMLMKIKQDRASRTYELQNQLAACTRALESSEELLETANQTLLATDSKDFPQAAKQIKDGVTMAPAFRLSLKAKVSDNMSHLMVDFAQERRMLQALTFLPVPSAPVIDLTESLVADNCVTLVWRMPDEDNKIDHFVLEYRRTNFEGPPRLKEDQPWMVIEGIRQTEYTLTGLKFDMKYMNFRVKACNKAVSGEFSEPVTLETPAFMFRLDASTSHQNLRVDDLSVEWDAMGGKVQDIKAREKDGKGRTASPVNSPARGTPSPKRMPSGRGGRDRFTAESYTVLGDTLIDGGEHYWEVRYEPDSKAFGVGVAYRSLGRFEQLGKTAASWCLHVNNWLQVSFTAKHANKAKMLDAPVPDCLGVHCDFHQGLLSFYNGRTKQLLHTFKAKFTQPLLPAFTVWCGSFHVTTGLQVPSSVRCLQKRGSATSSSNTSLT", "length": 496 }, "evidence": [ { "id": "F1S7M1", "url": "https://omabrowser.org/oma/group/F1S7M1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q1LY10-1", "protein_name": "Fibronectin type III and SPRY domain-containing protein 1", "gene_name": "fsd1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDDQKESLRKIITTLALKNEEIQNFICSLKQSLENLEANSNRVQEDLESEFSSLHSVLDDLKEGMVTRIKQERASRTYELQSQLGACTKALESSEELLEFANQTLCSSENDSFTQAAKDIKDSVTMAPAFRLSLKAKASDSMNHMMVDFTHERNLLQSITFLPVPATPEIHVADCQVFDNTVTVVWTLPEPDSKIDHYILEHRKTNHEGPPRAREDYPWMVVEGIKETEYTLTGVRFDTRYMTFRVKACNKAVAGEFSEPVTLETHAFVFKLDASSSHQNLKVEDLSVEWDSSGGKVAVQDIRKEKNRTNSPMHSPARTAMMSPKRAPSARVGRDRFTAESYTVLGDTMIDAGQHYWEVRFDKESKAFAAGVALRSLGRFDQLGKSNASWCIHLNNWLQQSLTAKHNNKARTLDCSIPDRIGIYCNYEEGTLSFYNSRNKTLLHTFRTKFQQPVIPAFMVWNGSFSVQTGLQVPSIVLSGQKRNSNTSSSNASLT", "length": 495 }, "evidence": [ { "id": "F1S7M1", "url": "https://omabrowser.org/oma/group/F1S7M1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7TPM6-1", "protein_name": "Fibronectin type III and SPRY domain-containing protein 1", "gene_name": "Fsd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDQREALRKIITTLAMKNEETQTFIYSLKQMLLNVEANSAKVQEDLEAEFQSLTSVLEELKESMLMKIKQDRASRTYELQNQLAACTRALESSEELLETANQTLQASDSEDFSQAAKEIKDGITMAPAFRLSLKAKVSDNMSHLMVDFAQERQMLQALKFLPVPSAPTIDLAESLVSDNCVTLVWHMPDEDSKIDHYVLEYRKTNFEGPPRLKEDHPWMVVEGIRQTEHTLTGLKFDMKYMNIRVKACNKAVAGEFSEPVTLETPAFMFRLDGSTSHQNLRVEDLSAEWDAMGGKVQDIKAREKEGKGRTASPVNSPARGTPSPKRMSSGRGGRDRFTAESYTVLGDTLIDGGEHYWEVRFEPDSKAFGLGVAYRSLGRFEQLGKTAASWCLHANNWLQASFTAKHANKVKVLDSPVPDCLGVHCDFHQGLLSFYNARTKQLLHTFKAKFTQPLLPAFTVWCGSFQVTTGLQVPSAVRCLQKRGSATSSSNTSLT", "length": 496 }, "evidence": [ { "id": "F1S7M1", "url": "https://omabrowser.org/oma/group/F1S7M1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BTV5-1", "protein_name": "Fibronectin type III and SPRY domain-containing protein 1", "gene_name": "FSD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEQREALRKIIKTLAVKNEEIQSFIYSLKQMLLNVEANSAKVQEDLEAEFQSLFSLLEELKEGMLMKIKQDRASRTYELQNQLAACTRALESSEELLETANQTLQAMDSEDFPQAAKQIKDGVTMAPAFRLSLKAKVSDNMSHLMVDFAQERQMLQALKFLPVPSAPVIDLAESLVADNCVTLVWRMPDEDSKIDHYVLEYRRTNFEGPPRLKEDQPWMVIEGIRQTEYTLTGLKFDMKYMNFRVKACNKAVAGEFSEPVTLETPAFMFRLDASTSHQNLRVDDLSVEWDAMGGKVQDIKAREKDGKGRTASPINSPARGTPSPKRMPSGRGGRDRFTAESYTVLGDTLIDGGEHYWEVRYEPDSKAFGVGVAYRSLGRFEQLGKTAASWCLHVNNWLQVSFTAKHANKVKVLDAPVPDCLGVHCDFHQGLLSFYNARTKQVLHTFKTRFTQPLLPAFTVWCGSFQVTTGLQVPSAVRCLQKRGSATSSSNTSLT", "length": 496 }, "evidence": [ { "id": "F1S7M1", "url": "https://omabrowser.org/oma/group/F1S7M1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S7M1", "url": "https://www.uniprot.org/uniprotkb/F1S7M1" } ], "pmid": "" }, { "name": 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"GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "F1S7M1", "url": "https://www.uniprot.org/uniprotkb/F1S7M1" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1S7M1", "url": "https://www.uniprot.org/uniprotkb/F1S7M1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "F1S7M1", "url": "https://www.uniprot.org/uniprotkb/F1S7M1" } ], "pmid": "" }, { "name": "regulation of mitotic spindle organization", "id": "GO:0060236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060236", "evidence": [ { "database": "UniProtKB", "id": "F1S7M1", "url": "https://www.uniprot.org/uniprotkb/F1S7M1" } ], "pmid": "" }, { "name": "regulation of cytokinesis", "id": "GO:0032465", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032465", "evidence": [ { "database": "UniProtKB", "id": "F1S7M1", "url": "https://www.uniprot.org/uniprotkb/F1S7M1" } ], "pmid": "" }, { "name": "cytoplasmic microtubule organization", "id": "GO:0031122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031122", "evidence": [ { "database": "UniProtKB", "id": "F1S7M1", "url": "https://www.uniprot.org/uniprotkb/F1S7M1" } ], "pmid": "" }, { "name": "regulation of cell division", "id": "GO:0051302", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051302", "evidence": [ { "database": "UniProtKB", "id": "F1S7M1", "url": "https://www.uniprot.org/uniprotkb/F1S7M1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 492, "end_pos": 494, "annotation": 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"uniprot_canonical_ac": "F1S7M7-1", "uniprot_ac": "F1S7M7", "uniprot_id": "F1S7M7_PIG", "mass": { "chemical_mass": 36401.0, "monoisotopic_mass": 36401.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1S7M7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7M7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1S7M7", "url": "https://www.uniprot.org/uniprotkb/F1S7M7#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S7M7", "url": "https://www.uniprot.org/uniprotkb/F1S7M7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1S7M7", "locus": {} } ], "crossref": [ { "id": "F1S7M7", "url": "https://alphafold.ebi.ac.uk/entry/F1S7M7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15226", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15226", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S7M7", "url": "https://www.uniprot.org/uniprotkb/F1S7M7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7M7-1", "url": "https://www.uniprot.org/uniprotkb/F1S7M7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKEVTTETISWHESISGTNHSMVTEFIFLGLSNSQELQTFLFVFFLVFYVGIVFGNLLIVLTVASDSHLHSPMYFLLANLSLIDLCLSSVSAPKMIADFFSKCKVISFKGCLAQIFLLHFFGGSELVTLIAMAFDRYVAICKPLRYTTIMSSNVCVGIVAAAWGTGFLHSVSQLAFAVNLPFCGPNEVDSFYCDLPRVIRLACTDTYRLDIMVIANSGVLTVCSFVLLIISYTVILVTIQHLPSQKSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVFCSVVTPLLNPIIYTLRNKDMKTAMKRLRKWNMNSRIKP", "length": 326, 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isomerase A-like 4E", "gene_name": "PPIAL4E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A075B767-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4H", "gene_name": "PPIAL4H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTDDKSIYGEKFDDENLIRKHTGSGILSMVNAGPNTNGSQLFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WP50-1", "protein_name": "Secretoglobin, family 1B, member 15", "gene_name": "Scgb1b17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMLAGAVVIFGVALLLLSSWGDCGICPAMKEDVHLFLNGTSEEYVEYVKQYKDDPEILENTEKIKQCVDSTLMEEDKAHANGFIEKIEASPLC", "length": 93 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPA9-1", "protein_name": "Secretoglobin, family 2B, member 18", "gene_name": "Scgb2b18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQSCYSEERIRNILLEPKIMEAMVASPECRSYHSFNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPG5-1", "protein_name": "Predicted gene 13283", "gene_name": "Gm13283", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLADLRSVPGHQCLRDRTDFPCPWKEGTNITQMTLGETTSCYSQSLRQVLHRFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPY7-1", "protein_name": "RNA binding motif protein Y-linked family member 4", "gene_name": "Rbmyf4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKR", "length": 166 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQA9-1", "protein_name": "Secretoglobin, family 2B, member 21", "gene_name": "Scgb2b21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACVPFFEGYASVVSGSRVWMYQEFQAFDATAEEKVALEKIQGCYREESLRNILLEPKIMEAMVASPECLSYYSSNNIRCILDLLSKLLGQ", "length": 112 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQJ0-1", "protein_name": "Secretoglobin, family 1B, member 11", "gene_name": "Scgb1b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLVAAVVILGAALLLLTSGGDCGICPAIKEDVRLFLNGTSEEYVEYVKQYKDDPVILENTAKINQCVDSTLTEKDMTHTTTFLKKIEDSLLC", "length": 93 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQP8-1", "protein_name": "Predicted gene, 21698", "gene_name": "Gm21698", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHGQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR36-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r90", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNEAMKTTEEVALQIVLLCQFGIGTMANILLFIHNFSPLLTGCQLRPKQVICTNMAVSSILILFMTVFPNNVFVVQRNLMNDLQCKLEYFLRMVARSINLCSTCVLSTYQFVTLLPGNFGEMMVRGRRSKVISYSCCSCWLFGVLYNVYIPMKVSGPQNTHNKTDIKSKWFCVTSGFSVGIMFLWFAHDAIFISIMIWTSVSMVLLLYRHYQRLQYIFPPHQGTRGYAEIRAAHSIAMLVVTFVSFYLLHCICFILHIVFVDSRLWLRHVGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYRKPVI", "length": 309 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR44-1", "protein_name": "BTB domain containing 35, family member 15", "gene_name": "Btbd35f15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR49-1", "protein_name": "Secretoglobin, family 2B, member 11", "gene_name": "Scgb2b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQGCYSEERIRNILLEPKIMEAMVASPECRSYHSLNNFRSILEFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSM5-1", "protein_name": "Predicted gene 29049", "gene_name": "Gm29049", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSLKKKSRRKPSSQALGNIVGCRISYGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELHSDERILNLKVLPHKVVFLQVRDVHLASALVCREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKDPVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANSTVYCIKFLGDLHIYVYTLVSNIT", "length": 227 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSN2-1", "protein_name": "BTB domain containing 35, family member 16", "gene_name": "Btbd35f16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLLFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLNFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WUL8-1", "protein_name": "NBPF family member NBPF19", "gene_name": "NBPF19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLFHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEEHISFALYLDNRFFTLTVTSLHLVFQMLVIFPQ", "length": 3843 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WXS9-1", "protein_name": "TBC1 domain family member 3I", "gene_name": "TBC1D3I", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087X179-1", "protein_name": "TBC1 domain family member 3E", "gene_name": "TBC1D3E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDQAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0A0MQP3-1", "protein_name": "BTB domain containing 35, family member 12", "gene_name": "Btbd35f12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDSDLSITPLEVPQGLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YW58-1", "protein_name": "Immunoglobulin heavy variable V8-2", "gene_name": "Ighv8-2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRLTFSFLLLLPVPAYVLSQVTLKVSGPGILQPSQTLSLACTFSGISLSTSGMGLSWLRKPSGKALEWLASIWNNDNYYNPSLKSRLTISKETSNYQVFLKLTSVDTADSATYYGAWR", "length": 119 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXW2-1", "protein_name": "Predicted gene, 20773", "gene_name": "Gm20773", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKIFKVEKS", "length": 232 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXX7-1", "protein_name": "Predicted gene, 20807", "gene_name": "Gm20807", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHTFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKVLEVEKS", "length": 232 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0B4J1J8-1", "protein_name": "T cell receptor gamma, variable 4", "gene_name": "Trgv4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNPGSQALLPLYLPWEANLADENPLLKVVIFLCLLTFGHGKLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG", "length": 138 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JE01-1", "protein_name": "Predicted gene, 21663", "gene_name": "Gm21663", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADPPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JGR8-1", "protein_name": "Predicted gene, 21680", "gene_name": "Gm21680", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWRMWMAHRQTTSPVPVTSKKQFEKEEKELIKKIQLTTKEINELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELVLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JMD5-1", "protein_name": "PRAME family member 33", "gene_name": "PRAMEF33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLMKTPHLETLQAVLRGLDTLVAQKVRPRRWKLQVLDLQDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPRMGEHQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQELEVWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNIKEHLEHLLRYLKNPLGAFIFSDAYLADRDMECLSQYPSLSQLKELRLIHILMWTTNLQPLGALLEKVAATLKTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLDYKGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPTCGSWPSEKVDFHLCS", "length": 474 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JNH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC124905359", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFFSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHCSTVMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDNFFCDVRQVIKLACTDMFVVELLMVFNSGLMTLLCFLGLLASYAVILCHVRRAASEGKNKAMSMCTTRVIIILLMFGPAIFIYMCPFRALPADKMVSLFHTVIFPLMNPMIYTLRNQEVKTSMKRLLSRHVVCQVDFIIRN", "length": 316 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JTV6-1", "protein_name": "RIKEN cDNA 4931429L15 gene like", "gene_name": "4931429L15Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQFNPFSQDTWRHGHRRAYSNISERLSCLTLQEPSVSHLYQIFSPGDRRSYLLDDSLSNSIQRESLAVPMGLEDSGSRGQQKQQQPGAVLEDLEEQEIAPTDVKYRLQLLDEAPLRSKSSSVQSQGHKPGWIPSSKTHREWFKPWKMDMTYPENERSHSGHTQGRRMTPRAQWRHVEYDSQDQDTQSPVWSQALFPGLDKSSQGVIQCTQHVSREREMVSGWSMTHAPQEMGQAKQGPAFLKTKGTAKFNVATTARMSCLPPLKLLEKKVKSRCPPNTPGIFQDWRAQPQGLYGSDERLLAPFEDQVNTRVTYMPLFTEKVKFVSPKTAVSNPKQTHSQLSRTNQPAFPGQFRNWTSGREHLEKGLPE", "length": 368 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JVP7-1", "protein_name": "40S ribosomal protein S26", "gene_name": "Rps26-ps4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKKRRNNGRTKKGRGHVQPIGCANCSWCVPKDKAIKKFVIWNIVETAAVRDISEARIFDAYVLPKLYVKLHYCVSLAIHSKVIRNQSHEARKDRTSPPRFRPAGAAPRPPPKPM", "length": 115 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW93-1", "protein_name": "High mobility group protein B4", "gene_name": "Hmgb4l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRDKDRYQREMRNYSGPRRERRRRDPDAPRKPPSSFLLFSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYHQCQRGE", "length": 168 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW96-1", "protein_name": "Zinc finger protein 94 like 1", "gene_name": "Zfp94l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRGSCDVMLESLRNVASLGHRIGTPDGLLRLKREDMFWLLTVARWSSGSMGDKNLEDMEFLEEVGLRHLPHEELFCSQIWQRITRELTKVRDCRVRVGENGSPMKRDNREDEYSKHSSQNSVFQVHHRECHEEEANERDFGCSHHLRTSTGEKSYKCEKCHNASHWFSSLQSHQGVCDRPRWNKSVSQFKIFRQWPLFHYQQSMPNGENAQEYEACGNAGKNSSGQTALFVHTAEEPYSCEECGARFSQSSYLQVHQRVHTGEKPYKCEECGKGFGWLSQLHAHHQSHTGEKPYTCDACGKGFSYSSHLNIHCRIHTGEKPYQCEECGKGFSQASNLLAHQRGHTGEKPYQCDACGKGFSRISDFNIHIRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCNTCGKSFRRSSDLNVHCRIHTGEKPYRCEKCDKVFSQFSSLQVHQRVHTGEKPYQCSECGKGFSVGSQLQAHQRCHTGERPYQCEECGKGFCRASNFLAHHGVHTGEKPYRCDMCGKHFRQRSYLQAHHRVHTGEKQFRCEECGKGFSWSSYLQAHQRVHMGEKPYKCEECGKGFSWSSSLLTHQRVHAEDEGQKDLSSSGGSYRK", "length": 616 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JYP5-1", "protein_name": "Olfactory receptor", "gene_name": "Or8g52b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEGNHSRVTEFILTGLTDKPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSHLQTPMYFFLSGLSFIDLGYSTVIIPKMLVNFVTEKNVISYPGCMTQLYCFIAFVLCECYMLSAMAFDRYVAICNPLRYNVTMSYQVCFWMIGGVYSIGFIEATIHTVCMLQVFFCKANVVNHFFCDLLPLFQLACSSTFVNETVLLCLSTLNFCVPTLTILSSYSFIIARIIRIKSTESRFKAFSTCSSHFSSVAVFFGSLGFVYFQPSSVSSKDQGKVSSVFYTIIVPMLNPLIYSLRNKDVKLALNKLFQKKIFHM", "length": 312 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K381-1", "protein_name": "Killer cell lectin-like receptor, subfamily A, member 4", "gene_name": "Klra4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQEVTYSTLRFHNSSGLQNQVKTNETQGPRETGHRGCSVSWHLIMIPLGILCSILLVTVAVLVTHIFQYSQEKHELQEALNKLHHNYSTMQNESYLNEEMLGNKSSECDAYKSVLDSLNRQQNTCLRLTNIVLDCLQHKGRQVNVHLFCCGIKCYYFIMDKKQWKECEQACQGCKLSLLTIDDEDELKFLQLQVTPDSYWIGLSYDNKKHDSAWIDNNPSKL", "length": 224 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K3S0-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c109", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNQSFVNEFILLGLSQNPQIKKISFVIFLLVYIATLVGNMMIVVTIAYSPALLGSPMYFFLAVLSFLDACVSSVVTPKMIVDMVYERKSISFECCMTQVFAVHFLTAVEVIVLAAMAYDRYVAICKPLHYSSIMNRRLCGTLVGVAWAGGFLHSIIQIAFTLPLPFCGPNVIDHFICDLFPLLKLACTDTHIFIILVFANSGSICIIIFSFLLISYGVILFALRAHSSEGRRKALSTCGSHITVVVFFFVPCILIYARPTSAFSFEKNVFVFTDVLTPLLNPMVYTFRNKEMINAIRKMWKRLIVVSDKY", "length": 311 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K622-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH", "length": 169 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K698-1", "protein_name": "Lamin tail domain containing 1", "gene_name": "Lmntd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHLASSHRVQKSSLARPERRAKSPSYTDISFWVPVMHRVGSQYQFESVCEQSSGYPGMPAQQVTPVPSQRGGILRKEEKTGTITPSKQHSSVHFFPKVMDSSSTLHLLSGSFSHEASANFHQIPSAQDSLSPGGLLTSKSNVPSCSRKDSIPGKQSTHQAASPGTSLMTLKKQPKPSSDLDTYVLGDGEDYFLSLFGDSKKLTSHTSQAEDVSKHLSVILEEVGQFVSSSLGDIKIAEVNVKGFFVRLVNSSNEKEVEIGNYILQQNVNGQAVSLYRFPHNITMQASGTVTVWAAASEAKPQQPTDFVWEEQSRFRSSPDCTTILCKPSGEAIAWYTPIHWKQAWEKLETDIEFERCSVVIPSLKSHIFGRTTSSVSSINKEKQEPTQKTPPQVCSVLLREKEILLTVLPNKSPWCRSPDTPPHPYSSLIEWHDSDFPGSSLGTQPKPQSTKPKPDPGTKEKKSTR", "length": 467 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6E6-1", "protein_name": "Rho GTPase-activating protein 20-like", "gene_name": "LOC120093152", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDEELVRANKTCTCKTIFFYWATGNALATFRSEEQKVQWYTFLTSRSISEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHKIEDYQLWFSPGHKEAPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERRRKSCMTSCFHGGCVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTKSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAVASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQAEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKMFYGRDLSKKLSIIQFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKANTKELEMSSAVPHEGGPTAGHNGTTSKYNVPQEIILHD", "length": 835 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6V9-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVVFFLGQGSYGRVRLAWHRRTQALVAIKTVEISKDTIRGILSEMTTLESLNHPNIISLYEVLITGTGVHFILQYAPGGNLGKLISEEGPLPEEKAKKMFGQVVSAIRYCHSLDIVHRDIKPQNILIDGEGNIKLIDFGQAIKCKPGTLLSRHCGTRDFNAPELVLREPYDGKSSDVWSLGVVLYFFTTGYLPFRGKTINDVEERITTGTYTIPTHLSGQLENLIHQILRVSPDMRPSVEEIENHPWIKKCEFKILPKTDPDYKIIEMLCAMGYKAKDILESLQKKRYDEPMGAYLSLKDHVSKGFDVGYITPAKPGDPCPPPPPSPAHPSVFGLPLRRRASEPIFGLHHRPPSREQNPLDLILSGLKMSRCVSMPPIAVYYPKKERSTSTRALHSTPVACPCVSNNMSEVEIILPPKQDIEMNTSSPPQRMGWFKRLRKGIRDCFSRLCCLPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K894-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHLLNVTEFIFLGLSPNKEGQRVCFVLFLLLYMAIVLGNLLMVVTVAASRNLGSPMYFFLSFLSFVEICYSSTTAPKLIFDLLAEKKSISVWGCMTQLFFMHFFGGTEIFLLTMMAYDRYVAICKPLHYTSIMNQQVCAVLVGSAWIGGFVHSFSQILLILPLSFCGPNVIDHYFCDLLPVLKLACSDTFLIGLLIVVNGGTLSVISFVVLLASYLVILFHLRTQSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRPSDTLPVDKMIAVFYTVITPLLNPLIYSLRNAEVKKAMKNLWFRIMKADEK", "length": 309 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KB39-1", "protein_name": "Myb/SANT DNA binding domain containing 5 like 1", "gene_name": "Msantd5l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQREANQGESLENTEESNVGKSVKEEEQRPSGRSRSSWTDSEIRVFLQEWEVVEQEMGQPGRKLHKKTKSLCQRLYQQGLKKSWKSCFHLLLSLQDLHRTLCNERPGIEPLFSPYSEALYRILGSTPHESWFPGPLYDEADDSMLPVYPQPPMYQPSDYGITVPSAQLQGNPVPMMCQEDSPFPTWEPWNPSYPLSVPHLLPGFAPGDPSLQQPWSMCDLHQDPQ", "length": 225 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KBC9-1", "protein_name": "Leukocyte immunoglobulin-like receptor subfamily B member 3-like", "gene_name": "Lilrb3l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTFTFTALLCLGLTLRLWIPVLTGSLPKPILRVQPDSVVSMGTKVTFVCEETIGVKESHLYRNGNLQRTVLKNHQKPTNKTEFSFSNVDQQMQQYQCSYRTQTKSSDYSEPLELVVTGAYSKPSLSAQTNPVVTSGGYVTLKCEPSQDNHTLILTVEGSQKHSWRKDPECNRYTEKCHALFYVGPLTSNQRWIFRCYSYEKHTPQVWSAPSEPVELLVSGKLQKTTIKAEPGSVIRSGRAMTIWCQGDLDAEIYFLHKEGSHNTQSTQTLQQPGNKAKFLIPSVTQRHAGQYRCYCYSSAGWSEPSDTLELVVTGIYYYGVKLSGLPSPVVPEGGNVTLHCTSHSNYDKFILTKEDQKFTSSLDAEYIPSTGQHQALFVMGPMTPNYSGTFRCYGYYKHTPQLWSVPSELLKIFISGPSRKPSLLSHQGHILEPGMSLTLQCYSDTKYDKFALYKEGGTDIIESFSQWTKAGLSMTNFTLSVMPNSTVHSGENVTLMCWSTYSVDTFILSKEGSGQPPLRLKSKIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLKALIGVSVAFLLFLFILIFILLRRRHQEKFRKDDEDAQKGKELQLSTGAAEPVTRDRGHQKRSNPAAATQEESLYASVEDMETKDGVELDTWKPPEGDPQGETYAQVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQEVDSQATESEEPQDVTYAQLCSRTLRQGTAAPPLSQAGEAPEEPSVYAALATARPGAVPKNKKQ", "length": 761 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KIH5-1", "protein_name": "Major histocompatibility complex class I LLA precursor", "gene_name": "mhc1lla", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTGKVLFVLFLLSAPTTVLTDSHSLWLLGTYIKGETQFPKLSFTVMLDDLRVGFYNSETKEFIPRDNTTNEDEAVSDVLTVIQNTLEPFMMSTLTFKNGTESPQLFQITWHCELLDNDKPGQIIFKIAFSGSTTDEVSFYNDNFTCQCQNNMATVPLESFQMHYETVCYPNCIATIRDYLKKRQTQVNGKVQPKVRLIKKVHPKSGGFRLSCLATEFYPHSINLTLLRDGQPVSDHEVTGGNLLPNGDGTYQMRKSLEIRADEREKHKYTCSVSHLSLDKILDIDFEFDPSFLIKIVIPVVVLLSLMLVLTAVLIHKCKNKRAESKETITTASTPEPTEMSETLRK", "length": 346 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLESMMACCMSEEAKESKRINAEIDKQLRRDKRDARRELKLLLLGESGKSTFIKQMRIIHGTGYTDEDKRGYTKLVYQNIFTSMQAMIRATEHLKIPFRFEDNKKNALLVREVDVEKVCSFEQPYVAAINKLWMDPGIQEAYDRRREYQLSDSTKYYLNDLERISSRGYMPTQQDVLRVRVPTTGIIEYPFDLENIIFSYLSDLERISDPSYLPTQQDVLRVRIPTTGIIEYPFDLQSIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILCSHLVDYFPEFDGPQNDAQSAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQHNLKEYNLV", "length": 400 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILG2-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVESPEHSDADFTYDYELIRRGGLIFAAVLFCLGMVIIFSKKLRCGKSSATHEDNGDL", "length": 59 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IU63-1", "protein_name": "Metabotropic glutamate receptor 5", "gene_name": "grm1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMLILRMNFFIVFLLFCTRLHLSTERSAVSRAASRSVARMDGDIIIGALFSVHHQPSAEKVAERKCGEIREQYGIQRVEAMFYTLDRINSDPYLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEREGPKWCVEGNPSAQPPATKKPIAGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARALLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELASQEGLCIAHSDKIYSNAGEKHFDRLLRKLRERLPKARVVVCFCEGMTVRGLLMAMRRLGVAGEFLLIGSDGWADRDEVVEGYEEEAVGGITVKLQTEEVTSFNDYFLKLRLATNNRNPWFAEFWQHRFQCRLAGHPQENTNYRKNCSGYESLEDNYVQDSKMGFVINAIYAMAHGLHDMHEHLCPGHVGLCEEMDPIDGSKLLDFLLKTSFAGVSGEDVWFDENGDSPGRYDIMNLQYVEPGVFDYINVGSWHEGILSIDDYMIQMNRSEMVRSVCSEPCSKGEIKVIRKGEVSCCWICTPCKDNEYVQDEFTCKACELGWWPDEELQVCEPLPLRYLEWSHPESIAAVVFSCLGILVTSFVTLVFILYRDTPVVKSSSRELCYIILAGIFLGYICPFTLIARPSIASCYLQRLLVGLSASMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVVIAFILISMQLTLEVTLIILEPPEPIKSYPSIREVFLICNTSNMGMVAPLGYNGLLILSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITTSFSVSLSVTVALGCMFTPKMYIIIAKPERNVRSAFTTSDVVRMHVGDGKIACRSNSLLNMFKRKKNASGNANSNGKSVSWSEPGSRHPPKGEHMWHRLSVHVKKQEAGSNQTAIIKPLTNTYNNPGMEFSDLSTKTLYNVAEEDEIDPIRYNPSNSPHLMAPVSKPMKEVGANLTFYTPEQHVPQQNSVLPQHAMIEHFQDDVVKYNSNMADLDEIISLPEPTDGIILALQPQVLHPHPILPMNVYQDEPSSPLEEVENEQFGLLHGYMYDNAQIHDEEELVQIKMAMEDSMALMPPSPFRDSLGSGSPVRNSPVSESVLCTPPSVTYASVILRDYKQSSSTL", "length": 1158 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IUN8-1", "protein_name": "Trypsin inhibitor ClTI-1-like precursor", "gene_name": "spink2.9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLAQIVLLLCLSVMATAADKCPSVPNCSRYHPHACTMEYWPVCGSDGNTYGNECELCATIFEEKLNIILISKKGEC", "length": 76 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4J2B9-1", "protein_name": "BTB domain containing 35, family member 23", "gene_name": "Btbd35f23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPVSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFTNILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQKCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICNLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNQEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A140T8Q5-1", "protein_name": "BTB domain containing 35, family member 21", "gene_name": "Btbd35f21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMILYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GQX3-1", "protein_name": "Cortexin domain containing 2", "gene_name": "Ctxnd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCVLMEDSSMSNGIDVDKGFAIAFVVLVFVFLIVMVFRCVKLVKNPYEVSSTTADLPLN", "length": 59 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GRH6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 3", "gene_name": "Zscan4-ps3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVRQFPHGARRASQGTPSHHVDIQSPPTTADVTMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGFPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCKSHQKRFCRDAKLYKCEECSRMFKHARSLSSHQKTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GS00-1", "protein_name": "Predicted gene, 36210", "gene_name": "Gm36210", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHPGSPAAPGVSEPGPRELCAFVSGASAHMLRALQPRRIRPSKRRPNHRRFLHNQICREFAKIEAATQHLALTILSQKAPAQRPPFRRPPPPPPSPFLGVACAEAPMEAPHGSPSLSPVALDTSTLDLFDDILLTPTPRPLVTPDSFCQTLPAGNPQVASDVISHALGPGDQGQPTPIQAPRFSNLLLPPQKAQGGSLEPAALGCGWVDSWEAPYACDPQGVLDSWGAL", "length": 229 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSB3-1", "protein_name": "Family with sequence similarity 236, member D", "gene_name": "Fam236d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATEGVATAHTMLTSRGPRDTREPAPPTRSWRSRFQRALARVSKFFRRGRRTARG", "length": 72 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSI2-1", "protein_name": "Family with sequence similarity 236, member C", "gene_name": "Fam236c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATAHTKENSSRGPRETREPAPCTRSWRSRFQRAVARVSKFFRRRRRST", "length": 66 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYU6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 2", "gene_name": "Zscan4-ps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEGNVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSVPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYV3-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 1", "gene_name": "Zscan4-ps1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWAIQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYTLTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNTSCNATEGNVGERCGGNEMDSLLIIQKEQHPEHEEGNVVCRFPHGARRASQGNSSHHVDFRSALTPADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSSDNIPRKKTDSLSINKRIYHPEPEVGDIPYGVPHDSTRASQGTSTCLQESLGECFSEKDPREVPGLESRQEEPISDPVLLGKNHEANLPCESHHKRFRRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCFTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1D5P3Y4-1", "protein_name": "Large ribosomal subunit protein uL24m", "gene_name": "MRPL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLSALLRLAAPPKLPKGYRHGTWRPGTAAERLRNPPGQRRKKIFVEPISREDWKVFRGDTVQVLTGKDAGKQGMVTQVVRARNWVVVEGLNTHYRYVNRDAKYSSTYIASEAPLLLNQISLVDPEDRKPTEVDWRYTEEGERVRVSLRTGRIIPLPLWQRRDGIVPEQWIDGPKDTSVDDALDKTYTPSLKTFEEEIMDAMGIVETRRAKKSYWY", "length": 216 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PNZ8-1", "protein_name": "ODF3A protein", "gene_name": "LOC124417034", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPATKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5RLF0-1", "protein_name": "F-box and WD-40 domain protein 27", "gene_name": "Fbxw27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METHLPSLPLMKIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLFCDMVTLQLQDKETWKQFFVYRTWQEHSKTRANPRDFTYKEIPLQYGPCGYACYISGCGITRKGQDKSVVCMVNSKNTISTWDVHKSVITWVSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNILESPCKSLKAVITKDDPIVLVSDILGNLYIFRIPDLHLISTVNVLPCDIDEIYCSPQKKWVLLSKKQPYILPKVFYMSSLLRTSEFSAPVSTLLEISLCQEAFWTPRREDRLTLMSRSGCSKITKFETYDMKLEEFGNKIIVKGNSIAGFLLPYYTESLNWFGVSDKDTIVCSTEFSLLLFTNNGHRLQTFQYFSETIVRLSVDPVHVIVTCNDGSLDVYAWEERSLLLRKCYRLKNRRHLSPRGFINKTLCDDVSIIQLMIDGHDTWFLMAYALNICS", "length": 466 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1P8ASP4-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4KB", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVSDKHVESNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRDEEVQYNDDENVNGGDLDMEEGEILGKEGIGETLKKKLESVDEFGDIKSGQFRENNLAFNGDDGFPLICKSWIRVYNYLSYKCHGRNQRRERECEKRKEIEPDRERRKERGSVDRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSEKDRDKGREFQSDREKHKSLDDGYGEVRHKHSGHSRHDAEDDLELRSPTSVNGHDPNSGDVKETRGNVERTRIDNDDKGDVVVWEVEQEDEELNLIEESRRRTQAIMEKYKKKLEQQNGFSSHDLELANIPKQSSTVADVLGSGTLGPVTSAVNQAKAGLDIDAVDGEVAKLSSAVGESPAQLVISDSDRTLASTGLGEGSPKDKISDDMFTDDIFGESPADSQKMVCTLTQIIDLVFIEFSNSGFICFVFPVHHLTRYSRNGLPFVHYIFVGYLRGKGNGIPIVRSGLDDNWDDAEGYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKAELGEPEEVAIKIIRNNETMHKAGQTEIQILKKLAGSDPENKRHCVRFLSTFKYRNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPDNMLVNEGRNTLKLCDFGSAMFAGTNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELFSGKIMFPGSTNNEMLRLHMELKGAFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTRKTTKRMMVNIKPKEFGSVIKQRYKDEDSKLLVHFRDLLDRIFILDPQKRITVSQALAHPFITGK", "length": 834 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BFV1-1", "protein_name": "Bax inhibitor-1 family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGLKDFSRISPAIQSHLMRVYFSLFCILAASAFGAYLHMRLNIGGTITKLGWVLSLLEHVVSCPPYKHKIRFSLLLLFGVLHGASVGPCIKSTIDIDSSILITAFLGTAVIFFCFSAVAMLARRREYIYLGGLLSSGFSLLTWLKNSDQFASATVEIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIMWNTSADRIRRNNEET", "length": 226 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1W2P6Q8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7S8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKMRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLIGGLNTPLHESDFSGVTPQQQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLHINPEDGMADHSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQATRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPFDVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGFATNDSEHITYLEHSPYEKFSKEDLKKAQDALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSCYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLEEDVQRQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7Z8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P855-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAIMKYRKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2PP81-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 5", "gene_name": "TAF11L5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A1Y7VLT7-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1Y7VNG9-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRHRGKNENESEKRELVFKEYGQEYAQVTKMLGCLWLEAMCFDGVKRLCHIRGKLRKKVWISTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINETDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YCH8-1", "protein_name": "Predicted gene, 47985", "gene_name": "Gm47985", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGAPHNSAKRHRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPIVLQRAWLTWQLSHAGAALHWALHTVKSILTSQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YD13-1", "protein_name": "Predicted gene 8947", "gene_name": "Gm8947", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKREQLLDKKAEDKQPPESRCNNGRSSKSSPMGKENTWPSREAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDQRSQPRSPVRTLKRSRSGDRQGAPHNYAKRRRQTFPPEASCSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYIWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 301 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YE43-1", "protein_name": "Predicted gene, 47996", "gene_name": "Gm47996", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGVPHNSAKRCRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286ZIN6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258935", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANLTSMSGFLLMGFSDDHKLQILHALLFLVIYLLALTGHLLIITITTLDHHLHSPMYYFLKHLSLLDLCFISVTVPQSIANSLMNNGYISLGQCILQVFFFIALASSEVAILTVMSYDRYVATCQPLQYETIMDPWACRQAVIAVWVTGGLSGLTHTAINLSVPLCGDRVIHQFFCDVPQMLKLACSYEFINEIAVAAFTTSTAFFCLISILLSYTRIFSAVLRIPSAQGRTKVFSTCLPHLLVVTFFLSAAGFEFLRPPSDSQSAMDFMFSIFYTVVPLTLNPVIYSLRNKAMKAALRKVLSKEEFAQRKKYFKALFQL", "length": 321 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZIP8-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259124", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "QEYKANGGDNTTTIIHFVLLGFSDFPHIRPALFVVFLVIYILTLTWNLCLIVLIRLDSHLHTPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECCLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVQVLTAIFTVFFGIINALVIMMSYVYIVISVMKITSAKGRSKAFNTCASHLTAVTLFYTSGIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 316 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZLI4-1", "protein_name": "C-C motif chemokine ligand 24", "gene_name": "CCL24", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFSPSSLIKASGQLQCPAGNRLLAPTLSSCIAALSPELPLLLSRHGRPVTVAASLLFLGLCAYSFAPADSVTMPSSCCIYFISKKIPESRVASYQLSNSSVCPQAGVIFTTRKGQKFCGDPKQLWVQKYMKKLDAKRKKASTRIRAMGTGAPVRRGPANSTSI", "length": 163 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZSE3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258059", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPKLQVLIFIFLFVAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEISFISSCIPRYLYSIATGDKVITYNACVIQVCFTDLCGVTEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSVQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZU87-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100152920", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILETMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDHYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSTVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSWRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZVC9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258401", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZWC4-1", "protein_name": "Zinc finger protein 16", "gene_name": "ZNF16", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLPLSQVPAMPSLRTRPGKAEMEPSVPGPSLRTPGTQVSVSDAPAVTHPGSALHGPLSCGDTEPGATPPHHQLADWDLRTEGSQLLQKEDASEDLESQAGTSEDYVGAGSQAPERGELCADVLGSDWGVPQGERLSLCQEGGFMPAYLLPGSPLEEPEIDTEPLERNFGLIITPVASPGEPEEETPQPFDACDQSVHCGVDLAGHEGLHAAESSFICGECGESVGLHSDLLRHRLSHRGEKPHVCAECGEAFSQSASLESHQRSHEPAKPFQCSTCGKAFGRSSSLIKHHKVHTRERPHACGECGRPFSRFSNLVKHRRVHTGEKPYRCSECGKAFSQSSSLLQHRRVHTGEKPHVCPVCGKAFSYSSVLRKHQIIHTGVKPYSCSACGKAFSHSSALIQHQGVHSGDKPYECRECGKTFGRSSNLILHQRVHTGEKPYECAECGKTFSQSSTLIQHQRIHNGLKPHECDQCGKAFNRSSNLIHHQKVHTGEKPYTCVECGKGFSQSSHLIQHQIIHTGERPYKCGECGKAFSQRSVLTQHQRVHTGEKPYDCEACGKAFSQRSKLVKHQLIHARE", "length": 576 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZX75-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100156955", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "IFIMEWENQTASSDFILMGIFSHTPTHIFLFSLVLGIFTVALLANTVMVLLICLDRRLHTPMYFLLSQLSLMDLMLICTTVPKMARNYLSGRKSISVAGCETQIFFSVSLFGAECFLLAVMAYDRYAAICYPLQYPQLMNWNVCGLLAASSWILGVFDGIVDIAATLSFSYCGSREIPQFFCDITALLRLSCTDTSTFETLVFICCVVMLLFPLSLIIISYTRVIITVIRMSSGEGRHKAFTTCSSHLVVVGMYYGAAMFIYMRPTSNRSPAQDKMVSAFYTILTPMLNPLIYSLRNKDVAKAFSRCWGREI", "length": 312 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZY56-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258501", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METDNDTQILEFLLLGFSKQPESQPIIFGLFCSMYLITVFGNLLIILAVISDYHLHIPMYFFLSKLSFVDICFTSTTIPKMLWNIQTQSKAITYEGCITQIYFLILFAVLDILLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLVPWIMSVLNSLLQTLMMMQLSFCTNFEIPHFFCELNQMIQLACSDTFLNTIVMYFAAALLCGGPFFGILCSYSKIVSSIYRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAAAHSSHSSATASVMYTVITPMLNPFIYSLRNKDMKRALKALFVKGPM", "length": 310 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZZP6-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHLPNYH", "length": 402 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7E2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258743", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFPDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKVACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7J9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258750", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVKEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLAFVDLCYATAITPKVLQNLMSTEKSISFIGCMVQLFVYGTFVTSDGYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSCFMGFLNACVNGSLTFQLNFCKSNKINHFFCDAPPILALSCSSIYFNIMLLAAFVGFNLMFTVSIIIFSYIFILAAILKISSAAGRKKAFSTCGSHLTAVTIFHGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMLNPLIYSLRNQDVREALKEIGKKML", "length": 309 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A951-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "LOC100514137", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVHMNVLTDALESINNSEKRGKRQVLTRLCFKVIVRFLTVMMKHGTPIGKFEIMDDPRARKIVVNLTGRLNKCGVISPRFDGQLKDLEKWQNKLLPSCQFGFIVLTTSAGIMHHEEAR", "length": 118 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ACV2-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDAPTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLIKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEDSAWNKLQFYHNPNFKRGCPNLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSTSTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHRISNFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSVASLSRPNPQSSSISEHHPNYY", "length": 402 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AEV7-1", "protein_name": "Uncharacterized protein", "gene_name": "WFDC10AL", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKWWGLQWLMLSCLAILPASGNWQERISASLEALTQSKLIPGMKPCKTIPTKEQCTYFCDLPRACPTGLLCCSASCGNVCMPPKGHGNRRSSHKISNFLFTAEPIKQQ", "length": 108 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AF12-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTNTKGKRRGTRSMSSSPFRKHGVVPLATYMRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRVYNVTQHAVGTVVNKQVKGTILAKRINVHIVHIKHSKRGDNFLKRVKENDQKKKEAKEKVTWVQLKHQTAPAREAHFVRTNGKEPELLEPNP", "length": 155 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AGK9-1", "protein_name": "DM domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPDEMPTVPCCPLDSTTGLETGAPWGIEFGPRRAIRRCARCHNHGITDQIKDQEHLCLFQACECHKCVLFSEHCSILPAESALKTMQELHLKRQLTQGLIKSGTTSPKAHSHVKKSSIQTGVLSKLPRCSADRSGIGIFVSVLDSSTLEEATNNFTFQEVTQAPCPAQQAPKTSDQDSDSASLEWQRKLEAAEALLTLRESSQAPSGPTPLLQPSAAPAPAGERGLQPPSRSLRPRPASSISLPIGHVGCISLLS", "length": 256 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AKK8-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100155397", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDVRNHSIVSEFVFLGFTNSWEIQLLLFVFSFLFYSSSMMGNLVIVFTVTLDSHLHSPMYFLLANLPAIDMVFCSITAPKMIGNIFKKHKAISFCGCITQIFFTHAAGGTEMVLLIAMAFDRYVAKCRPHHYLTIINPRICLCFLVTSWIIGLIHSMAQLFFVVDLPFCDLNVLDSFYCDLPRLLRLACTDTQELQFMVTVNSGLLSMGSFVLLIISYIFILFTIWKHASGGSSKALSTLSAHITMVVLYFGPLIFFYTWPSPTSHLDKYLAIFDAFITPFLNPVIYTLRNKEMKVAMRRLFSHLVHYRNIS", "length": 312 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AP00-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258730", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "SRHDLHCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLTGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCDHLAMVSWGVGCMAALGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSMPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTVVTSMLNPIIYSLRNKDVKAALRRTLGKKKVLAHR", "length": 322 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ARD5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258934", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLFYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AT12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLSFNRTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQFFIIHCIFMSESGILLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIFLRSYCTVFPIIFLLKRLTFCRNNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDILLIFVSYMLILRAVFHMPSQDARHKALSTCGSHVCIIILFYGPGILTTLAQRFGRHIPAHIHILLANVCVLAPPMLNPIIYGIKTKQIQEQVAHLFLKQK", "length": 313 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AUC4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MERINKSHPEEFILLGFADRPWLELPLFIILPMYFFLTNLSFLDMCYTTSIVPQMLFHLGGSEKTISYLGCAVQLYFFHTMGGTECLLLALMSFDHYVAICKPLHYTLIMNRCTCILLVATVWLSGMTYAVSEATVTLHLPLCGHNTLDHLICEIPVLIKAPCGEKGTNELTLSVVCIFMLAVPLCFILASYASIGHAVFKIKSSEGRKKAFGTCSSHLIVVFFFYGPDISMYLQPPSSISRDLPKFMALFHGVVTPTLNPFIYTLRNKDVKGAWGNLVRSVFTSK", "length": 286 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AXC2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVNEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEMLQNFVGTEQSISFIGCMVQLLIYGAFVTSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSYLIGFLNASVHVSFILPLNFCKSNKINHFFCDAPPILALSCSSIYFNVMLLAAFVGFNLTCTVLVVIFSYIFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 281 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AY25-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100155405", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLSNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSRRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDRFFCNLPLVIELACMDTYKVEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRLSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNHHVNSWKY", "length": 311 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B1Z6-1", "protein_name": "Short stature homeobox", "gene_name": "SHOX", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEELTAFVSKSFDQKSKESSGGGGGGGGKKDSITYREVLESGLARSRELGGSDSNLQDITEGSGHCPVHLFKDHVDNDKDKLKEFGTGRAAEGIYDCKDKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTASHLDACRVAPYVNMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYLMFPPPPFGLPIASLAESASAAAVVAAAAKSNSKNSSIADLRLKARKHAEALGL", "length": 292 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B9C9-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWRSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTECPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHHPNYH", "length": 402 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BB76-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100157512", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLGNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSHRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDSFFCDLPLVIELACMDTYKIEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRHSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNRHVNSWKY", "length": 311 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BC21-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152520", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYVAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BF45-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100513333", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPELQVLIFIFLFLAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEVSFISSCIPRYLYSIATGDKIITYNACFIQVCFTDLCGITEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSDQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BGE2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENNQSWIAEFILVGFQLSEEMELFFFIIFFLLYIFNLLANGMILGLICLDPRLHSPMYYFLTHLAVTDISYASSNLPNMLENLVKHKKTIPFVSCTLQMLFYLAFASVECLILVVMSYDRYVAICHPLQYTVIMNWKLCTVLAIISWACGFFLALVQVSLFLRLPFCGPQKVNHFFCEIRSVLKVTCGETWINKIFLFADGVFILVTPISLMLVSYVRILWAILKIQSKEGRKKAFSTCSSHLCVVGFYFGIAMMVYLVPDDSHQQEEQQKILFLFYTFFNPLLNPLVYSLRNAQVKAAFHRIFQKNRTM", "length": 311 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BIM6-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGKRSRRKSPGRQGRTCARTTRAGLSASVSHMERLLREGPYAQCLSSSARVFLAATIEYLTARVLELAGDEAQIVGRRCITPELVAMAVHNNALLSAFFGTLAISQVAPTQE", "length": 113 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BK27-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVTEFIFLGLSNSQELQTFLFVFFLVFYVGIVFGNLLIVLTVMIADFFRKCKVISFKGCLAQIFLLHFFGGSELVILIAMAFDRYVAICKPLRYTTIMSSNVCVGIVAAAWGTGFLHSVSQLAFAVNLTFCGPNEVDSFYCDLPRVIKLSCTDTYRLDIMVIANSGVLTVCSFVLLIISYTVILVTIQHLPSQKSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVFYSVVTPLLNPIIYTLRNKDMKTAMKRLRKWNMNSRIKP", "length": 274 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKA6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259008", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTFNCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLMGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCVHLAMVSWGVGCMVGLGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSIPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTMVTSMLNPIIYSLRNKEVKVALRRTVGKKKVLAHR", "length": 320 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKW4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258932", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILVTMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSTIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSLRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BLZ6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258167", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGGKNSTTITKFILLGFSEFPKLTAVLFSVFLRISLMTVSWNMGLIMLIRMDSHLHTPMYFFLSNLSLLDICYVSTIAPRMLSDFFKKYKFISFMGCTMQYFFSSLALTECCLLAAMAYDHYAAICNPLLYTAIMSPTLCVQMVAGSCVTGFFGSFIQLCALFQLHFCGQNVTNHFFCDLPQLLILSCSDTFFFQVMTSVLTVIFGLTSVLVIIISYGYIIATILKITSSEGRSKAFNTRASHLTAVTLFFGSGIFIYMYPNSGDSLSQNKLVSVLYTVIISMLDPLIYSLRNKEIQDSLSRWRKTIFSWCY", "length": 313 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BNL4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "TVLNARNVSTPKVFILLGFSDHPWLEMPLFIIVLAAYIRTLVGNISIIVVSRVDPNLDSPMYFFLSNLSFLDLCFTTTTIPQLLLNLWGPDKSISYGGCVTQFYMFHFWGATECIFLAVMSMDLQAICKPLRYPVIMHQQLCIFLVVMAWLSGLVNSLLQSSLTIQLPLCGNNKVDDFLCEVPVMIKMSCTDTTFNVAMLSIVGTFYSLVPLSLILVSYGFIVATVLRIQSSEGKKKAFNTCSSHTIAVSLFYGPVISMYVQPSAANSQDKNKLMSLFYSLVTPMLNPFIYTLRNKDMKGAMMRLLVSLYHQRRG", "length": 315 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BSD4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100525471", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENENSTVVAEFIFVGLTQSRNIQLLVFVLILIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNLRACYALLVALWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLMTLLCFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPAIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKRLLNQQLA", "length": 307 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A2R8VHJ9-1", "protein_name": "Predicted gene, 36245", "gene_name": "Gm36245", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTKNEEQNEDQSEGVVIPHIQDHHCLAILAFCFFFPLGYLAYRSSCKTRTYIEQKEYEKAKATSRCTFAFVLSSIAGGSIIFFCLFSRLFFM", "length": 93 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A3L7ICH5-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "LOC100756118", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYYKFSGFTHKLAGAWALESYSPQGLKPVASTEAPPIVFATPTKLTSSVTAYVYAGKNKVPELQKFFQNFFHLKRGLPDQMLYRTPMALTVGGTIYCLSALYMASQTPNK", "length": 110 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1LL21-1", "protein_name": "BTB domain-containing protein", "gene_name": "LOC112445444", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPLNSRNLQCRESGTGELQQPEAQAGPSYVSGSRKRKQSTGPSLGPESEMSHNQEEDLQQVVCTRQGKKVKIKSEYAYQTLFLNGETSDIKIRALGKVWCLHKRFLCQSDYFATMFRDSGKECHKDIIDLEINDQNINVESLQFVLGSLYRNEYVLIKPLQVPRVLATACLLQVEDLIQQCDKTMKETINVKTVCSFYVAAETYGLHSVKTGCFEWLLHNLMTHPSVELYKKLSTDLMNLVISSSNLFVMQKEIDIYTTLKQWMFLRLNPGWKGTMKQLLVNANNWFSRHKEHDGSISFLETKQGIVFQPVFKNLRFQHIICDLASTKVIEQDALIPSEWLSCVYKRQWYTLLRAQQYREIGPRDITETELEEYSMRCGKRIVRDGTYAWKWSGYNFGVHLYVVFTSHFIIFKRHAFSQPYDGSICLQPQRNIAFRLTLVYFGSSGKLSFRKTTGYKILTFEKDEEQMVMKLDSVALSFPLYIFCNFLFISLENPGN", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LLV6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIIIGTLITGYMVTCTCFLHYSCDSEEAHKATKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LUU6-1", "protein_name": "Guanylyl cyclase domain containing 1", "gene_name": "GUCD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTGPRCRRKQRPSGRPGPRGTRAPQHPTPDAGWTARRAAGAAGAEARGRDLPPQRKPAKPTAPGKGRPERGECPRRADRGGGDPEERAGGRPAWGPGAGRGGAWGRSRLPPLLPPGRWCWRPGKPARAGRALSSPVDARAAAGAGPGPWEPRAARVMRTEVDAEAAGPPLEPDEPTQSLSIQDQETAFLLEDSCQLKPGQPLPGRPWPSGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDAEFEQALQELRLTRSIWTIDLAYLMRRFGVRHRFCTQTLGVDKGYRSQSFYRKHFDTEETRVNQLFAQAKTCKVLVEKCRVSVQDIQAHLAQGHVAIVLVNSGVLRCDLCSSPPKYCCFTPSGPRCFCRSPDYQGHFIVLRGYSRAAGCVFYNNPAYADRMCSASISNFEEARTSYGTDEDILFVYADS", "length": 434 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1M0W3-1", "protein_name": "IF rod domain-containing protein", "gene_name": "LOC787600", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTCGSACFSSRSGVRSSSSCVTTQRYAPGRTFSCVSACGPRPSRCCITAAPYRGVSCYRGLTGGFSSRSVCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKSLNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEADTGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSLVEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAEAESWYRSKYEEIKATVIRHGETLRRTKEEINELNRLIQRLTAEIENAKSQNSKLEAAVTQAEQQGEAALNDARGKLAGLEKTLQKAKQDMACLLKEYQEVMSAKLGLDIEIATYRRLLEGEEQRLCEGISAVNVRVSSSRGGVVCGDLSATRTCGIGSYGVGACGSSCKKC", "length": 480 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MFB0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112441459", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELWRRLLIIVIGTLITGYMVTCTCLLHYSCDSEEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKSTWPPSLQCRVKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVTLFSRELKHFYKSYKKKQPIYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDMFKNSQNN", "length": 361 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MI36-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSSSGSKAEFIVGGKYKLVRKIRSGSFGDMYLAINITNGEEVAVKLESQKARHPQLLYESKLCKILQGEVGIPHIRWYGQQKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMMGRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASISAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRTLNHQYDYTSDWTMLKQKAAQQAASSSGQGQQAQTPTGF", "length": 325 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MQ28-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "KEQVLQPTTVVSLEGAVAEISCNHSVSDVYDFFWYLHFPGFAPRLLIKGLGPSQQGRYNMTYERFSSSLLILQVQTADAGVYYCALRYTEAGHP", "length": 94 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MT47-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112444909", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLGCEGGKRPLKPPKKQAKETDEEGKAFKHKQKEEQKTLEGLKGQIMGKVPLATGGIKESGKQ", "length": 63 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MUP8-1", "protein_name": "E3 ubiquitin-protein ligase", "gene_name": "LOC100336539", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRLTERALPTGTSNGAPSSRRAPVLTGTTVSNNDLASLFECPVCFEYVLPPITQCKSGHLVCGNCRPKLTRCPTCRVPLTSIRNLAMEKVANLVLFPCKYTSSGCGKTMPPTEKADHEEHCEFRPCRCPCPGTSCGWQGSMDAVVPHLMQHYNESIITLRGEVVVFLAVNINLAGTLEWVMLQSCFGFHFLLVLEKLEIYDGHQKFFAVVQLIGTREQAENFTYQLELNGNRRRLSWEATPLSIHEGIATALINSDCLIFDSEVAELFAENGNLSIDVTISMC", "length": 284 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q2TUK0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC121109925", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDEKGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2UEY0-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418381", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSSYTIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A494C0N9-1", "protein_name": "Protein FAM246B", "gene_name": "FAM246B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPGRPWAQARSAYRASEVLRRVTGRRRDPGPQSNGPGREDARAPGRLARLLRQLRAEAASRSEVPRLLKLVERAGAGAAGAGERTGAHSRGSVCSVCGEPRGRATYPAGVLEVSERRLQEGLAAVREELGAEIEALRAELRAELDALRALLPPPPPSPPARREPRAVPRAAPRGPTLLRTLGTVSALVAASRPADDAPDGPAECGAHRAPARKNHKKMPVPPGAPQGGGD", "length": 232 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A494C0Z2-1", "protein_name": "Speedy protein E13", "gene_name": "SPDYE13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1TRA8-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGVTVKDVNQQEVVRALAAFLRKSGKLKVPEWVDTVKLVKHKELAPYDENWFYTRAASTPRHLYLWGIAGVGSMTKTYRGHQRDRVMPSHFSRGSKSVAHRLLQAREGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH", "length": 145 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TY10-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100627324", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENYNQTSIYFILLGLFPSSRIGMFLFIIIVLIFLIALFGNFSMILLIFLDNNLHTPMYFLLSQLSLMDLTYISTIVPKMAYNFLFNDKSISFIGCGIQSFFFLTLAGAEGLLLAAMAYDRFVAICFPLHYHIRVSKRICVLMIIGSWIMGSINSFAHTAYALNIPYCQSRAINHFFCDVPAMLTLACIDTWVYESTVFVSTTIFLLVPFTCIAFSYGRILLVVHHMNSTEGKKKAYSTCSTHLTVITLYSAPFAYTYLRPKFLRTPTEDKVLAMLYTIFTPMLNPIIYSLRNKEVMGALRRVIQRICSVKM", "length": 312 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1U699-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSVSMSKFVLVGLHIWPEQQGMVFALFLGMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLAFSDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFFSCIDNLLLAVMAYDRYVAICHPLRYAIIMKEELCLCLLAGSWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLASLIKLSCSDTSLNELVIFSLGPAVFIFPLSGILVSYGCIVVSILSVHSPKGIFKALSTCGSHLSVVSLFYGTSMAVYLSSSSGQSHDKDTIASIMYTVVTPLLNPFIYSLRNRDMTLALQILFRNSNLLAK", "length": 315 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VK25-1", "protein_name": "Elongin-C", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RSYGGCEGPDASYGKLIASDKFIVKREHVLTSGAIKAMFSSPGQFAEKETDVVNFRETPSGIPSAALWKVCMYLPHKVCYTSNTSEIPEFPINSEFPIAPDIALEPLMAANLLDC", "length": 115 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A571BD55-1", "protein_name": "BTB domain containing 35, family member 26", "gene_name": "Btbd35f26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BF50-1", "protein_name": "WD repeat domain 88", "gene_name": "Wdr88", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTKDNEEILNSPDQVRKGSPDVKKKKKIKKKRVKPKGDLDSKKLDFVEDSWWKGSLKNKNLDFAEYNWVLVDNRRVSVDSRKSSADSKRGSADSKRGSADSKRGSADSKRGSADSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKNRFSPKKMDFSEDREISQPTFLRAQQSKVPWALMRALGLFKLSLPDIRRYYNLTSHDPLALDKDRQPREKSHMATVKKFWGNQQPLSKIPYKILIGHDHIVSSCHFCMNDTRFLSSSYDCSVKLWDAEDGTVIWDFEPRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRHDTFVVCCKFSPNGKFVLSALDVDRGIYLMDPENITTVIHMKDHHQRSITSCCFDPDSQKVASVSMDRCIKIWDITSRTTLFTIPKAHYNAISDCCFTSTGHFLCTSSWDKNIKIWNVHTGEFRNRGACVTLMKGHEGCVSSCCIARDSSFLISGGFDKTVAIWDVGGGYRKLALKGHEDWVTDVAISNNKKWILSASKDSSMRLWNIEEIDKIPLVSENKKAMGLKVRQVGIR", "length": 565 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG45-1", "protein_name": "BTB domain containing 35, family member 25", "gene_name": "Btbd35f25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGLQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG86-1", "protein_name": "BTB domain containing 35, family member 8", "gene_name": "Btbd35f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESRHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A5G2QG78-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100523228", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTRGENTTNITDFVLLGFSDFPQIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHTPMYFFLRNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECGLMTVMAYDRYAAICNPLLYSSTMSPSLCGRMVLGSYMAGLSASLSQVCAMLQLHFCGPNVIHHFFCDMPQLLVLSCSDTFFLQLLTLVLTVIFGILNALVIMMSYVYIVISVMKITSTKGWSKAFNTCASHLTAVTLFYTSIIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDAWKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QIN7-1", "protein_name": "ADAM metallopeptidase domain 7", "gene_name": "ADAM7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSNSHYLSALFSREFLASNYSETYYSTKGEEVTTHPQIMDHCFYQGSIIHEFDSAASISTCSGLRGFFRVNDQRYLIEPVKYSDEGEHLVFRYNPKVQHAANYSCTELNFTRTAVLKDNTKSMEDSKMESIEKEKHIELFIVADNNVYHRNPNSKVRNRVWGMVNFVNMIYKTLDIHVTLVGLETWTNGDKIEIDSNIETTLKRFSAWQEIILKKKKNFDHVVLLSGKWLYTSAQGTSYPGGMCLPYYSSSVVKDLLPDLNTIASRMAHQLGHSLGMKHDDYPCTCTLGKCVMDSGGSIPALKFSKCSRTQYQQYLKDFKPTCMFDIPFSDKLSDYPYCGNKKLDDGEECDCGPVQECTNPCCDARKCMLKPEFTCAEGECCESCQVKKAGSLCRPAKDECDFPETCTGHSPACPKDQFQVNGFPCKDAKGYCFMGNCPTRDDQCSELFDNEAKDSSDICYKMNKNGNKFGYCKNEEQTLIPCEEKDVKCGKIFCTGGKHASILGEEKVYHLKKPLTQNVTECKTFFLYHKSKDFGLVAPGTKCGEGKVCSNSECVTIEKAYNSTDCPSPCNENAVEDGDLGCQCEGVQASVDWEETLNVTNISILVVVLILVIIGVLSAVLLIRYQKCIKLKQVQRPPSEALGVENKGYTGDEQQTRTEPILPDIHPLHRRTAESLARLPTSFSSPHYITLKPASKEPRGTADPNPSAKVSLKLDIQNGCASLS", "length": 725 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QM02-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100623139", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTGGENTTNITAFVLLGFSDFPHIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHIPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYVVFSTMGLSECGLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVRVLTAVFTVIFGIINALVIMMSYVYIVISIMKITSAKGWSKAFNTCASHLTAVTLFYTSGIFVNLNSSSGGSSGLDRFAAVFYTLVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QUE5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524011", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSNVSKFLLLGLPIQQEQQGMFFALFLGVYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFASVTVPKMLMNMQAQDHSISYAGCVTQTYFFMFFACIDNLLLTVMAYDRYVAICHPLRYTIIMREELCICLLAGCWLLSCAYALTHTLLLAQLSFCVDNIIPNFFCDLAALLQLSCSDTSLNELVIYTSGAAVFIFPPSGILVSYGRIGISILRVPSTKGICKALSTCGSHLSVVSLFYGTIMALYFSPSFGQSHYKGIIASVMYTVVTPMLNPFIYSLRNRDMTLALEILIRNKNLFTT", "length": 313 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QWK6-1", "protein_name": "Calmodulin 3", "gene_name": "CALM3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VSAEREEEGVALKFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R7Y6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524140", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLVAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINHLSGTKSISFVGCATQYFLFLSLGGAECLLLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIVLISASYVFILHSVIHMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2RGH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524855", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGRRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYTVLMNRKVGQMMAVTSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYETAVYISDIVLLLLPIILISASYIFILHSVIRMHSAGSKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALRRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A668KLA6-1", "protein_name": "Predicted gene, 52955", "gene_name": "Gm52955", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMGALLANSPLLLCWLVFGAQLSVGEGILLTLTLMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKQCGVFFFALNLALFGIFAFAQCFNPLVYGLHNRDLQSKLYPSLCCQKKLLP", "length": 296 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KLA7-1", "protein_name": "Predicted gene 7582", "gene_name": "Gm7582", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMWALLANSPLLLCWLVFGAQLSVGEGILLTLTFMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKRCGVFFFALNLALFGIFAFAQCFNPLFYGLHNRDVQSKLYPFLCCRKKLLP", "length": 296 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KM50-1", "protein_name": "RIKEN cDNA A930007A09 gene", "gene_name": "A930007A09Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSLSELPQKNTDLAEMQSGPLGRCSHFFWLGVAFDAVGVAVLFTGVFANLLFYDMLLYLGSIIIFVSLLWWISWYTGNIEALPEDPLRGTSPRESGVHRSGSRRFSLTLRSVSDTFQRIRRRRRRRLHPRVVQRISSISSTDPGQLERNCDARTSGGRALFRSAKPEAVLNQFSRVQTSKSLPLGIVHTGLSICTSRSQPVFSVTSQTYPLASDSNSQMAMSSDSHVYLDSHSQEHSKISVASQIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASQIYPLEQEESQSHFLVPMPSDSFPVVPMTSQSQIQGSLAQQSHLQNLPLASQTPETDKASKSHTLAKGVPGVPPGSAQTQHPQASLAQTSQISSPVRKVPKN", "length": 636 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8C2LDI6-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "LOC100774916", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRLWCKAIFAGYKRGLCKQRGHTALLKIEGVYARAETEFYLGKRYAYVYKEKNNTVTLRCKPNKARVIWGKVTKAHGNSGMVHAKFRSNLPAKVIGHRIRVVLYPSRI", "length": 110 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LMV8-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC100755948", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTNTEGKRRGTRYMFSRPFRKSEVVPLAMYMRIYKKGDIVDIKGMDTVQKGMPHKCYHGKTGRVYNVTKHAVGIIVNKQVKGKILAKRINVQMKHIKHSKSRDSFLKQVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPQLLEPISYEFMA", "length": 160 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LSR6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "LOC100751955", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSQDEGEKENPMWELHICKLCLSICVEESRDRLTRAAKVLEQLKGETPVFSKARYTMRSFGIRSNEKIAVQCTVHGTKTEEILEKGLKVQEYELWRNNFTDTGNFGFEIQEHIDLAIKYDPSIRIHGLDFYVVLGRPGFTIADKHRTGCIGAKHRISKEEAMRWFQHKYDGIILPGK", "length": 177 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LUM6-1", "protein_name": "Tubulin alpha-1C chain-like", "gene_name": "LOC100757824", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETDTGKHIPRVVFVDLEPTAIDEVRTGTYRQLFHPEQLITGNEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSRFTSLLMEWLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYPTPLPE", "length": 288 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LZU4-1", "protein_name": "Glia maturation factor", "gene_name": "Gmfg", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSDSLAVCEVDPELKEKLRKFRFRKETDNAAIIMKVDKARQMVVLEEEIQNVSPEELRLELPERQPRFVIYSYKYLHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRATDDLTEAWLQEKLAFFG", "length": 142 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2M625-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "LOC100755487", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIQTFREHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSGGLLVSSGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALSHEDETIVVGMTNGILSVKHRKSEAKKESLSRRRRPAYRTFVKGKIYMKQRDDIMINRPAKKHLEWYDKDLKSFRISKALDRVLEPNCVIKTPEVTVSIIKELNRRGVLANALAGRDEKEITRVLNFLIRNLSQPRFAPVLINAAEIVIDIYLPVIGQSPVVDKKFIVLQGLVEKEIDYQRELLETLGMMDMLFATMSRNDSVSLSENVPAELPEKTESPCQPGDTDKNS", "length": 527 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2MXE3-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "Gpam", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDESSVTLGTIDVSYLPNSSEYSLGRCKHATEDWGDCGFKTTFFRSATLKWKESLMSRKRPFVGRCCYSCTPQSWERFFNPSIPSLGLRNVIYINETHTRHRGWLARRLSYILFVQERDVHKGMFATSVTENVLNSSRVQEAIAEVAAEMNPDGSAQQQSKAIQKVKKKARKILQEMVATVSPGMIRLTGWVLLKLFNSFFWNIQIHKGQLEMVKAATETNLPLLFLPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTLIHKLGGFFIRRRLDETPDGRKDVLYRALLHGHVVELLRQQQFLEIFLEGTRSRSGKTSCARAGLLSVVVDTLSSNTIPDILVIPVGISYDRIIEGHYNGEQLGKPKKNESLWSVARGVIRMLRKNYGYVRVDFAQPFSLKEYLESQSQKPTSAPLSLEQALLPAILPARPNDAAESEDTSSNEPRNTADEAFRRRLIANLGEHILFTASKSCAIMSTHIVACLLLYRHRQGIHLSTLVEDFFVMKEEVLARDFDLGFSGNSEDVVMHAIQLLGNCVTITHTSRKDEFFITPSTTVPSVFELNFYSNGVLHVFIMEAIIACSLYAVLNKRGSGASAGGPGSFISQEQLVRKAASLCYLLSNEGTISLPCQTFHQVCHETVGKFIQYGVLTVAEQDDQEDVSPGLAEQHWDKKLPEPLNWRSDEEDEDSDFGEEQRDCYLKVSQSKEHQQFITFLQRLLGPLLEAYSSAAIFVHNFSGPVPETEYLQKLHRYLITRTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKRKRVSVLELSGTFLPQCNRQKLLEYILSFVVL", "length": 827 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8D1BQI2-1", "protein_name": "Uncharacterized protein", "gene_name": "LCE5A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSCQQNQQQCQPPPKSLPKYSTPKFPGPCPPLVSSCCGSRSGHGRCYSSGGGGCCLSHHRRRRYHPCQPQSSNCCDSGGGQQSGGSGCSHSSGGSGCCSGGCC", "length": 103 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1VKI8-1", "protein_name": "Uncharacterized protein", "gene_name": "NCR3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARMLLLILIRVHSGSCALWVSQPPEICTQEGTPAFLPVPSTPARGDWPLALSHGTGTNWPQGRRVVVLGQGVRTGNGTPLVVERGPAQLATPTIFLLRAGFYAFGFLSVAIGSTIYYQGKCHRHMGTHCRSADGL", "length": 136 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5XVN6-1", "protein_name": "SPATA31 domain-containing protein", "gene_name": "LOC689526", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESFLLLMNSAIESWMNTSTMDIATDLSIAILCGVGLFFLLIPFLKDCPLSPASGNKTDIPKDVKRGRSNTRRKTDVEKGCRDGGKTVEETKTPSQPMKILTRQLLQDSTPQIFWNSSQKLDHLLLSQLFSSLTSLEDLILQKFNRRFWGTSSIFSESVVAMAHVLRNPSFPQQKSVRFSDPCVTDQAPSQAQGLRQQHRYHPRLHRQRKTSLVGMTWVPEKKILPISTPKQIHPCLKRRAYGVSCPTTEKGIQTSLPPECLSHKHGLYSKAVKGYVKRNHQKAIGKPPGNWLRDTLKTKAIRPASILSEHLRMFLHHKEPQTKDKATNVEKQQGTCIRSPPSKKLKQFQGRFPPNTDHYCKRRPQLSQPGQPSILNSKSYKLRKIIQSVLAGMTLMKDRADFSMQSQFSQAPQSSVCNAKRYKYSKRMGSVPRRVPLKKDTARYDMGKPIKKCLGAGTKNVPHSACSILGKRLRARNLALKKGQASVMNPTGNYCLHDSKAEMKLASNNTALPVQCRRTPYLQILEALNPIPPGVLASKLPRIVFPSSPICDFKEEYYSKAATVLKNLHHQDPGGTRVKSTSAASLESALSMCSAAKIQKTQRAPPPAASRGLSKAHTDLLKRHLSIQHSALYFEQGRIIQGTGKGSLQQNTNPQKAKHAPLKSFHEGDSRHHSWNGTMVGPGKRVPPAAAKQTKAVEVKKETPYAWSLGSNESHTGKDINISPRVFGSLGAKRSPGHLQTCTPQHSQDSTLRTQGHRNIILCSNKQPQPRPGRHDPECPSTVHPAKVNLSSEHSMSSFQNTCQKPKTAQGSCERADTKENRVLKDKIRINHLKDLCPHKERQGSIRPTAISQGGRLGRSRPCSLSSTQLKDTAKTRTSDKRQATSKSSWKSDIREVLKYGYVGSKDIIGQEDTSKKDQPPAVTERTEEDWTGEKAMCNMIAHLQYLTNFLFEIMEDTEWDPSKLQGCEVESLTFQLGSSSDSSEGDDDINQGTSTSTMSFGQTSPEMHNCSFTKTGIGDKTQSEIKAKTACDQHLNQVNRGMFSDQLPMPKEYDLSCRYRGIQHQQELGLPDQTFYQYKLRMTHCPHGGTKGHNYSFGYRKLGDQQQPDFTHKALDPHQSAKEDMGCVSCLSPKGSRPVKHRRTDCFSP", "length": 1151 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5XWP3-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "ENSRNOG00000063695", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRDMCHMTPYRLLCVLVALALSGCNVAQEVTQVQSTASRQEGEEVTLDCSYETSYVAYYLSWYKQHLSGDIIFLIHQISSSTAEERSGRYSLVFQKSLKSISLVISASQPEDSGKYFCALSDLTQC", "length": 127 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y4M0-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "LOC108350588", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQRRGGSSGAKFRISLGLQVGAVINRADSTGTKNVYIISVKEIKGRLDRLPAAGVGHMVMATVQKSRPQLRKKVHPAMVIRQQKSCGRKDGVSLYFEEDAEVIVNNKGKMKGSAITGPIAKEHADSWPRIASNAGSTA", "length": 140 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y5C9-1", "protein_name": "Ribosomal protein L32 like 2", "gene_name": "Rpl32l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALRPLMKPKIIQKRTKKFIRHQSDRYVKIKRNWRKPRGINNRVRRRFKGQILVPNIGYGNNKKTKHMLPSCFRKFLVHNVKELEVLLMCSKSYCAEIAHNVSSKNRKAILERAAQLAIRVTNPNDRLCSKENE", "length": 135 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y6V7-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "Pate4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNTEPLFDIVINCPIAPQFILKILLFPYPANTNLICNTCNRSENSECKNGTGQCTAPEGGSCSTISIYHGQRHVLSKQMCLGHCEEKPHYNGDFMIYVMCCSKNLCNSF", "length": 110 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y7P1-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "ENSRNOG00000069815", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEREKEQFCKLFLGGLSFETTGESLRNYYERWGKLTDCVVMRDPASKRSRGFGFVTFSSMARPHSIDGRVVEPKRAVAREESGDPGAHVTVKKLFVVGIKEDTEVHHFRDYFEEYGKIDTTEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSGQEMQKAQSSRSGRGGNFGFGNSRDGGGNFGPGQGSNFRRGSGGWESSDGYGSGRGFGDGYNGYGGGTGGGNFGGSPGYGEGRGGYGGGGPGYGNQDGSYRGGYDNYGGGNYGKGNYNDFGNHNQQPSNCGPMKSGNFGGSRNMGGPRDEHRSFPSWKGYNGVFGKQSPLTWIKTHSL", "length": 347 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZKP8-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)]", "gene_name": "Gpd1l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGATTLRVCIVGFWSWGSAIAKIIGTNVKNQQKFASTVKMWVSEEAVNGRKLTDIINHYHENVKYLPGHKLPENVVAVANLSEAVQDADLLVFTTPHQFIHKICNEITGRVPKKALGIIHMESIDEGPRGLMLISDIIREKIGMDVSVLMGANTAREVAAGEFCETTIGSKVIQNGILFKELLQTSNFCITVVDDADAVELCGALKHIVAMGTNFCNGLHCGNNSKAAVLRLGLVEMITFTRIFCKSQVSTTTFLESCGFANPITICYRGSDCKEAKTFPRIGKTMGNLQKEVLNGQTLQGLKTSALVYQFLKQKGLLAKFPLFVTVYRICYEGRPSTEILTCLQNHPAHM", "length": 351 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZL63-1", "protein_name": "Ankyrin repeat domain 13a", "gene_name": "Ankrd13a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSDQSRKAAAEGGSSPMVWSRPARAPPGGRADGRGPIVERTTGEGRAGDESRRARTVGFVRGDLGLPKGPAVPQNGGGRVSRRGGLVGRHGAGLGPFRKSGPPPRSVMERLAYFPVRGGSAGSSRFASCQRGRERAGRGVGAAERVPEPVPSPARDPGPPAPPAPDSEALVVRCARHLAARRSPPLALRPVGRAPETPSGGSRLVAGGRSGLGGDLLAMSSARDTSSRFPLHLLVWNNDYRQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSLIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITKIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGQDLTTECATVNNPTAITPDEYFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEERQSVEGTQAECAASDATNFEVDQSVFEIPESYHVQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPASNGGVSHAHSYEAQYERAIQESLLTNMEGRCPGGLSDSSRFDSDLRLAMELSAKELAEQELRLQEEEAELQQVLQLSLTEK", "length": 809 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZP24-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "ENSRNOG00000064315", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAVPEKEKKVAAVPGTLKKKKVPAVPETLKKKRRNFSELKVRRLRKKFALKTLRKARRKLICEKAKHYHKECRQMYLTEIRMARMARKAGNVYVSAEPTLAFVIRIRGISGVSPKVREVLQLLRLRQILNGTFVKLSKASVKMLRIVEPYIAWGYPNLKSVNELIYKRGYGKIRKKRIALTDNSLMARSLGKFGIICMEDLIHEIYTVGKHFKEANNFLWPLKLSSPRGGMKKKTTHFVEGGDAGNRETR", "length": 251 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZPV0-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "ENSRNOG00000066253", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIVQRIFRLSSVLPSAVSVHLRSNPGVTAVAFNKEPDPVQKLFVDKIREYKTKRQVSGGPVDTGPEYHQDLDREPFKLKQLYGKGEMDKFPTFKFEDPKFVVIDKPQS", "length": 108 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZRI3-1", "protein_name": "Natural killer cell cytotoxicity receptor 3 ligand 1", "gene_name": "Ncr3lg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQSCQRGPENAHMHPKGPCCSALCFLCSLGSSPHGSSLGPLRKCGRRSKPVQSSPEGSRVAEWPDGLLSLLLLLWSLLPSAGGLELEMAGTTQIVFLHEDVTIPCKILGSLHLDLSIVGVIWSLKKDGDESEVFKFYGDQLEAVRPGANVSLLGLEHGDASLYLPRFELWEAGEYQCKVVVTPEKKEGTTRLEVVAHPNMSLSEKPATARGGKEKLIICQLDGFYPEALDIKWMGSALKDSHFQEITEGVVTGPTVKNDDGTFSVTSSLALKPALEDHMYQCVVWHRSWLMPQSLNVTVFENTRDSTHGTVPPTAEVGPPVSEPRSVMIYVTIIGLCILLFSVIVCGLWKWKRLTTSNTGLCLRLDVRC", "length": 371 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZS91-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134482834", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTETEEELPTPTPKPSISEEGNFHSQYQVLGTSGQGGNGKVLLAHNRLTGTPVAVKVLRKDKQWFQPAMMEANIMRKINHPNIVSLIQVIEKETRIYLIMELVEGQELYQYIRESGHIEEDEARQIFEQILSAVSYCHGKGIVHRDLKLDNIMIDKNKKVKVIDFGLSTQFPPGKMLNHHCGTHSFGSSELLLGHRYDRPKNDMWIIGVVLYCMVVGKLTFDSVIIQDLQRQVVAGVYPAPCGVSKELEDLLSKLLRVNPNFRPTARKAMKHPWFKEHWNGLIVPYEELLPLTPDPAILDAMKSIGLQASVVKHTLKQRKYNEEMATYFFLQKQALQGDGCTAQAQQVSPVAAPFPSLDPAAAFRLEPKRSGSLPVLGTLRVSSSHGHVSHYGQNAHPKGGKRYTVAGRLRPLPMTPTQDHYHKCAVSVPCIQTTSIFSEKSSNKKIKEDNPLSHRAPLEDKPIPSRVRHRGFKGWTRNIANALIKLCCCMPRRKKPRLGQNRISPQK", "length": 509 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZT61-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134479845", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVAFFLGQGSYGSVKLAWHRRTQALVAIKTVEISKNTIRAILSEMTTLELLHHPNIISLFQILVTANQIHFILQYAPGGNLVQLISEEGPLPEEKAKKMFGQIVSAIRHCHSLDIVHRDIKPQNILIDGEGNVKLIDFGLAVKCRPGTLLSRHCGTRGFNAPELVLRQPYDGKSSDVWSLGVLLYFITTGYFPFRGNTIDEIEQKITTGTYTVPHHLSGQLENLIHQIFTVSPEMRPSIEEIENHPWIKKCELKIPPMSDPDYKIIEMLCGMGYNAKDILESLQKKRYDEPMGAYLSLKNHVSEGYDLASITPTKPGDPCPPPPPSPAHPSVFGLPLRRRASEPNFGLLHRQPSREQNPLDLILSGLNMGRCVSMPPIAVYYPKKQRSTSTRALHSRPVASPCVYNNMLGVEIILPHKQDIEMNTSSPPQTMGWFKRLRKGIGDCFSRLCCFPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZXB5-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb2l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLSSLPGRNLAMARLLLLLLSAACLHTGNSAGYQEKNDFGVDQPDVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKHYHGEFIYTSTRPFIHEHFKGRLIMNWTPGQTSGVLRILNLKENDQATYFSSVFLQTPEGMKLWQSIPGTKLIIHALDTTMRSPSIIPSVVPTDDLEYTQGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZY57-1", "protein_name": "40S ribosomal protein S26", "gene_name": "LOC134478821", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGPRRPRQEAGSKPRELQQRVLASVKRRCLFSSLGSNTTKKKRNNGRAKKGHGHVQPIRCTNCARCVPKDKAIKMFVIRNILEAAAVRGISEANVFDAYVPPKLYLKLHYCVSCAIHSKVVGNRSCEARKDQTPPPRFRPSGAAPQPPPKPM", "length": 154 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYE5-1", "protein_name": "Oligosaccharyltransferase complex subunit", "gene_name": "Ostcl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METKHSALLRTFPFLVLECPNLKLKKPPWVHMLLAMTMYALVVVSYFFITGGIIYDVSIEPPSVDSMTDEHGHQRPVAFLARRVNGQYIMEGLASSFLFTMGGLGFIILDRSNTPNIPKLSGFLLLFDFVCVLLSFFIARVFMRMKLPDCLMG", "length": 153 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYN2-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "AABR07051831.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAECCVLVCPRPMCIPPPYADLGKAARDIFNKGFGLGLVKLDVKTMSCSGGEFSISGSSNTDTGKVSGTLETKYKWCGYALTFTEKWNTNNTLGTEIAIENQICQGLKLTFDTMFSPNTGKKSGKIKSAYKRECINLGYDVDFDFDFGWLAGYQMTFDSAKSKLTRNNFAVCYRTGDFQLHTNVNNGTEFGGSIYQKVLCEDFDTSVNLAWTSGTNCTRFDIIAKYQLDPTASISAKVNNSSLIGVGYAQTLRPGVKLTPSALVYGKSFNAGGHKLGLDLELEV", "length": 284 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYX3-1", "protein_name": "Methyl-CpG binding domain protein 3 like 3", "gene_name": "Mbd3l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LGELGNAGRLTGSMIPSRLQKRRKIQVAKSKRKAKHKSGTTLRNPLRLTSCIFPQPVTVITSYPENKTRYRRDEAKLKKPQQLCALERLKNFQFGGDSKENLSCPLELANAVERIARGMQDEASNQSGDKDQLTSGQVTSDQPPYLETNEHVALQLSPSFSSQGVTLPVPLHLSPSYFLRKVTTGDIQRQAWKVKKARKRLAEALEADRLARQTENMRE", "length": 219 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZU9-1", "protein_name": "Keratin-associated protein", "gene_name": "ENSRNOG00000070302", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "SPSTCELSSSLHSDCQETCIEPSICQRSCVASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSLKSFGGFTGSLGYGNSGFGSFGFGSCGIRSQGFGCNFHRPGYFSSKSVQSSYYQPGYTSGFC", "length": 127 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZY5-1", "protein_name": "Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein", "gene_name": "ENSRNOG00000064452", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKIKAVTEESEAQGEGCSQQHRYQELLVYLNPIAQHPGFPPPDLRKIEKGKKKKKRRPTKQKQIRHGVKEVQKFVNKGKKGIMVLTGDTLRGTAIFQLCARTRICPTSIFPLTDLGAAMGSKHPTCVIMVKLHEEYHEAYDKCLEEVQTLATPL", "length": 155 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A2Z7-1", "protein_name": "Developmental pluripotency associated 1, pseudogene 1", "gene_name": "Dppa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMPPQVLISGLLLLLPAAWTTTVTSSDQLWNNHTEVVPTQSPLKISTKDLYIGTSVSAALLILLAGVLAVLKYRHRRKKILESAVVFHGFQNGVFQSTEQSQAVDVYVIEDSKVPVAH", "length": 118 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3D9-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "Snrpd3l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQVYICDTKIRFPILPNMLKNAPVLENLKNKNQGSRAGQGKAAILKAQVAARGRGHEMGPWKLPEAKTVFSIKENFPSCLLLGF", "length": 142 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3N0-1", "protein_name": "Uncharacterized protein", "gene_name": "Pramef20-ps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQTPPTLEKLAIQSLIRNEDVAMSSLGELPAVLFPALFKEAFTGKHINLVKEVVAAWPFPCLLVGALMKTPNLETLQAVLDGVDMQLTRKFHTRRTKLQVLDLRNMHHYFWNIQAGEEDSSCSAENSKEKKVVKVFHRYALRKRVKVIVELYIHSCLKEEQTCLLKWAQQRKGSLHFCCTKMKVWNLSLCGIGEILKVFDPQHITELELHTEWTLLELAHFAPYFGQMRNLQKAFLAPLHRIMFSNSNGKRDREAKCIKKFISQFSKFNCLQHLHMFCVHFLRDHMNQVLGCLMTPLTLSITYYLISQKDLDSLSRSQSLFQLKHLDLRGVVLCDLDIMPLRGLLEKVADTLETLDLQWCKMTDSQLYALLPALRHCCQLTMVNFYSNNFSVPILKDLMQHIANWSRIRVQQYPAPLECYDDLAQVSVKRFAKLSSELMYTLGVIRQTKNISFATDICHTCGQRCVYHNGSRLCCCWH", "length": 480 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3R7-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "LOC120093241", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAARKALTVVAVLGSGAGVGSILFALVTPGELQKQLMLQEMPERDSRRRDAAVRTKELVMATLKDAAATKENVAWRRNWTVRGDGRSA", "length": 89 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3T5-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "Mrpl58", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EHGGRLGPTLEPEPSWNLVAPAARALCSPDSAQTGERHRVQEHLQPGQAVPRIQGRGYRLEGPGEPRKAGRKGRFLLLLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAKASQVPKEPSKEDAQLQRLRIEKMNRERLRQKRINSTIKTSRRMTMD", "length": 211 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A478-1", "protein_name": "T-cell activation Rho GTPase-activating protein", "gene_name": "LOC134485907", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDVELVRANQTCTCKTIFFYWATGNALATFRSKEQKVQWYTFLTRSINEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHNIEDYQLWFSPGHKETPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERPRKSCMTSCFHGGSVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTNSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAAASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQSEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKTLFGRDLSKKLSIIKFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKSNTKKLEMSSAVPHEGGPTAGHNGTTSKYNVPQEKILHD", "length": 834 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A4C1-1", "protein_name": "RRM domain-containing protein", "gene_name": "ENSRNOG00000063783", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LTCCAINSDPHPDSGLKMEGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLIDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGRGGNFDGRGGYGGGGGGSRGSYVGGDGGYNGFGGDSGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDSYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGRMKRGRFGGRSSGSPYGGGYGSGGGSGGYGSRKF", "length": 350 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5E5-1", "protein_name": "Paired immunoglobulin-like type 2 receptor alpha", "gene_name": "Pilrb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQILLLLLSATCLHTGNSGGYTRKNYFGVNQPAVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLILNWTQGQTFGVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHGVICSLLISPQLSYDHEDPLHHHLCRPHSWPGEHKGPKESFTAEPGGHHWDGRGQSCSHHPPLRMDDLSVVEAKASRVTPKPQPE", "length": 230 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5T5-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "Rpl21l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRGTRYMFSRPFRNHGVIPLATYIRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRAYNVTQHAVGIIVNKQVKGKIPAKRINVRIEHTKHSKSRDGFLKRVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPELLERSPYEFMA", "length": 160 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A8T3-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RMNCSQAPGFILLGLSRDPEKWQLFFSVFLVLYLLGLSGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKILQTLWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCGVLVSGSWGVAHCVSLTHTLLLSQLYFHTNQMIPHFFCDFGPLLLLSCSDAHLNEGLMMALAGVFGISALLCIVSSYSCIFYAVARVPSAQGKRKALATCSSHLSVVLLFYSTVFTTYLKPPSSSYSSGEVVAAVMYTLVTPTLNPFIYSLRNKDVKSSLRRILNMVKSPD", "length": 310 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A969-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000067430", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFFLFWTFPGLELDKLALLSFESSSSIHPRACASTPAFQRSHNPGDAAQQEAKQREAEMRNSILTRVLDQSAWVRLSDLALVKPDKTKAVEHRVQMARYGQLSGTVSEQGFIETPEKVSQQTEEKATVKFNRREVTDSDEDDDY", "length": 144 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A9H4-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "Art3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQATARGVIKRKAFPGRQLSLSTTSCPGGKITPAESGNRFESGHHLNVLQRHKRQKRKMKMGHFELVTTLLAAMVLMDVFQVQAEVLDMAENVFDDEYLKCNSRMEMKYIPRMHGEELANDELLQSVWDKAGIQWEAQKAQLSLPKNFKDAYGIALTAYVTEAQDQSPFYHTFNRAVKIAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEESYKNVVYSTSPNISFAFGEQNQARLGNFTLAYSAKPQTANEQRLLTIQTCFGVAVGKLLNKESEGIVLIPLSEVFQVSRKGTDDDLILHSINSTCSYYECSFLGGLKAGSCTTNPENPDPGYLNNPDLDSQKLEDSGRKSLDSVKMPEIKVLQGEENPLLPDEKPEDRNRGKANVPTPGLVPVPGPKSHPSSSSGHRLLPSDTASTILLIAAAVDFIAL", "length": 433 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AA84-1", "protein_name": "Ankyrin repeat domain 10", "gene_name": "Ankrd10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAGAGAGVEAGFSSEELLSLRFPLHRACRDGDLVALCSLLPHTPRAHLAAEDSFYGWTPVHWAAHFGKVGAGTLRRHFPRGVLLGSERTPPCLESAATARSAPPAPPEGSRAHVQQSGLGVKGWGRGGAEAALAPPGVQGACAAARSPGPRGARGVMGGGAEMGSVWPAPRRTQGACAHLWLFRAGRADRMQLRRFARRPSGFGEWCGRLLLEARREPGASRSCLMETGRRAPLRHKGMDAALAAGGVRSAPAVVDGGLAARPTGPLSQLGPPCLECLIQLVRAGASLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVGNGAQTDLRNASGLTAADIAQTQGFQECTQFLLSLQNHQMSRFCPNGTLSGGHENILPNHINLGTNRKRCLEDSESLGVKKARTRVPSLDHTMPLANGDAEDDADRMHVDREFAAVSDMKNSSSVLNTLTNGSVINGHLDFPCVAQLNGMESRSDPCLTGSNGISNGQPFPSGQGPVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDIGESLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGAMQLHHGS", "length": 621 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ABF4-1", "protein_name": "Nuclear transport factor 2", "gene_name": "AABR07018058.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDKPIWEQIGSSFIQNYYPLFDNDRTQLGAIYIGASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIMAQQYQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNSS", "length": 127 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC04-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLSQNKTLKSIEEVALHVILLCQVGVGTVANFLLFIHNFSVILTNCQLTPIQVIVTNLAVASAFNLLLLAFPNNVTLFVPRKAPSDLSCKLWYFICLVARSTNLSSTCVLSTYQFVMLLPGNWSRVILKGRAPKIVNYSCYGCWIFSVLNNAYIPVKVSGPQKTQNDTDFKDKWVCSTSGFSVGMSFLRFAHDALFISIMIWTNVSMVILLNRHHHRLQHIHSSNQDHRAYADTRAAHTILMLVVTFLSFYLLDCICTFFHISFVDSRLLLRRIKEVLTASFPTISPFLLIFRGPKNPCSLLSRS", "length": 307 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC51-1", "protein_name": "Non-histone chromosomal protein HMG-17", "gene_name": "Hmgn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKADGAGDAK", "length": 90 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC66-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "Eif6-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVRASFENNCEVSCFARLTNTYSLVAIGGSENFYSVFEGELSDTIPVVHASIASCRIIGRGTSVWGTGMGYWYPTTTTDQELQHIHDSLLDSVQIRRVEEGLSALDNVTTCNDYVALVHPDLDRETEEILAGVLKVEVLTVADQVLVGSYCVFSNQGGLVYPKTSIEDQDELSSPLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDRLT", "length": 245 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ACC5-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000069094", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LPLLAFEKYVVCDGELQRLQVSCEVLGDVDPPQRLSASVVQMKQSVVEFLGTLVEQDAQGAAEDMDNALVGDNEEAEGENNSTRTNSDGPFTERPNQRLNNR", "length": 102 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AEL7-1", "protein_name": "Protein phosphatase 4 regulatory subunit 3C like 1", "gene_name": "Ppp4r3cl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDKLYRVKVYVMMEDKQWKDIGAGQISSKYIDRLQGVCLLVHSESDGSPILECKIQPNVPYQKHQGKVIIWSEAKNHGTAIHFQEPNDCQETWEVICQVQGKDPNVEITQLLTDDLESFKDMLLSWNKVEMSSCELHTLENIADLLSFVNEAPSHKKILTLVLEKEGYIKKLLQLFKTCEKHQNIDGLHYLNNIIRGILFLDNIHLFNIMFSDEFIMDVVGCLEYGPGLDEPKQHRQFLTQNVKFKNVMQITHSQLRKKIQQTYRMQYIYDIVLPTPSIFEVNLLHDLSTMIFFNKIEIITMLQEDEHFLLEVLAQLKDNTVSNERRHELLLFFKEFCAFAKTLHFQKKNTLLKTLIKLGIISALKVVVHMHDYQIQVAALELFAHLVEYSPRLIRAYAMKEAQYSEDNDGLLINIMIKQMTCDSDPEFSRSIILTTVLHAILDPENMRVTTKGHERRKFLNYFYRHCMNKLIEPILSITVENNSDDNRVNICPDNYQNAQLLGAILEILTFCVQYHSKYVKNYIISKNLLSRILILMSSKHTFLILCAVRFMRKMIGLKDKMYNLYIVEKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRQENIKSLIANIVEKFFMFFESIQYVQTFKGLKTKYEEEKKKKRERQLRKSLHNIIYQRIYCRHIKAMEVKVKADIFCRQITDKEEEREKGGGGGEGGGGRGGEGEGGREGGGREGEGGGGGKGGRGEGGAVLSMGSDIPSHYDMFVKINEMNERENVIECRKRKSSATSEYSTSCGDTSDNGISTVYCSSLVPLVDYAYDTDGEDDDGSYGNNENEEEEEEEEEEEPPKKKPYFHP", "length": 840 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AFG0-1", "protein_name": "Cytochrome b5", "gene_name": "ENSRNOG00000064959", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAKEKGKFEDMAKDVKCYTLGEIQKHQDIKNSWAMLHHRVYDLTKFLEEHLGEEEVLRERAGGHASENFEDVGCSTNVQGLSKVHIIGLFHPALITTIKLNSNWWDQLCSPTSQVVVAHTFNPSTREVGAVGFP", "length": 135 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGM4-1", "protein_name": "Proline rich 18", "gene_name": "Prr18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRLLGRVMSFSPMPPPPPPPPPPARTQGGPAARQLSRRPCGPPAASPPAPAAAAAGEKKRRPPEMLLSSSWPSATLKRPPARRGPGLGPGTPQPPTSARVPPQPSPGRGGTSATCSAPRRIACSHIPAGSTASGTSAGAGAGPEDATRFSLSLTPEAILVIQRRHLEKQLLARPRRPFPAPSADPRRPLVPCPRTRSSTLRRGGPTSVPDAPLAVAVSSRPPRASLLPGGLQATMPSPRPSSLRPVLKVSLLNEKHKYDDEEYEEEVEVVDEGLVRKCTEWLRGVESAAAARGRTGHLDSLPHLSTL", "length": 308 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGS9-1", "protein_name": "Olfactory receptor", "gene_name": "Or5aq7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVWNSTGVKEFILIGLTENPNWQVPLFLLFCIIYFIILVGNCGMIFLIWLNVQLHTPMYFFLSNLSFCDICYSTIIAPKMIINFLSEHKSTRLFACILQSFFFAVYATTEVVLLSMMAYDRYVAIANPLMYTVIMTQSICTQMILASYLTGLINSLIHTIGLLKLNFCGPNIVNHFFCDVPPLLKLACSDSHINEILLLVFSGIIAISTLIIVIVSYIHIIIAILRIRSAMGRGKAFSTCASHLTAVALFYGSLTFSYIQPSSQYSMEQEKVSAVFYTLVIPMLNPLIYSLRNKDVKEAAQKLMLGKRNAC", "length": 312 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AIA3-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065493", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIFVPFFPHPGSIRKDGVVYAHTMENSSNSPRETREPAPLRRTWRGCFQRALPRVSKFFRRGRGSTGGWDNGSPRQGPMHSDQDLRHLRSLLSKESCPVMSK", "length": 102 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AK52-1", "protein_name": "Olfactory receptor", "gene_name": "Or9s14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIEVHRNGSLSAMSLQGFVLLGFRGGAETQALLFTVFLVLYVVTVLGNLTMIMVITLDARLHSPMYFFLKNLSFVDLCLSTVVVPNALASIFFSSKTISFAGCATQFFFFSLLAATEAVLLAVMAYDRFMAICSPLRYPVTMCPMTCVRLVLGTFCVACLNSIVQTSLTFRLPFCSSNRIDHFYCDVPPLLQLACASTALNELVMFGICGFIIVCAVFVVIISYVYITVTILRMHSGSGRHKLFSTCGSHMTAVSLFYGTGFAVYGQPGGVASMEQGKVVSIIYILIIPMLNPLIYSLRNKDVKDALRRLGQRHSLAKESG", "length": 322 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMC4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "ENSRNOG00000068014", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCVFKNAWGHRNMCSMALCSQFGTHLHVSLTDAHSLSCNLIIRSPTKAEPLRYEGHCSMDEIVFLSFNNVNKTMPLGNQEKMANATKVQKCLTQWIDLLGQDLRDKVSEIKVHTTKTSGHPTLRVTMLSKHRHGEIIGASWEFNISENYSFILDLKTMKWKPQDIMKEWKDDETLMKHLNLSIVECSQKFNEFLNQHEERTSRYYLDSALPPAPPPLFKGFTILLWHSYTPAISPTSSDTHSSFINFRDGLIDINFPL", "length": 258 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMN7-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "ENSRNOG00000070681", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPGYITLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLACAEKKAAGKGDVSTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVLYCIIKGKARLGRLVHRKTCTTVVFTQVNSEDKGALAKLVGAIRTNYNDRYNEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMX9-1", "protein_name": "Ribosomal biogenesis factor", "gene_name": "Rbis", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKNKLKGQKSRNVFHIASHKPLKAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELHHEKEPANVDEATRLMAQL", "length": 96 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ARJ3-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "Or8b101l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTLGNVSSVKEFILLGLTQQPELQLPLFFLFLGIYVVSVVGNLGLIVLIVLNPHLHTPMYYFLFNLSFTDLCYSTVITPRMLVGFVKQNIISHAECMTQLFSFCFFVIDECYILTAMAYDRYAAICKPLLYQVTMSHQICLLMTVGVYMMGFVGAMAHTGSMLSLTFCEGNIINHYMCDIPPLQKLSCTSTSINELVVFTVVGVNVIIPTLTLFVSYTLILSNILSIHSAEGRSKAFSTCGSYIIAVSIFFGAVLFMYFKPSSASVDGDKVSTIFYTILGPMLNPFIYSIRNKDVHVALRRTLKKRIFT", "length": 309 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ATM0-1", "protein_name": "ELAV-like protein", "gene_name": "Elavl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDAGAGSCRYKGLGAAAVRPRARSAQRGPVGGREGGREERTHYPAPDRPDRGPAAEGRAAEISVGKSDFCGPRGAALRAPSTARPLPPSTCRQGSGRRSAHPQARVSSRPSRAPPPPSSPLRRPQSQTPGRDPGVSTRRPPRSARPPEPPSIRTAPAGHTRMVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA", "length": 522 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AUS4-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "ENSRNOG00000062467", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTAAGKTLAVVAVLGAGAGVGSILFALVTPGELQKQSMLQEMPERDSRRRNEAVRTKELVIATLKDAAATKGNVAWRRTGQLEGQGRMCGTKGTNKCSLPIKWISQLDI", "length": 110 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AWY6-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065059", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKATKKSKNTTSDVEPSTSSAKSKKAKTCYQYQTRAGEKKSRWSGSDCSVNVQKTTKKAKRTLPRIAENNTSEKTVPPTKKTKRAKDEQLFGHYHRLMDEISTSTERGPEQSSTDSSSASTSDEESQ", "length": 128 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B5G4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "Ptp4a1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCKATHDTTLVEKESIHVLEWHFDDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAVRCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGAFNGQQRLPLEKYHPKMWLRFKDSNSHRNNCCIQ", "length": 173 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B646-1", "protein_name": "Ankyrin repeat domain 66", "gene_name": "Ankrd66", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSREARLHHQTPGDQEAGAACLLSWGGGGASFHGVNTLTLRPAMMACSTELLKDTDSVMELSKLSDMTKLHQAVAAGDYNSVKKILKKGLCDPNYKDVDWNDRTPLHWAAIRGQMEVIHLLIQYGARPCLVTDVGWTAAHFAAESGHLNVLKTLHALHAAIDAADFFGDTPKRIAQIYGQKDCVDFLDTAEPECRDHRQRGLLFDERDPDWDLKKRELELSLPVPDQNTNKKKKRIRGSTRVNHSKAWRI", "length": 251 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G1V0-1", "protein_name": "Ankyrin repeat domain 62 like", "gene_name": "Ankrd62l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRVAGLSSKKSRWLLQSLLDQQRHSLGTGFESANILLSPKYHLKDKDLRKIHKAARDGDAARVQQLLLGKHCVNDKDKKKRTALHIACAYGHPKVVMALVEGKCEVNATDSEECTSLVKAVQCQEEECATILLENNADPNIVDAQGNSALHYAVYYKNTSLAAKLLDHEVNIEATNKDGFTPFLLAVSENKLKIAKFLLMKNASIHAADNQKRTALMHAVSHDSTNLVRFVLEQGVDLFVKDAFGLTAIDYAADFKYNSNMEILLEYKAKRYEESERANLVEKSSEEDSSRRKDQQSQELENMEKEELTEPGNGTEEQEPDGGVTSVEEPRRLDDRGDDQPQEAVTAPRTREKEQELPFTDMCTVVTGKEDEDESSWDSESVSENLPLIRIGVDGLLLVNGQAVENPEKYLHWLHNRKGEESVPNETKGVGDLQAFTPAEPGLELTSEEKHEELSRNEDCQPQVEEERTQEWSGWGAPEALCAAALDHGDIGSPLTRENGHPRARQSPSVDSEEQDGGSGLNIKEEKTRDHEEWSGDFLMDRTSKESEPAAGDLLQVKDSWSLNDTDPNKGSPAKRKSKEKHKVRGEMNAMEDADDFTPLSESCSDNKAELCCNTHQAETETESCELLTRQTGNMEGGVAGEVLKTEPARSREALKETEETGEGARVKMQLPGKDELYSEDAERQQYDMALSALHLKTKQTVRQLQETQDRQREVVRSSQRMQDHLQKLQAGCSEAEAMVQEQGKKTAELQKLHAGMIHELKEKWETIASKYLPLNIQLKYLEQELLSIKIAQKQYEKLHEDQRTLQRDAVDLQHQVQENMAKLDDEKQAMALRDSNNDSLMSQVELRIKNLESNLQKLQAEKESNERNVEKYLQRYIRERELSKTLSHTLHRTNSKLSRVRTDILLVTERNRTVQNTLTTRPVPKSPGVTEHSAYVNRNPNFIASRNLEAAMSSPQPSPELMRRRLLKKQKNMVKNITEEVDKAAAELESWSLEAYPSGSK", "length": 1003 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G430-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "LOC689816", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLETCRNLSAIGYIWEDNSTEEYCKSSRRHGRPTSVTMKVNLCSFSGYKIYSGHERLYARTDGKFSSFLMPNVSPHSFPKGTLGKLTGLSSTEENTRKDSRKKFKRKEPTLQKFQRAITGASLADIMAKRNQKPEVRKAQQEQAIRDAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR", "length": 193 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G808-1", "protein_name": "Paired immunoglobulin-like type 2 receptor beta", "gene_name": "Pilrb2l7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARILLLLLSAACLHTGNSAGYPKKYDYGVDQPAVLSGVQSGSIEIPFSFYFPWELAKDPQMRIAWRWKVFHGEFIYNSTQPFIHEHFKGRLIMNWTQGQTSGVLRILNLKENDQATYFSRVFLRTTEGMKSWQSIPGTQLIIHALITTPGSPSIIPSAVPTTGLEDTRGQRTPSLLNLGAMVGMVVSKVVVIIPLYGWVIFLWWKQRTQFRRDLVSEHPWKNFVPILPAESSSFL", "length": 236 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GB91-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c117b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TNRYYFNIFMIIMQNQSFVTEFILLGLSQNPNVENILCVVFLFIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDACTSSTVTPKMIVDFFYERKTISFECCMTQLFAIHFFTGIEVIILSAMAYDRYVAICKPLHYSSIMTQRLCGILVIVSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYLCDLFPLLKLACTEPHIFVILVFSNSGSISIIIFSILLVSYGIILFSLRAHSSEGRRKALSTCGSHITVVLLFFVPCFLIYARPTSAFSSEKNAFVFATIITPLLNPMVYTFRNKEMKNAIRKMWKRLIMVSCNY", "length": 323 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GF85-1", "protein_name": "Ceramide-1-phosphate transfer protein", "gene_name": "ENSRNOG00000064148", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "HFFLEYLNNLKIMLIFLSPPTGGWASDHHSPTTGTHLRFLNSLGAAFSFISKEVVSKLQIMEHPRSSPQSEHCSSLQSMAAYEVSNKLLDLARRSGPLHSNSGCRTVLCLHRALHWLQLFLEGLRTSSEDARTSTLCTEAYSAMLCAYHSWIRQAVTVAFCALPSGKVFLEMLGEALPFMEQMCDISQFYVEHFLLDLP", "length": 199 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GFV7-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f21c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLTMYLATVLGNLLIILAISTDARLHTPMYFFIMILSFTDVCFSSTTVPKVLANYMLRSQTISFSGCLTHLYFLCVFADMDNFLLAVMAYDRFVAICHPLHYTTKMTNKFCVLLIVGSWVLTNLNALLHTLLMAQLSFCGDNIIPHFFCDATPLLKLSCSDTHLNDLMILTEGTMIVVTPFFCILISYIHITCAVLRVSSPRGGWKAFSTCVSHLAVVCLFYGTIISLYFNPSSSHFAGKDMAGAIMYTVVTPMLNPFIYSLRNRNMKGVLRKVLILRFPSKQ", "length": 313 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GGC1-1", "protein_name": "Histocompatibility 60b like 1", "gene_name": "H60bl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKGATSKCNHSLTLSLLVLLNSLGTMQVDGTDSLSCNFTVQYKVSLGQCSVNGMTVLCFDDVRQNSPVCKTEKKGNATKLCNDLNQCLSYSFYEMMKLESGLFESKGNHTLRVTVQSQYNQGEFMDGCWAFMIDRQYPFYFYPKNMTWRENQPNAIKTMSQWENNRELFQSLKFLSTGDFSLCLKKLLTDSRELTRSTIKAPDTTQPTSTTQSPSTGNSTPAMSSNQSPSTGNSTQPTSTTDYLIVFEFTAIFLALIVVSMEKKKVLPAAPLPLQYELQSPSPAVLEES", "length": 290 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GIM2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x11c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLFNVTEFIFLGLSPNKEVQRVCFVLFLLLYMAIVLGNLLMVVTVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLILDLLAEMKSISVWGCMTQLFFLHYFGGIEIFLLTVMAYDRYVAICKPLHYTSIMNRKVCIVLVGTAWTGGFVHSFAQIVLIFPLPFCGPNTIDHYFCDVLPLLKLACSDTFLIGLLIVANAGTLSVIIFVVLLASYVVILFHLRTLSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRRSDTLPVDKMIAVFYTVITPLLNPLIYSLRSAEVKKAMKNLWFRTMKADEK", "length": 309 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJN1-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1-ps20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LSQSPPRNRTEQLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNFGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYGGGGQYFANPRNQGGYGGSSSSSSYGSGRRF", "length": 319 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJR0-1", "protein_name": "Aspartate aminotransferase", "gene_name": "Got2-ps6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLHSRMATTFHPGLAAAASARASSWWTHVEMGPPDPILGVAEAFKRDTNSKKMNLGVCAYRDDNGKPYMIPSIRRQRPRLLEKIWTKNAYPSGDWLVFVRLLQRSEPVFCKDILSLAKMSFYPNHPGETTRPSSGMPACSYKVIDTMTHKTCGFDFSGALEDISRIPEQSVLLLHACAHNPMGVDPRPEKWKEMVSVVKKKSLFAFFDMAYQGFASGDGDKDAWAVQHFIEQGINVCLCQSYAKNMGLYGERVGSFTVVCKDEEEAKRVESQLKILIRPLYSSPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISKRTQLISNLKKEGLFHNWQHITDQIGMFFYMIKDGRISVAGVTSGNVCYLTHAIHQVTK", "length": 379 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GL73-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC134481331", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLVSLPEQNLAMARILLLFLSAACLHTGNSSGYRRVNDFGVNQPAVLSGVQSGSIEIPFSFYFPWELANDRSMSIAWIWKYFHGEVIYNSTQPFLHEHFKGRLIMNWTQGQTSGVLRILNLKENDQARYFSRVFLRTTEGMKSWQSIPGTQLIIHALNTTMGSPSIIPSAVPTAGLEDKRGQRNPSLLNLGVMVGMVLAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GLF3-1", "protein_name": "Heat shock protein 90 alpha family class B member 1, pseudogene 13", "gene_name": "Hsp90ab1-ps13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESQTDPSKLDSGKELKIDIIPNPQERMLTLVDTGIGMTKADLINNLGTIAKSEDQTEYLEERRVKEVVEKHLQFIGYPITLYLEKEREKEISADEAEEEKREKEEEDKEDEEKPKIEDVGSDEEDESSKDKKKKTKTIKEKSIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNAWEDHLAMTSLSGYVSRMKETQKPIYYISGESKEQVANSAFVERVWKRGFEVVNMTEPIDDYCVQQLKEFNGKSLVSVTKEGLELPEDEEEKKKMEESQTKFENLCKLMKEILDKKVEKVTIPSRLVSSPCCIVTSTCGWTANMERIMKARALRDNSTMEYVMAKKHLDINPDHPMVETLRQKAEADTNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNCIYCMIKLGLGIDEDEVTAEELSAAVREEIPPWRVMRMPLAWKKWIKGSWEAPALCIVSLGLPQQP", "length": 518 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GM54-1", "protein_name": "MAGE domain-containing protein", "gene_name": "Mageb11l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPHDQKSKLHSRENSYQAGGGAQAYGDAEEIAEAAAEAAEESSAKSQSQPGAEYSRNHRAPPKAKPSAKLILSSSSSESDESSHEESEPSVQKDRPFLHQDLIERRVAILLQYLLHNYNLKQLTTKEEMLKVITKKYEKDFPEILRKASEKLEDAFAVEVREVSSSQPSYDLISKLKLPNNGRIRAGKGLPKTGFLMSILGIIFIQGNSASEEDIWKILKKKRIYPGKKHRVFGEPRKLMTQYLVKLKYLEYRQVAHSDPPRYEFLWGPQAHAETSKMKVLEYLAKINKTTPHAISALYQEALKDEKERAEVRDEDNTDTTDQSTEGSPEKSPTASTTPVDT", "length": 342 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8J8YII4-1", "protein_name": "Coiled-coil domain containing 188", "gene_name": "Ccdc188", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGPEPLGPCGHSHTQHPPAPVSNNHGGCLNQPCQGFVRWPCLVPLQSTQSLESSRPFPAPGTGSGGPRMRGEAPGMFLSSEGEIPRQRAREPAGARQEEVEVEWDWPLHPGHEQGPPRQTAPPTSGPRPCPCPTLPPRGRATASSRQAPTQLQGGTLESAQQSFLQLEQENHSLKRQNQDLREQLGALLGPGQQFLPLCSEHSSCTALAWVSGNTRSRTHAAAPPAVHSLGPDPGALPQSPESARTRLLEDRAPVQLLRQQELCPGKESFVRQSQSELQQIRLSFERKKMAITEVWDGVAEVHMALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKQQQMMEAAGLEAAAGCSAGLHSGLRVRGGPHTLRGAGATPAEPSQRLEAQGLTGSLLTPGGGRLPAFLEQKPSGPSKEARWLVLPQGLRGLTGPCLQHCGTWPLPEAAEKGGGRASPEGWACSWIYSHDTLCM", "length": 481 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9PVG7-1", "protein_name": "5-hydroxytryptamine receptor 7", "gene_name": "htr7a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLGDTNRTIIAKSHGETMKSLMAEERARETGASVETFNGIMISEVLVPRLFKIAHESGEVAVAAGSGSMDMKPSSSPILLEMMEVANGTRCAEQILSYGEVEKVLIGGVLTMLTLITICGNMLVVISVCFVKKLRQPSNYLIVSLALADLSVALAVMPFVSITDLIGGRWIFGKFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGWCMAKMVLSVWLLSASITLPPLFGWAQNVNDDRVCLISQDFGYTIYSTAVAFYIPMTVMLVMYYRIFRAAKLSAAKHTITGFPRVEQEEVEEDEVEEDGGDGAEEPTGVDCVTVAIKLQREVEECARLPRILRGVGRRCSDRRSISIFKREQKAAATLGIVVGAFTICWLPFFLLSTARPFICGTECSCIPLWVERTLLWLGYANSLINPFIYAFFNRDLRTTYRSLLSCRYRNINRRLSAAGMHEALRLVERPEVVVSG", "length": 479 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QGZ8-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pimr118", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLFTVLGVIALFLRERDTNNTEEEVQNDVPPVRNSDGQEIDDWCKEPSLLEPVSVHSEEPSLEEPVSAHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLKEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPSLDLSFFSAESSWSEDLSSSFLTVESSWSDDLSSGFLTAESGCGDDEPLFVDSAEPEKLKEDKETQIIEINSHCYAIEAQLGEGGCGAVFSATRLEDGLQVAVKLSDFEEEKRFISVDGFEDPLPLEIALHFLANKGPKVKEIIELLDWKVEADRYFMVLEQPIPCMSLHEFLLDCEGIIPENKLRTIMYQTTVAAQTCCQRGVLHRDIKLENLLINPDTLEVKLIDFGCGDLLTEDSFQYFRGTREYFPPEFSSTGRYHGEPATVWSLGVVLFLLVFYRFPEQSDLPRMNNRRLRIKGLSRDCCDFFHGCLQLDPKDRLELQNLSSHKWIRTRTRRNDENCPNLTDGSSHSNHPITSN", "length": 567 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0WZU8-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6B2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMVVNLILGWWLVAVSRAQKLPRPSLSLHPSQGASLGDNVTLRCHLPQPAAWVRLYRYQNPTYIEQKDNVQDMAEFSLTSIKQEDAVIYQCQYQGLAPAGTSQKSDPMELLVTDHRYPPPGISLSPKEHVEMGSNITIQCWNKDYGASFLLHKGGHSAPIQHQEPDYWGTATFTLFGVTPADSGTYRCSYRIGGCCLLFSPLGDNVTLEVIPRPAPPGVNGGPSRNLVAAVAGGCAAAIVIITVSFLLVALRRQMQRAERPGATPRSPEAVQFQVSPGDSEGLTYAQLQAVTPSTHPPTSSTTPEPPIIYAEVGTRGPR", "length": 321 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEA0-1", "protein_name": "C-type lectin like 8, MHCY region", "gene_name": "YLEC8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 276 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XED4-1", "protein_name": "C-type lectin like 18, MHCY region", "gene_name": "YLEC50", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYLSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKAHPQ", "length": 276 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEJ6-1", "protein_name": "Sulfotransferase", "gene_name": "LOC769841", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVCRAAAPNSHPSTMPVHYVTYKGIKFPPAYNSVHSLSFAHNEFLVRDDDVFNITYPKSGTVWMTEILSLIRSHGHPSWNQTVLNSDRMPWFSTRLGLEAALSYPSPRLLTCHLPRHIFPKSFSHSTAKVIYTLRDPRDVVVSYFYFCKMCNSYEDPVSFEQFLRDFLSGELPHGSWFEHVRGWMQMKDRENFFFITYEELKQDLQGSVRRLCHFLGQNLDDDAISSVVQNASFMAMRQNPMCSSILLPADIMDQTKGQFLRKGICGDWKNHFTVAQTETFNRIYLEKMRGLNVAFPWDRDQDPDLTEQ", "length": 309 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGU1-1", "protein_name": "C-type lectin domain-containing protein", "gene_name": "YLEC62", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTGSDPQLPEEDVHISVLESNTSTPAMGEGDQQETFLEHKAVTEPLGQSGEKPQWGSRCHGTGRRRSRVQLIAVHAAVGALILMLVVLVISTVCRRASIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCNAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 277 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGW1-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "NHLRC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPAVLWRLQRLSAAERLEARLSGAVRKEPGRGEARQSEKKPHSPHCPLRCSYACPGRTPMTSESGRKALSHLGRQQQCLNKMAELRARLEAFPAPECLFKTLNPFMGFLRLFFAPQPLGGEQALFRAAQCAEASPRIPAPQAWAGRSRGCHGNAARPASMGRKQAVGPRLVMAGALLTLLGLLWGSQMLKAFDYFSSWKGDGEQQMYKLDISWPKIPEYFSGQTFCVAVDSLHGLVYVGQRGDDIPKVLVFSVEGYFLYSWNDTVEMPHGIFVLNTATDSSVWITDVGSGKYGHTVKQYSPSGKLLQVLGTPGNAGSSLNPLQFDQPAEIFVEESGEMYIVDGDGGMNNRLLKLSQDYKEIWLSGENGTGIGQFKIPHSVTVDPFGRVWVADRDNRRIQVFDKVTGEWLGAWSSCFLEDGPYSVRFTGNYKYLIVAHLNINRLAILAAPPVGEIGDCAIVSTIQLADETKPHLVDVDVKSGAIYIAEIGAQQVQRFVPLS", "length": 502 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPN1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR2A13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMAVALILGWWLVAASRAQQLPRPSLSLHPSQGVSLGDNVTLRCHLPRPAAWVWLYLEGRWSYAKYIDKKQDTTEFSFLSASHDQAGTYLCQYQVSESEDVSVTSDPVKLVLTDRSFPPPHISLHPEERVGTGTNVTICCWNKDYGATFLLHKDGRSDPIQRLVPDDVGAVSFTLFGVTPADSGTYRCSYHPKNYPFLSSPLGDSVTLEVTPTPAPPGAELVSRGNLVVAVVRGCAAALIFGLGVFFVIDARSLWIRRDESLGGEGI", "length": 269 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPP6-1", "protein_name": "SUN domain-containing protein", "gene_name": "LOC776146", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDETGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XQE0-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6A8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPMAVNLILGWWLVAGSRAQQLPRPSLSLHPSRGVSLGNLVTLRCHLPRLAAWVWLYRGGGWSYKKGKKKEQDAAEFSFASTLREHAGRYRCQYRVYESAEVSVESDPVELVLTDVRYPPSSISLQPEQHVGTGTSVTIHCWNKDYGATFFLHKDGSSDPLQRQDSSGGGTATFTLFGVTPADSGTYRCSYRHWRYAFMSSPLGDSVMLEVTPTPAPPGAELVSRGNLVVAVVRGCAAVLIFALGVFFVIDARSLWIGRDESLGGKGI", "length": 269 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XTD2-1", "protein_name": "Coiled-coil domain containing 97", "gene_name": "CCDC97", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEDPKEAEGPTASKWIPIASNGNPTASKWIPIASNGDPTAPKWVPISSNGDPNWVPISSNRDPMASKWIPVSSDRDPTVTKENPPSSNETPAAEWDPKVPPEGRPVEEGDPKASPTEDPPAEPDPKASNCAPLSSHWAPEAAVWDPTSPHRDPTAEPQCSASPEQHRAAQRDPASPMEEDRYPATHGVRPATRADPAPYGDHPEAEEDPLPAAVEAMLAAVAASPVRVRSQQQGDPELTAAERRRDLRALFLRKPLVFLERFHGALQAEHLPCFAHLPPRYEVAFYCRQVRARRQQNPQTGLSRWPRRPGARTRLRNRRYAALRQLIAGGEYFSEEEMRAREPLLYEHYIGQYRDAETPPGTPPCPPHPGTPPGTTWAAALLRSVEEAAVQQRLQRQRLREGDSGEEDEDEDEAEEPHIPDAGELEVLREEFRSRMYQRFLDGEDRDFDYSQVDENPDMDNLDIESRDAEERYFDEEEPSAAPQLE", "length": 487 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Y889-1", "protein_name": "Transmembrane protein 65", "gene_name": "TMEM65", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWLGRAVLLLGRPGGPAAPSSSSRLCSLRGPPRCCCRRRLSSLRGGADGLLPARGAPPGRALGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLRELHRFESIAIAQDPIAARASCQQYGETWAHQEPSGACSSVHSQAYHQKEAVPSSNCPSTKYDRTHYLWPPLMAEAAGKPGRCPHCCAEGWSSEKLEVAPPSPGQLRHVFFHNALPFVGFGFLDNAIMIAAGTQIELSIGVVLGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQADMWQTRLSAHLGKAIGVTVGCILGMFPLLFFGDEEEKLEEKN", "length": 328 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YA34-1", "protein_name": "SWIM-type domain-containing protein", "gene_name": "LOC100859602", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAERGQLPPYAKRLCCRPGYGSGCRLGQQAGDTGPGSGTFCAGPSSAAAAAAAAAAATAASLVLLPLGKTQSPESLLDIAARKVAEKWPFQRVEEQFERIPEPVQRRIVYWSFPRSEREICMYSSFDTGAEGFTAPGSAAGNTASGGAVDAVADENRLPFRRGMALLDGGCVDNVLQVGFHLSGTVTEPAMQSEPETVFNVAISFDRCKITSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVLPTAQKLADEILSQNSEISQVHGAPDPTAGASIDDENCWHLDEEQVQEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITDQFMADPRLLLWRQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKTSWLKQLKKWNCVDVCPWEDGNHGNELPNLTNALPQGANANQDSSNRPHRTVFTRAIEACDLHWQDSHLLHIISSDLYTNYCYHDDTESSLFDSHGWPLWHEHVPTACARVDALRSHGYSREALRLAIAIVNTLRRQQQKQLEMFQARKKELLYRGITSITNLEGWVGHPLDPIGTLFSSLMEACRVDDDNFHGFSDFMENTSQHKSLEYQHLPAHKFLEEGESYLMLAVEVALIGLGQQRIMPDGLYAQEKVCRNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEVIHRESVPMHTFAKYLFTSLLPHDAELAYKITLRAMRLLVLESTAPSGDMSHPHHIASIVPNRYPRWFNLSHIESQQCELASTMLSAAKGDVQRLETVLQSIQKNIHSSSHIFKLAQDAFKIATLTDSLPDITLLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATELGVHALDSIMQNWFTLFTPTEATSIVATTVMSNSTIVRLHLDCLQQEKLAGSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYSQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVGLQGRRNSVKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYGEFIEFLSKARETFLMSHDGQIQFTQFINNLKQIYKGKKKLMMLVRERFG", "length": 1168 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YDY5-1", "protein_name": "SKA complex subunit 1", "gene_name": "SKA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAEGLEALSRHLAAKIGLIKRLLQLRGLGRREMLAEVGMEVAVLHGLLGRMEEEVNQRRQLAAALQEMRKRAEKEKWEAERLQLVKKAAKEAPLVNDAPLISDEEFESVPGYMRGRLTLAQTNAALRALHAAAASKYRLLRHPPKSLPSSSRALCHRFREEETKETQGLTFVVEADLKEFTQLKVDRTFHRIVGVLRHCRRLREVRGARLVRYVLP", "length": 217 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z0M2-1", "protein_name": "Tumor necrosis factor ligand superfamily member 10", "gene_name": "TNFSF10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPAGGPSPAHTCGAVLVAAVLLQSVCVAVTYIYFTNELKQFANADLVHSCERGHPLSPPPPPDVPQTAVTRPTKAEGGAAPVGASCSIGQSRRAQSDLRQRAANAASPQHGPPCAARSRARCSCPRCTAGPRVCRRTQQKLWDTYSRSGTACLTGEELGDLIQNLDVVESKDRVADPCWQVKWHLGKLIKKMMSRILQENMSAINGDRTQALPRRDEPPQGPTLRIAAHLTGSSKRSSASPHIDYLSYRGIGHKIHSWESSRRGHSFLYNVELWNGELVVPQTGFYYIYSQTYFRFRENEDEDSGLLERIKNPKQLVQYIYKLTNYPDPILLMKSARTSCWSKKAEYGLYSIYQGGVFQLKREDRIFVSVSNSDIVDMDKEASFFGAFMIS", "length": 392 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZCD9-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418390", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMSALLFTLLHYWKIWFCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEREEQQEQVEEEEQLERVEELEQEDQVEHVEQEEQEEREDQGEQVQQEEQVEEVEQEDEEEEYFHHSALTRYIARRAWEKMQGKATKCVLVEELMSDLLQTYTFVCSNSFYPVLQPAIGVGSAFEGWSPCEEDIVYRLLVPIKAPHGHVFHPELGEEGEVLARNSRIRVELVCMCTREQQLGDVLCFLHHSEEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRTWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKVLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRVLRDFKELKDRLFRLLLFGR", "length": 542 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZD85-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418382", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAIFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZE07-1", "protein_name": "LIM domain only 1", "gene_name": "LIMO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRDSNPMGWYGSHPVTAAWEAEARTTSLGQPGVRAAELP", "length": 158 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZGC1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "LOC124416945", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVAGSPALLLLLSLGLCFTGAQGQGNTMAVSFLNRSMKHPKEGQRLGLECHTYKTSWGVSWIRLDKDGNLHFIVYISKFSSTTFPGNKGASSQFEVSKQGSSYRLTVKNFRAQDQGIYFCIANINQVLHFSSGQRAFFPVTTTTAAPTTLRAVTLTATTQSSQVTMKDISQHSPDPGRSKENMPNFCCKLVMWVNLACACLLLLTAITITTTHCQRPSSP", "length": 220 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZPB4-1", "protein_name": "trypsin", "gene_name": "LOC107049069", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKFLVLVAFVGVAVAFPIRDEDDDKIVGGYSCARSAAPYQVSLNSGCHFCGGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSGYNANTLNNDTMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGFGCAQKGYPGVYTKVCNYVSWIKTTMSSN", "length": 248 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A1Z3-1", "protein_name": "Bridging integrator 2", "gene_name": "BIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSLYHPNAIPVPFPSHPCTTLMSSLTHHIIPVPSSCLPNVIPIPYHPHVISTLSLLHPHFIPMAFLNLPHAIPVPPLIHSCAVPMSYHPFPISFSFPSPSHPSIAPMQSPSYPYPTPVPPPFHLLPIPIPTPVPPPCHSCSIPIQPRCRLHAILVPFPPHCHPHPVPAPSPPHPSAIPMPSHFHPHPIPVPPHTISIPSPPQCHLHAIPVPSPTHPHPIPSHPRFPHPLWAQGHPHPRGSNLSPPIPPPPPNTFALQNEGNKLYKDLKAFVGAVKVMHESSRKVAETLQEIYSTEWDGHVELKAIADSNDLLWDDYEAKLGDQALRLMENYLAQFGDIKERIAKRGRKLVDYDSARHHLEALQNAKKKDEAKIAKAEEEFNRAQAVFEELNRELREELPVLYGSRIACYVTIFQNISNLRDIFYKEMSKLNRDLYEVMGKLDKQHSSKVFIIKGVPSKRRSLLISAPVSPPAAYPCPGKAPNWDPSSGAEQTPTSPRVGSDATEDVPNGLAAPGPAEPGAPMPGPPPASPTSVRSASESESECSEESREIDLSPKEMEVSVGSGCPEYPKTEGAAKGEVEGIAASMASMIVSEAIAAATGAAPGDSDGVGGGDSTDSEISPAEGAWGGPSPGGSEERVEGTDVSPEVGSDAGPCEHGTPEPPQQDVSCDPPQDPSESLTPL", "length": 682 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A7J1-1", "protein_name": "Mitochondrial transcription termination factor 4", "gene_name": "MTERF4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGRLLGLLRARAPRAVLPAPGPASRHRCGTAGPEEGEAAELLAMGFSQAQARRLRLLRPGLEPQRRAEAAAQLLLLGLSAEAALGLLERSPGLLRMETARLKERAEYLRRLGLEGERGGPLPRGVHAAPAEDGGGGAAAAGAVSVHGRAADRAAAELPRGAAGGAGPRAAPLPGAGRRAGRSGGVAGAARPALSSARLHAQYAYFRMGVRQKEMVKARLFRTPFAELRNRHVFLERRGLYRTPHKGQSQSGNPALRDVLRPTEGDFVAGVARASPDEYEVFKRLLAREEEEMEEEEEEDEEEEEEEEGSAALHAEGGDRDWHSSEPSPIAPCPPAPQ", "length": 338 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AKD9-1", "protein_name": "Borealin", "gene_name": "LOC121107214", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPARRKAAAGARGRKLSAFLKDFDREVRSRVEQLRTNGERLVKEMENLYDVELLRLPAALREMNWLEFFAKGGSQKVVEEAVTADLGITEINKLTAELIQTPLKIVTKEKSKQGIEATEEAAEVPLLPPAKKAKHDSQLLLEQAAASTNPRNGKVRTSTKKAPVSRSRRAPSARVKRVSKRSSKSSFITPATGRNLDLCARGGASIVTPRFDSRVFKTPGLRTPAVNERVYTISANGSPLADGNDVFITVPVGGGESIRLTASDLTKKNLLHLNPEARGIMKKLSVRLAQACSSAKTHR", "length": 300 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AMC7-1", "protein_name": "ODF3A protein", "gene_name": "LOC121107218", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPVTKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8W4F7J1-1", "protein_name": "40S ribosomal protein S26", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQPIHCTNCARCMPKDKAIEKFIIRNIVEAAAVGVISEVSVFAAYVLPKLYAKRHYCESCAIHSKVIRNRSREAQKVRTPPPRFRPTGAALRPPPKCM", "length": 98 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F8K9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTVTTFILLGLTDEPQLKTLVFIFLFLTYMLSVTGNIISLTSTDSHLKTAMYFFLQNFSFLEIAFTSACIPKYLYNIATGDKTITYNSCATQLFFTDLFAVTEFFLLATMSYDRYVAICKPLHYVTIVNHTVCRRLIFGSWLAGLLIIIPPLSLGLKLEFCDSNVIDHFVCDAAPLLKISCSETWLIEQMVIVCAVLTFIMTLMCVVLSYVHILKTILQFPSAQQRKKAFSTCSSHMIMVSISYGSCIFIYVKPSPKDSLAVNKGVTILTTSIAPMLNPFIYTLRNKQVKQAFNDAIKRIALFSKN", "length": 309 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9E2-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RLEFSSLSPAEVPLVAAAGGRGAFDMRCHECDTKNTFACDHIVTCPRGIRRCLTLSIRLSSREIYVYKGCTRNCTFIYADEQPPPGERKPPRSNSLYFVQCCNAITCNRGGPINLEKDITPPLILEEELGGTVRLGEATLFLSVASVLVSHALT", "length": 154 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBC5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLTHSFSFFSSSSSSSTYSSSYPLLPLLLQPQNQFRIWALKDYGQRNSTSLHDFILLGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSTAGQRKAINTCGSHLTVVSIFYGAIIYLYLQPGNSASKDQGKFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 331 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBS2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258626", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTAITTFILLGLTEDPQLQLLLFLFLFLTYILSVAGNLTIITLTLLDPHLKTPMYFFLQNFSLLEISFTTACIPRFLYSISTGDRTITYNTCFTQLFLTDLFVITEFFLLATMAYDRYVAICKPLHYMTIMSNKLCKTMVVCCWLAALLIILPPFSLCFHLEFCDSNLIDHFACDASPLLKISCSDTWLIEQMVIACAVLTFIITLVGVVLSYIYIIRTILKFPSAQQRKKAFSTCSSHMIVVSITYGSCIFIYINPSAKEEVNLNKSVSLLISPISPVLNPFIYTLRNKQVKQALHDSLKKTAFLLRK", "length": 312 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FCJ2-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSRKRNLPQCNPPKKQALSRSSRAELQFPVSRVDRYLREGRYAQRLSSHTPVFLAGVLEYLTANILELAAGEAHSSRKMRIAPEHVQRARSHNETLSSLFQASSVSRGAEEEAEEPLPEAGR", "length": 122 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FD42-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFIILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLNCCITQLFFIHSIFVFESGLLLVMAFDRYVAICYPLRYTTILTHPLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLLLDILLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVCIIILFYGPGIFTALTQRFGRHIPAHIHILLANVCILVPPMLNPIIYGIKTKAIQEQVALILFPKYR", "length": 314 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FH98-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VCHYGNYYSGLSCSCGYGCGYSRCGCNCDYDKCGYRCGYGGYVYGCCHLSCCGRYRPYGFY", "length": 61 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FHY5-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "DTGSCGAIVLTQTPLSLSVSPGEPASISCRSSQSLEEYGKNWLSWYQQKPGQSPRLLIYQATNRASWVPERFSGSGSGTDFTLKISRVEAEDAGVYYCQQYKEFPPTVIQPLTQTPLLGAQLHTWLCVVWGAEGQKL", "length": 137 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FIZ4-1", "protein_name": "Envelope glycoprotein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRPTLSRRHLPTRGGEPKRLRIPLSFASITWFLTLTITPQASSKRLVDSLTSPKPLSLTWLLTDSSTGITINSTQREAPLGTWWPELHVCLRLVIPGLNTMSTPPDILRAYGFYVCPGPPNNEEYCGNPRDFFCKKWSCVTSNDGYWKWPTSRQDRVTFSFVNSYTSYNQFNYGHGRWKDWQRQTQNRQISCSPSDLDYLKISFTEKGKRENIQKWINGMSWGVVYYRGSWGGEGSILTIRLRIETQMEPPVAVGPNKVLTEQGPPIQGQRPSPNPSDFNTTSG", "length": 284 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJ61-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSTKNKHLMKGSKKGPKKKVADPFSKKDWYDGKAPAMLTKKRNIRKTLVTGTQRTKITSDGLKGHVFSSEPCQSAE", "length": 77 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJT7-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKNPEVRKIHSAVFLITYLSTILGNLLIVVTMVTSQSLRSPMYFFLTSLSLMYVTYSSVIAPKMIVDSFSETTAISLEGCMAQLFAEHFFGGVGIILIIVMAYDHYVVCCLLLGGAWVGGSIHATIQLLFICQTPFCGPNVIDCFMCDLFTLLKLACMDTHLLGILVILNSGVMCMAIILILITSYVVILCSLKSYSFEGQHKALSTCGSHLIVVVLFFVPCIFLYVMPVATYPIDKAMAVSFTIVAPMLNPLTCTLRNAEVNNAMRKLWMKQNTLCYH", "length": 279 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKQ6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVQDQDEKKNPMWELGIHKLCLNICEGESGNRLTRAAEVLKQLTGQSPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEIFERHLRVREYKVQEHISLGTKYDPSIGIYSLDFYVVLGRPGFSFADKKHRTGCIGAKHGISKEDAMSWFQQKYDEIILPGK", "length": 163 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKY3-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGKFVKPGKVVLVLAGRYSGRKAVIVKNTDDGTSDQPYSHALVAGIDRYPRKVTAAMGKKKIAKSSKIQSFVKYSVDIPLHKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKCFFQKLRF", "length": 125 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FLM5-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGHQQLYWSHLRKFGQGSRSCCVCSNWHGLIRKYSLDMCHQRFCQHMKDPGFIRLD", "length": 56 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FNC8-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLTNYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIALISASYVFILHSVIRMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 301 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP10-1", "protein_name": "Ribosomal protein L19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSVLRLQKRLASSVLRCGKKKVWLDPDETREIANAKSRQQIWKLIKDGLSIQKPGTVHSRARCQKNTLRKGTASAGMPKKSVPERDGNVFKNKRILMEHTHQLKADKARKKLLADQPEARRSKTKEARKRRQERLQAKKEERNRTEVETKFCRLI", "length": 155 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP36-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQDTASIRTRKFRTNQLLPGKQRVIRVLHPGKATVPKTEIWGKLAKMNKRTPDVIFVFGFRTHFGGGKTTGFGMSHDSLDDYTKTNEPKHKRARHGLYEKSKTSRKQRKERKNRMKKVGGTAKANAGAGQKGGV", "length": 134 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FQE1-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQLFFIHSIFIFESGLLLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDVLLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVSVIILFYGPGFFTTLTQRFGRHIPAHIHILLANVCVLVPPMLNPIIYGIKTKAIREQVAHLLFPKQK", "length": 314 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A9J7F7T0-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "LOC100757015", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDYVMQFVEPSGQFVKDSIWLVKRCTKLDRKEFQKVAMSTAMVFAIMGFTGFVKLIHIPVNNIIVGG", "length": 67 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GY23-1", "protein_name": "Tetratricopeptide repeat protein 16 isoform X2", "gene_name": "Ttc16", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTDSSTEESVNVQTQKIPKLQVPETRETTLQRIFGTSQVFYSVSGVVKPRLTESTVPFRVREYYHQGHHCLEQEDWEMAVLYFSRALHLNPDQVEFYIFRAEAFIQLCDFSSALQNLRRAYSYEPENSKYLERLAFVLYLQGQCLYELCDFQEALYVFLQASDLQPQNPSFSYRCMACLLALNRHQDCLSLVTREVKQGRATADVYILRARIYNFFQKPKLCYQDLRSALLFNPKHPQAKGLLQVMVDQAKKSLQDASILAVQGKLHRALKRISCAIENNPLDPNLFLFRGTLHRRLQQFDPAVEDFLKAMDMVTDSQDNLVQKTQRQLLLTYNDFAVHCYTQGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALELCPKDEGANLRMGVLQEKMGLCEQTRRQFQKAEDHFSAAIKYNPVNAQYYLHRAKNRQLLQNIVGACQDIATVLLLNPKYPKMAPLMAKLFPGMSVEEVLNSHVAQLAKLQLRRMIESGPKASHPQSIVAKRLIERQKAQALMESWNWEQLFTRNPEEEVAPSESLQGKTLREKIEFKREVVEEKKVKILRKVTSLSDSYVDQTSSGSEFSILSPSTLETEVSTMEYKSTSNTAASSAERLLPQYLVTTKYKESLGLSMAPNVTQVSEDLHKSLTENIPDDGPRHHSSKAEATQRPKPRKTEPSQSLGKQRPSQRPSITEATKGPKPRKNRPALSPRQRLRRAKAVQAQNWKPRTNSNSQKTSSLLSNIAVIISSSNEAQDQSPVPSKADDISSYNDSTATSSTNTDSLRLSIHLSKPKYSKDQSPSHNKEEVSPTSNNYAAP", "length": 835 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GZF8-1", "protein_name": "Protein EURL homolog isoform X2", "gene_name": "C4H21orf91", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIIKRKATVIHHKGTMNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNLEGVPKSNLLHTRSLRGHKDCFEKYHLIANQDCSRSKLSKSTYEGVKTLLTKKINWIVQYAQNKDMDLDSECSKNTRHHLFNFRHKPDKKLLPQFDSQVPKYSVKGIAGSTGGLSSYTQRILEQRENTDFGLAILQDSDALWPHKHNQAQKKEETSSGPENVQTQNPRYSREELNSMTLDEVEQLNTKLQQQIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNYSKLPCLQVGRAGPRSHLPINN", "length": 304 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7JMJ4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100771730", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDFVNISLVTEFFLVGLTDQPELQMPLFFLFLAVYLITALGNLCLIILTVLNSNLHTPMYFFLFNLSFIDICYCSVFTPQMLMNFILRENIISYMECMAQVFFFCFFVVSECYVLTSMAYDRYMAIYNPLLYNVVMSPNLCLNLMFGSYFIGFSNAVAHTVCMLRLTFCDTNIINHYFCDIPPLLQLSCTSTYVNKLVIFVFASINIIVPTSTILVSYGFILSSIFHISSSEGRSKAFSTCSSHIIAVSLFFGSGALVYFKPSSAVYMNEGKISSVFYTNVVPMLNPLIYSLRNKDIKVALMKSLNSRNL", "length": 310 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AA74KSW7-1", "protein_name": "Predicted gene 3002", "gene_name": "Gm3002", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNSSKLGVWAAGVPPSSPTLLFRRWVMKVESLISQPMTSGKNELQDHLIFISEKALHKRLFQKENGDEGVTRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSPAESRTWHRPGHDLPQREVLEEEH", "length": 280 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9RU54-1", "protein_name": "Small integral membrane protein 17", "gene_name": "SMIM17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSLRPEQVRGLLEPERAKTLLPRENKAWEKRAAFAKDWVAVEVGASGCGSDEKDLPSPKTLVPQEWSSVEEDDESEDSQPHWAAALPTSPSCPSQDTGTGSGADLCLQCSSPRTPPWLPWAFSHTIESALPTPPRAWLWSLL", "length": 143 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AAA9RY85-1", "protein_name": "Core Histone H2A/H2B/H3 domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNMPEPAKSAPAPKKGSKKAVTKAQKKDSKKRKRSRKESYSVYVYKVLKQVHPDTGISSKALGIMNSFLNDIFERITGKTSRLVHYNKRSTITSREIQTTVRLLLPGELAKHAESEGTKAVTSIPALSKYNMPSRC", "length": 136 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0KVZ2-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EFGFRSVASAGWGAACPLGLRHVISCGGRAGLEQKARALSSSSTGLFPEGQQRAPPDFSDDICTDKKKNQERGINKWPTTTRNKNYFFVDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 192 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0L002-1", "protein_name": "Oocyte specific homeobox 2 like 1", "gene_name": "Obox2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ILQSVQNTDMIEGPSFLPKFQMSSYTPMDTSSQLPQEPSWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNWQESQGSSRESSIQMQPGPVMDPGFPTLRSPSGHPSHQRPSRPSSRSGFHVPIEPMALSDKHGGKQTGPVAPRKCRKERTQYSAKQKSVLQEHFAECQYPDKKLCLELATLFGVTENEIKVWFKNNRAKCKQKNVPEALPETNGGPEAVSWSTDFPGSIAVVGCDQGEPMATAILDVDSTPKLNCSQESSLDGNWTYDGAMCCLPEDVLDGNDPVTAGDSGESAPVEAQSDLAAAGAPVAMAVDTQNPEECEDLPLLDEGVWQWMLEDFHQLEDWFTKNYIESPSSASHPLD", "length": 362 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LHI6-1", "protein_name": "CD27 antigen", "gene_name": "Cd27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAWPPLYWLCMLGTLVGLLATPAPNNCPDRHYWIGAGLCCQMCGPGTFLVKHCDQDRAAAQCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECTCSKGWQCRDQECTECDPPLNPALTSQPSEAPSPQLPPPTHLPYATEKPSWPPQRQLPDSTVYSRLPSQRPLCSSDCIRIFVTFSSMLLVFVLGGILFFHQRRNHGPNEDSQAVPEELCPYSCPREEEGSVIPIQEDYRKPEPASYP", "length": 251 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LYA6-1", "protein_name": "Prostate and testis expressed 2", "gene_name": "Pate2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSCLTSELQGSACLCLPSTGSYKHILQHLDLGTMCYKCKKYHLGLCYGLMRSCTLKHRQSCAAENFYILTNRGQSMYHYSRLSCMTNCEDINFLSFERRTELICCKHSSYCNLPMGL", "length": 118 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0M6C3-1", "protein_name": "Prohibitin", "gene_name": "AABR07037878.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNKNIKNSISISVCVGGVGGVRARAHAHAHTSPHACTRVIHAFVMLEVGPRDFVHIKKAFRGIDVKKPVIFDCRSQPRNVPVVTGSKDLQNVNITLRILFRPVTSQLPRIYTSIGLDYAERVLPSITSEILKSVVARFNAEELITQRELVSKQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVEKAEHQKAAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSSSQNITYLPVGPSSVGPSVRQSMFLRLPQ", "length": 286 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58FXL6-1", "protein_name": "Cytochrome P450 2X10.2 isoform X2", "gene_name": "cyp2x10.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDLRGIYSYMLSTVNSLVRDSSLTNFKKEFCVHAYLLSVCIQYQSSVWSSSRSVTMLTALVLLCLGAFLLYLQLRIRRPKNFPPGPAPVPIFGNLLQLNRISPLKDFDKFAQHYGSIYGIYIGSQPAVVLTGQKMIKEALITQAAEFSGRSNNMMFSHVTGGKGVIMADYGESWREHRRFALTTLRNFGLGKKSMEQRILEEVKHICLLLEESAGKSIDPQHLYHQAASNIIASVIFGSRFNYKDAYFQTLITSVEDLTKITIGPWAMLYEIAPVLRIFPLPFQKAFQYFEQITKHVLKVVEEHKTSRVAGEPRDLIDCYLEEMENKSDHRTSFDESQMVTLLFDLFIAGTETTSNTLRTLTLYLMTYTHIQEQCQREIDEVLGARDHVTYEDRNAMHFVQAVIHEGQRVADIAPLSMFHSAKTDTQLRGYSIPKGTIIIPYLSSSLREEGQWKFPHEFNPQNFLNEKGEFVKNDAFMPFSAGPRVCLGENLARMELFLILVTVLRRFRLVWPKDAGEPDFTYIYGGTQSVKPYRVIVEPRMHGEACKFVD", "length": 552 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J797-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "si:dkey-233e3.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANAKQLLKNSLDELVEAELKEFQWYLINDHRDISKAEMEKADRLKTVDKMVSCFGPKGAVKTTVDILRKINQNELAEELENKHKQGNCMSARAEGAVLETCKSPPFDYTNTSRELKKKLKEDYEKILVGNSQTGHKKYLEDIYTDLYVVENETGGRERQHEVIQMESKHNQQDRPLKCNDMFKVQPDTGRKHRRILTLGIAGVGKTVSVNKFILDWAEGKDNQEIVFIFPLPFRRLNLIKEEKYSLIGLLNKYFFSISGGLSSLPEKQGKVMFIFDGLDEYRFKLNFKKDDGFTDVNKEMTVSEIITNLLKRHLVPSSLMWITSRPAASSLIPRDLIDQVTEVRGFIDEQKEHYFIKNSSPEVARNIIGHIKKSRSLYIMCHIPVFCLISLTVLQPLLGQESNEKTPTTLTGMYINFLLSQKQQMKEKYRNDTESEANACSFDEIVLKLGKLAFKQLQKGQLIFYKTDLEKCGLDVRQGSVFSGLCTRMFQEENHYSGEQVYSFVHLSVQEFIAALYVFFTYKNKKANLFLDSWKKELKWKLSEKPLFKLHTAAVKKTLQSKNGHLDLFLRFLMGLSLESNQSDMKELLPWLKLKTGMIKDTTDYIKKKIEEENSAERTINLFHCLNELNDDFVEELQKSLCSGNLTAQDLSSAQWSGLVFVLLMSEETQEKFELQKYRRSDEALMRLIPVVKNTTRALLQCCNLTAQSCESLSSALQSSNCVLRELDLSNNDLQDSGVNLLSNGLKSPKCKLEILRLSGCMVTEEGCGFLSSALTSNPSHLRELDLSYNHPGDSGLKLLSQKLEDPNYTLNKLNLDHGGEKWFTAGLHKYACFLTLAPNTAHIELRLSEENRRVTRVGERQQYPDHPDRFDHHAHVLCRESVCGRCYWEIEMNAGDRVDIAVSYKSIKRKGRGYECVLGQNAQSWALICYVNRVAFRHNMIETRLPVKLMSRRIGVFVDHSAGTLIFHNIYRDSMSLIHSVQTTFTEPLYPGFWVEYGSSVKLC", "length": 1006 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JHM1-1", "protein_name": "Phoenix isoform X1", "gene_name": "pho", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRSKGDTSVGEVMEADPRAELIFETPPPDVVSSINACFEEIDSALKIRRDPSVHSPPSDSDSESLFITQSVTKVVHTKRRLRSSKKPDSISDDSGYVRERRLSENQQTECEEESRSLRSSRRKRSKWEMYASARKATFPFLMKSLKTQHLPIRKHQILENSEVGGFFKCIKKIKTGSVKMGKVISSHLFQSPISDSSEEEDQNSEHDVISVDKALFVPGYKRGINFKWLPDFIRERRTLENYLSNGVDKEKKTEQIIEYRQRNQHPQRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDLEIAECAENSHEGHKVVIEETQRQTVEEASAHLEHEDDLNCKVVEYRKRKRHPKRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDIESVECAENSHEDHNVVIEETQRQTVEEASAHLEHEDDLNCKNQPDVDQPNESNFIGPPQEGDISTQSDTQQTDSDIGSVDLFSPLNSPKRDDQIPNTTSITANVEENDQDSDVTQIESEGQHVSTFTQETQKCFANEEYDSDETHIDTESLSRFKPRTPNKQFTSTKHPEIPQFRVQSPKPPSRQAETVNVQLSPKHLPLSNVPLSEVPISPCESAIVGRQKTMVETETDSPMFKITGPSFLKRKRKRTKDKNAAADFKQHDTNGDVGQMVSCPGDDITGLKAVPIENIEACGVEHEMAIGEQTEELGLKSKELLEESVLSTVNSVSTKSKREKMKKYKVKECEAVENQLVETSKKAKKKKKDKERIATSYPEENNLTNIQSNEGFDSAELRVKEVNQSSQSLNTDQPTCVQTSEEITGETELKKKTTRHETDDPLYESVGLDVTLASQFDVGLRIDEQQEGLVTEEAERDERLQGKAMKVAKGKKKIQDTSFQVDHDIGLDKQRSDSGAKPANLDLDGLESLTIKKKKKKKKKHKLKEKTDPKLDFDFDHNVQFFQTDRLQTTDSVLLDSTHTNKQKKKKLKCQNDTDQSSDLKQLHVVGSKLQTIDLPKTDKHMERTGVSSSDALLEHMDDRTLGMRENNTIQTDQIEHLQTSEEVTRCSSPRLSSDKKREKTSVHPNLDASSVFQFDGFKANEDQAITQNTTKEKQISSEQLENNLVGPPSQVENIANVNSSVLLDHTHMNTLREGQLKEQTYKELALAFGLKQLCIVVNKLKTTDLPKTNKNMEGTGVGSSDELLKHTDDRTLETRENNTIQTNQIEHLQTSEKVERHSSPRVTRLSFAKKWMKTSVDSNLDASSGSQFDGLNSMAKEDWTFSQNMDLPLKRTKNKQKDKERTGVSSDALLKRMDDRPPEMRKKNTIQTNQIEYLQTSEKVTRRSSPRLTRLSLAKKMEKTSVDPNLDASSGSQFDGLKEASKEDRTAPRNSIEEKQSDAISSEGLENNPAHLVSTNKSDNTSPSSQVDNIVGLQSDANSVLLDHTHTDKQKKKKIKHKLIEQTEKELTSEVEDNVQPFQFIELRAMDLPSKRITNKKLKDRKRTGVSSSDAVLKHIDDGPSDMRENNSIQTDKIEHLQTSEEMTRCPSPRLSSDKKRKKKYVDTNLDASSGFQFNWSNGMAKEYSKNSTNISSLDNMHTSKQKKKKKQKLKEQKNVESVGDNVYSLEPDQFSGLQITEIKTKKKDKKRTKQANVEENDLKGILSNKAFKASQTYQLEHIQTSEEIKGRSPNAASKSAKKKKKKKNETKNPQYESVNLDLSLAKEDRTTTQNHTEETQGDGNAVEHLEMNPAGLIKVSKKKKKRENAGIVQLDNIIGLQSGSSTDVKSSVLSDSTDTNKHKKKKRKTLKEQENVEAEGDDVQSVEPDPFSGLQITEMTTKKKRKHKRCEEQRCLRGVSSHEAFKAPPTNLLQHIQTSEEISQCQSPNVAALENGGSPYQLENITEMQPGNSIDINSSEILYSTCTHKQKWKKLKQQENVEADANDVHSAELNLFSELKISEPTTKKKKHKKCVEKCALKDISSNEGIKAPQTSQLEHVQTSKEITQCQSPNAATLKSEKKKKQKRDETEVPQYLDASSVSQFDDVTRLKKQAKVDRTTTQNSSEETQNDDISSKQLEMNPAHLIKVSKRKKKREKAGSPYKVDKIVGLQSGNFTDVNFSQLSDSKRTDKQKKKKKIKLKEQENAEADVDDVHSVELDQFSGLQITKPTTKKKRKHKRCVEESGLRDISSNEAYKAPQTNQLEHIQTSEEITPFQAPNVAALKSAKKKKKKRDKTVEPQCLDASSVSQFDDVKTRAKEDQTLTPNSSKETQGDDSAVECLETNPAGLMKVSKKKKKRENAASPYKVDNIVGLESGNSADVSSSVPSDSTDTNKHKKKKRKKLKKQEIVEADLQTSEEIIQCQSPNVATLKSVKKKKDETKEHQRLDVSSVSQFDDVSRLKKRAKEDRTTIQNSSEETQSADISSEQLEINPAHLIKVSKRKKKRENGRSPSQVGNIVGLQSGNFTDISSSVLSDSTRTDKQKSKQKKKLKEQENVEADANDFHSAEPDQFSGLQITEMTTKKKKKHKRCVEESGLRDISSNYAFKAPQTNQLEHVQTSEEITQCQSPNVAALKSEKKKKNKRDKTDKPQYLDESSVSQFDDVKKRAKADRTTTHNSSEETQKDNISSECLELNPAHLMKISKRKRENKSLGLLSENTADLNSSSLLDGTDTDKHKKKKRKKLEGQENVEADVDDVHSAEPDQFSELQIPEMTTKKKKKHKRCVEESGLKDISSNEALKALQTNQLEHIETSEEMTIKTVKKEKKKRDATEEPHYKSVDLDVSPTESTTEAKLNPTKHKKKRKQSFSGSHDAHEAPERKRKKDRN", "length": 2809 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MGZ5-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1-B", "gene_name": "hs6st1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNDTERNMVERTSKFLLIVVGSVFFMLILYQYVAPGVINFGSPHGYLLGEEDMTIFPTPDPHYVKKYYFPIKDLERKIDFEIKGEDVIVFLHIQKTGGTTFGRHLVQNVRLELPCDCRPGQKKCTCYRPNRKETWLFSRFSTGWSCGLHADWTELTNCVPGVLNKRESKSKKMRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQQFMDCPYNLANNRQVRMLADLSLVGCYNLSTVPEKRRSQLLLESAKKNLRDMAFYGLTEFQRKTQYLFERTFHLKFIRPFMQYNSTRAAGVDLDNDTIQRIEELNDLDMKLYDYAKDLFQQRYQYKHMLDRREQRLLRGHASFHSPFREDGAGGEGTARLPTEDYMNHIINGW", "length": 407 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1EC97-1", "protein_name": "Dual specificity phosphatase 14", "gene_name": "Dusp14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSRGHSTLPRTLMAPRMISEGDIGGIAQITSSLFLGRASVASNRHLLQARGITCVVNATIEIPNFNWPQFEYVKVPLADIPHAPIRLYFDTVADKIHSVSKKHGATLVHCAAGVSRSATLCIAYLMKFHNLCLLEAYNWVKARRPVIRPNLGFWRQLIDYESQLFGKSSVKMVQTPYGIIPDVYEKESRHLMPYWGI", "length": 198 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1XQX2-1", "protein_name": "Neurexin-1b", "gene_name": "nrxn1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMILHLGAHLLFIGLIVCKANAGSSLRFTGSDEQWVAFPMWNACCESEMSFSVKTTHLNGLLVYFDDEGFCDFLELHVHVGKLRLCFSIFCAESTCVLSDVAINDNRWHSVSIMRNFRNTTLIVDDEVKWEEVKSKRRDMTVFSHLFLGGIPSELRSVSLQLTSKTVKDHTSFTGWIMDVKVNDSEPAIISSAGVHEDLCGSENTCLNGGVCSVVEDKPTCDCSQTGYQGKDCSEGLAHLMMLDRGMEEYVATFRGSEYFCYDLSLNPIQSSSDEITLSFRTLQRNGLMLHTGKIADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVGYAMVTISVDGILTTTGYTQEEYTMLGSDDFLYVGGSPSTADLPGSPVSNNFMGCLREVVYKNNDAELELSRLAYQGDPKLQIHGVVAFKCESVATLDAITFETPESFLTLPKWNAKKSGSISFDFRTTEPNGLLLFSCGRAKQHNKEAKSPVTLKVDFFAIEMLDGLLYLLLDMGSGTTKTLALNKKVNDGEWYHVDFQRDGKSGTISINSVRTPYLCPGDSELLDLDDPLYLGGVPESSSGTVFPTGAWSALLNYGYVGCVRDLFIDGRSVDVRRAAELQRAAGVKPSCGKEPSGKCVSEPCLNRGVCREGWSRYICDCTGTGFLGHSCERDATILSFDGSKFLKVQFSAAMHTEAEDVSLRFRSLRAYGVLMASTSTHTTDTLRLELEAGRVRLTVNLDCNRINCTTSKGPESLFAGQNLNDDEWHTVRVIRRGKSLKLSVDDLPTVDGEIPGDHTQLEFHNIETGIITGKRQLPTMPSNFIGHLQSLMFNGKPYIDLCKNGDIDYCQTNAPIGFKSIIADPVTFKSCSSYVTLPSLQAYYYMYLFFQFKTTSADGLILYNSGDGNDFIAVELVKGYLHYISDLGNGAHLIKGNSIKPLNDNHWHNVMISRDPNNLHTVRIDTKTTSQTTLGAKNLDLKGDLFVGGVPEQMYKDLPKLVHAKEGFQGCLASVDLNGRLPDLMTEALVCIGQIERGCEGPSSSCEEDSCANQGVCLQQWENFTCDCSMTTYAGPLCADPGSTYVFGRQGGVITYSWPPHDRPSTRVDRLALGFITLMEDATLVRVDSSAGLGDYLKLHIVKGNVVAVFNVGTYDINIEENGKLVNDGNYHIVRLTRSGGNATLQVDDLPVIERFPPGHIDSHRLGTGRLPYRRLVEESLPKNGRQLTIFNSQMTIRIGGWQKQQVSGFQGQMSGFYYNGLKVFSMAADGDPNVRMEGSVRLVGELQSSSTPHGGATVYQSSVTEISSTTSNTITITYSTPADEQQTTDELLVASAECPSDDEDIDPCEPSSGTLCCFVPPAGPTGPAISSFPGPAEVFRESNGTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDESRNYICNSNGAALKEKNTADDDSGSKSKKNKNKEYYV", "length": 1470 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2A7I1-1", "protein_name": "Zinc finger protein 978", "gene_name": "Zfp978", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFAPHQESGRRTTKRMSASLENTAQCLLTFKDVFLDFSSEEWECLNFAQRTLYMDVMLENYNNLLFVENHCICGNYEKEKVVEQDTQHIFNEHGHIQEKSFKCNESSNIIHESSESTPHKTNHRDATLQSSNLKRHKTGTTKQVCTYKDCVNCLKGSSIISLNQGTHVEKKEHNRNKNLDEVLVSKHKPIVRQNNSEMNTYTCGEFDKCFTQSDNLQSQQRIYPGKKSYKYSESDKCFTQPSHLSIHHTIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTQTSHLSIHRRIH", "length": 335 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A8N2-1", "protein_name": "PRAME like 25", "gene_name": "Pramel25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A9Q9-1", "protein_name": "MAGE family member B5B", "gene_name": "Mageb5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRGQKNKHHRNRLKNKKHNQEKVHPQKDESQEKGHHKRDDFQDHKEARDNAAVEEKSSCSSPSVPGETLEKPPASKTSSDAGWLSCVSSPATVCGDELEFDDGTYFHCGGNSLYSEYRTCQENPCKHCLDMYVNLVEQYVLYKFKMKKLIDRNKLIDLIEPKYRYNFSDIFKRAFENIEIVFAASVIEIDSTNHVYDLVSKLKLPNKGRVCPGRGLPKTGLLMTILAMIFMNGTSASEEDIWKFLNYMQVYPGRKHFIYREPRKLITQDFVKLKYLEYKQISLSDPPCYRFQWGPKAYTETTKMKVLEFMAKGSGVEPSTFSVQYTEALREENQKTKIRKWYPILAQKHCPGHSHQHVQKVMKPQ", "length": 366 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ADW8-1", "protein_name": "Predicted gene 15128", "gene_name": "Gm15128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANREDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVQSERSHVYSGRTNNYTDRPQHDLSNRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESFDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW6-1", "protein_name": "PRAME like 22", "gene_name": "Pramel22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRLLREEALAISSLKDLPNMLFPVLFEEAFIFGYTKILKAMIPEWPFPYLSIAVLIDNCNLESLKAVLEGLDILLAQKVHSSRCKLKEISWRDTNHGLDGIRPGSHEVEGLSEFMEQKHPNCVEKKELKVTTELSVMNGRLNESDTYLLEWTQQRKDSIHLFCRKLVIQSLTKATVIEIFKIVNADCIPELELCSLCLEDLAFLNPYLRQMDNLLELTLDHITDSLSIGDSEMLEERMITLVSQLPTFPCLQKLCINDVYFIYGNLKEFLGCLKKPLVSFCISNCELSQSDLDYLPYCLNIFELKCLYIINIHLQYLCLEPLGFLLESVRHTLGCLALKSCNMGEPHFKSLLPALSQCFHLTDVNFQENELSLLSLKQLLQHTSKLTQLSYEMYPAPHECYDDRGVILSHRIEQFCPEVLDMLRAKRQPKDINFVTTQCSKCGIYYVYDLETQRCRFLK", "length": 460 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW7-1", "protein_name": "PRAME like 23", "gene_name": "Pramel23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVNSPPTLMKLASQRLLREEALAISALKDLPNMLFPVMFEEAFINGHTKILKAMIPLWPFPYFSLGMMIKNLTLDTLKAVLQEIDILISKVVHSSRCKLKEIKWKNTDYGLQGIWPGSHEFDGLSEFMEQKQPDCGVKKELKVITHLKLMEGSLDECATYLLQWAQQRKDSIHLCCRKLKIQGSINATVIEIFKIVHADCIQELELCCLCLEDLDFLNPYLKQINNLIRLKLDEIKGTVSMGESRNIDEEKVITLISQLPTLQHLEKLCINDVSFIEGNLKECLRCLKKTLEILCITNCYLLQSDLDYLPYCLNILELKCLDFSNIPLSHLFLEHLRFLFERVRHTLECPILKSCEMGESQFNSLLPAISQCCQLTEVNFYDNELSLIFLKKFLHHTAKLSQLTYELYPAPLECYDNRDIILSHRLENFCPELLNILRAKKTAQGGHLCYNPML", "length": 455 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AHC7-1", "protein_name": "SSX member B14", "gene_name": "Ssxb14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVISCEKIPMEVLHKPKNICKAFQDISTYFSGEEWGKLTEWQKSAYMYMKRNYTRMTGVTVNQPVFMSGKEQAKQSLVKGIEVHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 168 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AK42-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "Cwc22rt5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSVAHMKQSSGHNRRETHSSYCRSSSPEDRYTEQERFPRDRDYSDYSRSDYERSRRGYSYDDSMESRSRDREKRRERERDADHRKRPWKSPSPDRSPARGIRQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLAQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEEEEEEEEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQRTYENFFGLLAGRFCMLEKEYMESFESIFKEQYDTIHRLETNKLRNVAKVFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKTALTSSSSESSSASDSSDSDSDSSESSSESSSEASDSSSSSSTQSSTSAKGTRKKRQGKARGEEVDKLARGHQALERRQGGREDQRHQEGRTERARSERHRAQNSRDADWRDSLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKKQREKRFFL", "length": 830 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE0-1", "protein_name": "Reproductive homeobox 2F", "gene_name": "Rhox2f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYLLDVGPEEDEENANGVKTLMVLLAGDGRNEGESGRGLPGSGASAAEGYRAGEISAGGPAAQVADLMDDSNQEDLGATACDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHLWRHSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE1-1", "protein_name": "Reproductive homeobox 3F", "gene_name": "Rhox3f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSMSNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDNTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEALRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ASJ1-1", "protein_name": "PRAME like 14", "gene_name": "Pramel14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLEAPPTLLQLAAQCTVRKEVLTISVLQNLPMKLFPPLFKEADILRKAKMIKLLVEYWPYPSLLVGLLIDKTNLETFQAILEGVGTWLKRKYRPRMGKLQVVDLRNGHHDFWDMLAGREGGDQLVETMPEKQEVEGHSRRQRLRVFSDLSFKSSRHEDKQQTHLLQWAKDREGFLHLCCEKLEIGALGVSKVKKVLKLLQPEFIKELELNTVGNLSKLTKLVPCISKMRNLQKLMLVRIFGRHTYTPLEERNVTKILSLFPKLSYLQHLTIDDVYFLRDHMNELFRYLEAPLLSLTITLCQISQSDLESFSQHWNYGQLKHLCLKGVSLSTLNVTPLKFFLESVADTLQTLELEDCRMKDSHLRILLPALTKCTRLTSINFYDNNISRDVLQDLLHRTANMSQLTMELYPAPVEVYNEWSYVQVERFSQLCAELMNTLITVRRPKSVCFGTYSCYDCDTHCIYGNQTTFCECLE", "length": 475 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ATW2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIHNVTEFFFLGLSSNQEVQRVCFVIFLFLYMAIVLGNLLMVVIVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLIVDLLAEKKSISVWGCMAQLFFMHFFGGIEMFLLMMMAYDRYVAICKPLHYTSIMNRQVCTVLVGMAWMGGFVHSLAQVLLIFRLPFCGPNIIDHYFCDVLPVLKLVCSDTFLIGLLIVVNGGTLTVISFVVLLSSYAVILFHLRTQSAEGRRKALSTCGSHVTVVVIFFAPCVFIYLRPTATLPIDKMVTVFYTVITPLLNPIIYSLRNAEVKKVIKILCTRATKVDKK", "length": 309 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWL9-1", "protein_name": "Reproductive homeobox 2C", "gene_name": "Rhox2c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSVNYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGASAAEGYRAGELSAGGLAAPVADLMDNSNQEDLGATGCDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHGWQQSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWM0-1", "protein_name": "Reproductive homeobox 3C", "gene_name": "Rhox3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BED8-1", "protein_name": "Predicted gene, 58953", "gene_name": "Samt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQFVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEE3-1", "protein_name": "Spermatogenesis associated multipass transmembrane protein 1d", "gene_name": "Samt1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQLVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI6-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 10", "gene_name": "Msantd5f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLAWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI8-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 8", "gene_name": "Msantd5f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLVWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFR3-1", "protein_name": "Histone H2A", "gene_name": "H2al1j", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTHSQRGEFPLSLVDRFLPEGNHSGRLSSSAPVILDSVLEYLSSNILELAGEVAYTTGRKRIAPEDVGLVVQNNEQLCQLFKPGATSVFDPPEPDDN", "length": 109 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFZ7-1", "protein_name": "BTB domain containing 35, family member 9", "gene_name": "Btbd35f11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BH64-1", "protein_name": "Secretoglobin, family 1B, member 30", "gene_name": "Scgb1b30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLTGALLLLGAALLLTSEGDCGLCPVLQKKVHKFFDGTTEEYVEYLKQYNNDPLVLENAANIKKCSDRMLAEEDKTQATNFINKVTGSRSC", "length": 92 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BHG6-1", "protein_name": "BTB domain containing 35, family member 7", "gene_name": "Btbd35f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSFGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI40-1", "protein_name": "X-linked lymphocyte-regulated 4A", "gene_name": "Xlr4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI45-1", "protein_name": "X-linked lymphocyte-regulated 5A", "gene_name": "Xlr5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKKKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIMETQDQDISMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI50-1", "protein_name": "X-linked lymphocyte-regulated 5B", "gene_name": "Xlr5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQQTIVEKEISKVQNRVIMETQDQDIAMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI74-1", "protein_name": "SSX member B6", "gene_name": "Ssxb6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWVKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEIHDSDDECFEGSFGVTPIKRMKLTSVTISIHNVEGSHDSGENDSNLAETGGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BIM8-1", "protein_name": "Major urinary protein 18", "gene_name": "Mup18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 181 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CEK7-1", "protein_name": "Major urinary protein 14", "gene_name": "Mup14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG71-1", "protein_name": "BTB domain containing 35, family member 19", "gene_name": "Btbd35f20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLQPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKMRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTLKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG92-1", "protein_name": "BTB domain containing 35, family member 10", "gene_name": "Btbd35f10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CGC2-1", "protein_name": "BTB domain containing 35, family member 3", "gene_name": "Btbd35f4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQRMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 496 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A3KG49-1", "protein_name": "PWWP domain containing 4C", "gene_name": "Pwwp4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSEYVLCGWKSQLCPARVLSRPRTPAHSKRRGVPFLEVQILPVGEKRRVRSSKVRPLAKSEIISINSLAGKESRGRGSPGQTRASRRALKVALDGLGEGSSFFQGGRAGSRRTSTLAPKVPKEQASSSSSSLGQRLRLRLRQLLPLSLCQRLHLHLRLRLHLHMHLCLQGRNQKGQGLSQRSPGKRVRPDPGPVMMGSQNVPAVPVGEAQAHTAAGLPRSEVEGDVLRGTRVWPSYSKKTPLGKAGGNPGKRKPGTGKRKLRSLSAPASRKGTRSKTEQQAASGPPRHISISPKALKQRVRCAGLEIRAAGAQRKTALAENKDHPGLGTPKPDSKRASAACMPPVLRLRRSLRIASRKKKTHVLCALCGLPEWEPQVHSKVTNTRFKRRGARVQKDAKATNVVSAQEPSTIEQGTLVWFKFQDLPFWPAVVKSVSKIDKMARVLLIEGNMQFERRGIRVPLRKLKHLDCGEKVSLVRRASRLYAQGINWCFSVIDHYREGLSRGSLLGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVSYAELEDWEEETALGGKGPYKKLLPDRMRAAWDRANQKLVDFIVKRKGADQHLLDIVKGRKPSRWLDDLWKSKREVFCIETYLEDDDQLHLVARHLQEVAKEADEALLSLARGDKVRFTMEVLFPEAIIYSIAALDELSYKEAEEKYLRGPPVHYREKELFDKTILKAARKRSAARIRAARDPPVPTP", "length": 728 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A5WVZ0-1", "protein_name": "2.7.1.138", "gene_name": "cerk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKQSTLLCSELSVQRRLYEVTLNCAILAWKDVQNAKKHTGRAIYGAVKAGSHCVPVCEIIAVQEKEDDSPCKDTGKWQKVPQSPTDSCQHAFTVYYVERTRQHCWRCSNVTFQYSEHSLCLLWIQTIKEQLALLSAQSTEELAGVHQPLRRKTTRQADLRPQSGPHLFPGFHFHRRDWPHSFSAHPSELRFYIIADGKEPVMKCTGDCFSPRVQLHHLMQLIDGLHQASRKMQFNCQMNIMMFLPPLYHQPGNNGFSLFVSIVTEHANHARDHLKAEADLKKYDGVVCVGGDGMFSEIMHGLVSRTQQDAGVDENSTEETLIPCGLRIGIIPAGSTDCICYATVGSNDPVTSALHMVVGDSQPMDVCSVHSDDRFLRYSVSLLGYGFYGDVLKDSERKRWMGPARYNISGVKTFLSHRYYEGTVSFLPAEENLGTPRDKVQCRSGCSICRRSSSDKLLSKEDEASVSDVDCRDTWTVIRGKFLAINAANMSCACPRSPKGLSPSAHLADGTTDLILVRKCSRVDFLRHLLRHTNKKDQFDHSFVEVYRVKQFRFTPRFQECGSEMDLRESRAGGKHFFCQICRENRACGCMSSQSNWNCDGEILPHTAIQVRVHCQLIKLFARGIEEQPVFEDLYAHCQLNNPPNHEP", "length": 649 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWD5-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "man1b1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLPSTRKDFVSLTLSESGSYSNSKQWRRQSCWRKWKQLSRLQRSLILLTLMLLLVCGIATSPTLIGHWRGMNGDDVKNSFVVDLKNEYRSILPEPPSERKDFDRRGAFGLEKLLQGKVNVSGVLGDQNHGLDLKNADKGSEGQKPIISWRGAVIEEEQASDTDTKDTENQGDPASLALAESRLEAVREAFRHAWKGYKDFAWGHDELKPISKSYGEWFGLGLTLIDALDTMWILGLQEEFAEAREWVAKELSFDKNVDVNLFESTIRILGGLLSTYHLTGDNLFLDKAKEIGFRLMPAFSTPSKIPYSDVNIGKGTAHPPRWTSDSTVAEVTSIQLEFRELSRLTGDPKYKLAVMEVMKQVHKLDGKQDGLVPMFINTNNGLFTHQGIYTLGARADSYYEYLLKQWIQGGRIEQELLEDYLQAVEGVKKNLLKKSTPLGLTFVGELSHGHFSPKMDHLVCFLPGTLALGVHYGLPADHMELAKQLIETCYQMYAQMETGLSPEIAHFNMHDGSTQDVDVKIADRHNLLRPETVESLFYLYRLTRDKKYQQWGWEILQNFNKYTRVPTGGYTSINNVRDPSYTSPRDKMESFFLGETLKYFYLLFSEDPTLISLDKYVFNTEAHPLPVWPQAE", "length": 632 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NCW0-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 3", "gene_name": "USP17L3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALASGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NCW7-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4", "gene_name": "USP17L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATEESTLDHWKFPQEQNKMKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSMNSTDQESMNTGTLASLQGRTRRSKGKNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NDS4-1", "protein_name": "TBC1 domain family member 3B", "gene_name": "TBC1D3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGRKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NJZ7-1", "protein_name": "RIMS-binding protein 3C", "gene_name": "RIMBP3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKDSPSPLGASPKKPGCSSPAAAVLENQRRELEKLRAELEAERAGWRAERRRFAARERQLREEAERERRQLADRLRSKWEAQRSRELRQLQEEMQREREAEIRQLLRWKEAEQRQLQQLLHRERDGVVRQARELQRQLAEELVNRGHCSRPGASEVSAAQCRCRLQEVLAQLRWQTDGEQAARIRYLQAALEVERQLFLKYILAHFRGHPALSGSPDPQAVHSLEEPLPQTSSGSCHAPKPACQLGSLDSLSAEVGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHELIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARDLSEQASAPLAKDKQIEELRQECHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQRESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSEVRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQRDPQKALCDLHPSWKEIQALQCRPGHPPEQPWETSQMPESQVKGSRRPKFHARPEDYAVSQPNRDIQEKREASLEESPVALGESASVPQVSETVPASQPLSKKTSSQSNSSSEGSMWATVPSSPTLDRDTASEVDDLEPDSVSLALEMGGSAAPAAPKLKIFMAQYNYNPFEGPNDHPEGELPLTAGDYIYIFGDMDEDGFYEGELDDGRRGLVPSNFVEQIPDSYIPGCLPAKSPDLGPSQLPAGQDEALEEDSLLSGKAQGMVDRGLCQMVRVGSKTEVATEILDTKTEACQLGLLQSMGKQGLSRPLLGTKGVLRMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALTPAGVSCYTFQGLCPGTHYRVRVEVRLPWDLLQVYWGTMSSTVTFDTLLAGPPYPPLDVLVERHASPGVLVVSWLPVTIDSAGSSNGVQVTGYAVYADGLKVCEVADATAGSTVLEFSQLQVPLTWQKVSVRTMSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCPQKLSLAPPSAKASPHNPGSCGEPQAKFLEAFFEEPPRRQSPVSNLGSEGECPSSGAGSQAQELAEAWEGCRKDLLFQKSPQNHRPPSVSDQPGEKENCYQHMGTSKSPAPGFIHLRTECGPRKEPCQEKAALERVLRQKQDAQGFTPPQLGASQQYASDFHNVLKEEQEALCLDLRGTERREERREPEPHSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGPQQLGTGANTPARVFVALSDYNPLVMSANLKAAEEELVFQKRQLLRVWGSQDTHDFYLSECNRQVGNIPGRLVAEMEVGTEQTDRRWRSPAQGHLPSVAHLEDFQGLIIPQGSSLVLQGNSKRLPLWTPKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLHGH", "length": 1639 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A7TZG3-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 9", "gene_name": "Skint9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLLLECTSGSLIPPAEMTWRDSNGNIIPHSTAFNSQDRDGLLYLKSSILLKNRAKGPITCSIYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSIYLITIIFLNFLRGILVFCCLRRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRSRAFLLDDTYPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNSSKSDDSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS", "length": 319 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A7XV14-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 11", "gene_name": "Skint11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSASCLPGFFMVCILLKITVLTQVMSLDIQINTQIPDTEEGVLVECTAESLFPPAEMTWRDSKGNIIPPSSTFDSQDRAGLLCLKSTILLKNRTEGPITCSIYNKTTNQEKRRSIILSDVLFRPQYMSLMSNNLLYLGIYLIFILFLNFLKGILFCLTKRLVHFRKRMIKIKKVWSNKTRACCPLIWEFLEIVLFIAFLPLYLMFRIRVFTLDEAHILYNNWLWKVCKTLIAMMILFTVLILFLLWTLNRYGKMPCLSSMNIDVSTHDAEQNSSKSAKFQENYDVAGQMILETYEETIFCQHQESCEEYNYDPLLLSSLDALGTCEDEKFSQHQESFEEDEDLQSFSDFKIELYSKLGNLTH", "length": 364 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B0BMZ6-1", "protein_name": "Cilia- and flagella-associated protein 119", "gene_name": "Cfap119", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MITPRSSQSLEMKVQTELEHSPKLQEEPDRSPSLVDSSVIRIGTDEQNESPAEATSSPVEVAEDPGANLFPPPLPQPRICMWKYLDIHSMHRLEKAATVEEMREVLAELLELGGPEQSLRDAIILDLFSHALIFCRQQGFSLEQTSAACALLQDLHKACVATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALADYVVNTYFRHFKLYKYVFTPQVRLDLSLSYMGLQSLHLWPEEKEDEEATVEQAATPQEEEPEAVTEAEQQPSEVCILQTYIKCQLNKELRQLQQLVEERLKESEERLSNRLAALERPYQTPPSKGKSKAK", "length": 332 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0G0Z9-1", "protein_name": "Probable polyketide synthase 6", "gene_name": "pks6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLKNIDLIEKGVAIVGIGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSEASLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGASNIDYQHTNKHQDSVLKNAIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSDISIVGGVNLILDVEMTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECVGVVVLKNLQDAIKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSAPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTAIQIYSKSNYLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQSTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNLNIELPLYQWSDELYFAQNQVLEQHRKGGPPIDHLGLSNSYYSPFKNSYKTLIDINYKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDHKSNEWIQSSNSNFQLLDHGNDIPSNYNIKEIIKNKCNLSKLTKNELYKNIKSKTGLNYTGVFQGVTECYIGDNCTLSVVSLESQTNSFLNIPILDTCLHGMLILINDQCQIVFDKAIGFKYYSSNIPADFKENKDSFYVYSNLRPRVGGDSYHGTIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFQSSLNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSFEEKDDTYFEFNKVIIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKIYKCSYLRKKNQVISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYHPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLTTNGQLVFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCGMPQQSWYQLLNSCNFKDIVMSKECIFFGSVIQAQKPPISLLNSQPKYDNIIIYGGSINSSFVENIKLDSNSKSLFQIETIQEFNKLISKSTITNDSIVYFIKTLETLSLDNFKQITLEYIEINQKLLQINSLCKHVLIVSDSRKTNYLASSAIGAARYFDEFPLLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKKIQIKPSKISHIEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGRDGFGLSTFEILKWKGFKSNLFVTVNSDKTKQYLLKKYGDLITGIYSNTDKSYVAEIKNKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLTKYGRIIDLNSNHLNQSEFLKNINFKYNHGYHNFELSLFQKNKILKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINDILNENQQIRNIDSIFHFAFQQIACKVQEINMKHLNISHGAKSMGAINLHNQSIKRNWKLINFVMASSALSFIDSTDQCTYACANTLLDSFSKYRVSLGLPSTCINLGLIESTGFVSKNESISVFLDGNGIIPTPINRVLGLLDLQIQNASKFTNSMISNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQNKYLPSNRIDYWKNEMKFEESIKPIPNEIRSRNNNSGKIILLTGTTGFLGGFLLFNMLRLDSCKLIYCLIRNKSKSSYPLDEIINNLKYHQLYEKLNKSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKNYNIPSILIRPPSIFLNPETGIGHSSDLTLLMIQSCYELGYCPNQILNGFILINTITWLSNNITNIIMNDNCWTNSKMNIYNVHGKQIQSSLIIKPLEKHFNCKQINNNDWIDMVNNSNKKSCIKLKSFHSLENIFKSENKGYKSNESQSISLSTKSLLESMGSYNTDLKITDKMIISHIKHIFK", "length": 2924 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G100-1", "protein_name": "Probable polyketide synthase 7", "gene_name": "pks7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNFKNINLIEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYLHTNKHQDSVLKNVIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAISQGYHSILNGTSDISIVGGVNLILDVETTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECAGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNEKLSVNEIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRKNEKPVSMMINNFGVTGSNCCLLISEFKKQDYEPYENNYKSNNKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLCQRSVIAASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLINSKLSKYYGYSVLEKLRSIGDDDTTSIHDPNISQPAVCMISVSLFELYCHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYHRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSVLKLNIQSNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIINPVRFTQTISNIYKHIESNQLNNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNKKIDLPLYQWSDETYFAQTQTLEQHREEGPPIDHLGISNSFISPFNNSYKTLIDINNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNQWTQSSNSNFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTHIKSKTGLNYTGVFKGVTECYIGDNCSLSVVSLESQTNSFLNIPILDTCLHGMLVLINDQCQIVFDKTIGFKYYSSNIPAYFKENKDCFYVYSHLKSKSADSYHGSIIVMLSDGSVLYEIQEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSQIPTPSYFKSIIYENDSFHSIVNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKFYKCNNFKKKNQIISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYLPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQVVEQMYQLLTPNGQLVFVEPPYKSILIDSIVGSFDQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDIVMSKECIFGSVIQAQKPPISLLNSQPKHDNIIIYGGGNNSRFFENIKLYSNSKSLIQIETIQEFNQFINKSTITNDSIIYFIKTLETLSLDNFAQITLEYIEINKKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSKISHIEASSIPIDYLASFISLFNVGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFKSNLFVTVNSDETKQYLLDRYGDFISGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKNARIIDLTSNHLNQSEFLKNINFKYNHSYHNFQLSLFQKNKIQKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSIDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYACANTLLDSFSKYRVSLGLPSACINFGSIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQCGREI", "length": 2513 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G101-1", "protein_name": "Probable polyketide synthase 8/35", "gene_name": "pks8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLEIINLIDKGVAIVGVGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSDAHQIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYQHINKHQDSVLKNVIAQSAYAVSNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVGMIKAYSYLSMLSKTHGKCKAFDESGDGFTRGECATIVVLKNLQDAVKDGNRIYCVINGSSSNVDGGGHMDKVNLYSPSKQSQFNNINSAFKSTNGKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRINEKPVSMMINNFGVTGSNCCLLISEFKKQDYESYENNNNNKSNHKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLYQRSVVIASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNDEIFKKSIDLIDSKLSKYYGYSVWGKLTTIKDDDLTSIHDPIFAQPALCMLSVSLFEIYCHWGVNPSFILGHSLGEISAAYCSGMIDLDTFCYTVYYRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNDIVFIEIAPHPTISFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYSINFKCQLENKKSNQSINLPLYQWDDELYFAQTQTLEQYTKEGPPIDHLGLSNSYYSPFKNSYRTFIDINNKPFQYLKGHMVKGKYYFPGCGYIDIIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTQIKSKTGLNYTGVFQGATECYLGNDCSLSVLSLKSQTNSFLNIPILDTCLHGMLVLINDQSQIVFDKAIGFKYYSSNIPSDLKEYKDSIYVYSNLKPKNADSYHGSIIVMLSDGSVLYEIQEVIFKSLIPIKHSLKIEYPNDELYKVHLQSKDSQIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKNQRLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSKIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCSYLRKKYQMISHVIIHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYRSLTIDESLLENQAIKPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFIEPPYKSVLIDSIIGSFEQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDILMSKECIFVGSVIHAQKPPISLLNSQPKHDNIIIYGGGGNLSFVENIKLDSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNYKQITLEYIEINQRLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILVDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNNNNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSNISHNEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVDLDETKQYLLDRYGDFITGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKSGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFQLSLIQKNKIQKCLYEISHAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAVNLHNQSIKRNWKLINFVMASSALSLIGSTDQCTYACANLLLDSFSKYRESLGLPSACINLGSIESTGFVSKNESISEFTDGIGYVPTPINLVLGLLDLQIQNAGKFTNSMLSNLISSKFKNIQQTSLFLKFDYLMNLNDNSEQTKKENIGNKNIDELFIEKVSELFSTDQSRINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIKQLQNNTINISIKMILNSLMKNNQI", "length": 2514 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G110-1", "protein_name": "Acyl-coenzyme A oxidase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKNRIEIIKKHLEVNNSQTTNNKDEVLEKELFNSIDTNINVGELKLLIDSVEESKYKDETREFIRNHPKFKENFIGLDMATYRQLVLEQCAAIANRGLIHFTDIKNNLHRYIGALEMFALYNNNILTKLSVQYTLFGGPIIFLGTSRHEKYIEDANTLKTMGCFAMTEIGHGSNVRGIETTAHYDKQTKEFIIHSPTPTSEKFWIGCAYLHATYAVVFANLIIDGTNYGIHAFIVPLRCPKSGAIMKGITIKDCGHKLGLNGIDNGQIRFDQVRIPRENLLNKYSDVSEDGVYKSQFNTPIKNFAATMSPFIVGRMAITKGCSGAAKTSLSIAIEFSHIRKQFGPSSNKELPLITLSSQQRRLMAPLARTILFDLYIQRLTNELCQEKLPASIHAHCSGIKAVYSWFCVAALQTCREACGGQGYRSANRIAEFKNDCDIICTYEGDNTVLMQQLAKYLLGVKQKQTNTTTNRIYLDGEDAKSLFFNFSNINQLFETREEMRLAELKQIIDNSKESAYFAFNNAIPWAVKLGFAHMTKIVFQNSINTLKLKNVKPLTHLIMLDALVSIEEDLGWFVSNHLISPNVAQSIPFLIQDLCFEVTKVSKQIIASFDIPENCKPSSKDLISDLF", "length": 629 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G138-1", "protein_name": "Probable polyketide synthase 21", "gene_name": "pks21", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLENKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSIAMGFQSIQNGTSNLSIVGGVSLLLDPYISKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSKTSTPSKPLLIGSLKSNIGHSEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNNNEKPVSMVINNFGVTGSNCCLILSQFIEQSINQNGNGHSYPAESQQQQQQRFLIPFSANSVKSLKNYEDLIINDIKISTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTNNDKSSNITIKRNQPLVVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLNLKENNIFCAFLGSLSSFHTSSQHSTKNEILPLDIPSKQSRIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDVNFKCQFNHNDDDVSSIRNSKVNISLPNYQFDEQHYWKVDINFEQYRLNGPNVFNSLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNQDIIINNLEFLAPFVLKENVKHTLQTNVYQLGNTDYRVTFNIKDNKTNQWVQTCTGNFQLISLKDNNNDHSSKYDINQLLSECNFTTLSKQEVYKHSRSITGITHLGAFQGIEELYFGNDCIISKIQVNTENFDIDGKPVYQTYDKSFFNTALLDSCSQTIVGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLESDSYKSSVLVLLEDGTKLLEMDCISLHSTLPLLNSLLINNPTTELFTNNLQCKDSLVNILSIDNNQTFSSISSSNTVTEIIKQTIKPIINEKIVFRILQSFSDLELSKQIIETLNQIFDDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDGDDETIIKSIFNILSSNGLLLIIGDDIGDKYNIDSLINLGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKESKYTNEFMKLISNNHISCKQTIISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGTARYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNQIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISNENQNCEFKVGDNVFGIACDTTASHVIADVLYVSHKPENISHVEAASLPVIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIELMHINKKVVSRLLKSISNALNENKLKPIPITTFQIEDVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVGDPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCSYVSANLVLDSLSRYRKSIGLPSTCTNWGAIKSAGFVSRNELVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKNSNLIVSKFNYDSIKKLSSETSTFQRLDFILNSIKEKDNDSNGGENSVSESIQTKILNKISELLSIEQSKINTDIRLSDYGADSLTSVQLKNFIDKDIKSNVITLQQLQNNTIDMNIQTILEQIKKLDSNETKGKSKNIIKKDSAPTLDYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKIKVIVGNLASPLLGLSKLDFDYISNQINLIINSGADINLASNYEESKVVNIGGFIELIKLSTTGDYQKPIVGFSSVSVFFNASNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLLREVAKRGIPSMLIRPPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPKIDKNILTSPIGWISLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSAMNPSFSFLEKQYGCEMVEYEQWKNIINQSKILSCVKLKTFHSLDDLYNIYNLGNGFGVSKKTKELLQSMNSYEGGMVNEKMIQNHINYIFKN", "length": 2779 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G149-1", "protein_name": "Transmembrane protein 184F", "gene_name": "tmem184F", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSHINIIYIIWILLFFFTCLISFFLVNRHLVNYSSPNVQKNVVRIVMFLPLNSGLSILSSIFPGIAIFNSLVRNCYMAFTAHCFFSMMTNSIGEKNMLDLFESQGKMKFLCCKVMKLNRKLFNTLRFGSIQFFIVKIFCSIATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKYRIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIYSYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENGDKKPKKNIEDQNQENSNDQPLSIQMA", "length": 348 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G188-1", "protein_name": "GATA zinc finger domain-containing protein 16", "gene_name": "gtaP", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSYQIQNQPYQQIQNTHPSFQQVQPMQVPHLQQQQQHQTMIAQQQHTPPQQHTPPQMNMIQQHTQPMLSQPQISLQMQPPSPILASQQQQQHMQSSPILASSNLTNSNNASQTTLPIITSKLLLKKEPIDQEVVNSTHKTTTTNNKPPKQSKRKEKERLEEEKQTVAQQQQYQPPFIPLASNESNSDNPFKGSHAYGVSTTPYGNSQFNNNNNNNNNNNNNNNNSNNNSNNNNGNNNINNNNNNSNNNNNNNSNNNNNNSNNNNGNNNNNNNNNNNNNNNNHNTNNNNSNSNNNNNNGYQQDKKDDYSMMIWSEVGRKINILIRTTSKATKGTPISTQEIAEAIGASNGVTADLVELIKSINDPTYVRKLPPSSISNTPTMGSQSGGMVYNSSPMLSPSTMSPILQHGNYQMGGDMYFGGNNQFSGDKQSALNNVKNSKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVTNTPEWRRGPNGAKTLCNACGLAWAKSVKSEKQKELLANSTGVNITEPKKAQKRKKESSDNNNNNNNSSDSNKVLKSDDGSNNTNLTNDDDNGYPSSPNSSNSTSPSSHNINNNNNNNNNNNNNNNNNNNNNNNNNNNNIGNNNNNNINNNNTTNSITTPTTTPFPTTIPAMQIVSQLPVMVPQTQQQPHMSGNIISFQALHQNSGYQHYK", "length": 695 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0R191-1", "protein_name": "C-X-C motif chemokine 11-6", "gene_name": "cxcl11.6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKTLAAFLLLSCLIAGEVNGQDRSSRARCFCVDKGLNMVLLKNLDKVEIFPPSPSCNKHEIVVTLKNGAGQKCLNPDSKFTKNVVLKAIGKRMQQSVPHSTTTGTVKSSMTSSTSAPTAFK", "length": 121 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B1AV09-1", "protein_name": "Leucine zipper protein 4", "gene_name": "Luzp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHYSRRSRNRFRRAPVHSERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIDHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESLDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AY40-1", "protein_name": "SSX member B8", "gene_name": "Ssxb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSFCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMSGKEQDKQSLVEGIEVHDSEDECFEGSFGVTPIKQMKLTPVTISIHNVEGSLASGENNSNLAETSGIQVNVWSHRLRERKYRVIYEEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AYI3-1", "protein_name": "Predicted gene 13272", "gene_name": "Gm13287", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNITPMTLGETTSCYSQTLRQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AZM5-1", "protein_name": "Predicted gene 12886", "gene_name": "Gm12886", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLPCSLWLLSVCLLSWCCDAKLPVALDPESESVPKPPVLKTATEIAAIVVFMKTSNETPKSGTYGQSLQDGKNKIKDVEKEVLDACSQLCQSLAQDPNLHHGYILRAYFKEHQFLCCF", "length": 119 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1B0R2-1", "protein_name": "Spindlin family, member 2D", "gene_name": "Spin2d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSKLTKKRAGRKRQRSRSPALPKRNIVGCRISHKWKEGDEHITQWNGTVLDQVPVNPSLYLVKYDGIDSVHALELYKDKRVLSLKVISKRVVSSGVTDSSFADAIVGKEVNHLFEGEHGSKEEWRGMVLSQAPILDNSFYITYERDPILYTYQLLDDFKEGDLQIMEGFSDPPSLDIDLELVDGLIGKHVEYTNDDGSKRDGLIIYQIETKPRVYLVKYEDDVHIHVTHLEKEL", "length": 236 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B4F7F0-1", "protein_name": "Claudin", "gene_name": "Cldn6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV", "length": 219 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B7ZW38-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 3", "gene_name": "HNRNPCL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS", "length": 293 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B8JKF6-1", "protein_name": "BTB domain containing 35, family member 13", "gene_name": "Btbd35f13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRFLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGAINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD1-1", "protein_name": "Spermatogenesis-associated protein 31F1B", "gene_name": "Spata31f1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD2-1", "protein_name": "Spermatogenesis-associated protein 31F1C", "gene_name": "Spata31f1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD3-1", "protein_name": "Spermatogenesis-associated protein 31F1D", "gene_name": "Spata31f1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HLM6-1", "protein_name": "Small integral membrane protein 20", "gene_name": "Smim20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAARNLRTALIFGGFISMVGAAFYPIYFRPLLRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK", "length": 69 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C7G009-1", "protein_name": "Thioredoxin fold domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLILNGNWLVKFGAGWSGHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEYESICIKYNIIGYPSLVFFDEGEIKHYRGPRLFENFKEAIDKHLNKEFVAFSQNQPSKIIVITNENLDLLLTGNWLVKFGAAWSLHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEDNSICKKYNITGYPSLVFFNEGQIKHYTGPRQFENFKEAIDKHFKYGVKWSGHCKKFQPVLENLAQHYNSDIENSKIKVAQVHCEGDDSICKKYNITGYPSLVFFDEGETKPYRGLREFDKIKEATDKHFK", "length": 303 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G010-1", "protein_name": "Calcineurin-like phosphoesterase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLKIKFSIISLFILKLVISKPILKFNNNNQFKIIQFTDLHYGSEPVDDIDTIFSQVNILDYEKPDLVILSGDMVTGYEEQFEDDDRNYWKYWNVFTRPFVERNIPWAITFGNHDGEGALSTNEILKIDQTFNLSLSQSNPVEMHGIANYVLKISSSNSLKSEPASLVYIFDSSTKGCSKLDWGCVHQDQVDWFKNTSKSFNKTDSIAFVHIPPVEIIDLWNNYPVYGNYSETSCCFDNDYGDFVSSLVESGDVHGLYFGHDHENDFHGDYKGVDLGYGRKSGAGSYSSKKPLGARVFQLTESPFTLSTWIREEDGNIVSQVIHPPSEFDRKPLQCKMKDKYSKKELIAIKVIGGFLIFLGIVVVGLIGFFGFKHYKKFKKQTLEMQNLV", "length": 390 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G064-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKDEKQFQQFPNKGRTVQANTDLPKGSTVFRCAPFASSIEDSDKLATEKYCGFCLQRIPKSDSKECLCKNCKLYSVCKSCRSINESAVEPFQIIIKSTFHLGSDTRDMRLLLRIIANIANGKQGMQTPIDDYQDFMGLTSTLDKVDKEHMTKFKRGVTSISSLISSVRGVGYLKNTITIHEILECFSSVLTNAHQFSYATSKEIGRGVCPTGYFNHSCMPNTTWSLDDQGMLLFSTSSNVKKGDELSLGYLANEYPLKNRRRELLDGYYFFCQCPLCEFQSNLSGYLCEKCKEPLLNDSIVYHEPSLTNPLDTGIGLIKHLRKMIDFRQQSVEFKKMFSSEQLSNILQKGVPKHIQSVFNCDASDNEELQQIVEISERSIKSLPLINGEPIDFYPLSDRNYYEYFKQLKNSKISSPEELQRIKDKILSLINPTIYNSFKDKIDKRLLI", "length": 449 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C9JPN9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 12", "gene_name": "USP17L12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLKLSSTTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3YTW8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r258", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSIHQFVILVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAESRATQTILIVVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNL", "length": 314 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTX5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r259", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY1-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r107", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLDFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r138", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YXI8-1", "protein_name": "Predicted gene 10377", "gene_name": "Gm10376", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQAGSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQNNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKILCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAVMSNPCA", "length": 184 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYI9-1", "protein_name": "Predicted gene 7347", "gene_name": "Gm7347", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYY1-1", "protein_name": "Secretoglobin, family 2B, member 7", "gene_name": "Scgb2b7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACFPFFEAYASVLSGSRVWLYQELQAFDATAEEKVALEKIQDCYSEESIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z236-1", "protein_name": "Predicted gene 3676", "gene_name": "Gm3676", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQTVSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQHNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKTLCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAAMSNPCA", "length": 184 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z8D1-1", "protein_name": "SIGLEC family like 1", "gene_name": "Siglecl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLWGLRSLLLLHLGFLSPVLVDTKKTAVEDGLCSTVPCVIEFSKAPLRKPMIVSYRLNENISFHAGTSQPRGPVADLSTEEVEYCILLTHNMLGRKNMTYSLYVGLGAQKDLTQKQELHIPGSSMAGEPVSLTCTIHSTCQESKALFLSWKGPIMSSSTTVPINPSSALAIDPKPEDQDTTLRCHLKLSLDNLSSSKVVKLQLVSPARLLNYSCLLKRTLTCSCSFHGIPTPSVQWWVGRTPVSVNSIDAILHMTSTTLESWTNSTIHLMWEPEIIKSLRCEGKNQYGVHASGIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFFFFLVVLGMKILNWWEENQTCKNEEAPTLKKPVWGGAKPAEVGS", "length": 369 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z8T0-1", "protein_name": "High mobility group nucleosomal binding domain 2, pseudo 3", "gene_name": "AABR07053402.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAERDAQGDEAKAKDEPQRRSARLSAKPAPSKPKKAPAKKREKIPKRKERKADAGKDANNPAENRDAKTGQAQKAEGAGVAK", "length": 86 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z9U8-1", "protein_name": "S100 calcium binding protein A7 like 2", "gene_name": "S100a7l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSSEQEVMKLFDLFQNYHVRRTDKLDVQETKRVLREFFPNFMKALNASGIKILNDLEKEITLDEIWDMIGRMAMAYNKKNSNALKD", "length": 91 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZAM9-1", "protein_name": "Olfactory receptor", "gene_name": "Or4f60b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKVNYSVTSEFVFLGFTNSWDIQLLLFLVSSMFYVACIMGNCLIIFTVASDTHLHSPMYFLLANLSFIDVGISSATSPKMISDLLKKHKVISFRGCVIQIFFNQAIGGAEMVLLIAMAFDRYVAICKPLHYLTMMSPQMCLFFLITAWVVGLMHSVIQLIFIVNLPLCGPNILDSFFCDLPQFIKLACMNTYRLELLVSISSGFMSLVSFFLLSISYIVIILTVLKHSSSGAYKALSTLSAHVTVVVLFFGPAIFFYIWPSSTHLDKFLVLFDAVVTPFLNPVIYTLRNKEMKRAMRRVFRHLMGYRQIS", "length": 311 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZC26-1", "protein_name": "Ferritin", "gene_name": "Fthl17fl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEDAINNHIRLLLQASYSYLSMAFYFDRDDVALGNFKRFFLSKSHNCKASAEMFVFMQNKRGGHVFLPSIAKPDRESWHGGLRAMECAFRMEMTINQSLLNMHELAKGKDDAHLCDFLGQHCLDQQVHVLKKMGGYLTNLRQMGAPEQGLAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCM9-1", "protein_name": "Dynein axonemal assembly factor 3", "gene_name": "Dnaaf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTPAGSGNGFGTVSWWGLSPALDLQAESPPVDPDSQSKTEHKIPELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLELWGNALLRPSVAAFLRAQASHLSNLVPEPDRLEELLPWLSLRPLKFRERDALEAVFRFWSGGEKGPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRWRDTGVAFELRDLSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHNVTELFRDVAAWRGPRAIKGNVEETKSPEPDAPAQEPFTIHFLPLDSSQTLHHKTCYRGRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPPQADLAPPPEVISPVQEALAMSSAIAPLKHVT", "length": 583 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCW3-1", "protein_name": "SPATA31 subfamily E, member 1", "gene_name": "Spata31e1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METFLLLMNSISDFWMSSSSMSTVMDMIFAILCGVGFFFLLIPFLKEYPGSPPPGSKKNISEVVKRRQSKDRKKSVTVDGCRDSQKNSLDIQHDLQTMESPIQHLLLDSSPHPFWNSKEKLNQLSLPQLFSYLKVLEALIQQKFNQLLLGLSSVLSESVVATAWVSREPSSGERKTVRFSDSLGFDQALPLAKGPPQRCLDQPLPHQLVTPSLVGMTEIQEQENLPNSISYQTPSIFQSRARGTAYPTTATGIQVPLPTTNEPCHPGLNWKDIPSCKVQNCQGASSQPTESLARCTLPTKNTRSASIPPEHYLMVHHHEQPQHEEKAINLGEQQRTHARFLPSKEPAQLQGDSPPNSNGYGKNWPELNQPAQPSTLNSKTYKWNQMMGPVPTGMLLKKVIAKYGIPNTIKKDLKLRVKDLLCTSSSTPGESLETKNLTLRTDEHSMNTTENLSFLDPKTTMMKSNIMQLPMKHRQLPCDSKAEPYTKAAFILENLHHQDPGGIRVETASSARLRSPLFEQSPPEVQKTQSSPPPIDSHGHSRSHPDQWQRYQSVQPHALCSQAQPQQSRSIQGTGRSILQPNISVWMSKHERWMRSEDVASGHTSWSSRTVGYRDRVSPSVAKQTNILKIKEESPHVWRANLGSGEITNEQALNNSNEDFEPIEAKRSQGHLQMPTQQNTGYLHLKTEEYSNNDLKVNKQPQAWSVSHHADGSNTVHHAMVKLPSQHSLPSLQNGWQDPKTSQGLGDLLMNRDQSVETQFRVHKDKTEATNDSVFHPSEKRPSNLKYGGISQGERLGRVKSSISSFTQLKDSAKTESKSSPNIGGKREAPSKSSLKFIWNGAQYENLSTKLKGQRDSLKKDIPPPVTEQTQEVVHRINVIYSTAVELQSLMDSLVHKLVKTVGEPSELTRKHMTKVQEYKMESLPFQLGSSSQPSKGLHDPNKSRSVRRMSDDHTSPKEPNNHTFTYRGNRDKMQAGVDVQRVCYQHLDKVKIGFGQHSTPMRNGNPCFHKKAGDKQESSLADQSTGDADQTKPKNEIVGSPHRIPERHNQSSRYREIRDNQEPSVDHKAIDPHQNTKKGMGYSQLMSPKENHPVKISGTAAQGASDPEEIRTKSGKECSPHRSPKMHDHSLRHREVRDKPQPGINTQRAYDQHLNSPKKRMTSENLLTPKGTNHPCWHRVTGDKQQSSLSDQRACDPEQMRRSGMSSYPQRSPKVYHLSCSSEKIGEKLLPLVNDQRTHDKHPNSVKTRGCDNLPTPKGSNHPQGYRVIEDKQQLGLAYRRTCDPGQIKKSGMGKGPCKDTEECNLLYRYKIIGNKQQPGIVHRACDRHQSSKEGMGQGQPMNPKVCHSAKHRRTGGQDQSGVAAQGASNPR", "length": 1373 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDD6-1", "protein_name": "Synaptonemal complex central element protein 3", "gene_name": "Syce3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQELLTETKRKQ", "length": 88 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDJ1-1", "protein_name": "Olfactory receptor", "gene_name": "Or13c3f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDDMDKNNQTFVSEFLLLGLSGYPKTEILYFVIVLVMYLVILTGNGVLIIASIFDSHLHTPMYFFLGNLSFLDICYTTSSVPSTLVSLISKKRNISFSGCTVQMFVGFAMGSTECLLLGMMAFDRYVAICNPLRYSVIMSKEVYVSMASASWFSGGINSVVQTSLAMRLPFCGNNVINHFTCEVLAVLKLACADISLNIVTMVISNMAFLVLPLLLIFFSYVFILYTILRMNSASGRRKAFSTCSAHLTVVVIFYGTIFSMYAKPKSQDLTGKDKFQTSDKIISLFYGVVTPMLNPIIYSLRNKDVKAAVKYILKQKYIP", "length": 320 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDT4-1", "protein_name": "Transmembrane protein 92-like", "gene_name": "LOC100364194", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQEAWVLDALTVIFGLLFSLQGVSSNKTIYKCEDIHCPKGFRCCDNECCLERKIWNTDNEPFRILFIILLVMLPLLCICGLVRRFCPKCRELQHEVRTADHQSPPDPPSIAPLESIWVTSLDPPPPYSQVVQKSTPTEPPPPYSLRPEDSTCPMRETSHETL", "length": 162 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFJ9-1", "protein_name": "Family with sequence similarity 24 member B", "gene_name": "Fam24b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSSFDLRTIIMIVIGSGILAAMFLLTGVVLCLYSKIARALNPSGTGKELDDQLCSDPCKTTQDQIIRVNSLNADTCRPFHGSTIGLENCQPLQCFSACGTYEGANSLTPCLCNTKEGL", "length": 119 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFW5-1", "protein_name": "Transmembrane protein 107", "gene_name": "Tmem107", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRISGLVPSRFLTLLAHLVIVITLFWSRESNIQACLPLKFTPEEYEKQDNQLVAALCLTLGLFAVELAGFLSGVSMFNSTQSLLSIAAHCSASVALSFFIFERWECTTYWYIFAFCSAFPAVTETALFIAVFGLKKKPF", "length": 140 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZG05-1", "protein_name": "40S ribosomal protein S12", "gene_name": "LOC120100003", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEEGIAAGGVMDINTALQEVPKTALIHDGLARGICEAAKALDKRQGHLCVLASNYDEPMYVKLVAALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFEYKK", "length": 132 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGM7-1", "protein_name": "Peptidase inhibitor 16", "gene_name": "Pi16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNCRVSWMPQHSSAAVSGICPPQEGPWSSYSLWPEPPLLREKEAVAKDSRGVDSTLVQTQGTQPSWRHCVSWAGPPDTAPAAPPQPGWCLCGKDFKSSRQTPDRERQRGLATMHSSCSPWVMLPQLPLLLLLLLLLLTATGPATALTEDEKQTMVELHNHYRAQVSPPASDMLQMRWDDELAAFAKAYAQKCVWGHNKERGRRGENLFAITDEGMDVPLAVGNWHEEHEYYNLSTATCDPGQMCGHYTQVVWSKTERIGCGSHFCETLQGVEEANIHLLVCNYEPPGNVKGRKPYQEGTPCSQCPLGYSCVNSLCEPERKPEKAQDSPPRVTEVPGSRETGIPSLATSESLHFSSVTKVSDSLATEPSPAVETKAPPSLATEGPSSMATEAQSFLTEVPSVSATHIQPSLDEGPVNFLTSTHIPVPKSTDKEASSKSRAASVSPEKSLYPKMSPTETGESPPQIQEEAEPKAELPEREDELPEAEVELPEAEAELPEAKAELPVSSEALVPVLPAQERGGPKASLEHSSYPVPTYLPNFPSASGNATGGRTLALQSSRTGAEDPEKASWDSKNSAPVWGPFPGLLLPLLLLAGIF", "length": 596 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGX2-1", "protein_name": "C-type lectin domain family 2, member M", "gene_name": "Clec2m", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTESSLRLSQSSHHRLTFDLKKVVTLWILVIGVIAVLLWGFFSFPKKFTVTRQTKNEVCSDGVKICLHGWNKLNRNCFTHFSHANSWFTAKETCKFHDATLAVFNDQTELDIVMKQMEDIQTFWIGLYKKDFRGPWVWTNGSKYNNWYEVQDYGHCAFLHKSGIDSTNCNDLKEYICTQEGHCP", "length": 185 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZIZ8-1", "protein_name": "Ferritin", "gene_name": "RGD1560203", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEEAVNTHIRLLLQASYSYLSMAFYFDRDDVALENFKRFFLSKSHDCKASVEMFVFMQNKRGGHVFLPSIAKPDRKSWQGGFRAMECAFRMEMTINQSLLNLHELAKGKGDAHLCNFLGQHCLDQQVHVLKKIGGYLTNLRQMGAPEQALAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKK4-1", "protein_name": "Zinc finger protein 869", "gene_name": "Zfp869", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTPIVGLSSPDQGLVSFEDLVVHFTQDEWDLLEASQKSLYGDVMLETFRNLTAVGYEWEDEAIEDHCEEPEVNLRDIVSHSEYTHEYEHKEYEEKPPDANFLTSVEGCVETKTSSGPSVCEVCLKTFGLYHLTYNGHHNYDYKELRGSQTEENDCEGNSCDKTSGSLQKEDKIHTGKKLYVCQECGKAFRYPSALQLHERIHTGEKPYECKDCGKAFRGLSALHLHERIHTGEKPYECKQCGRAFTYLSALQLHERIHTEERPCECKQCGKTFRYSRALKLHERIHTGEKPYECKQCGKFFRSHRTLKLHKRIHTGEKPYECKECGKAFRWLTSLKLHEKIHTGEKPYECQECGKAFRCQASYHRHKITHGGETLYECKECGKSFIYPSLLQVHERTHTGEKPFECKLCGKAFRCQSSLRLHERTHTGEKPYECKHCGKAFSSYNYLRFHERSHTGEKPYECKECGKTFTHRSYLRSHERRHTGEKPYQCIQCGRSFSRHSSFKRHQSVHGESPYEQYLIPLSPFSSKE", "length": 530 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKM3-1", "protein_name": "Protein GPR15LG", "gene_name": "Gpr15lg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLTLSGLFFMLFLCLCVLSSEGRKRPAKFPKLRPCCHLSPRSKPITWKGNHTRPCRPCRKLESNSWVVPGALPQI", "length": 77 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZL22-1", "protein_name": "Olfactory receptor", "gene_name": "Or1x2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKWGENETGVIEFLLLGITNDPQQQRILFWAFLCMYLVTVAGNTLIFLAISSDPHLHTPMYFFLANLSFDDVCFTTNIIPRLLAGHVSGTETISYAYCLTQMYFLISFGNVDTFLLAAMALDRFVAICYPLQYHTIITPRLCVGLASVVWISSGLIALVHTLLMSRLTFCSSIPEISHFYCDAYLLMKLACSDTRINQLVFLGAVVFFVAPCILIVFSYVRIAMAVFQIPSAKGRHKAFSTCSSHLTVVILFYGTVLGIYIRPPDSFSTQDTVATIMFTVVTPMLNPFIYSLRNKDMKETVTRLLHRGSKSS", "length": 313 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZLG9-1", "protein_name": "N-terminal Ras-GEF domain-containing protein", "gene_name": "AABR07047293.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSCCVWTTEGSGLKKDKNEGQGGTWKFMLLSCLQCLWPFAQKEIDLTRDNQAQDHEDQGEHEYAPQVVTEPCRESRISADMVENLVNRLVSSLQGGDPFFIPAFLYGYRQFTTTQHVLDRLLKRFAYFYLGCEEDEQIKSSLCCFLDTWIDQYPEEFSQTILKKLKTYLTVNMPSSDLNLRVHMLLKELRQESNESEGKDDDSVSLPVTLLYKTASAADLSSSVEVGSHTSGDLDIEVWFPSQKVQPEPAYPHETETPQSTIKVISWD", "length": 269 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZMT2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "Ndufa3-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRSSDFFKNAQAKEPVLVVSFSVWGLAVILPMISPYIKYAGVISKATPYNCPVPVRDNGNVPGVPSQPQERLSPSLERLKNL", "length": 84 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNA3-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "AABR07049918.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQETKNVVNPLFEKRSKNFGIGQDIQPKRDLTRFVKWPHYIRLQWQRAILYKQVKVPPAINQFLQALVRQTVTQLLKLAHKYRPETKQEKKQRLLAHAEKKAAGKGDVPTERPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKMGVPYCIIRGKARLGRLVHRKTCTTVAFTQVNSKDKGALAKLVEAIRTNYDDRYDEIRCHWGGNVLGPKSVARIAKLEKVKAKEFATKLG", "length": 266 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNR1-1", "protein_name": "Elongin-B", "gene_name": "Elobl9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVFLMIRRKKTTIFIEAQELTTVLELKRIVQGILKRPPEEQLLFKDDQLLDESKTLRDCGFTSRVAKAQDPATVGLVFREDASEGLQIHPYSTPLLPSVMKTGTDSLE", "length": 109 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNU6-1", "protein_name": "Olfactory receptor", "gene_name": "Or5p66b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSWLENGNHTTVAEFLLLGLTDDPVLRVILFTIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLASVDIGYSSSVTPNMLVNFLVERNIISYLGCGIQLSLVAFFGAAECFLLAAMAYDRFMAICNPLLYSTKMSTQVCILLVVASYIGGFLNASFAMVSFCSFLFCGPNIINHFFCDFAPLIELSCSDVSVYVIATSFSAGSVTMITALVIAISYSYILITILKMHSTEGRQKAFSTCTSHLTAVTLFYGTVTFIYVMPKSSFSIDQNKIVSVFYLLVIPMLNPLIYSLRNNEIKSALKKQIWRKTVS", "length": 314 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZPU6-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC134485591", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRSTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAEGIIVNKQVKGKILTKRINVRIEHIKHSKSRDSFLKRVKENDQKEKEAKEKGTWVPLKRQPAPPREAHFVRTNGKEPERLEPSPYGFMA", "length": 160 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQ96-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC102550668", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKVKRRGTRYVFSRPFRKHGVVPLVTYMRLYKKGDIVDIKGMGAAQKGMTHKCYHGKTVRVYNVTQHAVGIIVNKQVKGKILAKRINVWIEHIKHSKSRDSFLKQVKENDQKKEEAKEKGTWVQLSLQPAPPREAHFVRTNGKEPELLEPVP", "length": 155 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQD9-1", "protein_name": "Developmental pluripotency-associated protein 3-like", "gene_name": "LOC120096627", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKSSEKVDPVVNPETQMNDGSQREDEEDSPDDSEILQPETLVKVMKKLTLNPSAKPPKYHRHQRVRLRIKSQPVGNRSERIMREVQSAFPKTRVRTLLSVLKDPIARMRRFVRIEQRQRQLEGNERRDEPFRCLCTFCHYQRWDPSENAKIGQNQKN", "length": 158 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQT0-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "AABR07071101.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILCIKPSSTTKYCLNQCYLISCINKPNLLDGVNGIPLDIVAINDPFIDLNYVVYMFQYDSTHGKFNGTVKAENGKLVINGKPTTIFQERDLANIKWGDADAKYVMESTGIFTTMEKAGAHLKGGTKMVIISAPLADAPILKYDNSLKIVSNASYTTNCLAPLTKVIHDNFGIVEGLMTTVHTITATQKIVDGPSGKLWRGGHGAAQNINPETTGVAKAVGKVIPELNGKLTGIAFHVLTPNVSVVDLTCHLKKPAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSNSHSSTFDARTGIALNDNFVKLISWCDNEYGYSNRVVDLMAYMASKE", "length": 338 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZTK7-1", "protein_name": "Uncharacterized protein", "gene_name": "AABR07012426.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGDLEAKISGYTHISVQRFCYKWTISNFSFCMDGIRENITSPVFSLEGNEEVQWCLRIFPNGVDEESKDYLSVSLGLHSCPKSPVLAKVQFWIINAQGEKHQIKEIPNILSFSPKHQWGLRKFILREFLLSRRHGLLPEDQLILCCKVSVVGPSFSTPGHNMTPANKDPRQMLADDVGELWENSLFTDCSLVVAGQEFRAHKAILAARSPVFRAMFEHEMLESLTNRIEIHDIHLQVFKEMMAFIYTGKAPHLHSHSMATELLAAADMYDLQDLKVMCEDSLCRNLSVKTAVPTLMADLHSTELLKTRVMDFIILHASEVSETLEWKSMVESHPHLVEEAFGSLASMHYFFLEPSLKR", "length": 359 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZV50-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLVARSWVCHKTYVTPRRPFEKSRLDQELKLIGEYGLRNKHEVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIVVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLRLAKSIHHAHVLIRQRHIRVRKQVVNIPSFIVCLDSHKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEKKEK", "length": 195 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZWL0-1", "protein_name": "Ribosomal protein L32 like 1", "gene_name": "Rpl32l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALQPLVKLKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILKPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNLNARLRSAENE", "length": 135 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A176-1", "protein_name": "Golgi associated RAB2 interactor 5A", "gene_name": "Garin5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRLRTSARSPAPAVRMAISPSGPLGFTSPVTQPRREASPGVPTTQGRGVAMKGGRDLKPASGRADRPLAQAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDTVPEESEDEDEVEEGQLQPPEVRAGPRAQGCWARKDGKGPVSCHRGQTRPAGLRTLGALIQPRSFQITKGPEIKPAQLRAREMDF", "length": 303 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A9N2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a77d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQNNSVSEFILLGLTEDPAGQKTLFVVFLLIYIGTMVGNLLIVWTVIASPSLDSPMYFFLAYLSLIDALYSSTILPKLLIDLLCDKKTISLTACLVQLFVEHLFGGVEIFLLVFMAYDRYVAICKPLYYLTIMNQRVCVCLVVVSWIGAFAHALVQVFSVYKLPFCGPNIIDHFACDMYPLLGLACTDTYFLGLTVVGNNGAISVVVFMLLLLSYGIILNSLKTHSQEGRRKALSTCSSHIMVIVLFFVPCIFMYVRPVSNFPLDKFITVFYTVFTPMLNPLIYTLRNLEIKKSMEKLCRKIFTSDRIRISSCYS", "length": 316 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAM5-1", "protein_name": "Preferentially expressed antigen in melanoma-like", "gene_name": "Pramel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVKTPNKLLELAIHSLLNEESAAIQALEEIPRELFVPLFIAAFEGGHKNVLSAMVKVWPYYCLHIGSLSIQEPQHELLKAMIENLPVYPAPSSSSRGPKLRILDLRQDTDCRITCPEVSTKTPSCFYSCAYSDRSITKIERQLCCVNAECKTLLPRPVELLVDLSLDGSLMEKEFLVLLMYKIEESLGSLHVCCRDLQIDKLCKCKCTLKFLDLKCIDQLSVDRGSLSDITSILCRMIHLESLSLSNVTFRSLSGKVFKIFLSHLQRMEHLKELSLSSFCLKNHLDRVLRILPPGLDFLYLPFCDLSYRDFKFMSQSPQVTHLKLLNLSNNPMYWGDFEPFHTVLINLSGTLQHLEINHCLISDSAMSALIPALIRCTRLRVLGFASNPISMPMLVNIMHNLTPMKELKYVIYPIPVHCYERWHFQGSLDRQKLAIVQLQLKAMLELAHREDMNWITYCE", "length": 461 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAN9-1", "protein_name": "Similar to human chromosome 6 open reading frame 52", "gene_name": "C17h6orf52", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGSTLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREELYDSLMNRRWHCLDTVLSNVPDELPQCEVF", "length": 157 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ABB6-1", "protein_name": "Olfactory receptor", "gene_name": "Or13a27c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VNCIWHSKMVSPNQTVVTEFVLQGFSEHPSLRLFLTGCFMSLYTIALMGNIVIIALVTSSTGLHSPMYFFLCNLATMDIICTSSVLPKALVGLLSEENTISFKGCMTQLFFLVWSGSSELLLLTVMAYDRYVAICAPLHYSSRMSPQLCGALAMGVWSICAANASMHTGLMARLSFCGPKVITHFFCEIPPLLLLSCSPTYVNSIMTLIADAIYGGINFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVAMYYSSVFFAYISPGSSYNPERSKFTSVLYSVLSPTLNPLIYTLRNKDVKLALGRILASFSH", "length": 318 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ADX2-1", "protein_name": "Olfactory receptor family 4 subfamily A member 80", "gene_name": "Or4a80", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQSKIVTEFVLLGFTQDPAGQKALFVMFSLMYIATMVGNLLIVGTVIVSPSLGSPMYFFLASLSLMDAVYSTAISPKLIVDLLREKKTISFRACISQLFIEHLFGGVDIVILVAMAYDCYVAICKPLHYLIIMNRRVCILFLVMAWAGGFAHALFQVLAVYNLPFCGPNIIDHFGCDIYPLLLLACTDTYLIGLTIIANGGAMCIVIFILLLLSYAIILRSLQNHSQEGRHKALSTCSSHITVFFLFFVPCILMYVRPVSSFPIDKSITVIYTVVTPVLNPLIYTLRNSEMKNSMEKLLQKILSPNRLRLLCCLYY", "length": 317 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AEJ6-1", "protein_name": "Peroxisomal biogenesis factor 11 gamma", "gene_name": "Pex11g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLNGLASALESYRGRDRLVRGSVGPWRDRSDLEFGQDSEMRKTGQRGGPKGTDIGRLVSYMRTSYLSLPNCWPYKCVLALQIRTLGYGCQLIGGVLVEQCPSRSEVGRRLLVVSAQLSHCRTVLRLFDDLAMFVYTKQYGLGAEEEDVFIRWLSVLSNMADQLYYPCEHVAWAADAKVLQVDSARWWTLSTAFWSLSLLLGAVKSLWTMLKLRQKLRSPTGHFASQLPRSKWRAVEARIWSEALTLLSNLADLANAVHWLPPGVLWAGCFPPWLVGLMGTISSILSVYQAARAGKQAEVDSP", "length": 304 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D6R901-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 21", "gene_name": "USP17L21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E0CXP6-1", "protein_name": "UMAP1-MVP12 associated (UMA) domain containing 1", "gene_name": "Umad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL", "length": 133 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E0CZF1-1", "protein_name": "PRAME like 34", "gene_name": "Pramel34", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRHTNLLKAMVAAWPFPCLPVGPLMKKPNLETLQALLDGIDMRLTREFHPRRAKLQVLDMRNMYHAFWNIRADANDSDCKSKTLDEKQLVKVLPRYARRQRLKVIVNLSISSHFNKSKAYFLNWAKQRIGSLYFCCIKMRIWDPPDQVIRDIFNVFDPEHITELELNTDWTLLQLAHFASYFGHMKNLQKVFLAPLHKNTSPIINITNATEAKCVHKIISQFSQFNCLQHIFMKHVHFLRDYMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALDLMPLRVLLEKVADTLEILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTLKALFQHTANWSKMNVEQYPAPLQCYSELGHVSVERFVQLCQELMYTLRAIRQPKSISFATDNCQKCGKPCVYDQGPILCSCFQ", "length": 475 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1B8K9-1", "protein_name": "40S ribosomal protein S6", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLNISFPATGCQKVIEVDDERKLRTFYEKRMATEVAADTLGEEWKGHVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKCKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPHRLGPKRASRIRKLFNLSKEDDVRQYVVRNSLNKDGKKPRTKAPKIQRLMTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK", "length": 249 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BBD9-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "LOC112445820", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFLPLRLAVVCSSNQNRSMEAHNILSKRGFSILSFGTGTNMKLPGPARDRPNVYDFRAMYDDVYKDLLRKDKERYMQNGVLRMLERNMEKEMPRPERFQECKDLFDLILTCEERVYDQVVEDMNSGEQETCQPVHVINVNILDTNKEATLGAFLICDLCQCVQLMGDMEDRIGELLQAFEEKSGRSFLHTVCFY", "length": 195 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BLY1-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLSSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F638-1", "protein_name": "Moesin b", "gene_name": "msnb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSINVRVTTMDAELEFAIQSSTTGKQLFDQVVKTIGLREIWYFGLQYQDSKGFSTWLKLNKRVTAQDVRKENPLLIKFRAKFYPEDVAEELIQEATQRLFFLQVKEAILNDDIYCPPETAVLLASYAVQMKHSDYNSEHHIPGYLCRDKLLPQRVLEQHKLTKEQWEQRIQVWHEQHKSMSREDAMIEYLKISQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYERSDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKSPDFVFYAPRLRINKRILALCMGNHDLYMRRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLRQIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTKNKDNLATELAELTSKINLLEDAKKKKEDEARKWQRRAIMVEVDLEKTKEELKSKLIGVHIQATSQTENDHDENDESSAEASAELTSTGSFRDRSEEQRITETEKNEPLQKRLQALSSELADARDDSKKTANDLIHAENVRLGRDKYKTLRQIRQGNTKQRIDEFESM", "length": 577 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FA22-1", "protein_name": "Protein tyrosine phosphatase type IVA 3", "gene_name": "ptp4a3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAWLNGLYPVEVCYNSMRFVITHNPTNQTLDTFIEDLKRYDAKTVVRVCESTYDKTPLEKHGITVMDWPFDDGAPPPTKIVDDWISLLKKSFSEDPGCCVAVHCVAGLGRAPVLVAVALIEGGMKYEEAIHLIRLKRHGAFNSKQLTYLEKYRSKKRLRFKDPFKHRSKCWLM", "length": 173 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE27-1", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase", "gene_name": "b4galnt4b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMRFPLKKIRKQFKLLLLLVLLMFAIGFTYLHINQGKAIKLHFNYGKDMERQAEGIGSSPKKHLSSSINPFEHGDAADSQEDGWGGEELNESAQESRANAEMHTLLAQKFLGLPWKPEYKGQANLHVFEDWCGSSVSQLRKNLHFPLYPHTRTTVKKIAVAPKWKNYGLRVFGFIHPYKDGDFQFAIASDDNSELWLSSDESPLNARLLVYVGQHGSEWTAPGEFSKFRSQTSKPVRLMSSRRYYFEVLHKQDDRGSDHVEVGWRPFLPGQKFDVIDSAYISLYTDESSLKMNSVHHIPQTLASHSLALQIYHRTETHTADMLKPDPRDTFYKIPMIDQSRLENVLPSCVYSPTYVVKDFPIARYQGLQFVYLSYVYPNDFTRLTHMEKTNKCFYRESPVYLEKFGFYKYMKMDEEEDDQPVFFPKPDDFLEEEEGVDPEEAINSSNRPVKRSGPSYQTSRITAATASSKPDRLDGGSKSSVFQQEKQYVQFKEQERSKKRTKGERFYRHSQVVDDEMTEIRQVKGSTGVLESQSGSLNEQTGPSEENGDSQTLSLVQRGRSLAWVLPDPALQSESKLIETASPTVKERSPFKLPHLYVLANRILGNAGKPVVEKESNSNKIYITRPRPPVSRPKPPVEVFPGVFLYQSRKSKRLVDLSSKWRSLKTQAAASAPWANFPLMDHKTSTQSALLKQSHLSSPTEPGPHNKGDPTASISDPDSVPPSSSEKRDHPGLNSSSQPPEEEPTKISEMAEGLDVAPQSRGLEEGEMSEYSYEEAEVRPHLAEEAINWQRTFSVNPVDFELLRSDWNDLRCNVSGNLQLAENEVIDVISQFMERLNERNRGIYTLARIVNVEKRRDSARGNRYLVELLLMEGGKRLVRLSEYIYLLLHRSRFEEGIESREGTVPSSHRTPSKIPLPSGSSAQTHTTTPWSTSWAKPLLCQPIMLQWRHDVMVHFVVPVKNQARWVQQFISDMELLHRETKDENFSVIIVDFQSDDMDVEQALKESTVPRYEYLKREGNFERSSGLQMGVDTIEDSHSIVFLCDLHIHFPHNILESIRKHCVEGRLAFAPIVMRLDCGSSPLEPDGFWEVNGFGLFGIYKSDFDKIGGMNTEEFKDHWGGEDWELLDRVLQNGLEVERLRLRNFYHYFHSKRGMWNVPVKRASQG", "length": 1167 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFR8-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "uqcc5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRKSQNLKYMLSLVPGKKRFGVYRFLPVFFCIGGVMEWIMINVRIGRETFYDVYRRKQSERAYQQKTEEGLIMLTDSQAK", "length": 81 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9PUW9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r143", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PUZ0-1", "protein_name": "Apolipoprotein L 11b", "gene_name": "Apol11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWNEISEDIRKVECRTFEKVIDNATEDLITDLRSLITEDGAWNGFVEAVELSSEEGEALRDALKERLAQDPTDENDRPQREQQKERFLREFPQLKKKLEDHIRKLRDLADKFDQVHKDCTISNVVSTSASAASGVLALLGLVLSTVTAGASLALSASSVALGATSSVSSFTTTVVEDSMTLSYESEARNLIGASMNVLEEILSIMPKITCKFYNTVADLVKAFKTLKGQIQTIRRARSISRRGAQARNLTSTGRSSGQGVSQMTRGARIRAGVFTSVFLGWDVYDLVTKQRICMMGEKQSQVEHCGTWLASWRRTFRNLSRSTMLCSQTCLSDALP", "length": 337 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PV04-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "Eif4a3l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI", "length": 411 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVP9-1", "protein_name": "Predicted gene 4884", "gene_name": "Gm4884", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSENLQSSPFFGTESTLHPSLPLLSNSKQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMVVQMETSLGLPPSGQTYCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSQFLALPPAPSLEQPENKTMPEIKEGTKENQDTPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENEIGSSFDFKDITRFGADIQLPQLLNTLTDIDQDQSCENWRVTSGLFDQVRENKHKSFELLEGAPQAKFQHWDLVEGEGAVGVAGASDRAIDNMAKHPEGKAPKGPPSKNRRARKQEQERPSGPENKSKKTQELKQSRNRVKAEKEPSIPKTKRKRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKSEKKTGISSFRGLRTFTSNKDSGPGSVTTTVLNMPCESQGPPKSPGKVQSAESSVGKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPTAVYPVQHHSHSVQPTTLRPAQPPPASSSLIASAKPAPPISSSATGPNVTNPNQSSAVPQLATSRPVPYRASSHTSFQRELVSAARNKVPSPPRPVPYRASSNTSFQRELVSAARNKVPSPPKPQTQYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRRSQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM", "length": 694 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVW0-1", "protein_name": "Major urinary protein 8", "gene_name": "Mup8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCVGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKVHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNAMDLVPEHVLVLTRQIAASRPENEEWPEPPVLSGDFSPGLHHHPFLSIQHPQYKFCDLHSILSH", "length": 235 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVZ7-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKYFCLPRFSIISMLTGNGSFVTEFVLAGLTDRPELQLPLFYLFLIIYTVTVVGNLGLIILIGLNPHLYTPMYYFLFNLSFIDLCYSSVSSPKMLMNFVFEKNSISYEGCMTQLFFFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSPQVCSMLSFASYGMAFAGASAHTGCMLRLIFCNANVINFYLCDILPLLQLSCTSTYVNEVVVLIVVGINITVPSFTILISYVFILANILNIKSTQGRSKAFSTCSSHIMAISLFFGSGAFMYLNHSGSMNQGKISSVFYTNVVPMFNPLIYSLRNKDVKIALKKVMMRVHSRFIS", "length": 325 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW18-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r257", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW59-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b50", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALANGSFVTEFILLGLTDQPDLQMPLFLIFLIIYLITAFGNLTLIILIVLNSHLHTPMYFFLFNLSFIDLCYSSLITPKMLMNFVLEKNIISYMGCMTQFYFFGFFAISECYVLTAMAYDRYVAICNPLLYSVAMSPKMCSYFILGSYFMGFSGAMIHTGCVMRLTFCDGNTINHYFCDLLPLLQLSCTSTYVNEIELFIVTGKDIIVPTVIIFASYGFILSNILKIRSTSGRSKAFSTCSSHIIAVSMFFGSSAFMYLKPSSAVSMNEAKFSSIFYSIVVPMMNPLIYSLRNKDVKVGLKKTLSRMFSHNLISL", "length": 316 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXC3-1", "protein_name": "Cytochrome P450, family 2, subfamily c, polypeptide 69", "gene_name": "Cyp2c69", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPFVVLVLCLSFMLLLSLWRQRSARRNLPPGPTPLPIIGNYHLIDMKDIGQCLTNFSKTYGPVFTLYFGSQPIVVLHGYEAIKEALIDHGEVFSGRGSFPFFDKVSKGKGIGFSHGNVWKATRVFTVNTLRNLAMGKRTIENKVQEEAQWLMKELKKTNGSPCDPQFIIGCAPCNVICSIVFQNRFDYKDKDFLSLIGKVNECTEILSSPGCQIFNAVPILIDYCPGRHNKFFKNHTWIKSYLLEKIKEHEESLDVTNPRDFIDYFLIQRRQDKGIEHMEYTIEHLATLVTDLVFGGTETLSSTMRFALLLLMKHTHITAKVQEEIDNVIGRHRSPCMQDRKHMPYTNAMVHEVQRYVDLGPTSLVHEVTCDTKFRNYFIPKGTQVMTSLSSVLHDSTEFPNPEVFDPGHFLDDNGNFKKSDYFVPFSAGKRICVGESLARMELFLFLTTILQNFKLKPLVDPKDIDTTPKYSGFSKIPPKFQMCFIPVE", "length": 491 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXM9-1", "protein_name": "F-box and WD-40 domain protein 24", "gene_name": "Fbxw24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLSSFPMMEIFSYLDAYSLLQVAQVNKNWNALASNDFLWRKLCQERWLFCDMVTLQLLGKETWKQFFVYRTWQEHVKSRAIPEDFTYKEIPLECGVRGYAGYISGCALTRNGQGKSVVCMVSSKNKISTWDISESVITWVSPVQPASIKLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFRIPDLHLISTVNVFPCGFDKIDCSPQKKWVLLSQNHPCIYPKVFYMSSLLRTSEFSDPVSTVLEFSLCKRAFWTPRREDRITLMSRRGRPIVTRFETFDMKLEENGNKTIVKGDLVASFSLQDYNENPKWMGVSDKSVIVCSTGSSLLLFSMKGLHLQTFQYSPEMIVRLWVDPVHVIITCNDGSIDVYMWEERSLLLKMCYRLQNGRHLPPFGFIKNLLCDDVSIVQLMIDRQGPCFLMAYTLNICS", "length": 466 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q069-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r157", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCHFEVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q0V3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r68", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVAIIKENQTQSKMDFWNMGIKILFLSQTTTGILGNFSLIIYYVVNYIVHTLKPTDLILMHLMTSNALMVLSTGVLHTMAAFGLAHLLNDLGCRLILYIQRVGRSTSIGTICLLSIFQAITISHRVSCYKGQKIKSSKYIGYSISLLWVLHMFLNFILFVDIFIKRNRNNMTSDRDFKYYSIVERNEFSDSLYVALVVCPEIFSSVLITCSSGSMIGILYRHKQRVQHIRSFHVSSRNSPEWRATQNILVLVSTFLAFYTLSSVLQGCIALLNNPNWWLVNITRLTSLCFPTFAPCVLMSHYSFMPRFSLVWTWNKTS", "length": 319 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1C7-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A2", "gene_name": "Speer4a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWMGETREGRKDADLPSKSNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHNLEMENMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIHQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 252 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1N7-1", "protein_name": "Predicted gene 8126", "gene_name": "Gm8126", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNRNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKITQSINDTIEKYKEFIEDKDSYSFMHTYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEENRFCHESSKNIHPKY", "length": 198 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q328-1", "protein_name": "RIKEN cDNA 5430401F13 gene", "gene_name": "5430401F13Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSRILLVLLSIALLALTSAQRVNEDDGSALQEEDALEIGDSNQQHDDIHERLNEIKNHFQDQISQHGKEAIKSKKGKNGPRSRRSSDDDNLEVQDHQSGNEQAGGGQGGRGRSELKGQNGKGSQKGKKGKGGQQEQKGKGGQQKQKGKGGQKTKRGKGGQRSQQDNVQEVYQE", "length": 175 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q346-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSKLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q366-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4f2", "gene_name": "Speer4f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTMCVRLRRLFQRANVDGRETREGSMDAGLPCERNEGRRRWTWRMWMAHRQTSSPVPVTSNQFEKEEEELMEEIQLISQEKNGLRDYLNLTLGSKITRLNQSYEELKLKQKELMTLQHDLEMATMEAREENEELKKEINFYSNLHSRALMENNLIKKKLMTLQQESKEVQAEWASIQQHLDVNLSGKDEQENNSILDTQEHQVSETARELGLATDQEDSILQDELPPQEAPAEELSPQEAPAEELPPQEAPAEQLPPQEGPAEELPPQESPAEHHLQHPQSFSDESSYITYPEWE", "length": 295 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q3G0-1", "protein_name": "Zinc finger and SCAN domain containing 4B", "gene_name": "Zscan4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPIPDNAQMPVDTTQDRLLATGQENSENECNTSCNATEVNVGESCSGNEKDSLLITQKEQNHEHEEGNVVCQFPRGARRASQDTSSHHVDFPSALTPADVPMEEQPMDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKTDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQPISDPVLGKNHEANLPCESHQKRFHRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCITCQKIFKRVSDLRTHEIIHMSEKPFKCSTCEKSFSHKTNLKYHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 505 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q4E0-1", "protein_name": "RIKEN cDNA 5031410I06 gene", "gene_name": "5031410I06Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q501-1", "protein_name": "Predicted gene 2237", "gene_name": "Gm2237", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENVDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSPAESRTWH", "length": 211 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q5G7-1", "protein_name": "Oogenesin-1", "gene_name": "Oog1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPLECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVELL", "length": 496 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q6D7-1", "protein_name": "RIKEN cDNA 1700024B05 gene", "gene_name": "1700024B05Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESHDNPVSAGRTSSQNCNITNHMKNMNKLDDMKFYIRKINAELEELFRILDIDMNTDLNYRMNTEFTIIKSQHEKTMLDMEKMKQSISDSIDKYKEFIEDNDSYSIRHTHLLKECNQLKEKVRMLLNENRKLLVEQADQEASFGEEKSSVMRPARTYIPSAKQQQL", "length": 167 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q7M8-1", "protein_name": "Predicted gene 5796", "gene_name": "Gm5796", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQSGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8A4-1", "protein_name": "F-box and WD-40 domain protein 28", "gene_name": "Fbxw28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQIAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLSVCS", "length": 466 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8I6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDLVPKNPPTDLKCKLAHFFHMVARGTNMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVRYSCYSCWLFSVLNNAYIPMNVRGPKKSHNDSDSQGKRMCSISVVNVDMNYLQFSYDIIFIGIMVWTSVSMVIHLNRHHQRMHYIHNPNQSNRGHAETRAAHTILMLVVTFVSLYILNCICVLFHVSFVESRRWLRNVIEFLALSFPTISPLLLIFRDPRGPCSLYFNVGLEIHVTGKVITEEQ", "length": 310 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8L6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r132", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8T0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQTGLGVLANTVLLFFYVFIILGHRPKPTDLISCQLSFVHIMVVLIGGDILLADIFESLNIGNDFKCKTTFYLFRVMRGLSICITCLLSVFQAVTISPNTSVLAKFKQKVKKYMTHVFLCIWFFNLSFSTNQIFYVGGFTNVSETNQMQVTKSCSLLPMNYIIRGLIFTISISRDVFLVGVMLTTSVYMVIFLFRHQRQCKHLHSFSHPRESPEKRATQTIMLLVSFFVVLYWMDFIISFTSEMLRMYDPVILTLQKFMMYAYPTITPLVQISSDNRIIIMLKNIQSKCHPSFSLKDFFFFI", "length": 311 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8V7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r173", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALNKALKTTEEVALQIILLCQVGIAAVANILLLVHNLSPNFAGPQLRPKHVILAHITVGNLLIILLTGFPSNIIVFVPRNPLNDLNCKLEYFIRLVARSANMCTTCVLSTYQFIVLVPGKWSRMILRGNTSTFVHYSCNSCWIISVLNNVYIPIKISGPWNTDNDTDLNSKWVCSMSGFELVMVFLRFVHDTMFISIMVWTSVSMMLLLYRHHQSLKHIHRSNGSLGLQPEARAAYTILMLVVTFVCFYLLDCMCIFFHISFVHFRVWLRHVNEILAASFPTLSPLMLIFRGPKKISAKGINTENAFINSH", "length": 313 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9N3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r152", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFASKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFGSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAETRATHTILMLVVTFVRFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QAN3-1", "protein_name": "Predicted gene 1979", "gene_name": "Gm1979", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPPESNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QD93-1", "protein_name": "Granzyme K", "gene_name": "gzma", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDICRNLIVFHFLVFTFFKVTVCSDVSIVGGKDVKKALSWMVSIQVNQNHKCGGILIHKEWVLTAAHCKEDSYSSVTVLIGSLSLSKGSQRIAIHNYEIPETFNKKTKKDDIMLIRLSKKVKAKPYKIPKKEKDVQPGTKCVVRGWGTTDYKGKQASDKLQMLEVLVVDRVQCNRYYNRNPVITKDMLCAGNTQQHRGTCLGDSGGPLECEKNLVGVLSGSHGCGDPKKPTVYTLLSKRHITWINKILKQQFNSTRF", "length": 257 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QLQ1-1", "protein_name": "Defensin, alpha, 35", "gene_name": "Defa35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHDELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LPT0-1", "protein_name": "Gap junction protein", "gene_name": "Gjc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCCSFLRQLLARESQHSTPVGRFLLPVLVGFRLLILVSSGPGVFGNDENEFMCHLGQPGCKTICYDVFRPLSPLRFWAFQVILMAVPSAIYVAFTLYHVIGYWEVPGRNKEQEAQICKGGRCKDVSGAMSLKLLWAYVAHLGVRLVLEGAALGVQYHLYGFKMPSTFICREDPCIGSTTCFQSHPSEKTILLNTMFGISGACLLFIFLELVLLGLGRVWKTYRHKLPLFKNLSTSERSVRHKDTTDDLSVVETKEPF", "length": 257 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LT33-1", "protein_name": "Cytochrome P450", "gene_name": "Cyp2b14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVFLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFIDTYLLHMEKEKSNHHTEFHHQNLVISVLSLFFAGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVISSHRLPTLDDRIKMPYTDAVIHEIQRFADLAPIGLPHRVTKDTMFRGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDANGTLKKSEAFLPFSTGKRTCLGEGIARNELFIFFTALLQNFSLASPVAPEDIDLTPINSGAGKIPSPYQINFLSRCVG", "length": 495 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LYQ4-1", "protein_name": "Alpha-1-B glycoprotein like 1", "gene_name": "A1bgl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLLVLLEPLASLTLTCKVCEPSKDLHRILHLSSMETACTLSLALPPTLPSASLIFSASGVHTLILLRVRLNHSLILLSLIHTGPLPRPWLSANPVPWITPGLRTFLLCQGTVRDVVFMLRREGDDGNKEKEQGIFQVHEPGNYSCNYYTNTEYTPSKPSGTVTIKEYVIPPPPMLTSLESSTVDEPEMTQMSLLCVAPLSDVEFQLRQGEREMKVLIVSTSPERASFYLKLSDMGDHSPFTCRYRLNRMTAWSEDSKPVQLMWSDETLPEPVLTVEPSPHQSFEPGSTVQFRCTAPKAGLRSEAGLRFGLHLEDLYDHRLLQTQKSSGNETVFQLRNVSATDSASYSCIYTELTPPYSGSAPSDFVILRVNGPPPPPKLQALWTGKVFAGHDVVLRCQSDVTGVIVELLRDGKFVPYRILRVLNNYSDLGLHSVGPQHTGNYTCRYTSWLPEPVQSEPSNPVELLVEGMASGVVVVGFCLLIFPGLCILVNCAI", "length": 495 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M6N1-1", "protein_name": "Zinc finger protein 945 like 1", "gene_name": "Zfp945l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTASLVNVSKCLLTFRDVAVEFSMEEWECLNYSQKTLYRDVMMENYNNLLFVENHCKYKKVLDQDPNSIVHNVNIYEKAYECNELVKMTHESSQGTPFKTKHKDASLQISTLNRQKIGNTRDEPCKFKDCINFLNVFVIRQNQRIYIGEKEPTTIEYENHYNSKHEVMLKQSNSTGNKPHIFRKYGQCFKIYSSFSRYQNDHTSEKFYKCIKCRKSFLHLSQLKVHYKIHYRKYPCKCTACSKCFYHTFGFKRHYSIHPEVNTYKSSDCDKSFIYYSSLRKHQKIFGGERHYECNEGLRSLYTVFQPVYYYIPHIGEKAYKCSECEKCFTRKYHLTVHQRIHTGEKPYKCGECDKCFTRKYHLTDHQRIHTGEKPYKCSECKKCFTRKYHLTDHQRIHTVEKPYKCSECGMSFMKKYHLRSHQSIHTGEKPYNCSECDKGFTYKGHLRRHQKIHTGEKPYKCSECAKCFTENSKLRRHQRIHTGENLYKCSECDRCFIENNKLRSHQKVHIGEKPYKYSEYDKCLTQKGSLRSHQLIHTGEKPY", "length": 544 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M7A9-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "AABR07026048.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRLAHRPIQWRNFLSQDSLDQDTMRKKTILSNQTVDIPENVDITLKGRTAIVEGPRGTLRRDFNHINVELSLLGKKEKRLRVDKWWGNGKELATVRTICSHVQNVIKGVTLGFCYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVWMRTNVACSVSQAQKDELILEGNDIELVSNSAALIQQGTTVKNKDISKFLDGIYVSEKGTVQQADE", "length": 219 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M9J5-1", "protein_name": "Uncharacterized protein", "gene_name": "Esp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ITFLPVTLFLIILLWPSMITEGRVLTQNQKELSISADHNKNHKSDLDKIEFQGQPNIQKAVEMTICASDKDQTLLEDQANANQDKQLYKDSHLLCGRSLDHIVK", "length": 104 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QDL3-1", "protein_name": "Novel nacht domain containing protein", "gene_name": "LOC560232", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKHTPGDLDLSTGCSSVHQNRAEAEPSCVSMKSDVSMDPPTNFKSGNTGPAVSSRKRKRAEAEPSCVSMKSDASMDPPLKFKSKNTQPAVSVDRDDQSGDLLQDSLQPEHDELQRVKEQHKTTMKNKHERLFEGINHGETQTLLNRIYTQLYIIEGESEGVNEEHEVIQMEKRARTKPSQHTPVYCNDIFKASAGAGHEVKIKKEKAQIKTVLTKGIAGIGKTVSVQKFILDWAEGKANQDVDFMFVLPFRELNLIRDHQYSLHRLLLDFHPELEDLEPKIYEQCRVVFIFDGLDESRITLNFSDEEKVCAVTESSSVAVLMWSLLKGDLLPSALIWITSRPAAAHQIPSRYIKRLTEIQGFTEPQKEEYFRKRISDEHQASRIISHIRRARSLQIMCHIPVFCWISSTVLQKLLEEDVSAEIPQTLTEMYIHFLLIQINMRKQKYEERDPEKLLQSNRGVILKLAEVAFRQLMKGNVMFYEEDLIESGIDVTDALVYSGICTEIFKEESVIQQRKVYSFIHLSFQEFLAAFFVFYCHLTKKRELLELILGYSYDQYLQSSSEKSLYDLLSSAVDEAVRSSNGHLDLFLRFLLGVSLESNQRLFQDLLTHTEESSESIRRITQYIKDQIKSDDYFKRAAERFINLFLCLLEVKDQTLAREIQEFVKSDKHSEEELSPAHCSTISYMIEMSEEPLDEFELQKFNTSAEGRLRLTTAVRNCRRAL", "length": 725 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QGM0-1", "protein_name": "Galectin", "gene_name": "lgals1l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTVLIQNMAFKVGQTLTLTGVPKPESPEFTIDIGNSSEDIALHINPRFDAHGDQCIIVCNTFQNDCWCEEHRDENFPFVQGEEFQIKITFTNEEFLVTLPDGSEINFPNRQGSEKYKYMNFTGQARIQGIEIK", "length": 134 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QMQ9-1", "protein_name": "Uncharacterized protein LOC541480", "gene_name": "si:ch1073-398c20.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADIKQESDDIRIAEVFTLKQEDPEEQTDLLPLRKEFQGLDNVKEEEALVEEHQDITPAEKRITCSETENTTQKASEKTGSRSSFTCEQCGRDFAKQGTLNNHMRIHTGEKSFTCQQCGKGFTQKRTLRNHIRFHIEAESLSCQQCGESFTQKQDLTDHMRVHTGEKSFVCDQCGKVFLRKDGLEKHLKNHHKEKPHVCPCGKSFTDKTKLEEHTKTHTGEKPHTCDKCDECFSGKYDLIRHMRFHSAETPYICQQCGKSFALKRVLMTHVKIHTRDRPFLCKQCGKCFYRKDNFNRHVRVHTGEKPYACSECGKSFSERFQFNEHSRTHSGVKRFSCEQCGRGFNRKTELKRHMRVHTGEKPYMCPQCGKTYAFKTGFDIHMLHHNAEMPYICPQCGERFSVKQRFDVHMKIHAGNSDK", "length": 420 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1Q6-1", "protein_name": "Uncharacterized protein LOC641576", "gene_name": "zgc:152710", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLIWTQFGVKHKNVKCKVRVIHGEEGSWSSEEVREEPEVSSPPPSPECVDYYSVLGVSNDSNEEEIRKAYKRLALRYHPDKNSDADAEDKFKQIAQAYDVLTDPEKRNIYDQQGLTKGGVAPTCNKTDPSHNSKADAHSWHMFFNFDLDSDDDLFNPFTRNPLPHLSRHHGNKGGLKPAGDAEVHDLSVSLEDILMGVTKRVKLTRLRQTDKHTLKPEERVFDVEVKKGWKEGTRITFPNEGHQMLGHAPNDLAFVIKEKKHAHFRRDGSHIVYTCTITLREALCGCTVNVPTLDGQMKPLPCSDVIKPSSVRRLIGEGLPRAKNPAQRGDLLVEFQVVFPDRIPPSSKEIIKHSLGQC", "length": 360 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RA39-5", "protein_name": "[F-actin]-monooxygenase mical2b", "gene_name": "mical2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGETEEERTSQAGQLFENFIQATTCKGTLQAFSVLCRQLELNPSDHRGFYSSLKTAVTFWKAKGLWGKLDKRAGHKEYSKGRACADTRCLIIGGGPCGFRTAIELALLGAKVVVIEKRDTFSRNNVLHLWPYTIHDLRNLGAKKFYGKFCAGSIDHISIRQLQLMLLKIALIVGVEVHVNVEFVKLLEPPEDQSTDGQGWRAEIRPADNPVSDYEFDVIIGADGRRSTLDGFRRKEFRGKLAIAITANFVNRNTTAEAKVEEISGVAFIFNQKFFLELKEETGIDLENIVYYKDNTHYFVMTAKKQSLLDKGVIINDYIETERLLAFDNVNQEALLSYAREAADFGTNYQLPSLDYAINHYGQPDVAMFDFTCMYASENAALVREKSHRQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMIKGWAQGKEPLDLLSERESIYRLLPQTTAENISKNFEQYTIDPATRYPNLNSSCVRPHQVRHLFISGEQDLSSLERSGQTRRSVSISRRESEVRPGRLLLWCQNQTQDYRGVNVTDLNTSWRSGLALCALIHRQRPELIDFDSLNEADCAKNNQLAFDVAEREFGIQPVTTGKEMDAERGPDKLIMVLYLSKFYEMFHKSTQSVTGLPKEIDANNGDCSSKTANSLYNSINHARKRIPKLDKKLEESDVNRKRKKASSHHEELMSCQTAPPAGEREEQKENKVRSMATQLLARFEENAPSCALRRQSDSESDSDADRPVSLDLTENPRFARPKIEPTHPSTTPDKAKWQPSPYLRLLESNTRSETLHTEHYVESQSSHRLTEIQSECQYSSVSSAYKSSERRPRSPLIPFTPTLSPMMHCLQQLEEQVIQQRKREPLNRKSIKERAQKLSSLFTGNPAQPQTDESSPAVSPSSPPQTIPESSTLSCLLSPAPSLTHKQCSEASETHLKADKHTEIRRVERLDPSKQRTVGKVSSAIGVKAATLAILYETDHRPNNPITLSLTEARRCAESGLVSVRKEFSASLGGSDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQRKTSTRHRRGEIQDGGIRSSSITISNHTSTDGTRGQPSGGEFDSSTQQDLQTLPDSKEIISVSEVKDSSKKADPADSAPACPDSPLQKVKRSTAKGEITNKNILWKKKIRSTLPLVLMKKFHRGKPEDKTEVLAEEDGNSDFEEIHESLSSKKPSNPSTDSNCLPTKDNSSTPLDEIPKIPLYRTHVLPEYPKPSSSSPEPIVTSISSDPISFSPKKKLTLSLSEKEKLLNWDLTNPGKSGAEEQQQQHVKPSISLQHDHPEPTHPQPEPAPPLFGFQQWANNLRKSFSKGSNPVVLRRNRPMKARPLSEGSFNVGAVFQDEERCGSLVDEGEARPRTESEIASLLEQVALGSKTSRGTKDDMASLPPRKLNFFSSLRIKRVEGAEQSRGEGQKDILSILSRFRNKASAQQQQQQKSNSSSEDEQEPKLTHSGALQKKKEKIAIRQTKSDELKRLHRAQVIQRQLEEVEEKQRSLEEKGVALEKVLRGENGDDGSTDEAALLQTWFKLVLEKNKLSRYESELMIFAQELELEDTQSRLQQDLRRRMATEDCEKSASELVEEQNILVEIMKVVEKRDKLVSLLEEQRLKEKAEDRDLESLILSRGYQFHWT", "length": 1679 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RXL1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152495", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFTICNDSHSDFILLGFSDKPYLEKILFWVVLIFYCLTIIGNLVIILVSLKDPKLHIPMYYFLSNLSLLDLCFTSSCVPQMLVNFGGPEKTISYIGCAIQLYVFLWLGATECVLLVVMAVDRYVAVCHPLQYTTIMHPKLCLELAILAWGTGLIQSLTQSPATLQLPFCSNRRLYDIVCEVPALIQVSSADTIYNEIQMSIASIILLVVPLVIILSSYGAITKALLRVKSTEGQKKAFGTCTSHLLVVFLFYGTVTAVYLQPKSHYAHEQGKFLTLFYTVITPTLNPLIYTLRNKEVKGALIRLGKKTWDDLCWTIA", "length": 317 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD0-1", "protein_name": "Transcription elongation factor A like 3", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRQVKHLRSGSLPTPGLSVTSPSPTARPATPRTACLFPALCKTRKGEGTCPESLQDKKRRKNLNMEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 264 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "LLVVVLVTYLLTLVGNTVIILIASIDPNLKTPMYFFLTHLSLVDICLTTSIVPQLLWNLRGPAKTITTLGCAVQLYVSLALGSTECVLLAVMAFDRHAAICKPLHYAAVMNPRLCQALAGVAWLSGVGNALIQSTVTLWLPRCGHRRLHHFFCEVPSMIKLACVDIHTNEVQLFIASLVLLLLPLALILTSYGHIVKAVTRIKSVQAWRKALGTCGSHVMVVSLFYGTITAVYIQPNSSYAHTSGKFISLIYTVLTPTLNPLIYTLRNKDVKGAMRRLFRRDLGS", "length": 285 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S4M2-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSLVILEKFQHILRVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVEHVITIMQNPGQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLHEDVERLKKIRAHRGLRHFWGLRVGGQHTKTTGRRGHTVGVSKKK", "length": 152 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S6C0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNCLTPHTSEDLLVPASATHLGGRRRRARSRERRPRDQVPGWAPAAPLVQEEQVRVPQRISQIQCLPKGVYKRDGSQEKMEQEECAICTLDFVCGDPIRSLPCKHFYHLGCIDEWLTRSFTCPYCRGPADGPQPSSRDTP", "length": 141 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7I2-1", "protein_name": "Beta-defensin", "gene_name": "DEFB125", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MNLLLTFMICGLLTLVTKAGWNVERCWSYNIGHCRRRCLHLERYKHLCMNKRACCIPLSSDDPYTQWPLPPEDQTVGMKTPYFRPVSPGSELDDQITITITVDQESTGTEQDIEGTAISFQASTPIPENIEDTKFSDKANTLNLHKL", "length": 147 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBB9-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MHALPAFESFLLFKDEKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEALLNVITDLISKLSLLEERLRVAIKDKQEGIECWTGRGPAWPGPALTLALLQAPCG", "length": 140 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBV4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100154723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESENITVVTEFIFVGLTQSRNIQLLVFVLVFIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNPRACYALSLAQWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPGIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKKLLINN", "length": 305 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SJ79-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259717", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTKGTEFILLGFAGQHKSWPVLFIVFLVTYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLEEKVDLCYATAITPKMLQNFVWTEHSISFIGCMVQLLTYGAFATSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLVIGSYFMGFLNASVNTSFTFQLNFCKSNKINHFFCDAPPILALSCSSIYFSIMLLAAFVGFNLTCTVSVVIFSYVFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 310 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SLL7-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSISKFLLLGLPIQPEHQGMFFVLFLVMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFLACIDNLLLAVMAYDRYVAICHPLHYAIIMREELCLCLLVLSWLLSCAYALTHTLLLAQLSFCADIIPHFFCDLDALLKLSCSDTSLSELVTFTAGAAVVIFPFIGILVSYGHIGLSILRVPSTKGICKALSTCGSHLSVVSLFYRTSMAVYLSSSGQFHDKDIIVSVMYTVVTPMLNPFIYSLRNRDMTLALGILFRNINIFSK", "length": 311 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SMZ6-1", "protein_name": "10 kDa heat shock protein, mitochondrial", "gene_name": "HSPE1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 102 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SRB7-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVVQKSGEKKRGRSAINEVVTREHTTSIHKRIHGVGSKKRAPRALKEIRKFAMTEMGTPDVRNDTRLNKAVWAKGIRNVPRRICAPLSRKRNEDEDSPNKLYPLVTCVPVTTFKNLQTVNEDEN", "length": 125 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SUB9-1", "protein_name": "Multifunctional fusion protein", "gene_name": "IL1B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATVPEPAKEVMANNGDNNNDLLFEADGPKEMKCRTQNLDLSPLGDGSIQLQISHQLCNESSRPMVSVIVAKEKPMNPSSQVVCDDDPKSIFSSVFEEEPIVLEKHANGFLCDATPVQSVDCKLQDKDEKALVLAGPHELKALHLLTGDLKREVVFCMSFVQGDDSDDKIPVTLGIKGKNLYLSCVMKDDTPTLQLEDVDPKSYPKRDMEKRFVFYKTEIKNRVEFESALYPNWYISTSQAEQKPVFLGNSKGRQDITDFTMEVLSP", "length": 267 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F2Z5L2-1", "protein_name": "Histone H2A", "gene_name": "H2AC18", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4IWB9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 28", "gene_name": "CYP705A28", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIMGRSCSEKNGEAERVRGLVIESLALSPKIFLGMIFHKPLKKLGISLFQKDIKSVSPKFDELLEKFLVEHEEKMEEDHYKANDMMDLLLEAMEMRMQNVNLCIKRVSNTKARKPPILFRYGKYSNNSLLLQELLVAGTDTSALATQWTMAELINNPTILERLREEIESVVGNTRLIQETDLSNLPYLQSVVKEGLRLHPPASISVRMSQERCELGGFYIPEKTLLVVNTYAIMRDPNFWEDPEEFKPERFITSSRSEQEDEMREEVLKYIPFSAGRRGCPGSNLAYVSLGIAIGVMVQCFDWRIKGEKVNMSETAGTIMLAMAQPLKCTPVPRTLNLLPSSLHIPSS", "length": 348 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J311-1", "protein_name": "Zinc finger (C2H2 type) family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLDGVELLLDLREMVSQSGFEKSTTCSGVIALRSNLQSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDSLKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISCSKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERIWGLKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASISNLPLGDGFMDLELKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHRWKLVPKPEYIEDDSSLLDSSEAKKIVSKPSSFEHAQEEKILQCVEPKLEFHEQLAHSGFDKFDTCSKIRFSALPSPPEAKKIVSQPPSFEVSVDEKILYRAEPKLNFSEPLAHSCFDNSSSYRSIICGKSFVCSQALGGHQTLHRSIKGQLAGTEDGNSLSVTDSEASKIVAQPSSYKSQGI", "length": 650 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLV4-1", "protein_name": "Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein", "gene_name": "DHYPRP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASTTIILFLSFSIIPLLTIVRADNHSVYCPPPPPCICICNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIIRNVSDLDAVTCFCKSVGAPRFSLSPNFGIFFKVCGRRIPQGFSCPGPSPTISPPPLPPQTLKPPPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIVRNVSDLDAVTCFCKSVGARRFSLSPNFGIFFKVCGRRIPQGFSCP", "length": 375 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K5R6-1", "protein_name": "Cell division cycle 20.6, cofactor of APC complex", "gene_name": "CDC20-6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMKSIALALCLTHHSPMVLSIVDYGDSQEKTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSSYVETEKVEEEDRDDFLKQVWFLTDNLVFFFVDIEEYIVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPFAHVNHIR", "length": 428 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F5H284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4D", "gene_name": "PPIAL4D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F6R3J9-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1G", "gene_name": "Speer1g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNKKNKEVEIDWALIEKYLVDLNLNGQTGADQQP", "length": 157 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6X687-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1A", "gene_name": "Speer1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKQSSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMPVTQNQKNKEVEIDWALIEKYLVDLNLNGRTGADQQP", "length": 157 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6YNI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRCRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILVGLQDYQDNKADVILKYNLDEARSLKAYGELQEHAKINETDTFGPGDDDEIVFDDTGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7AMQ8-1", "protein_name": "Exocrine gland secreted peptide 8", "gene_name": "Esp8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKVSAMTSFPVMLFLIILLLPSICSEERTQADPTISADNKKNFKTVVDLTDCQCERNFIESLESTLPASNQDQTLFENMTNQHKLNLSKMLSVLSKCCTQKQQVDTVHFRRMPHRIQSTKQNNYKKQVLYPMQEFMNLTRDVLVSRYV", "length": 149 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7C9P2-1", "protein_name": "F-box and WD-40 domain protein 25", "gene_name": "Fbxw25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSLPMLKILSYLDAYNLLQAAQVNKNWNALASSDVLWRKLCQRRWHYCDMVTLQLQGKETWKQFFIYRIWQEHAKTRAKPEDFTYKEIPVECGFYGYACYISGHGLTRNGQGKSVICMVSSKNTISTWDIHKSVITWVSPVQPASINLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLVGDTLGNLYIFRIPDLHLISTVNVFPYGFDEIDCSPQKKWVLLSKNYPHILPKVFYMSSLLRTSEFSAPVSTILEFSLCQGAFWTPRREDRITLMSRSGFPQITKFETFDMKLEGIGNKVAVQGKLIASFFLPYYEESPNWIGVSDKDVIVCSTHFFLLLFTINGLHLQTFQYCPETIVRLCVDPVHVIVTCNNGSLDVYAWEERSLLLRKCYRLQNKRPLPLYGFINNLLCDDVSIVQLMRDGHGPYSLIAYALNICS", "length": 466 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7ELE5-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "gene_name": "Ndufs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RRTVVYTARARSQEKSGSEPLSLWFRFPLVSIWALDQNRNSLEDGPQRLSEGRGQDGGAGGSWLALCTDPGSAHRHSGSAAQSPPECGSHWEPEQSAVSKAGAGAVVPKPSHLPRSRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR", "length": 271 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7F947-1", "protein_name": "Beta-defensin-like domain-containing protein", "gene_name": "Spag11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLSQRPPNVFRHVVDFLKKNQTHITQACSGNSGGRKASSSDLCGCALCLEAPSPHSQLSYKRACSSCPPTRGSSVPAVPSTAMKQRLLPSFVNLLLAALLLPGKAETWLRSWTQALSAVVTLGSSSASSINHLVTEPPSSPQDEFPAQGGNGSGLLHHRVKRFPPRTPPYHEPGPNYQIVNCKKNEGFCQKYCNFMETQVGYCSKKKEACCLHPF", "length": 216 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7FNC4-1", "protein_name": "Interleukin 36, gamma", "gene_name": "Il36g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSKYPHSPCTASGKETPDLGQVSDVDQQVWIFRDQALVTVPRSHTVTPVTVTVLPCKYPESLEQGKGTPIYLGIQNPDKCLFCKEVNGHPTLLLKEEKILNLYHHPEPMKPFLFYHTLTGATSTFESVVFPGSFIASSKIGKPIFLTSKKGEHYNIHFSLDII", "length": 164 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VPX6-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A1", "gene_name": "Speer4a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVNGRETREGRKDANLPPESNEGRRRWTWRMWMAHRQTTSSVPVTSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHNLEMENMEARENKQEFKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQERLVELNLSCKDEQEKTSNLETQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHTQNPPSSSDESSSDESSYSTCPAWE", "length": 267 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F8VQM2-1", "protein_name": "C-C motif chemokine ligand 26", "gene_name": "Ccl26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFFDLGLLVLLAIFLSVQLGVATCGSSIAMSCCPNFSYYVIPWSWVYSYKFTDKSCTSDGVIFFTKTGKQFCVQPGAKWVQRFISLVNTRNHL", "length": 93 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3GSG1-1", "protein_name": "Ferritin", "gene_name": "LOC100767129", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGFLRKSHRRQRHRCPLRVSRATVAYPLVFMTPPIISPPSQVRQNYHFDCKTAVNNHVQLQLHNSSVYLAMAFYFDSEDVAQKNLASFFLNKSHECTAQAEMFLELQNQRGGRISLGSIREADRNNWLGGLQAMECALQLELSTNQSLVALHQLASSKSDAHLCSFLKNHFLTKQVEVLKEISGYVTKLRQMGSPDDGIAEYLFGKLTLDDNKGK", "length": 215 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3GWA3-1", "protein_name": "60S ribosomal protein L18a", "gene_name": "LOC100764432", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKASGTLREYKVVGRCLLTPKCHTPPLYLMRIFALNHVVAKSRFWSQLKKMKSSGEIVHCGEVRPEVPLQVKNFAIWLHYDSRNGTYNMCREYWDLTVTQCYRDMGAQHCARTHCIHIMKVEEIASGKCQRPAVKQFHDSKIKFLLPHRVLRCQHKPHFTTKRLNTFF", "length": 168 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H156-1", "protein_name": "Prefoldin subunit 4", "gene_name": "LOC100773780", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVATMKKAAAEDVNVTFEDQQKINKFARDTSRITEQKEIEVKKNHLQNLEDTFNDIMLADGDCFMTQYLIRDVLISHSQEEAQEMLEEAKKTLQEEIDALESRVGAIQWVLANLKVQLYTKFGSNINLGVDES", "length": 133 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H2T6-1", "protein_name": "Histone H4", "gene_name": "LOC100757199", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H8X2-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase gamma", "gene_name": "Agpat3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGLLAYLKTQFVVHLLIGFVFVVSGLVINFTQLCTLALWPISKQLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDIVKEGLQCLSDYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLPRTKGFTTTVQCLRGTVAAIYDVTLNFRGSKNPSLLGILYGKKYEADMCVRRFPLEDIPADENDAAQWLHKLYQEKDALQEMYKQKGVFPGEPIKPARRPWTLLNFLCWATILLSPLISFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE", "length": 376 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HAB3-1", "protein_name": "40S ribosomal protein S15", "gene_name": "LOC100759804", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVEQKKKRTFRKFTYCGVDLDQLLDMSCEQLMQLCSTRQRLLLNCSLWRKQHSLLKSLRKAKKKVPPMEKPEVGKTHLRDMIILPEMAGSMVDVYNGKTFNQVEIKPKMIGHYLGEFSITYKPVKHGGPGVGATHSSRFIPLK", "length": 145 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDI6-1", "protein_name": "Lipid transferase CIDEB", "gene_name": "Cideb", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEYLSALNPNGLLRSVSTMGSELGRRVWNSGPPPQRPFRVCDHKRTVRKGLTAATRQELLDKVLETLLLSGVLTLVLEEDGTAVESEDFFQMLEDDTCLMALERGQSWSPRSGMLSYGLGREKPKHSQDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGVGPKKVLRELLRWTSSLLQGLGHMLLGISSTLRHVVEGAERWQWHKQNHLRS", "length": 219 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDS5-1", "protein_name": "Histone H3", "gene_name": "LOC100773314", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HGI3-1", "protein_name": "PHD finger protein 6", "gene_name": "Phf6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSSIEQKKGSTRQRKCGFCKSNRDKECGQLLVSENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEETFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDSRSTSSHGTDEMESSSYRDRSPHRSSPNDTRPKCGFCHVGEEETEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN", "length": 364 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HJW3-1", "protein_name": "Calcium homeostasis modulator protein 6-like", "gene_name": "LOC100774768", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKFKAVLDLQSKHRSALGYGLVTLLTAGGEKIFSEVVFQCPCSATWNLPYGLVFLLVPALALFLLGYALRTRTWRLLTGCCSWSASAQSSSGLQRVFVCAQISAAAALPPLTWVAVALLGGSFYQCAVSGSEAMARHLCKGRDPSCAAKLPQVPCKKQEAEMQDILSQLKAQSQVLGWILIAAIIILLLVVKSVTRCLSPVSYLQLKFWEIYLEKERQILQGEAMEHATQLAKENVRCFFDCTNPKDCSTPSSKAWQQISALYTFNPKNHFYSMLHKYVNRKDMSGSLRSVEGDAVVPVLGFVDASGMATTHGV", "length": 315 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQ40-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "LOC100767578", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLGSSSDSAPDCWDQVDMEVPGSAPSGDGFTSASTAAAEAAEAEAQRQHLSMAFSSQLNIHAKPFVPRVSAAEFVQSFLPGSAQPPAPTTSSSDETCTGAGDPQGKRLGWGAPVEPSKDGPLMSWEGSNSAVTMELSEPVVENGEVEMALEESWELKEVSEAKPGGSLGDSGPPEESGKEMMEEKEVIRKSKSMAIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD", "length": 631 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQN5-1", "protein_name": "Transcription factor 19 isoform X1", "gene_name": "Tcf19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPCFQLLRIGGGRGGDLYTFHPPSRSGCTYRLGCRADLCDVALRPQQEPGLISGVHALLHAELQGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGQAGTSSSEFYFMFQQVRVKPQDFAAITVPRSRGEAGTGFQPMVPSQGAPQRPLSTLSSAPKATLILNSIGSLSKLQPQPLTFSRGGGRPQSLAVPTQPGEVGASPPAPPTRNRRKSVHRVLAELDDENETSLSPLSVLMEPRKKLRLEKAALVSSGRD", "length": 266 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HWQ5-1", "protein_name": "Zinc finger protein 219", "gene_name": "Znf219", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGSRPRILVGHLEPSPPAFDGELDLQHYSNGPGVSTGSPGMGAVGWSETRAGERRFPCPVCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLLLELEERALLREAQLGRARSSGGMQATPATEGLARPQVPSSSAFPCPFCKGKFRTSAERERHLHILHRPWKCSLCSFGSSQEEELLHHSLTAHGASERPLAATSTPEPQPPPQPEPRSALEPEPEPEPRPEPEHEANPAPTPAPPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHTSKLGPLRAPGPGSTPARAPQPPDMSLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSVRAGEVRPNGEGADPGAGRSYGGGFRPLPSALPNRARRHRTEEPEEEEEVVEAEEESWARGRSLGTLTSLHPHPGEGSGQSAPAVGAQARPTGTQEENGLLVGGARSEAGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSSAGPGPPPEPPPPSPRGAASLQPQSGAKPTQASATWVEGTASTRPSSSGTGAGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGSGGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRQPRADTSPPYVRAPSGETPPSPPLEEEGSPGLSRSGEAGLGGQER", "length": 725 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I071-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "LOC100753244", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKIKARDLRGKKEELLKQLDDLKVELSQLRVAKVTGSAASKLSKIRVVQKSIVRVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMHRQLTKHEEKLKTKKQQRKERLYPLRKYAFKA", "length": 122 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I1Z3-1", "protein_name": "DNA damage-inducible transcript 4 protein", "gene_name": "Ddit4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSLWDRFSSSSSSSSSSSSGTPATDRPPRSAWGSAAREEGLDRCASLESSDCESLDSSNSGFGPEEDSSYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVAQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLLSSANSSLVPGYSQSLTLSTGFRVIKKKLYSSEQLLIEEC", "length": 231 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IAH8-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "LOC100755128", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASNNTASIAQARKLVEQLKMEANIDRIKLSKAAADLMACCAAHAKEDPLLTPVPASENPFREKSFCTIL", "length": 70 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IG76-1", "protein_name": "Olfactory receptor 7E24 isoform X2", "gene_name": "LOC100765597", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYILALFGNLLIILTVSSDSHLHTPMYFFLSNLSMIDIGYISTTVPRVIVDIQTHCPVISYVGCLTQMSLIIIFACMDDMLLSVMAYDRFVAICHPLYYQVIMNPSSCGVLLLGSFLLSLVNLLLHYVAVLSFSNCEDIFEISNFFCGPSELFKLACFDTFTTNIVRYCAGALFGLLPISGIIFSYFKIVSSIMRSSSSSNGKWKTFSTCGSHLSIVCLFYGTALGMYFSSSLSLSPKTNAVASVMYTVVTPMLNPFIYSLRNKDIKTALRKILSRTF", "length": 278 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IGD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100770882", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGANSSSLTPEFFVLNGIPGLEDAHVWISLPFCFMYMIAVVGNCGLMYLIGHEEALHRPMYYFLTLLSFTDITLCTTTVPNTLCIFWFNLKKIGFKACLAQMFFVHTFTATESGMLMLMALDRYVAICYPLRYGTILTNPVIAKASLATFLRSVAFILPFTFLTKRLPYCRGNTIPHAYCDHMSVAKISCGNVKVNAIYGLLVALVVCAFDIFCITVSYTMILRAVMNLSSADARHKAFSTCTSHICAIVITYVPAFFNFFTHRFGGHTIPHHIHIIVANLYLLLPATMNPIVYGVKTKQIRESVIKFFSGDKSGITEIKGLQNK", "length": 326 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3INQ1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100763177", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFCNTSTPGHSTFLLTGFPGLEASHHWVSIPINLICVVSILGNSIILFLIRTDPALHEPMYIFLSMLAASDLGLCASTFPTMVRLFWLGIRELPFDLCAAQMFFIHAFTYVESGVLLAMAFDRFIAIRDPLHYATILPHSAVAKVGAAVLIRAILLNLPGPILLRRLLFPQVSVLSHCYCLHCDLVGLACSDTRINSLVGLVSILLSLGLDSSLIMLSYVLILRTVLSIASPGERLKALNTCVSHLCIVLIFYLPKLGLSVLHRVEKHSYPALAVLMANLHFLVPPFMNPVVYCIKSKQIRQGFLKRFQQKRVDVS", "length": 316 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MYE2-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFVKVVKNKAYFKRYQVKFRRRQEGKTDYYARKRLVIQDKNKYNTPKYRMIICVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAVAYCTGLLLACRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGALTCYLDAGLARTTTGNKFFGALKGAVDGGLSIPHSTKQFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLTEDEDAYKKQFSQYIKNNVTPDMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLGQENDRVAQKKASFLRAQERAAES", "length": 295 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3MZM9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC107131211", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELRRRLLIIVIGTLITGYMVTCTCLLHYRCDSKEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3UW31-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r176", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVTLQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQFVTLAPGTWGRVMLPGRAPNFLRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDSNSKSKWVCSTSGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFVDSRVWLRRVKEILSVSFPTFSPLLLIFRDPKDPCSLLFGC", "length": 304 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3UY92-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r158", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQLLLLCQFGVGTVAKVFLFVRNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVARSTNLCSTCVLSFHQFVTLVPLNRGKGKLVLRASVTNMASYSSYSCWFFSVLSNIHIPIKVSGPQIKDNNTDSNRKLFCSTSGFSVGTVLLQFAYDATFMSIMVWASVSMVLLLHRHRQRMQHILTPNQDARGQAESRATRTILMLVVTFVSFYLLNFICIMLHALFMHSHFFVRLVSEILTAVFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3V9M0-1", "protein_name": "Cystatin S like 1", "gene_name": "Cyssl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACLLYTQLFLLNTFILFLNLSLNPVLGQILAGIEKSIIEEEGALEALNFAVSEYNENNSDLYLSRVVEVKTVKTVQQQIEAGKTLLFDVILGKTACLKTQDDLSDCPLNEPTDLQEREFCSFEVHLPDWANAINLLSSICNRI", "length": 144 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X693-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "RVFLPLLLLGVILPGGDNEDGPTSFHLIQISTFVNNTWAQNQGSGWLDDLQIHGWESDSGTAIFLKPWSKGNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGCELHSGEAIESSLRGALGGLDFVSIQNHSCVPAPDGSSRGQKFCALTTQYQGISDIIERLLSETCPRYLLGVLDAGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDLMPIGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSLILLICLAFGVLRFMGSHRIGHD", "length": 317 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9Q9-1", "protein_name": "Predicted gene 6526", "gene_name": "Gm6526", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGDQGETRPRQKESAIPSCKKRRMKSFWGRHMSAGKKSSQNCNITNHMKNMNKLEDMKFYIRKINAKRLELFPILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKMTQSISDTIETYKEFIEDKDSYSFTHSYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEEKRFCDESSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G5E8X8-1", "protein_name": "Oocyte maturation, alpha", "gene_name": "Omt2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTLVFTKVHLESWVYKGLRGQHDSILELLKENLHHYLCIEFDEGLNDTVVYIIGFKFFAMFAMFVIVSLACNLRTKRNRARAWARGLQSPVWWNRRYFI", "length": 100 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ46-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLSFMSSLLENILYFQAGLGVLANIFLLVFYIFIILGHRPKPMDLISCQLTFVHIMMFLAGENFWLANIFESLNVENDFKCKATFYTKRVMRGLSICITCLLSVFQAVMISHRNSLLAKFKHKLKIYMINALFYIWTFNLSLSSNLIFYVGGFTNMSQTKQLKVTKSCSLIPMNYIIRGLILTVISSRDMFLVGVMLTTSTYMVIILCRHQRQCKHLHSTSHLRASPEKRATQTILLLVVFFVIMYWVDFIISSTSILLWMYDPVIMIVQKFVVNAYPAITPFVQISSDTRVIRVVKNWHS", "length": 303 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ88-1", "protein_name": "Vomeronasal 2, receptor 3", "gene_name": "Vmn2r3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMAIRKKCLILELTVFLCVELYAQYEDQNMTCRLMRKFNLTGYVEAENHHFVIGGQFPVHYRTIPTSDSDEEPESPMCEGFNFRGFRWMKTMIHTIKEINERKDILPEHTLGYQIFDNCFSTTKAMESSMVFLTGQDEYKPKWRNSTGKYLIGIIGAGGSTMSLAGARILLLNDVVQVGYASSSSILTEYLNVYRTIPSDKFQTEAIVNLIRHFGWVWIGAIASDDDYGKHGVKSFRKILETNNLCIAFSETIPKVYSNEKMQIAIDAVKSSTAKVIVLYATDFDLSPFVLEVIHHNIAHRTWIATEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDHLCTGKEKLKDLKNTYLDTSQLRITNNVRQAVYLMAYGLDRLIRVLIKEYREYLLHPKILAFMSYKLFEYIRKVKFTTHDGRKIELNVHGDIENGYYDILNWQMDNTGDIAIVKVGEYKFTRSKYELVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGFITGQPVCCFDCIPCEDGYVSEKPGQRLCNPCSEDDWSNAEKNKCVPKHVEFLAYEEALGFTLVILSIFGALVVLAVTVVYVIHRHTPLVKANDRELSFLIQISLVITVLSTMLFIGKPCNWSCMARQVTLALGFCLCLSSILGKTISLFFAYRISISKTQLISMHPSFRKLIVLLCVFGEIGVCASYLVLKPPSMFKNIERQNVKIIFECNEGSVEFLCSIFGFDVLLALLCFVTTFMARQLPDNYYEGKCITFGMLFFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGCLFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTMVSTVLDE", "length": 909 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BKT1-1", "protein_name": "piRNA-mediated silencing protein C19orf84 homolog", "gene_name": "Gm52993", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPTHLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRPPRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPSTPPVTPPSQDGQKEAGGLSEDWEADY", "length": 185 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BLP0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLTNILYFQAGLGILANTFLLCFYTFTILCHRSKPMDLTSCQLTLAHILFLLAGGDNWLAVILESLNIENDFKCKAIFYTNRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLKTYIIYAVFYIWFYNFLVCSHLLVYVGGFNNVSETNQMRVTESCSLFLMNYIISGLIFTVTTFRDVFLVGVMLITNAYIVIILFRHQRHCKHLHSIRHLRVSPEKRATQTILLLMVFFVVMYWVEIIISSTSLLLWMYDPGFLTVQKLIVTVYPTITPLVQISSDKRVINVLKNLQSKCQQIF", "length": 302 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "I3ITL1-1", "protein_name": "Gap junction protein", "gene_name": "gjc4a.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSWDFLTHLLDEISNHSTFVGKIWLTLLIVFRIVLTVVGGETIYDDEQSEFVCNTLQPGCKNVCYDAFAPLSHVRFWVFQIIMISTPSVMYLGFAMHKIARMADNEYQPRKHKMLSTVHQRMNRDYDMVDEMTEEVPMIPEEIEPSEKDNKSAASTKTTAASDAAVKHDGRRRIKRDGLMKVYVLQLISRVAFEIAFLFGQCILYGFEVSPSYICTRSPCPHTVDCFVSRPTEKTIFLLIMYVVSVLCLALTVLEILHLGIGGLRDSFRSRANRRLPVHRPSTSTICHRLSSAPPGYQAVQKKYSSGKLKAEFLSDSGRESLADDNTTRDLDRLRRHLKIAQQHLDQAYHTEEVGASHNSGPDSKSIAAEQNRLNQAQGGFGSTEEKVFKEAHA", "length": 394 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3L8A5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "FPSRQERTMRRENQSSISEFLLLGLPIPPEQQGVFFALFLGMYLTTMLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFSSVTVPKMLMNMQTQDQSIPYAGCVTQMYFFMFFACLDNFLLTSMAYDRYVAICHPLRYTSIMRGGLCTLLVTVSWILSCANALCHTLLLAQLSICAENTIPNFFCDLGALLKLSCSDTSFNDLAIFIAGVATIMLPLLCILVSYGHIGATILKIPSTKGICKALSTCGSHLSVVFLYYGTIIGLYLVPSSSTSSHKDIVASVMYTVVTPLLNPFIYTLRNRDMKGALEKLFHKAPVLS", "length": 320 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3L8Z8-1", "protein_name": "LRRC37A/B like protein 1 C-terminal domain-containing protein", "gene_name": "LOC100514982", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNVAEADIPPGHLKTHTGNPPVNPESGTSGYTNKLRQLRFLENLLDAEIQEKIDEVMKKEKTAMLIYSNILSPKLRRQILRKKLETARTQAESLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVYSRRRTLREGKVGRRRGFFGFLLRKRRSGESESEGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGAGEVSEAPADVILTIESDVEDLGEETDTAPEGPPE", "length": 799 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LBH4-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPPKFNPNEIKAMYLRCTSGEISAKSALAPKIGPLGLSPKEVGDDIAKAAGDWKGLRITVKPTIQNRQAQMEVVPSASALIIKAPKELPRDRKKQKNIKHSGNITFDEIVNIARQMRRCSLARELSGTIKEILGTAQSVGCNVNGRRPHDIIDDISSGAVECQAS", "length": 165 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LC12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFGANLTIFHPTVFILLGMPGLEIYHTWLSIPFCLMSIVAVLGIGALILVVLSESTLHEPMHVFLSMLAGTDNLLSTTTVPKALAIFWFHAGEIAFDACITQMFFIHVAFVAELGILLAMAFDRYVAICALLRYTAVLTPSTIVKLTLAIWGWGIGTIFPIIFLLKRLPYCRTNIIPHSYCEHIGVARLACADITVNIWYGFSVPMASVLVDVAFIAVSYTLILQAVFRLPSQDAQHKALNTCGSHIGVILLFFIPSFFTFLTHRFGKNIPHHIHILLANLYVLIPPMLNPIIYGAKTKQIRDSLAHMLSRVGMS", "length": 315 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LEQ2-1", "protein_name": "All-trans retinoic acid induced differentiation factor", "gene_name": "ATRAID", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARPGFRSPSSLVPRAAALLLVLSVPRALALPEICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQRTFATALGTQKRVLRMDLVLLMVLVSCSVFVLMASMATSVCARAHSHCSCSSVFWDPQHYPFPSCFGGLNAEKPRLHEPQRSSY", "length": 236 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "J3QM75-1", "protein_name": "Secretoglobin, family 2B, member 19", "gene_name": "Scgb2b19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLITGELSFQTTEACVPFFEGYASVVSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMG8-1", "protein_name": "T cell receptor alpha variable 13N-3", "gene_name": "Trav13n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRLLCSLLGLLCTQVCWVKGQQVQQSPPASLVLQEGENAELQCTYSTTLNSMQWFYQRPGGRLVSLLYSPSWAEQRGGRLTSSAASNESRSSLHISSSQITDSGTYLCAME", "length": 112 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QML3-1", "protein_name": "BTB domain containing 35, family member 29", "gene_name": "Btbd35f29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHQGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKKVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDALTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMQ9-1", "protein_name": "Predicted gene, 20873", "gene_name": "Gm20873", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRESSSNTLRNIVGRRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPGLYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANLSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMS5-1", "protein_name": "BTB domain containing 35, family member 2", "gene_name": "Btbd35f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEDIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKKVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW5-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADIILKYSPDEARSLKAYGELPEHAKINEMDTFGAGDDDEIMFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW9-1", "protein_name": "BTB domain containing 35, family member 6", "gene_name": "Btbd35f6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLQTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QN64-1", "protein_name": "BTB domain containing 35, family member 22", "gene_name": "Btbd35f22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QNQ5-1", "protein_name": "BTB domain containing 35, family member 24", "gene_name": "Btbd35f24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKDTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIYDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP08-1", "protein_name": "Histone H2A", "gene_name": "H2al1k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTRSQRGELPLSLVDRFLREEFHSSRLSSSALSFLTSVLEYLTSNILELAGEVAHTTGRKRIAPEDVRLVVQNNEQLRQLFKPGGTSVNEDDN", "length": 105 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP87-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCNIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINETDTFGAGDDDEIVFDDIGDEDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP96-1", "protein_name": "PRAME like 3C", "gene_name": "Pramel3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLRILDLRQDAGCKTVCPDISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKELSLSSFCLTDHLETVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD", "length": 463 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QPI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLTKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGAGDDDQIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QQ02-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLESMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7GP63-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL", "length": 51 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "K7N5V5-1", "protein_name": "Predicted gene 5862", "gene_name": "Gm5862", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N660-1", "protein_name": "Predicted gene 10220", "gene_name": "Gm10220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARKLGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPSWE", "length": 267 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r168", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNGAMKTTEEVALQIVLLCQFGIGTMANILLFVHNFSPLLTGCQLRPKEVICANMAVSSILILFMTVFPNNVFVAQRNLLNDLQCKLEYFVYMVARSTNLCSTCVLSTYQFVTLVPGNFSELMVRGRSPKVISYSCCSCWLFGILYNVYIPMKVSGPQNRHNKTSTKSKWVCFTSGFSVGIVFLSFAHDAIFISIMVWASVSMVRLLYRHYQRLQYIFPPHQGNRGYAEIRAAHSIVLLVVTFVSFYLLHCICFILHIVFVDSNLWLRHIGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYKKPVI", "length": 309 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Gm10670", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANDFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSMHQFVTLVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATNTILMLVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNLKHRRQLH", "length": 321 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6G6-1", "protein_name": "Predicted gene 16440", "gene_name": "Gm16440", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLCQKENGDEGEIRTTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKITKQRSKINELEELKLDMRKISNDMEEMGGILELYIYEDLNYRMNTEFNIIKSQHEKTMLDMNEMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLSEKVRILLNENRKLLVEQAGTQLSHEEEKRFCEEASKNICASSAKEQQCVNSSRNRNMAQTTT", "length": 218 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6J5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r127", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLTAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6P1-1", "protein_name": "Reproductive homeobox 2H", "gene_name": "Rhox2h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKRSINYLLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGPAAPVAGLMDNSNQEDLSATGCAQEKETQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPKFRHLWRHNFNVLQLQELESIFQCNHYISTTEENRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6T9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r175", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGFGTAVNIFLIVHNLSPILNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCFLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVNGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFLDSRVWLRRVKQILDVSFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6U2-1", "protein_name": "Predicted gene 3542", "gene_name": "Gm3542", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSNITNQISNINKVEELKLHIRKTSNERKEMCGILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRKLLVEQAGTQVSCEEERGSLRRPARTSVPQVQRNSSFPKCETVQQKLEHGTDHDMISLKEKCWWKRTGCAQEIHHCCLSSLITMAVMGCMLLLYFGFLGMNRP", "length": 270 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W5-1", "protein_name": "Predicted gene 17019", "gene_name": "Gm17019", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRDTREGRKDADLPSERNEGRRRWTWRMWMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTTEETNELRDRLIYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQELKKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSVKDEQENSNLETPEYQVSEAARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI", "length": 255 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r170", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGVGTAVNIFLIVHNLSPNLNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHHRLQHIQSTNQKLRVHAESRASHTILMLVVTFVTCYHLDCICTFCNISFLDSQLWLRRVKQILDASFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r94", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVIFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r103", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Y3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSIILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFYIHSRLFIRLVSEVLAAVFPSICLHNGVLLSY", "length": 295 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Z0-1", "protein_name": "Predicted gene 17026", "gene_name": "Gm17026", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "XRSSWVPKQACCPCSSGYFRERIEYTQTPDQGRRRPAAHHGGKGQETTGHGEGSAGAASPQAPTINDQEKRHERLEKLKRELQNIKNARDELQGILANYTNKDLNDRINFETFMLQMQHDQVMTDLKRMPQDISEALYKCKQLTKENQFYCFRNCHLLIESNLIQHKVRMLRKENRQLLREQIALEECNIETKILCKEGSQKIKDHYTKQQQI", "length": 213 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N701-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r159", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMSVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNTRGQAESKATRTILMLVFTFVSFYLLNFICIIFHTLLMHSHFFIRLVSEVLAAVFPSISPFLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N708-1", "protein_name": "Predicted gene 10128", "gene_name": "Gm10340", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSVI", "length": 205 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N731-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r57", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALNILLLCHVVVGTVGNILLFVHNFSPNLTDSRLRPIQVILINLAVANAFMLLFSTYSYDLIDFVPRKPPTDLKCKLAYFFHMVARGTIMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVSYSCFSCWLFSVLNNAYIPMNVSGPQKSHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFLGIMAWTSVSMVIHLNRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCIIILFHITFVESRLSLRHVTKLLSLSFPTISPLLLIFREPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N744-1", "protein_name": "Predicted gene 8104", "gene_name": "Gm8104", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNMNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIDFTIIKSQHEKTMLDMEKMTQSISDTIEKYKEFIEDKDSYSFTHTYLLKECNQLKEKVRMLLNENRKLLVEQADQETSYGEEKRFCDETSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N751-1", "protein_name": "Predicted gene 3696", "gene_name": "Gm3696", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPQEHLCPKCQGTAV", "length": 203 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N757-1", "protein_name": "Predicted gene 3667", "gene_name": "Gm3667", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRRLLVEQAGHKCPVGKKRGSLRKPARTSVSQVPRNSSVK", "length": 205 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7F4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r260", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGNSLKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVVRSTNLCSTCVLSVHQFVTLVPLNRGKGKLVLRASVTNMASYSSCSCWFFSVLSNIHIPIKFSGPQITDNNTDSKRKLFCSTSGFSVGIVFLQFAYDATFMSIMVWTSVSMVLLLRRHRQRMQHILTPNQNPRGQAESKATHTILMLVFTFVSFYLLNCICIIVHALFMHSHFFVRLVSEILTAIFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r163", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVMTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLKFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPNICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r242", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7H2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r256", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILGHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSLLVARSTNLCSTCVLSIHQFFTLFPVSRGKGKLILRASVQNLASYSFYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDDTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATHTILMLVFTFVSFYLLNCICIIFHAFSIHSCLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9JA28-1", "protein_name": "Interferon lambda receptor 1", "gene_name": "IFNLR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWRIRVLATLCFLWQPRVHGQLPPPQNVTLLSKDFDMILTWTPGEGSPPDVLYTVRYESKTRMDKWIKVPHCRNIHSVSCNLTCVIPNFFIKFRAQVKATSGRFHSPWVKSQFKEYHLDVELAPPLLNVNVKENVIHVNATFPMAICVESLPWMYDFNLWEAGSEDKKQYKSIFRKKAVTIDTTALRGNYCFNARSSIQSIDFKHSKFSQPVCMQLNYEGEWKFPFSATIPVFVLLILLTSASIIWLLKQDAKHKKMPQTLDLSNCKIAGPTFCCELRENEFLTDCLICTDKPMSQGKKNKTLAQNNQMWMASFLPSSSSEEEEEEEEEDSSSFIPYTEMLQFPRKHFNFQTPRTADAETILDSTSGVLSVVGGSTLDLSALGFSFFPIRKNEMDTSGSQGNEKASHSHSSSLGRISLTDVRFPGPREHGQHGTDSNDCLEVSLLHTLMNSSCTRLPADEHCLYKKDHDFTICYQKPTLDQPVQVSENPLLNEDPSMEKFIYLQTLQVAEDEGFASDCDSGNFTEGTPPASTVLSDELRISDMEKRYDKKFKFKGYQHSHYMRRS", "length": 567 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "L7MU37-1", "protein_name": "Reproductive homeobox 3H", "gene_name": "Rhox3h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEESRNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU51-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a76", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQSNNVTEFVLLGFTQDPAGQKALSVMFSLIYIVTMVGNLLIVGTVIASPSLGSPMYFFLASLSLMDAIYSTAITPKLIVDLLCEKKTISFRACISQLFIDHLFGGVDIVILLAMAYDRYVAICKPLHYLIIMNRRVCILFLVMAWAGGLAHALFQVLAVYNFPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLSIIGNNGAMCIVIFTLLLLSYGIILRFLKNHSQEGRRKALSTCGSHITVVFLFFVPCIFMYVRPVSSFPIDKFITVIYTIVTPMLNPLIYTLRNSEMKNSMEKLLQKTLSPSRIRLSSCCLCY", "length": 318 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU81-1", "protein_name": "BTB domain containing 35, family member 17", "gene_name": "Btbd35f17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANTWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU83-1", "protein_name": "BTB domain containing 35, family member 18", "gene_name": "Btbd35f18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDQVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MUB9-1", "protein_name": "Reproductive homeobox 2G", "gene_name": "Rhox2g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGLAAPVADLMDNNNQEDLGATGCAQEKEKQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPEFLHGWQQSFNVLQLQELESIFQCNHYISTTEAKCLARSMGVSKATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X6-1", "protein_name": "F-box/WD repeat-containing protein 15", "gene_name": "Fbxw15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFFIDRIWQERAKFRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVITWKSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLIGDTLGNIHIFRIPDLYLISTVNVLPYGFDGIYCSPQKKWVLLSKKHPHILPKVFYMSSFLRTSEFSAPVSTVLKLSLYERVFWTPRREDRITLMSRSGFPQVKMFETYDIKLEEFGNKRIVKGKLIASFELQCHKVNPQRFGVSDKNVIVCSTESSLLLFDINGLRLKTFQYCPEMIVKLSVDPLHVIVICNTGSMDVYAWEERSLLLRKCYRLHIERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS", "length": 466 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X9-1", "protein_name": "Demilune cell and parotid protein 1", "gene_name": "Dcpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSAPEGKNITSIRVFLKGRLIVGIQLNYDDNKDGQVYGSTAGKEMVARLSKEEHIIAAQGTYTPSALTQIIFTTNQPRQLMVGYYVGNSEYSSFPNDPSHVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 171 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y3-1", "protein_name": "PRAME like 51", "gene_name": "Pramel51", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIHSKERKYRLGLLEPGVTAFPCPNMVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSPGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFTLGDSEKLDEETIFSLISQLPTLHCLQKLYINDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPFCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELVSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVEL", "length": 520 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y5-1", "protein_name": "Olfactory receptor", "gene_name": "Or11g25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLSSPSNSSTITGFILLGFAYPREGQILLFVIFFIVYILILMGNASIICAVYCDQRLHTPMYLLLANFSFMEIGYVTSTVPNMLANFLSDTKVISFSGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYSSLMTGRLRNTLVTSCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRVPLIEVFWSIIMSMLLVIPFLFIMGTYILVLRAVFRLPSREGQKKAFSTCGSHLTVVSLFYCSVMIMYLSPTSEHEAGMQKLVTLFYSVGTPLLNPMIYSLRNKDMKNALQKILRT", "length": 311 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N227-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r125", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSMKTTEEVALQIILLCQFGIGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFARKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N255-1", "protein_name": "Predicted gene 3099", "gene_name": "Gm3099", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCLKGNGDEGETRPKKKEEGILSHEKGRRKLFWRRHRSARNTSTQNSNITNQISNINEVEELKLHIRKISNERKEMCEILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMTQFIIGSMQYSMELIEDNYSYSIKEDHLLRECTQLNKKVRILLNENRKLLVEQAGTQVSCGEEKRFCEEASKNICASSAKEQQLP", "length": 205 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N259-1", "protein_name": "Demilune cell and parotid protein 3", "gene_name": "Dcpp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSTPEEKNITSIRVFLQARSIVGIQFNYDDKDGQVYGSTAGKEMVARLSKEEHITGVEGSYSPSALTQIVFTTTQPRQLMVGYHVGIYQYSSYPDDPSFVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 170 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N270-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVIFKC", "length": 307 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N273-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r118", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSVHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N275-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r169", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVALQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLHGRAPKFVRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKSKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSPNQKLRFHAETRAAHTILMLVVTFVTCYLLDCICTSLHISFVDSRVWLRRVKEILAVSFPTFSPLLLIFRDPKDPCSLPFSC", "length": 304 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N288-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r151", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQILLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2A6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r116", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVFLSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2B4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLGAVFPNICPLLLIFRDPKDPFSVLFKC", "length": 307 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2C2-1", "protein_name": "Predicted gene 2974", "gene_name": "Gm2974", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKERRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N474-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1E", "gene_name": "Speer1e", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "ARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNQKNKEVEIDWALIEKYLVDVNLNGRTGADQQP", "length": 154 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0QWR4-1", "protein_name": "Aly/REF export factor family member 14", "gene_name": "Alyreffm17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGMTRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQKQQQQLSAEELDAQLDAYQEMMDTS", "length": 261 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R3T3-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "ENSRNOG00000067174", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFLVLCLILSLGDYGAFPLIQSRIHRGCKGERHSQPWQVAMYHYDKAVGWGWHPSPTTMSTSPSHNKVRLGQHSLDADGDTGQDVPVRHSIPHPLYNRSLQMPTFLSPDADNSHNLMLRQLREPANTTEAVRVTEEPTEEAKLGSRCLASGWGSTRPDKCMPGMLQCVDLTLMSSDVCTYAYSQRVTESMLCAGHQEGSRDTCMGDSGTTLICDRMLQGITSWGGNPCA", "length": 230 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R777-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKSKEKTLGSHYKILSYLGQGSFGTVNLAWHLKTQALVAIKMLEISKETISSILSERAILETLHHPNIIRLFQVLITSSHVNFVLEYAPGGSLFELIKEGGPLQEEVAKKIFGQTVSAVKYCHNLDIVHRDIKPQNILTDAEGNGKLTDFGLATKFRPGTLLKELCGTKEFYAPELVLREPYNGKKTDVWSLGVLLYFISTGYCPFRGVTTKDMEKKIATGTYTIPTYFSGQLENLIHQILTVSPEMRPSIEDIEKHPWVRKCEVNIPTITCPDYKIVEMLCGMGYNANKILESLQKKKYDEPMAAYLILKDKVRQEIEHGTTTSDMPVDQGPLPPQSPAHHSVSGLPLKRRASEPNFGLLHIWPPGEQVARHNVARSVSMPPIALYGTKKQNSTSTSALHSRPVASPCVCNTILEIEIPLPTKQDFDMKTSSPPQRIGYFQRLCQRIRDCLSRLCCFLWAPKVHSPRKWLP", "length": 474 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9M1-1", "protein_name": "Olfactory receptor family 52 subfamily N member 1B", "gene_name": "Or52n1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLLNVSSLTPASLILNGIPGLEEVNLCIFFPLFTMYSIALTGNFGLIYLIYSEEVLHRPMYIFLALLSFTDVLMCTSTIPNTLFISWFNFKKIDFKACLAQMFFVHTFTGMESGVLVLMVLDLYIAMCYPLRYATILTNVVIAKAGMLTFLRGVALVIPFIFLTKRFPYCKGNVIPHTYCDHISVAKISCGNVQINAIYGLMVVLLIGDFDIPCITVSYTMILWAAVSLSSADARQKAFSTCTAHICAIVITYVPAFFTFFTHRFGWHTIPSHIHIIMANLYLLMPPTMNPIVYGVKTKQIQKRVIRFFFKGRENSSHKF", "length": 321 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9X6-1", "protein_name": "Paired immunoglobin-like type 2 receptor beta 1 like 2", "gene_name": "Pilrb2l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAWILLLLLLAACLHTGNSAGYQKTQDYGVNQPEQLTGIQGGSIEIPFSFYFPWELAKDPQMSIAWRWKVFFGEVIYNSTLLFLHEHFKGRLIMNWTQGQTSGVLRILNLKANDQSTYFSRIFLQATEGMKLWQSRAGTKLIIHALSTTMASPSIIPSAVPTAGLENTRGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWVIFLWWKQRLPTARISHQVSLHHTPCIPQSSMSSLWESELVAAGFSCESHSWITPTSAMGARIPSPWNQGPPVCLWA", "length": 289 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RAD6-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f19f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSTNQSSVSEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILVISTDSHLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILSSQAISFSGCLTQLYFLCVSVNMDNFLLAVMAYDRFVAICHPLYYTTKMTHQLCVLMVSGSWVTASLNALLHTLLMARLSFCGDNIIHHFFCDVTPLLKLSCTATNLNELMILTEGAVIMVTPFVCILISYIYITNAVLRVSSFRGGWKAFSTCGSHLAVVCLFYGTIIAVYFNPVSSHSSEKDTAATVLYTVVTPMLNPFIYSLRNNDLKGALRKVVHRKI", "length": 309 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RBH5-1", "protein_name": "Surfactant associated 2", "gene_name": "Sfta2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPSMCLFLLLTLLCSSLAGPTKVTLQVKLTEASQAKTSQDSGFLDMLQKICLLLHLSPGTNVTLHHKGPPHHLTCRA", "length": 78 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCJ6-1", "protein_name": "EF-hand domain-containing protein", "gene_name": "AABR07013776.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADQLTEEQIAEFKEAFPLFDRDGDQTVTTKELGMVMGSLGQNPTEAELQDMISEVDADGNGTINFPEFLTMMARKMKGTDVEEEIREAFRVFDKDGYTSAAEFRHVMTTLGEKLTDEEVDGMIREADMDGDGQVIYEEFVQMVTAK", "length": 147 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCP1-1", "protein_name": "Leukocyte immunoglobulin like receptor B3", "gene_name": "Lilrb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSTLTALAYLGLILGSENPVLSGAFTKPTIKMVPSNVVTTGKQVTIFCEGSSHAKEYRLHKEGSPDYLTPTTFLETENKAKFSISPIQWNNAGQYWCSYRSLTNKLRQSDIMELVVTGVILGEVTLSALPSYVVTSGRNVTLQCASQVVYDRFILMKEDEKFSTAMPSWKIYPVLWGAIFTLGPVTSNQRWRFTCYGYYLSSSLIWSKPSNHLELLVSGTLHKPILWAHPGSMVTSGSPVTIWCEGDQETQTYVLYRQGSLESWNRQTQKDYNNKAEFTIPSVTYLNAGHYFCYSYTSAGWSEHSDTLELVVTGVYKKPIFLALKNPIVNLGVTVTISCTSNQSFNCFLLMDDDQKIYRFFDLQYSYSGESLARFQVGPITSRQRWRFRCYGYYTDNPQVWSEASDPLDFLVSGNLQKPTLWAEPGSVIESGNSVTIWCEGTMETQIYFLYKEGSPSSWLRQTPKEPGNKAMFFIAFMEKHNAGQYRCYCYNFGGWSQHSDTLELVMTGVHHGKPTLSAFPSPMVTSGGNVTLYCASSTIYDWYIVTGQDLKFSRFQRAQFIPTEMSQALFSEISVASRKKGPFRCYGFNESTPHLWSEASNPLEIHVSGVSRKPSLLNQQGPVLAPGENLTLRCSSELSYDRFSLSKEGRSDLPQLSVSQSQTGEYYANFFLYSVDFSIAGQYRCYGASRFSSEWSAPSVPQDILVTGHPPITPSLSVNPGTIVSSGENVTLLCQSSIPMDTFFLFKKGDAYPYMHQRLKFQGPQCKAEFSLSAVTPNIGGIFTCFGSQSSSPYLLSHPSVPVEIKVSGLAKYQKSLIWVSVVFFLLFFVLTLFFFLRLWHQNKHRKGVQTKIDLQHPEGAVEPKSIVGHLQKSSRPAPAIQEEILCEKRWPGREITEVSASDATVKVTRSADNVELGILSQHQDDPSIHLYAQVKPARLRRAQTTSSSLFPKELQHSKHRQKNRDQVIDQQADTSQDSHAVIYAQLHIMTPRQGRQTSLFPGRIC", "length": 1008 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCQ2-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100361204", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQSSIP", "length": 328 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCW7-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb1l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAQLLLLLLSAACLHTGNSAGYPKKNVFSVDQPAVLSGVQGGSIEISFSFYFPWELAKVPQMSIAWRWKNYHGEYIYNSTQPFIHEHFKGRLIVNWSQGQTSGVLRILNLKENDKATYFSRVFLPTTEGMKSWQSVAGTQLIIIHAPSTTVVSPSIIPSVVPIAGLEDTRGKRTPSLLNLGAMVRMVVSKVVVIIALYGWVIFLWWKQRSAWSLLSFLTTWKSEEQMQMNTAPAPKEFK", "length": 252 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCY4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "AABR07000137.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSAPLGSLGRKSKNQSLGLDMLGTVLSTDSLSCTFTVKYRSSPGQCSVNGKPLLLFNDERQNSPVGKPEKKGNATKVCAELNQSLKDIFQKMMNLESWLFESKGNHTLQVTVQSQYNQGIFMDGCWVFTIDRQYPFYFYPKIMTWRESHPDASRTVSQWQNNRQVAQSLRTCSMGDFSQCLRKLLTDSREVPRSTITTLDPTQPSSAIQIPPTVDSASSVFTTWSQYIFVLILCLAILIINALIP", "length": 246 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RD07-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000064269", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRMMAMQMMTNSISDAMERYKELIQVNSSYNIRQSQLLREQAQLKNNIQILLNEKRELLVEETELPASSVEAKRLCEEAGMNICDPRAKQQQV", "length": 93 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RDP5-1", "protein_name": "Zinc finger protein 353", "gene_name": "Zfp353", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVAETPGASQTVPCNTQPSPVESSQLVSGQSSEMPTWKKTVMASACCNPQETACTQNSTAHPGKASDFYFGEPSETASFIQQVVSAEQKSSPAGSCLMNLSSTTKSCLSHPLKTEVLDTRKTLCNEGHWGRTLNSDKTLLIQITTMYESQWRTLGNHPVAPSGYHEGQAPNMDHLVDSVSNQTFIGDLEMEPSCNHVLYTDQFITSFSEQNPFGDQQRSPVADNRFYADQKILPNGYQTFYEPQMSTNYQITCVCGQNVCRCQEILLSGEHLLSEYQTSGYRYDQDLIVNLQVTSPIGGEPLHDSQIPNSNFDTTSCGTKRTTSSEEDNLAWHPETSLSSEETFLDQMRTSVDQNVYPSHNGTLKIEESLEPQVTSLSNQAPYVGESSDTSNSPLIQIQPQEISSASGLDQGQHPEIKLDLKTQSPVSLKNPHNSKRYCCTYQGCKKSYKKSQHLKDHMKKHTGVKPYMCNKPGCDWKFFRLVDLNRHKQKHSGERPYPCPMCNKNYSRFYYLKQHLRSHIQASPTTAT", "length": 530 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9MSI7-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG42818", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFIHQREQLPFKHNEQDPNYLAPVIQKRKPMDKDPRNPLKRLKFLQEFPTQSSKGDLDDLKYPTQLEGRHDSPKYDKTFHTEIHANNETDSQELENIILEKNLQDSKTEFQENRASQPKNMHSFQIPEAIESHFNNKELQNENDLHKGLKQQYRSGSEQDKSGPENVREIASKLILQWAENQRSLLDSFVKAITDVLKVHDSKLNMKINISPRDIMILKDMLKQLLESIMQLREGSTSTRARIVLNKWIETQKSLIDSFSQAIQNTNQNVDNIANVYEVMENLNKNLRELVILLSDKESFPTTESSSSQQTTSIYATTTFYLTSSTFGSTHPIVDENINRVNIMGNLIKGLRNIMVQMDETNKTSSSTSYTTTESTYIQPSTSTYLNAEVTTSHPTTSTYEVTNIITDESKIKDMFNLIKGIEDLISQYNGKHKFTSTTSLTGKSNSREPTMTTYSSAGGITSHSFTTTSPKTVTTSSSHSTTESSPSHPTTSNYEVTVFDQDSHKFKVMKNLIKELKGLIEHFSDTKNITSTTYSTGDSKSFQPTATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLNTTLSITGTTTPNLTTSTHDFKDQINDDDSKSLKHLIKILSDLVYSLNDKNNIKSTSQLTTESTFNSSINITNSTTVASSTFSTTESMAIHSTPYLSTREITVFQFNDVENINPIISNNSTTVTTNIHSSTYTTSTTDNTTSYPNLSTTESSPTFDSTISHSNTSSQTRSLGSYKDKIKNIVELLKKLRKIQKTLADKSKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELEILLSTTVNPNEDTTDLTMEKLLKLFDDFERMYNVLLDDSIQSTTQSTTQNNTIFSTTYSTIFSTTQSISTTSPTQYALTSSTPNTSTTSHSSTPSSINNLRSDESNNHQPIVDAIQQLKMALYHDFYAFKKSQEERMEKILQLLNGKPIDRRTKTIAKPRTIRKKVSREIQKRNSDVKEDKIHHYKADKFIKNPKNGNQDSHIPKPILNSARSKIKDVPLKLSAIKVNGGLKHLPSKRKANEEVSAMHEIFPEPVSILPHK", "length": 1085 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O08640-1", "protein_name": "Keratin-associated protein 14", "gene_name": "Krtap14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCNSCSGTFSQSFGGQLQYPISSCGSSYPNNVFYSTDLQTPITHQLGSSLHSGCQETFCEPTNCQTAYVVSRPCQRPFYSQRIRGPCRPCQSTFSGSLGFGSRGFQSFGCGYPSQGFGSHGFQSVGCGTPTFSSLNCGSSFYRPTCFSTKSCQSVSYQPTCGTGFF", "length": 167 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O21032-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "mrpl16", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIPNRQKFTKNHKRNLITKETRKTGLVLGNYGIKATETGYLKMKQMERIKGDLVKKLKDNMDIYFNFYPLFGLTNKGTARMGAGKGEVSEWYVLVKKGSIVVEFIKSRMTAGAMQKVIRYSANKWPIKVRMTQIKQGLYEKKI", "length": 144 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21042-1", "protein_name": "Cytochrome c oxidase subunit 1+2", "gene_name": "2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKILEIYDKQIAEKEGNIFIFISKWIISVDHKNIGTMYTNFSILAGIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIMVGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVGILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVLAGGLTMLITDRNFETTFFDPIGGGDPILYQHLFWFFGHPEVYILILPGFGLVSIILSKYSNKGIFGVKGMISAMSAIGFLGFLVWAHHMYTVGLDVDTRAYFTAATMIIAIPTGIKIFSWLATLWGGVIKITTPMLFVIGFLVLFTIGGLTGVVLANGGLDISLHDTYYVVAHFHYVLSMGAIFAIFAGYYYYYSIMNSTRLFGVVRYNEQLGRIHFWTMFIGVNVTFFPMHFLGLAGMPRRIGDYPDAYIGWNLIASYGSLITAFGLLFFVVNIFTPYIRRSVNIKNGAIILMGLDFARDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEIINPTVTIKIIGHQWYWSYEYGDNASNLIEFDSYMVYERDLAEGQLRLLEVDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFMPIKVQAVKLGEYFSKLNEK", "length": 764 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21049-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "cox3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKGFFENLFRQNVRSVINTGKKVGARAAAREIINQEWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGVISSKLGLLIALSSFIGGLVIWTISIIFDSLYDQQHTYEVKRGLVMGMMMFIISEVMFFFSFFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIYLKKRNKVIKTRLYFTLLCAVVFLACQGYEYFFAPFSMNDGIYGSLFFLLTGFHGFHVLVGSILIGIITIRFIVGNFNLLNVGTNFQIYKNKSTGFACTLFYWHFVDIVWIFLYIVIYWWGSR", "length": 435 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O23373-1", "protein_name": "Formin-like protein 3", "gene_name": "FH3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRLRLAFLAISLVVFVCVSEEIFSRGGLNLLRFSVYGEDVAEQTWIHQNPRRKLISYPKKFSVSAPNLAFGPAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQSVPGPPRPPPQREKKDDILMKLIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGPRDEGPLLRLSTGSTENSPTVASTSRKMFSVASSKKRSFLSRVSLKRNGHEFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDKMANPDQKMVWHEISAGSFQFNEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEEVVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFKRIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGDAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRLQSRSFSSVKTDDSNADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFLKTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSNQPSPDFRQRLFPAIAERRMDSSDDSDDEEDSSPS", "length": 785 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O35698-1", "protein_name": "RNA-binding motif protein, Y chromosome", "gene_name": "Rbmy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSPKDGLYSASRESYSSNTKIWGIPWRSWRKQI", "length": 380 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O60309-1", "protein_name": "Leucine-rich repeat-containing protein 37A3", "gene_name": "LRRC37A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSAQCPALACVMSPLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPEPWSSHSSHFPRESPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGELPLEPEQFLASQQDLKDKLSPQERLPVSPKKLKKDPAQRWSLAEIIGIIHQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISEQQQPVQPSESSREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTPPKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEMLSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFEGLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLIVPSHMACCLCQFKNSIEAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLSYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGKNRQRLNRVLMGPRSIQKRHFKEVGRQSIRREQGAQASVENTAEEKRLGSPAPRELKQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGAPSTSSPAKALPQVRDRWKDLTHAISILESAKARVTNMKTSKPIVHSRKKYRFHKTRSRMTHRTPKVKKSPKVRKKSYLSRLMLSNRLPFSAAKSLINSPSQGAFSSLRDLSPQENPFLEVSAPSEHFIENNNTKDTTARNAFEENVFMENTNMPEGTISENTNYNHPPEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPGDQFEIQLTQQLQSVIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLVSRTGHLMKLLSGQQEVKASKIEWDTDQWKTENYINESTEAQSEQKEKSLEFTKELPGYGYTKKLILALIVTGILTILIILLCLIEICCHRRSLQEDEEGFSRDSEAPTEEESEALP", "length": 1634 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O80489-1", "protein_name": "small monomeric GTPase", "gene_name": "SARA1A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALANVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYIK", "length": 193 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80614-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSDMRDERFFYHRYLSVTNRTTPTTATNLPTSTSNMRSTSLMTPRVAHTSMSSGGDFPDDRFFHARHQSATDRAASNRSRAIMPISTTNVPSSTSNSPRVLQTSMSRRGTSPMSSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVITSSEEVANTFTQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTSMSRRGTSPMSSSTRRNVQSSMSGRETVSSSTSTSSMQTSMSTPEIMPTSSRNVITRSEEVANTFSTQTPYIQFGRLWETNTTSSTRSRTTVPTSTTNVPSSNSSRVLQTSMSTRGTFPMSSSTRMSVQASMLAPGTVSSSMSTVEIMPTSARNMITMSEEVANSFTQTSYIQFGSLWETFKTVTKLSRVAMVENGECVICLEEWRKETYVTSSTSNMRTSSLMTLTRFIDEQISLRATVSSTRTTARLLTNESPATIRAVAMLPRVAMVEKGECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCRYKLSCVYKSFLML", "length": 535 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81153-1", "protein_name": "Proteasome subunit beta type-3-B", "gene_name": "PBC2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD", "length": 204 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P00757-1", "protein_name": "Kallikrein 1-related peptidase-like b4", "gene_name": "Klk1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP", "length": 256 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P01241-1", "protein_name": "Somatotropin", "gene_name": "GH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P02762-1", "protein_name": "Major urinary protein 6", "gene_name": "Mup6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04071-1", "protein_name": "Kallikrein 1-related peptidase b16", "gene_name": "Klk1b16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSRIVGGFKCEKNSQPWQVAVYYHKEHICGGVLLDRNWVLTAAHCYVDECEVWLGKNQLFQEEPSAQNRLVSKSFPHPGFNMTLLTFEKLPPGADFSNDLMLLRLSKPADITDVVKPIDLPTKEPKLDSTCLVSGWGSITPTKWQKPDDLQCMFTKLLPNENCAKAYLLKVTDVMLCTIEMGEDKGPCVGDSGGPLICDGVLQGTVSIGPDPCGIPGVSAIYTNLVKFNSWIKDTMMKNA", "length": 261 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04644-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "Rps17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV", "length": 135 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P05817-1", "protein_name": "Prestalk D11 protein", "gene_name": "ampA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKLILLLILSSCLVLSVKSEVNVDCSLVRCAQPICKPHYRLNMTDSCCGRCEPCTDVACTLQVKYCQDGEVPTGCCPCTLPPTKPDCSLVKCARPVCKPYYRLNMTDSCCGRCEPCTGVACTLQIKYCKDGEVPTGCCPCTPQPTKKPDCSKVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQPTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPFGCCPCRENLTQ", "length": 284 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P06325-1", "protein_name": "T-cell receptor gamma chain V region 5/10-13", "gene_name": "Tcrg-V1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLRWPTFCCLWVFGLGQLEQTELSVTRATDESAQISCIVSLPYFSNTAIHWYRQKAKKFEYLIYVSTNYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVCRSGTSWVKIFAKGTKLVVIPP", "length": 135 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSETAPAASSTLVPAPVEKPATKRRGKKPGMATARKPRGFSVSKLIPEALSMSQERAGMSLAALKKALAAAGYDVEKNNSRIKLALKRLVNKGVLVQTKGTGASGSFKLSKKAASGNDKGKGKKSASAKAKKLGLSRASRSPKSSKTKVVKKPKATPTKGSGSRRKTKGAKGLQQRKSPAKARATNSNSGKSKMVMQKTDLRKAAGRK", "length": 208 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07628-1", "protein_name": "Kallikrein 1-related peptidase b8", "gene_name": "Klk1b8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFLILFLALSLGGIDAAPPLQSRVVGGFNCEKNSQPWQVAVYDNKEHICGGVLLERNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLTLKEIPPGADFSNDLMLLRLSKPADITDAVKPITLPTKESKLGSTCLASGWGSITPTKWQKPDDLQCVFLKLLPIKNCIENHNVKVTDVMLCAGEMSGGKNICKGDSGGPLICDSVLQGITSTGPIPCGKPGVPAMYTNLIKFNSWIKDTMTKNS", "length": 261 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P07647-1", "protein_name": "Submandibular glandular kallikrein-9", "gene_name": "Klk9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFLILFLALSLGQIDAAPPGQSRVVGGYNCETNSQPWQVAVIGTTFCGGVLIDPSWVITAAHCYSKNYRVLLGRNNLVKDEPFAQRRLVSQSFQHPDYIPVFMRNHTRQRAYDHNNDLMLLHLSKPADITGGVKVIDLPTEEPKVGSICLASGWGMTNPSEMKLSHDLQCVNIHLLSNEKCIETYKNIETDVTLCAGEMDGGKDTCTGDSGGPLICDGVLQGLTSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKENP", "length": 259 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P08932-1", "protein_name": "T-kininogen 2", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLITILLLCSRLLPSLAQEEGAQEMDCNDETVFQAVDTALKKYNAELESGNQFLLYRVTEGTKKDGAETLYSFKYQIKEGNCSVQSGLTWQDCDFKDAEEAATGECTTTLGKKENKFSVATQICNITPGKGPKKTEEDLCVGCFQPIPMDSSDLKPVLKHAVEHFNNNTKHTHLFALTEVKSAHSQVVAGMNYKIIYSIVQTNCSKEDFPFLREDCVPLPYGDHGECRGHTYVDIHNTIAGFSQSCDLYPGDDLFSLLPKKCFGCPKNIPVDSPELKEALGHSIAQLNAQHNHLFYFKIDTVKKATSQVVAGTKYVIEFIARETNCSKQTNTELTADCETKHLGQSLNCNANVYMRPWENKVVPTVRCQALDMMISRPPGFSPFRLVQVQETKEGTTRLLNSCEYKGRLSKAGAGPAPDHQAEASTVTP", "length": 430 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C0S7-1", "protein_name": "Histone H2A.Z", "gene_name": "H2az1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV", "length": 128 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C2B7-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "MRPL52", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALGMLLSTGVRRLHCGSAARAGSQWRLRQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAQREKFARRVVLLSQEMDAGLQAWQLRQQEKLQEEKRKQQNALKPKGVLLQNPGPSQ", "length": 124 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C644-1", "protein_name": "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1", "gene_name": "Ppip5k1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWSLTANEDEDESATAHFFLGAGDEGLGTCGIGMRTGESDSELLEDEEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELRCVIAIIRHGDRTPKQKMKMEVTHPRFFALFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPGAEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASSEGQDLQREPPAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDSDSLSSCQHRVKARLHHILQQDAPFGPEDYDQLAPTGSTSLLNSMSVIQNPVKVCDQVFALIENLTHQIRERMQDPSSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKVEIAVGFCLPLLRKILLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEGSAPAGCGFRPASSENEEMKTDPGSIENLCPAKPSDEPDRALQTSPQPVEGTGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARTHGKKLPPAGLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQVSEFLTKVCQRHTDAHAQASAALFDSMHNHQASDNPFSPPRTLHSPPLQLRHRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSHFGFSDQSSVNTQMIEEKQGLGLLQETPGDGTPEFHIELAESTQSPQEPPVEISPPGSQDDTEVNQTCQEVPDTIQPCHDILEEIGQPNQEVPDISQLLLKNHDTATNTCQPCQASQLSKKVYEEICQLCQDNPEESNQLCQEVSVELGRMVHRFPVSIGSTTQETLMEIGRPTQEIPEEPCQEFSEKVGMLTQKASAISELSQDILETDNPSQELSEETDLQAQEVSEEIDQEPEVVDELSNEDIS", "length": 1434 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C7H9-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7", "gene_name": "USP17L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALHSPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGVSDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0CW02-1", "protein_name": "Lymphocyte antigen 6C1", "gene_name": "Ly6c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTSHTTKSCVLILLVALLCAERAQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVPIRDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVVLQTLL", "length": 131 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DKL4-1", "protein_name": "Spliceosome-associated protein 130 A", "gene_name": "SAP130A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DKL6-1", "protein_name": "Spliceosome-associated protein 130 B", "gene_name": "SAP130B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DML3-1", "protein_name": "Chorionic somatomammotropin hormone 2", "gene_name": "CSH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DMV2-1", "protein_name": "Cancer/testis antigen family 45 member A9", "gene_name": "CT45A9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETAFSPKSQQEINADIKRQLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DOV1-1", "protein_name": "Interferon-activable protein 211", "gene_name": "Ifi211", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLRGLECINKHYFSLFKSLLARDLNLERDNQEQYTTIQIANMMEEKFPADSGLGKLIEFCEEVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLASERGETSATQEETSTAQAGTSTAQAGTSTAQAGTSTAQKRKSMREEETGVKKSKAAKEPDQPPCCEEPTAMCQSPILHSSSSASSNILSAKNQKSQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMFHATVATVSQYFHVKVFNIDLKEKFTKNNFITISNYFESKGILEINETSSVLEAAPKQMIEVPNCITRNANASPKICDIQKGTSGTVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVVGSGQWHNINCKEGDKLHLFCFHLKRERGQPKLVCGDHSFVKVTKAGKKKEASTVQ", "length": 425 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DTA3-1", "protein_name": "Speedy protein E11", "gene_name": "SPDYE11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD3-1", "protein_name": "Speedy protein E14", "gene_name": "SPDYE14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD4-1", "protein_name": "Speedy protein E15", "gene_name": "SPDYE15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW11-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 6", "gene_name": "TAF11L6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW12-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 7", "gene_name": "TAF11L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW13-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 8", "gene_name": "TAF11L8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW14-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 10", "gene_name": "TAF11L10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11588-1", "protein_name": "Major urinary protein 1", "gene_name": "Mup1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEKHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P11589-1", "protein_name": "Major urinary protein 2", "gene_name": "Mup2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAKLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13255-1", "protein_name": "Glycine N-methyltransferase", "gene_name": "Gnmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG", "length": 293 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P13675-1", "protein_name": "Y-linked testis-specific protein 1", "gene_name": "Ssty1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVSCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYFVKYDGIDSIYVLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFERKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P15515-1", "protein_name": "Histatin-1", "gene_name": "HTN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN", "length": 57 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P16374-1", "protein_name": "Zinc finger protein 60", "gene_name": "Zfp60", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSSSQHMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRNIMLETYSNLVAVVGRCIPKPDLIVLLEPEKEPWMAVKKETGRPSQGLETGFEAENRSPKNHVYNKKLPKQTIQQLSKTSDVQGVSVSNGPGYSVIKEPQNYQEGDANRNITNKKEMSTYTSKTLAHNKEKPYKCKDCGKCFGCKSNLHQHESIHTGEKPYECKDCGKTFRLPQMLSRHQKSHSDERPFECNICGKSFHLPTLLQYHKNIHTGLKPFECEECGKSFKSFNRISTLFQHRTIHAGMKPYKCNVCGKAFNRRSNLLQHQKIHSEDRPFHCKVCGKAFTVLAQLTRHENIHTEDKSFECKQCGKIFSNGSYLLRHYDTHTNEKPFECNICGKAFRLHLYLSEHQKTHTDEKPFKCKLCESAFRRKYQLSEHQRIHTDGKPYQCKDCWEFFRRRSNFIEHQSIHTGKKPFECKDCGKVFRLNIHLIRHQRFHSDEKPFECKECGKAFHFSSQLNNHKTSHTGQTPFECKECGKSFKRVSSLVEHRIIHSGVKPYKCNACGRAFNRRSNLMQHEKIHSDERPFECKDCGKAFTVLAQLTRHQTIHNGKKSYECEQCGSAFRLPYQLTQHQRIHYDVKPFQCKECGRAFVRSTGLRIHERIHTGEKPFQCKECGEAFQYHYQFLGHFRIHTGKNPYECSECGKYFTYGRDLKVHQSIHNLEKP", "length": 707 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P20816-1", "protein_name": "Cytochrome P450 4A2", "gene_name": "Cyp4a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFSVFSPTRSLDGVSGFFQGAFLLSLFLVLFKAVQFYLRRQWLLKALEKFPSTPSHWLWGHNLKDREFQQVLTWVEKFPGACLQWLSGSTARVLLYDPDYVKVVLGRSDPKPYQSLAPWIGYGLLLLNGKKWFQHRRMLTPAFHYDILKPYVKIMADSVSIMLDKWEKLDDQDHPLEIFHYVSLMTLDTVMKCAFSHQGSVQLDVNSRSYTKAVEDLNNLIFFRVRSAFYGNSIIYNMSSDGRLSRRACQIAHEHTDGVIKTRKAQLQNEEELQKARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHAYLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR", "length": 504 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21571-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "Atp5pf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQRIFRLSSVLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGPVDTGPEYQQEVDRELFKLKQMYGKGEMDKFPTFNFEDPKFEVLDKPQS", "length": 108 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P22237-1", "protein_name": "NADH-ubiquinone oxidoreductase subunit 9", "gene_name": "nad9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKDYKNELKVKINLGEHLRLSIPGLVKKIMYKTHYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVDCLNIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMFGIYFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVNDKKIIYKPIELMQEYRNYNFGAVWGDYERKVYLENIIK", "length": 209 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P22283-1", "protein_name": "Cystatin-related protein 2", "gene_name": "Crp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYKTLCGTQLLLAIFVLFLNFSHATAKGTRGPMEIFKKNFMEKNKLNDVYDIFKFLYNKFSHDTYLSNIKNQSFTMNTWGFGEIEVVKTKCRKIDSDFYKCSFQWEFCNIKRTPGVTIYYITLPGSVRCRKLLSKLVNCPFEEQTEQLKREICYFQLYPDYIEQNIRSVRFNCYTK", "length": 176 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23266-1", "protein_name": "Olfactory receptor 1f45", "gene_name": "Or1f45", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAVFGNMDNFLLAVMSYDRFVAICHPLHYTTKMTRQLCVLLVVGSWVVANMNCLLHILLMARLSFCADNMIPHFFCDGTPLLKLSCSDTHLNELMILTEGAVVMVTPFVCILISYIHITCAVLRVSSPRGGWKSFSTCGSHLAVVCLFYGTVIAVYFNPSSSHLAGRDMAAAVMYAVVTPMLNPFIYSLRNSDMKAALRKVLAMRFPSKQ", "length": 313 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24049-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "Rpl17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE", "length": 184 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24868-1", "protein_name": "G2/mitotic-specific cyclin-1", "gene_name": "CLB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSRSLLVENSRTINSNEEKGVNESQYILQKRNVPRTILGNVTNNANILQEISMNRKIGMKNFSKLNNFFPLKDDVSRADDFTSSFNDSRQGVKQEVLNNKENIPEYGYSEQEKQQCSNDDSFHTNSTALSCNRLIYSENKSISTQMEWQKKIMREDSKKKRPISTLVEQDDQKKFKLHELTTEEEVLEEYEWDDLDEEDCDDPLMVSEEVNDIFDYLHHLEIITLPNKANLYKHKNIKQNRDILVNWIIKIHNKFGLLPETLYLAINIMDRFLCEEVVQLNRLQLVGTSCLFIASKYEEIYSPSIKHFAYETDGACSVEDIKEGERFILEKLDFQISFANPMNFLRRISKADDYDIQSRTLAKFLMEISIVDFKFIGILPSLCASAAMFLSRKMLGKGTWDGNLIHYSGGYTKAKLYPVCQLLMDYLVGSTIHDEFLKKYQSRRFLKASIISIEWALKVRKNGYDIMTLHE", "length": 471 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25389-1", "protein_name": "Probable serine/threonine-protein kinase KCC4", "gene_name": "KCC4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTVANTETHSAAKPSSTIGPWKLGETLGFGSTGKVQLAQHERTGHRTAVKVISKSIFNNNGNHSNDDSVLPYNIEREIVIMKLLSHPNVLSLYDVWETNNNLYLILEYAEKGELFNLLVDHGPLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLLDSFYNIKIADFGMAALQTDADLLETSCGSPHYAAPEIVSGLPYEGFASDVWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDTEISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHTSASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKILYALLYRFKLDSVRGSNKKNRNKIKKTKKNKRSSTLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLLSSNPTDSSPIPLRSSKRITHINVASANTQATPSGVPNPHKRNSKKRSSKRLSYMPNTKRSSLTSKSLSNFTNLIDDDDWEYIEKDAKRTSSNFATLIDEIFEPEKFELAKREKAELQRKVQEAKRQSVNAQKINEDEFGSEVSDGMKELKKINDKVSSPLINYEFSQQELLQDIDTLLTNRYQLSSYTRPISRLDPGLTPVTETLPNNLKEKTALLQDTEKKIIETIRRSKFLGSLLNVRGGLSPGKSELAPIEESPIVSTTPLIYNDRMEPRRISDVEVPHFTRKSKHFTTANNRRSVLSLYAKDSIKDLNEFLIKEDPDLPPQGSTDNESRSEDPEIAESITDSRNIQYDEDDSKDGDNVNNDNILSDFPQGVGISQEYDMKDKNPNQSPISKSAEPTLVVKLPSLSSFQGKNASGLGLYQREPSKVTLPSLTSNNSSVGENIEDGAEKGTESEKIAASLSDDDLKEDNDKKDNDTVNAPTTVKKPPNSVLLKKFSKGKILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVLDK", "length": 1037 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28312-1", "protein_name": "Alpha-defensin 5", "gene_name": "Defa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHEELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P28742-1", "protein_name": "Kinesin-like protein KIP1", "gene_name": "KIP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARSSLPNRRTAQFEANKRRTIAHAPSPSLSNGMHTLTPPTCNNGAATSDSNIHVYVRCRSRNKREIEEKSSVVISTLGPQGKEIILSNGSHQSYSSSKKTYQFDQVFGAESDQETVFNATAKNYIKEMLHGYNCTIFAYGQTGTGKTYTMSGDINILGDVQSTDNLLLGEHAGIIPRVLVDLFKELSSLNKEYSVKISFLELYNENLKDLLSDSEDDDPAVNDPKRQIRIFDNNNNNSSIMVKGMQEIFINSAHEGLNLLMQGSLKRKVAATKCNDLSSRSHTVFTITTNIVEQDSKDHGQNKNFVKIGKLNLVDLAGSENINRSGAENKRAQEAGLINKSLLTLGRVINALVDHSNHIPYRESKLTRLLQDSLGGMTKTCIIATISPAKISMEETASTLEYATRAKSIKNTPQVNQSLSKDTCLKDYIQEIEKLRNDLKNSRNKQGIFITQDQLDLYESNSILIDEQNLKIHNLREQIKKFKENYLNQLDINNLLQSEKEKLIAIIQNFNVDFSNFYSEIQKIHHTNLELMNEVIQQRDFSLENSQKQYNTNQNMQLKISQQVLQTLNTLQGSLNNYNSKCSEVIKGVTEELTRNVNTHKAKHDSTLKSLLNITTNLLMNQMNELVRSISTSLEIFQSDSTSHYRKDLNEIYQSHQQFLKNLQNDIKSCLDSIGSSILTSINEISQNCTTNLNSMNVLIENQQSGSSKLIKEQDLEIKKLKNDLINERRISNQFNQQLAEMKRYFQDHVSRTRSEFHDELNKCIDNLKDKQSKLDQDIWQKTASIFNETDIVVNKIHSDSIASLAHNAENTLKTVSQNNESFTNDLISLSRGMNMDISSKLRSLPINEFLNKISQTICETCGDDNTIASNPVLTSIKKFQNIICSDIALTNEKIMSLIDEIQSQIETISNENNINLIAINENFNSLCNFILTDYDENIMQISKTQDEVLSEHCEKLQSLKILGMDIFTAHSIEKPLHEHTRPEASVIKALPLLDYPKQFQIYRDAENKSKDDTSNSRTCIPNLSTNENFPLSQFSPKTPVPVPDQPLPKVLIPKSINSAKSNRSKTLPNTEGTGRESQNNLKRRFTTEPILKGEETENNDILQNKKLHQ", "length": 1111 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29314-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED", "length": 194 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P33579-1", "protein_name": "Prolactin-8A5", "gene_name": "Prl8a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELALSQPSFFGTLLMLVVSNLLLWEKAASIPACMVEDGGCWDPLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQFADLSSQLIRKDETVLKAGTYCHSNRAKPKSRGVNIDIEEYLKMSINFCGFMDQPLFHLVIELSAMEGVPETILSKAKDLEENNRQLLDDLRWILTKVFPTAEIKEEFPSWDYLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQILNCLITGKDC", "length": 238 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAVIKKGARRKDVKEPKKRSAKIKKATFDANKKKEVGISDLTLLSKISDESINENLKKRFKNGIIYTYIGHVLISVNPFRDLGIYTNAVLESYKGKNRLEVPPHVFAIAESMYYNLKSYNENQCVIISGESGAGKTEAAKRIMQYIAAASNSHSESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKFNSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQFTKGASDTYKQMFGVQMPEQYIYTAAAGCTTADTIDDVKDYEGTLEAMRTIGLVQEEQDQIFRMLAAILWIGNISFIENEEGNAQVGDTSVTDFVAYLLQVDASLLVKCLVERIMQTSHGMKRGSVYHVPLNPVQATAVRDALAKAIYNNLFDWIVDRVNVSLQAFPGADKSIGILDIYGFEIFEHNSFEQICINYVNEKLQQIFIQLTLKAEQETYEREKIKWTPIKYFDNKVVCDLIEAKNPPGILAAMNDSIATAHADSNAADQAFAQRLNLFNSNPYFELRANKFVIKHYAGDVTYDINGITDKNKDQLQKDLIELIGTTTNTFLSTIFPDDVDKDSKRRPPTAGDKIIKSANELVETLSKAEPSYIRTIKPNQTKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQTFEKFVERFYLLSPDCSYAGDYTWDGDTLEAVKLILRDAMIPEKEFQLGVTSVFIKTPESLFALEDMRDKYWYNMAARIQRAWRRFLQRRIDAAIKIQRTIREKKGGNKYVKLRDYGTKLLAGKKERRSMSLLGYRAFMGDYLSCNESKTKGSYIRRQVGIKDKVVFSIKGECLHSKFGRSAQRLKKVFILTKKTFYIIGQTREQNAMKYTQDYKIDVGKIKQVSLTNLQDDWMGVILVNSTQSDPLINTPFKTELMTRLKKLNEKIMIKVGPTIEYHKQPNKLHTVRSKISDSAPKYGDIYKSSTIYVRRGHPANSKSNKKPKNPGGLSGKPIKSKKSKHKSTHKHTHSHRSHRDAAKKQPLPSQKPVNPLSLAATAAQAAYNPKPDKTVPIKSSAIPAAKVSSKHSSKPSSKEKVAVKKASSSHKSSSAKQNQVSMPPSKGVEKNKEPLKETTATATANIPIPPPPPPMGQPKDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVPVAATGAVNDVTNQKSSQIDNTISSAQEGVQFGSATVGPTSDNQSNPVGTFSDGLASALAARANKMRAESADDDDNDDGDDDDDW", "length": 1272 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36046-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "MIA40", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLRNLVVRNACRNRPSIQVARGLCRHQTRRLMASSPQFGRNSNQEKTAGFIMGILSMAGALYFIAPNRKPLFASRKVESDKTAEEELSSGGEQSPENEDDNNSKSDENGDDNDSKNDETEAGPQLGGDKIGASKVAEDGELVVLAEEDNKSSEDKDTDESKVSTKDDEQSNEDNATANNQKDENISSENSEENTSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTEDNNGEEESSKKTVSDSENSAKQSESSDEEKEELRKQEEKQMGPTEEEVQHEGAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDDEEPQDKVKVNTIESAPNVSSAKENAAKKAEQSDVKKEPLNEESKP", "length": 403 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37106-1", "protein_name": "Signal recognition particle subunit SRP54 1", "gene_name": "SRP-54A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRIPLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGIKIPKNGDMSKVIPPQMLKQMGGMSGLQSLMKQMGSAKDMMGMFGGGGK", "length": 479 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38150-1", "protein_name": "Inactive deaminase YBR284W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVQNNESVFFVECDSYKESPSTSPIRLDDLDGNDAVSDQGLAFDGDVGITSQARVRNPRAQIFEDSNTDVVLHLDDLDMVPLNTKFDMQMEMGSPMAMPAETPPPVEPLKTKDLAYSSLAHLPSYFFEQTHFRIDRKCLLEMSKLRRNYLTISKQDALSCPQLHSRVAGGYLKPVKEKLFGIRHFLDLEESNTVNLLQDGNYMTELFNSQINIPTFKEFREDFEWCLKIIRDRSLSRFSEKRLQYLVNKFPVFQHLHSKEEMRQSKKVPHKDFYNCRKIDLNLLLSGCFSQWQLTEFIWTKLRKEPDRVIHQAFNGSHITLSQLFKVNFEETGQFFNGLKIIDDSFLEWYKVIYLAKYHLVNDEMEIHTGSHGKQLRYYLIAKTFLEFDNYINGEYLAELLKTFLIKPQEESKYQLCQLSVDFQFYLHYDNSDVDNWWMVFANWLNHYNIFSNNIRWNIRISRIYPELYHTGKVKNFQEYLNLIFKPLFNAENYLHKSLGPILLKFLSQVSSIDLCIQDTDNYIWKNFTAVSCLPKDWTSGGDNPTISQYMYYVYVNLTKLNHIRQALHQNTFTLRSSCSPTSMNRTSQFSNTLNFTEHTEAILNNFLLACGGFLNAENLWNAPPSLVYLFYLSQIPMVVAPLNSIVDSKPTMLQEQAPTGLVLEPSKPYKKNPFMKFFEMGFKISLSSESILYNNSYTKEPIIEEYSVAASIYRLHSADLCELLRNSVITSGFSSTLKNKWLGVSLASHDYFVENTGFVDKWYDCKPNTSLEHNVPIIRRQYRSSTLAGEWRLIIA", "length": 797 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40002-1", "protein_name": "Transcriptional regulator MIT1", "gene_name": "MIT1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDIEPTFKGYIEDEDDALLILQATLDGKLKHIPRRPYEIERPYLIVSGSIFVFIEEISGIKRWTDGVSWSPSRISGKFLIYKELDKENAGSNANATSSGSTDSAVITDGTSGARNNPSSSKIKLPPLKNHQFDLPPTMGHSSFESEQDTSISPSNRSNLPLKYTGLVKKTISVKLKRPPFNSIENLHIVSYYSVKDIKQNCLVTPKASPFLKDVRPSQELIVAMGNTTLGNVKNNSTTTGNGPNNINNKSNSSTPLNTVISTNNNSANINAAGSNQFTSANKNYYYKNDESSGYPITQFAPALPSTTLMYTANPPYITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNTNAGNGNNPNRFHNASFAYNTTGDFINPQQQGQISYPFYYTTIPINNPNYYTTQPPNPVTNASTNENQGYSTSSTQHPYYGHPTESQSASAAAGATGTPGTAENVLPVSSMQPLLHQANNNSASSATSTAPYPVYSMNVNVPYYNSSASAYKRAQENTTSNTNAEPSGATSTNSGTMLSNPAYANSQYTPSQVYYQGFPQYAMASAQNPSMYQHQHQHPLPTVYPIATPQQNIMSSGHTLSTIGSDPQHHHYQQEPNDHKNFAMGHANNNILNITNNDTMNNLNTNTSTTTQ", "length": 666 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42222-1", "protein_name": "Enolase-related protein 3", "gene_name": "ERR3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSITKVHARTVYDSRGNPTVEVEITTENGLFRAIVPSGASTGIHEAVELRDGNKSEWMGKGVTKAVSNVNSIIGPALIKSDLCVTNQKGIDELMISLDGTSNKSRLGANAILGVSLCVARAAAAQKGITLYKYIAELADARQDPFVIPVPFFNVLNGGAHAGGSLAMQEFKIAPVGAQSFAEAMRMGSEVYHHLKILAKEQYGPSAGNVGDEGGVAPDIDTAEDALDMIVKAINICGYEGRVKVGIDSAPSVFYKDGKYDLNFKEPNSDPSHWLSPAQLAEYYHSLLKKYPIISLEDPYAEDDWSSWSAFLKTVNVQIIADDLTCTNKTRIARAIEEKCANTLLLKLNQIGTLTESIEAANQAFDAGWGVMISHRSGETEDPFIADLVVGLRCGQIKSGALSRSERLAKYNELLRIEEELGDDCIYAGHRFHDGNKL", "length": 437 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43356-1", "protein_name": "Melanoma-associated antigen 2", "gene_name": "MAGEA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQQTASSSSTLVEVTLGEVPAADSPSPPHSPQGASSFSTTINYTLWRQSDEGSSNQEEEGPRMFPDLESEFQAAISRKMVELVHFLLLKYRAREPVTKAEMLESVLRNCQDFFPVIFSKASEYLQLVFGIEVVEVVPISHLYILVTCLGLSYDGLLGDNQVMPKTGLLIIVLAIIAIEGDCAPEEKIWEELSMLEVFEGREDSVFAHPRKLLMQDLVQENYLEYRQVPGSDPACYEFLWGPRALIETSYVKVLHHTLKIGGEPHISYPPLHERALREGEE", "length": 314 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQEAASSSSTLVEVTLGEVPAAESPDPPQSPQGASSLPTTMNYPLWSQSYEDSSNQEEEGPSTFPDLESEFQAALSRKVAELVHFLLLKYRAREPVTKAEMLGSVVGNWQYFFPVIFSKASSSLQLVFGIELMEVDPIGHLYIFATCLGLSYDGLLGDNQIMPKAGLLIIVLAIIAREGDCAPEEKIWEELSVLEVFEGREDSILGDPKKLLTQHFVQENYLEYRQVPGSDPACYEFLWGPRALVETSYVKVLHHMVKISGGPHISYPPLHEWVLREGEE", "length": 314 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43537-1", "protein_name": "Uncharacterized membrane protein YFL067W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MESIILSIAIFIGVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAGSGSSISAGVGSRIGTGIGSRIGTGIGTGIGSRISTSIGSRISPDVGTSSGNRISTGVSTGISTTMNARVAVLITAAILSAPVTAIALLEARR", "length": 175 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46162-1", "protein_name": "Beta-defensin 4", "gene_name": "DEFB4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLAVLFLVLSAGSGFTQRVRNPQSCRWNMGVCIPFLCRVGMRQIGTCFGPRVPCCRR", "length": 63 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P46169-1", "protein_name": "Beta-defensin 11", "gene_name": "DEFB11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLALLFLVLSAGSGISGPLSCRRNGGVCIPIRCPGPMRQIGTCFGRPVKCCRSW", "length": 60 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47102-1", "protein_name": "ARF guanine-nucleotide exchange factor 1", "gene_name": "GEA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MHDVPMETVLAVNPATMIVKECINLCSAMNKQSRDKSQTSVAALLGGGSDIFLSQSDSFVDSFHNLPTSSYHDPLISGLVQLRLKINDLKGLDSLNALELLKPFLEIVSASSVSGYTTSLALDSLQKVFTLKIINKTFNDIQIAVRETVVALTHCRFEASKQISDDSVLLKVVTLLRDIITSSFGDYLSDTIIYDVLQTTLSLACNTQRSEVLRKTAEVTIAGITVKLFTKLKLLDPPTKTEKYINDESYTDNNLKDDIIGTTTSDNDLSSTDDDSAVADDNKNEKPVQQVIREQENDEETAEKAENVEPNYGITVIKDYLGLLLSLVMPENRMKHTTSAMKLSLQLINAAIEISGDKFPLYPRLFSLISDPIFKSVLFIIQSSTQYSLLQATLQLFTSLVVILGDYLPMQIELTLRRIFEILEDTTISGDVSKQKPPAIRELIIEQLSILWIHSPAFFLQLFVNFDCNLDRSDLSIDFIKELTKFSLPAAAVNTSNNIPPICLEGVLSLIENIYNDLQRFDRAEFVKNQKEIDILKQRDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVMPEEHHGNERWFEDAWNNLISSTSVMTEMQRDFTNPISKLAQIDILQYEKAIFSNVRDIILKTLFKIFTVASSDQISLRILDAISKCTFINYYFSFDQSYNDTVLHLGEMTTLAQSSAKAVELDVDSIPLVEIFVEDTGSKISVSNQSIRLGQNFKAQLCTVLYFQIIKEISDPSIVSTRLWNQIVQLILKLFENLLMEPNLPFFTNFHSLLKLPELPLPDPDISIRKAKMSRSLLSTFASYLKGDEEPSEEDIDFSIKAFECVKASHPLSSVFENNQLVSPKMIETLLSSLVIEKTSENSPYFEQELLFLLEISIILISEASYGQEFGALIADHMINISNLDGLSKEAIARLASYKMFLVSRFDNPRDILSDLIEHDFLVKNEIFNTKYYESEWGKQVINDLFTHLNDVKYNERALKNVKFWNFLRILISAKDRQFAVYTFLEKYIQNGDIFVDDGNFMNILSLLDEMSCAGAVGTKWEQNYENSVEDGCEAPESNPYRSIIDLSSRSINITADLLSTVGRSNSALNKNEIIAAIQGLAHQCLNPCDELGMQALQALENILLSRASQLRTEKVAVDNLLETGLLPIFELDEIQDVKMKRITSILSVLSKIFLGQLVEGVTSNETFLRVLNVFNKYVDDPTVERQLQELIISKREIEKE", "length": 1408 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53563-1", "protein_name": "Bcl-2-like protein 1", "gene_name": "Bcl2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEPERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK", "length": 233 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P56840-1", "protein_name": "Protein TCL1B1", "gene_name": "Tcl1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAFDPLGPLPVYLVSVRLGIYEDEHHRVWIVANVETSHSSHGNRRRTHVTVHLWKLIPQQVIPFNPLNYDFLPTTWKLESRNIYWATDGTHWRLLDHSQLGDTEQLILMLVLG", "length": 116 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56841-1", "protein_name": "Protein TCL1B2", "gene_name": "Tcl1b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGFYPPRLLPQVLISTGPGFYEDEHHRLWMVAKLETCSHSPYCNKIETCVTVHLWQMTRYPQEPAPYNPMNYNFLPMTWRLASMNTYRGTDAMHWRLLNHSQVGDTVQLILMLE", "length": 117 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56842-1", "protein_name": "Protein TCL1B3", "gene_name": "Tcl1b3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVHFPWMPFPPRFLVCTRDDIYEDENGRQWVVAKVETSRSPYGSRIETCITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGTDGTYWRLLDHSQMGDTLQLILDIVICEVD", "length": 122 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56844-1", "protein_name": "Protein TCL1B4", "gene_name": "Tcl1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVRFPCMPFPPCFLVCTRDDIYEDEHGRQWVAAKVETSSHSPYCSKIETCVTVHLWQMTTLFQEPSPDSLKTFNFLPRTWRLESRNTYRGADAMHWRLVNHSQFYGTEELVLMLDSR", "length": 120 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59528-1", "protein_name": "Taste receptor type 2 member 123", "gene_name": "Tas2r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSQKINYSHLFTFSITLYVEIVTGILGHGFIALVNIMDWVKRRRISSVDQILTALALTRFIYVLSMLICILLFMLCPHLPRRSEMLSAMGIFWVVNSHFSIWLTTCLGVFYFLKIANFSNSFFLYLKWRVKKVILIIILASLIFLTLHILSLGIYDQFSIAAYVGNMSYSLTDLTQFSSTFLFSNSSNVFLITNSSHVFLPINSLFMLIPFTVSLVAFLMLIFSLWKHHKKMQVNAKQPRDVSTMAHIKALQTVFSFLLLYAIYLLFLIIGILNLGLMEKIVILIFDHISGAVFPISHSFVLILGNSKLRQASLSVLPCLRCQSKDMDTMGL", "length": 333 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61314-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "Rpl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR", "length": 204 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62246-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "Rps15a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62425-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "Rpl7a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62802-1", "protein_name": "Histone H4", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P62963-1", "protein_name": "Profilin-1", "gene_name": "Pfn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGWNAYIDSLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVSITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNVTVTMTAKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY", "length": 140 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62982-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "Rps27a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNKPEDK", "length": 156 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70709-1", "protein_name": "Eosinophil cationic protein", "gene_name": "Rnase3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLKLLESRLCLLLSLGLVLMLASCQPPTPSQWFEIQHIYNRAYPRCNDAMRHRNRFTGHCKDINTFLHTSFASVVGVCGNRNIPCGNRTYRNCHNSRYRVSITFCNLTTPARIYTQCRYQTTRSRKFYTVGCDPRTPRDSPMYPVVPVHLDRIF", "length": 155 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81278-1", "protein_name": "Prolactin-releasing peptide", "gene_name": "Prlh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALKTWLLCLLLLSLVLPGASSRAHQHSMETRTPDINPAWYTGRGIRPVGRFGRRRATPRDVTGLGQLSCLPLDGRTKFSQRG", "length": 83 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83883-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "Rpl36a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83884-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P97876-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like 3", "gene_name": "Batf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQGPPAGGVLQSSVAAPGNQPQSPKDDDRKVRRREKNRVAAQRSRKKQTQKSDKLHEEHESLEQENSVLRREIAKLKEELRHLTEALKEHEKMCPLLLCPMNFVQLRPDPVASWSAHDAPDHPSFIWLGTLV", "length": 133 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEVSAKGTTISKKGFKKAVTKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 127 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01534-1", "protein_name": "Testis-specific Y-encoded protein 1", "gene_name": "TSPY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS", "length": 308 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q03764-1", "protein_name": "Ethanolamine kinase", "gene_name": "EKI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MYTNYSLTSSDAMPRTYLVGTASPEMSKKKRQSANCDKPTRRVIHIIDTNEHSEVDLKNELPITCTNEDGEMTSSSWTSQTANDFLKLAYVNAKLDPSLPSQYFKQDIINVLQSLEIPGWSVPGSKESSLNKNLLTLTQIKGALTNVIYKIHYPNLPPLLMRIFGDSIDSVIDREYELKVIARLSFYDLGPKLEGFFENGRFEKYIEGSRTSTQADFIDRDTSIKIAKKLKELHCTVPLTHKEITDQPSCWTTFDQWIKLIDSHKEWVSNNVNISENLRCSSWNFFLKSFKNYKRWLYNDSAFTSKLLREDDKDSMINSGLKMVFCHNDLQHGNLLFKSKGKDDISVGDLTIIDFEYAGPNPVVFDLSNHLNEWMQDYNDVQSFKSHIDKYPKEEDILVFAQSYINHMNENHVKIASQEVRILYNLIIEWRPCTQLFWCLWALLQSGRLPQRPLIEGEKLMSEKAGLGDETHLMEHKNKENGKYDCSEDDSFNYLGFCKEKMSVFWGDLITLGVIDKDCPDIGKTDYLDTKLIF", "length": 534 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04902-1", "protein_name": "Probable glutathione-independent glyoxalase SNO4", "gene_name": "SNO4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKIFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNRAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYS", "length": 237 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0D2J5-1", "protein_name": "Zinc finger protein 763", "gene_name": "ZNF763", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPVACEDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSIGKKWKDQNIEYEYQNPRRNFRSLIEGNVNEIKEDSHCGETFTQVPDDRLNFQEKKASPEAKSCDNFVCGEVGIGNSSFNMNIRGDIGHKAYEYQDYAPKPYKCQQPKKAFRYHPSFRTQERNHTGEKPYACKECGKTFISHSGIRRRMVMHSGDGPYKCKFCGKAVHCLRLYLIHERTHTGEKPYECKQCVKSFSYSATHRIHERTHTGEKPYECQQCGKAFHSSSSFQAHKRTHTGGKPYECKQCGKSFSWCHSFQIHERTHTGEKPCECSKCNKAFRSYRSYLRHKRSHTGEKPYQCKECRKAFTYPSSLRRHERTHSAKKPYECKQCGKALSYKFSNTPKNALWRKTL", "length": 394 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0WX57-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 24", "gene_name": "USP17L30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LYG5-1", "protein_name": "Elongation factor 2a.1", "gene_name": "eef2a.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MENFNVDQIRATMDKKSNIRNMSVIGAFDHGKSTLTDWLVSEAGIVSSARAGETRFMDTRRDEQERCITIKSTAISIFYELAEKDLAFIKECKDGSGFLLNLIDSPGHVDFSSEVTAALRITDGALLVVDCVSGVCLQTETVLRQAIGERIKPVLMINKMDRALLELQLVPEELYQIFQRIVEKVNVTISTYAEDEKGPMGNVMIDPVIGNLAFGSGLHGWAFTLKQFAELYVKKFAGKAQLGPEEYIKKVEDMIKRLWGDSYFDSTTGKFSESATSPDGKKLPRTFVHLVLDPIFKVFDAIMNFKKEETVKLIEKMGIKLDVEDKEKEGKILLKAVMRCWLPAGEALLQMITIHLPSPVTAQIYRCELLYEGPGDDEAAMGIKNCDPKAPLMMYISKMIPTSDKGCFYAFGRVFSGCVSTGLNVRIMGPNFTPGKKDDLYLKPIQRTVLMMGRYVEPIEDVPCGNIVGLLGVDQFLVKTGTITTFTKAYNMRVMKFSVSPVVRVSVEVMDPADLPKLVEGLKHLAKSDPMLQCIIEDTGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPFASYRETVSDGSKQLCLAKTPNKHSRLFMKACPLADGLAEDIDKGRVTASQEMNARAQYLAENYKWEVTEARKIWCFGPEGTGPNILVDLTKRVQYLNEIKDSVIAGFQWATREGVLCAENMRGIRFDIHDATLTSTAIHRGPGQIIVATRRVLYGCQLTAEPRLSEPIYLVEMQCPESVIGNVYGELVRRRGVVFSESQVMGTPVYLLKAYLPVSESFGFTADLCANTSGQAFSQCVFDHWQILPGDPMDPTSKVAHIMADIRKSKGLDEAIPALHCYLD", "length": 854 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1PEY5-1", "protein_name": "Probable 3-hydroxyisobutyryl-CoA hydrolase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERVEDEEGWEDLKFPPRNNLPALAIAAKL", "length": 378 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1ZXA5-1", "protein_name": "ADP-ribosylation factor-like protein DDB_G0292332", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDFIISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETILMSQNNNDDLIKCINWIFSN", "length": 186 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q1ZXJ4-1", "protein_name": "Acetyl-coenzyme A transporter 1", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHKHATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFIETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYASTCQTIGLNTGYFLSYTIFLTLSSPKFANKFLRSVPSEEGIITLPGYLQFWGILFIILSIYLAFFKDEESTTITTTTTRHDNYNNNNNDDKNKQVKSKIENESIESKSMRSSPSSLSPSLLSSPVKKQNKKNKQHISIDKKDITIIKENNENNEIIDNNNSNNNYDNGKKSIVQETYGMDISESDLTPKQVYYLLWKIITLPHIKILSILFIISKIVFQPNESALNLKLLEKGLRKEDIASFSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEISWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLFILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNISKELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL", "length": 618 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q23888-1", "protein_name": "Large ribosomal subunit protein uL2m", "gene_name": "mrpl2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVLNWRGVKSRLYSGKRRIDGRNKGLIAIRSRGGALKRKYRYIEHYKQKWMDKWLFVMRIEYDPNRSAHIALCSILKEGIYFYVISIAKLEVGSLIITSALKLGTLQVGNTTKIKNIPEGLLINNIELIENSGSKISRAAGTSSLIIKKYNKKYSLVKLSSKECRLISNECYATIGTVSNIERKLKQNKKASYSRKRGIRPIVRGLAMNPVDHPHGGRTKGGVHWKSFSGKLAYNVSSRKKTKMTSRYIIIGHRKQKIMDKQIKNG", "length": 266 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q24113-1", "protein_name": "Protein no-on-transient A", "gene_name": "nonA-l", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEGAVKKNSLNSSPLPQRQQRGNSTNKNLGKPTPPKLNAASDGNPAEKKARLGGNTQNGGGVAGGGGTGGGGGGGGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQKQINESPKPAAGNVPAKNNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGPNFRGRGGGPNQPNQNANQEQSNGYPGNQGDNKGGQGQRGAGGGKHQRGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAPNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRYQNQLLRHEEDMRARQQENDLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGNNSNNSTMAGPGGPDNSDGNQHGHIDSWGHRRF", "length": 630 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2PRK7-1", "protein_name": "Odorant receptor 106-10", "gene_name": "or80a10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANETFVKNVDSFIITGFDHLQNQKLLGSLILISYMFILLGNGINLCIISTDRHLHKPMYILICNLAVVDIMYSSTCSTTMISVLLAEIKTVSYYSCISRTYFFNLGDLTECMALTLMAIDRLIAINLPLRYHSFVTNSRILWLIFLTWIFSFAVIGFLTYVADTLPYCQPIIKYVFCSYSSLVRAACVDPEPYFAISTVYSMVTLCGLFPFILCTYAVLAYSVTKLANSSRKQMINTCLSHIIVLFSFYLPKIVYILLTRIGLVLTLTERNAVLIVSCFVSLLVNPTVYCIRTKGIRKRITDIFLYTQKITK", "length": 313 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ5-1", "protein_name": "Uncharacterized protein CXorf66 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIVIGTLITGYMVSCTCLLHYSCDSEEAHTAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKPVSQVSPSYPEKAIKSTWPPSLQCRAKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSRNN", "length": 361 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3L180-1", "protein_name": "Alpha-defensin 26", "gene_name": "Defa26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALFLLAFQVQADPIQNTDEETNTEVQPQEEDQAVSVSFGNPEGSDLQEESLRDLGCYCRKRGCTRRERINGTCRKGHLMYTLCCL", "length": 93 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TR54-1", "protein_name": "Gasdermin-C4", "gene_name": "Gsdmc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDKLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKKMTFPDRPLKLYDLPVTLRYQEEVIETGSWIDDIDPIGTIEEPANLNFMCLQHEVSEQTQLLAELSKDVQEVVFSSFLHMLSDRDVLYDLMKMLELNQLGHMDGPGGKILDELRKDSSTPHDVLKDLNLYLLQALLVLSDTQLCLLAQSVKMGLLPHQVELVKSILQTNFKYSSNTPFTLQPQLLAPLQGEGLAITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLQKANSSSKPSLSPGYI", "length": 480 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U0I6-1", "protein_name": "Endoregulin", "gene_name": "Erln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQMVPPRSIQNEDFWKNPWDVGGLTVIGLFTSTFLLFVLFAVVFGYVEKAVFEEE", "length": 56 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URS2-1", "protein_name": "Zinc finger and SCAN domain containing protein 4F", "gene_name": "Zscan4f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIMQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3ZCQ0-1", "protein_name": "Required for drug-induced death protein 1", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVGARLRSKASSLVGRGPLGRLRRAGDEETDAIVEHLEGEDEDPESQDCEREEDGRRAGTPSARRVHLAALPERYDSLEEPAPGDKPKKRYRRKLKKYGKNVGKAISKGCRYIVIGLQGFAAAYSAPFGVATSVVSFVR", "length": 140 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI3-1", "protein_name": "Defensin alpha 3", "gene_name": "Defa3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTLTLLTTLLLLALHTQAESPQGCTEDQKLLIMEDQDISISFTGDKGTALQDADVKSGVICNCRPRGCSFKERVYGECGYNGHILRLCCQPLNTMNKKSPSVI", "length": 104 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI6-1", "protein_name": "Defensin alpha 8", "gene_name": "Defa8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKTLVLLSALVLLAFQVQADHIQEAEEETKTEEQPADEDQDMSVSFEGPEASALQNLEIGWPLKQCHCRKFCRPYEKAEGSCRPGLFIKRKICCIQQWTPGRT", "length": 103 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4KL71-1", "protein_name": "Small proline-rich protein 2A3", "gene_name": "Sprr2a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q504N7-1", "protein_name": "Pyrin and HIN domain-containing protein 1-like", "gene_name": "Ifi214", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNKMQDEYDRVKIADLMEDKFPKDAGVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNEDAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQTSSRSSETLQSIIQSPETPTRSSSRILDPPVSLGTAYSSAQALGVLLATPAKRQRLKNVPKEPSEENGYQQGSKKVMVLKVTEPFAYDMKGEKMFHATVATETEFFRVKVFDIVLKEKFIPNKVLTISNYVGCNGFINIYSASSVSEVNDGEPMNIPLSLRKSANRTPKINYLCSKRRGIFVNGVFTVCKKEERGYYICYEIGDDTGMMEVEVYGRLTNIACNPGDKLRLML", "length": 393 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54B59-1", "protein_name": "O-methyltransferase 12", "gene_name": "omt12", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDWDKTMDLLFGFVTGHIHSRMFETILKFSICDLLEDGPKHYSEISKIIGFKNESYCYRLMRYFVPYKLFNESVVQVGLFSKTPSSTQFSKNGTLKNLGRFHCQDHHYRIFESLPKTLEMGKNQGPSSIGLSSFWEHFETDESYKQLFHNAMKDYTSLIIDRLISKISLSPNFKTVVDIGGSHGFLIGKLLESNPNIHGINFDLENIINSSTSKNENFQHPRLKHVSGDFFNSVPEADCYILKYILHDWSDEKCITILNNIHKSLKPNGKLFINDLVLDPSNYTKEAVFKDILMMQYFDAKERSINEWHQLFEKCGFKIDSVDTSISPQLMIVSKINSSNINLNDCTNFNSEIVEEKLKNSLPQFVNC", "length": 369 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B60-1", "protein_name": "Probable inactive O-methyltransferase 11", "gene_name": "omt11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MECSESLELVDKFACGHILSRMFNVVMKHSICDLLEDGPKHYSEISKIIGFKDDSYCYRLMRYFVPRKLFKESVVQVGVFSKTPFSTEFSNNGTLKKLAKFHCNSFHYKLSQVLPETLEIGENQGPSSIGLSDYWEQIEKNEIYKNEFNDGMIGYTTHILKFLKGKIDLSKFETVVDIGGSHGYLIGSLLDRYPNVNGINFDTDMVINSSNEKYQHPRLKHVAGDFFKSVPEADCYLMKLILRCFSDEKCCELLKIISKSMKSNAKIIILDIILDSSKYLNFDTYLDILMMETLDGKQRSLSEWIKLFEMSGFKIDKYESGSPNYLIISKE", "length": 331 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B86-1", "protein_name": "Hly-III related family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPRLDHKKNKEEKDNEPLMMVNNYNIGIQTDNNQEDIQNDYHHFNDLSINIKNNKNNNNNNNKCNSLHHKHYHNRFIINGGNNNNDNNNNNNGDDCCANIELFVDLMLSENEYILSGFRLHTKNSYMECTKSIFKLHNDTLNIWSHLLGALFYLVLFFTSIIKIIKLNNNDGGGGGGIGNNFILNSDEIKLLETIDLPSNFNYLFFQLSCFICFLSSTIYHTYRSHSIVVFKTTLMLDVASIALLILSSVCLIIDSELSCWPYFKRIYLFSFLILILISFLSLPKIMREKRYGLRTFLFAILALQGLVGHLFKIYLQGYFDKDPNQFYNLIGAYTLFGLALSIRRFKVPESFKPGHFDVWVNITFNIVYNII", "length": 372 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54BG8-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGKIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54C66-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKTKKYKNPFPTNSYKEPENDSDNEYILHNEEDNEDYGSNNNNINNDGFSYEDNIENSDTEDEREDYGYINYNTNNEEDDEPIDLSTPIKKKKANNKSFKPPYKNTTTTTTTTTTTPPTPPPSKSNNNNNNNNNNNNNNNNNKNKENINKESEYELNKFLDLYNDFKSESDNKVKPTATTTTTTTTTTSTSTSKLNKDKKGVIVIESDEEKEDNTIKINKRNGKRKEGEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGNEDNLKSENFNKFKKLKSFSNQPTPLPPMLSNPFLNNSGNSHNNNNNRILFNSQFTNASNLNNNINNNINNNINNNINNNINNNINNRNNNTNNYTNNNNNNNNNNNNTNNNNSNNNINNNNYNNNNNNSFSFLPIRSNTLPTIVTRRTGIQSSSSDNGNSNSNHSSSMNKRNTSKSNNKKSTTTTKTVLPPPLSSRTQEEEDYALALSISEGLNGGSGGGSGSGSGSSDNSTKTKRSKSENDLPNEETRHQVEMDRRFAEQLHREQHENINQIQQLQRRLHLNQQRTNNINRNHHGDEDEEDIEMLNLRAYQQIQQQFNQHFNQQLNQLANHPLANLFSHASRGRGRGARRIPHHPHHHHHPHQAQYLTGLSQEQLNLMTRDFSSNDYELLLQLDENINNKGATTSDIENLPVHTLNKPTATTTSTTTTTNSSTSDDNKKNEPTTDVTCCICLCEMEPGDAVRTLPCKHFFHVSCIDQWLKVNKVCPIDKKAIDEK", "length": 766 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54CY8-1", "protein_name": "Obg-like ATPase homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKGIKLFNNFTNTKQILFFRSFSTAAKGDRLKASHYVKTRGSCKSISIVGLPNIGKSTFFNALTSSNAAMAANFPFCTIDPNIGKVFVPDERLDYISDLLKTKSKIGVQLEFVDVAGLIKGAADGEGLGNKFLGNIRQTSLICHLVRCFEDKGITHVSDEIDPIRDIETIETELILADLQSLEKMLTEGKKKQSNPELQMKFDLVKRISEYLHKGLPARDVEITDMEWPVFHSLHLLTSKPTIYTCNVAEGDAATGNKYTDLVKEYSKSKGLEIEPVVISAKIESELANMEGNDETKKEFLQLYGLENNGLSKVINGAYKLLGLQSYYTASSNECHAWTFKAGWTAPKAAGVIHSDFEKGFIKCDTISYNDFIECKGDEKIAKEKGKQRSEGKAYIVNDGDILFFKFN", "length": 409 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54D44-1", "protein_name": "Probable polyketide synthase 42", "gene_name": "pks42", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIESQREFNCIGGDNQNGVAVIGVGFKIPLDLENCLSSPSELYSALFNEFDSVTKNTSSRWSDNYFKNGDIVSLSAGLLPLREIKSFDPTFFGINPSDADLIDPQQRLLLKCVWNALEDGGIDPISIRSSDTSVYIGCSTIDYFLLNRNPVDPHNHGIQTASYSIPNRISYCFDFRGESLFVDTACSSSLNAVHLGYNSIINLKSKLSIVGGSNLILDPQNSIFFSKQQVNGPSGKCNSFSEEADGFVRSETVGVVVLKNLKDAIKDGDRIYCVIQGSNSNVDGNYEKLNYISPSKLSQAENITKALKSTNGAVNASDIDYFECHGTGTPTGDPIELEGISIALNRTQQSTTLSNPLLIGSIKSNIGHGEASSGIASLIKCCVMFKYRQFLPNINFKTPNPLIKFKEWNLKVVTEPVPFNNNKQTIMAINNFGVSGSNCCIILSEYKSNNNNNNDFKATTHLKSKKFIIPFSSNSSTSLDNYKSLLSNETNNFQDFVIKQINNKSTSLIQRSVIIASNWSEFNESSNEIQSNIKKSIISNITIKKKNAVTVFVFCGQGSQYNKMALSLYENEHIFKSTMDKLDKELSKHYGYSILEKLRSITDEDLVTIHQPILAIPVNVMVQVSLYELYKHWGIKSDIMVGHSFGEIACSYCSGMVDFKTLCYLTYHRSVAQNKTIGSGKMLSINIGAKEYLDSYSTKYPSVEIACYNSETSIVIAGNEELLNEISKDLKSKDIFTAMLPSLSAFHTTHQSVIKDDICSLNFKSTLSKITVFSTVTSNQFGINNNNNNNNNQLNSNYLFQNVIQPVKFSETISNIYKYIESNDMGNEITFIEIAPHPTLQYYLNQMKSQQSEYFNNGEKISIYSACNKKKNDYNEFLKTISTLFVNGYNNINFKSQIINNNNNDNNNNFNLPLYQWDDNEYYKIHPTWKKANKNGPSINHLGNLNDSSIKSFKTYINTRKPQFQWLKGHSLKGKVVFPGMGYISNLLSVYNMNQDITINEIQFKSAFILVDGVNNCLETSIVPLTKNEFNIKFHFKDLKTNKWVLCANANYSLFKHNDNNDKLDIEKLKSNCNYTIISKDELYNNIRAKSGLIYKGLFQGVKEAFIGNRCSLTVLSLNEIENQQEFKHLLENRNFNSLFNTAILDSCLHGSLHSKEQSQIYFDKCEGFKYYSNNINLATSKRNEYKEINVYIETNPVINSTVIVSLKIMLPDGTLLIEIQKVVCKSSIPIIDSTSVIQPSPKDLHTPYYQPKNSLIKPPQSFKHLHCMKEFASIESDNREMVYMSIYHLIFKAINARSPTKINLESLENLTLDQFKELIKDSAANIQRSNQFIYECLKLYHTNHSNYKKNQIKDFIKECEDFNGYNQIIFKTIKIYAKSLFPLPDDDPFTDTIQSLFEDDQLENVYIHLKHLYPVNNLLSEIVFQSIKPIINQTSTFRILEIGAGYGTISQLIFDKLEQLLADNFTSSRIDIEYTFTDISNTFLPRAKERYSKYKRFNIIYKLLDLELPLTEGIQDFRPLYYDIVVMSNVLHVVKDINFSTNEIYKVLKQNGQLIFVEPTYKNLYLDTIFGIFPQWWSFNDDIRTDRCCLEPSKWFEFLETINFKDTIILGQDNKEILKNVENSIILVQTRKPSQLELSINNSPSTNQFKSFENIILYTDDNQQPNDCSEIIDLLKSLELPIKIINNIDQFNQIIKTQYNNNNNNNNNNNNNNNNNNNNTNNNLIIFLKSVNQLNTNNYKDITFEYVQINQILVKLELEENYKLLLITNNSQSSNYLSNSLIGTSRYLFADIVSSKLDIITIDFDTVSIKNHQNVISVINHLLDSKDNSEREYYIINNEINIERYKNESNIKHQLKSKTFQENKDELMVQLDSNLEYRLKSKSKQELKSTHVEIQVKAIGINYKDYATYSGLIDSIIEIDKDKEKDENYDQNYPSIGNDFSGVITRIGSDVRKFKVGDEVCGLAPKTSASHIITEEGYLCKKPSNISHSEAASSVTVYTTSFQSIYSIGDLKKNETILIHSGSGGIGLSALEILKWKNHQGYIFATVGSEDKVKYLTDTYGSFITGIYSSRDKDYQDQIKEKLKSLGCDIDHQGVDLILNTLSVEYMDSNFKCLNQKGRCIDLSITHLTPFDYMDYNKFKFNVSYGNIELVVLPSKIIKDHLKKMLKAFSLGSLRFIPIVEFSNLNIRNAVEYINQRKHIGKIVVKNDVDFINKLFIEQQQQQNSVENNEILMKDKYDISNLELGKNILLTGQTGIILTILKWLYKHSNNSIENIIIISKSKLKWELELFINESTNNRIKIHYKQADVGNNNELNQCFEELRLRHSIEDINSIFHFAFINDIGQFEDVNMNRMDIAHHAKAIGSLNLHNQSIERKWNIKQFVLASSALSVFGGDNQCCYISACSVLDSLSKYRKSIGLPSLSINFGGVTSTGFVSRSGAVEANLESSIINLITPQSLISSLDLFIQNSQTFSNYTHFNFIYDNIESYSLNRMLFKFDYLINQHSSLVSNKRLGGINENNNIGDLLVSKIGELLSIEPSKLNLDFRLVDYGLDSLVIVQLKNFIDKQFQPHLISILQLQNNKISTTIEIIIKGYNNNQNKKIKNEQSNDIPSVVQKETIKDNNENKDDIKIDMDDKKENLKGKKENIDDKKENNN", "length": 2655 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54E06-1", "protein_name": "Transmembrane protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTIINNDNISLATSAKLSQFIVSGDYKGPFTIIGLKTKILSFSLVIEFILLKIELIKERKDGLKINFDDSISGSCNYELNYTKQDTLFQRFQSKFKIEHTINPENGETINTGITLKKLFIISIPMSILFVALNWIWMLAISMTEVSISTALYLKILKTISVIIFMGGIVGIAITTVGTSKGEYPHAIKGEILMIISAAMWGLYEVLTSKFIGDANRTIVHTYMGLIAFVNLILGIPVIVILNVTNFEPFSVPSISVFGMLLLNAFVGFSVNYLINWGLSVTSPLFVRSGELMVIVATLLFDIIIKHMKLPLLALPGYSLIVIGFILSVYIESRDIKQQQEKEKEKQKNNNGETESLLNY", "length": 359 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EC9-1", "protein_name": "DUF781 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKIILIFFLINNIFSIVVSSTKLNPWVFEERIKLYDILINSTKVEIFGDDNLNNCFQGFKIQLEWQKTTGRSMIIDNSNISVNSWWGSMNYYESIIPFISAMNLGIIQPPIELVNIGDDRFCTDYSECDKELMEPWDLYFQFLIKIKDEKYSYSIQQQILKYNWDGHMKSLSIGLKLFNDKLNYLSKNEIKFSTGFVHFVDIISLINFNTNYSQILPIFDSLPPRMLTNSDHPPFFKGFTRTQNFYTVSVLSINELHENQILWNYFLNLLKTKTENEKCRDFINQEIINFTKYPESTLVKLLLKLLLNNC", "length": 312 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED6-1", "protein_name": "Probable polyketide synthase 41", "gene_name": "pks41", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDSKNLVDENCNKVAIIGIGFRFPNLKGDITPNELWSKLLNRYDGIVKNDRWNESFFKSGDISTNYAGFIPFEELKSFDPLFFGINPSEGIHMCPQQRLLLKCTWEALEDSGIDPIEIRGSNTSVFIGCSGADYQNLNKNDNKVQQEIFSSSTHSISNRVSYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNISKSYSRLNILSKDGKCKSFDAGADGYVRSDAAGIAILKNLNDAIKDDNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGQVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSDNPLLIGSFKPNIGHTESASGISSLIKCCLILKNQCFVPNLNFNKPNPLIKFDQWNLKVVTDPIDFSTLNYINKRVSIAINNFGVTGSNCCLIVSSFKGNQIRNNINNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVVIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNVTMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLNEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKKDGVFCAILGSPTSFHTSSQLSVKDEILKISFKSKQPTIPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEVIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSDHNNTNNQTRVNLPLYQWEDQEYWKLDNLHQYHLSNGPSINHLGISNSNHTPIKSYQTHINIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGESKTDTNPNKELPDILISFIEFKTPLIFMDGISQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGPNLNEDDEQSLFMYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVDKCYLGYNCSLSEISIIQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEELTYYSSKVPKTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDPLAMEYPTNEIYSCNLQSKDSLIPSLSSFDHIFKRKIPNEYVDQINIYESFIPKLLFSNINKRCPEITIDEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRFNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIIGDGIFGVFDQWWSFQDTEIRKDRCCMKQKTWYKLLKSVNFNDDIRMTPELTCFVIQAQKPSISNLSFSKSETTNYDSIIVFGNKYASNLSNHFIKSIDNGNLQFISTIEELNKIGKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNCKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITRISTGSKEFKVGDHVYGIGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITHYSIEKVKESIEFINERVHMGKIIINHENQDSIINELIEKQKSINKFDQSIFKQNYKLEPSLLGRNILLTGQSGIVLEILKWILRNSENNSIGNIIILSKSSIKWEMEYLINKVKLINKLGNFFNNIKFHFKSVDISDSGLIDESINKLLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKLKNFIMSSSVSSKTSTANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIESTGFVSRNESVAALLSGEGFIPISANLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISEILSTDILKLNKDIILVDYGIDSLVIIQLKNWVDKEFSIPNELTIQKIQNSTINSFIQLVKNSMDKNKK", "length": 2542 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED7-1", "protein_name": "Probable polyketide synthase 40", "gene_name": "pks40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDYKNKYQSNENCNKVAIIGIGFRFPNLKGDLTPNGLWSQLLNKYDGIVKNDRWNESFYKTGDIPTKYAGLIPFEELKSFDPLFFGINPSEVIHMCPQQRILLKCTWEALEDSGIDPIEIRDSNTSVFLGCSNFDYQNLNKNNNKIQQNIFASSSHSVSNRISYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNTSKSYSQLNMLGKDGKCKTFDADADGYVRSESAGIAILKNLNDAIKDGNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGGVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSNNPLLIGSFKPNIGHSECASGISSLIKCCLILKNQCFVPNINYNKPNPNIKFNQWNLKVVTDPIDFSTLKLSNKPISIAINNFGVTGSNCCLIVSSFKGNQTNNNNNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVAIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNATMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLSEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKQDGVFCTILGSPTSFHTSSQIPVKDEILKISFKSKQSTYPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEIIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSNLNENDNIQTSLSLPLYQWEEQEYWKLDSLYQHHLSNGPSINHLGISNSNHTPYIKSYQTHIDIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGDNSESTTNPNKELPDILISFIEFKTPLIFMDGVNQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGQGLNEDDEESLFKYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVEKCYFGNNCSLSELSLSQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEGLTYYSSKVPTTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDSLAMEYPTNEIYSCYLQSKDSLIPSLSSFDHIFKRKITDEYVDQIKIYESFIPKLLFSNINKRCPEITIAEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRVNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIVGDGIFGVFDQWWSFQDTEIRKDRCCMNQQTWYKLLKSVNFNDDIKMTPELTCFVIQAQKPSISNLSFSKSETTNYNNIIVFGNKDDSNLSNNFIKSIDNGNLQFISTIEEFNKMTKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNSKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITNIGSGNKEFKVGDSVYGTGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITEYSIENVKDSIEFINERVHMGKIVVDHENQDSIINELIEKQKSIDKFDQSIFKQNYKLEPSLLGKNILITGQSGIVLEILKWILRNSENNSIDNIIILSKSSIKWEMELLINKTKLLNSNSINSMGNYLNKIKFHFKSVDISDSGLTDKGIHELLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKIINFIMSSSITSKTSSANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIQSTGFVSRNESVAALLSGEGLLPISTNLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISELLSTDILKLNKDIILVDYGVDSLVIIQLKNWVDKEFSIPNALTIQQVQNSTINSFIQLVKNSIDKKNKK", "length": 2552 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EN3-1", "protein_name": "Alkyl transferase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNCSNNSENCNINDNKKKEENVKNQNSNKNSNNNNNKSNIESIILNKKSKFSSEKELDEKENKDLKDLSNNKPINIDEYEGLPRFENEQNARSKSSLWSKLCDWMYDQNFKIASSTLKNGPIPKHIGVIMDGNRRFAERNHLETKEGHKKGFNTMLDLCQWGLTLGVKIISVYAFSIENFKRSKSEVQDLMELANNKFTEMISKSHKLQQLGVRIRVVGDHSHIPEKTKSILAKAVKSTENNTKALLNICLSYTSHEEILHSMKILSKGVNQEKKIEIEDIDQDLFENCLYIKEDLDILIRTSGEYRLSDFMLWQSCFTNLALVNTLWPDFSFFHFIYIIFLYQFNSKTLKNEIQNQYKFNNNNNNNTDNNNNLKENIKNLKSDQRVKEFINHLKISEEKLFDEFISKYNEEEEEEEEI", "length": 420 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54F52-1", "protein_name": "Saposin B domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLIFIVCLLLIFNYFIGISFGNKQINSNQQQQIINTDKNYNHNKNNKIIVSHNKNNNNNNNYNEIETENLGCTFCKYLTEKVEEYLQANSTEKEIISYLDEECELLNSPNLVLTCQNLVQQYTPIVIELIDNNESPSVICENVNICPTSSSSSSSSSIEEEIIKKLNIDDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEEEEVNTCEICNLVSNLIEKYIKINNEVDEIRELIENECELLSNSKVSSCYSLVDQYFEHFYVTIENNYSANEICQLFQFCPIESSSSSSSSDIINNIPLQDSGCTVCTVLANYAYKVQANESIPEIIGSMDEICNKIGAWRDICNSIMRSGGQQLVEDIVNKGEGVYTACSNIGYCQSSSSATGTSGFSSGGSGTSTGGGYSTGDFYYKPLK", "length": 416 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54GT5-1", "protein_name": "Endoplasmic reticulum junction formation protein lunapark", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLFSKKNGFEKQLLDMETKILNLEDKLSNSRIFHQKVLHKIVLYSFAIEFFIILFTYVKSRSLESIPEKLFCCIYLVLFPIFILILTKVYGFVYKYLIKKNEVRLDSLKTGLQKKLDERKRETDYENTQKLLDRYEKNPPSPTNKPLGPPNLNNNNNNNNNNNNNNNNNNNNNNNNTLGNSMRNRNQPFNISSQQNQQQQRMIQPQQLSPQQLQLLQQQQRLSQQIVPSQQQQSQSQPQQQQPILNQPYNINNNNNNNKPPPPIQLPPQQSSQYIGNQQRLPPQQYQNEQKSKWWLDKLVDYLISDGPTHGSPLICSNCHSHNGYVPVEELSNIQFRCRVCKTFNQRDSVNNSTTNDDRNNSQNTGSNQQQSQSLQDQQPSIEEIDKNFSVTEQKNETNNENYSDSEKQLEENNNNNNIDNDSGSSSSQNTPNKKKGKGKGKGTPTKKTN", "length": 452 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H60-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLDFFHLKDVDEFFRLLEKKNLQNLDNQIDGPGNLNWRTTYTEKDFSKVPKFRGIIHIVQIRDLGTKIHRDLLYEIMFEKLLDIARLNNESKLLKNEIQDLKTKLDEYHNNNSTTNTDLIINSFINVIDTTTTTTTTKTTMGATSIDKKQSEGDSIDKSIELDFFKIKSDQSQQSSPSHKLEEKQNQVNNITNEIPQESIKTVKQQTQTETNQQTFSSTSPSHQNEEKQDKQEEVKQEEVKQKEGIQKEDKKEEDKKEEGKQKYGEIFIIEIPQEEEKQKEEGKQQDGENFIIEIPQEEDKQKEDKKEEDKKEDKQEEDKQKEEKLEDKQKNGEEFIIEIPQNETLEIKVDTHPRSSNDDVSTAEMEVEALKTPLFAETTFVTKQQVITNKKLLVYKQSDFFPNMTTLLQSRLKDVTVQEVKDLTKIGLNDNSYSVGDFENVFVLYAVSCMGARTDSERDAFKIKSIRSIIGDKVPIIYGVFMIGKNGPTRIKVEHTQTSISITHSMSDIGRNLQNNENLKQLQSFLQQ", "length": 529 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H72-1", "protein_name": "Tudor domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNIDFEDYEFYDDSDFEINTVDESVMTYSSVFDFLRFGKIPKFDTQTKMKHFKDNISKYRIESKDILHTNVDSKILRRLSEIPRVEKIFPDPNTLQLEVFKPNHELRNSNGELLSKHRPLQETLKLIEKQYYWECKFIHTSMEVDITKLYSFCDLCSQSSVSRDMDIDSNDEDKILEQMDIVEKSFSNDRNNNNNNDDNNKSIDEKDKMNICGIGIDLEAIKEGKLFEDELAEALGFPEYNSSVDNSFNSSVNNSNLNNSSLNNSLNNSKNNNNNDDDNNNNNNNNNDDNNNNNNNNNNNNNIISNIDNNNNNNNNNNNISNIDNSNNNNNNNNNNNNPVNDDFSFIIPKDYQSKNHLNDNENKDDEKDDDKDDDKDDDKDDKDDDKDDDKDDDKDDSKDNGYIKTNVSLSSSSSSDNERDDGDSHSDKSVDNDENNNNNINNIISDCNNNNNNNNNNNKINGRTFTSRRTRSDSNTSNSSVGSYISNSSKSSANSYDFSSSDQDYKSPNSPTVKKTRGASLVNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNSILKPKLKSKRASASTAINSFISQFITPKHPPKSSSRLKRANRSNDSSDSGDSSSNNSSRSSSDSSDNENNNSYYLPIQSRRSTSKQILKDHLKSPTKKPRRIIEEDFYHVEEKKSPTSKISTPISRSASYNFGRSSPGSSPGSSPSLSPYSSPPQSPPHVYNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNNNNNNNIRSILKSPQSPSISPIKTPRRSPQQQQQLQLQLQNYIPMPTKTKTPTKAPYVPNYALAPIEPKPTQKTPVHVFGGNQLSVKKRQTIEDMITEVLKMNVDTAALKLPLPKVGQHVEGKSNMEDYKDAWFKGVVKEVLPNDFFLISYIDGGEEELSYTRLKPNLTSELEPLKLEEIVVGGEYLGSYRNFYYNVYVLEILRHSIRVYFADLEMAKTIKYSQLYLLSSFVKR", "length": 998 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54HE0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 5", "gene_name": "cog5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNNNNNNEGVSSSSSSSSSPLPNISSPNLISNSNIENDIEIKKKSNNNNNNIFEGDNSHIYNQFLGEDFNVVHYTSNALKVSSISLSLNTLTSCTRELGQELTENITTNYDDLFKLANNIKELDQLTDTLKLGVSNLEESIQRMKNDISEPYNKVKSHIGQLKRVQDSCELLRKLIRYIQLVKKLKNHLQAGSRDLSKSAQCINEINLLKKDSDLTGINIIDSQVVWIKTCSDQIITISSTLLYQGMENQNQTDVANSLQVFHNMTILNEKVYSIVNLTTEKVIKNIKALLNVNKLIADLPKTTITNNINNNNSNNNITTNNNNNNYNNNNNNNNNNNIISTSTDKSIWLKFESLIDTLYSSLIQILHLQRVLLKIKDPLTHKSLMEVLLIKQHQLQQQQQQQQQQQQQQQQQQQQQQQQQQQVGTTSNNTQPILIEMISTLFWKSILKVLENNLLVAAKSSNIIENTFIREYPKVSKFFLDFIKKLQNYIDIHQMDIQQQFMIVLSNINQIIGNNNSNNSNSNSNNSIESSLSTSSSSSSSSSSSSSTTTTATTSLILLSADDYKLSLFKSIGLFEKAYLEYSQSKMSTIVNGLFPQSTWSSRSTLPVIPNGKQLVDLSKTIWSEIEWLVGNNDRQLLGKLMLVVSKVIDLFSSKIESMVQPPGLIVLNSNIGSSSSTGGVNNNSNSNNNNEIITINENSKPTPSQTVNTLLFNVSIQLNSSIQSLLTSQPLERESIIVIEKSLNSLITICTNIITPLMNSFFTHIEQIFSTIHNEDWYNEKTTKMLINKSNQTCSSYMESFKTLVNYFQNQYLMRFTPCQLLNNQIKSMISKIFIVYLKYCSLLKQPFSENGKLKMVNDLTHLEFAVTPLLVSGGIKEIGESYNLIRNYKQSIFN", "length": 898 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54IX3-1", "protein_name": "Probable polyketide synthase 26", "gene_name": "pks26", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METNNNKNIQEDIAIIGFRIPGCQDNTPSELWNNLMNKFSGVGKTTERWSDNYHLSGDINNGNSGLLPLKEWKKFDPAFFGINPTMVSTIDPQQRILLKCTWEALEDAGIDPIKLRGSNTSIFIGCSTGDYLDMVKSNNEIQTNLFGSVNHSLSNRISYCFDFHGASMTIDSACSSSLNTVLLGCQSINQGKSNLCIAGGVNFILDTTIPTAFSFLNILSKNGKCMTYDEGADGFVRGEGAGLVVLKSLKDAIKDGNNIYCIIKGGNTNVDGNGNADKANFFQPSKQSQSDNIKLALESIKKKSMLDIDIDYVETHGTGTPTGDPIEVEGISKVFKENHSPENPLLIGSLKSNIGHMEAASGVTSLIKCCLMFKNKSFAPNVNFQKINPKIKLDEWNIKVVTEAIPFKKNKITSMVVNSFGVTGSNCCLVLTESINNNNNSNVDKITKNEKEYLIPFSANSNQSLKNYIEEVSKIDESLQFEDFVYKQLSNKSTSLFQRFVVTSKDWKELKYKLSQPLPLKEISSSISVKKPNPITVFVFCGQGSQFNKMGLELYNNDKNFRNYIDRFDKKLLEYYGYSVISKLRSIDDNDLITIHDPIIAQPATAILQISLFELYKHWGINPSFIVGHSLGELPMAFCSGMIDFDTVCYLLYHRSLAQSKTNGCGKMLSCNISSEEFVKNYSPRYPFLEIACYNSPNSIVVAGKESILLELSKEFKNSGIFCAMLGSLSSFHTSSQLEVKDHIYSLKFESKEPVIPTFSTVTTHLFNSNKLYDNDYIFQNIMKPVLFNETISNLYKHVENNQLGSEMIFIELAPHQTLSFYLKQLIPKDSNYFSNSNSITILSPLHKKKNDYLEIQQTISTCYCKGYDVNFKSQILIESKTNISNKSLPLYQWDDKEFWKDLEKQKRILQGPPMDTLGFSNEKSPILKSFETKIDIKKKPFQYLKGHIVKGKIYFPGVGYIENLLKMYPSQDIDIDSMEFEAPLILIEGIVTCLQSNVYKIGKNEFKVQFHFQDQKTKQWIQSSFANYHLSHRDDFDPTTNKLNIQNLISNNCNLTKLSKNQFYNFIKAKAGLSYNGEFQGVEKCYLGDNCSLVEIPFDTSNQDVETNINMIPILDSCLHGVHILYVEQCQMVLEKIEGLKYYSSTLILSKQKEQQKLYVFTRIENKDLINNSISASIIVMISDGTVFFEIESVSLKSLIPLKDPISIENPTDELFSSYLQSIDSLISEPSSYKSIYKRNEFISSGMSDLSRSDYQQFISTLLYTNLIKRNQSIESDLRNQIEFEEIKAKYCKNSKFERLFTFVIETIKQYDGINGNLNSWNEGNIDIYKILIKSTRIISKLLFPLQGEDTTIDTPQSLFENNLLDDFYNINGNTVIQNQLVGEIITQSIKPLINEKMVFRILEFGGGVGSLSIVTLNKINQLLEQHPNFQIDIEYTWTDISPSFIPDAKKLLSNIKGVTIIYRSLDLEESLIEKQLLKPSYYDFVIMSNVLHVIKEIKFGIDEIYKVLSPNGQLLFIETPYRMLICDSIFGVFDQWWGFTDTGIRVDRCCMKQKTWFKLLSESNYQDIIMSDDIKDCCFVIQAKKPSISSLEYKLKIDSQENDKIIVFGENDTFMKYLENKSTKQIIKIKTCQQFSDLITSNSKEINNQSIIYFIKTLNQLLIENFKEITLEYIQINQLLLSSGLSCKHILLLNQSTSENYLGSSISGAARYFDEFPPLKLYSFDFDKYSLNNESINIIDDIIEPIIKSMNNSNIRKELLVRNNKIFFERYKQEKRIKENYKSTSFENDKSLFVHLNANLEYELKSKQVKLKQNEIEVNVKATGINYKDYLVYTAMTPSELINHKGESNPEFGHDFSGIITRIGDDDGDNDNEFKVGDQVYGIWFNTTASHIIVDKEFLCHKPSKLSHTIASSIPVVYITSLYSLYNIGNIQNDESILIHSASGGIGLSALNILKWKNHKSHIFVTVGSKEKEKYIHDTYGDFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIIDLSITHLNHNEYTCNNNFKYNYGYHNVEVLFVKGDIISKLLKNITSAIENGSLSTGIPIIEFNDSDCFNAIEFINKRQHIGKIVVNHNKENLIQELIKKTNLPIIKSNYQINSDHLGKNILVTGQSGIILEILKWIVKYSTNVENIIILSRSSLKWELELLVNKNKNKLNFIYKSVDVGNSLEIEKVIDEILMENPQINNVDSIFHYAFTQISCKEHEIDQVHLNVSHQAKTMGAINLHNQSIKRNWKLINFIMASSAAGLIGSTDQCSYVCSSNVLDTFSKYRKHVLGLPSICINYGLIESTGFVSRNQSVAVMLDGQGIRPMQTNQILGSLDLFIQNPSKSTNIILTSFNFNEFATGNLQQSNVHKFDFQFNCCLSQKSKLMANNQASENPVKDLLINNICELLSIDESKLNIDIRLIDYGSDSLTIVQIKNLIDKNLLIPNLISIQMLQNNSISDNIKILTDSYNKKKQNEQNELKNIKVGSFTKK", "length": 2531 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K45-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKILYLIIYLTLTIVKGAPLYNCKKLNCSSMNTNCKVFGCSPMFGCFETSKCPQSNVDICHTNHCDENTGSCYQIADTCNDGNNNTIDSCGPYGCVNTPVNPPEPTQSCEQKCNDNNPCTVDFCDFRGDCYHYETRCSDYDACTLDTCGEKGCEYRPMNCDDNNPCTADFCSMLYGCYHEPIECSVKVPCRTDSQCNRNNFCETYSCDLSSNICDYYTRDCGGNPCINNECRTGTITN", "length": 239 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K50-1", "protein_name": "Phospholipase D Y", "gene_name": "pldY", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIINRLFIIIVLFFVNVNSKIISESTLNSCQGGTIQIAESIPLGLDISTNLSTHDAWMDLITNAQESIDLGFFYFTLLGGSDLDPVYGGQLGIDIFNAIVEAHSRGINVRIVQNEPSESFPDTETQTLAKLGIQVRSIDWVSLVGSGVLHTKLIIIDESSAYVGSANADWSSLAQVKELGIVLKNCPTMVADTEIAFQQYWNAADFTSLPINDWGSNYQALFNNTNMASLSLNNNNNNNNKNKNNDNDGSGTNQMYEMFLAVSPPQFQSTYRTGDIDALMDAINNADQSICITVMDYTPTTLYNDPNTYWPLIDNALRAAAFNRNVQVRMLISHWNYTSPIIPQWLHSLNQVDNIQVRWFVVPDFSTNPQIPYTRVNHAKFMVTEKQSYVGTSNWSQDYFTVTGGLSYNVFNNDFTNQLQSIFNRDWNSPYTQPIQNF", "length": 438 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K65-1", "protein_name": "Band 7 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIKKLSTTAIKFTKQTQRFNKRGFFKILNQYERGVVFNFGKFHTVKEAGFHIVIPFIQKCDIVDIRTFTYTLDKQKIISKDNINLTVDALVVFRIHDPKLAVTKANDCILLVNEMAQIKVCEILSHNTLDQVLHNRDKISNQIHDELKEALNKYGVTIEYLKLKDIHFDETIAKAIAKKVEAANLRDIKN", "length": 192 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KF5-1", "protein_name": "Protein LEG1 homolog", "gene_name": "leg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSNKTIFLILLFLINFNSIYSFNFKKEIKISNDKINLPTYNPWIFQDRFNLYSILINSTNIPVFGEDNSNNCLHGLQLQFEWQNRSGRLEINQGHVNTKSWWGDMNYYLSIIPYLSAMKMGLVPVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIGSIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNSNDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFMYLLKKMTKNEICRNLINNEINIFLNSPVPTIIEILFDILTNNC", "length": 326 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KK9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTEVPNQKHNDGGVGVTVGNFVKDNETNVNNNNNINGKGENDNNNNNNNNTIIDEPKLLNNNNNNILVIPLTTNIIDNELNQQKQHTLPLPLPPPPLPTQPQQITPPLPTQTQLPNNMLPSPRPIQQPKIRQQTQQQQAQMQQLQLQIQQEIQLQLQQQQQQQLQLQQKQNESEINGLFSPNFSSSSSSSLSTTPNMHSPLFNNNNNNNTTTTTTTTTTTTNSSTNNTNSSTQTKNASTNKISQDVIGVFDDTDTESEGEEYHSGRSIDFWNKDYKDIAWRCNWIDLQIRDLQYQSMVCDQLYHKVRRSKQKIIPDNKSLSSSIDNNNNNNLKSIPIETIDHSNNAITSSNIPYSNNEEEQQEQQQHPSQSIRTTSVVKLRKPRKLIRRPTVKLSAKQMTTDLEAHPLFTFHKGYFKFENAIKTNIINEMEIKYQEKEKPPKLLTLSEERLKQYINSNEDVDVVNLFATNESKRLSEKRRGRIPSDKKEKVSSHRLKSGDEIDGTSSSTATATTATTTTTTTTTTTTTNKKSRRSRREKKKEKEREKQEKEKHIKTKDEQKDREKKEKAREKELEKERKREKERIKEKERQEKERLKKEKELEKNKKKEKKLLKEKEKEIKEKKVKLKNQENIIEKDLTINNTTTKTTKSKKSSSKVKKSEQEGVKLENVEIEDEEVEEEEEEEEEVEDEEEEEEEEEEEEEEEEEEIEEVEDNEEEKRKEERRRRRRKRRILRRRKKLRRKQRKRQLFLQKQQQQQLLQQQQQQQQQKLLQQLKKRDESNGLSYKEIITPEWRDISSFANNDPSLPSPLLLSNPLLAQDIKNITTTTTTITTSEPISKFSTITEEELLIRQTTNGIDGTPMNGIGEDSESSGSEIELDEDAMKIIHARNEIEEKRRFFNTIKQIQMENPVPSYKRKKESLPVEFVAPTVEELLPSYHFNKKSIKLLGKSWNGDFEYYSSSDEDDYDDSDDYDSDDDNDDEDDDDSDSDDEDESDSDDYDSEYDSDLSDSDDSESESSDNELDGLYSSESEINHNSSGDEDEMDVELNNHHIPSKNSKNSKKQPVNNNVNNSNNLNGSSGGGKINSKPSKQQPRNSKANPPSKQQPTPLKQQPTPLKQQPTPLKQTTTPSKATPSPKQQSQQQQQQQQQQQQQPQQPQQPQQQQQQSPKPTPPLVSTTPPLSSVPLSPPTKTIRSTRGVSSLSNSTSSLPKQTNTPPISILSRKRNQSQSSVTDAPLSPTTTATTTTSPKPTTRRKGKLQETIPVEETKIIEETKPFEETVPIKENSTTTPLKRTRRQTKQQLVNGETTTPLTNGDNHVEKTDSNSTDVKVDPTSWWGDKQYKIQPVMEATVIRFKRVKNDDGDDDDQIQNNQKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNINNTEDLESKIKETKSINIPMEISTNGNDFQMKEKEGE", "length": 1472 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU3-1", "protein_name": "Probable polyketide synthase 25", "gene_name": "pks25", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNSYLNNPQFDINNGNKEVTDDDNNKNNQDNLVAIVGVGFRLPSGENERNNTPQALWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGITPNEAQTIDPHQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGSSTNDYLTLNRNEVKSNVFGSMAHSIANRVSYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDPYPYKAFSILNMLSKSNGRCKSFDASADGFVRGECIGVVILKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPNGDPVETEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNENKNTSMIINNFGVTGSNCCLVLSQFNNTNKQKQQMKTKINNYLIPFSANSVESLKKYQSLIINSKENELKYSFEEFVKNQVFIKPTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKRSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGLGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGAGYIDNLLKLYPNQDLTINSIEFKTPLILSDDNGQFLQTNVYQTGKSDYRAQFHFKDNRTNVWVQTCTANFQLYNNGKVDKLNLEEIKSTKCNLSSIPWDKFYPHIKNRTGLNYKDKFQNTIECYLGDNCSLTEISLELPENFHDQESFFNTPILDICFHGSIVLIKDNCKLVLDKIDGFKLYTSNIPKNRFDHLSIFVYTTMKSTKSNSYNSTYTVMLEDGTVILEVENLICTSLTPVKDPLLIEIPTDMYYTPYLQSKDSQIQSPLEFKSIYQNNQDNDSLLIPNVVLETIKPLINEQMEFRILEFGGNNLSNSTLLLNSINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIKYSLNQIYQILTPNGNLIINEQQPNNENNENNEDSLKNLLVNCNFNSDIMMKSSSVSDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCNQDEQFQQQQQLINKFESHYNNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSITFEYVQINQKLYEFKSKCTHVLITYDSQSSNYLSSSILGAARYFDEIPTLQLFTFDFDKDSLINLDISVIDHLIDPKQNTLIEFFIKKNGKVYFERFKKGLKKNSFKSESYHQITNEQEILISKLDENLDYQLKSKDSILKPYDIEVEIKATGLNYKDYLVYSGLIKLKGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGIGQSTSSSHIIIDSMHACHKPSKITHVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEILKSNNHSSPIFVTVGSEEKKQYLINTYGNLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDSNFKCLNPEGRIVDLTITHLNPNEFIDNNKFKYNFGYHNIELYYCEKPTIKKLLQSISKSIENNTLNYLIPITEFSNSNIKKAIEYINERKHVGKIVISHDTDITNKLIENQPKIDYSLLKSNYKIKNLGKNVLVTGQTGLILDIINWIMKYNSTVENIIILSKSSMKWEMEFLINNNKTKIKFYYKRCDIGGDSDSINKTFDKLFTENPTITNIDSIFHFAVVQITRKVKDIDMKSLNISHDAKTIGAINLHNQSIKRDWKLSNFILASSILSKVGSLDQCGYVSACCVLDSFSKYRLSIGLPALSINIGAMGGSGMVARSELVETVLNGQGYNLTSTNQLLGTIDLLIQNPGQESNNLMVGNFNFPVFNNFKQKIHQKFDFIFNALDSNSENGDGSNIKNSTNIKDKFLNKVSEFLSIDSSKINNDIKLMNYGADSLITVQLKNWVDKEWSPNLITIHQIQSNSIGMVCQIINDNFEKKK", "length": 2380 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU5-1", "protein_name": "Probable polyketide synthase 24", "gene_name": "pks24", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQNKINKAEILQVDDKHVEENLVAIVGVGFRLPSGSIENERNNTPQTLWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGINPNEAPTIDPIQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGCTESDYHNINKNEVKSNVFSSLNHAISNRISYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDSYFFKAYSSLNILSKSNGRCKSFDASADGYVRSECIGVVVLKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPTGDPIEVEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNKFKNTSMVVNNFGATGSNCCLVLSQFNYNTINNNINNHNNNHNHNHNHNNIKINNYLIPFSANSVESLKKYQSLIIENKEYESQYSFEEFVKNQIYNKSTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKCSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGSGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGTGYIDNIFKLYPNQDLTINSIEFKVPFVLTDGIGQCLQTNVYQTGKSEYRAQFHLKDEMNNQWINTSNSNFHLNSNDNYHEEKQKLDIQDIKQTKCNLSSIPWDEFYSLMKTQLGANFYGIFSKVVECYIGDNCSLTEISLELPENFHDEQSFFNCPLIDACFHGTVILYIQKNCKIVTDKVEGLRYYASNIPKNRDEHSSIFIYSTLKSSPSDDLLSSSIVVMLEDGTVIIEVDNLVVKSLTPVKDPLLIETPSDFIYTPYLQSKDSQIQSPLEFKSIYQNNQVDDGLLIPNVVIETIKPLINRKMEFRILEFGGNNLSKSTLLLNEINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIEYSLNQIYQILTPNGYLIINEQQQQQQQQQQQQQQQQQQQQQLLNNENNKESLKNLLVNCNFNSDIMIKSSSISDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCYQDEQLQQQQLINKFENHYNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSVTFEYVQINQKLYELKSKCTHVLITCDSQSSNYLSSSVLGAARYFDEIPTLQLFTLDFDKDSLTNDLDLFKTIDYLINPKNNIQREFYIKNSGTVYFEMYKKELKNLKNSYKSESYHDLSKQQDQLVSKLDEHFEYQLNSKQIDLEPYEIEVKVKATGINYKDYLKYNEMIKVNEAGIGFDFSGVVSRVGIKSSKEFKVGDQVYGIAYETSSSHIIIDSLLACHKPSKITHVQAASIPAVYSTSLYCLYDVGNLRDEESVLIHSGSGGVGLSGLEILKSNNHSSPIFVTVGSEEKKQYLINTYGDLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDTNFKCLNPKGRIVDLTTTHLNPNEFIDNSRYRYNIGYNSIEILKVGKSTIKKLLQSISKSIENETLNALIPITEFSNSNIKKSIESIKERKHVGKIVISHDTDIIDKLIEKESMIDYSILKSDYKIKNLGKNVLVTGQTGLILEVLKWITKYNSTVENIIILSKSSLKWELEFLMNYNNNNNNNNNNNKIKYHFKKCDISNWNLINKTIDQVLKDNPTITNIDSIFHFAALQINKKLKDIDMNSLNVSHSAKTFGAVNLHNLSIKRDWKIINFILASSVVSVLGSFDQCSYVSACCVVDSLSQYRKSIGLPSFTINIGGVSDRGYLSRHKLVEAVLGGQGVELISPNQLLGTLDLQIQNPNMPTNAFVNNFNWPLFKSFKQKLHQKFDFILNPINVDNSISMENDTNQSSSSTNVKNKFLNKVSELLSIDPSKINTNIKMINYGADSLITVQLKNWVDKEWSPHLITIQQIQSNSIGMVYQIINDSLDKKKKEMDEKLLPITAKTTTTTKNDPNDKTEYKYIAGGDCCREFSIKFHYSSVVNFII", "length": 2471 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LI2-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "mcm2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQNNNNNNNNNNNNNNNNNNKRKTKTPSSVNHNNTKINEDKDLYNFIDKIRDKTDKSHLEDEYDEDDNTKDGKFNKVEDEIKNDIDSEEDDDDIIEDNEHLYDGDEDSENLSSEGEGDDLLDEDLQDQDEEEVLGDEDNHYEMEGLDNETYEDIDKDKKTEVDSILTKRDREEQKTRQATNRHQYRISSFLLDENDENMVDEDTENNKLLEKRKANLIKKRRETIRQQNDNIKKDYDGSVPSFKDGFVNSERYFEDGDGDDDDDDDDFDIGDNGQVVNLEEPDKDKCLREYVCMSGPRNEISKQFAKFLLEFKEKDGFNPIYQESIQKMCAANKESLMINFTHLCASTVFGVWVAEIPTEMIEIFDEVALKVVLRIYPNYRNIVKSIHVRITHLPICESLRDIRQSNLNKLTKVGGVITRRSNVYPQLKHVKYDCVKCKTTLGPFSLDGTFNDSKPPIGLCPQCQSKGPFVMNSEQTVYRDFQKVTLQESPGTVPPGRLPRTKDIILMDDLIDTVRPGEEVEITGIYKHNFDLKLNYSQGFPVFSTIIEANHINKKEDLLSSFILTDEDEREIRKLSKDSNIAQKIIQSIAPSIYGHEDIKTGLALALFGGTPKDVNNKHRIRGDINVLLIGDPGVAKSQFLKYVEKTAHRAVYTTGQGASAVGLTAAVRMDPLTREWTLEGGALVLADRGVCMIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLTARCSVIAAANPKRGKYDSGLNLLQNVELTEPILSRFDIICVVKDTIDSFKDRELARFVVASHINSHPDNQNNPENDYLNRATKQSPISQELLRKYIIYAKRIKPRITDIDKNKISQLYTDLRRESRAGGFAMTVRHVESIVRMAEAHAKMHLRDYVTDFDVNTSIRVMLDSFINAQKNSMYKNLRTKFAPYVIFQKDINQLLTQLLQTLARDFSNYHFARSGDIPDQINIPYDDFDTKARELGISDITSFFRSNEFTSNNQFTLKKDKSTIIYYRNK", "length": 1008 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LX5-1", "protein_name": "U1-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKITESNNNNNNNKKDNNKHWCKYCKIFIQDNISVKNHEEGWRHKNNVTRFVSTQNRDKKYQERDQKEAEREINRIKNTGARSFREKDLSRVLDEKKHQQQPQQQPQQPQQQQRIFNNNSNNNNNNNNNNNNNNNNNNNNNNNSNNNNNYHQPQYPTTTTTTTTTNTTASNKNCDNADSKFKEIQEQQRQLLSNNDYYNYYQDRQQLIYDYYQNEGNQPIPEPPLNTSLYGYTESPLLKSRLDSSTDTLSSSSSSTIISPSHQKKRKQDDTNSPIPAKISKDECVNNENKDKSNEKENELNNNNNNNKSGEGEEGEESDDNDDDEEESGSGSESESESSEVDQSESIIGQWQTVDPIESAFGSTRKDSDDEKDKKDKKNKKDNDENKRDEKDYSDVSDADSEEESVNITKRAMANHKKPITLTNVISPTIPSTSKNFESVLSFNKSGVFSLNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEPPQPTPQITLKFNKPLKQRNTRKTNIEDKQS", "length": 514 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54M95-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLISILFFLFGILFFLKNVESASDVVCSFGYQACGNNCYSPSSGQKCYPGGVVCSFGYEACGNNCYSPSSGQKCNPGGVICSFGYQACGNSCYSPSSGQKCYPGGIICSFGYEACGRSCYSPSSGQKCYPGGVICSFGYQACGNTCYNPSAGQRCFN", "length": 158 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54N59-1", "protein_name": "G domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDLDYAIIVLRHHLESNGRFFEISKDDVKNRVTIKNKLTQEERYIDFGEIQNFIQYDEFEYNLLANGFQENLSILKNSILPLTKAPDSCSSNRGKTIGNSSLLINKVNGLIDDDKDTIYLLLIGITGVGKSTFVNMVVNYIEYSNLKDALENATLEQIYTIASKIEIQDENKTHKFSLGDVEDYKIGSSVTQYSRQYRIKLPDGKTLCLIDAPGVGDPQGTLQDNKHFENILHEISSLKKLNAICILMRPDETRATVLFKYCLNQLLLHLHSSAKDNIFFCFTHTRGTMYKPGPTRAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEFDFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIKLMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPKWYSSLYWCDNINKMGTCKKCSNTGVLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQFQEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSEYKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVEIDLFSKMKNKTKQIIK", "length": 689 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ND5-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "mipp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MMVKIKNIIILFCIFGLLSNVSSLSSSSSSSQSSDNNGNLSPIQDYDLEFLSKHLTTKTPYWILTKNGDSNSQGDGSSGNSNSNSNSNSNSNSNSDSSNEPPEQCKLISIDFIARHGSRMPVLNSIEKLKEMTTSILEYKEQVNQGFNWIFNYSVPYPSDIAGNLILQGQYEHYNISKRLLKKYPLFFEPMKYKPQSYSITSTAISRTGISASAFSYGLLQGTGSLGVDGFQPVFIETASLDQDILLRFFATCNQYVDQLKNGTLINKDEQTKWNQMVFPNISNEISERLGLSDIWLPTSNVISDIFEACAYEISINNISDHWCSLLSKQNILDWEYSQDLSNYWLKSYGHEINYQIATPLLNDILSGFDIYINNNNNGSSSSSSSSSSNNGDNSGSNGSSGSGSSTSTSSNDNGSTNNNDNKVEPTSILRFGHAETIIPFISLLGLYKDEQKLFANSSTEQIENRKFRTSVVSPYASNIAMFLFDCGSAADGFKILVQHNELPVLVPGCDEIYCDYQQFKSIFKQGIDNFKWNSYCNINDDDSGSSGGDSGNGNGNDSHSKKSSYFLAIFIPITFLVGGTIGGIFTYFSYEKIMQVKNRKKLTQYGNDEFISSPKSKSFSFKPTKFDSRSPLIQ", "length": 635 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54NT2-1", "protein_name": "SH3 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKITTQFARTRQMLFTKTGHSEETIDVQYHYEKERTFSTEERLVKIQKNSKKLIELYKDLNKITTDIAQDACDLYDTQDPMWTPGSKLRDVATNNDKHLLDYTEQMAEPYTKPLSDYISQYKEARKRTEELTTRKVDMDRYKNEVGKLREKGAGSSSKAKLAPTEEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSPLPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVDKDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSELSFRAGDIITIHKSEGEWWEGELNGIYGFAPGSYLRMN", "length": 374 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54PW0-1", "protein_name": "Annexin I", "gene_name": "nxnB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEYKEKEINTSSPSSPSKTQISNIENDSISEKAQEPISEKVQDPISEKAQESISEKEHIESNNVSEIIDLIKSGDQHLNNNNNNNNNNNNNNNNNNNEEENQEINYNDNQLSNEEIVEDVKNSNINNNNTIEKGNSSQNNNKNNNNNYHTEKCDYCLICKCYDYGEITHNIVEDSEILKQSIRYSYVDDTSINSILAHRNYAEKEAIMKKFNDKYNKSLETELASHTHQKYRRTLISILTEPSIYDTLNIENSIKTKNSNTLLEILLTRTNEQKELIKRIYLVKYGKNIEHDIIAKFSNGANVNGNMMKQLLISMLNNDRDSNSNQSLDMNLINTDSNRLYQAGEHKKGTDHEVFIEILSKRSFSHLSELDRVYENSNPKGHSLRKAIELEFGVSKSIKQVKISLLDILLFSKEPSKYWAEQFNRALTSGSWGINEIDLTRLTITQQHQASKIKQAYISHYDNSLINEVSSKTSFRYKKIILSMLTV", "length": 487 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QB4-1", "protein_name": "Kinetochore protein Ndc80", "gene_name": "ndc80", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MHNNNLTYQQYQQQQLLIQQQQQQLLYQQQLLQQQQQQQQQQQQQKQYSHGRPSTLGLPSRKPPPMQPQPQPQIQAPIQLTFQQQQQLLQQQQYQFNNNLNTINNNNNNNITNRHSMVTPSTNLGGRSSLGPPSAMLTNNNNNNSNIRNTTFISNSGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNNNNNIHTQVQPKKSIAPSKSNTISSNTTTTTTAASSSSSSNPSITLRQETRPVNDSKFQSQCLLRLQQFLSQSEKGYPRAITKDNLMSEINGLMKFLCLHIDPHFKLPTEKPEEEIISFFKMMGYRSAGFTKRVFSQVGNAHTRGHLLGAIIWMVELIEYDQIIRQMDSHIEREILNGNTIDENGNLTTTTSATNTNEDGNFNLTTQIFSKHVFKSYEAFLKGDDGNHVDQFLEEKFNEVNELIVKECEESMERQKKIKQEIVNLTQYITNDDIDQLNFKLEQTNQEIIATHDLINDNELEDQKLDQEIDQNQTHFQELEIQQKEHQKKKQEFESRIQIQQSNSVDAKRINQETFELKEELDKVQREQSRHDQLKQEKSKEIKQSINEIEKLIQSYKEICCKASLVTNDNLIIEKYRIIFTHTLNNNNNNNNTNNSSILNISNNIINNNNNNNNNNNNNYEEGIISISDLKLVIKNLQELNLEISQNISKIKQDLLKTSNLNDIQKESISDKELELARIKQKHDKQKNILKQEKQDQTFDITQREENIEQLKSSNKKLIDDGVRELEKTIQLLESQREEHSRLKIDLKQSSEQMKLQYLKRIERFISHRQLIGSQIFDTLRQMEELSLTQKILFPPPPPPPQLSQQHQQLMQQQHQNNTIDIDE", "length": 855 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QD2-1", "protein_name": "Probable cytochrome P450 517A1", "gene_name": "cyp517A1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIINVFLFLIILFLVKDFVKKNKKIHTKSPSGPIAFPILGNVVQIRFWELFKIQEHELFGGYSKKYNGVVRAWFGERLFFFVSNYDVVKYFQKDENFHNRPSVLVPGWRYASSNGLGVMSSSDDKWKRAKSSVSQSLRVRTTKKLMEEKAIEFIDSLEKISNNNEIFYPKGHIQGYACSMLFKYMFNQDLSVESGMSRTIGNAVEHVFGNLSKLTAFDCFEIFSPLYDWFFTRRLKGCDIVRQIISSQNENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVILQLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKNDQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACPGRFVAIDKMFLGISNLLLKYKLKTQNGEKIDDSIQFSVSLKAKDYGIKLEKRI", "length": 483 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RM4-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKVILIYFIVIYLINISFSLKPYQQQQQLHNFNIIENNNNNNRNEKVIIAHPKIPPYWLIENEISNPNDLISFKILLKQNNLNKLNYLFEEISDPKSKIYGEFLSINEINELVKSSESDFNVVLEYLKSFNIGNIENGSEIKVFSDYILVETTIEKVSSMFNSKFSNYKNKNNGNTRNRLNGPAYLPKQLLNSIDFVTGLSEFFENNFKIENYLNNNNKNNGDSDSDSGSGSGSGSSNSYNGGLDDILITPKVLKSYYNVPNELIGKFENNSIGVIAFNDYFSMGALELFDEKFNITTTKDNLKIIGNDCLGKGCDQYESDLDIQYIRSMGENISTDFISFNDAQWILDYLHSVLLMEKPPLVQSISYGWAELLQCDVSNGCSTFGYDSKQYVDRTNSEFQKLALLGISVLVSSGDDGAPSMGGSSGNCPIDGTVYCPTGGCNHTKTMCPEFTIYNLNGGSDSGGSSDSYCFFPMGIASSGCTNILGDPSVLDSGMKIFSEKNKQCNLAIEYDRTNLPHVYSECECKDLVNVTFRNYHFTQYQFNENNGALFVAEYPSSSPFVTSVGATQFLSRDEKITTEVGCTILQGAKITTGGGFSSFQSQPKYQQYAISQFFNTSFNSLPPSFSYCPTNRGVPDISMVGHNYKIYSSDGNNKDFNQCPCKSLPVDGTSCSSPTLAGLIGLINDQLLLNGKTQLGFLNPLLYQMAIDEPRIFNDITGDSSNRCSRSYCCLYGWSTSSNTWDPVTGLGSIDFNLFLSYVLKLKGI", "length": 767 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RX1-1", "protein_name": "Translationally-controlled tumor protein homolog 2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLYKDLIGNSHDDLLTDRYEIKVGDVTFEVKTKMITKDLNVVVNNNSLGGSISTTVDNNNSITLSTNLEDEFENVEAAGTFQINNLVEQLRLVETSFDKKSYLAYMKLYIKDLINHIKQQPSNSDNEKIEHIQKGIQSFVKTMMDGENFKKYSFFTGSSMDANGLVALMYYKDDDPTTPTFVFIKYGLLQVDV", "length": 194 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S19-1", "protein_name": "PHD zinc finger-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNCIVCSKVGQYPLNLVKCYECKSYYHKFCLQSTKIPRGEWYCSSCEIERKNKKNKKRKLDGAGKKNKKNNKDDDDDNDDDDDEGENDEDDEDHQDEDSGEEEDEEEDEEEEDDDDEEEEEGNEKNKIKKRKRIPINQSPSIKKRTKDIDSEEEEEEEEEEEENDSEEERRIQKRKNKIKQQQQLKMKEKKQREKLRKRRRRTRSSRKDDNDQDDDDDDDDNNSNNSDDNDQDENKNKQKRKRRKDKKKDDDDDDDQEEEEEEEEEIVTGKRKRRSLNKVQPNQHLNNENEEDNEEEEEEEEEEEEEEETDSSEEFLENLVCSSCNTGKDEDKILLCDTDNCSRGYHMYCLRYPITSVPKGDWICDFCRFGDISADLHSADDDEDGAINSQKEIEKQKQKQKEKEKEREREREREKEKEKERERERERREKEKKDALRSSFSNIPIPKINNINGSNGSNSNNNNNSNNNGSGVNRQSPPKVISKKSPQQSPKPLKSPTSSSSSTTSSPPPLHQQSKVTSKISPNSQQSIPTINSNINKSPPSQSKNSPPLKPLTPDLKKQIPITNITTSSTTTTATTTTTTTTTANTSNVATTTTLLKPSSQKKPTILSDKKQLNTSGTNLPMNGKKKEDLESSASHSILDMIPPNNKLFNNSIQSAPISWDLSGSQHKLSTSSSSLPNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIKLQQQLQQQQQQLHQQLQQQQLQQQQQQLHQQLQQQKLKQKQIEEEQEKEREQKRLENEQKLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEFIDQKELEDKLLSQFDNQNLKSPLSLTSTTSSTLSHLPQSTFESSTILSNKTIKQKWKSRILFETDQICQCEIIQIYGMDFKVNPFQNNITSKTLELSFNQVSFDNLPKPIRDEFITKSSTPSTCLDIGAIDLPNSALLIFLPEIPNQSSLYHLIIHFIENRVAGFIDLSNDLSLYIYPYQTSIISLDLIGILIDKKSLSPPSLILNQQQKQQKQQQQEQEQQNQSFDIKNICYIGINHISMNKILTSQGKNYFSFSNFNELTLSSDIKNFDLVVVDNKMVNNQTINKEINNLMQLQPTTNNNNNNNDINNNHDTLLLVIKDVEFSKWLVSQKKFPNSLEIQKIFQQQILFKQSRCIFLLDNSIIIENESSYFVEFISSFGKFKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNDWTIKISSTIFDELLPFGHQSNVKKKIDEIKRGINQQLIVSYDFSPMVPKQSSDFLLLALRIAHSKKYKQVFLITSNKIIQNQSKRYSNLNLNCLSLEGGIDYIKNINNKFSLKI", "length": 1361 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S56-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDLFSHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVGECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54SW0-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "NQAKSSTIQQPTQTQQSNINNNTAKPRAAPPLKLVITNSNPSLKQKPQSQQTIPQQSVPQQSIPQQTIQQSVPQQQPNQSQQVNVNRTINPQQQQQQQQQQQQQQQQQNINRTAPLPQQSNYKPQPGVIYQQQQQTQYRVGTPLTINRSPMVGMVSKQPMSSSQQQSQSQQNIQRVPCQGKCCAGLAVKPLVPINSITAKPPPYSTMGPRGPISGGFVRTSPTGAIIGPSPQQQTMSRAMVNSMPIQPQIQIKPKPSPLNNGGIPITTTTTTTTNPLNKSSPSTLTQSSNTLASSNNNITTSNSLSSSTSSLPTTSTTPTTKPKSKPRSKSNSNSQTSSSTTSSSSTPSTPTTNSTKNKENTTPNKGDDSGTDNEKSSLSNSSKLLPTAYTMDQVLPFNPNQMFLGPEDKYIKSATRTYHKIPTNPSVMSNNRGAEIPSSLEYILDIPIIHDEPSSKNNPTWGRLILDALRRLVANKKTTRITERLKLDNMYKDMDSRSNQDKLDWKNGLVNEAQLNYLLSFLSNTIPFPDTPEKNKNKYLSSSDSQIINSNDQSNSLNSNNSSNNSTTNNNNSSTTTNSTNNIINNNNNNNTSSVPNSTNNSNNSSPEQQDVIDMELKLEPDNSMNFPIEINMDSLGSYIDDSFTFDNSSYDDTATISSDDKNLPITTVMPPTTSTTSTPQTITNTIPTTTPTIISPPTITTTTTTTKTTSPPTITTTTSPPTITTTTSPPTITTTTTTINSITPTTSTSSTINSNTTPMLDIVIDPVISLELLDENHQQQQNKEVKEENVHSKQQPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQEDFMIQVQTSDLETQTQIQQDKEEIQVKPIVDSKKSGNSPTQIQQQQQHQQQQHHHQHNTLTQGFEFGMMMDIMNSPSSTSSMKRKRDDVDQPINQINNSSMVVQQNNDFFSDFNTIEAPFSSSHHSSQLSFQTPFSPDIVIDSDFQNKKRIVS", "length": 981 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54T36-1", "protein_name": "Probable polyketide synthase 19", "gene_name": "pks19", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFGNKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSITMGFQSIQNGTSNLSIVGGASLLLDPYVSKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSTTSTPSKPLLIGSLKSNIGHCEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNINEKPVSMVINNFGVTGSNCCLILSQFIEHSISLNGNNPSYPIESQQQIFLIPFSANSVKSLKNYEDLIINDNNLSTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTSNDKSSNITIKRNQPLIVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLDLKENNIFCAFLGSLSSFHTSSQNSTKNEILPLEIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDINFKCQFNHNDDDVNSIRNNSTIILPNYQFDEQYYWKVDINFEQYRLNGPNVFNNLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNKDIVINNLEFLAPFVLKENVKHILQTNVYQLGNTDYRVTFNIKDNKANQWVQTCTGNFQLISLKDNNNNNNNNHSSKYNINQLLSECNFTTLSKQEVYKYSKLRSGITHLGTFQGIEEFHFGNDLTIARIQINYENFDINGKPVYQTFDKSFFNIALLDNCIQAITGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLEADSYKSSVLVLLEDGTKLLEIEHISFRSTLPLIDELLLNNPTNELFTNNLQCKDSLVNILSIDNNETSSSSGSSNTVTEIIKQTIKPIINEKIVFRILQSFSDSELSKQIIEALNQIFDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDETIIKPIFNILSSNGLLLLIIEDDIGIRFNINNLIGVGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKHSKYTNEFKKLISNNHTNRKQTTISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGASRYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNEIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISDENKNCEFKVGDNVFGVSHDATASHVITDVLYVSHKPNNISHIEAASLPIIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIEFMHINKRVVSRLLKSISNALNENKVKLIPITTFQIENVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLENPNIDNIDSIFHYAFTQVTKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCTYVSANLVLDSLSRYRKSIGLPSTCTNWGTIKSSGFVSRNDSVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKYSNLIVSKFNYDSIKKFASETSTFQRLDFILNSIKEKDNDNNGGENISISESIQMKFLNKISELLSIEQSKINTDIRLGEYGADSLTSVQLKNFIDKENKSNVITLQQLQNNTIGVNIQIILEQIKKLDSNETKGKSKKIIKKDSAPSLEYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKVKVIVGNLASPLLGLSKLDFGFVSNQINLIINSGADINLASNYEESKVVNIGGLIELIKLSTTGDYQKPIVGFSSISVFFESPNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSIKSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKKTKELLQSMNSYEGGMVNEKIIQNHINYIFKN", "length": 2778 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TD0-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "V4-7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYELVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLIDNGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAKVDLVLGLSDFIEDNKMSESMRATKKQVQGSTVSITPAVIKQYYGIPTGQIGVESENFQSIAAFSDFYSSGALQFFDQKFGIDSSTVRVKNVGQNCIAQNCDQMESDLDVQYMTAIGNNITTLFLSSGNGEWIIDWATAIQQYNPIPKIASISYGWAEVEQCEITNSCSTLGIDSVVYVARSNVELQKVGLRGVSVFVSSGDDGAPSFGAASGNCPIDGTKQYCPLGGCNHKSSQCPMITIMESNGTQCFFPMGSESNTCQSMLQNQNIVNGINEFVSSNSKCQVALEQDTQQNYHIYSSCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKPEIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLVGHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN", "length": 702 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TX3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYFKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAIPKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHRWSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAILKNTNQDLHKYKFNKAWQTPAAPNPLPI", "length": 1097 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54U20-1", "protein_name": "Peptidase S54 rhomboid domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIYGDTREFRNIHFHLNNIRIVGAIFGQDGFIHKKIPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIVYNMITFLDLAKLERLTFGTLKYFYLLFLFGIITNLICLFIYFIGRNNVCHLGFSGVLFALIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHFSGIVVGILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPIIKFGGSRRSYNTDRKSLDGLFFELKNLFNPQQQQQRQQQRQQQQPQSPQPQQPQQPQQQPQQQPQQQPQQHQRDNFRNDNNDNSNNYDEYDFSK", "length": 343 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VC1-1", "protein_name": "ABC transporter C family member 15", "gene_name": "abcC15", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKKIKNIINKIINFFSTIYILCKIYLYYNIKNRYEAYNILSVYGDDDFFNKPCPEDSSNWKDKLTFKWVERIIFVGFFRAPLNLNDISDLPSSLKVENTAPLLKDIIFNDSTIPLIKHIYSKFLPRNYIATGLFVFVSVFSFITPLILKNFLSYVEKIDEQKHIYIGIIQCFLLFLSSFINMASQQYSYWFGFKTSLEVKGALETIIFEKMTKLSNLSKKNYNIGSMLNLMSVDTDFFQYFFCHYYIEIFLFPIQILSLLGFLIYVIGIAGFVGFLVMLITIPLSSFLGTQISKNLSTSMGYADTRISLTGELINGIKFLKQYAWEKMFCERIEEQRKLQLKYLYIRIIYWVLVQIVTQASSGLVLVSTFTTYTLLGYEVSLEIAFTSITILQNLRRPIESLPDCLHKFISLIASAKRIETFLQSSELQNQPFIHNQSGLNDILIRNINFNWNEHNLKLKNNKNNQNNNQNKRSIILSSGEQFEITNDFTFDGIDIQDDNYDYEKEYKINYNNNEEEENFMTDCLLKIKPLIKDRRLQQQQADYQDLLSINLPPPPSENVDFKAPKGLLTIISGGVRSGKTSLASGLLGEICKAVDKSSPDSVNSILSTIQQPFLQSTSFRENILFGKPMNMERYIKVIEACCLAPDLLAMGEGKDLTEIGERGINLSNGLKHRIQLARALYADSDCYILDEILSSVDPEIANYIFQHCIKGMMKGKTVILVTHQIQFISSADHVVVVDNGVLIQGTYLELLRMGIDFEMILKEKENRIEKQIVQLQEDEDYYEEVEILDFTMNNNNNNNNNNNNNNSNFNGNNKLKRSSISLPKGISIESIISKDFDQTTIEKAKLFVQEDRNKGDPGWIIYKKYIRMGSSISFFIFTCIIYLTSQIILLLSDYWLQSWASHDRLNVSEPTDVHYLLIYLAYIGGFVFTLGVRYLLIAKITFGSAETLHRSLLKSIIRAPLTFFEQNPVGRILNRFGKDISDIDILLLDCFSDVLYCGACLVTSIGIIIYISPYIAIPFVILIAINYIFQLFYNYSVLELKRIQSISRSPVYSLLSEVYNGLTTIRSFGQQERFFNMMKDNININLRVFFYNFAVSRWIGIRVEFLSAIVVLMSALFSIFNDNPGLSALGVTTALGITFNLNWFMRQFGELESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLVQGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAHNIDTILDSDKIAIIDEGELIEFDTPLNLIKDSTSRFSKLIKLNNNQKNKLN", "length": 1436 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VG9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSIIILSFILSIISFSNGTIVKCTSASCSSLNNNCVNHYCNPRAGCYGIDKCVRIDACHIVSCDLNNGSCINTKANCDDGDPCTDDFCHNGYGCFSLPNNKHPSVICQKNCNDNNPCTDDFCDFTNTCQHTLKNCEDNDFCTIDSCGPNGCVHTNISCDDNDPCTSDFCSIMYGCYHEQIECSIKVPCSTDIECNRYNLCETYTCDLISNICKYSTKFCNGFPCINNECMTGVIYN", "length": 237 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WA9-1", "protein_name": "Short-chain dehydrogenase/reductase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKKNIFFITGCSGIGFGGLMVKKLLSRGDYVAATSRNKNKLIQDIGSNENDQFLPIEMNLADESNVKEAIEKCIEKFGRIDILISNAAMGILAPLEETTDKDARTLFDINFFGPLNLIRNSLPYLRNNQFLKNNNDNNNSKLNGPRIIIIDSICGYSSLFNGCSIYCSSKFALHAISETMSIELKPFNIHCCNIAPGYFQTSFLSSCLIPDTRIAEYKDTHSFLDEIVKLNGSRFLGDLSKAVDVIIEISLSYSPPNHVLVGSDAFELFDLKYKKLTNDILINKEICSNTDKN", "length": 295 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WC3-1", "protein_name": "Cln5-like protein 2", "gene_name": "cln5lb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKLIFIIICLGIVDKTISSDFKSYNDGIYSFTYDNICSFKNSIRDQDVYELYYVQAPLLYATYGNLLEKINAYHSGIVLYNKNNGPNITIDYYAIPSFEATLFPKSIIKDSQGNYNITWDTHGLIEVTNYINETYWNKRQLIMYDLSGIQIKQYLSWAPIYNKTHTFYNLFNIESDLSISNSSKIYKNSSTCDDFVWASFDVLYKLGGTIASVQSDPQRDDIKLFISSGEPKIVDYNDSIKRNQIASFFNELKDFANLGKNKTALEIFNELITFFNGYFYCYIDGEYYEMKLSKQNPISFTYLPSPIPIGKRNFNEIKKLGFCK", "length": 325 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WW7-1", "protein_name": "Probable serine/threonine-protein kinase DDB_G0279405", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGCIFTKPSPEQQKFDGEDYECENKKNLNLISYIRNLLFGNNSHQQLYNEIIPTTTSTTSTTTNSVYQNIGLDGYNNNNNNNNNNNNNNNIMNNYGYDDYGYSYEEDEDYYDEMPIPTIVAQPQPQPQPQPQPQPQPQQPIRIVSQNQQIPTTPPQQISQFNITGNKSPSSIGSRHRSKPKETLRAHKKRHKDGHKMVNEYVFVRKLGKGTFGKVKLAYHHDTHHLYAIKIFNKIRLKKQTMGIGRPNAFDDVLKEIAIMKKMNHINVVKLYEVINDPQEEYIYIVMEYIEGGSIMSANETSEDLARKYFRDIVFGLEYLHEQKVIHKDLKPENLLVNSEGVVKITDFGVSHIFDDDDVVRCSRGSPAFLAPELCRNESQPISGKGVDVWALGVSLYCLIFARTPFISKTNSLLDIYDQIVNHEPTYPREISNDLMDLFKRLLDKNPLTRIQIAEIKSHKWTTISGTWPMNELDHLILSVTDQEMIDAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQNQNQNQNQNQNQNQNQNHNQNQNQNQNQNNNNNSLIEKSNISIPASSSSISNNDSCYENRNVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDENESQISRESANDYYLPFKTNKYLNNKSIV", "length": 695 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WX7-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MARTDNVQLPLENTSIEFEEEIIDSQNDISQQKNYQDFLKNIPTDLNERKEYISSLKKLIKLEKRNHQQIQGEQPNQQEGLNSDRPPPNHHGDHHHSLPPPNHHGDHHHHSQPPPNHHGDHHHHSPPPPHHHGGHHHCPPPHHGGHHHCPPPPPHHHGGHHHHCPPPPHHHGGHHHHCPPPPPPHHHSHHHHCPPPPPPHHHGGHHHHTPPHPPPHHHGGHHHHCPPSPHHHGGHHHHSPPPPPPHHHGGHHHHCPPPPHDGNEYLPQSQTNIEQCICRLNRKKELLIAKIQSIDSIIYNLECLNKQNYQNNYLPSIQLQPTQQPQQPQQTSIKPQQMCQQFFIPQTPNFPQMNNSAPLMYVSQIPVQQSFNNN", "length": 374 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54Y59-1", "protein_name": "Small GTPase", "gene_name": "rsmH", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNIFLSKSKDVYRVTSHKKEVKICVLGDANVGKTNFINQFTKSSFNEEYTPTIESRQNKLYKFNRKQFQIQIYDTAGSKELNLFVSDSISQCEGFIIVFSLNDRNSILKIQHYKTLIKNIFKDVEMPIVLVGTKMDLKKEITISKNECKITSVNNNIPNLFYTSAKNKESIIPVFKKLVDLIISKEKKVKKETESNNIKINNQNKIKKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHVFKTRSNSTLRMKKYLKLF", "length": 272 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YJ4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKVYQDEEFSFFEIGGKKIADLYVRDIITEIRKRGKEITGLGLKSKYELLCILVNRMKEENPSLNIPPKKRVLDFGSLSSTTSNGILQDSNKFFKKDNTHQHQQQQQQQQQQQQQQQQQQQQQQQQHSNNSDDDDDTHNYNDDSDESDDEYIITEEEEIELHKNLNLGDDENLLTLEIKLLESQLENKKFRKSLLLKDKKIKHLENIIQQQQQQLLEQQHQQQQQQQQQQQQQQQQQQRQEEEQQKEQQQKEEQEQEQSSLKNNLKFKDGANLFSIESISNLYNKILNEFNFKKIITEFGDSSLKIHEEFVKFIILKSINLNHNNNKNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNNLPNGDVNKNNNNNGEIIELVPPPKIDEFWKLMVLDTVGYQQFSNILGAKVNYDTDINPTRKGYQRLKDMKNLYFPPPPSTTELTTDEIWPNHYLLPIQPSPQKQHIQKQQLPSSSSSSSSSSSSSSSSQQHQQHQPQHKQQHQLQQIQEQQPQQQQHQQQQHQQPLQQQIQQQQQQQQQHQPQQQHQPQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQKKQQQQHQQQKNKENNKENNKENNKQNNKENNKLNDNNLNIEVHEDEGNRIINFLISPDTPLRNLFVAYAKEIGENFNSFKFYFGNELLCQNETPSQLLMRNGTKIQAFYLNKKEIKK", "length": 702 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YV1-1", "protein_name": "Rho GTPase-activating protein gacII", "gene_name": "gacII", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVRKLFNTSHKKELILDVDTTIVKIGTPKNVVLLTKWLDANGAIKEEGVFRVNGNTTTMEQIKKNFSQGKDDLTKYTSADIHSMAGCLKFILRELPEPIFTWDFYPIFIKIQCLQDESRKLFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQDQNKMTPKNLATVFAPNVLRPKKEEDNFQLMNNQDSIGVIETLIEEFQYISNIQKNTLNSQEIKVKSVLPFDETTNAITQQSLVEDYLIAKANTPQESSSFKKNLPFKKGDIIKLLYIKNDGNFIGEINGITGNLSQTYVDIIDISELAEAFTLTPPPIPTLPIASTILHTPPTSSSSSSSSSSSSILLTDNQPKLCSSTPRINNSPSSFSPSLSSTTPQLLVQQSPRQSPRQIPSISLIVEPNNTNQPSFGHGTLQRTSTGYFSSKPLSISQPINMSKPTNMSPPTHHAMSMHNLPPSNTTRENHLPPLPTKPPPLTIPSSSSLPTTPIKQQPQQPIQQPLTPQNHHHHHHHNNLSSSVNTANTGNCANILSPNSDRYLSSRSQSSVHLSGSSSSSSSSSSSSSSSSSSSSSTSNRKFDFSLKSKSSKNSPSKNLPPQPTTTSTLTPPPPPTITTTTTTTTTTTTTTIATTPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTITSTNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSRNTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTTHYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN", "length": 817 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA1-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSGSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA6-1", "protein_name": "Alpha/beta hydrolase fold-1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKINQTPKKHKIIEPNRKGYSIVGKNTGKPNKIYFETFGNGPKKILFITGFLSSSKGWCKQIDYFTNKKDQYEICVFDNRGIGKSNIDSKYSYNFSTKSMAMDAIDLLEDTLKWDKVHICGLSMGGMASIHLSSIIPEKVQSLVIACVPNGYFLPFFSMGVFNYIRAFFFTFNEKKKARIFQSLMYSDNYLDEKTNGSDETRSEQMFKKNSTGFKDDGPSFLTILGHQIGYITNRFSKKSLEVIKKYSIPTIVINSKKDSLVTIDITKKQIVNPLKPLNFHVIEGGHLSQLENPTFFNKLVENHVDKHSNWDHSTFFQVEKQQFQRQSFMTQNILYSKNYLSSNTLSSSFLNCNTLRSFFNKIKV", "length": 366 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZT3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551H6-1", "protein_name": "t-SNARE coiled-coil homology domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATRDITSSYILSRTECKNRAKIINSAININIKKSGSGYKRLEEENYQDIDIDNNNNNNNINNNNINNNDNDNDTTNNIKNSNNNNDIQLNILDTEINIEQLNSLPPWILKLNDIDENIKKIISLIEKFKKYLKEDIDKILAEDIEMESRIDCERSIELLTMETIRLFHKTFDMIKYLNKSNNSSQGENKMKKNTQRMKSAKLKALLITFKHIQRSYLALLKKVSSLQRSLSSSFLYRSGEYDVNNDNEDYGENSSISNSHYLQHHHNNNHHHEDDHDHEEDHEEIMDELNEMATTLIERQRVSQLIKETSHLIQDVGSMCVKKDSIFDRIDYNLAEGEELEFNGTILICDGITNGYERPENEKRKKLLLIFAVLIIVILFIFILKYVIEI", "length": 391 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551V5-1", "protein_name": "EGF-like domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKYLFRFFIFLFCITRINSQTGCFFRETGADYNIDSVFSVFYVDNLFNIFGMTFYMKTCTYVTCDPWRQTMICGNYNSTTFQLGPYQSQKVTLNKNGISIEYLSDKTPPNHPCPTITTTVKFICDKSVLSVPKSDYDYVGTCGVQIKLFAIDYCQTCSKCIASHGSCNSTSGWCTCDSYTMGLNCDQLKASISSVVAPTIDGGSVIISGDFSSIYSLGPSLVITIGSLVCSQVSFAASTTQISCTIGAGQGYQNLTISDGSGSTLQYKQFYYHYPCQEDCTPYGTCNDVIGKCTCNYKYSIGADCKTLNLQLTSVKPTLLDGGQAYLVGDFSNVTGLTLSVKIGIKECTDVNFNETTLQCTIGSGEGIKDIIITSDLLTYSKIGAYEYQYYTCPLGCLHGTCNKYNGLCVCNNGTYGDQCQYIECPLDCSTPNGVCDKDTGICDCDDKYSGEGCDFIKCPLDCSTPNGVCDGKTGICNCDEKHSGDSCQFLQCPLNCSNPNGICNRNTGICSCDSKYSGEGCDFIKCPTDCSTPNGTCDGKTGTCKCNNPYTGENCDEIAKCKQECSLKHGTCDSHTLDCICDTQTKGLSCEESRLLIESADPTSLDGGTTTITGYFGTTTSLLSIKIGDSQCTNIKVESDTKLKCDIGPGEGTHNVTVTDDDLSFTGVGMFQYVGQINKISKISGGAIAGIAAGCVVGVSVLGAGGYYQYRKNKKIELFMS", "length": 722 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q554Y8-1", "protein_name": "ADP-ribosylation factor-related", "gene_name": "arrB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGMGFSFIEKKDFKRFLILGIDNSGKKKIMYRLKFNKDIPTRPEKGFFVETFERRFKYNNEDVCGQNMIRPLWPNYYTDETNGLIFVVDSSDQERIEEVRLEIKKLDENIKIFKNHPFLIFANKQDLKNSLSIEQLIDKLELNKLSLNRKWHIQSSNAITGDGLEFGLNWLFSSSHNFT", "length": 179 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555E8-1", "protein_name": "Putative fatty acid elongase DDB_G0274669", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METVQSIITEWTDPKSWEKLVQHSFKDSNWKELIDPVNYKFNFGVTPFSQFQIIPIVLVIYLVTIFSIKFLMKNRKPFSLKFISILHNAILCIWSLIMCVGVLYEIIKRVSNEGPLFTVCEDPNGGFDKGVTYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCKTVWWKKYITMIQILQFVCLGIAGVLHVYTINTIGCFTHYPAFAAAYSINFSFLFLFSKFFVKSYTPKNSNSNTNIKSKKID", "length": 251 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555Q5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRSIRIKKINFHIKQGEEQLKQELNNYCEETSLKYISARIKKRHNDFTINAVKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDAPSHYEMLENWTVTRDSTWDNLENEFTTQEILEVIKQLNPHKSPGPDGIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPILTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLTKSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSDHREKFQSFADDSASMVPDSQQLELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKIPEILNTIRSSLVLWKTTDSTIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNTKMLVDFKITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKAIDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPKILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI", "length": 655 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556H5-1", "protein_name": "Cofilin-3", "gene_name": "cofD-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTPKPTIAKISPECQTHFQDIKFRNKYQGILLKVNEESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRYKSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDRITPKTA", "length": 138 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556J5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWNHNLCHAINLDRQFDHINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNSYDYSFSVHSSQQYSRHYPNSCNNEQTKPKDYYDHASRSQHDYHANGSNNGNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNNNNCDSNYNSNNNNSNNISIANIKYQQDQHYQHSDTYTSHQYNSFNDNNNNNNNNNNNNNNNNNINNDNDNNGYNQYDESEEDEEEQDDYDEFDIQDSASSYNDNCGVLNSNTYIYDYQSPQQPLYSNEYQNNNHQPQQTDSYNYNNTNNDNNSYNINNNNNNNSYNNNNNYNNSNNNNNIGNIDSNTNNNNYNYNYSNNGDVYNGYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNMNNMNNMNNNIITSNREQFYSNNNHNNINQYQYQSQQQQTQQQQQQTQQQQQQTQQQQQTQQQQTQQQQQYLTQYYQQELYSQSYKCRPYYQNSFVISKC", "length": 480 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556P1-1", "protein_name": "CWH43-like N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFFISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICGVCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLTTSVFIGYIILQFFIDNLAPILKIISALSIFFYLISFFYEFSKITINFQINTISQIEHQKEYNENSALLISQ", "length": 251 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556R5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLINAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKPTLQPSTICADTGVYSESNFTKTIQR", "length": 861 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556X2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557C9-1", "protein_name": "Homeobox protein 5", "gene_name": "hbx5-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METIVNNQNNGQQNTVPTQSFSSSVYMNYDFFDSQQLQQPQHQPQHYQQQDSFVSPNLDNNNPQIHVQSNNYNQNGFVGYNNSNNNNNNNQHMNNQYSNSFHNNNSSGFMAFQNNSSNFNNQNNNNSNNNNNNNNINSYDYNNSNNNNYNNNNNTHSNNSNNNNNNNNSNYWNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNHHHHHHQQQSQPTSPYNNPIQHNPNDMKFNGQHNPFNGNQMVMDNNNNNNNNNNSNVFNSNSNSNVFNSNSGSFLQINNNNGSFSSYNNNNNNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNQFSQSYDSTLGNNRFSSMMGQPIQQQQSPPQQQQQQSFIQSSPQAIPASNCNGNGSTSSSTSPLSPTLIGSAPGTPTSMLATTLFGFNLSSSPTSSPSSPVKKGKSQSALALSSSGGSGGSSGRKKPQKHDSMSSITNTNLKSTQASTLKESKRSNSSPNLKKQMQLQQLQQQQKLNENGTLIPPLPFASISENITNNNNNNNNNNNNNNNNNNNNNITNNPLSGSMEFPNSNNINQSSDSINGEFNIGQPESPKMYNSSPSPPPNATSTTKGGKKSKKSLHISTTQQSPSLNGSTGGSMLTPTMSGLSLSGGGSGGGFSPLISPTGTTSNKDLQSSPSPSPLLKSMSMGKLDLQDSIDSMSSPLSPNSSLSSSNGLLPPPPNSNNMNSSGGIPTPSTPTSPPPLTHHINIFSNLEFVKQLKDHLLPNDFKPEEHALERNLLRFQQFVKTLAEPLQRDVVTSMFELSVDAQLQYGSNLDNDNLSALMLFRRKILNFNLFRMMMLNDPNSFIPLPSPFPIQTTTISSNGTIVNPTNVNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTSANTVQSGTTSNSNLVFQQTSNSNTLSPSQQQQQQTQQQQSINGSSTGSLSDAQYQDLGIHLDTSSANSGCGINVSIGSSIGGGGGGSSLNGSNLNGSSSISGSISGGSSNGGGQFIMSPQFSLDGAYQQQQPSSYNINNEMELAEKDEDEIFNNNNKDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSSINSNINNVNNCNINNNSNSNNGSINSPRPSTPTTLNSSGKRSKKIYRGDSFGAGNDISTGLMASSDQIIPPPQQQQHQQLVNNNNNNMNNSENNILLADSNKGLSVSLGSLPTNTPSSMEIEQQQQQQQQQQQQQQQQHLNQQQILHQQLHHHLSSSLGGAQFTNIQQQQQQQSGNIFYNSPYNSSQVYMNPYGTSITNTSLAGPSTTSSAMQHMITNMTSSNIIVNNQNNNNNDQNNNNNNNNNNNSTTNSNVNNNNNTTNTPSSPPQPNNCTPTQTSIITSNGVVVPSLQMRGTITNPPPVLPTPDTLVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQETPHTPTSNSISSPRSSPVHQQSPSNTNTTTTSTTTIRHSAVTQLSFAGLHNQQVSPISPRSPRSPHGTSGDYNDGSQSPSSRRKNRFTDFQIKRMNDCFENLDKNNNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPTNPLTSSTNNGNNSNLALQHLQQQHLQQVQQQQQQLLQLQQQQQQQQQQLHQQSANTTPQLNSMNPNSINYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNITTINE", "length": 1723 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557D0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTGSNNLNSLNNNNNNKISLQETIQDIIKCSICLNSPKNPRFCPRCSALFCLECIDRWIISNPTCPACRDTLTSDNLNSNLIVSNILNELVKSEQEEYTSSDICNYHGYERLYYCSTCQEPICSDCALFKHKDHKIEKLSINFNKNLEILKIEEEALKKRQEELIELNSFLELDAETLLKNKSQIEKEISKVVITMKARLKYDFERRYNTILESQEKINNELTHLDFIYNDLLNHYKKSPSSFVLTSQQFIGVLQSVHKNSIMDIYTPINTDLTSELIPPFENRLLKFENFTTGDCLFSSRIAFYGMTWEIKCGIEEDNCFLNLKVLECNSDGKYFYMFTIVNQKTNVNKLIEFDLPFQAGETFYIPNFSSKQTLIDEGFILPENDILLLQFSFRPQNYFCYSNDLKRYIDILEYRHRGYFGEEDEDDGTIETTVTKLPNDKSTILGSDNYNDNYNDDGIGDLDEDEEEEEDDEDDDDNLDDHLQYDNDDDEDEEEDDEEQNEEDNDEEGTNIPTSEYEDLDTSSASVISNINRRDRFKNNNINNNNQFVNSNNNNNKYNTTNSNNSIVGSSRYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYILNRSYSTNKIYNFYQDEEEEEEDDDSNIDDQDEDEEEEDSEEESSLSSSDLQDLDSSGDQSSLEFSFSKYTNNYYSNNNNNYNSGGGGGVGGAGDNNKIECIRRDFNNLLKRINFTNSQLTNLKPGVPKDGDLLNDDENDKKCNIPLNEDEEEDEDEEDDVNKNKTTSTTTTTTTATTTNEVVTINPNTISNNSQDEEEVKSDIVKLLENGIANMLNNSNSSNRSSNNLKQQQQQQQQLQKDDQKQKDEQQNKSNTGCDIDQLNILSKLSIKESCDSIKNNDNDSLGNSTNNNNNNNLNNNNNNNNNNNNNNNNNNNNNNSNNNNLQSFLQSNENTENETDFNDNNTNPETNTETENEYLTSSNMNLDGGESEFDSNKSYEGSSTDENFNSDEDYQDEDNFNQDATGSESANNDDYLDDNEREGSDSIENYDEDIEKVLTSHNIITTPSIPPSQQPQPQLQTQPQTQPQSQPQSQPQLQPQSQPQPQTQPQLQPQLQPQLQPQLQPQLQPQLQPQLQPQTQPQQQKKYDDLSENQIQTENRNKKIKEEINNKTNNDNNNELGKSSKSNTSSSSSSSSSSSSSYSESESSESDSNNEYDNEDEDDIVNQVSNFNFNFNDASNFKNFSFRPKFPSDENDNDDNDDDYEINIDLKNIQKISPILRAIENGESNINHYQSPVSLSSSSSVSSFSGSGNSVPITATTTTTTTTTTTTTTTTDDDSGINMPISPLSASPPSPPPQNEPQINNETNDNDVKLPQI", "length": 1364 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559A9-1", "protein_name": "Probable polyketide synthase 13", "gene_name": "pks13", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENFKYRNNENDVAIIGIGFRLPGCKNFTPNELWNNLKNGFNGVVELSNRWSDNFYTMGKVSSAYAGLLPFDELKSFDPLFFGINPTEVPTIDPQQRILLKCTWEAFEDAGIDPIKIRGSNTSVFIGTSTNDYQRIIREKDQTITNAFGTSLHATSNRISYCFDFRGPSMTLDTACSSSLNCVKLGYQSIRDGTSNLSIAGGVNLIIDPYFTASISDLNILSKTGSCKTFDASADGFARAEGSGIIVMKNLKQAMIDGDKIYCVIKGASSNVDGGGLQDKSNFYAPSSLSQCNNIKMALKSTNGTVEPKDISYFECHGTGTPTGDPIETRGISMVFNDESRSKENPLLIGSIKSNIGHLEAGSGIASLIKCCLMFKNKCFAPNINFKVPNPKIKFEEWNLKVVTEPIQFTKSNTCIGLSNFGVTGSNCCLILSQFNNNNNDNQIVGNNNNIKSNKEYLIPFSSNSVKSLENYQQLLIKNGENEFKFLEFIKHQIFTKPTSLYQRSVVIASSWDQFNNAKIMKTSNSKSSNISIERNNPITVFVFCGQGSQYDRMGLELYNNDFIFKESMDLLDNKLSKYYGYSVLEKLRNCDSKSIQHPMIAQPVMCMFNISLFELYKHWGIEVSFIIGHSLGEIPAAYCSGMINIDTLCYLIYHRSIAQTKTHTNGRMLSINISADEYFSQYSKQYPDIEIACFNSPTSIVIAGNEQKLNEISEILKEKGIFSAMLASLSSFHTSSQNKVKEDIVNKQFDSKQSEIPIFSTVTTNLFDSVTSPFNSSYVFNNIVSPVKFSQTISNLYKHIESNQLGNDIVFIELAPHPTLQFYLKQMIPKPTNDDNSIEFKVSVYSALNKKNNDIEEIQRTISQLYCDNGYNVNFKCQFQHDDTHGSINSNINQLSNISLPHYQWDDEKYWKEDPSISKLIVNGPQTDNLGYLNENSPNSKSYETFIDIKRPPFQYLKGHMVKGKYYFPGCGYIDNLLKIYKSQDLTINQMGFKSPLIFIEGVNQALQTNIFKKSTSNTTTNNNDEFRVEYHFNDQKTNRWILSSFGDFQLSNHSSNSDNLEKINIKQLIQNQCNLTKLSRDELYSHIKSKTGLTYNGVFQGVNKCYLGENCSLSEVSLELKREPSSFFNTAVLDTCLHGMLCLLEEQSQLVFDRIEGFKYHSSNVPTSEEEMKIHSNIYVYSTINPSRIGDSYSASIVIMMEDGTVLIEIENAVCTSLTPIKESISVKYPTNQLFSMYLQSKDSPIPSPLNFKSLYNQNQQQLKIDKQFTDWMQKCEKFISNQFFKNIEKRNPEINLEILNSKTIIELKSKYCQNLKNERLFQFVFETIKQLGVNAYDDDDDLTIDSSEDRKSIYEILIKSTKVIPKLLFPLEDEDLTIDSPQSLFENGLLDRFYNNPNLMTNQCQLIAQIIKESLKPLLNKKMVFRILEMGGGTCSLSVVVLNLINQLLLENPSFEIDIEYTWSDISPSFISAAKEKLSHIDKRINILYRSIDIEQPFIEKQDLSPSYYDFVIMSNVLHVVKKLSPSLDEIHKILTPNGHLLFVEIPYKELISDSIFGAFNQWWAFEDTDIRKDRCSIPPNQWIQVLSNHNYKDTIVSDNKECTWCCFVIHSQKPSLLELSKKIECNQYDNIIVFGNENSQDNFTKSIKLSYNNNIIKWVSNIVEIKKFIKLNIITNNSIIYFTKGIEELTIDNFKLINFQYIQINQLLLKYESKCKNVLVTRDCDGSNYLASSLIGAARYFDEYRQLELFTLDFDNDTIQSCDECSSSSCSNLIKLIEPLIDPKINIQREFLIRNNRVYFERAKLETNLKKSFKSESFENSNKLISTLNFNLDYQLQSKPFKQLLQNEIEVEIKATGINYRDYLVFTGSLPIEKTNHNGISNQPEFGVDFSGIVTKVGGGGGNGEFKVGDRVYGIGHNTTSSHITIDSRYASLIPNSLDYIEASSITSSYILSLYGIFDIGNLDIQDNESILIHSGTGGIGLSALNSLRWKGHKSHLFVTVSSKEKEQYLRDNYGSFITGIYSNKDKNYPKLIKEKLNQLGSNKQGVDLILSSLPNGDDNLNFKCLAKNGRIIDLSNNIDLFNISKSKIKKLLNTINDGFESGELQVIPIIEFSNSNIRDAIEFINERQHIGKIVISHDDSNLLIDLINKHSNQPNYSILKSDYQISQSNLGKNILITGQSGIVLEILKWIIKFSNSIENVIILSKSLMKWELELLIGKTMKKANNKIKFHFKSVDVSDSIQVENSINQILNDNPNIVNIDSIFHFAFTQITKKVEEIDMESLNVSHNAKTIGAINLHNQSINRNWRLNNFVMASSATSIIGSTDQCSYVCANTVLDSLSKYRKSIGLPSICTNYGAIESAGFVSKNESVAAMFNGIGIISISTDLILGTLDLQIQNQQSSTNLMLSDFNFLNFVNNNLQLSLISKFDFQTNLAKNQVNEKLQNQTQNQNLQIQSPSSTTDCQTIIKDSFLHKISEVLSIDISKLNLDLKLLDYGADSLAIVQIKNWIDMEVSPNLIVIQQLQTFTITSSIQYTINSFLKKKVQSQE", "length": 2551 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559I8-1", "protein_name": "Uncharacterized protein DDB_G0272530", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIKLILVLIVFLTIVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCESNNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDVCTANNQCKFNNYCKSGKCVPLEKEGSSCDKDSSCSLTNACVGGKCVTKYQKPLGAVCNSSNECQVFSGHVCGANGKCSVYNQLLSKCKENSDCGPNGMCMCKSETENVCVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYPIFMCYQYSCFYMNQFIRSTQNYYKSFCS", "length": 301 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559Z2-1", "protein_name": "E2F/DP family winged-helix DNA-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNISLLLNNRNRNRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNGNANESASLNNGSEEIRSNPSSNFSSPIQSSLSSSSSSLSSNQATTPKKRSHAHKNSLKCQSPQMSPQMSPQMSPQMSPPLQYFPQHQMQHLSQYQLDHLQQQQQLIQQEQQEKQQQQQQHQHQQQQQEQQKQQQKQQQRLSPQPRSSQPRSSPPRSSPQRSPQLNQQEGHINSVQTYSGNNINDKNQNNTNNNNNNMSNNNNFHDDNNCNVNYNNIRNNSNNNNNNNTNNNNNNNNNNNNNNNNNNNNINNNNNNNNNSNNNNWNNNYCNNSFADETNKNNTYGMEYINISEENQYNNNNNNNNSNNNNNYNNYNNYNNNNNNNNNNNNSNNSNSNNNNNNNNNNNNNNNNNRNNIINSNINNSNNNNYNDNGYNNNSNINSNDSYNNNNNNNNNFNNNNFNNNNNNNNNNNNNNNNNNNNNKNNNNSNSYNNNNNNYNNNNNNFHNNNNNSAHNNNNNNYNNNNNNNYYNSNNNNNFHNNNNNNNNNGNNFNNNNNNNGNNGNMFTNVNSIDNVNRNNYNNYNGNNNYNGNNSNNNNNSNNEVSQITTTSLPVKKTKVFKAPREKKFKRGPDQDIREIKPATALLKQYFIGNSITEFNAERVGSILKINHEKLKDILDIMECASLVINNHSNNYVWLGLDNPGFLKLVFNVFHCSSNLVTKEPEFACLKCKENAYRCPTSVDLPKDTRLGSTVCQFMKLLLSKRIRTNPVNDFLTIYQVCFNFNFCSEGRCPEEDFKYLRNTAKVKRCYDVANVFNGLNILEKVGKSKIHSYQWCGDFTIQDCENGCPFGHPLLTPGTAYTTNPSPNPFNQFSNAYISSSAQSSLSNSPFIQGGFHGNNNNSNNNNINGNNINGNNNYGYNNNNNYNNYNSNNSNGFNNGNSFFQQQQPLVNSGVSMVRNNNYSYSP", "length": 964 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55A39-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSNETLPNSEQENNSKTDTKNDNKNIGDENKIIDTDKDMKDNDTINGKENGNININSNNNNNNNIDTDKEMKETSSIEEDDNNNNKNQNNNNNNNIKEENDNLTELKNNNNKENKENKEETIKEDKEKENNKEPVKNKEETNNINNNNNKNNNSDNINNNNNNNSKETLNKISSMSKVSLTSESSEINGQVNTGVVNNNTNIDITQTNLDEPRDSRVIKSILKTMGIQAHEPRVVNQLLEFMYKYVFEVLQDAMIYGEHSGKTDIDVSDVRLSIQSRVNYQISTPPPRELLLSIAEEKNKTPLPPIPNRYGVFLPPDEYCLTNPNYQANPTKPVFQPVQPLVGNTSRGNYNKKQSDKQVSIKFNSMSNNSTTTTTTTPPTIGSQNGTTIVSPPNLGSLGTTTTTTTTTITPPPPILPLSSNIKPPTLSIPSSITSPPTVTTKNTSTPIIGLGSTTVAPPKTSSSSSTIAPPVLSLPTSITSPPTVTASSTTTTTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMKDDITPSSTPQQPSQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTTPPPQIKEEK", "length": 619 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55B17-1", "protein_name": "Amine oxidase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKKILLIFALFILVNINFASSEFKKNETESANLKSLYASYLMKNNNNTKYNNNDNSNNTNIYNDSVTKNKSKNKNELTVGIIGGGIAGLYAGMLFIKSMIFDDLGIDYTILEANKERVGGRVYTHKFDDHKYSYTDLGAMRIPLTPLMDRIVSNQNYSLFSKLAKGGYQIPTVPFLISVNNEISYYNGIRVLKGSPVLNPSDPFNYSDSNNGGPGKGIPDEYANRTVDSLILPVFYQFINNLTVDFYNGFKQMLKYDSYSARDYLKTFHNYPNSVIEYIENLSTISGRLDQTSITELLMSVFDFSGEKFVCVEGGTGLIVKSMSQIIKKKVEMGSFVTKISKSFDKKNNEIDGLNVEVVRDSNFGGSDTEILKFKHVISTTTLPALQRIDTSDLKLPLKLKVAIRSLKYTGAIKLAINFKYRWWEDSEFMSGKPIRGGSSNTDLLLRQVVYPSYGINNGTKGVSGVLLASYSGGLESIRISSMIGKKDKERKLLNIVLRDLAEIHNVDLKKLKNLYKDHFFQSWDNDEFSSGAFALFSTSQYTELFPSTGQSHVDGRFHLSGELTSVHHAWMIGGLNSAYRSVDLILKNEGFEDLRIKLRNNWGTIEQAEYPSLDWYKYDSDINHYKLY", "length": 630 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55BT6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLLYIVVFLLFAIKLCCSEYCGETYCVENRNCYSFIGCRNSTCLYETIDLDDEVDCTVDTCSDRYGVKNTPNNSLCPPENLCDMFLCDTQSGCVAIPKVNCPAPNPCQIPLGCNRETGICEYDEIDCHDDNECTNDYCDPILGECVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYCDFKNGCVSQKNDWNCDSLSACSEGICTDNGCVQQEVDCDDDNPCSEDFCHPLFGCGSILNDTICTNGNKCVNSTCTEDGCSLPVPIVCQDGNPCSDDTCNPSTGCQFTLNNSNCNDGKKCTIDQCGLNGCTHTNITCPPKRVVDIILIGLICRNHYCDQSTGNCVPDMNSVSLLCI", "length": 370 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55C69-1", "protein_name": "Chromo domain-containing protein", "gene_name": "hcpC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKTNKKKIEEESEEEEAGDVFEVEKILDKRVQHGRIQYNIRWKGFSADYDTWEDEANVVGCPELVREFESSRIKEKKKNRKRKNVIIDEDPTEEISSSLSSILSSPQPQPPPPLQLTNHSPASSELAITTNTFLISNCTSTSNKTKISIENEEIIKNDHARYGVPYVEGIGFENGDCVDEIVGCKPFGENNLLYFFIRWRGKEKLSWVSNESIKQKEPLQLIEFYESRLKFGYKGEEN", "length": 239 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKNNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH7-1", "protein_name": "SsDNA-binding transcriptional regulator", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIFKITRTKRRWTKNQKKILVMKVVEKKVVVKKSKTPNTSPSSSSSSSSSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQLVVILENGDTIKDWIKESK", "length": 129 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CJ7-1", "protein_name": "diaminopimelate epimerase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEPSIDNKPSFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIESYMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI", "length": 355 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CV8-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MELLVGGTILGALTYAYSSLKRTIPEGAHACSPFYPEKYVGKWYEIARLDFYYERDMNNVSAEYTLNKDGTISVINSGYNYVEKKRESVNGKALFVHGSDEAMLKVSFFGPFYAGYNVIAIDPDYKYALVAGRSLDYLWILSRETSIPDHIKKQYLELAESIGYNTSKLIWTEHDNINNKKD", "length": 182 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D49-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D57-1", "protein_name": "J domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIQVKNKIKIISILITLFILTINQVVECKSSLYYSILNDYEKGIDYYKILNVTKDSTYSEIKKSFRKLSLKHHPDRNVEKSSHSLYILLNQAHSVLTTDETRKEYDELLVNGIPWHENYYGKYAYRYTGISHDLRHVLLGLIIVITIGKFVYQYNKHHSMIKRAKQTDQYKKRLAQLDGDEDEIQLVIQGADKPTISSLFIIQLFFIFPFKILKSIYTFIFINKFKFIQKTDEEKEEEYRLKMGYTKEDWEYHKKKSIERMEKLKQSGKYKKYLRSKNK", "length": 279 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E25-1", "protein_name": "DRBM domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKSHTSEKVQLNEFLQKKKQPIPIYHTESKGSEHNKDFKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKKIYDEKLQAVYNSVSSGIEGLNNNSFFTKIENNNNNSSSNNNNNLDHNHSNDSSHTSTDNNDNNSNNHNNNNNNQINIDLTMENVNISQSKTITNEGTLNNDNDNNNNSIQQQQHQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCFDKDKTNLKKKKKIPFSYNTDLIEHIDLFKRQDFPQTYPSRTTYTDTGHTQQLQKQVFLLTEKIGLMELFYKKQIRVILKSHHNLETELSALKSFVEDCSVTPIEGLELYSIPVPLNPNAKPSAGTTPVLSKSETQNEIIQPTKPPTKPPASCLIKKKIPNVNMKATNKTTTTTSTSTSNSSTTIKTTDSFKNTTNNQHPNTLKPMVSKINQQTSDFIFPLPKPIIRRNPIGNGNLEKKIEKKNSKPNTIVLGVDTQSQSKTKITPSPTTPPPETTPTTPTTTATPTTPTTPTTPTTTATPPPTTTATPPPTTTATPPPTATTPPPTTATTTPPPPPIIATTKTTATATATTIPIDLNEIQIPIRSPQDLTVNQSMISTAMMIASAAQRNPKLTMKLKRKLEESPTLMSKLQKIQFEKEEEILCSQDLHSPIMSPQSPTHQPKTLEPLSPTKKSTQKSPPPTSPSPIVTRARASSNLLPIQNLISKK", "length": 733 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E47-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E48-1", "protein_name": "thioredoxin-dependent peroxiredoxin", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKLKVGNIAPDFEAKNYLGQIVTLKEFKEKSQPIVLYFYPKDNSPECQKSCEFRDKYQKSIEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGILLPGRKTFIIDKHGFMAVFMMVYSVQLLMSMNL", "length": 142 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55ED8-1", "protein_name": "Decapping nuclease", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQTLNVIGLINFIKKQRSFNKSPITITKPLEITRFSYEGNQLFPAKLKKFKNPTIDSDLLVGFQGPDSIESDSQTPLSLVLNKLIETKHDVSKSNFISFRNSFRKLFESMYDSEKWNIQVQRINSTIHLGMDNPTQDFHQLKNFHLKSMYSGNYFEKISTIDNNNNPNDNKHKYCSIIQSKLFNNNFILACEIDCWKKSIQNNNNNQNNNNNENNNNDDDDENYNIDDYVELKTSRDIEDSKANYQFRSKKLIRIWFQAYIAGVSKIFLGIRNDDFFLKKCLNFNTHDLPNQAINWNKDEMLIYGNEILEFIKNNTCSGKSYTLSFNYPIISLVESDSINIINDQYLQYYLNIPKNFENNYNQNNNQNNNNNNNNENNSDDTKNNNIQNNNENNNIQNNNENNNQNNNEKNQKRNFGEEKEIKGDENEERLSKKQKKLE", "length": 440 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55EZ2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55F94-1", "protein_name": "Dynamin-like protein A", "gene_name": "dlpA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEEIRRTNAAAANAANKELNEQVEISSLEQMGKLDPSSTIHDMFSFFPNEVYNSYEKLQYFSRDLNTAVSHPEIVFVGPRSSGKSSLIEAFIGRALNIVGGGNIVGVGGSNANGCSKRVLYLQFTNNIDFEVPKVTIKKDNTIKEFDHDIIVSIEQLNENLAKRNQLTNDYIEEPIYVSIESRTTLNLTLIDSPGLLFDQSQAESNKIESIVSSLLRPSHRLIIAVESCSQDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTLPNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSYQDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTSEGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGGQQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDTFVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPSA", "length": 880 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55FX4-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDINSNHIKKINDFKDKGNKEFNKEKNKDKLNKRAITYFQLGIKYFNDEKHKIEINDQINKLISILYSNLSLMYLKGDEIILSLEASNKSIEFNNQNSKAFYYQSICKSYLCDYKGSMESIDKAISISKQDEKVVQQRNRLIEITNNKVKEDVYFENVLKNQKLENVAYENSIEKGRYLISKRLIKRGEEILRIAPFSFSLNGKYVSKFCGVCYQKKSIDNLLKCKDCDDFAICKECKAPNEPLSKYHPNDLCVLYKLNNEYYKMNNFEIANEDNKERGLTDERRLYINTIYNIFKNKTNNKAVVEVDNAISSSVIDVLNLSKKLLNHTNESQRAYSDSTKMKTDILELIFKSFYGANTLKKDEISNIIRIVDCNSHGYSDVISQKKKASGLYPFSCYTNHSCIPNSDYFIDKHGVMVLYASSDIQESEAITISYIYFLNRVEKRRKDLLNGHNFFCTCDQCSFQSSLTEEVCDKCNEIIPSTIGNSNLVYKEPKSLKETGFNYICPKGHTKSSLVYDIDNDQLYPTIAENYSKCKDLRNFRKINIFKEMLENRDFVKKLTPREFEVTPLAKYIANPKKSNSMLFEELINLVRGSVECGLTKSIEESNYSTYLVYDYYDLYKSLLLESKPQILKLNSIRDIIIKLLTPMVYNQNKPRIDKKLNKHLSNKINLKKNK", "length": 676 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55G93-1", "protein_name": "Tubulin-specific chaperone D", "gene_name": "tbcd", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENSEDISLNSSEKSIESSVVNLEDQQQSQQQTQQQTCQKTFVQEAPELTILIDKLIQLKHSNKDELISNTTRIIYIIDQYLEQPTLLDIHLNDIIQPLINFIKSNYINNSNNNNTTTTTTTIMTETEIVIKKLSIKNSFRIIYVLSKVRGFKTIVKLFQHEAIDLLPVLDQLEISYHQWVNINKQRDRLNEISVSYSSGINLKNYIKPEEESEQEVVDENNNNINNNHNIDDEYNENIISWEEVYVLALWVSLLVIIPFKFSSLDSASSGTASAAGDGGDGDGDGQLKSISSRILKLGKLALSDVSKIRDSFSELLSKLLNRPDMKFEQKQFIKWCTNSIQLISNNNNNNNQNNSSNNNILLIIGIYSTLATMFKKGNRLDFLPIDMNLYEKIMEANKYLSLSGSERITKKIFLKLLQRIAIIMLPPVSASWRYQKIIKPLLLKGELIKQINNNNNNNNNENNNEEGEEEEEEIPEEIDEILEEIMKSLKDKDTIIRWTSAKAIGRIVNLLPKDMGDQVIGLVIDQMFEKNEFIDADPSAWHGGCLALAELARRGLLLPERLDVVVPLVIRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREINCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPIVIKHLATIKIYNWDLEIRQLASKSIHLLTNINPNDIVSNYLPLIIPNTQSDLVHVKHGASLAISEILISLFENNNINLLSDNLKMMILMTIKNTKNEKLFKGKGGVLIRIGMCKIIYSICLVEFSLDKNLSEIKKPTESTSTNGNEDRAAALKLKIAMLKAKTASQINKPIITPPSSKSTTNNNNNNNNNNLNDNEIAFNIILGYLNENLNHPNEEVQKEASKAFELLFSKYISSNEKISLLLELIDSHCKTLKFDINRSARRGSSLLLGSLPFNSANLSYDLLSKVVNELILSIFQDDPKFKDIETRVNSISSLYKIGIYILNLIFKNQENEQKEEEDFKKSKNYNLFIKIWNCLGLATNDYSIDKRGDIGSWVRELSCKVLFDFIKFIITNQNSSTTTTTASTTDLSIENLINEKMITEFICKLFQLSGEKLDKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLICKVLKFNCYLYPLLFGLFSSLGGTSKYLINDSIQSIKQYFSSFDNDEKERFEKIISFSKAILEITNNTTQRMIQPTFRSIYNLLSTHIFDFLIINNLNEQSIFETILFNCYQIIESNQDDIYLLLNSIELFSYFFIQFENNNNEYIKDYSLKALLLLLSNLKYPKVRKLASDQLKKSTRLFINNNGDDETPSLIKSLIFNTKWDDSVDLIIEPLKSLLLLLNQKHLLELLSENPTKKPIPLAPPITSIEELKDKIQNPHKQSDDNNNNNNGELINNNTENNNNNNFDDNLPEDSQDLMEI", "length": 1480 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GP8-1", "protein_name": "Rho GTPase-activating protein gacO", "gene_name": "gacO", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKLPPPPVQSSPQGFQLPSLHSVQLKPVRPPPQPTQQQLASNTSPREVGTSLSPQSPSNNINPSSSSSSPSSSIRQSPSSSPNVARKVPPTPTNNNGGPPTTTTTTTTTMPPPPAFIKKLSPSSSPILPKRIVSSPPLNGNTAPPPPPIVHLPPPPPTNLPPPPTLSPSSSTTTSPSSSSLNLSGGVPLPPRILRNSDGSANNNNNSNNNSNNNINSLNLSTSGGIPPPPSFFNNNNNNNNNSGSFVNSASSNGSPSLQSQNSVGYFKPPPPPVPTRSASLDPKQMGQFIKPQQNQNNSNNINNINNNNNNIILPPPPNININNNNFVPYIPSNNNQQQSTTPPPIVSISPLKRNSIDNSVVNKRLSQDLNTMLVNRLQHGLSPPVATPFFDDKILGSASKSAELKEKRDQEERERRERERIKKEKEDSEKKEKKEKKGKEEQEKKDKKKKEEQEKKDKKKKEEEEKKSKSSSSSSSSSKKSSSDNTIVNQNIFNNTLSQIMENQRDAQSLSPSSLPYPLILKLLTESIMSLNGPYTEGIFRITGSGTEVNRLKKQINEHDFSLDTQDPHVLAGLLKLWLRELVHPIIPSELYNDAIKSRSKEEVSRIISLIPDQNKEVLNFLIPFLKNVSQPHYAQYSKMDIDNVAMVFSPGLLRSTVLTTDLLLNSQYEKDFVKCLIEMSP", "length": 684 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GR8-1", "protein_name": "Thiamin pyrophosphokinase thiamin-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKQEEEVQQQQQQQQQQQQPDKNNKETITWDVAEYGGYLFDKKLKAHNPLNHQMPLQYHHSQSTPHIPSSLSTSSTTSIKKPSSSLSDDESGGSSSSTPHSSNTPRKQFSFDDHCALILANQKLPKKLVDYFWDKCSVRICADGGANRLYSLGTKINQSSRWIPDYIKGDLDSLHEGVSDFFSKKGSSIVLDSSQDTSDLQKCFELIIDLEKGSGIKYRKIFILGGLGGSFSHEFANVNTLFDHPGRKIILASKDNLAWLLSSTYNHNIICRSETKCSLIPLSSKASQVTTSGLKWNLVKQSLNFGELISTSNVSLDNKVCVETSNPLIFIVDINP", "length": 337 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q561S0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRLLRLVPASASARGLAAGAQRVGRIHTSVHCKLRYGLLASILGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQYSSSTTGDGRPLDIEFSGSCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQKKGDPHEMKVTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYLNYNKGPWLKQDDRTFHNLRMLVQDKREVLNYTTVPVYLPEITIGAHQGSRIYDSFRELPGRKYAPGYNADVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q568T5-1", "protein_name": "Chondrolectin", "gene_name": "chodl", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRATLRILCALTFLVSCSRGARVVSGQTVCQGNPEHPCYKIAYFKDVSSRVAFWEALQACEMDGGSLLSIENTAEQKHIEHLLRELSVSSSTGPASITDGDFWIGLTREEGDNAQEPGAFASCPNLYRWTDGSVSLFRNWYADEPSCGGEACVVMYHQPTALAGPGGPYLYQWNDDRCNMKHNFICKYEPESHLVKVQSDRPGGHDVDLSTEDKEDRRTPPTDEDESPRLIIAGPSSMLLIYVIIPTIPLLLLILVASGTCCFQMLSKSKPRTKTSVNQSTLWISKTPKIDSGMEV", "length": 296 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5HYN5-1", "protein_name": "Cancer/testis antigen family 45 member A1", "gene_name": "CT45A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKAKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETASSPKSQREINADIKRKLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5I0J8-1", "protein_name": "PHD finger protein 11-like", "gene_name": "Phf11l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFEPSSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGATVGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYKLFCQRHAPGGQEPTQVDAAVKASFLKKCLEAGLLTELFEQIQQKMISIHGRFMDDTASESDYEGIKILLFDCGLFKDTLIKFEEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGVLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGDSL", "length": 293 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKDLAIGVIFILQCSMGILRHFILLSYYLMLHYNKHSLKPIDLILMNMFIANFLIIFPKSMLQTVEAFGIKLLFSVFVCKFLLYIERVGRSVSIATVCLLSVFQAITISPRNSCLYGLKVKVPKYISLSIFLCWALYFVVNMILPVYAYIKWSSNNMTYKRTLKYCFSVGHDEFTGSFFTILFVFPEVFLAILIVWSGSSMVVILYRHKQQVQHIYCNYASTRTSPESRATKSIVVLVSVFICFYSISSILYGCIALFCDNSWSLINIANIISLCFPVLGSFVVSHNPDFPRFSLSWIRNTRRV", "length": 306 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNDRMESKDLAVGVIFILQCSMGILRHFTLLSYYLMLHYNKHTLKPIDLILMNMFIANFLLIFSKSVLQTVEIFGMELFFNVFVCKFLLYIERVGRSVSVATVCLLSVFQAITISPRNSCLNGLKVKVPKYINLSIFFCWPLYFVINMILPVYGCIKWNSNNMTYKRSVKYCFSIGHDELTSSIFTILFVFPEVFLAILIVLSGSSMVVTLYRHKQQVQHIYCNYACTRTSPESRATKSIVVLVSVFICFYSVSSILYGCIALFCDDSWWLINIAHIISLCFPIFGSFLVSHNPALSRFSLSWIKNTRRV", "length": 311 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3F0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "LOC100911184", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFWNLAIRIIFLSQIIIGILGNVSLLFYYLVLYYREFTLKSTELILMHLMVANIIIIFSAGVPQTMTIWGMKQFLNDFGCKLLLYIHAVGRSVSICTTCLLSVFQAMTIRPQKFCGNDHKVTMERYLGCFISFLWVLYFLVNFIFLVYTYIKKNSNNETRKRDFGYCSTVGSDKISDSLYATLVMCPEVFFSVLIAWSSGSMIVILYRHKQKVKYIYSTHVSRRDYPESRATQNILAQMFTFLAFYTLSSTLRGSIALLSNHSWWLMNINHFTSLCFPSFGPFVLMSHYSIVSRFILFWLRKNCSNFLL", "length": 310 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JQC4-1", "protein_name": "Cancer/testis antigen 47A", "gene_name": "CT47A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARNLWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT", "length": 288 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5QNN9-1", "protein_name": "Trace amine associated receptor 12e", "gene_name": "taar12e", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSLNETQTENILLCYPLLSNSCPKLHRLAVVQVGLYVFLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGLLVMPYSMVRSVEGCWYLGDVVCKVHSSLDMTFCISSLLHLGLISVDRYWAICDPLRYRLRVTNITVTVFIVFIWLFSFVYSFYVVFSGVNTVGLETFIMQVYCVGSCVLYFNKQWGLICPILVFFLPGAIMSSLYMKIFHVARKHAKVMSERVTGGLKSQSSAQRERKAAKILAIVMGVFLFCWLPFFTVNALDPFFNFFTPADIFDAVIWFAYLNSTCNPLIYGFFYPCFQKAFKILIFTYICGVRNLDTFA", "length": 337 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP0-1", "protein_name": "Trace amine associated receptor 12g", "gene_name": "taar12g", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSNESENIQLCYPLLSNSCPKLHRLAVVQVGLYICLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGSLVMPNSMVRSVEGCWYLGDVVCKVHSSLDMTLCISSLLHLGLISVDRYLAICDPLRYRIRVTNTTVTVFTVFIWLFSVVYSFYVKFSGITAVGLEMLILQTYCVGRCVVFFNKQWGLICPVLAFFLPGAIMSSLYMKIFHVARKQAKVISERVTGGLKSQSSAQRERKAAKTLAIVMGVFLFCWMPFFTLTALDPFFNFLSSADVFDALFWFAYLNSACNPLIYGFFYPCFQKAFKILIFTYICGVKKANTLTFE", "length": 336 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5R1F6-1", "protein_name": "T cell receptor alpha variable 5N-4", "gene_name": "Trav5d-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTYAPTLFMFLWLQLDGMSQGEQVEQLPSILRVQEGSSASINCTYENSASNYFPWYKQEPGENPKLIIDIRSNMERKQTQGLIVLLDKKAKRFSLHITDTQPGDSAMYFCAAS", "length": 114 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5RKI7-1", "protein_name": "Solute carrier family 7 member 13", "gene_name": "Slc7a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMDIEKKIYLKRQLGYFWGTNFLIINIIGAGIFVSPKGVLQYSSMNVGVSLCVWVFCAVLSMTSTLCAAEIGITFPYTVAHYYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALLLAEYGIQPFYPSCSAPAVPKKCLALAMLWIVGILNSRGVKELSWLQTVSMVLKMGILSFISLSGLFLLVTGRKENVRRLQNAFDAEFPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEPSKTIPRCIFTALPLVTVVYLLANLSYLTVLSPQELLSSDAVALTWTDRVIPQLTWSVPFAISASLFSNLVTSVFETSRTSYIASRNGQLPLLCSTLNVHSSPFIAVLLDVSMGSIAIVLTNLIELINYLFFVFSIWTVLSVIGILKLRYQEPNLHRPYKVFSPFLFITAAISLSMVLIPLIKSPKMQYIYVFLFFLGGLLFYVPLIHFKLKLIWFQKLTCYLQLLFNICIPDVSDEHVAEEES", "length": 479 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5XHX8-1", "protein_name": "Sperm microtubule associated protein 2", "gene_name": "Spmap2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGELGEHRSRSSLLSIPVLDTKTSGGSEYRESDGSLDLQSTLFEDHWLQSSQATTERNTDDPEEEIPPEEMVGEELPEVSNLEDSLRRDLEVEVVGMSHLSINERTTPTTSSAKCRKKKNHRLLELAKPKFNWQCLKDRTGRCCKGHVWISPRKTNLQFCLYWPSVYWTERFIEDTTLTITVPEVSRRVEELSRPKRFYQEYYNNNRTTPIWPIPRSTLEYQASNRLKRLATPKIRNNIWSINMSEVSQVSRAAQMAVPTPRTLRLAKPRAPATLLEEWDPMPKPKPYVSDYNRLLQLATPKALSEKCVPDRSPQWEVLNVTKNAVASSRIISLAQPKIRKDLNEGYNPYYISPASLVAQASPRIYELAVPKHITKKV", "length": 378 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q63550-1", "protein_name": "BPI fold containing family A, member 2F", "gene_name": "Bpifa2f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQLGSLVVLCGLLIGTSGSLFDIFQNPELDVESVWSEINYRIRYALETMDLDMLADYLSKRGIELKIKDLRILNLNHEVSPNGDEVTLKMPMALNASLSLPARDLTTDVSISMEAITSFAIEKDPKTGRRVLNMQRCSLNTDNTSISLLNRKSNFVNLALDSALYLIKRGLTLPVRRQLCPVLQLIISNTFHPDEISNPQTAIST", "length": 206 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q64583-1", "protein_name": "Cytochrome P450 2B15", "gene_name": "Cyp2b15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVLLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFINTYLLRMEKEKSNHHTEFHHQNLVISVLSLFFTGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSEAFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPVAPEDIDLSPINSGISKIPSPYQIHFLSRCVG", "length": 495 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q66X01-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9C", "gene_name": "Nlrp9c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVDSSSYGLLQYFQKLSDEEFQRFKELLQKEQEKFKLKPLSWTKIKNTSKEDLVTQLYTHYPRQVWDMVLNLFLQVNRKDLSTMAQIERRDKQNKYKEFMKNLFQYIWTSETNTYMPDRSYNTIIDRQYKALLDIFDSESDPATAVVLGTRGKGKTVFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSKLPECSETLDDILSNPKRILFVLDGFDYLKFDLELRTNLCNDWRKRLPTQNVLSSLLQKIMLPECSLLLELGESSCSKIIPLLQNPREIIMSGLSEQSIYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNPSMLWMICSSLMWGHYSREEVISSSESTSAIHTIFIMSAFKSIFGLGSSKYKRFKLKTLCTLAVEGMWKQVYVFDSEDLRRNKISESDKTVWLKMKFLQIQGNNIMFYHSTLQWYFATLFYFLKQDKDTYHPVIGSLPQLLGEIYAHKQNQWTHAQTFFFGIATKHVITLLKPCFGNISFKTIRQEIIRYLKSLSQPECNEKLVHPKKLFFCLIENQEERFVSQVMNLFEEITVDISDSDDLGAAEYSLLRASKLKNLHLHIQKKVFSEIHDPEYGSLENFKLDQKFSAINWTMLSILFCNLHVLDLGSCHFNKKVIEVLCNSLSPTPNMPLTVFKLQRLLCSFMTNFGDGSLFCTFLQIPQLKYLNLYGTDLSNDVVEMLCSALKCSTCRVEELLLGKCDISSEACGIMATFLINSKVKHLSLVENPLKNKGVMFLCKMLKDPSCVLESLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDIGVNLLCEALKYPNCTLKELWLPGCYLTSECCEEISAVLTCNKNLKTLKLGNNNIQDTGVKRLCEALCHPKCKVQCLGLDMCELSNDCCEDLALALITCNTLKSLNLDWNALHHSGLVMLCEALNHKKCKLNMLGLDKSSFSEESQTFLQAVEKKNNNLNVLHFPWVEDELKKRGVRLVWNSKN", "length": 1004 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q675C0-1", "protein_name": "Taste receptor type 2 member 102", "gene_name": "Tas2r102", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPVIYSFATLLIHVEFIFGNLSNGFIVLSNFWDWVIKRKLSTIDKILLTLAISRITLIWEIYTWFTSVYGPSSFAIGMKLQILYFTWILSSHFSLWFATALSIFYLLRIANCSWKIFLYLKWRLKQVIVGMLLASLVFLPGILTQRTLEERPYRYGGNTSEDSMETDFARFTELILFNLTIFSVIPFSLASISFLLLIFSLWKHLRKMQLSSRGHGDPSTKAHTNALRIMVSFLLLYSIYFLSLLLSWIAQKHHSKLVDIIGIITGLMYPSAHSFILILGNSKLMQTSLWILSHLRCRLKGENILNPSGNQVTSCYIFCIANKSVS", "length": 327 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q68FP3-1", "protein_name": "C-C motif chemokine 6", "gene_name": "Ccl6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRHSKTAISFFILVAVLGSQAGLIQDTVKEDRPFNPTIIHQGFQDSSDCCFSYASQIPCSRFIYYFPTSGGCTKPGIIFVTRKRKRVCANPSDQRVQTCISTLKLGPRSGNSAIA", "length": 115 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6EKJ0-1", "protein_name": "General transcription factor II-I repeat domain-containing protein 2B", "gene_name": "GTF2IRD2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRKIDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYTERMRDEKLHELKKGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLRVEKSLKKFCINWSRLVSVASTGTPAMVDANNGLVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT", "length": 949 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NXT2-1", "protein_name": "Histone H3.3C", "gene_name": "H3-5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 135 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P3W6-1", "protein_name": "NBPF family member NBPF10", "gene_name": "NBPF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRSLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGSYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSQDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAFDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEENHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELCDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDKIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEREVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", "length": 3795 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6UGQ3-1", "protein_name": "Secretoglobin family 2B member 2", "gene_name": "Scgb2b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLALLVTGELGFQRTEACIPFFGVYLGILSGNRIGLHTELAPFDPTVEEKEAFEKIQDCYEEEGLKAKTEDMKLMTTILFSSECRSYYTKEVLKNILVKFSKKLTHGS", "length": 114 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6YCH2-1", "protein_name": "TD and POZ domain-containing protein 4", "gene_name": "Tdpoz4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGELEAKSRGDTQSHEQKLCYRWTISNFSFFVEETEEYITSLVFSLEDNDKMTWCLRVYPTGVDEKNKDYVSLYLILLSCEKGSVWAKFEVCILNAKGEKCNTERIPSFSRIQPHQPFGFEKFITRDSFLSPAQVLTPDDKFTLLCKVSVLQDSFSISGQNPRPAIKVTRCTLENDVGELWENPLFTDCSLLVAGHEFRAHKAILAARSPVFRAMFEHEMEERLTNCVEIHDLDPQVFKEMMGFIYTGKVPHLHSHSMACDLLAAADRYGLEDLMVMCEDALCRSLSVENAAHTLIVADLHSTEHLKTQALDFIIVYASEVSKTSGWMSMVESHPRLVAEAFHSLASAQRVFWALPFKQLKWSLRPTQL", "length": 370 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZMA2-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNCTQSPGFILLGLSSDPEKWQLFFSIFLALYLLGFLGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKMLEALWTGDGSISFSGCLTQMCLFGVFADMDNLLLAVMAIDRYAAICQPLLYPLLMTPCRCGVLACGSWGIAHCASLVYTLLLSQLSFHSNQEIPHFFCDSRPLLWLSCSDTHLNEFLMMVLSALLGISALLCIVSSYGCIFCAVARVPSAKGRRKALATCSSHLSVVLLFYSTVFATYLKPPSTSHSSGEVVAAVMYTLITPTLNPFIYSLRNKDVKNSLKKLLNMEKPLD", "length": 309 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q70YC5-1", "protein_name": "Protein ZNF365", "gene_name": "ZNF365", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLTKCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKAHFHPKGRNHLKKAKDDRASMQPAKAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII", "length": 407 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q71LE2-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q7KR10-1", "protein_name": "Probable cytochrome P450 12d1 distal, mitochondrial", "gene_name": "Cyp12d1-d", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNTLSSARSVAIYVGPVRSSRSASVLAHEQAKSSITEEHKTYDEIPRPNKFKFMRAFMPGGEFQNASITEYTSAMRKRYGDIYVMPGMFGRKDWVTTFNTKDIEMVFRNEGIWPRRDGLDSIVYFREHVRPDVYGEVQGLVASQNEAWGKLRSAINPIFMQPRGLRMYYEPLSNINNEFIERIKEIRDPKTLEVPEDFTDEISRLVFESLGLVAFDRQMGLIRKNRDNSDALTLFQTSRDIFRLTFKLDIQPSMWKIISTPTYRKMKRTLNDSLNVSQKMLKENQDALEKRRQAGEKINSNSMLERLMEIDPKVAVIMSLDILFAGVDATATLLSAVLLCLSKHPDKQAKLREELLSIMPTKDSLLNEENMKDMPYLRAVIKETLRYYPNGFGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVEFNRDASRPFKTMFLMEPAITFPFKFTDIEQ", "length": 521 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7M715-1", "protein_name": "Taste receptor type 2 member 117", "gene_name": "Tas2r117", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKHFWKILSVISQSTLSVILIVELVIGIIGNGFMVLVHCMDWVKKKKMSLVNQILTALSISRIFQLCLLFISLVINFSYTDLTTSSRMIQVMYNAWILANHFSIWIATCLTVLYFLKIANFSNSFFLYLKWRVEKVVSVTLLVSLLLLILNILLTNLETDMWTNEYQRNISCSFSSHYYAKCHRQVLRLHIIFLSVPVVLSLSTFLLLIFSLWTHHKRMQQHVQGGRDARTTAHFKALQTVIAFFLLYSIFILSVLIQIWKYELLKKNLFVVFCEVVYIAFPTFHSYILIVGDMKLRQACLPLCIIAAEIQTTLCRNFRSLKYFRLCCIF", "length": 330 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7M719-1", "protein_name": "Taste receptor type 2", "gene_name": "Tas2r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCAVLRSILTIIFILEFFIGNLGNGFIALVQCMDLRKRRTFPSADHFLTALAISRLALIWVLFLDSFLFIQSPLLMTRNTLRLIQTAWNISNHFSIWFATSLSIFYLFKIAIFSNYLFFYLKRRVKRVVLVILLLSMILLFFNIFLEIKHIDVWIYGTKRNITNGLSSNSFSEFSRLILIPSLMFTLVPFGVSLIAFLLLIFSLMKHVRKMQYYTKGCKDVRTMAHTTALQTVVAFLLLYTTFFLSLVVEVSTLEMDESLMLLFAKVTIMIFPSIHSCIFILKHNKLRQDLLSVLKWLQYWCKREKTLDS", "length": 310 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTZ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 1", "gene_name": "USP17L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHCKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TMR7-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "Slc16a6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQKNSKLCSRANVYTQVPDGGWGWVVAASFFFIEVFTYGVIKSFGVFFNDLMDSFDESNSKISWIISICVFIMTFTAPLSTILTNRFGHRLVVMGGGLLISVGMIAASFSQRVYQMYISIGIVSGLGYCFSFLPTVTILSQYFDKRRSMVTAVASTGECFAMFAFAPAITALKEHIGWRYSLLFVGLLQLNVMVCGALLRPIIIKGPGSPKAIPLEPRREVQYMLENEKTRTSIDSIDSGVELTTSPKNVPSEAKREQEVRVEQQQTLVVGPKHSQKRAPLLDFSILKDRSFICYTLFGLFATLGFFAPSLYIIPLGISLGIHPDRAAFLLSTMAIAEVFGRIGMGLVLNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMLCSVFFGSMVGTIGGTHIPLLAEDDVVGIEKMSSAAGVYVFIQSISGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKKGLCQNPHSGENQTDGHRGKALQDIPEDFLEMDLGKCEPRAHMKMDPV", "length": 522 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TN50-1", "protein_name": "Mas-related G protein-coupled receptor member B8", "gene_name": "Mrgprb8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQNSIP", "length": 328 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TPX8-1", "protein_name": "Oogenesin-2", "gene_name": "Oog2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNFYSPPTLMELARQCLLRDEYLAISALKDLPNMMFPVMFKEAFIDGHTKILTAMIPVWPFPYLSVGTMLKNLNLDTLKAVLEEIDILISKPVFSSRCKLREITLSHDLVVVWAGSHEVEGLPEFMEQEKPVENSPGYGTKNKLKVTTELQFMEGHLDECSTYLLQWAYQREDSIHLHCRKLKIYGLTKAAVIEMFKIVHAEYIEDLELSCLCLEYLDFLNPYLKQMSNLLSLTLDEIIYTLNIDDYRNLNEEKVITVISHLPTFHHLQELYVHGVIFIECLRCLKKPLEVLSFTDCDLSQSDLDYLPYCLNIFELRSLHLTDVRLSNLLLEPLGFLLERVRHTLKSLQLMSCEMGETHFNALLPALSQCYQLTVVNFYGNELSLLFLKKLLHHTAKLSQLADELYPAPQECYDNRDVVLSHRLENFCSELLDILRAIREPKKVTFGTIKCSKCGGSYVYDLETQCCFFEKNPPWA", "length": 476 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQY5-1", "protein_name": "Olfactory receptor", "gene_name": "Or4k38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSNRTVSSEFIFQGLCSSRQLEIFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFIDFCLSSVTTPKLTIDLLKENKTISFVGYMRQIVCVHFFAGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQKCIWLVVISWIVGFVHAISQMLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATTCFILLLISYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVSITWVDKFLAVFYSVITPLLNPAIYTLRNKDIKNAIKKLISHK", "length": 305 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TR72-1", "protein_name": "Olfactory receptor", "gene_name": "Or8k25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKYNLTIVTEFILVGITNHHEFQVPLFGLYLIIYLTSLVDNLGMIILTIVDSRLQTPMYFFLRHLATTDLGYSTAVGPKMLRNFLVDQNIISFYACAIQSSFFGMFIVCEFFILSAMSYDRYVAICKPLLYTVIMSQKACWILVTIPYLYSIIVSLLVNIKIFTLSFCGYNVISHFYCDALPLLTLACSNTHEIEAIILIFSAFNLLSSLLIVIGSYLLILMAILRINSAEGKWKAFSTCGSHLTVVIVFYGTLIFMYLQPTFTHSIDTGKVISIFYTQVIPMLNPLTYSLRNKDVKDVLKKPMEKVHNLFS", "length": 313 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSF0-1", "protein_name": "Desmoglein-1-gamma", "gene_name": "Dsg1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFTINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEENTLHSQLLQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAVKNLQLCIGVRNVAEFHQSIISQYRLTVTLITVTVLNVVKGCVFQPGSKTFIVDSRMEANHTVGEFLATDCETGQATNKFKNVRYRYVMGNNPENLLVVDSGIITLRNRVTMEQYERLNKRYEGTVLSIHDSLQRTCTGTIIMVLCGFWTTTEHPTTSTEKPVTLSITPNVDNVHFGPAGIGLLIMGFLVLGLVPFLLISCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPGGITTICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICPQHMEQLASGHPSISPHFGKTTVISENAYPSGPGVQHPMLIPDPLGYGNITVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVGPISGADLHGMLEIPALRDGTNVIVTERVIAPGSSLPNSLTIPNPRETSNVVVTERVIQPTSGMIGNLSIPP", "length": 911 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q803M0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3B", "gene_name": "ppp1r3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPIELAMSLYLSSDEFLNPRASKYSRPLQPCLNQCKSSKLSFSSLKEQSEFNGVSRALMIPGRAKKHVSFADHKGLALTVVKIFSEFDDPIDIPDNIDNFFTSSLTVSEGKDKLTLDFDQPSADYLKFRQRIENDHVCLEHCMLKEKSIMGTVKVKNISFEKSVKLRITFNTWKNHTDVECQYVKDTYTGSNRDTFSFEASLPEQVPSHERIEFAICYEVNGDTLWDNNQGKNYRIIQSALRKSSNESNGGHQQYSQSDWDIHFDRYGSPRCSRGIFPHWPSYVGYEDIGPYY", "length": 293 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80SW5-1", "protein_name": "Embryonic testis differentiation protein", "gene_name": "Etd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEKNPEAVPRPPEQNTELVPPKKSKSKKPANILIYLIDRHLGRPRNDMDLFEWVWTLK", "length": 59 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VJ6-1", "protein_name": "Zinc finger and SCAN domain containing protein 4C", "gene_name": "Zscan4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSENDPREVPGLQSRQEQPISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VT8-1", "protein_name": "S100 calcium-binding protein, ventral prostate", "gene_name": "S100vp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSTEQEIMELLMILQEFSVKKIDKLDVQEVKRLFREELPNFLKAMDEATKNKILNDKGKEMPFDEIWDMIGRMALEYRKKNSNALKD", "length": 92 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80XZ1-1", "protein_name": "Polypyrimidine tract-binding protein", "gene_name": "Smptb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRNSPPAAEGNGSKRFKGDSWGTRDPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYTWMPPVLRGQPVHIQFAHYRELKVSSSPSQEISLSQAGDSREATASSLVAVPGQAAASGQTAVPSQLGAQPCLPPEDSYQAGTVALAPPASAVDTELVVAWQSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASALPAPAMSSASPYASIALPHTFAIPQAAGLANPEVFKTLHPQAIQEVAMASSSSSSSTAAAAVGAAEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYGKALCILLSKHQSVKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSRMTI", "length": 588 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q810J1-1", "protein_name": "Pregnancy-specific glycoprotein 22", "gene_name": "Psg22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVSSELLSNGWTSWQRVLLTASLLTCWLLPITAGVTIESVPPKLVEGENVLLRVDNLPENLRVFVWYRGVTDMSLGIALYSLDYSTSVTGPKHSGRETLYRNGSLWIQNVTREDTGYYTLQTISKNGKVVSNTSIFLQVNSSLFICGRPSPPALLTIESVPASVAEGGSVLLLVHSLPDNLQSLLWYKGLTVFNKVEIARHRTVKNSSEMGPAYSGREIVYSNGSLLLQNVTWEDTGFYTLQIVNRYWKMELAHIYLQVDTSLSSCCDDFNSVQLRINPVPPHAAEGERVLLQVHNLPEDVQTFLWYKGVYSTQSFKITEYSIVTESLINGYAHSGREILFINGSLLLQDVTEKDSGFYTLVTIDSNVKVETAHVQVNVNKLVTQPVMRVTDSTVRIQGSVVFTCFSDNTGVSIRWLFNNQNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVRLTVMNE", "length": 475 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q863C3-1", "protein_name": "Gastrin-releasing peptide", "gene_name": "GRP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGREVPLVLLALVLCLAPRGWAAPVTAGRGGALAKMYTRGNHWAVGHLMGKKSVAESPQLHEEESLKEQLREYAQWEEATRNLLSLLQAKGARGHQMPPWEPLSIHQPAWDSEDVSNFKDTGPQHEGRNPQLN", "length": 134 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q869X2-1", "protein_name": "Probable polyketide synthase 17", "gene_name": "pks17", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTFNNIKDENNDDIAIIGMGFRFPGGGNNPYQFWNQLSNKMDGISKIPTEKWSRSFYEQKYINNEYGGVLKDEEWKNFDPLFFGISPKEAPIIDPQQRLLMTTLWEAFEDANIKPSTFRGSDTAVFIGMMNTDYQRCQFRDISYVNPYITPGTAGSFISNRLSFSFDLRGPSMTLDTACSSSLNAVYLGCQAIANGDSKMAIVGGVNGIFDPCFSMTFSGLNMLGHKGQCRSFDAGADGYIRSEGGGVCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNIIQPSMKAQGENIEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFEDWNIRVVTDEIQFPINKLINMGINCFGLSGSNCHMILSEAPINYDELLKTTNNNSTSSSSNDDKKEYLIPFSANCNISLDKYIEKLISNQSIYKDTILFKDFVKHQTISKSNLIKRKVITASDWDDFLNKRNETTSTSSLTSTISAPASSTPVIYVFTGQGPQWRDMGKALYETESVFKDAIDHCDKLLANYFGYSILQKLLSLESEDSPEIHHPILAQPSIFLIQVGLVALYKSFGISPSIVVGHSFGEIPSALFSDVISLETAVKIVYYRGLAQNLTMGTGRLLSIGIGADAYLEKCALLYPEIEIACYNDPNSIVITGSEQDLLGAKSTLSAEGVFCAFLGTPCSFHSSKQEMIKEKIFKDLSDLPESNVPCVPFFSTITGSQLSHKGFYNVQYIYDNLRMPVEFTKAISNIFNFIEENESYKNAIFLEIGPHPTLGFYIPKCKPSNSTITSKPIIVSPLHKKKEELTQFKLAISTLYCNGVEIDFASGQQLLPTSSSSGGGDISSFKESTNKLPRYQWDFEEYWDEPNQSKMVKRGPSNNLLGHDQFAGNTLMELFIDIDKSAHQYLKGHKIKGKYLFPGSGYIDNILRQFNGQDITIFNLEFSNPFFLKDGVQHHLQTSITPTTKGEFKVEFFIKDNRNSTKWTKTSNGRIGLFKHNPKNNKLDIEKLKSQCSFTTLTKSEVYNKLLLLSLPYGPTFQRVESCSIGDGCSFFKLSMSPCSEFDKDFLNPSIIDCAFHGLLVLSEGPQEIVFDRLQDMKFYSSNVPSTRPQFIYAFAKFDKIEGNSTHGSLNIILEDGTLLISIKNVKCTSLIRLKKQSIKYPSQNVYSHHWQSKDSPLTLIENQLIEEKSSESKINFEKLLNDKLFNYYLIRLLNQSIKSEFIEFDYKTSTVDTLDIGSKNAKLLEKIQSILNPIDSLDQSIDITSLKQAIIVKSSFKNEIKLVEKSIKRIVSLLKGGESEHFSPSNPSSPNDTPRNNSNNCSSKNNAASSDDADDDTNNEETINQLNNEPFNFSNSQFISNQNQLISKTIVNSFDRLINSIEIGEKKLIKIIDLSSIYQNYQLSKLLLLQLNQLLINLSNNNNIEIEYTIPSNTKNIDSITEETKSISNVLNIKYRSFDLQDDLESNGYLNSNYDLIITSLLLVSTNSIDSNEVLSKLYKLLLPKGQLILMEPPKGVLSFNLLFANDFKQSLEIKSEQEIKSLIIYCGFTKIETNLNTKDDEEQQQPPPPSILIVQAEKRDIESMSLTFSSDPKSLNSSYSNCIFIVSKEQKENPTSYIQEYFDITEFFCQNATIIEADDSELLTKTIESGVGKNDIIFFLVSLEELTIENYKQVTMQYTLVNQILLRNNLSTRFALLTYDSQNGGKNYLGSSLIGTFRYFLEFRSLNIFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPSNNYEKNTNNLFLYSNSNLDFSFQSKEKLLHGCVEIKVMSTGINYKDSLFYRGLLPQEVFSKGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSHVTTHQNKIVLKPENISFNEAAAVCVVYATSYYSIFHIGAFIADKESILVHSATGGVGLASLNLLKWKRNQLKKHGNSEISNDASIYATVGSKEKIDYLQEKYGDLITAIYNSRDTEYCDEIKQQSAQGGVDLILNTLSGDYLSSNFRSLSQVGRIMDLSVTQLVENDSLDFSNFKYHVGYNTIDLDRATKYNSKIIRDILTEVFDAISDGSLENIPVKVFPAIQVKTAIEYINERVHIGKIVVDFENFEQDILKPALQEKENPIQLNKVKKLEHTCDTLNNTILITGQTGIAVHILKWIISGSVLNSNKSQQQVTDFIILSRSSLKWELENLINQTKHKYGDRFRFHYKSVNIADLNSTRTAIDQVYSSCKNVSPIKSVLHFATVYEYILPENITQTVIDNTHNPKAVGAINLHNLSIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGGLDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLSSFNIDNLLSSAPQMKRKMDHHLTNYKTSSASSDDSLGDSGSTQAKVISTISELLSIHPSKLNLDTRLKDYGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTSKQTATKKT", "length": 2604 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q869Z5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPHVYHKIDFSKNEQFDPEFLKFSPNNKIPAIVDNTVEPNGISVFESAAILMYLSEKHQFTDLYADFKTDPALHAKHLEFLFFQMSGVGPMTGQLGWFLRQPEPKNTQAIERYSEEVKRLYRVLDKILSTNTWVAGEQYSIADISLLGWALYFLKGYYDDHITREQFPNVYRWLDLAAKRPAIIKVLETIQPKQK", "length": 227 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AE3-1", "protein_name": "Probable polyketide synthase 9/36", "gene_name": "pks9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLKNINLKEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFKEWKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHTNKHQDSVLKNAIAQSTSAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVDIIKAYSILSMLSKTHGKCKTFDESGDGFTRGECVGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNFLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTTMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNEIVFIEIAPHPTLLFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQSINLPLYQWDEELYFTQAQTLEQHRKEGPPIDHLGTSNSYNSPFNNSYRTSIDIKNKPFLYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPPKYNIKEIIENKCNLSKLTKNELYTHIKSKTGLNYTGVFQGVTECYIGGDCTLSVVSLESQTNSFLNIPILDTCLHGMIGLSNDQCQIVFDKAIGFKYYSSNIPANLKDYKDSVYVYSHLKSKSVDSFFGSIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNEVIIKSSRIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCRYLRKKNQMISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIIALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGFNVIYRPLKIDESLIETQSINPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCSMSQQSWCQLLKTCNFKDIAMSKECIFVGIVIHAQKPPISLLNSQPKRDNIIIYGGGNPIFVENIKLYSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNFKQITLEYIEINRKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLNTLDFDYDSTQNYINSNNKDMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNYKKIQIKPSNLSHNEASSIPIDYLTSFMSLFNIGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFNSNLFVTVNSYETKRYLQDNYGDFITGIYSNTDKSYVTEINKKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLAKYGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFELSLIQKNKIHKCLYEISNAFENGELKTIPIKEFTNLNIKDAIKYITNNKIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILVTGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINETKLSNNNIKFHFKSVDIGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYVCANALLDSFSKYRESLGLPSTCICLGAIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNAGKFTNSMLSNFKPSKFKNNQQTSLFLKFDYLMNLKNNSEETKIENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTISTSMKMILNSLMKNNQNIDDNNKDLPSNRIDYWKNEMKFEESIKPISNEIQSRNNSEKIILLTGTTGFLGGFLLFNMVRLDSCKLIYCLIRNKSKSNNPLDEIINNLKYHQLYEKLNQSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKKYNIPSILIRPPSIFLNPETGIGHISDFSLLSIQSCYELGYYPNQFENDFILINTITWLSNNITNIIMNDNCWTDSKMNIYNVHGKQIQSSLIIKPLEKHFNCKHINTNDWIDMVNNSNKKSCIKLKSFHSLDIILKSENNRYKPNENQSISLSTKSLLESMGSYNTDLEITDKMIISHINQIFNLNETI", "length": 2931 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AF8-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSKFSIKENKPKKVKSNSSKGFNNNEINSTNNNNNNNNNNNNNNNDSDNFINNNDSNNNNNFNNNNNNNSNNINNKTEDSNDISLLINQFIGSSPAPSTCSGSDKFSIKPKKIVTPSKRKNSTSGSDIIDFNNCNNNNNSKSNSDSNNNKYNNSNSNNNSCNNTNNGNERKMKGYDYGNNNSNNNYSSSSRDYNSNNNSSPRDYNNNNNNNNNNNNNNNNNSNNNSPRDYNNSRDYNNNNTNNNSSPRDSNSNNNRNSSSRDFSNNNSSPRDYNNSRNSNNSFLNNNNNNNNNSNNSNDNSPRDYNYSSSNSSPRDYNNNNDTFSKKRNNVGNSILEIKSNPTSPRIKPIMVWPRSSPRIVNKLPPVQSLVDLTEIEMIDDNNNNNNNNNNNNNNNNNNNNNNNSNNNNNKSGSNNNFSDSDSDKDNYNNNNNTNNNSFNSDSDNYNNSNNNNSNSNSNSNSNSNSNSNNNNNNNNNSNNNNNNNNNNNSNNSNKSNNNFSNIKILEKRRKSINEISDNLTTRNIEEIDSKMAHEFEHPFLEKLIFAGQRPPFVECDDYFLKRYKNQFQYYLDISMKSIINTRDIGEGDDDDEINSVPFKCTLCSYEYDEENNNENTNGFIDEADKIYNRSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNNNNNNNFYDKKYFKNNYFQHLLSKHLNQIKAKGIQDTNVYNDEANIPLGSKKCDHLECSEIILKNEFTKHIKKLHHHHKDEDIDICPRCKILKKSIQKRIVKFSKKKQEKDDDNNSKPVSNKVATISHNPSPNNIDKDINNNNNNKNNKNNTNNLENDNNDNSSNNNYLENEEEPEIVFQDIKPNNNNNNNNNNNNNDDNNNDNNDNNDNENNNDNNNDNENSNNNNNNS", "length": 901 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86BK9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "Dmel\\CG32971", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQELNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAMHAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV", "length": 145 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86IJ5-1", "protein_name": "Uncharacterized protein DDB_G0272718", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPPHGHHHHHHGHHGHHEHITITPVYAPPQVVQPIYAPPPVVQPVYVQPPVVYPQATIVLETGHHHGHHHHHGHHGHHDHHHHGHHGHH", "length": 89 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86IV6-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFFEKKNNNNNNSSNNNNNNNNNKNNNNKNLDKNNSSDRNNNNNGDKNNLKPTQKSLIDLWFQVDDEDEEYELSSLSNDGGSSFNSFKVNNRDTSIGSDIYSKTITPSSLALSTSSLISSTLTPPTQSPPFSKKNEKTSSFLNSPSSQKSKSNNSNVKEKLSPQYSSSSQLSDFFKKKKRPLLDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTISSLNTNSNNNSSGSSNGSSSSSSGGGNKSSNNKKQKVSQSTSSTSLKEKQSQQSILSYLNPTPSLPTPIFDKPIERSDSNLATSSFSKLNFDDIPLDDEELSQKINTPSPKLILKNTFSSTPTQKSPSLSSTPPNKIKITDKKLPNSSSSSSSPPPSSAKSKLSHRSQSSPLSPLITNLNQNKSNEFDDINFNFNIPSPLKEINNKPNIKSNSKETLTPLTQIFHSSSPPPSIIIESSPSVCFSPTPTKNQSPTLSNLSPTFSFLSDTSPVKSPSQLFEFTFDDPLSPKLISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTFISKNNLINLFNEQSNQENVSTTTTTTTTTTTSTSTNNNNNNRYERVLIINVFYEVTQIFNNSNDKIHKKTLSGFSESIGESREIQLLDEWIYTPVRPGDIVNVIGEFDDNGEIIINNIQNLLILHPDILITGTELGGSLTCTRRSVLKEQIRVGNSNSSTVPIFGSIVHEIFQECLKNNRFHLDDINTFKQEIIGKSTFQLGLSSLGETQDTALNHLENWLPTIDKFAKTFILPSSSSSSASSLKKNLIEINSEKWHLSISKILEIEENIWSLMYGLKGKIDSSLEIKLVKQQQDEKQSKQSKQSKKKKQQTTSPNNNNNNNNNNNNNNNNNNNNNNNNNNGPTTCYLNVPFEIKTGKPYQIPYISHSSQVLIYTLLMNDRYDQDIEMGILYYLKSQEFKSVGLNYGLLHPILFERNQIRSLIVSRNLLAYFLNLNSQPLLKPNPILPEMLRDYHSCTKCYSIDPCVLYHKAIENGDQFTSSLGDLFLEKTNHLSSIHINYLKNWNKIISLEYSIKNNKRKLIWNKSRKFGEKNNSCIGELILISEEYSEITETFSYRFRVNPDKLLNSSISEGDYLLISVEDKYYGMGSGQLSNIINDIITITCREKLSEPPSLLSDYTTPNCNNNDPSYFGNYRNKPLIYIEYEDADQQQQQQQQQQQQQQQQQQQQQQQSQKQQKQKQPNFTQLRGLNNYVNNSKLTPFKWRVDIDEQLSGLSIVKSNLFNLFLKENQKLRSLIVDLEAPIFDKLEQENYWKSIDFQNDYPLLNIDQRNAIIKTLSAKDYSLIHGMPGTGKTTLVISLIHILWRLGKKVLITSFTHTSLDHLLLKFNKQYPNIEMLRVASSLNQIDPSLHRFTLEKQSFGNITQSKQYLERQQLVATSCLGINHQCLLKMQFDYCIIDEASILSQPISMGPILKCKSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCGNQSISNLSLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESSNGDLFYNQTEANIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSILKYLSIENNNNNNNNNNNSNNNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNNNQNYLKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFVGSKSSLSKFPFFLDFFEFLDSKNWIYNLNNKIQF", "length": 1838 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86JI5-1", "protein_name": "Probable polyketide synthase 5", "gene_name": "pks5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDMKLNDIENENFINQMKGVAIVGIGFRIPSGNSENSISSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSDAHHIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHANKHPDLILKNAIGFSPSTLSNRISYCFDIHGPSLSIDTACSSSMNAVTQGYHSILNGTSNMSIVGGVNFVIDVETIKGFSYLNMLSKTHGKCKAFDESGDGFTRGECAGVVVLKKLDDAIRDGNRIYCIINGISSNIDGNGIADKANFYSPSKQSQFNNINLAFKSTNGKISVNDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVVSLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRNNEKSVSMMINNFGVTGSNCCLLISEFKKQDYESYENNIGSINKNILVPFSANSPKSLDQYQSKIKNIINNQFNFIDFANNQIYSKSNYLYQRSVVIANNSNDLVNKILNKKHIQTKNPIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGYSVLEKLRSIGDDDTTSIHDPTIAQPAMCMFSVSLFELYKHWGVNPSFILGHSLGEIPTSYCSGMIDLDTFCYTVYQRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESKKSKVPTFSTVTTNLFNESDPFNSQYVYDNIINPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQKINLPLYQWDDELYFAQTQVLEQHRKEGPPIDHLGLSNSYYSPFKNSYRTFIDIKNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHTIEMPPKYNIEEIIKNKCTLARLTKNEIYTHIKSKTGLNYTAMFQGATECYIGVDCTLSVVSIESQTNSFLNIPILDSVFHGNISLINDQCQIVFDKVHGLKYYSSNIPNDYKDKSVYVYAKLKSKTSDSYSASFTVLLSDGTVVYEIDEAFSKSLIPIKELLKIEYPNDELFSINLQPKDSPIPAPSTFKSLIYENDRFNAEPPMVENLFQYISTIFYKNIINRCPEINIDIIKSLSIDEIISNFSKISKHERLFKYVFETIKENGILNSLEEKDDTYFVFNEVLIKSSRVISKLLFPLENDNDNEDTPQLLFQNGLMDKVYKCRYLKNKNQMIAHIIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIVDTKNKINKIIKGAGITNGLNVIYHPLTIDESLVELQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLIPNGQLLFVEPPYKSIICDSLFGSFEQWWAFTDTDIRKDHCCLSQDGWYKLLKWSNFESIEMSTESKFMGSVIQAQKPSFTSLINQQPKYDNIIIFGNNCPNFIDNIKPFSNFNEFIQIETIQEFDQLINKSTITNDSIIYFIKSINQLSLDNYKQATLEYIEINQKLLQINSLCKHVLIVNDSRKTNYLASSIVGAARYFDEFQQLKLHTLDFDYDSTQNYLISKNNKMVQFINNLIDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFEQQDNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDEIKQYLLNNYGDLITAIYSNTDKGYVSQIKNKLIEQGSNDNGVDLILNTLPSDFMDSNFQLLAINGRIIDLSNDHLNQSEYMKNVNFTLNRGYHNFDLMSQRNSRINRSLLTISKAIENGELKLIPIKEFSNSDINDAIEFIIEENRIDKIVVSHDHEVYQELYAKFSNENDFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQEIINIHSIFHFAFTQIACKVQEINMKHLDISHGAKTMGAINLHNQSIKRNWKLINFVISSSIASLVGSTDQCSYVCANALLDSFSKYRVSLGLPSTSINLGAIESTGFVSKNESISVFLDGSGIIPTPINQVLGLLDLQIQNPGKFTNSMVAKFNPLNFSNNEQINLLLKMDYIFNLHSNGYTKVKESAGSKNVDELFIKKISDLFSIDESKINKDIRLIDYGADSLVIVQLKNWVDQEIGFNLITIQQLQNNTINVSIKIILNFLKKINK", "length": 2512 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KS1-1", "protein_name": "DNA cross-link repair 1 protein", "gene_name": "dclre1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDDEDDINLYITRSKNNENKKTNKNRLIDNNIQKTKTTTAVLTTRTTTTTTTTTASTQLKWDYGDEDDDDYSAPKDIDEEQSSKQFNYQNNQIVVKQDHDDYSAPKDMDEEQSSRQFNYQNDQTLVKQDDDHDDYNEPKDIDSQSLIDEDCDFEFDNSDFFFDDGTTNNNDNNNKNNKNNNNNNNNNNNNNNYNNNNNKNYKRKYYQSYNNSNNINNNNNNNNDKFEKRLSDLKKTGKEEAKKRGYQVRKTPTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIVRKENDGETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDINKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRGPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDSPIKVKNILAHFSDLYEKKKQLTIASFFSAQPVTNFFQSFFKSKSEPIIDEDNKKLIPITTTTTTNINTLTATDTTTTKIKTSNTLIKDEFTDDLIWDCSDDLISDRKLLTQSDNSSALCKIEKEENFNDLSENNNNSNNNNNNNNNNNNNNNNNNNNNNNNNKLIIENDIKEEIIDFDDPVFISQQKWIEKQIYNNNNNSNNNNFTTPTKTNGNLSNNAKLNLTPTQTQTQTPTQNNKKQKTTNVSPTSYNSNNSSQQSGLKRSKSDPNVKKNQLQTSQPPSQSLITSFFQKCASPTSLFSATPPTPSITTTSNQSTKNKNSTTTTSTSTSNNKPFKN", "length": 920 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KX6-1", "protein_name": "TNF receptor-associated factor family protein DDB_G0272348", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFELEDITIEQSSFTNNNSNNNNNNNNNSNSNNNNNNNNNNINNNNNHNNNNKNNSNNKNEINNQLDIPISNLVVDKENISKKYFCTICSDLLVNSFHADKFKAVQCKNGHYTTCLNCWEKHLEKKKNCIQCGVDVESIESLSSNLLVTQKFTTFKIHCPNSFFDTIDFIKDEVNGCKEIIQINELEEHLKECQYGFISCKNCEEFSKLPFQEFTQCPDFRKNTKEQHDLICPYVKISCEYCGDIINKINKESHNANWCQEITIKCLDCHLPFKKKEINQHQKSFCPETIIQCRYSKGGCNAMIRRSKLSQHLTEGDNHHQFISNILNQQDLKINELELKNTEFCLLLNGQNKKITELEILFKELNDSILIQKQQQKQQQQQQQQQQQQQQQQQQQQQSQQQQSQQQQQSQQQQQSQQSQQNNNSNSHFINNNNNNINNVQMSDSPNGGSLPQAVYKNKWVISNYSEQEQQGISKDYIKSPLFKIGNSTFFLKWFPFGKKKLNYCSIFLYKTQDDKSIIVNYYIHLVNNQISDEVYEKRGCQKYDSENGSAGYGSSQFIKRADLLNDANGFLINDSITIEIEIFATEEILPLQS", "length": 595 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BI41-1", "protein_name": "Syncytin-B", "gene_name": "Synb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGFWVLCFVLFPSSLSYPESWMPLVNLTHHILRDTNSSLFSNCWVCLSTQTQRSLAVPAPLSIWTDTPMKLHLTYSVRPFSGSFSISDIERRLRLFRPLTASYSFHNPDRRAIAFLQLVSSTGIFRIITRITSVIYPHKDRFFESAQRPLWGPLFTETVLRSQAPLCISRFFKVSAYATFVGNLSASLCNYTMHISPSTSHENLDLSTTHTFKQAMKRPDAKWKNPLRFSGPPSLIFSKPAYYPCPTDIKHCHTSPATPWMHCPQAPFGTCYNLTLFEPDNSTHPVTMSVNPTHFKVKLQGHRDPYPLSHYQPLTGAALSGQYSVWENEITVQENWDITSNIFSHLLSFSYAFCLNSSGVFFLCGTSTYICLPANWSGVCTLVFQYPDIELLPNNQTVPVPLFASVLSSDSVLRPKRSPHLFPFLAGLGISSALGTGIAGLATSTLYFQQLSKVLSETLEEIAASITTLQNQIDSLAGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGIVRDAARKLQERASELGQHSDSWGQWPDLGRWLPWLTPFLGPLLFLFFLLTFGSCLLNCLTRFVSQRLGSFVQDTAKRHVDSILQNFQYKKLPQDSPDEDTIPT", "length": 618 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BYG0-1", "protein_name": "Tetratricopeptide repeat protein 24", "gene_name": "Ttc24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSSRQYGLSDVLRALEESRKLADADRSTDQGLLGPFYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPSEQATVLQNLGMTHNVLGNYWEAQEFHQKAASLHGSVGQRWEQGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGAAAARLGQHDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQEKIAQARFLPSAPGKLQTSRKAKTSARVQSSAEDAQESQWEGEASEGGHEKKEMEGLVNTATVLGPQRQNRATTHLPSGGPSPSGEEYPFIIAPKKLRVSRSSTWAKEALGRNFQRTRIQSGLCSIM", "length": 334 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1N8-1", "protein_name": "Alpha-defensin 22", "gene_name": "Defa22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKLVLLSALVLLAYQVQTDPIQNTDEETNTEEQPGEEDQAVSVSFGGQEGSALHEKLSRDLICLCRKRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1P2-1", "protein_name": "Alpha-defensin 21", "gene_name": "Defa21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALILLAYQVQTDPIQNTDEETNTEEQPGEDDQAVSVSFGGQEGSALHEKLSRDLICLCRNRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5Y2-1", "protein_name": "Mitochondrial sheath formation-associated protein", "gene_name": "Misfa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVLGWMLFVGLATYMGTFPEAMPPTLKWKERLPGQENKARRRIQALEEELLL", "length": 53 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDW1-1", "protein_name": "Protein FAM228A", "gene_name": "Fam228a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADTKTSKCDEHFSVEKLKEWPEPESVSLMELLAREDIDEAVHAVLFRENYVVKRLDTYLQHLAVFKERRKEMLHKKWVENVVQPLQQRITDKITSYRRPGKNQVKYEHCLKQTNKPTKVSSSCLFQKQQEFREAKGTSYQHGRGKTHDTQKEAKETEKGLSFTPFSLRPHCSSPRERQRASARLMQSKPGGRNRYKGASSEKPVFTLKSHLPKEEKTVSRSQLVFERQFRASRLSQDIKEAEKKGLVVGTGPQRPRSWAAADSVPRPSLVGRRVMTAEILGEHLVSLHQAARSGLQWP", "length": 299 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CEK3-1", "protein_name": "Serine protease inhibitor kazal-like protein, minor form", "gene_name": "Spinkl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSTWIKFLFILTLVLLPYSVFSVNIFAGPENVIKEPNCTMYKSKSECSNIAENPVCADDRNTYYNECYFCIEKVVEKLKYRYHGICIYK", "length": 90 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZP1-1", "protein_name": "TBC1 domain family member 3", "gene_name": "TBC1D3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K072-1", "protein_name": "Receptor expression-enhancing protein 4", "gene_name": "Reep4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSWMICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPFYYEFKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGKRSLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSIPDTPVPTYQDPLYLEDQVPRRRPPIGYRPGGLQGSDTEDECWSDNEIVPQPPVRPREKPLGRSQSLRVVKRKPLTREGTSRSLKVRTRKKAMPSDMDS", "length": 257 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8MP30-1", "protein_name": "Uncharacterized histidine-rich protein DDB_G0274557", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKYFLVLLVGFLLVLPSIVNPYRKGVTITNQQPKINIYQLDVNNPHNPNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNPHPHPHPHPHHHHHHQEASECLSYQGNRNRLFIKRDY", "length": 233 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NG83-1", "protein_name": "Olfactory receptor 2M3", "gene_name": "OR2M3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARENSTFNSDFILLGIFNHSPTHTFLFFLVLAIFSVAFMGNSVMVLLIYLDTQLHTPMYLLLSQLSLMDLMLICTTVPKMAFNYLSGSKSISMAGCATQIFFYTSLLGSECFLLAVMAYDRYTAICHPLRYTNLMSPKICGLMTAFSWILGSTDGIIDVVATFSFSYCGSREIAHFFCDFPSLLILSCSDTSIFEKILFICCIVMIVFPVAIIIASYARVILAVIHMGSGEGRRKAFTTCSSHLLVVGMYYGAALFMYIRPTSDRSPTQDKMVSVFYTILTPMLNPLIYSLRNKEVTRAFMKILGKGKSGE", "length": 312 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8NGV6-1", "protein_name": "Olfactory receptor 5H6", "gene_name": "OR5H6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLYLCFIFQRTCSEEMEEENATLLTEFVLTGFLHQPDCKIPLFLAFLVIYLITIMGNLGLIVLIWKDPHLHIPMYLFLGSLAFVDASLSSTVTPKMLINFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLYPVIMTNELCIQLLVLSFIGGLLHALIHEAFSFRLTFCNSNIIQHFYCDIIPLLKISCTDSSINFLMVFIFAGSVQVFTIGTILISYTIILFTILEKKSIKGIRKAVSTCGAHLLSVSLYYGPLTFKYLGSASPQADDQDMMESLFYTVIVPLLNPMIYSLRNKQVIASFTKMFKSNV", "length": 325 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R264-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r215", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNWNNIIHTIIFLSLTGPGIVGNMLIFIRHIYMPALGTEKKPVDLIVIHLAFSNMITICTTGIKDIATVFYFRNFLGDIGCKAVVFLARMARGLSICTTCLLSVVQAITISPRTSLWTKLKPQTACQIIPFILVFWIFNGLISSNLLSYIKGGSSLNRSVAATFIGHCYMLQSRHTIKWIFLSLMTLRDVIFQSLMGWSSGSMALNLYKHHKRVLYLYSSRFANNSPPEIRATWSVLILMTCFLLFYWADFILSFYHGFTVTHESILLNIKVFLELGYVSFSPYVLISRYIHPPNVFHAH", "length": 300 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R272-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLQFIKKTIFLFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLTFTNIILLLAKGLQKTIIVFGLRNFLDDIGCKIIVYLERVARGLSICTSSVLTVVQAIIISPRASGWRRLRPKSAWHILPFFSFFWILNAFISVNLIHSIRSKGMNTSQHKNSDDYCYLTPESQKIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQHVLYLQNSKLLYRTPPELRAAQSVLLLMLCFLFFYWTDCALSLFLSLSLGDSSLMINIQGFLTLGYAIFSPFVLIQRDGLIPVCWHAQ", "length": 298 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R278-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r213", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLALRNYIQINTPWCMCLFVTPLTPCLPEYWDPDSLRVEGPTESSLRHNTASCTLKNTIMQNVQFRSMSSITDAFFKMYLHTRKEEMILKILKEITFLIMTVLGILGNMSVSVNYMFSWWGSPEKKPIHLILIHLIFTNIIILLVKGLPKTIAAFGLRNFLDDIGCKIIVYMERLARGLSICTSSLLTVVQAIIISPRASGWRRLRLKSAWHILLFFLFFWILNALISVNLIHSTTNTRLNVSQLKSDDNYCYFMLPIQKIKWIVLPLMVVRDAVFQGAMGGASGYVAFLLHKHHQHVLYFQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLFLTLSSEVNILMVNTRDFLTLGYATFSPFVLIHRDGLLVECRHVQ", "length": 384 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2A9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r229", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFGNLAMGIVLSLQSALGILGNFSLLFYYLVLYNKERTLKIIDIILIHVFTSNSLIIFSKGLPEVLAVFGWNDLFDDVGCKLIMYVRRVSRSMSISMTCLLSVFQAITISTRNSCWKEFKEQTAKFMGLFISLCWILFMLVNMLFPVYTSTNRNSKNKTQKKDIEFCHSVGRDKMVDIMYTAFCVFPEVLFSLLIVSSSTTMIVILYGHKKRVQHILHTHASPRTSAENRATQTILILVCTFLAFYTLSSVLQGYVALSHDPSWWVMNITTIISMGFPAIGPFVMSRDFTVSRFCFTCIGNLKLP", "length": 306 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r178", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHDKSLKTTDDMTLQILLLCQFVVGTVANVFLFLHNISPVLTGSKQRPRQLILSHMSVANALILFLTSFPDMMAFAPRNSPTHLKCKLEYFSRLVARSTNMCSTCVLSIHQFVTLVPVNRGKAILRASVPNLTSYSCYSCWFFSVLSNIYIAIKVTGPQITDNNTDSKSKLFCFTSGFSVGIFFLRIFHDGTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNFICIIFYTFSIDSRLFMSHFSKVFAAGFPTISPLLLIFRDPKYPCSVLFNC", "length": 304 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r64", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKTLKTMEVLALQILLLCQVVVGTVGNIFLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLFAYSYDLIDFVPRKPPTDLKCKLAYFFNMVAQGTIMCSTCLLSTYQFVTLVPGNWARVMFREISPKVVSYCCYSCWLFSVLNNAYMPMYVSGPQKTHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFIGIMAWTSVSMVIHLNRHHHRMHYLHNPNQINRGHAETKAAHTIMMLVVTFVSLYILDCICSLFHISFVESRLWLIDVIELLHLSFPTVSPFLLICRDPMGPCSLLFIVGLEIHVTVGAITEEQ", "length": 320 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDFVPRKPPTDLKCKLAYFFHMVAQGTIMCSTCVLSTYQFVTVVPGTWARVMFREISPKVVSYSCFSCWLFSVLHNAYIPMNVSGPQKTHNDSDSKGNSICSISGVNVDMHFLRFSHDIIFLGIMAWTSVSMMIHLNRHHQRMNRIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFHISFVESRLWSRHVIKVLALSFPTISPLLLIFRDPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2C0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALQILLLCHVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLTDIVPRKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLNNAYMLMNVSGPQKSHNDSDSKSNSICSISGVSVDMNILRFSHDIIFLSIMAWTSVSMVIHLHRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFYISFVESRLWLRYVTKLLALSFPTISPLLLIFRDSKGHCSLHIMSVWKST", "length": 300 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R4R9-1", "protein_name": "Protein phosphatase 1 regulatory subunit 14C", "gene_name": "Ppp1r14c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVVTGGGEAAGGTSGGGARVFFQSPRGGTGGSRESSSHSGSSREDSAPVATVAAAGQVQQQQRRHQQGKVTVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPDVEIDIDDLLDADSEEERASKLQEALVDCYKPTEEFIRELLSRIRGMRKLSPPQKKSV", "length": 164 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R4V1-1", "protein_name": "NFAT activation molecule 1", "gene_name": "Nfam1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESWLLRRGARVRCLHPPSWLPAWCFLCLLPVPQTLQLTGLVSLTHTSLPIMVSLANTDVFFSCRIEDFTRLQRDLPVKLFHTDIHGRRRWEKQINCQHRPGMENHTRDCMVKLSQANTSATGIYYFIVEGEETYQSDGVVILVRDTVYQPPAFKVQEALMLGFTSLMSVLGVLGTALLLWKKKQISVLGKHTAKTCSGLKSTVGTTKPPAESVYTSLQRRETEVYACMKEETGSPVFSQSPATKEKLNRFEDDNEFNLVYENL", "length": 264 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T277-1", "protein_name": "5'-AMP-activated protein kinase subunit gamma", "gene_name": "prkag", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWYPGDEDEEFTSIIENIEKKETQEIKIKTEKLRQASLNQLPIEQSEGVGGGELSEYNNNTTNNNTPTNTTTTTNTNTTTMNNSNNNNERILSTSNGFDIRLPPNSIEQPSPSFISSSQDGVLTVDPLAVDGEKGNKESQSPPNGDNQILNNNNMFFKDITSLPSTDNKSSTNTNNNNNENPLKQTISSSPSKSTTTTTTSTSTTTTPSLSSLSSNNNNNSNSNNNYINHSSISTVSEGLENLNLKSGIKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISVERPSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNSILHILTHSRILAFMMKSFPQLPEKLLSIPIGSLGIGTFATVVTVMTHTPLVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLNLPVHQVLSTFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDSSKKVEGILSLSDILNYLLNDVKSINH", "length": 577 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VEU4-1", "protein_name": "Olfactory receptor", "gene_name": "Or14j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVENITTMRGFLLMGFSDNHELQILQALLFLVTYLLGSAGNVIIITITTLDPQLQSPMYYFLKHLSILDLSSLSVTVPQYVDICLTQSGYISYAQCMLQIFFFTGFAWGEVAILTVMSYDRYVAVCLPLHYEVIMGPSKCRWAVTAVWLSSVIPGTLYIASIFSIRFCGDRIIHQFFCDVPQVLKFSCSDDYLVTVGVADFLSAVAFACFIGIVNSYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVLLFLSTGIFAYLNPTSDSPTALQFLVSIFYTVLPPTLNPVIYSLRNETIKSVIRKLLLSSKFTG", "length": 312 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VFX0-1", "protein_name": "Olfactory receptor", "gene_name": "Or5b101", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENRTEVRCFILVGLTNDPSLQLPLSITFLLIYIITLIGNLGLILMILLDSRLHTPMYIFLGNLSLVDFCYSSTVTPKVIAGFLTGDKIMSYNACASQMFFFANFGDVENYLLASMAYDRYVAVCKPLHYATTMTTHMCASLVIGCYICGFLSASIYTMDALSLSFCESNVIHHFFCDVLAVMIVSCSDSHVNELILIYVVSFNMFFALIIILISYMFIFTNILKIHSSAGYHKAVSTCASHFTAVSIFYGTIIFMYLQPSSSHTMDTDKIASVFYTMVICMLNPLVYSLRSKDVKSAFTKIVLRSK", "length": 307 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VY69-1", "protein_name": "Vesicle-associated membrane protein 723", "gene_name": "VAMP723", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK", "length": 217 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ67-1", "protein_name": "Uncharacterized zinc finger CCHC domain-containing protein At4g19190", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGEGEGSGIRLSKRFAGGKVTGGSLEVDYKTKSGTAWSHSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPESAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELKQKPGLSPPRGGFDPDDPNQQIVAEDIFDEYGGFLEGSIPIEILKSMSSDKKRKSKKNKRHKKHSSRTVEETDESSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRKHRYSTNRRRN", "length": 595 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q91V82-1", "protein_name": "Beta-defensin 8", "gene_name": "Defb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRIHYLLFTFLLVLLSPLAAFSQKINEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK", "length": 60 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q923B3-1", "protein_name": "Neurotrophin receptor-interacting factor 1", "gene_name": "Nrif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTLPTTWPHESVKFEDVSLTFTEEEWAQLDFQQKCLYREIMMENYSNMISVEHHFSKPNVISQLEKAEDCWPMQREIPQDTLPECSWPSPDPGMNSFPSKSPLMKIEVVEVLTLNKDVAGPRNALIQSLYPEDLNPGNLKPAQQPSKRLTDTEASRQKFRHFQYEESAGPQKAMSQLRKLCHQWLQPNTRSKKQILELLVLEQFLNALPEKFRVWVESQHPEDCKAVVALLENMTSVSKDDASLACSSEATDQLKEKRKGVATLPVTFAAEVPAEEPVTFQDVAVDFNEEEWRLLGPTQKTEYHDVMLETLGNLVSVGWEPTLGNRELTPDSPIPVVKPIHDPNTNDLSRNGTQSTVFESILEDGVKEMHSIESNQVGNLQEKGHPQKKFSESSKSQDQTSRHKSQGSLNEVLPRKYVKVKQKGTGKRKGRTNTISMTRGLRIRKQQKDSVEWQGRSGSTPVTHGSSIKKQQQGSEQGKPGTSRDPITLTVPAKVYQKATGSEESIFMDSSDAMVPDVPPKIHQKGPEWHKVGESNNSMLQGSSVQNHQMESGAGRASDNSLLTHALPVKSHQKGYKEGNVQGNRNSWKHIKPHQKGSKGERVEELSTSEKHVPYVKNHLKTSERGKDREINASIKCDPYIKTYYRGSDVGRLRRANNCRKAFSLHAQQISFIKIHKGSQVCRCSECGKLFRNARYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCERCGKAFRQSSHLTRHERTHTGERPYVCIKCGKAFTQSSHLIGHQKTHGIKFKKQPKL", "length": 828 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q924S2-1", "protein_name": "Inactive 2'-5' oligoadenylate synthetase 1C", "gene_name": "Oas1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENGLCSIQARELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTALKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGDFSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSNKNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDPADPTRNVAGSDLQAWDLLAKEAQTWMQSSCFRNCDMSFVPTWDLSPERQECAFQ", "length": 362 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925U0-1", "protein_name": "Oocyte-secreted protein 1", "gene_name": "Oosp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPFVGLLGLLLLLSFMKTCADDWTAISLQCADHWFHLRIRPTIFHNIFMEPDEVFLGIGCPVTTTWPNDTYEFIYRTYSCGIANKVLCDVTLLKTQLTYISKNASLQAEMSLSCVMHNQSPHFCEAESRGDFTGDPPGWTEDMRARRDEQTVPMVQPNLSTSSEDHHVSTEPWASETSRSEAAEVPSFMDQNFSVFHFSRM", "length": 202 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94490-1", "protein_name": "Ubiquitin conjugating enzyme E2 B", "gene_name": "ubcB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAAHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK", "length": 148 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q945S5-1", "protein_name": "Vacuolar cation/proton exchanger 4", "gene_name": "CAX4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSISTESSSNLSLLENGGGGSDKPTAETSRRVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQREDVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPSSKLLF", "length": 446 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ", "length": 386 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99N64-1", "protein_name": "Germ cell-less protein-like 2", "gene_name": "Gmcl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C7P4-1", "protein_name": "Putative zinc finger CCCH domain-containing protein 9", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADAGDNQQEAERRSDETESRSIKEPKEKEDEDENPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSGARPEKRSKIVPDFQMRDPRHHDTEWRFERERMERIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQRDSIERQRREAQENLQQQRQRDSIERQRREAQENLQQQRLQDMPENHNVDDQQNLQEQRRISIEKERTEARLRLEQIRPTVSFPINEFIRAVVLLRELIENWDDKAWKK", "length": 321 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M4-1", "protein_name": "DNA-directed RNA polymerase subunit 12-like protein", "gene_name": "NRPB12L", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLQQSETDDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKRILDKKETRIGV", "length": 61 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQK8-1", "protein_name": "Small proline-rich protein 2A1", "gene_name": "Sprr2a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWP4-1", "protein_name": "Lymphocyte antigen 6K", "gene_name": "Ly6k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFLVALLVVLGLQLVQSNALTCHVCEAQNSYACSNPSQCPGEKKFCLLAVTRIFERFFYVSKQCTRRCPTPVVSPPSTNPPSEPKEFLIEKPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGFMVLTANGLSALCLL", "length": 154 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D541-1", "protein_name": "Coiled-coil domain-containing protein 7A", "gene_name": "Ccdc7a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCAKHPSTISMKLTSVPELPYKKGLLNSSPKPKEKHNAKSKYGKNESMVLRSPPTGESIVRFALPIPLSKTKDKISADEMVRRITTNLKMVVSNLEDTYGACYDNGEKAAEKSEAEGLSIGDDVSSFLLCCSQFTSQLEEAVKEECGALESLYKWFQQQVNQMEEISKDQSNLEELQSDGKTASLNIVQIAKLARKFEDFKSRLKTRKEVMQTKNEDKEIMAETLKHYGLMEKQIEEFITSHSALESQTETESQSGTPSVTTRMARMIKIFENQSTMLEKALNDQQTIESKYKQLETDFQMLIMEKTLLEAEIRRLREIERVKSAAKEEQTKKSGKSEKKKFKEKEKNLSPNREFKSIEELLQIQKEAELLKTEKKTLQGQLKWALEEAERNKTQLEFVLHQKMEMFKEESKTKVGQSQNKSKVKIEDSKDSLPKKSDTQLGGQRKDQISSDQSKRPKKKQLADIDPSAVEDFPPETFKSFTVMPLIEEHRESISSQPKEEMAKASEQSEAEDIEGPLEIPSESSNEDDDLLPEDESPMMEQVTDVGRYKSIYISAEPIDTMSLISRTQSEMETLEAINYDNVLNEGEEQDKKIGKDSDTGRKSKRKRSSKIRKLSTHEEESDIVHYEEATKAKVPSKKRASDPYGDEAYESRGSVSKAQTYTKKQGTHQRGRGSASDAYGDEAYESRGSISKAQTYTRKQGTHQRGRGSVQEEESDTVHYEEVTRAKVPSKKQASDPYGDEAYESQGSVSKAHTHTKKQGTHQRGRGSVHEEESDTMNYEVPRKSKISSRRKGFALPITHQVEMHSSESQGSISKSNTETKKQGTHKRGRDSDADGARTPVSQGSDSKADTERKKHRSKEESTISKDSIPVLDEVQDKTFEHQESGLRLEVQAKKLTFSSQNIHNEESATDIKVEYQNVPSSSQVQLKKQKPLGGEIFTTHFVVPAESHAQLYQTHTPETQIERGTTSGTARLTTIPVEHPKKEASPDNLFPEKKLYITRAPTQTKKQYPPWDAKAETQKKTVKEVQGISEPQTKLNPTMSGIILHLDMDRVVETDLENLEETIVPHVLRSELEIGTDAKNMPETPTSREAVRTEAKGNQDVTISIAKGMKLIGKLKDQHGLSSFASKDTISPGKSLIKSSRDNQDDSLLETKPQENTSDKYHPSKTFPTKVINMLPFSEKSLGSTSANVDVAPKPVYRASRGRSRISKALQQLLKTSEHLKPTSTKNQNADLEKHLYISVRSANKHTQKDKKHGQSNNQKLKKQGALSSTKKQKHKEQPKTETIVENNDKFDDNLMMTTSSPNIKIIKELSKTLNLDGGDIELSDFVFKTASAAKKLENKGPSKTKNLNKESSRDIHILHLTTSAIRTLLLDEEAKIRSLEKKLMKQSTILQKSVSSMKKFMFEEPSRETKMKRKKREKRKIVVKSPHILPITTTQKHTIKEKSEISNLEKPIVRGTDILKKSTSARKKRVLKGKSKSATLPKKCDNFPFDLVRSSSDSSKQEVEEQPKPGNVDKKVSDDSYSPDISTTPTKKHTLKGQSKSRTIYEKGVDLPNNLVLSKSASSIQEFEEQPQPGNVDKKVSDDSYSPDISTSPTKKHTLKGQPKSENSDEKGIKRPNNLHMSASVARKRLLKALSTIP", "length": 1642 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5R2-1", "protein_name": "WD repeat-containing protein 20", "gene_name": "Wdr20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEGRGKETNEIKTHFTTREGLYRLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQTGNGNRLCFSVGRELYVYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSSGNMYSYNVEHTYGTTAPHYQLLKQGESFAVHNCKSKSTRDLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGRGHKSWVSVVAFDPYTTSVEESDPMEFSDSDKNFQDLLHFGRDRANSTQSRLSKQNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARAHANVMNATGLPAGSNGSAVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAITSGVSKFALLSLHDRKERHHEKDRKRNHSMGHISSKSSDKLNLVNKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPGKVSKFQP", "length": 567 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAF8-1", "protein_name": "Uncharacterized protein C4orf51 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVGQPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLAYRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK", "length": 208 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPV9-1", "protein_name": "Beta-defensin 5", "gene_name": "Defb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKIHYLLFAFLLVLLSPLAGVFSKTINNPVSCCMIGGICRYLCKGNILQNGSCGVTSLNCCKRK", "length": 64 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPX4-1", "protein_name": "P2Y purinoceptor 12", "gene_name": "P2ry12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVPGANATSANTTSIPGTSTLCSRDYKITQVLFPLLYTVLFFAGLITNSLAMRIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKLGAGHLRTLVCQVTSVTFYFTMYISISFLGLITIDRYLKTTRPFKTSSPSNLLGAKILSVAIWAFMFLLSLPNMILTNRRPKDKDITKCSFLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYSLITKELYRSYVRTRGSAKAPKKRVNIKVFIIIAVFFICFVPFHFARIPYTLSQTRAVFDCNAENTLFYVKESTLWLTSLNACLDPFIYFFLCKSFRNSLMSMLRCSTSGANKKKGQEGGDPSEETPM", "length": 343 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ER80-1", "protein_name": "Receptor-transporting protein 4", "gene_name": "Rtp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFPDDFSTWEQTFQELMQEEKPGAKWSLHLDKNIVPDGAALGWRQHQQTVLGRFQCSRCCRSWTSAQVMILCHMYPDTLKSQGQARMRIFGQKCQKCFGCQFETPKFSTEIIKRILNNLVNYILQRYYGHRKIALTSNASLGEKVTLDGPHDTRNCEACSLNSHGRCALAHKVKPPRSPSPLPKSSSPSKSCPPPPQTRNTDFGNKTFQDFGNRTFQGCREPPQREIEPPLFLFLSIAAFALFSLFTR", "length": 249 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FFP9-1", "protein_name": "Serine/threonine-protein kinase SRK2H", "gene_name": "SRK2H", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDKYEVVKDLGAGNFGVARLLRHKETKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEAEARYFFQQLICGVDYCHSLQICHRDLKLENTLLDGSPAPLLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKHADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIQRIMAVQYKIPDYVHISQECRHLLSRIFVTNSAKRITLKEIKKHPWYLKNLPKELTEPAQAAYYKRETPSFSLQSVEDIMKIVGEARNPAPSSNAVKGFDDDEEDVEDEVEEEEEEEEEEEEEEEEEEDEYEKHVKEAHSCQEPPKA", "length": 360 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLZ3-1", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN12", "gene_name": "KIN12", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGSSEKTTNKLVSILPNYRIGKTLGHGSFAKVKLALHVATGHKVAIKILNRSKIKNMGIEIKVQREIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDYIVEKGKLQEDEARHLFQQIISGVEYCHRNMIVHRDLKPENVLLDSQCNIKIVDFGLSNVMHDGHFLKTSCGSPNYAAPEVISGKPYGPDVDIWSCGVILYALLCGTLPFDDENIPNVFEKIKRGMYTLPNHLSHFARDLIPRMLMVDPTMRISITEIRQHPWFNNHLPLYLSIPPLDTIDQAKKIEEEIIQNVVNIGFDRNHVVDSLANRIQNEATVAYHLILDNRNQNSVPNDPFQSKFKEISDGIFNSTLPVQNITSHVGHSFSALYGLKSNVKDDKTWTLGLQSQGSPYDIMTEIFKALQNLKICWKKIGLYNIKCRWVRSFAYYKNHTIEDECAIILPTVIKFEIQLYKVREGKYLLDILRIDGPQFIFFDLCVAFLRELGVL", "length": 494 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVV4-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 55", "gene_name": "RH55", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDREVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDSNKASRKRKLTGRQRQTIQTAQDEEEMNLRL", "length": 465 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JI02-1", "protein_name": "Secretoglobin family 2B member 20", "gene_name": "Scgb2b20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACLPFFEGYASVLSGSRVWLYQELQAFNATAEEKVALEKIQDCFSEERIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJQ7-1", "protein_name": "X-linked lymphocyte-regulated 4B", "gene_name": "Xlr4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLV9-1", "protein_name": "Prolactin-2C5", "gene_name": "Prl2c5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPSLIQPCSWILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFTEFEKHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNVPDIIISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDIYLNILKCYMLKIDNC", "length": 222 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LJY9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 18", "gene_name": "CYP705A18", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATLISVDFQHCFMYIILLCLFSLLCYSLFFRKPKGTRVGCDLPPSPPSLPIIGHLHHLLSSLTHKSLQKLSSKYGPFLHLRIFSVPIILVSSASVAYEIFKAHDVNVSSRGAAAIDESLLFGSSSFIYAPYGDYWKFMKKIFATKLLRPQVLENSRGVRAEELKRFYRRILDKARKNENIEISKESAMLMNNILCRMSMGRSFSEENGEAERVRGLVGESYALVKKIFFAATLRRLLEKLRIPLFRKEIMGVSDRFDELLERIIVEHKDKLEKEHQVMDMMDVLLAAYRDKNAEYKITRNHIKSFFVDLFVGGTDTSVQTTQWTMAEIINNPNILQTLRKEIDSVVGKSRLIHETDIPNLPYLQAVVKEGLRLHPPGPLLIRTFQERCEMKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLSYSRSGQEDEKEQTLKYLSFGGGRRGCPGVNLGYIFVGTAIGMMVQCFDWKIEGDKVNMEETYGGMNLTMVNPLKCTPVPRTQPFSFTSNLEILSS", "length": 524 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY1-1", "protein_name": "SKP1-like protein 8", "gene_name": "ASK8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSTKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE", "length": 152 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTG5-1", "protein_name": "Callose synthase 4", "gene_name": "CALS4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNQPNRGQILQTVFSHFFPVASPDSELVPSSLHEDITPILRVAKDVEDTNPRSLFLQDLDIKSVDDSINILSGHSHALDKANELDPTSSGRDVRQFKNTILQWLEKNNESTLKARQKSSDAHEMQSFYQQYGDEGINDLLNAGAGSSSSQRTKIYQTAVVLYDVLDAVHRKANIKVAAKILESHAEVEAKNKIYVPYNILPLDPDSKNHAMMRDPKIVAVLKAIRYTSDLTWQIGHKINDDEDVLDWLKTMFRFQKDNVSNQREHLILLLANVQMRQTQRQPNLLDDRALDTVMEKLLGNYNKWCNHVGLESSLRFPKDKQQKVVQQRKLLYTGLYLLIWGEAANLRFMPECLCYIYHHMAFELFEMLESKGSKKKYKPKNPTYSGKDEDFLTKVVTPVYKTIAEEAKKSGEGKHSEWRNYDDLNEYFWSKQYLDKLGWPMKANADFFCKTSQQLGLNKSEKKPDLGDGCVGKVNFVEIRTFWHLFRSFDRMWSFYILSLQAMIIIAWNETSESGGAVFHKVLSVFITAAKLNLFQAFLDIALSWKARHSMSTHVRQRYIFKAVAAAVWVLLMPLTYAYSHTSIFIVAILIYLSPNMLPEMLLLIPSIRRTLEKSDFRPVKLIMWWSQPELYIGRGMHESAWSIYKYMMFWIVLLTSKLAFSYYVEQIKPLMGPTKEIMSVPMPGYWLPEFFPHVKNNRGVVITLWSPVILVYFMDTQIWYAIVSTLVGGLYGAFRHIGEIQTLGMLRSRFQSLPGAFNACLIPNENTKEKGIKLAFSRKCHKIPNTNGKEAKQFSQMWNTIINSFREEDLISNRELELLLMSCWAYPDLDFIRWPIFLLASKIPIAVDIAKKRNGKHRELKNILAEDNCMSCAVRECYASIKKLLNTLVTGNSDLMLITTVFTIIDTHIEKDTLLTELNLSVLPDLHGHFVKLTEYVLQNKDKDKIQIVNVLLKILEMVTKDILKEEIKRLHLLLTVKESAMDVPSNLEARRRLTFFSNSLFMEMPGAPKIQNMLSFSALTPYYSEDVLFSTFDLEKENDGVSILFYLQKIFPDEWKNFLERVKCGTEEELDAIDYLKEEIRLWASYRGQTLTKTVRGMMYYQKALELQAFFDLANERELMKGYKSAEASSSGSSLWAECQALADIKFTYVVACQQYSIHKRSGDQRAKDILTLMTTYPSLRVAYIDEVEQTHIYSKGTSENFYYSALVKAAPQTYSTDSSDSGHMLDQVIYQIKLPGPPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRNLLQEFLEKNGGVRYPTILGLREHIFTRSVSCLAWFMSNQEHSFVTIGQRVLANPLKVRFHYGHPDVFDRVFHLTRGGVSKASKVINLSEDIFAGFNSTLREGTVSHHEYIQVGKGRDVGLNQISMFEAKIANGSGEQTLSRDLYRLGHQFDFFRMLSCYFTTVGFYFCSMLTVLTVYVFLYGRLYLVLSGVEKELGNKPMMMEIILASQSFVQIVFLMAMPMIMEIGLERGFYDALFDFVLMQLQLASVFFTFQLGTKFHYYCKTLLHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKATELGILLLVYHIFGPTYIGLFTISIWFMVGTWLFAPFLFNPSGFEWHEIVEDWADWKKWIEYDNGGIGVPPEKSWESWWEKDIEHLQHSGKWGIVVEIFFALRFFIFQYGLVYQLSAFKNKYSSLWVFGASWLLILILLLTVTVLDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKHRSSKNKD", "length": 1871 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU95-1", "protein_name": "Pyruvate kinase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEMLLGGQATNGALRSKTKIVCTLGPASRSVEMIEKLLKAGMNVARFNFSHGSHSYHQETLDNLRTAMDNTGILCAVMLDTKSPVIRTGFLKEGKPIQLKQGQEITISIDYKIQGDSNTISMSYKKLAEDLKPGDVILCSDGTISLNVLSCDKYLGLVRCRCENSALLGERKNVNLPGIVVDLPTLTEKDKEDIMQWGVPNKIDIIALSFVRKGSDLIQVRKLLGEHSKSIMLMSKVENQEGVMNFDKILENSDAFMVARGDLGMEIPIEKMFLAQKTMINKANAHGKPVVTATQMLESMTVSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDILHKKTLGMVSLPLSPIESLAASAVSTARSVFASAIVVLTRGGYTAELVAKYRPSVPILSVIMPEIAECSDSVAHVARRGLIYRGIIPVVGCSARDSTEEMIRLAIGFAKTKGICKTGDSIVALHKIDGSSIVRIVSVE", "length": 497 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX08-1", "protein_name": "Annexin D6", "gene_name": "ANN6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASLKIPANIPLPEEDSEQLHKAFKGWGTNEGMIISILAHRNATQRSFIRAVYAANYNKDLLKELDGELSGDFERVVMLWTLDPTERDAYLANESTKLFTKNIWVLVEIACTRPSLEFFKTKQAYHVRYKTSLEEDVAYHTSGNIRKLLVPLVSTFRYDGNADEVNVKLARSEAKTLHKKITEKAYTDEDLIRILTTRSKAQINATLNHFKDKFGSSINKFLKEDSNDDYVQLLKTAIKCLTYPEKYFEKVLRRAINRMGTDEWALTRVVTTRAEVDLERIKEEYLRRNSVPLDRAIANDTSGDYKDMLLALLGHDHA", "length": 318 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXS7-1", "protein_name": "Citrate synthase 1, peroxisomal", "gene_name": "CSY1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEISERARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGNEYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVEELAEKSTYTEVTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSKQVRDKQIVRVLGQAPTIAAAAYLRKAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSGGDVYTAVSGGVGAIYGPLHGGAVEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPRGKVVKKLADEVFSILGRDPLVEVGDALEKAALSDEYFVKRKLYPNVDFYSGLINRAMGIPSSFTAVSRIAGYLSHWRESLDDPDTKIMRPQQVYTGAGIRHYETVRERTKL", "length": 480 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY06-1", "protein_name": "Glycine/proline-rich protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MITCILKISISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRFYCRFDTGFDVRFAAGFAADLTIGFTIGFDSGFATFLDVGLDDGFATGLDISFAGGFVTGFATDFDVGFDTGFTIGFDTGFDVGLPAVFSIGFDTGFAVGFAISFTVGFDAGFPTGFFVSLDVGFVADFVIGFATGIGVGFEVDFATDFDTCFATGFAVSFDVGFAGGFSIGFAADFANGFTVGFDGGFDASFFVGLDVGFVVGFVTSFAAGLDVGFAIDFATGFDTGFAFGLAFGFDVGFAAGFAVGFATGFTVVFDVGFASDFFVGLDVGFLTGFATDFDIGFVVDFDIGFATGFVVGFDDGSIVGLVVGLPASLDDGLAIDFVVGLDIGFVTGLFVGLVDGLTTDLDVGLVDGLDDGLDDGLDVDLVVVGFVVDGLAVDLDVGLGVGLTVGFVDGLDVGFDDGLDADTVDGLDVGLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDGLDVDLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDDGLVVGLFDVFVGTGLSWEIPPPGKLPPDASPLGIGSFGVGPPGASPFIASPSGEGPLSEGLLGIRSFGISPLSIRPLGISPLGISPPNIEPSKADASDADPSNAGPLGISPLSIDPPVAGASDEGPLGKLPPDLSPPGKGSSGEGPLVESPPSEGPLGVDPLGAGSLGISPLGKSPLRIRPLGISPFGKIPSNIDPSSALASDGGPPDEPASAEGSPDVGIFGISPPIIDPPVEGASDGDPPEKLSLDISPLGKGPSGVSLLGAGPPGVGPVIASPPGEGPRDAGPLGAGSLGISPLNIRRLGISPSGISPPNIDLPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGESESDGDPAGKLPLDISPLSKGPSCVSPLGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLSISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGEDASDGDPPGKFPLDISPLGKCPSGVSPLGVGPPGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLGISPFGISPPNIDLPVAGTSIGGPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGKLPLDISPVGKGPSGVSPPGAGPPGDGPVIASPPGESPLDAGPLGAGSLGISPFGISPPNIDWPVAGTSFGGPPGEGASNGGPLVVGPFDMPVVGASDGDALEKLPLDISLPGKGPSDVGPPGAGLPGAAPPGVDLSNVGASDRGASGEGASDGCPPDVGPFDICLLSIDPPVVGASDGGPPDEGASNGGPPDTDSFGGDPLCASPLGIDPPIVDASDGDPFGAGSPDEDPSNENASGEGASGESPPCSDVSCKGPSSAGASIGCSLDNGASTPSSPDTFLSNVFPSDKSSPDAFSPDVAALVTLPSGKDPFDISPPIVALLDVSPLGKTSSDAYSSGISPGIFEKSFPLVKLQTIEYM", "length": 1504 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S0-1", "protein_name": "Probable mannose-1-phosphate guanylyltransferase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQLLVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDIVM", "length": 364 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NR96-1", "protein_name": "Toll-like receptor 9", "gene_name": "TLR9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFCRSALHPLSLLVQAIMLAMTLALGTLPAFLPCELQPHGLVNCNWLFLKSVPHFSMAAPRGNVTSLSLSSNRIHHLHDSDFAHLPSLRHLNLKWNCPPVGLSPMHFPCHMTIEPSTFLAVPTLEELNLSYNNIMTVPALPKSLISLSLSHTNILMLDSASLAGLHALRFLFMDGNCYYKNPCRQALEVAPGALLGLGNLTHLSLKYNNLTVVPRNLPSSLEYLLLSYNRIVKLAPEDLANLTALRVLDVGGNCRRCDHAPNPCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSWLNASWFRGLGNLRVLDLSENFLYKCITKTKAFQGLTQLRKLNLSFNYQKRVSFAHLSLAPSFGSLVALKELDMHGIFFRSLDETTLRPLARLPMLQTLRLQMNFINQAQLGIFRAFPGLRYVDLSDNRISGASELTATMGEADGGEKVWLQPGDLAPAPVDTPSSEDFRPNCSTLNFTLDLSRNNLVTVQPEMFAQLSHLQCLRLSHNCISQAVNGSQFLPLTGLQVLDLSHNKLDLYHEHSFTELPRLEALDLSYNSQPFGMQGVGHNFSFVAHLRTLRHLSLAHNNIHSQVSQQLCSTSLRALDFSGNALGHMWAEGDLYLHFFQGLSGLIWLDLSQNRLHTLLPQTLRNLPKSLQVLRLRDNYLAFFKWWSLHFLPKLEVLDLAGNQLKALTNGSLPAGTRLRRLDVSCNSISFVAPGFFSKAKELRELNLSANALKTVDHSWFGPLASALQILDVSANPLHCACGAAFMDFLLEVQAAVPGLPSRVKCGSPGQLQGLSIFAQDLRLCLDEALSWDCFALSLLAVALGLGVPMLHHLCGWDLWYCFHLCLAWLPWRGRQSGRDEDALPYDAFVVFDKTQSAVADWVYNELRGQLEECRGRWALRLCLEERDWLPGKTLFENLWASVYGSRKTLFVLAHTDRVSGLLRASFLLAQQRLLEDRKDVVVLVILSPDGRRSRYVRLRQRLCRQSVLLWPHQPSGQRSFWAQLGMALTRDNHHFYNRNFCQGPTAE", "length": 1032 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QUG3-1", "protein_name": "Prion-like protein doppel", "gene_name": "Prnd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNRLGTWWVAILCMLLASHLSTVKARGIKHRFKWNRKVLPSSGGQITEARVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKLHQRVLWRLIKEICSAKHCDFWLERGAALRVAVDQPAMVCLLGFVWFIVK", "length": 179 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SAC9-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAGAASALFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQFTEARILSEFIKTDAYRMEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM", "length": 428 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCN2-1", "protein_name": "Cytochrome P450 71B31", "gene_name": "CYP71B31", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMFLGLLFLFPLFFILFKNLLPPRKKLPPGPTGLPLIGNLHQLGRLLHSSLHKLSLEHGPVMLVRWGVVPMAVFSSNEAAKEVLKTHDLETCNRPKLVANGLFTHGYKDIGFTQYGEEWREMKKFVGLELFSPKKHKSFRYIREEEGDLLVKKISNYAQTQTLVDLRKSLFSYTASIIFREAFGQNFRECDYINMDKLEELVQETETNVCSLAFTDFFPRGLGWLVDRISGQHSRMNIAFSKLTTFFEDVIDELLKTKQLDDHSDLVTAMLDVINRPRKFGSLKITYDHLIAMMSDVVLAGVNAGTVTMIWTMTELTRHPRVMKKLQEEIRATLGPNKERITEEDLEKVEYLNLVIKESFRLHPPAPLLLPRETMSDIEIQGYHIPKNAHVKINTYAIGRDPKRWTNPEEFNPERFLNTSINYKGQHYELLPFGAGRRNCPGMTLGITILELGLLNILYYFDWSLPSGMTIKDIDMEEDGALNIAKKVPLQLVPTLP", "length": 498 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ39-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 6", "gene_name": "CYP705A6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAILSVDFQNCFIFIVLCLFSLFCYSLFFKKPKHPRGCDLPPSPPSLPIIGHLHLLFSPLTHKSLQKLSSKYGHLLHLRIFNVPVILVSSASVAYEIFRAHDVNVSSRGVAAIDESLLFGSSGIITAPYGDYWKFMKKLIATKLLRPQSLESSRGIRGEELTRFYNSLLDKARMTESVEISTEAMKLVNNTLCRMSMGRSFSEENGEAEKIRGLVGESYALTKKMFLASLLRKPLKKLRISLFEKEIMGVSDRLDELLERILVEHEEKLHEEHQGTDMMDVLLAASGDENAEYNITRNHIKSFFVEIFIGATDTSVQTTQWTMAEILNHPNVLERLRKDIDSVVGKTRLIHETDLPNLPYLQAVVKEGLRLHPPGPLLVRTFQERCKIKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLRAPPMGGSLDKFIEFS", "length": 442 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMT4-1", "protein_name": "Large ribosomal subunit protein eL13y", "gene_name": "RPL13C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK", "length": 206 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIIRDIMEDPENEGPHNMRSDFEPLLSVLRLRDYETGDIIEFDSTEASEEALSDITEFGSTEASEAHFEEPYSARIKKVEKEINELAEKICNLGIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVKGYQKFSATPKYMAYYI", "length": 464 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM4-1", "protein_name": "Serine hydroxymethyltransferase 5", "gene_name": "SHM5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISESRND", "length": 470 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWH4-1", "protein_name": "Syntaxin-42", "gene_name": "SYP42", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSAEREREIQQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQREGAMVKCATILLVLCLIMIVLLILKNILF", "length": 323 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYN6-1", "protein_name": "SOUL heme-binding family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEAALSIFKLSFLLTLLSGGSDLIDSLPPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIWFPFEMEDEETVSIVTQ", "length": 225 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZB4-1", "protein_name": "Putative DEAD-box ATP-dependent RNA helicase 43", "gene_name": "RH43", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVDDGYVEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV", "length": 542 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0E0-1", "protein_name": "Putative ATPase, plasma membrane-like", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATGDSLEDIKIEIDDDLEKIPIEEVFKKLRCSREGLSGAEGKERLKIFGPNKLENKKKEHITLRFFALMFKPLSWVIQAAAIMAMLFANGDGRQLFLGIVCLLIVNTIICYLKEDDAANVVAMARAGLSPKTKVLRDGKWSEQEASILVPGDIVSIKPGDIIPCDARLLEGDTLKVDQSALTGEFGPITKGPGEEVFSGTTCKQGEMEAVVIATGVHTFSGTTAHLVDNRTNKVGHFRKVVTEIENLCVISIAIGISIEVIVMYWIQRRNFSDVINNLLVLVIGGIPLAMPTVLYVIMVTGSLRLYRTGTITQRITAIEDMAAIDVLCSDKTGTLTLNKLSVDKNLIKVYSKDVEKEQVLLLAARASRIENRDGIDAAMVGSLADPKEARAGIREVHFNLVDKRTALTYIDGNGDWHRVSKGTPEQILDLCNARDDLRKSVHSAIRNYAERGLKSFAISWFRNTNCNTVFFFPYQLCSEHKYHIVNKLQERHICGLIGDGVDDVPSLKKADVGIAVANATEAARAASDIVLTEPGLSVIIDAVLASRAILQQMKHYTIYAVSITIRVVFGFMFIALIWKFDFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSLFDNMVHLVLNSYAKLSNGIYNHTQADHTYSLLEVSTPPSQDLRGVGWV", "length": 813 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0H7-1", "protein_name": "Histone H2A.8", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVCNTNILKDVSTKISAFENVRMIMVEGEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH", "length": 118 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VXF6-1", "protein_name": "Calnexin 14D", "gene_name": "Cnx14D", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAWKMLFAILLLLSAAKTGYLAPESENSVEDVQIEPGAIYGDEKFAYKSPVIDAEKFYFADHFDDVEASRKRWVLSQAKKNDIADEIAKYDGIWNWESPQRIFWANDLGLVLKSKAKHAAIAAPFRQPFDFKSNKPLVVQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNLKMHFIFRHVNPLNGNITEKHCKKPNARLGVPFTDKLPHLYQLVVRPDNSFEIRLDHKIIKEGSLLTDFVPPVNPPAEIDDPNDHKPESWDERKKIPDPNAHKPEDWDEDAPPHLPDTDAVMPNGWLEDEPDMIFDPTAIEPEDWNSEIDGEWEAPLVENPVCKKAPGCGKWKAPLIPNPNYKGKWSAPMIENPNNQGKWAPRKIANPDFFEDLKPFQMTPINAVGLELWSMSSDILFDNLIITDDVELARDFAANSFDIKRLYIDRESFGNKVVELARANRAIWGIVIVAIAVPVAITIFCKFGLGPSRVAAAKKAAAAAAKKTDDPQPDDDLGAEEEEKLEKGKKEEEKKEEEEEEEKEENKEEKKEEEKDDEKEMKDCEEEEDDEEKDDEEKTDERAAGDTNKESTPLSASPKKNQKSYLDNNEDEEDTLKNKEPTPKKRKRKALKE", "length": 639 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W240-1", "protein_name": "K Homology domain-containing protein", "gene_name": "cg3927", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALLIDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMNPKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYMEEVEYDYDEHLMFCSPVVRL", "length": 270 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W4G6-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG2861", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDYEIIEFVRRHISHIDISAETRMRYPDPISNNNFDWNSIGLGEQEDAIGQDQQSQALNENANNVSPDVPPSTIAEPTLEPSTIEGNQGQNPRIISSMPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNTESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESDTNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCDVETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKIRKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQNFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIGKIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGGTNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQSSESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPNGEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIPNSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQTAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPKAPRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAPRVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLETPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSNMPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMKSDGRIKQGRVSKPSLRFSPSSSSLRPVVRSLSSSSSSSSSWSSCTTCSTCSSCSTCSSSSDSSQSSRSRNRKRRSPKVPIPHKLFESNGEINFQLGQPTRLESPSPPPPVPMQACGTFEEHLTDLTLVRVHAISPLRSPTYDFDFDLPEPMLSEESSSSSSESNDESNVNCQMAPNSQNVSMHFLKVMVFYNCYVLFQQLEKKHQSLFEESSSSSSSESNDETNVNCQMTPNSQNQKKLQSAPIREPSPDQPPEAASRSSNGGTIGPCNLKAFRRDFMISNAENTGFTNPSELNLKKCATKVCTPMERNSGSQLPIQNRFILPNSNKEEGKMNVEPVMPKHKPSRIPIRTKTPIALNLMKEPEDNARKPKNILKPFFSNADVNPCSSTDYEPNFKPCESPLPAKQNDFKLINKDKKSWVSHYQEQESQELKENSFFYAKFNLPNIPKKSFKDSKANAERRCTKTFEDVRKEAQQSRYTKAINKRQNKKAMLESALGNAITEDPTVNCNLADNPNDQVEMPRNPDIVEPTVKPVKFKAFVSASIKPKSSKKRKLMNSASNSKLFKFKIFESEVNKDENEEEDVIPDNLIIPVKRKQNISELLDMQPSTSKAAATITSQPKIAQLKRMPSKLLNEKMKSYAKKRSNDDENKDTKNTGMHMHRYKIPKLSANKPQNTSTTQSPTRGFSRLPGMYQEPNFQNAQHPFSTRGYYPYQRAYPLHRPTSQYHMNQPQPLRLHHSMYVDAEPSFESVFPAPRYQPYNINPSMRHHYSYPGEPSPSTYPMGGIPFQNNNTLYPPMRNDLCYPRGRLNYPVRNLPPMNSQGTYPPNYPQNFLPNYPPSRQFLLSMQRLADINKQIASGSIESVGGFIQMAYAGRKYRTLKDLRERTMLSKDSLRKIFKCMCKIKRPKWRISKFYLYAYWCEISGIPQSSEFGKPLELNAAYRKVISSYAENKFLRMESLMEKTGFGKSKLKRVLKMIGRKRSTKWRLLNYRKPLIHLHRSQDM", "length": 1893 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNGTEGSNFYIPMSNRTGLVRSPYDYTQYYLAEPWKFKALAFYMFLLIIFGFPINVLTLVVTAQHKKLRQPLNYILVNLAFAGTIMVIFGFTVSFYCSLVGYMALGPLGCVMEGFFATLGGQVALWSLVVLAIERYIVVCKPMGSFKFSANHAMAGIAFTWFMACSCAVPPLFGWSRYLPEGMQTSCGPDYYTLNPEYNNESYVMYMFSCHFCIPVTTIFFTYGSLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFLFAWVPYASFAAWIFFNRGAAFSAQAMAVPAFFSKTSAVFNPIIYVLLNKQFRSCMLNTLFCGKSPLGDDESSSVSTSKTEVSSVSPA", "length": 349 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9XK79-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4L", "gene_name": "nad4L", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLIDLILIAIYVIGISGLIFNKNNIINILIISELNLGTLGMLFVLASVELNDILGELSGLYILTFTAAESAIGLAIVVILYSKTGIINIRHLNKLKG", "length": 98 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Y2B0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "CNPY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1X0-1", "protein_name": "C-C motif chemokine 27", "gene_name": "Ccl27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEGLSPASSLPLLLLLLSPAPEAALPLPSSTSCCTQLYRQPLPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGTVPSLNLVLQKKMYSHPQQQN", "length": 120 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "S4R2L0-1", "protein_name": "Secretoglobin, family 2B, member 12", "gene_name": "Scgb2b12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGILLLLGLLITGELSFQTTEACVPFFEVYASVLSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLDNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "W4VSP8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNLQSKHQQRFFNKDIFFSL", "length": 311 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WF74-1", "protein_name": "Uncharacterized protein LOC100334758 precursor", "gene_name": "si:dkey-52p2.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARTSENMIGKVLFVLFLLSGPTSVLTDFHSLQILGTYIKGDTLFPQISFTFMLDDLTVGLYITERDEFIPRDNTTNEDETVSDMLDKIKNELQPLLKGTLIFQNSTESPQLFQIAWHCELLDNNKTGQMILKIAFSGSTTDEVSFYGNNFTCQCQNNMATVPLEYFQMQFKSIYYPVCMTTLGGYLVKRQVQVNRKVQPKVRLIKKVHPKSGGFRLSCLASEFYPYFINLTLLRDGQPVSDHEVTGGDLLPNGDGTYQMRKSLEIRADEREKHKYTCSAKHLDKNLDVDFEFDPSYPVKIVIPVVVLLSLVLVLTAVLIHKCMNKQAASPPEQQEPIEMGGRLRK", "length": 346 }, "evidence": [ { "id": "F1S7N4", "url": "https://omabrowser.org/oma/group/F1S7N4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1S7N4", "url": "https://www.uniprot.org/uniprotkb/F1S7N4" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1S7N4", "url": "https://www.uniprot.org/uniprotkb/F1S7N4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S7N4", "url": "https://www.uniprot.org/uniprotkb/F1S7N4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S7N4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 312, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S7N4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S7N4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S7N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7N4" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 287, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S7P5-1", "uniprot_ac": "F1S7P5", "uniprot_id": "F1S7P5_PIG", "mass": { "chemical_mass": 62614.0, "monoisotopic_mass": 62614.0 }, "refseq": { "ac": "XP_003123103", "name": "amyloid beta A4 precursor protein-binding family A member 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123103" }, "gene_names": [ { "name": "APBA3", "type": "recommended", "evidence": [ { "id": "F1S7P5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7P5" } ] }, { "name": "APBA3", "type": "synonym", "evidence": [ { "id": "XP_003123103", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123103" } ] } ], "protein_names": [ { "name": "Amyloid-beta A4 precursor protein-binding family A member 3", "type": "recommended", "evidence": [ { "id": "F1S7P5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7P5/entry#names_and_taxonomy" } ] }, { "name": "Adapter protein X11gamma", "type": "synonym", "evidence": [ { "id": "F1S7P5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7P5/entry#names_and_taxonomy" } ] }, { "name": "Neuron-specific X11L2 protein", "type": "synonym", "evidence": [ { "id": "F1S7P5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7P5/entry#names_and_taxonomy" } ] }, { "name": "Neuronal Munc18-1-interacting protein 3", "type": "synonym", "evidence": [ { "id": "F1S7P5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7P5/entry#names_and_taxonomy" } ] }, { "name": "amyloid beta A4 precursor protein-binding family A member 3", "type": "synonym", "evidence": [ { "id": "XP_003123103", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123103" } ] } ], "function": [ { "annotation": "May modulate processing of the amyloid-beta precursor protein (APP) and hence formation of APP-beta. May enhance the activity of HIF1A in macrophages by inhibiting the activity of HIF1AN.", "evidence": [ { "database": "UniProtKB", "id": "F1S7P5", "url": "https://www.uniprot.org/uniprotkb/F1S7P5#function" }, { "database": "UniProtKB", "id": "ARBA00058713", "url": "https://www.uniprot.org/uniprotkb/ARBA00058713#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S7P5", "url": "https://www.uniprot.org/uniprotkb/F1S7P5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "APBA3", "url": "https://www.uniprot.org/uniprotkb/F1S7P5", "locus": { "chromosome": "2", "start_pos": 74938003, "end_pos": 74930109, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013492", "url": "https://www.ensembl.org/id/ENSSSCG00000013492" } ] } } ], "crossref": [ { "id": "F1S7P5", "url": "https://alphafold.ebi.ac.uk/entry/F1S7P5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013492", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013492", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01208", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01208", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06720", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06720", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06793", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06793", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521713", "url": "https://www.ncbi.nlm.nih.gov/gene/100521713", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051230", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051230", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521713", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521713", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HCEECPP", "url": "https://omabrowser.org/oma/group/HCEECPP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S7P5", "url": "https://www.orthodb.org/?gene=F1S7P5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12345", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12345", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12345:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12345:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00640", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00640", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003123103", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123103", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S7P5", "url": "https://www.uniprot.org/uniprotkb/F1S7P5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7P5-1", "url": "https://www.uniprot.org/uniprotkb/F1S7P5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEFLTASQPPPGSPASQPPPGSPAMELEEPKDTLLPSQDLSSDCQWDPAPGGHSSLSQMELDGLNIQDLVQQFEALPGDLVGLSPDGAPCPLHIATGHGLASQDITDAHGLLSAEAGRDDLLSLLQQDECPPSQLCPQEPLDPAPRLLQPPEDPEEDAGPQEWAEGASAERGGSGSSSSSPEPWLETVPLVAPEEPPANVKSPETLASYPALQEVSGPCDHEDLLDGVMFGAKYLGSTQLVSERNPPPSTRMAQAQEAMDRVKAPDGETQPMTEVDLFVSTKRVKVLMANSQEAMMDHALQTISYIADIGSVLVLMARRRVARRPAPQAHSRRLYKMICHVFHSEDAQLIAQAIGQAFAVAYSQFLRESGIDPSQVGTQQSQGATGPGHLHNGDLDHFSNSENCREVCIEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRITAINGTSLVGLPLAACQAAVREVKSQTLVTLSIVHCPPVTTAIIRRPHVREQLGFCVEDGIICSLLRGGIAERGGVRVGHRIIEINGHSVVATPHDRIIELLTEAHIEVHIKTMPAATYRLLTGQEQPVYL", "length": 587, "header": "tr|F1S7P5-1|F1S7P5_PIG Isoform 1 of Amyloid-beta A4 precursor protein-binding family A member 3 OS=Sus scrofa OX=9823 GN=APBA3 PE=4 SV=1 CANONICAL=F1S7P5-1" }, "isoforms": [ { "isoform_ac": "F1S7P5-1", "url": "https://www.uniprot.org/uniprotkb/F1S7P5/entry#F1S7P5-1", "sequence": { "sequence": "MEFLTASQPPPGSPASQPPPGSPAMELEEPKDTLLPSQDLSSDCQWDPAPGGHSSLSQMELDGLNIQDLVQQFEALPGDLVGLSPDGAPCPLHIATGHGLASQDITDAHGLLSAEAGRDDLLSLLQQDECPPSQLCPQEPLDPAPRLLQPPEDPEEDAGPQEWAEGASAERGGSGSSSSSPEPWLETVPLVAPEEPPANVKSPETLASYPALQEVSGPCDHEDLLDGVMFGAKYLGSTQLVSERNPPPSTRMAQAQEAMDRVKAPDGETQPMTEVDLFVSTKRVKVLMANSQEAMMDHALQTISYIADIGSVLVLMARRRVARRPAPQAHSRRLYKMICHVFHSEDAQLIAQAIGQAFAVAYSQFLRESGIDPSQVGTQQSQGATGPGHLHNGDLDHFSNSENCREVCIEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRITAINGTSLVGLPLAACQAAVREVKSQTLVTLSIVHCPPVTTAIIRRPHVREQLGFCVEDGIICSLLRGGIAERGGVRVGHRIIEINGHSVVATPHDRIIELLTEAHIEVHIKTMPAATYRLLTGQEQPVYL", "length": 587, "header": "tr|F1S7P5-1|F1S7P5_PIG Isoform 1 of Amyloid-beta A4 precursor protein-binding family A member 3 OS=Sus scrofa OX=9823 GN=APBA3 PE=4 SV=1 CANONICAL=F1S7P5-1" }, "locus": { "chromosome": "2", "start_pos": 74937912, "end_pos": 74930869, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014738.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014738.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014340.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014340.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S7P5", "url": "https://www.uniprot.org/uniprotkb/F1S7P5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521713", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521713", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7K959-1", "protein_name": "Amyloid-beta A4 precursor protein-binding family A member 3", "gene_name": "Apba3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEFLSAPQHPPGPPAMDLEEPKSPELPSDDQPTSTQWASGPGGPVTPNEMELDASGVQELIQQLEALPGDLGGPFPEGEPCPLHIATGQGLTAQESVDAGGLLSAEAGGGDFLGLLRFESSSPAQPGPVDPPQTAPRLLQPPEDPSGDRGLPGWMEGMSAAEPADSRSSSSSPEPWLETAPLVTQQEPPASAQSPETLASCPAVSEGSQSPWDTYDGCAWLHPLLSLTVPGPCGHEELVDGVVFAAKYLGSTQLLSERSPPPSMRMAQAQEAMDRVKAPEGETQPMVEVDIFISTKRVKVLAADSQDALMDHALQTISYIADIGPVLIVMARRRLARRTAPQDRKQRLYKMLCHVFHSEDAQLVAQAIGQAFSIAYSQFLQENGIDPSQVGTRPSDASHPHNGDLDHFCNSQNCREVCIQKRPGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRVTAINGTSLVGLPLDACQAAVREVRRHSSVTLSIIHCPPVTTAIIRRPHVHEQLGFCVEDGIICSLLRGGAAERGGVRVGHRIIEVNGQSVVAMPHARIIQLLTEAREIHIKTMPAATYRLLTGQEQPVYL", "length": 596 }, "evidence": [ { "id": "F1S7P5", "url": "https://omabrowser.org/oma/group/F1S7P5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O70248-1", "protein_name": "Amyloid-beta A4 precursor protein-binding family A member 3", "gene_name": "Apba3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEFLPEPQHPPGPPTMDLEEPKGPEVPSEDHPSNTQWALGPRGPDTLSEMELDTSSVRALVQQLEALPSDLGGQFPDGAPCPLHIATGQGLATQENLDAGGLLSAEAGGDNLLGLLRCEASLPAQSVPPDPAQAAPRLLQPPEDPGGDPGWMEGTEPADNRSSSSSPELWLETAPLVTHRDPPVGTQSQETLASCPAVSEVPGPCGQEELMDGVLFGAKYLGSTQLLSERNPPPSTRMGQAQEAMDRVKAPEGETQPMTEVDIFISTKRVKVLAADSQDALMDHALQTISYIADIGPVLVLMARRRLAKRTTSQDRQRQLYKMLCHVFHSEDAQLIAQAIGQAFSIAYSQFLQENRIDPSQVGMQPSASASHPHNGDLDHFCNSQNCREVCIQKRPGEGLGVALVESGWGSLLPTAVIANLLHGGPAERCGALSIGDRVTAINGTSLVGLSLAACQAAVREVRRHSSVTLSIIHCPPVTTAVIHRPHVREQLGFCVENGIICSLLRGSAAERGGVRVGHRIIEVNGQSVVAMPHARIIQLLTETREIHIKTMPAATYRLLTGQEQPVYL", "length": 569 }, "evidence": [ { "id": "F1S7P5", "url": "https://omabrowser.org/oma/group/F1S7P5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O88888-1", "protein_name": "Amyloid-beta A4 precursor protein-binding family A member 3", "gene_name": "Apba3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEFLPGPQHPPGPPTMDLEEPKGPEVPSENHPSNTQSALGPGGPVTLSEMELDTSSVQELVQQLEALPSDLGGPFPDGAPCPLHIATGQGLATQENPDAGGLLSAEAGGDDLLGLLRDEASSPAQSVPQDPAQTAPRLLQPPEDPDGDPGWMEGASAEPADSRSSSSSPEPWLETAPLVTQQEPPVGTQSRETLASCPAVTEVPGPCGPEELMDGVIFGAKYLGSTQLLSERSPAPSTRMGQAQEAMDRVKAPEGETQPMVEVDIFISTKRVKVLAADSQDALMDHALQTISYIADIGPVLVLMARRRLARRTTPQDRQRRLYKMLCHVFHSEDAQLIAQAIGQAFSIAYSQFLQENRIDPSQVGTQPSTAASHPHNGDLDHFCNSQNCREVCIQKRPGEGLGVALVESGWGSLLPTAVIANLLHGGPAERCGALSIGDRVTAINGTSLVGLSLAACQAAVREVRRLSSVTLSIIHCPPVTTAVIRRPHVREQLGFCVEDGIICSLLRGGAAERGGVRVGHRIIEVNGQSVVAMPHARIIQLLTETREIHIKTMPAATYRLLTGQEQPVYL", "length": 571 }, "evidence": [ { "id": "F1S7P5", "url": "https://omabrowser.org/oma/group/F1S7P5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O96018-1", "protein_name": "Amyloid-beta A4 precursor protein-binding family A member 3", "gene_name": "APBA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDFPTISRSPSGPPAMDLEGPRDILVPSEDLTPDSQWDPMPGGPGSLSRMELDESSLQELVQQFEALPGDLVGPSPGGAPCPLHIATGHGLASQEIADAHGLLSAEAGRDDLLGLLHCEECPPSQTGPEEPLEPAPRLLQPPEDPDEDSDSPEWVEGASAEQEGSRSSSSSPEPWLETVPLVTPEEPPAGAQSPETLASYPAPQEVPGPCDHEDLLDGVIFGARYLGSTQLVSERNPPTSTRMAQAREAMDRVKAPDGETQPMTEVDLFVSTKRIKVLTADSQEAMMDHALHTISYTADIGCVLVLMARRRLARRPAPQDHGRRLYKMLCHVFYAEDAQLIAQAIGQAFAAAYSQFLRESGIDPSQVGVHPSPGACHLHNGDLDHFSNSDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCPPVTTAIIHRPHAREQLGFCVEDGIICSLLRGGIAERGGIRVGHRIIEINGQSVVATPHARIIELLTEAYGEVHIKTMPAATYRLLTGQEQPVYL", "length": 575 }, "evidence": [ { "id": "F1S7P5", "url": "https://omabrowser.org/oma/group/F1S7P5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "enzyme inhibitor activity", "id": "GO:0004857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004857", "evidence": [ { "database": 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"https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17491", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519240", "url": "https://www.ncbi.nlm.nih.gov/gene/100519240", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039672", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039672", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519240", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519240", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GLYTAWM", "url": "https://omabrowser.org/oma/group/GLYTAWM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S7R4", "url": "https://www.orthodb.org/?gene=F1S7R4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { 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"Protein" ] } ], "sequence": { "sequence": "MGPGPPTAGAGAPPRPLSLVARLSYAVGHFLNDLCASMWFTYLLLYLHSVRAYSSRGAGLLLLLGQVADGLCTPLVGFEVDRAAGRCARFGPRKAWHLVGTICVLLSFPFIFSPCLGCGATTPEWAALLYYGPFIVIFQFGWAATQIAHLSLIPELVTNDHEKVELTALRYAFTVVANITVYGAAWLLLHLQGSPHMESTQDINDQLGVQDVPVFRNLSLLVVGIGAVFSLLFHLGTREGRRRQVEEPDEHGPLLAPATARPLLLWKHWLQEPAFYQVGLLYMSTRLIVNLSQTYMAMYLTYSLNLPKKFIATIPLVMYLSGFFSSFLMKPINKCIGRNMTYFVGLLVILAFAAWVALTNELGVAVYVAAVLLGTGCATILVTSLAMTADLIGPHTHSGAFVYGAMSFSDKVANGLAVMAIQSLHPCSLELCCRACVSFYHWVMVAVTGGVGVAATLCLCSLLIWPIRLQNWDSGAQP", "length": 478, "header": "tr|F1S7R4-1|F1S7R4_PIG Isoform 1 of Major facilitator superfamily domain-containing protein 12 OS=Sus scrofa OX=9823 GN=MFSD12 PE=3 SV=3 CANONICAL=F1S7R4-1" }, "isoforms": [ { "isoform_ac": "F1S7R4-1", "url": "https://www.uniprot.org/uniprotkb/F1S7R4/entry#F1S7R4-1", "sequence": { "sequence": 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"https://www.ensembl.org/id/ENSSSCP00000024255.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 7, "start_aa": "Thr", "end_pos": 7, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr7", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S7R4", "url": "https://www.uniprot.org/uniprotkb/F1S7R4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519240", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519240", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A7I3-1", "protein_name": "Major facilitator superfamily domain containing 12", "gene_name": "MFSD12", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAEPALGAALPLRARLSFAAGHFLNDLCASLWFTYLLLYLHAVLGYSHGLAGGLLLAGQVADGLCTPLLGYEADRSAGCGRYGRRKSWHLAGTTCVLISFPFIFNPCLGCKEGTPQWAAFIYYLPFIVIFQFGWAATQISHLSLIPELVTSDHEKVELTAFRYAFTVMANITVYGLAWLLLNLQVDQPERTEHLGFQDVPVFRNLSLIVVGLGALFSLFFHLGTKEKLYPLGSVPQPKESTPLLQKEPTRSPRSLLVWKDWLLEPSFYQVAVLYMATRLIVNLSQTYIAMYLTNSLLLPKKYIATIPLVMYISGFLSSFLMKPVNKWIGRNLTYFVGILVILAFASWVSLSREMGAEIYGVAVLLGAGSATILVTSLSMTADLIGTNTHSSAFVYGAMSFTDKMANGLAVMLIQNLHPCPTELCCPACVSFYHWVMVLVTGGIAMAATVFLCCIMIWPIRVRFHGPGCSGRLQGDPHGRHVDRLSSLCFCCSWPQSWGCACGGKICPCLVVLLWEHMDVGGQRGLLRLLAAKWRAGGGLPSPSWGPTASAQYQLYL", "length": 556 }, "evidence": [ { "id": "F1S7R4", "url": "https://omabrowser.org/oma/group/F1S7R4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1M4E3-1", "protein_name": "Major facilitator superfamily domain-containing protein 12", "gene_name": "Mfsd12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"" }, { "name": "pigment metabolic process involved in pigmentation", "id": "GO:0043474", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043474", "evidence": [ { "database": "UniProtKB", "id": "F1S7R4", "url": "https://www.uniprot.org/uniprotkb/F1S7R4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S7R4", "url": "https://www.uniprot.org/uniprotkb/F1S7R4" } ], "pmid": "" }, { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "F1S7R4", "url": "https://www.uniprot.org/uniprotkb/F1S7R4" } ], "pmid": "" }, { "name": "late endosome", "id": "GO:0005770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005770", "evidence": [ { "database": "UniProtKB", "id": "F1S7R4", "url": 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"organism": "Gallus gallus", "sequence": { "sequence": "MCPRFPLEFSNLLVDITEILELIGCGLKKKQKLSKENAFKLNNNNNLDACCAVLSQESTKYLYGEGDLSFSDDSAIPGLRNHMTSLNLDLQSQNVYHHGRDGRMNGSRTLAHSVSDGHLQTKQPNNELFQQEPQTAPAQVPQGFNVFGMGNTVSASNPGQHLGFHLGSKGVSNLSQQTPRFNPIMVTLAPNIQPGRNTPTSLHIHGVPPPVLNSPQGNSIYIRPYITAPSGTARQTQQQAGWASQFNPMHPQQVYQPSQPSPWTTLPTSNTTPHTSSQHSTQPNQQGHQTSHVYMPISSPTTPQAPMIHSSGSAQSSAHSQYNIQNISTGPRKNQIEIKLEPPQRNSSSKLRSTGPRTSTTPSSLNSQTLSRSQPTVYISASPPNTDEVITRGQPKVYISANATTGDDQLVRNQPTLFISTNPGVSATSRNMSGQVSMGPAFIHHHPPKSRAVGNSTTATSPRVVVTQPNTKYTFKITVSPNKPPAVSPGVVSPTFEPTNLLNLPDHYVEPEGIQHLTDPVLAHVDRISDARKLSMGSDDAAYTQALLVHQKARMERLQRELEIQKKKLDKLKSEVNEMENNLTRRRLKRSNSVSQIPSLEEMQQLRSCNRQLQIDIDCLTKEIDLFQARGPHFNPSAIHNFYDNIGFLGPVPPKPKDQRSIVKTPKTVPDADEDEGAQWSCTACTFLNHPALNRCEQCEMPRHF", "length": 705 }, "evidence": [ { "id": "F1S7S1", "url": "https://omabrowser.org/oma/group/F1S7S1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1B7Z0-1", "protein_name": 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"TGF-beta-activated kinase 1 and MAP3K7-binding protein 2", "gene_name": "TAB2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQGSHQIDFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTRYLYGEGDLNFSDDSGISGLRNHMTSLNLDLQSQNIYHHGREGSRMNGSRTLTHSISDGQLQGGQSNSELFQQEPQTAPAQVPQGFNVFGMSSSSGASNSAPHLGFHLGSKGTSSLSQQTPRFNPIMVTLAPNIQTGRNTPTSLHIHGVPPPVLNSPQGNSIYIRPYITTPGGTTRQTQQHSGWVSQFNPMNPQQVYQPSQPGPWTTCPASNPLSHTSSQQPNQQGHQTSHVYMPISSPTTSQPPTIHSSGSSQSSAHSQYNIQNISTGPRKNQIEIKLEPPQRNNSSKLRSSGPRTSSTSSSVNSQTLNRNQPTVYIAASPPNTDELMSRSQPKVYISANAATGDEQVMRNQPTLFISTNSGASAASRNMSGQVSMGPAFIHHHPPKSRAIGNNSATSPRVVVTQPNTKYTFKITVSPNKPPAVSPGVVSPTFELTNLLNHPDHYVETENIQHLTDPTLAHVDRISETRKLSMGSDDAAYTQALLVHQKARMERLQRELEIQKKKLDKLKSEVNEMENNLTRRRLKRSNSISQIPSLEEMQQLRSCNRQLQIDIDCLTKEIDLFQARGPHFNPSAIHNFYDNIGFVGPVPPKPKDQRSIIKTPKTQDTEDDEGAQWNCTACTFLNHPALIRCEQCEMPRHF", "length": 693 }, "evidence": [ { "id": "F1S7S1", "url": "https://omabrowser.org/oma/group/F1S7S1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "molecular adaptor activity", "id": "GO:0060090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060090", "evidence": [ { "database": "UniProtKB", "id": "F1S7S1", "url": "https://www.uniprot.org/uniprotkb/F1S7S1" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1S7S1", "url": "https://www.uniprot.org/uniprotkb/F1S7S1" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "F1S7S1", "url": "https://www.uniprot.org/uniprotkb/F1S7S1" } ], "pmid": "" }, { "name": "ubiquitin binding", "id": "GO:0043130", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043130", "evidence": [ { "database": "UniProtKB", "id": "F1S7S1", "url": "https://www.uniprot.org/uniprotkb/F1S7S1" } ], "pmid": "" }, { "name": "K63-linked polyubiquitin modification-dependent protein binding", "id": "GO:0070530", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070530", "evidence": [ { "database": "UniProtKB", "id": "F1S7S1", "url": "https://www.uniprot.org/uniprotkb/F1S7S1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S7S1", "url": "https://www.uniprot.org/uniprotkb/F1S7S1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S7S1", "url": "https://www.uniprot.org/uniprotkb/F1S7S1" } ], "pmid": "" }, { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "F1S7S1", "url": "https://www.uniprot.org/uniprotkb/F1S7S1" } ], "pmid": "" }, { "name": "endosome membrane", "id": "GO:0010008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010008", "evidence": [ { "database": "UniProtKB", "id": "F1S7S1", "url": "https://www.uniprot.org/uniprotkb/F1S7S1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "inflammatory response", "id": "GO:0006954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006954", "evidence": [ { "database": "UniProtKB", "id": "F1S7S1", "url": "https://www.uniprot.org/uniprotkb/F1S7S1" } ], "pmid": "" }, { "name": "heart development", "id": "GO:0007507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007507", "evidence": [ { "database": "UniProtKB", "id": "F1S7S1", "url": "https://www.uniprot.org/uniprotkb/F1S7S1" } ], "pmid": "" }, { "name": "response to lipopolysaccharide", "id": "GO:0032496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032496", "evidence": [ { "database": "UniProtKB", "id": "F1S7S1", "url": "https://www.uniprot.org/uniprotkb/F1S7S1" } ], "pmid": "" }, { "name": "positive regulation of canonical NF-kappaB signal transduction", "id": "GO:0043123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043123", "evidence": [ { "database": "UniProtKB", "id": "F1S7S1", "url": "https://www.uniprot.org/uniprotkb/F1S7S1" } ], "pmid": "" }, { "name": "defense response to bacterium", "id": "GO:0042742", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042742", "evidence": [ { "database": "UniProtKB", "id": "F1S7S1", "url": "https://www.uniprot.org/uniprotkb/F1S7S1" } ], "pmid": "" }, { "name": "canonical NF-kappaB signal transduction", "id": "GO:0007249", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007249", "evidence": [ { "database": "UniProtKB", "id": "F1S7S1", "url": "https://www.uniprot.org/uniprotkb/F1S7S1" } ], "pmid": "" }, { "name": "non-canonical NF-kappaB signal transduction", "id": "GO:0038061", "url": 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"database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156984", "url": "https://www.ncbi.nlm.nih.gov/gene/100156984", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000571", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000571", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040546", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040546", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040757", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040757", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051101", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051101", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156984", "url": 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"categories": [ "Protein Classification", "Other" ] }, { "id": "PF18561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003121206", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121206", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S7S2", "url": "https://www.uniprot.org/uniprotkb/F1S7S2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7S2-1", "url": "https://www.uniprot.org/uniprotkb/F1S7S2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERSRKMEFFQKLGYGREDVLRVLDKLGEDALVNDVLQELIQTGSRPSAHQSSAAPAPLLVPRGCCGTPDSAQRGLAVDLEQESGCPASSLRPIVIDGSNVAMSHGNKEAFSCRGIQLAVDWFRDRGHTYIKVFVPSWRKDPPRSDTPIREQHVLEELERQAVLVYTPSRKVSGKRVVCYDDRYIVKVAYDQDGVIVSNDNYRDLQSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLNNFLSRKPKPPEPSWQHCPYGKKCTYGIKCKFYHPERPHHAQLAVADELRAQTRVWRSAGGEQGVSWGGPIARSGPREPGARSLPPARPLPDVATLEGSFSRLALSDDSGLLRATPPPRPSCPDWRVPGLPSSQPAPPGPRGGSRQGASKSDRCPPRPADPWALPPGAGRLLDRSSWAESGWDDTAFGGHLGSAAQVRAGEVDARAQARTVLCSIFPSHQVDSVMALFPALSDVTRLIFLIQRFQRSGEPMGKPLGASRGHRM", "length": 507, "header": "tr|F1S7S2-1|F1S7S2_PIG Isoform 1 of Zinc finger CCCH-type containing 12D OS=Sus scrofa OX=9823 GN=ZC3H12D PE=3 SV=2 CANONICAL=F1S7S2-1" }, "isoforms": [ { "isoform_ac": "F1S7S2-1", "url": "https://www.uniprot.org/uniprotkb/F1S7S2/entry#F1S7S2-1", "sequence": { "sequence": 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"https://www.ensembl.org/id/ENSSSCP00000004442.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S7S2", "url": "https://www.uniprot.org/uniprotkb/F1S7S2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156984", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156984", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A0I4-1", "protein_name": "Zinc finger CCCH type containing 12D", "gene_name": "Zc3h12d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MERRGKMEFFQKLGYSQEDVVRVLGKLGDGALVNDVLQELIQTGSRPKAQEDPANGTGIVLMPRGCCGVRDSAQQGLGLGLEEAGGDPASFLRPIVIDGSNVAMSHGNKEAFSCRGIRLAVDWFRDRGHTYIKVFVPSWRKEPSRSDTPIREQHVLEELERQAVLVYTPSRKVNGKRVVCYDDRYIVKLAYEKDGVIVSNDNYRDLQNENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFLSKKPRPPEPSWQHCPYGKKCTYGVKCRFYHPERPHQGQLPVADELRAKTRAWPGGGAGESRPPSARSRPGAARPLPLEPGAHNPTPAPQPAALTALNQSFARLTFSDTAASGVVSLSRGPDRMPTSGPTSWASPSLRAGSVATQGSPGLRCLRTPNSLLSPGDLGSPICPQSQPSDRHCSRGMHSDLPPQRRPPEDPWAFLPSSYGYLNHSVWAESAWSENTFGRPSGSAQSTINSGGTRASLCSAFPSDREDPVMASDPVLSDVALRTLLQRSQKTGAPLGDP", "length": 533 }, "evidence": [ { "id": "F1S7S2", "url": "https://omabrowser.org/oma/group/F1S7S2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BLF6-1", "protein_name": "Zinc finger CCCH-type containing 12D", "gene_name": "ZC3H12D", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQRSSKMEFFQKLGYSREDVARVLGKLGEDALVNDVLQELIQTGSRPAAPEGSAAPLLVPRGSCGTPDSAQGGLGADPGEDSGGPASSLRPIVIDGSNVAMSHGNKEIFSCRGIQLAVDWFRDRGHTYIKVFVPSWRKEPPRSDAPITEQHVLEELERQAVLVYTPSRKVSGKRVVCYDDRYIVKVAYDLDGVIVSNDNYRDLQSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFLSRKPKPPEPSWQHCPYGKKCTYGIKCKFYHPERPHQAQLAVADELRAQTRAWRGAGGEEERRGSARAASLAEQGGSRDAPAARPGPRELGTRSLPTARRSAGLATLESSFSRLFLSDDPGLLRAPHRGPGCGLAPGQPGPDWVAPGSLSSLPARPGLLSPPGLRGEYGPRAPQSDRRSPRQQPSDPWVLPPGAGQLPGRSAWAESDWDDGAFGGPLRPAPQAVAGEVDARSRARTALCSIFPPHEVDSIMALFPELSDVARLMLLIQRFQRSSAPVGKR", "length": 525 }, "evidence": [ { "id": "F1S7S2", "url": "https://omabrowser.org/oma/group/F1S7S2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BIY3-1", "protein_name": "Probable ribonuclease ZC3H12D", "gene_name": "Zc3h12d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEHRSKMEFFQKLGYSQEDVVRVLGKLGDSALVNDVLQELIQTGSRPRAQEDPASGTGVVLIPRGCCGVQDSAQQGPGTRPRRGWRRSSPLLRPIVIDGSNVAMSHGNKEAFSCRGIRLAVDWFTDRGHTYIKVFVPSWRKEPSRSDTPIREQHVLEELERQAVLVYTPSRKVNGKRVVCYDDRYIVKVAYEKDGIIVSNDNYRDLQNENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFLSKKPRPPEPSWQHCPYGKKCTYGVKCRFYHPERPHHGQLSVADELRAKTRAWLGGGAEEPRTPSARSRPTTARLLPQEPGEHDLPPAPQPAVLAALNRSFARLTFSDTAASGVVSQSRGPDWMPTGVPTSWAPPSLRAGSAATIGLPGMRSLRTPNNPLSPGDLGSPICPQARLSERHRSRDMHSDLPPQRRPLEDPWALLPSSYCYLNHSVWSESAWGEDIFRGPSESAQPVANGGGTRPVHCSFFPPDQDHPVMASGPPLSDMALLTLLQRSQKTGAPLGDP", "length": 533 }, "evidence": [ { "id": "F1S7S2", "url": "https://omabrowser.org/oma/group/F1S7S2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { 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"name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S7S2", "url": "https://www.uniprot.org/uniprotkb/F1S7S2" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S7S2", "url": "https://www.uniprot.org/uniprotkb/F1S7S2" } ], "pmid": "" }, { "name": "P-body", "id": "GO:0000932", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000932", "evidence": [ { "database": "UniProtKB", "id": "F1S7S2", "url": "https://www.uniprot.org/uniprotkb/F1S7S2" } ], "pmid": "" }, { "name": "cytoplasmic ribonucleoprotein granule", "id": "GO:0036464", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036464", "evidence": [ { "database": "UniProtKB", "id": "F1S7S2", "url": "https://www.uniprot.org/uniprotkb/F1S7S2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "3'-UTR-mediated mRNA destabilization", "id": "GO:0061158", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061158", "evidence": [ { "database": "UniProtKB", "id": "F1S7S2", "url": "https://www.uniprot.org/uniprotkb/F1S7S2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S7S2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7S2" }, { "id": "PS50103", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50103" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C3H1-type", "eco_id": "ECO_0000259", "start_pos": 250, "end_pos": 281, "start_aa": "Arg", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S7S8-1", "uniprot_ac": "F1S7S8", "uniprot_id": "F1S7S8_PIG", "mass": { "chemical_mass": 78638.0, "monoisotopic_mass": 78638.0 }, "refseq": {}, "gene_names": [ { "name": "METTL13", "type": "recommended", "evidence": [ { "id": "F1S7S8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7S8" } ] } ], "protein_names": [ { "name": "eEF1A lysine and N-terminal methyltransferase", "type": "recommended", "evidence": [ { "id": "F1S7S8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7S8/entry#names_and_taxonomy" } ] }, { "name": "Methyltransferase-like protein 13", "type": "synonym", "evidence": [ { "id": "F1S7S8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S7S8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Dual methyltransferase that catalyzes methylation of elongation factor 1-alpha (EEF1A1 and EEF1A2) at two different positions, and is therefore involved in the regulation of mRNA translation. Via its C-terminus, methylates EEF1A1 and EEF1A2 at the N-terminal residue 'Gly-2'. Via its N-terminus dimethylates EEF1A1 and EEF1A2 at residue 'Lys-55'. Has no activity towards core histones H2A, H2B, H3 and H4.", "evidence": [ { "database": "UniProtKB", "id": "F1S7S8", "url": "https://www.uniprot.org/uniprotkb/F1S7S8#function" }, { "database": "UniProtKB", "id": "ARBA00057391", "url": "https://www.uniprot.org/uniprotkb/ARBA00057391#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S7S8", "url": "https://www.uniprot.org/uniprotkb/F1S7S8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "METTL13", "url": "https://www.uniprot.org/uniprotkb/F1S7S8", "locus": { "chromosome": "9", "start_pos": 114218368, "end_pos": 114202484, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015483", "url": "https://www.ensembl.org/id/ENSSSCG00000015483" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015483", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015483", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02440", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02440", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041698", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041698", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051419", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051419", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FEWYGAF", "url": "https://omabrowser.org/oma/group/FEWYGAF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12176", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12176", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12176:SF78", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12176:SF78", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01564", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01564", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13649", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13649", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S7S8", "url": "https://www.uniprot.org/uniprotkb/F1S7S8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S7S8-1", "url": "https://www.uniprot.org/uniprotkb/F1S7S8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNLLPKSSKEFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPREKVLVIGCGNSELSEQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQLSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRVHQVANSQDQLLDSEPRFSLPVFAFIMTKFRPVPGSALQIFELCAQEQGKPVRLESAERLAEAVRERQQYAWLCSQLYRKAGLGSVSLDLCNGDTGEPRYTLHVVDSPTVKASRDSHFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLITVALHRGQQYEGMDSIQAELSARVMELAPAGMPAQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDVQGDDRRYFRRLIFLSNRNVVQSEARLLKDVSHRAQKKRKKDRKKQRPTDTPEDLPAAPGQSIDKSYLCCEHHKAMIAGLALLRNPELLLESPLALLVVGLGGGSLPLFVHDHFPKSCIDAVEIDPSMLQVATQWFGFSQSNRMKVHIADGLDYITSLAGEEARPHYDVIMFDVDSKDPTLGMSCPPPAFVAQPFLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILFCQPHPERKVATPELLEMAQALEQTLRKPGKGWDDTYVLSDMLKTVKIV", "length": 699, "header": "tr|F1S7S8-1|F1S7S8_PIG Isoform 1 of eEF1A lysine and N-terminal methyltransferase OS=Sus scrofa OX=9823 GN=METTL13 PE=3 SV=3 CANONICAL=F1S7S8-1" }, "isoforms": [ { "isoform_ac": "F1S7S8-1", "url": "https://www.uniprot.org/uniprotkb/F1S7S8/entry#F1S7S8-1", "sequence": { "sequence": "MNLLPKSSKEFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPREKVLVIGCGNSELSEQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQLSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRVHQVANSQDQLLDSEPRFSLPVFAFIMTKFRPVPGSALQIFELCAQEQGKPVRLESAERLAEAVRERQQYAWLCSQLYRKAGLGSVSLDLCNGDTGEPRYTLHVVDSPTVKASRDSHFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLITVALHRGQQYEGMDSIQAELSARVMELAPAGMPAQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDVQGDDRRYFRRLIFLSNRNVVQSEARLLKDVSHRAQKKRKKDRKKQRPTDTPEDLPAAPGQSIDKSYLCCEHHKAMIAGLALLRNPELLLESPLALLVVGLGGGSLPLFVHDHFPKSCIDAVEIDPSMLQVATQWFGFSQSNRMKVHIADGLDYITSLAGEEARPHYDVIMFDVDSKDPTLGMSCPPPAFVAQPFLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILFCQPHPERKVATPELLEMAQALEQTLRKPGKGWDDTYVLSDMLKTVKIV", "length": 699, "header": "tr|F1S7S8-1|F1S7S8_PIG Isoform 1 of eEF1A lysine and N-terminal methyltransferase OS=Sus scrofa OX=9823 GN=METTL13 PE=3 SV=3 CANONICAL=F1S7S8-1" }, "locus": { "chromosome": "9", "start_pos": 114218162, "end_pos": 114202807, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016866.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016866.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016415.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016415.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S7S8", "url": "https://www.uniprot.org/uniprotkb/F1S7S8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZV13-1", "protein_name": "eEF1A lysine and N-terminal methyltransferase", "gene_name": "Mettl13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNLLPKSSKEFGSADYWEKFFQHRGKKTFEWYGTYLELCEVLHKYIKPKEKVLVIGCGNSELSEQLYDVGYQDIMNIDISEVVIKQMKERNGSRRPHMSFLKMDMTHMEFPDATFQVVLDKGTLDAVLTDEEEKTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRVHQVTNSQDQVSEAEPRFSLPVFAFVMTKFRPVPGSALQIFELCTQEQGKPVRLESADRLAEAVRERQHYAWLCSQLRRKAAGLGSVSLDLCSGDTGEPRYTLHVVDNPAVKPSRDNHFAIFIIPQGRETEWLFGMEEGRKQLASSAGFRRLVTVALHRGQRYDSMESIQAELSARVMELAPAGMPPKQVPFLSVGGDIGVRTVQQRAHSALSGDYVIEDVQGEDRRYFRRLIFLSNRSVVQSEARLLKDVSHRGEVSHRAQKKRKKDKKKQQPADLSEDVPPAPGQCIDKSYLCCEHHKAMIAGLALLRNPELLLETPLALLVVGLGGGSLPLFIHDHFPKSRIDAVEIDPSMLEVATQWFGFAQSDRMKVHIADGLDYVTSLAGGEARPHYDVIMFDVDSKDPTLGMSCPPPAFVDQLFLQKVKSILSREGIFILNLVCRDLGLKESVLAGLRAAFPLLYVRRIEGEVNEILFCQLHPEQKLATPELLEQAQALERTLRKPGQSWDDTYVLSDMLKTVKIV", "length": 705 }, "evidence": [ { "id": "F1S7S8", "url": "https://omabrowser.org/oma/group/F1S7S8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0YTM9-1", "protein_name": "eEF1A lysine and N-terminal methyltransferase", "gene_name": "METTL13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MELLPRSPGEFGSARYWDRFFRQRGQRPFEWYGAFPELCPVLLKYVRPRDKVLVVGCGNSELSEQMYDTGMCEDIVNIDISDAVIRQMQERSASKRPKMSYLQMDMLHMDFPDAHFQVALDKGTLDAVLTDDEEVTLSKVDRMFAEISRVLQVGGRYLCVSLAQAHVLKKAVEYFSQEGWVVRVHEVATSGDKQQFVLPVFVYVMTKFRKIPGSALQILEMCPEEQDKPLRLESTERLVEAVKDRQHYALLCSQLSKAPCGEQLSLDLCDKGSGRPRYTLHVVDSPAVKPSRDNRFAIFIIPQGRETEWLFGTEEGRRQLAASAGFGRLVTVALHREQRYEGMASIQAELSGKVMELAPPGLPARQQVPFLSVGGDIGVRTVRHCDTSPLSGEFVVEDVKGEDACYFRRLVFLSNRNVVQSEARLLAPAPPPGQKKRRKDKKKPGPAEPPMAIDKSYLCCEHHKAMVAGLCLLGSSDPLPGTPIAVLVVGLGGGSLPLFVHDYFPQAHVAVVEIDPSMLEVATRWFGFSQGDRMQVHIADGLDHVAKLAAEASAQYDAIMFDVDSKDLTVGMSCPPPAFVEKPFLEKVKTILKPEGVFVLNLVCRDARLKESVLAILREVFPLLYARRIDGEVNEILFCQLSPESRRDPVELTVLAQALEGSMQQLGRSWDSSYVLADMLQAISIL", "length": 686 }, "evidence": [ { "id": "F1S7S8", "url": "https://omabrowser.org/oma/group/F1S7S8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A5PK19-1", "protein_name": "eEF1A lysine and N-terminal methyltransferase", "gene_name": "METTL13", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLLPKSSKEFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPREKVLVVGCGNSELSEQLYDVGYQDIVNIDISEVVIKQMKERNASRRPRMSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVRVHQVASSQDQLLEAEPRFSLPVFAFIMTKFRPVTGSALQIFELCAQEQGKPVRLESAEQLAEAVRERQQYAWLCSQLYRKAGLGSVSLDLCNGDTGEPRYTLHVVDSPTVKPSRDNHFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLITVALHRGQQYEGMDSIQAELSARVMELAPAGMPAQLQVPFLSVGGDIGVRIVQHQACSPLSGDYVIEDVQGDDKRYFRRLIFLSNRNVVQSEARLLQDVSHRAQKKRKKDRKKHRPADTPEDLPAAQGQSIDKSYLCCEHHKAMIAGLALLKNPELLLETPLALLVVGLGGGSLPLFIHDHFPKSCIHAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDFITRLAEEEARPHYDVIMFDVDSKDPTLGMSCPPPAFVAQLFLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILFCQLHSECKLATPELLEMARALEQTLRKPGKGWDDTYVLSDMLNTVKIV", "length": 699 }, "evidence": [ { "id": "F1S7S8", "url": "https://omabrowser.org/oma/group/F1S7S8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A5WVX1-1", "protein_name": "eEF1A lysine and N-terminal methyltransferase", "gene_name": "mettl13", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSLLPRTAEEFSSADYWERFFRKRGEKAFEWYGDYNSLCGVLHKYIKPRDKVLVVGCGNSELSEQLYDVGYRQLTNIDISETVVSHMNQRNAERRPDLSFQQLDATQTGFESGSFQVTLDKGTLDAMASEEDGALAGRMLAEVGRVLAVGGRYVCITLAQEHVIKLAVEHFVKGWAVRVHCLTGQQNEESDSSFALPVFVLVCTKFRQAPPFAVLELCQGEDGAPARLASVEELLSAVKERQAYNLMLHKLKGGTDSSSTPSLTLCHAASGRPRYTLTIQDGPPSAKTPRSNHFAIFIVPQGRESDWLYGSAEGRAQLASSAKFRRLVIVAMHRDQEYEDMQAVQSELSPVVMELAPPGMPANQQVPFLSVGGDLGWREVIGRGLSALTGEYSVEDVRGEDGYLYRRLIFMNNSQLVQSESRLQSAAAASSASKKKNKKKAKQPASTGAKDRSVDRGFLCCTHHEVMVAGLAMLGMDAINNKDQPVSVLLVGLGGGGLPQFVRDFVPCARVEVVELDPVVLDVAQTWFGFQIDDRLKVTLGDGLDHITTLESEGERYFDVIMFDVDSKDTTLGMSCPPPAFVETSLLKKVYSLLSPRGLFMLNLVCRDSALRKSVLDRVHSVFPCVFSRGIEGEVNEVLLCCRSSGEHKPHTVPQTLQQTAKDLQKTLRANSQTAPQIDITAMLNDLKVV", "length": 690 }, "evidence": [ { "id": "F1S7S8", "url": "https://omabrowser.org/oma/group/F1S7S8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3GZJ7-1", "protein_name": "eEF1A lysine and N-terminal methyltransferase", "gene_name": "Eef1aknmt", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNLLPKSSKEFGSVDYWEKFFQQRGKRSFEWYGTYLELCEVLHKYIKPREKVLVIGCGNSELSEQLYDVGYEDIVNIDISEVVIKQMKERNAGRRPRMSFMKMDMTQMDFPDATFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRVHQVANSQDQVFEAEPRFSLPVFAFVMTKFRPVPGSALHIFELCTQEQGKPVRLESADRLAEAVRERQHYAWLCSQLRRKAGLGSISLDLCSGDTGEPRYTLHVVDNPTVKPSRDSHFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLVTVALHRGQQYDGMESIQAELSTRVMELAPAGMPPQQQVPFLSVGGDIGVRTVQHQDHSALSGDYVIEDVQGEDRWYFRRLIFLSNRNVVQSEARLLKDVSHRAQKKRKKDRKKHRPADTPEDFPSAPGQSIDKSYLCCEHHKAMIAGLALLRNPEQLLETPLTLLVVGLGGGSLPLFVHDHFPESRVDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYITSLAGGEARPHYDVIMFDVDSKDPTLGMSCPPPAFVDQLFLQKVKSILSHEGIFILNLVCRDLELKDSVLAGLKAAFPLLYVRRIEGEVNEILFCQLQPEQKLATPELLEMAQALERTLRKPGQGWDDTYVLSDMLKTVTIV", "length": 699 }, "evidence": [ { "id": "F1S7S8", "url": "https://omabrowser.org/oma/group/F1S7S8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8N6R0-5", "protein_name": "eEF1A lysine and N-terminal methyltransferase", "gene_name": "METTL13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNLLPKSSREFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPREKVLVIGCGNSELSEQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRVHQVANSQDQVLEAEPQFSLPVFAFIMTKFRPVPGSALQIFELCAQEQRKPVRLESAERLAEAVQERQQYAWLCSQLRRKARLGSVSLDLCDGDTGEPRYTLHVVDSPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESMDHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDVQGDDKRYFRRLIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDLPAAPGQSIDKSYLCCEHHKAMIAGLALLRNPELLLEIPLALLVVGLGGGSLPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYIASLAGGGEARPCYDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILFCQLHPEQKLATPELLETAQALERTLRKPGRGWDDTYVLSDMLKTVKIV", "length": 699 }, "evidence": [ { "id": "F1S7S8", "url": "https://omabrowser.org/oma/group/F1S7S8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q91YR5-3", "protein_name": "eEF1A lysine and N-terminal methyltransferase", "gene_name": "Mettl13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNLLPKSSKEFGSADYWEKFFQQRGKTAFEWYGTYLELCEVLHKYIKPKEKVLVIGCGNSELSEQLYDVGYQDIVNIDISEVVIKQMKERNGSRRPHMSFLKMDMTQLEFPDATFQVVLDKGTLDAVLTDEEEVTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRAHQVASSQDRVSEAEPRFSLPVFAFVMTKFRPVPGSALQIFELCTQEQGKPVRLESADQLAEAVRERQYYAWLCSQLRRKAGLGSVSLDLCSGDTGEPRYTLHVVDNPAVKPSRDNHFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLVTVALHRGQRYAGMESIQAELSARVMELAPAGLPPQQQVPFLSVGGDIGVRTVQHQDHSALSGDYVIEDVQGEDRWYFRRLIFLSNRNVVQSEARLLKDTSHRAQKKRKKDRKKQRPADTSEDFPPAPGQSIDKSYLCCEHHKAMVAGLALLRNPELLLETPLTLLVVGLGGGSLPLFVHDHFPKSRIDAVEIDPTMLEVATQWFGFSQSDRMKVHIADGLDYITSLAGEAPPHYDVIMFDVDSKDPTLGMSCPPPAFVDQVFLQKVKSILCHDGVFILNLVCRDVRLKDSVLAGLKAAFPLLYVRRIEGEVNEILFCQLHPEQKLATPELLEMAQVLERTLRKPGQGWDDTYVLSDMLKTVKIV", "length": 698 }, "evidence": [ { "id": "F1S7S8", "url": "https://omabrowser.org/oma/group/F1S7S8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VIK9-1", "protein_name": "eEF1A lysine and N-terminal methyltransferase homolog", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNLLPKTREEFAQTDYWNEFFKKRGEKAFEWYGEYLELCDQIHKYIKPADRILMLGCGNSKLSMDMYDTGFRDITNIDISPIAVKKMLELNAKSRPEMKFLQMDATAMTFPDESFSVSLDKGTLDALFADDEPETRAVVENYFKEILRTMRNGGRYVGISLLQEHILNFLLDFLPKHNCMLRIVHCLGVEQANKEKNADDALTLPVFVVVATKFKSLPMPVLEFGFGNDKMQRFTTVSELNSAVSSVQKAALVCNGLARSNIAGHNEVIMDLHRPSEQTPRYTIHILDKPPARGLGKYAAFIVPQGREVEWIFSTPAGRKKLQDSANFQRLAVVTLHRDQVYSTLDEVKQELADSIKNLSPAGLTDQIPYLSLGSDVGKRETLICGFSKISGDFRIEEVEANGKTLRRLIFLSNQFVVQSEALVKTVKIKGKKDRKKIDFGYLACQHHLYMSVGVQLATTVQHPKRDVEKDVLVVGLGGGGLCSFLHAALPQARITAVEIDPIMLEVAEQYFELKQDKRFHVVIDDGLDFVERCRNEDIHFDAVLFDVDSKDLSLGMSCPPQSFLATKILQHIKEIIGPKGLFMLNLVCRDESLRTEALNNLHKVFPAVCSYKLEEDINEIIYCANDEKYKTVEQWKKNMGTAGRGLNSAVKETKLASEDALEVAEFLSELKI", "length": 673 }, "evidence": [ { "id": "F1S7S8", "url": "https://omabrowser.org/oma/group/F1S7S8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S7S8", "url": "https://www.uniprot.org/uniprotkb/F1S7S8" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1S7S8", "url": "https://www.uniprot.org/uniprotkb/F1S7S8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S7S8", "url": "https://www.uniprot.org/uniprotkb/F1S7S8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "methylation", "id": 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"MDLANHGLILLQQLNAQREFGFLCDCTVAIGDVYFKAHKSVLASFSNYFKMLFVHQTSECVRLKPTDIQPDIFSYLLHLMYTGKMAPQLIDPVRLEQGIKFLHAYPLIQEASLASQGAFSHPDQVFPLASSLYGIQIADHQLRQATKIASAPDKLGREARPQPPRMSQEQVPEASQLSQLPANLTQVNRTHMTPSDPLQTSLSPDLVSTPVPPPPPGEETNLEASSSDEQPASLTIAHVKPSIMKRNGSFPKYYACHLCGRRFTLRSSLREHLQIHTGVPFPASQPGESRVPLSLCSTTADLGKDAMEVPEAGMISDSELQHISDSPIIDGQPHSETPPPSDIADIDNLEQADQEREVKRRKYECTICGRKFIQKSHWREHMYIHTGKPFKCSTCDKSFCRANQAARHVCLNQSIDTYTMVDKQTLELCTFEEGSQMDNLLVQTNKPYKCNLCDKTFSTPNEVVKHSCQNQNSDVFALDEGRSILLGSGDSEVTEPDHPVLASIKKEQETVLLD", "length": 514, "header": "tr|F1S7W1-1|F1S7W1_PIG Isoform 1 of Zinc finger and BTB domain containing 2 OS=Sus scrofa OX=9823 GN=ZBTB2 PE=4 SV=3 CANONICAL=F1S7W1-1" }, "locus": { "chromosome": "1", "start_pos": 14893549, "end_pos": 14885972, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004521.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004521.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004419.4", "url": "https://www.ensembl.org/id/ENSSSCP00000004419.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S7W1", "url": "https://www.uniprot.org/uniprotkb/F1S7W1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157847", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157847", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7FGG7-1", "protein_name": "Zinc finger and BTB domain-containing protein 2 isoform X1", "gene_name": "Zbtb2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCTSRHTNQFLLHSPITLRCCLSIRPEIRISFCSGYCRTSFSEDGLRRAPYFFTIAVWSGSDTSLKGRQPAGSLCSECVRLKPTDIQPDIFSYLLHLMYTGKMAPQLIDPVRLEQGIKFLHAYPLIQEASLASQGTFSHPEQVFPLASSLYGIQIADHQLRQATKMNLGPEKLGREPRPQASRMNQEPVPETSQLSQLTTNLAQVNRTNMTPADPLQTSLSPELVSTPVPPPPPGEETNLEASSSDEQPSSLTIAHVKPSIMKRNGSFPKYYACHLCGRRFTLRSSLREHLQIHTGVPFTAGPPGEGRGPLSLCNNAADLGKDALEVPEGGMISDSELQHISDSPIIDGQQQSETPPPSDIADIDNLEQADQEREVKRRKYECTICGRKFIQKSHWREHMYIHTGKPFKCSTCDKSFCRANQAARHVCLNQSIDTYTMVDKQTLELCTFEEGSQMDNMLVQANKPYKCNLCDKTFSTPNEVVKHSCQNQNSDVFALDEGRSVLLGSGDSEVTESDRPVLASIKKEQETVLLD", "length": 532 }, "evidence": [ { "id": "F1S7W1", "url": "https://omabrowser.org/oma/group/F1S7W1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D4ABS0-1", "protein_name": "Zinc finger and BTB domain containing 2", "gene_name": "Zbtb2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTPVPGLRAKQLNAQREFGFLCDCTVAIGDVYFKAHKSVLASFSNYFKMLFVHQTSECVRLKPTDIQPDIFSYLLHLMYTGKMAPQLIDPVRLEQGIKFLHAYPLIQEASLASQGTFSHPEQVFPLASSLYGIQIADHQLRQATKMNLGPEKLGREPRPQASRMNQEPVPETSQLSQLTSNLAQVNRTNMTPADPLQTSLSPELVSTPVPPPPPGEETNLEASSSDEQPSSLTIAHVKPSIMKRNGSFPKYYACHLCGRRFTLRSSLREHLQIHTGVPFTAGPPGEGRGPLSLCSNAADLGKDALEVPEAGMISDSELQHISDSPIIDGQQQSETPPPSDIADIDNLEQADQEREVKRRKYECTICGRKFIQKSHWREHMYIHTGKPFKCSTCDKSFCRANQAARHVCLNQSIDTYTMVDKQTLELCTFEEGSQMDNMLVQANKPYKCNLCDKTFSTPNEVVKHSCQNQNSDVFALDEGRSVLLGSGDSEVTDPDHPVLAAIKKEQETVLLD", "length": 512 }, "evidence": [ { "id": "F1S7W1", "url": "https://omabrowser.org/oma/group/F1S7W1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BNH4-1", "protein_name": "Zinc finger and BTB domain containing 2", "gene_name": "ZBTB2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDLANHGLILLQQLNAQREFGFLCDCTVAIGDVYFKAHKSVLASFSNYFKMLFVHQTSECVRLKPTDIQPDIFSYLLHLMYTGKMAPQLIDPVRLEQGIKFLHAYPLIQEASLASQGAFSHPDQVFPLASSLYGIQIADHQLRQATKITSAPEKLGREPRPQATRMSQEQGPEASQLSQLPSNLSQVNRTHMTPSDPLQTSLSPDLVSTPVPPPPPGEETNLEASSSDEQPAPLTIAHVKPSIMKRNGSFPKYYACHLCGRRFTLRSSLREHLQIHTGVPFTASQPGESRVPLSLCSNAADLGKDAMEVPEAGIISDSELQHISDSPIIDGQPHSETPPPSDIADIDNLEQADQEREVKRRKYECTICGRKFIQKSHWREHMYIHTGKPFKCSTCDKSFCRANQAARHVCLNQSIDTYTMVDKQTLELCTFEEGSQMDNMLVQTNKPYKCNLCDKTFSTPNEVVKHSCQNQNSDVFALEEGRSILLGSGDSEVTEPDHPVLASIKKEQETVLLD", "length": 514 }, "evidence": [ { "id": "F1S7W1", "url": "https://omabrowser.org/oma/group/F1S7W1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F2Z4W3-1", "protein_name": "Zinc finger and BTB domain-containing protein 2b", "gene_name": "zbtb2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MELANHGLILLQQLNAQREFGFLCDCTVAIGDVFFKAHKAVLAAFSNYFRMLFIHQDSDCVRLKPADIQPDIFSYLLNLMYTGKLATQLIDPARLEQGVKFLHAYPLIQEATLASHAPQAHPEVNLPLSSSLYGIQISDQQATLTNRLSARTPLSSPFDLEGTGLLDGKSSAASKATSLTRSGTKHRHAPSEPEVEASASISQFLRESAEPETSATEAPSCSLSANTILHVKPSIMRRTSSLRKHYTCHVCGGRFTQRGALREHLLLHTQAMLPLVLESVGATSPMLSGGAATPEVEEVLRGSEAAAATPIIVDVPSDSEQHSYSKDSPHPETAIPVPTTTAVSLCTAQPQADTPPPSDIADIDNLEGAADMEREVKRRKYECSTCGRKFIQKSHWREHMYIHTGKPYRCSACGKSFCRANQAARHVCMNLGSEPAYTMVDRQSMELCAADDSSQMEAMFLGSSGRPYKCNVCEMTFSSPNEVIKHLCFNQGALSGGAAGEMGVSGMNSDSLAKDEGSDSSNGGPLMTPIKTEEVFVE", "length": 538 }, "evidence": [ { "id": "F1S7W1", "url": "https://omabrowser.org/oma/group/F1S7W1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8N680-1", "protein_name": "Zinc finger and BTB domain-containing protein 2", "gene_name": "ZBTB2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDLANHGLILLQQLNAQREFGFLCDCTVAIGDVYFKAHKSVLASFSNYFKMLFVHQTSECVRLKPTDIQPDIFSYLLHLMYTGKMAPQLIDPVRLEQGIKFLHAYPLIQEASLASQGAFSHPDQVFPLASSLYGIQIADHQLRQATKIASAPEKLGRDPRPQTSRISQEQVPEASQLSQLTSNLAQVNRTNMTPSDPLQTSLSPELVSTPVPPPPPGEETNLEASSSDEQPASLTIAHVKPSIMKRNGSFPKYYACHLCGRRFTLRSSLREHLQIHTGVPFTSSQQGESRVPLTLCSNAADLGKDAMEVPEAGMISDSELQHISDSPIIDGQQQSETPPPSDIADIDNLEQADQEREVKRRKYECTICGRKFIQKSHWREHMYIHTGKPFKCSTCDKSFCRANQAARHVCLNQSIDTYTMVDKQTLELCTFEEGSQMDNMLVQTNKPYKCNLCDKTFSTPNEVVKHSCQNQNSDVFALDEGRSILLGSGDSEVTEPDHPVLASIKKEQETVLLD", "length": 514 }, "evidence": [ { "id": "F1S7W1", "url": "https://omabrowser.org/oma/group/F1S7W1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1S7W1", "url": "https://www.uniprot.org/uniprotkb/F1S7W1" } ], "pmid": "" }, { "name": "regulation of immune system process", "id": "GO:0002682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002682", "evidence": [ { "database": "UniProtKB", "id": "F1S7W1", "url": "https://www.uniprot.org/uniprotkb/F1S7W1" } ], "pmid": "" }, { "name": "regulation of cytokine production", "id": "GO:0001817", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001817", "evidence": [ { "database": "UniProtKB", "id": "F1S7W1", "url": "https://www.uniprot.org/uniprotkb/F1S7W1" } ], "pmid": "" }, { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "F1S7W1", "url": "https://www.uniprot.org/uniprotkb/F1S7W1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S7W1", "url": "https://www.uniprot.org/uniprotkb/F1S7W1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1S7W1", "url": "https://www.uniprot.org/uniprotkb/F1S7W1" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1S7W1", "url": "https://www.uniprot.org/uniprotkb/F1S7W1" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1S7W1", "url": "https://www.uniprot.org/uniprotkb/F1S7W1" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1S7W1", "url": "https://www.uniprot.org/uniprotkb/F1S7W1" } ], "pmid": "" }, { "name": "methyltransferase activity", "id": "GO:0008168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008168", "evidence": [ { "database": "UniProtKB", "id": "F1S7W1", "url": "https://www.uniprot.org/uniprotkb/F1S7W1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 183, "end_pos": 185, "annotation": "n_glycosylation_sequon" }, { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 247, "end_pos": 249, "annotation": "n_glycosylation_sequon" }, { "start_pos": 412, "end_pos": 414, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": 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"label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 183, "end_pos": 185 }, { "start_pos": 188, "end_pos": 190 }, { "start_pos": 247, "end_pos": 249 }, { "start_pos": 412, "end_pos": 414 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF06328", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8984722", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8984722", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9020591", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020591", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013844332", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013844332", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S826", "url": "https://www.uniprot.org/uniprotkb/F1S826", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S826-1", "url": "https://www.uniprot.org/uniprotkb/F1S826-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARTVCGCSWALIFIIMSLLVKAKIDVCKRGDVTVQPSHVISLGSAVNISCSLKPRQGCLQVSSLNKLILYRFHRRIHFQRGHSLSSQVTGLPLGTTLFVCKLACSSKEEIRICGAEISVGVVPEQPQNVSCMQKGERGTVACSWDRGRDTHLYTAYTLQLNGPKNLTWQKQCSDYYCDSLDLGINLPPESPESSYTAQVTAINSLGTASSFPCTFTLLDVVRPLPPWDIRIKCVNASVSTCTLQWRDEGLVLLNRLRYRPVYSRSWNMVNATNAKGRHDLVDLKPFTEYEFQISSKPHLQKGRWSDWSESLRTQTPEKEPTGMLDVWYMKQHIDYKRQQISLFWKNLSLSEARGKILHYQVTLQEVAEGNATLQNITERNSWTWTIPRTGIWAAAVSAANSKGSSLPTRINIADLCGAGLLAPQQVSANPEGSDNLLVKWTSPGEGATAVQEYVVEWRELHLRGGMQPPLSWLRSPPYNTSTLISDNIKPYICYEIRVHALSGDQGGCSSIRGDLKHKAPLSGPHINAISEEKGSILISWDEIPAQEQMGCILHYRIYWKERDSDSQPQLCEIPYRVSPKSHPINSLQPRVTYVLWMTALTAAGESPQGNEREFCLQGKANWSTFVAPSICIAVITVGVFSMRCFRQKVFVLLLALRPQWCSREIPDPANSTWAKKYPIVEEKKQLSLDRLLADWPTPEEPEPLVINEVLPQVTPVFRRPHHPNWPGKGQRLQGHHASEEDTGSSASSPPPPRALTAETGPAVDLYKVLGSRRPDSKPGNPVSHLTVLPVDYLPTHEGYLPSNMDYLPSHEAPTTDSLEELPQHISLSVFPSNSLHPLTFSCGEKLTLDQLKMGCGSLML", "length": 861, "header": "tr|F1S826-1|F1S826_PIG Isoform 1 of Interleukin-12 receptor subunit beta-2 OS=Sus scrofa OX=9823 GN=IL12RB2 PE=3 SV=2 CANONICAL=F1S826-1" }, "isoforms": [ { "isoform_ac": "F1S826-1", "url": "https://www.uniprot.org/uniprotkb/F1S826/entry#F1S826-1", "sequence": { "sequence": "MARTVCGCSWALIFIIMSLLVKAKIDVCKRGDVTVQPSHVISLGSAVNISCSLKPRQGCLQVSSLNKLILYRFHRRIHFQRGHSLSSQVTGLPLGTTLFVCKLACSSKEEIRICGAEISVGVVPEQPQNVSCMQKGERGTVACSWDRGRDTHLYTAYTLQLNGPKNLTWQKQCSDYYCDSLDLGINLPPESPESSYTAQVTAINSLGTASSFPCTFTLLDVVRPLPPWDIRIKCVNASVSTCTLQWRDEGLVLLNRLRYRPVYSRSWNMVNATNAKGRHDLVDLKPFTEYEFQISSKPHLQKGRWSDWSESLRTQTPEKEPTGMLDVWYMKQHIDYKRQQISLFWKNLSLSEARGKILHYQVTLQEVAEGNATLQNITERNSWTWTIPRTGIWAAAVSAANSKGSSLPTRINIADLCGAGLLAPQQVSANPEGSDNLLVKWTSPGEGATAVQEYVVEWRELHLRGGMQPPLSWLRSPPYNTSTLISDNIKPYICYEIRVHALSGDQGGCSSIRGDLKHKAPLSGPHINAISEEKGSILISWDEIPAQEQMGCILHYRIYWKERDSDSQPQLCEIPYRVSPKSHPINSLQPRVTYVLWMTALTAAGESPQGNEREFCLQGKANWSTFVAPSICIAVITVGVFSMRCFRQKVFVLLLALRPQWCSREIPDPANSTWAKKYPIVEEKKQLSLDRLLADWPTPEEPEPLVINEVLPQVTPVFRRPHHPNWPGKGQRLQGHHASEEDTGSSASSPPPPRALTAETGPAVDLYKVLGSRRPDSKPGNPVSHLTVLPVDYLPTHEGYLPSNMDYLPSHEAPTTDSLEELPQHISLSVFPSNSLHPLTFSCGEKLTLDQLKMGCGSLML", "length": 861, "header": "tr|F1S826-1|F1S826_PIG Isoform 1 of Interleukin-12 receptor subunit beta-2 OS=Sus scrofa OX=9823 GN=IL12RB2 PE=3 SV=2 CANONICAL=F1S826-1" }, "locus": { "chromosome": "6", "start_pos": 145279852, "end_pos": 145214178, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004204.6", "url": "https://www.ensembl.org/id/ENSSSCT00000004204.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004110.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004110.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 698, "start_aa": "Thr", "end_pos": 698, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr698", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S826", "url": "https://www.uniprot.org/uniprotkb/F1S826" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8984722", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8984722", "resource": "Reactome", "description": "Interleukin-35 Signalling" }, { "id": "R-SSC-9020591", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020591", "resource": "Reactome", "description": "Interleukin-12 signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "F1LRH7-1", "protein_name": "Interleukin-12 receptor subunit beta-2", "gene_name": "Il12rb2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHTVRGCSLALIFLFMWLLIKANIDVCKLGTVTVQPAPVIPLGSTANISCSLNPKQGCSHYPSYNELILLKFVNDVLVEKLHGKKVHGHPSHSSIFQVTNLSLGMTLFVCKLNCSNSQKTQPVPVCGVEISVGVAPESPQSISCVQKGEHGTVACSWNSGKVTYLKTYYTLQLTGPNNVTYQNQCYSDNRQNCSRLDLGINLTPDLAESRFIVHVTATNDLGNSSSLLHTFTFLDIVRPLPPWDIRINFLNASGSRCTLQWEDEGQVVLNRLRYQPLNSTSWNMVNATNAKGRYDLQDLRPFTEYEFQISSKLHLSQGSWSNWSESLRTRTPEEEPVGTLDIWYMKQDIDCDRQQISLFWKSLNPSEARGKILHYQVTLQEVTKKTTLQNTTRHTFWTGVIPRTGAWTASVSAANSKGTSAPTHINIVDLCGTGFLAPHQVSAKSGNMDNIMVTWQPPGKADSVIREYIVEWRALQQGSVMNLTPHWLRIPPYNMSALISEKIKPYICYEIRVHALSEDQGGCSSIRGDSSHKVPLSGPHITAITEKKESLFISWTHIPFLEQRGCILHYRIYWKERHSTAQPELCEIQYRHSQNSHPISSLQPKVTYVLWMTAVTAAGESPQGNEREFCPQGKANWKTFVISSICIAIIVVGTFSIRYFRQKAFTLLSTLKPQWYCRTIPDPANSTWVKKYPIMEEKIQPPMDNLLMAWSAPEEPEPLIINEVLYQMIPVGRQPYCFKRGQGFQGYSTSKEDTIYLATNPQTTGTLTAESRQLVNLYKVLGSRDPDSKLGNLTSPLTVTPVNYLPTHEGYLPSNIEDLSSHEVDPSDSLDLDHQHISLSIFASSSLRPLTFCGERLTLDRLKMGYEK", "length": 869 }, "evidence": [ { "id": "F1S826", "url": "https://omabrowser.org/oma/group/F1S826/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P97378-1", "protein_name": "Interleukin-12 receptor subunit beta-2", "gene_name": "Il12rb2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q99665-1", "protein_name": "Interleukin-12 receptor subunit beta-2", "gene_name": "IL12RB2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "F1S826", "url": "https://www.uniprot.org/uniprotkb/F1S826" } ], "pmid": "" }, { "name": "interleukin-12-mediated signaling pathway", "id": "GO:0035722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035722", "evidence": [ { "database": "UniProtKB", "id": "F1S826", "url": "https://www.uniprot.org/uniprotkb/F1S826" } ], "pmid": "" }, { "name": "positive regulation of type II interferon production", "id": "GO:0032729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032729", "evidence": [ { "database": "UniProtKB", "id": "F1S826", "url": "https://www.uniprot.org/uniprotkb/F1S826" } ], "pmid": "" }, { "name": "cytokine-mediated signaling pathway", "id": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S845-1", "uniprot_ac": "F1S845", "uniprot_id": "F1S845_PIG", "mass": { "chemical_mass": 86807.0, "monoisotopic_mass": 86807.0 }, "refseq": { "ac": "XP_020929143", "name": "transcription initiation factor TFIID subunit 5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929143" }, "gene_names": [ { "name": "TAF5", "type": "recommended", "evidence": [ { "id": "F1S845", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S845" } ] }, { "name": "TAF5", "type": "synonym", "evidence": [ { "id": "XP_020929143", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929143" } ] } ], "protein_names": [ { "name": "Transcription initiation factor TFIID subunit 5", "type": "recommended", "evidence": [ { "id": "F1S845", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S845/entry#names_and_taxonomy" } ] }, { "name": "Transcription initiation factor TFIID 100 kDa subunit", "type": "synonym", "evidence": [ { "id": "F1S845", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S845/entry#names_and_taxonomy" } ] }, { "name": "transcription initiation factor TFIID subunit 5", "type": "synonym", "evidence": [ { "id": "XP_020929143", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929143" } ] } ], "function": [ { "annotation": "The TFIID basal transcription factor complex plays a major role in the initiation of RNA polymerase II (Pol II)-dependent transcription. TFIID recognizes and binds promoters with or without a TATA box via its subunit TBP, a TATA-box-binding protein, and promotes assembly of the pre-initiation complex (PIC). The TFIID complex consists of TBP and TBP-associated factors (TAFs), including TAF1, TAF2, TAF3, TAF4, TAF5, TAF6, TAF7, TAF8, TAF9, TAF10, TAF11, TAF12 and TAF13. The TFIID complex structure can be divided into 3 modules TFIID-A, TFIID-B, and TFIID-C. TAF5 is involved in two modules of TFIID, in TFIID-A together with TAF3 and TBP, and in TFIID-B with TAF8. Involved in contacts between TFIID and TFIIF in the PIC.", "evidence": [ { "database": "UniProtKB", "id": "F1S845", "url": "https://www.uniprot.org/uniprotkb/F1S845#function" }, { "database": "UniProtKB", "id": "ARBA00058398", "url": "https://www.uniprot.org/uniprotkb/ARBA00058398#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S845", "url": "https://www.uniprot.org/uniprotkb/F1S845" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TAF5", "url": "https://www.uniprot.org/uniprotkb/F1S845", "locus": { "chromosome": "14", "start_pos": 114321626, "end_pos": 114304557, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010597", "url": "https://www.ensembl.org/id/ENSSSCG00000010597" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010597", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010597", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08044", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08044", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152210", "url": "https://www.ncbi.nlm.nih.gov/gene/100152210", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006594", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006594", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007582", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007582", "database": 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"Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6804756", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6807505", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807505", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73776", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73776", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73779", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73779", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75953", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75953", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-76042", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76042", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020929143", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929143", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S845", "url": "https://www.uniprot.org/uniprotkb/F1S845", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S845-1", "url": "https://www.uniprot.org/uniprotkb/F1S845-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGGGGATNNGPNGGGGNVAASSSAGGDGGTPKPSVAVSAVAPAGVAPVAAAAPEAGGPHDRQTLLAVLQFLRQNNLREAEEALRREARLLEEAVAGSGAPGEADGAGAETASALLSRVTSSGPGPAAPEPPGSAASGASAVSGLATGPAAPGKVGSLAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDNIGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAVKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSPQ", "length": 800, "header": "tr|F1S845-1|F1S845_PIG Isoform 1 of Transcription initiation factor TFIID subunit 5 OS=Sus scrofa OX=9823 GN=TAF5 PE=3 SV=3 CANONICAL=F1S845-1" }, "isoforms": [ { "isoform_ac": "F1S845-1", "url": "https://www.uniprot.org/uniprotkb/F1S845/entry#F1S845-1", "sequence": { "sequence": "MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGGGGATNNGPNGGGGNVAASSSAGGDGGTPKPSVAVSAVAPAGVAPVAAAAPEAGGPHDRQTLLAVLQFLRQNNLREAEEALRREARLLEEAVAGSGAPGEADGAGAETASALLSRVTSSGPGPAAPEPPGSAASGASAVSGLATGPAAPGKVGSLAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDNIGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAVKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSPQ", "length": 800, "header": "tr|F1S845-1|F1S845_PIG Isoform 1 of Transcription initiation factor TFIID subunit 5 OS=Sus scrofa OX=9823 GN=TAF5 PE=3 SV=3 CANONICAL=F1S845-1" }, "locus": { "chromosome": "14", "start_pos": 114320787, "end_pos": 114304594, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011591.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011591.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011289.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011289.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S845", "url": "https://www.uniprot.org/uniprotkb/F1S845" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152210", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152210", "resource": "KEGG Pathway" }, { "id": "R-SSC-674695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-674695", "resource": "Reactome", "description": "RNA Polymerase II Pre-transcription Events" }, { "id": "R-SSC-6804756", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "resource": "Reactome", "description": "Regulation of TP53 Activity through Phosphorylation" }, { "id": "R-SSC-6807505", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807505", "resource": "Reactome", "description": "RNA polymerase II transcribes snRNA genes" }, { "id": "R-SSC-73776", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73776", "resource": "Reactome", "description": "RNA Polymerase II Promoter Escape" }, { "id": "R-SSC-73779", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73779", "resource": "Reactome", "description": "RNA Polymerase II Transcription Pre-Initiation And Promoter Opening" }, { "id": "R-SSC-75953", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75953", "resource": "Reactome", "description": "RNA Polymerase II Transcription Initiation" }, { "id": "R-SSC-76042", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76042", "resource": "Reactome", "description": "RNA Polymerase II Transcription Initiation And Promoter Clearance" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZH66-1", "protein_name": "Transcription initiation factor TFIID subunit 5", "gene_name": "Taf5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALAEEQTEVAVKLESEGPPTLLPPQAGDGAGEGSGGTPNNGPNGGGGNVAAAAGGDGGTPKPVVAVSAAAPAGAAPVPAAPAEAGAPHDRQTLLAVLQFLRQSNLREAEEALRREARLLEEAVAGSGAPGELDGAGAEAASALLSRVTASVPGSAAPDTPGAGASVTSVFSGSASGPAAPGKVASVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHESEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSPQ", "length": 798 }, "evidence": [ { "id": "F1S845", "url": "https://omabrowser.org/oma/group/F1S845/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BEN8-1", "protein_name": "Transcription initiation factor TFIID subunit 5", "gene_name": "TAF5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGGGGTTNSGPNGGGGNVAAASSAGGDGGTPKPSVAVSAVAPAGAAPVPAAAPEASAPHDRQTLLAVLQFLRQSNLREAEEALRREARLLEEAVAGSGAPGEADSAGAETASALLSRVTASAPGPSAPDPPVSGASGSAAVSGLATGSVAPGKVGSVSVEDQPDVSAVLSAYSQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAVKAFEDVETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSPQ", "length": 800 }, "evidence": [ { "id": "F1S845", "url": "https://omabrowser.org/oma/group/F1S845/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P38129-1", "protein_name": "SAGA complex/transcription factor TFIID complex subunit TAF5", "gene_name": "TAF5", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSQKQSTNQNQNGTHQPQPVKNQRTNNAAGANSGQQPQQQSQGQSQQQGRSNGPFSASDLNRIVLEYLNKKGYHRTEAMLRAESGRTLTPQNKQSPANTKTGKFPEQSSIPPNPGKTAKPISNPTNLSSKRDAEGGIVSSGRLEGLNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKNPVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIVESVTAREKLADGIKVLSDSENGNGKQNLEMNSVPVKLGPFPKDEEFVKEIETELKIKDDQEKQLNQQTAGDNYSGANNRTLLQEYKAMNNEKFKDNTGDDDKDKIKDKIAKDEEKKESELKVDGEKKDSNLSSPARDILPLPPKTALDLKLEIQKVKESRDAIKLDNLQLALPSVCMYTFQNTNKDMSCLDFSDDCRIAAAGFQDSYIKIWSLDGSSLNNPNIALNNNDKDEDPTCKTLVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSKEGNVLISGGADHTVRVWDLKKATTEPSAEPDEPFIGYLGDVTASINQDIKEYGRRRTVIPTSDLVASFYTKKTPVFKVKFSRSNLALAGGAFRP", "length": 798 }, "evidence": [ { "id": "F1S845", "url": "https://omabrowser.org/oma/group/F1S845/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q15542-1", "protein_name": "Transcription initiation factor TFIID subunit 5", "gene_name": "TAF5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGPNGGGGNVAASSSTGGDGGTPKPTVAVSAAAPAGAAPVPAAAPDAGAPHDRQTLLAVLQFLRQSKLREAEEALRREAGLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAAPDPPGTGASGATVVSGSASGPAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSPQ", "length": 800 }, "evidence": [ { "id": "F1S845", "url": "https://omabrowser.org/oma/group/F1S845/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54KH7-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSTPPQQPNQSQPTQSPPIITTPQTTTTTISSPIAQTTIPASGVGSSSANAVTSTPSPTTTTSTAPSTPTPTPTPTPNPNTTSSISTSTPTPTTTTTTILTPPLPQNTTTPITAVPSSASAIPITATTTISPNTSSNITALPTTPTTPNITPTTTAATTTTTTTPTTSSSSSTTNAPTSNEVKSAQTKDKYDLAVLNYLRKKGYTNAEAILKQEIFNSSQSMSSPISPSDDEATNTTTTNQTNINTVTDNLGSSDDQELAQYLHMYNSSNKGDTSNPQNYLEQYKKLGNWIHSSLDIYKNELLSILYPVFVHSYIDLITKGYPQQARELMEKIGPDHEEYFGDDLKLLRGISNTDHLKENELVDLFRNNRWNIKMCAYSFELLMSFLHQSNFILLLGLINQYIHINVSNLRPGFIDDEQYSISFQSEKDAGDLNSTPINYHAFKPEFEDDVLVQQKEKQQLEQGRILPLTDPNAPLPPVVAPPPPPPPTSGYIPKLKKKDKKKKEVKDERMSKIESNVPIPNLTERFENELMEDFTKCVSLSSSHLPSICFYTIFNTYQGLNTTDISKDAQLVAGGFSDSSVKIWNLKEMKEQRLQQQQQQQQQQQQQQNSNQNGYFENGNFASSASSASSAMNGSGNNNENNKSTTANNNLNSGSSSSSNKLQKQQKESEFKTFLGHSGPVYGCSFSPDSQYLLSCSEDTTARLWSMETMSNLVCYKGHNFPVWDVSFSPFGFYFATASHDRTARLWTTNHISPLRIFTGHLSDCNTVRFHPNINYLATGSNDKSARLWEIQTGKCVRIFMGHRAPIYTVAFSPDGRLLATAGEDTSVILWDLSTGKKVKKMDGHTKCVYSLDFSCDGSILASGSSDCTVRLWDVKKAFNSSLSTQPSSLINDESRKRKTLKSKLFSDELLETYPTKQTPVYNVCFSRRNLLLASGAFNTLTAFDKF", "length": 948 }, "evidence": [ { "id": "F1S845", "url": "https://omabrowser.org/oma/group/F1S845/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q6S7B0-1", "protein_name": "Transcription initiation factor TFIID subunit 5", "gene_name": "TAF5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDPEQINEFVVGYLKKKGFSSAAKDLESYHHQNNNGSSFTSVDYHNDPELTKLIRSFSQQEDDPTRYREGYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARAFFNSFRKDHEMVHLRDLQKLEGVLSPSHLEEMEFARSLRKSKVNIKFCQYSYELLLQYLHSTVSTLMLGIINEHINFQVYSGQPTSSSDDIEAVTIVGSFQDTANHINQKEIQWGLLEDSLEDRLEKTGGLLSDSEKGQGESKDGDADDSKKRSTEIGKQGSSLKKLKKDKAGNATAKVARLETITVSPAPRVKPELALPVMSTDVEQSILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCSSISHDGSLVAGGFSDSSIKVWDMAKIGQAGSGALQAENDSSDQSIGPNGRRSYTLLLGHSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFSRRNLLFAAGAISKPAN", "length": 669 }, "evidence": [ { "id": "F1S845", "url": "https://omabrowser.org/oma/group/F1S845/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8C092-1", "protein_name": "Transcription initiation factor TFIID subunit 5", "gene_name": "Taf5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTPNNGPNGGGGGNVAVAAAAGGDGGTPKPGVAVSAAAPAGAAPVPAAPAEAGAPHDRQTLLAVLQFLRQSNLREAEEALRREARLLEEAVAGSGAPGELDGAGAEAASALLSRVTASVPGSAAPEPPGTGASVTSVFSGSASGPAAPGKVASVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRIYRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAVKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSPQ", "length": 801 }, "evidence": [ { "id": "F1S845", "url": "https://omabrowser.org/oma/group/F1S845/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "positive regulation of transcription initiation by RNA polymerase II", "id": "GO:0060261", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060261", "evidence": [ { "database": "UniProtKB", "id": "F1S845", "url": "https://www.uniprot.org/uniprotkb/F1S845" } ], "pmid": "" }, { "name": "transcription initiation at RNA polymerase II promoter", "id": "GO:0006367", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006367", "evidence": [ { "database": "UniProtKB", "id": "F1S845", "url": "https://www.uniprot.org/uniprotkb/F1S845" } ], "pmid": "" }, { "name": "mRNA transcription by RNA polymerase II", "id": "GO:0042789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042789", "evidence": [ { "database": "UniProtKB", "id": "F1S845", "url": "https://www.uniprot.org/uniprotkb/F1S845" } ], "pmid": "" }, { "name": "RNA polymerase II preinitiation complex assembly", "id": "GO:0051123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051123", "evidence": [ { "database": "UniProtKB", "id": "F1S845", "url": "https://www.uniprot.org/uniprotkb/F1S845" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "transcription factor TFTC complex", "id": "GO:0033276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033276", "evidence": [ { "database": "UniProtKB", "id": "F1S845", "url": "https://www.uniprot.org/uniprotkb/F1S845" } ], "pmid": "" }, { "name": "transcription factor TFIID complex", "id": "GO:0005669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005669", "evidence": [ { "database": "UniProtKB", "id": "F1S845", "url": "https://www.uniprot.org/uniprotkb/F1S845" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1S845", "url": "https://www.uniprot.org/uniprotkb/F1S845" } ], "pmid": "" }, { "name": "translation initiation factor activity", "id": "GO:0003743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003743", "evidence": [ { "database": "UniProtKB", "id": "F1S845", "url": "https://www.uniprot.org/uniprotkb/F1S845" } ], "pmid": "" }, { "name": "RNA polymerase II general transcription initiation factor activity", "id": "GO:0016251", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016251", "evidence": [ { "database": "UniProtKB", "id": "F1S845", "url": "https://www.uniprot.org/uniprotkb/F1S845" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 368, "end_pos": 370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 631, "end_pos": 633, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S845", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S845" }, { "id": "PF04494", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04494" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TFIID subunit TAF5 NTD2", "eco_id": "ECO_0000259", "start_pos": 209, "end_pos": 337, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 294, "end_pos": 296 }, { "start_pos": 368, "end_pos": 370 }, { "start_pos": 631, "end_pos": 633 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S847-1", "uniprot_ac": "F1S847", "uniprot_id": "F1S847_PIG", "mass": { "chemical_mass": 55392.0, "monoisotopic_mass": 55392.0 }, "refseq": { "ac": "XP_001929355", "name": "alpha-internexin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929355" }, "gene_names": [ { "name": "INA", "type": "recommended", "evidence": [ { "id": "F1S847", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S847" } ] }, { "name": "INA", "type": "synonym", "evidence": [ { "id": "XP_001929355", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929355" } ] } ], "protein_names": [ { "name": "Internexin neuronal intermediate filament protein alpha", "type": "synonym", "evidence": [ { "id": "F1S847", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S847/entry#names_and_taxonomy" } ] }, { "name": "alpha-internexin", "type": "synonym", "evidence": [ { "id": "XP_001929355", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929355" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S847", "url": "https://www.uniprot.org/uniprotkb/F1S847" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "INA", "url": "https://www.uniprot.org/uniprotkb/F1S847", "locus": { "chromosome": "14", "start_pos": 114240558, "end_pos": 114227993, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010595", "url": "https://www.ensembl.org/id/ENSSSCG00000010595" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010595", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010595", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153400", "url": "https://www.ncbi.nlm.nih.gov/gene/100153400", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050405", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050405", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153400", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153400", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CASSYRK", "url": "https://omabrowser.org/oma/group/CASSYRK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S847", "url": "https://www.orthodb.org/?gene=F1S847", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45652", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45652", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45652:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45652:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04732", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04732", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001929355", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929355", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S847", "url": "https://www.uniprot.org/uniprotkb/F1S847", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S847-1", "url": "https://www.uniprot.org/uniprotkb/F1S847-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSFGSEHYLCTASSYRKVFGDGSRLSSRLSGAGGAGSFRSQSLSRCNVASSAACSSASSLGLGLAYRRSPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRHAEPSRVGELFQRELRELRAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEVDVAVAKPDLSSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVASYQDNIGQLENDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLNPPPNPSYLLPPRILSSTTSKVSAAGLSLKKEEEEEEASKVASKKTSQIGESFEEILEETVISTKKTEKSNIEESTISSQKI", "length": 499, "header": "tr|F1S847-1|F1S847_PIG Isoform 1 of Internexin neuronal intermediate filament protein alpha OS=Sus scrofa OX=9823 GN=INA PE=1 SV=1 CANONICAL=F1S847-1" }, "isoforms": [ { "isoform_ac": "F1S847-1", "url": "https://www.uniprot.org/uniprotkb/F1S847/entry#F1S847-1", "sequence": { "sequence": "MSFGSEHYLCTASSYRKVFGDGSRLSSRLSGAGGAGSFRSQSLSRCNVASSAACSSASSLGLGLAYRRSPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRHAEPSRVGELFQRELRELRAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEVDVAVAKPDLSSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVASYQDNIGQLENDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLNPPPNPSYLLPPRILSSTTSKVSAAGLSLKKEEEEEEASKVASKKTSQIGESFEEILEETVISTKKTEKSNIEESTISSQKI", "length": 499, "header": "tr|F1S847-1|F1S847_PIG Isoform 1 of Internexin neuronal intermediate filament protein alpha OS=Sus scrofa OX=9823 GN=INA PE=1 SV=1 CANONICAL=F1S847-1" }, "locus": { "chromosome": "14", "start_pos": 114238843, "end_pos": 114228084, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011589.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011589.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011287.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011287.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S847", "url": "https://www.uniprot.org/uniprotkb/F1S847" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153400", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153400", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1Q8F1-1", "protein_name": "Internexin neuronal intermediate filament protein, alpha b", "gene_name": "inab", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSYGSDIYSASSYRKIFGDSTRFSASPSRLSSSRSGFKSQSVNRPNIPSSYKRSTRSGFPSSSLDSFDFTQSTVLNNEFKIIRTNEKEQMQGLNDRFAMFIEKVRNLEQHNKVLETELVTLRQRQTEPSRLAELYQQEIRELRSQLEELNAEKNQMMFERDSIEEDLQKLHEKFEEEMRMREEAEQTLRAFKKDVDNASMVRLDLEKKVESLLDEINFLRKVHEEEVAELMNMIQASQVSVEMEVAKPDLTSALKDIRGQYEAMASKNLQSAEEWYKSKFADLSEQANKSNEVIRASREELNEFRRQLQSKTIEIESLRGTNESLERQIHEMEDRHNAEIMGYQDSIGELENDLRTTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRISTGITYPTPASVSSYSYQSRLYSSTSMSSKKEVKDDDDKQQSGKPGKGSSQSDDSKKNDKIDSGDLNSTNQKN", "length": 469 }, "evidence": [ { "id": "F1S847", "url": "https://omabrowser.org/oma/group/F1S847/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P23565-1", "protein_name": "Alpha-internexin", "gene_name": "Ina", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSFGSEHYLCSASSYRKVFGDGSRLSARLSGPGASGSFRSQSLSRSNVASTAACSSASSLGLGLAYRRLPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRHAEPSRVGELFQRELRELRAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVAGYQDSIGQLESDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLNPLPNPSYLLPPRILSSTTSKVSSAGLSLKKEEEEEEEEEEGASKEVTKKTSKVGESFEETLEETVVSTKKTEKSTIEEITTSSSQKM", "length": 505 }, "evidence": [ { "id": "F1S847", "url": "https://omabrowser.org/oma/group/F1S847/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P46660-1", "protein_name": "Alpha-internexin", "gene_name": "Ina", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSFGSEHYLCSASSYRKVFGDSSRLSARLSGPGGSGSFRSQSLSRSNVASTAACSSASSLGLGLAYRRLPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRHAEPSRVGELFQRELRELRAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVAGYQDSIGQLESDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTGGLSISGLNPLPNPSYLLPPRILSSTASKVSSAGLSLKKEEEEEEEEASKEVSKKTSKVGEGFEETLGEAVISTKKTGKSATEESTSSSQKM", "length": 501 }, "evidence": [ { "id": "F1S847", "url": "https://omabrowser.org/oma/group/F1S847/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q08DH7-1", "protein_name": "Alpha-internexin", "gene_name": "INA", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSFGSEHYLCASSSYRKVFGDGSRLSSRLSGAGGSGSFRSQSLSRSNVASSAACSSASSLGLGLAYRRSPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRHAEPSRVGELFQRELRDLRAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEVDVAVAKPDLSSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVASYQDNIGQLENDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLNPLPNPSYLLPPRILSSTTSKGSATGLSLKKEEEEEEASKIASKKTSQIGESFEEILEETVISTKKTEKSNIEETTISSQKI", "length": 499 }, "evidence": [ { "id": "F1S847", "url": "https://omabrowser.org/oma/group/F1S847/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q16352-1", "protein_name": "Alpha-internexin", "gene_name": "INA", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSFGSEHYLCSSSSYRKVFGDGSRLSARLSGAGGAGGFRSQSLSRSNVASSAACSSASSLGLGLAYRRPPASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRHAEPSRVGELFQRELRDLRAQLEEASSARSQALLERDGLAEEVQRLRARCEEESRGREGAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEVDVTVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVAGYQDSIGQLENDLRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLNPLPNPSYLLPPRILSATTSKVSSTGLSLKKEEEEEEASKVASKKTSQIGESFEEILEETVISTKKTEKSNIEETTISSQKI", "length": 499 }, "evidence": [ { "id": "F1S847", "url": "https://omabrowser.org/oma/group/F1S847/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "intermediate filament", "id": "GO:0005882", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005882", "evidence": [ { "database": "UniProtKB", "id": "F1S847", "url": "https://www.uniprot.org/uniprotkb/F1S847" } ], "pmid": "" }, { "name": "cytoplasmic ribonucleoprotein granule", "id": "GO:0036464", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036464", "evidence": [ { "database": "UniProtKB", "id": "F1S847", "url": "https://www.uniprot.org/uniprotkb/F1S847" } ], "pmid": "" }, { "name": "neurofilament", "id": "GO:0005883", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005883", "evidence": [ { "database": "UniProtKB", "id": "F1S847", "url": "https://www.uniprot.org/uniprotkb/F1S847" } ], "pmid": "" }, { "name": "postsynaptic intermediate filament cytoskeleton", "id": "GO:0099160", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099160", "evidence": [ { "database": "UniProtKB", "id": "F1S847", "url": "https://www.uniprot.org/uniprotkb/F1S847" } ], "pmid": "" }, { "name": "Schaffer collateral - CA1 synapse", "id": "GO:0098685", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098685", "evidence": [ { "database": "UniProtKB", "id": "F1S847", "url": "https://www.uniprot.org/uniprotkb/F1S847" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intermediate filament organization", "id": "GO:0045109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045109", "evidence": [ { "database": "UniProtKB", "id": "F1S847", "url": "https://www.uniprot.org/uniprotkb/F1S847" } ], "pmid": "" }, { "name": "postsynaptic modulation of chemical synaptic transmission", "id": "GO:0099170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099170", "evidence": [ { "database": "UniProtKB", "id": "F1S847", "url": "https://www.uniprot.org/uniprotkb/F1S847" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of postsynaptic intermediate filament cytoskeleton", "id": "GO:0099184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099184", "evidence": [ { "database": "UniProtKB", "id": "F1S847", "url": "https://www.uniprot.org/uniprotkb/F1S847" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S847", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S847" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 94, "end_pos": 407, "start_aa": "Glu", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 333, "end_pos": 335 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S862-1", "uniprot_ac": "F1S862", "uniprot_id": "F1S862_PIG", "mass": { "chemical_mass": 14294.0, "monoisotopic_mass": 14294.0 }, "refseq": {}, "gene_names": [ { "name": "SRXN1", "type": "recommended", "evidence": [ { "id": "F1S862", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S862" } ] } ], "protein_names": [ { "name": "Sulfiredoxin", "type": "recommended", "evidence": [ { "id": "F1S862", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S862/entry#names_and_taxonomy" } ] }, { "name": "1.8.98.2", "type": "synonym", "evidence": [ { "id": "F1S862", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S862/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Contributes to oxidative stress resistance by reducing cysteine-sulfinic acid formed under exposure to oxidants in the peroxiredoxins PRDX1, PRDX2, PRDX3 and PRDX4. Does not act on PRDX5 or PRDX6. May catalyze the reduction in a multi-step process by acting both as a specific phosphotransferase and a thioltransferase.", "evidence": [ { "database": "UniProtKB", "id": "F1S862", "url": "https://www.uniprot.org/uniprotkb/F1S862#function" }, { "database": "UniProtKB", "id": "ARBA00059800", "url": "https://www.uniprot.org/uniprotkb/ARBA00059800#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S862", "url": "https://www.uniprot.org/uniprotkb/F1S862" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SRXN1", "url": "https://www.uniprot.org/uniprotkb/F1S862", "locus": { "chromosome": "17", "start_pos": 34589300, "end_pos": 34582440, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023298", "url": "https://www.ensembl.org/id/ENSSSCG00000023298" } ] } } ], "crossref": [ { "id": "F1S862", "url": "https://alphafold.ebi.ac.uk/entry/F1S862", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023298", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023298", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16395", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16395", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003115", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003115", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016692", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016692", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036086", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036086", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21348", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21348", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21348:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21348:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02195", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02195", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9818027", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9818027", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "17545", "url": "https://www.rhea-db.org/rhea/17545", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1S862", "url": "https://www.uniprot.org/uniprotkb/F1S862", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S862-1", "url": "https://www.uniprot.org/uniprotkb/F1S862-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLRGGALGRAGMGRGSPEGPGPSGSAQGGSIHSGCIAAVHNVPLSVLIRPLPSVLDPAKVQSLVDTIREDPERVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSDLRVYLGASTPDLQ", "length": 136, "header": "tr|F1S862-1|F1S862_PIG Isoform 1 of Sulfiredoxin OS=Sus scrofa OX=9823 GN=SRXN1 PE=3 SV=3 CANONICAL=F1S862-1" }, "isoforms": [ { "isoform_ac": "F1S862-1", "url": "https://www.uniprot.org/uniprotkb/F1S862/entry#F1S862-1", "sequence": { "sequence": "MGLRGGALGRAGMGRGSPEGPGPSGSAQGGSIHSGCIAAVHNVPLSVLIRPLPSVLDPAKVQSLVDTIREDPERVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSDLRVYLGASTPDLQ", "length": 136, "header": "tr|F1S862-1|F1S862_PIG Isoform 1 of Sulfiredoxin OS=Sus scrofa OX=9823 GN=SRXN1 PE=3 SV=3 CANONICAL=F1S862-1" }, "locus": { "chromosome": "17", "start_pos": 34587232, "end_pos": 34582440, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023746.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023746.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027764.3", "url": "https://www.ensembl.org/id/ENSSSCP00000027764.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S862", "url": "https://www.uniprot.org/uniprotkb/F1S862" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9818027", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9818027", "resource": "Reactome", "description": "NFE2L2 regulating anti-oxidant/detoxification enzymes" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1S862", "url": "https://www.uniprot.org/uniprotkb/F1S862" } ], "pmid": "" }, { "name": "sulfiredoxin activity", "id": "GO:0032542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032542", "evidence": [ { "database": "UniProtKB", "id": "F1S862", "url": "https://www.uniprot.org/uniprotkb/F1S862" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S862", "url": "https://www.uniprot.org/uniprotkb/F1S862" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S862", "url": "https://www.uniprot.org/uniprotkb/F1S862" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cellular response to oxidative stress", "id": "GO:0034599", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034599", "evidence": [ { "database": "UniProtKB", "id": "F1S862", "url": "https://www.uniprot.org/uniprotkb/F1S862" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17545", "name": "", "equation": "S-hydroxy-S-oxy-L-cysteinyl-[peroxiredoxin] + [protein]-dithiol + ATP = S-hydroxy-L-cysteinyl-[peroxiredoxin] + [protein]-disulfide + ADP + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17545", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17545" } ] }, { "id": "R-SSC-9760094", "name": "SRXN1 reduces hyperoxidized PRDX1 dimer", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9760094", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9760094" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S862-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 136, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S862-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S862" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S862", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S862" }, { "id": "SM00470", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00470" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ParB-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 134, "start_aa": "His", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S865-1", "uniprot_ac": "F1S865", "uniprot_id": "F1S865_PIG", "mass": { "chemical_mass": 31454.0, "monoisotopic_mass": 31454.0 }, "refseq": { "ac": "XP_013840665", "name": "protein FAM110A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840665" }, "gene_names": [ { "name": "FAM110A", "type": "recommended", "evidence": [ { "id": "F1S865", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S865" } ] }, { "name": "FAM110A", "type": "synonym", "evidence": [ { "id": "XP_013840665", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840665" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 110 member A", "type": "synonym", "evidence": [ { "id": "F1S865", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S865/entry#names_and_taxonomy" } ] }, { "name": "protein FAM110A", "type": "synonym", "evidence": [ { "id": "XP_013840665", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840665" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S865", "url": "https://www.uniprot.org/uniprotkb/F1S865" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM110A", "url": "https://www.uniprot.org/uniprotkb/F1S865", "locus": { "chromosome": "17", "start_pos": 34425617, "end_pos": 34437721, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007200", "url": "https://www.ensembl.org/id/ENSSSCG00000007200" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007200", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007200", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "106506647", "url": "https://www.ncbi.nlm.nih.gov/gene/106506647", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025739", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025739", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025740", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025740", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025741", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025741", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106506647", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106506647", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GCRPHLD", "url": "https://omabrowser.org/oma/group/GCRPHLD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S865", "url": "https://www.orthodb.org/?gene=F1S865", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14758", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14758", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14758:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14758:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14160", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14160", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14161", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14161", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013840665", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840665", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S865", "url": "https://www.uniprot.org/uniprotkb/F1S865", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S865-1", "url": "https://www.uniprot.org/uniprotkb/F1S865-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPVDTLTPGARDTPAALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKAKYVKSLHVANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRVLPGPGRRPQLDLDILSNLINLCDSPVSPAEASRTPGRVEGACQPPPATPPRPPPSTAAVRRVDVLPLPASPAQPCPSPGTAASSPARPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPSAGPASSEGGCSRRSSATVEERARERVPYGVSVIERNARVIKWLYGLRQARETPAAEG", "length": 295, "header": "tr|F1S865-1|F1S865_PIG Isoform 1 of Family with sequence similarity 110 member A OS=Sus scrofa OX=9823 GN=FAM110A PE=3 SV=1 CANONICAL=F1S865-1" }, "isoforms": [ { "isoform_ac": "F1S865-1", "url": "https://www.uniprot.org/uniprotkb/F1S865/entry#F1S865-1", "sequence": { "sequence": "MPVDTLTPGARDTPAALPFRLRTKVPGYLLRRPADSGARKPSAVERLEADKAKYVKSLHVANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRVLPGPGRRPQLDLDILSNLINLCDSPVSPAEASRTPGRVEGACQPPPATPPRPPPSTAAVRRVDVLPLPASPAQPCPSPGTAASSPARPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPSAGPASSEGGCSRRSSATVEERARERVPYGVSVIERNARVIKWLYGLRQARETPAAEG", "length": 295, "header": "tr|F1S865-1|F1S865_PIG Isoform 1 of Family with sequence similarity 110 member A OS=Sus scrofa OX=9823 GN=FAM110A PE=3 SV=1 CANONICAL=F1S865-1" }, "locus": { "chromosome": "17", "start_pos": 34427082, "end_pos": 34426198, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065575.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065575.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032106.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032106.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 141, "start_aa": "Thr", "end_pos": 141, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr141", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S865", "url": "https://www.uniprot.org/uniprotkb/F1S865" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106506647", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106506647", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M225-1", "protein_name": "Protein FAM110A", "gene_name": "Fam110a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPVDTLSPAAPAAPTLPFRLRTKVPSYLLPRPAVAGARKPSAVERLEADKAKYVKSLHVANTRQEPVQPPLARQPFFSAARGPVLTPSRRALPCPGRRPQLDVDILTSLINLCDSPVSPAEASRTPGRAEGSAHKVPPATPPRPPPSTVAVRRVDVRPLPASPTRLCPSPGNTATSSPGRPPGLQRSKSDLSERFFRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPSAGPCSSEGGCSHRSSATVEERALERVPYGVSVIERNARVIKWLYGLRQARDPPATEG", "length": 295 }, "evidence": [ { "id": "F1S865", "url": "https://omabrowser.org/oma/group/F1S865/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G4XVC3-1", "protein_name": "Family with sequence similarity 110, member A", "gene_name": "Fam110a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVDTLSPGAPTTPALPFRLRTKVPGYLLPRPADGGARKPSAVERLEADKAKYVKSLRVANTRQEPVQPPLARQPLFSPGSRGPVLTPSRRVLPCSGRRPQLDLDILSSLINLCDSPVSPSEANRTPGRPEGSAHKVPPATPPRPPPSTVAVRRVDVRPLPASPARPYPSPGAATTSSPGRPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPSAGPCSSEGGCSRRSSATVEERTLERVPYGVSVIERNARVIKWLYGLRQARDPPTTEG", "length": 296 }, "evidence": [ { "id": "F1S865", "url": "https://omabrowser.org/oma/group/F1S865/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q58DG5-1", "protein_name": "Protein FAM110A", "gene_name": "FAM110A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPVDTLTPGARDTPALPIRLRTKVPGYLLRRPADGGARKPSAVERLEADKAKYVKSLHVANTRQEPVQPLLCKQPLFSPGTRRTVLTPSRRALPGPGCRPQLDLDILSSLINLCDSPVSPAEASRTPGRAEGARQPPLATPPRPPPSIAAVRRVDVLPLPASPIQPCPSPGPAAASSPVRPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPSAGPASSEGGCSRRSSVTVEERARERVPYGVSVIERNARVIKWLYGLRQARETPAAEC", "length": 295 }, "evidence": [ { "id": "F1S865", "url": "https://omabrowser.org/oma/group/F1S865/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8R184-1", "protein_name": "Protein FAM110A", "gene_name": "Fam110a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPVDTLSPGAPATPALPFRLRTKVPGYLLPRPADGGARKPSAVERLEADKAKYVKSLRVANTRQEPVQPPLVRQPLFSPGPRGPVLTPSRRVLPCSGRRPQLDLDILSSLINLCDSPVSPSEASRTPGRPEGSAHKVPPATPPRPPPSTVAVRRVDVRPLPASPARPYPSPGTTTTSSPGRPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPSAGPCSSEGGCSRRSSATVEERSLDRVPYGVSVIERNARVIKWLYGLRQARDPPTTEG", "length": 296 }, "evidence": [ { "id": "F1S865", "url": "https://omabrowser.org/oma/group/F1S865/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BQ89-1", "protein_name": "Protein FAM110A", "gene_name": "FAM110A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPVHTLSPGAPSAPALPCRLRTRVPGYLLRGPADGGARKPSAVERLEADKAKYVKSLHVANTRQEPVQPLLSKQPLFSPETRRTVLTPSRRALPGPCRRPQLDLDILSSLIDLCDSPVSPAEASRTPGRAEGAGRPPPATPPRPPPSTSAVRRVDVRPLPASPARPCPSPGPAAASSPARPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPSAGPGSSEGGCSRRSSVTVEERARERVPYGVSVVERNARVIKWLYGLRQARESPAAEG", "length": 295 }, "evidence": [ { "id": "F1S865", "url": "https://omabrowser.org/oma/group/F1S865/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "F1S865", "url": "https://www.uniprot.org/uniprotkb/F1S865" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S865", "url": "https://www.uniprot.org/uniprotkb/F1S865" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1S865", "url": "https://www.uniprot.org/uniprotkb/F1S865" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S865", "url": "https://www.uniprot.org/uniprotkb/F1S865" } ], "pmid": "" }, { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "F1S865", "url": "https://www.uniprot.org/uniprotkb/F1S865" } ], "pmid": "" }, { "name": "spindle microtubule", "id": "GO:0005876", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005876", "evidence": [ { "database": "UniProtKB", "id": "F1S865", "url": "https://www.uniprot.org/uniprotkb/F1S865" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitotic spindle organization", "id": "GO:0007052", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007052", "evidence": [ { "database": "UniProtKB", "id": "F1S865", "url": "https://www.uniprot.org/uniprotkb/F1S865" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S865", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S865" }, { "id": "PF14160", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14160" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Centrosome-associated FAM110 C-terminal", "eco_id": "ECO_0000259", "start_pos": 182, "end_pos": 287, "start_aa": "Pro", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1S865", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S865" }, { "id": "PF14161", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14161" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Centrosome-associated FAM110 N-terminal", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 96, "start_aa": "Pro", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 141 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S866-1", "uniprot_ac": "F1S866", "uniprot_id": "F1S866_PIG", "mass": { "chemical_mass": 50631.0, "monoisotopic_mass": 50631.0 }, "refseq": { "ac": "XP_020933193", "name": "solute carrier family 52, riboflavin transporter, member 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933193" }, "gene_names": [ { "name": "SLC52A3", "type": "recommended", "evidence": [ { "id": "F1S866", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S866" } ] }, { "name": "SLC52A3", "type": "synonym", "evidence": [ { "id": "XP_020933193", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933193" } ] } ], "protein_names": [ { "name": "Riboflavin transporter", "type": "recommended", "evidence": [ { "id": "F1S866", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S866/entry#names_and_taxonomy" } ] }, { "name": "solute carrier family 52, riboflavin transporter, member 3", "type": "synonym", "evidence": [ { "id": "XP_020933193", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933193" } ] } ], "function": [ { "annotation": "Plasma membrane transporter mediating the uptake by cells of the water soluble vitamin B2/riboflavin that plays a key role in biochemical oxidation-reduction reactions of the carbohydrate, lipid, and amino acid metabolism.", "evidence": [ { "database": "UniProtKB", "id": "F1S866", "url": "https://www.uniprot.org/uniprotkb/F1S866#function" }, { "database": "UniProtKB", "id": "RU368035", "url": "https://www.uniprot.org/uniprotkb/RU368035#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S866", "url": "https://www.uniprot.org/uniprotkb/F1S866" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC52A3", "url": "https://www.uniprot.org/uniprotkb/F1S866", "locus": { "chromosome": "17", "start_pos": 34481026, "end_pos": 34459359, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007199", "url": "https://www.ensembl.org/id/ENSSSCG00000007199" } ] } } ], "crossref": [ { "id": "F1S866", "url": "https://alphafold.ebi.ac.uk/entry/F1S866", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007199", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007199", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516303", "url": "https://www.ncbi.nlm.nih.gov/gene/100516303", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009357", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516303", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516303", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CGAAAQM", "url": "https://omabrowser.org/oma/group/CGAAAQM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S866", "url": "https://www.orthodb.org/?gene=F1S866", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12929", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12929", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12929:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12929:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06237", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06237", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-196843", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196843", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020933193", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933193", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "35015", "url": "https://www.rhea-db.org/rhea/35015", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1S866", "url": "https://www.uniprot.org/uniprotkb/F1S866", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S866-1", "url": "https://www.uniprot.org/uniprotkb/F1S866-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFLTHLLVCTFGMGSWVAINGLWVELPLLVTELPEGWYLPSYLTVVIQLANIGPLLITLLHHFRPGCLSEVPIIFTVLGVGTVACTLFAFLWNVTSWVLGGHHSIAFLVLTFFLALVDCTSSVTFLPFMSRLPTHYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTETSGTTQNPETTRAMDTSQGAGSTLVSELAGTAAQVVHLESRYLPAHFSPLVFFLLLSFMMACCLVAFFFLQHQHKHWEASTEDLLASQITLQPIRPHKEKDLGPPGPEDSGKGQEPPEEKTAPCHPARLTFIYLLVAFVNALTNGVLPSVQTYSCLSYGPVAYHLSATLSSMANPLACFLSMFLPNRSLPFLGVLAVLGTGFGAYNMAMAVMSPCPLMQGHWGGEVLIVVSWVLFIGCLSYVKVMLGVILRDLSRSALLWCGAAVQLGSLLGAVVMFPLVNVFRLFSSADFCSLQCSA", "length": 469, "header": "tr|F1S866-1|F1S866_PIG Isoform 1 of Riboflavin transporter OS=Sus scrofa OX=9823 GN=SLC52A3 PE=3 SV=3 CANONICAL=F1S866-1" }, "isoforms": [ { "isoform_ac": "F1S866-1", "url": "https://www.uniprot.org/uniprotkb/F1S866/entry#F1S866-1", "sequence": { "sequence": "MAFLTHLLVCTFGMGSWVAINGLWVELPLLVTELPEGWYLPSYLTVVIQLANIGPLLITLLHHFRPGCLSEVPIIFTVLGVGTVACTLFAFLWNVTSWVLGGHHSIAFLVLTFFLALVDCTSSVTFLPFMSRLPTHYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTETSGTTQNPETTRAMDTSQGAGSTLVSELAGTAAQVVHLESRYLPAHFSPLVFFLLLSFMMACCLVAFFFLQHQHKHWEASTEDLLASQITLQPIRPHKEKDLGPPGPEDSGKGQEPPEEKTAPCHPARLTFIYLLVAFVNALTNGVLPSVQTYSCLSYGPVAYHLSATLSSMANPLACFLSMFLPNRSLPFLGVLAVLGTGFGAYNMAMAVMSPCPLMQGHWGGEVLIVVSWVLFIGCLSYVKVMLGVILRDLSRSALLWCGAAVQLGSLLGAVVMFPLVNVFRLFSSADFCSLQCSA", "length": 469, "header": "tr|F1S866-1|F1S866_PIG Isoform 1 of Riboflavin transporter OS=Sus scrofa OX=9823 GN=SLC52A3 PE=3 SV=3 CANONICAL=F1S866-1" }, "locus": { "chromosome": "17", "start_pos": 34476664, "end_pos": 34470133, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048715.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048715.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042070.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042070.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S866", "url": "https://www.uniprot.org/uniprotkb/F1S866" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516303", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516303", "resource": "KEGG Pathway" }, { "id": "R-SSC-196843", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196843", "resource": "Reactome", "description": "Vitamin B2 (riboflavin) metabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YLB1-1", "protein_name": "Riboflavin transporter", "gene_name": "SLC52A3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSLLTHLLACAFGMGSWVAINGLWVELPLLVTVLPEQWDLPSYITIIIQMANVGPLFVTLMHRFWPGSLKEVVVIYVVVSVGIVACLLLAFLWDYTSPIVGTTHSTAFLILTFFLALVDCTSSVTFLPFMMQLQAQYLTTFFIGEGLSGLIPALIALGQGSGISSCANVSQMVNITSDNETMEGTIFRMETRYLPARFSTLIFFLLMTAMMVACLVAFFFLTRQPKVWELSQQQLCPSTIILNSFDQILEDDGGTGRGEGYSCPKSTKRPMETHPEKVSYSVAKLAFIYLLITWVSSLTNGVLPSVQSYSCLPYGNTAYHLSATLSSMANPLACIVAMVLPSRSLALLGTLSLAGTGFGAYNMAIAVMSPCPLLQHSQWGDAIIILSWVLFTGTLSYVKVMAGVILRSRSHSALVWYGALEQLGSLLGALLMFPLVNIYGFFQSADYCSLQCPV", "length": 454 }, "evidence": [ { "id": "F1S866", "url": "https://omabrowser.org/oma/group/F1S866/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3I8Z6-1", "protein_name": "Riboflavin transporter", "gene_name": "Slc52a3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MALLTHLLVCIFGMGSWVAINGLWVELPLLVTELPEGWYLPSYLTVVIQLANIGPLLVTLLHRFQPGCLSEVPVIFLILCIGTAACVLLALLWNTTSWIQGGHHSVAFIVLTFFLALVDCTSSVTFLPFMSQLPTYYLTTFFIGEGLSGLVPALVALAQGSGITTCINATETPGTTLSPVTTVESHITQTAHSPSQSPLTWHLESRYLAPRFSPLLFFLLLSFLMGCCLVAFFILQRQPWGRQGSIEDLLHSQVTLHSIRPRDAEDASSLGAPVTSPGKGSVEVSVASLRPAQLTFIYSVVAFVNALTNGVLPSVQTYSCLPYGPVAYHLSATLSSVASPLACFLPIFLPNRSLLFLGLLTVLGTSFGAYNMAMAAMSPCPILQGHWGGEVLIVLSWVLFAACLSYVKVMLGVILRDRSRSALLWCGAAVQLGSLIGALLMFPLVNVLRLFSSADYCSLDCSV", "length": 463 }, "evidence": [ { "id": "F1S866", "url": "https://omabrowser.org/oma/group/F1S866/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q4FZU9-1", "protein_name": "Solute carrier family 52, riboflavin transporter, member 3", "gene_name": "Slc52a3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAFLTHLLVCVFGMGSWVAINGLWVELPLLVTKLPEGWYLPSYLTVVIQLANTGPLLVTLMHRFRPGCLSEVPVIFLILCVGTTACILLAFLWSMTSWIQGRQHSVAFIVLTFFLALVDCTSSVTFLPFMSQLPTYYLTTFFIGEGLSGLLPALVALVQGSGITTCVNVTETPGTTLNPVTTMETSITQRTLSPSLTPLTWHLESRYLAPRFSPLLFFLLLSFLMGCCLVAFFLLQRQPWGRQGSIEDLLHSQVTLHSIKPRDTEDTGSVGAPVSSPGKGSVEVSVASLRPAQLAFIYSVVAFVNALTNGVLPSVQTYSCLPYGPVAYHLSATLSSVASPLACFLPIFLPNRSLLFLGVLTVLGTGFGTYNMAMAAMSPCPILQGHWGGEVLIVLSWMLFVACLSYVKVMLGVILRDRSRSALLWCGAAVQLGSLIGALLMFPLVNVLKLFSSADYCSLDCSA", "length": 463 }, "evidence": [ { "id": "F1S866", "url": "https://omabrowser.org/oma/group/F1S866/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5E9R1-1", "protein_name": "Solute carrier family 52, riboflavin transporter, member 3", "gene_name": "SLC52A3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAFLIHLLVCTFGMGSWVAINGLWVELPLLVTELPEGWYLPSYLTVIIQLANVGPLLVTLLHHFRPGCLSEVAVVFTVLGVGTIACTLFAFLWNVTSWVLGSRHSIAFLVLTFFLALVDCTSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEISATTLSPETTRNMDSPQGASSTLVSKLAGTAPSGIHLESRYLPANFSPLVFFLLLSFMMACCFISFFFLQRQPKRWEASIEDLLTSQVTLNSIRPQEGKDLGPPEESGKAQDPPEEKTAPQHLAHLTFIYVLVAFVNALTNGVLPSVQTYSCLSYGPVAYHLSATLSSMASPLTCFLSIFLPNRSLPFLGVLAVLGTSFGAYNMAMAVMSPCPFMQGHWGGEVLIVVSWVLFTGCLSYVKVMLGVILRDHSRSALLWCGAAVQLGSLLGAVVMFPLVNVLRLFSSADFCSLQCSA", "length": 467 }, "evidence": [ { "id": "F1S866", "url": "https://omabrowser.org/oma/group/F1S866/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9D6X5-1", "protein_name": "Solute carrier family 52, riboflavin transporter, member 3", "gene_name": "Slc52a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFLTHLLVCVFGMGSWVAINGLWVELPLLVTELPEAWYLPSYLTVVIQLANIGPLLVTLMHRFRPGCLSEVPVIFLILCVGTAACILLAFLWNVTSWIQGGQHSVAFIVLTFFLALVDCTSSVTFLPFMSQLPTYYLTTFFIGEGLSGLLPALVALVQGSGITTCVNVTETPGTTLNTMETPITQGNLSPSLPSPSWHQESRYLAPRFSPLLFFLLLSFLTGCCLVAFFLLQRQPWGRQGSIEDLLHSQVTLHSIRPRDTEDTSSLGAPVSSPGKGSVEASVASLRPAQLAFIYSVVAFVNALTNGVLPSVQTYSCLPYGPVAYHLSATLSSVASPLACFLPIFLPNRSLLFLGVLTVLGTGFGAYNMAMAAMSPCPVLQGHWGGEVLIVLSWVLFAACLSYVKVMLGVILRDRSRSALLWCGAAVQLGSLIGALLMFPLVNVLKLFSSADYCSLDCSV", "length": 460 }, "evidence": [ { "id": "F1S866", "url": "https://omabrowser.org/oma/group/F1S866/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NQ40-1", "protein_name": "Solute carrier family 52, riboflavin transporter, member 3", "gene_name": "SLC52A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANIGPLLVTLLHHFRPSCLSEVPIIFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLTFFLALVDCTSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEISDSVPSPVPTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMACCLVAFFVLQRQPRCWEASVEDLLNDQVTLHSIRPREENDLGPAGTVDSSQGQGYLEEKAAPCCPAHLAFIYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVANPLASLVSMFLPNRSLLFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVLFSGCLSYVKVMLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNLHCPA", "length": 469 }, "evidence": [ { "id": "F1S866", "url": "https://omabrowser.org/oma/group/F1S866/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S866", "url": "https://www.uniprot.org/uniprotkb/F1S866" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "sensory perception of sound", "id": "GO:0007605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007605", "evidence": [ { "database": "UniProtKB", "id": "F1S866", "url": "https://www.uniprot.org/uniprotkb/F1S866" } ], "pmid": "" }, { "name": "riboflavin transport", "id": "GO:0032218", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032218", "evidence": [ { "database": "UniProtKB", "id": "F1S866", "url": "https://www.uniprot.org/uniprotkb/F1S866" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "riboflavin transmembrane transporter activity", "id": "GO:0032217", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032217", "evidence": [ { "database": "UniProtKB", "id": "F1S866", "url": "https://www.uniprot.org/uniprotkb/F1S866" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 357, "end_pos": 359, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "35015", "name": "", "equation": "riboflavin(in) = riboflavin(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "35015", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/35015" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S866-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 469, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S866-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S866" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 168, "end_pos": 170 }, { "start_pos": 357, "end_pos": 359 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S890-1", "uniprot_ac": "F1S890", "uniprot_id": "F1S890_PIG", "mass": { "chemical_mass": 59202.0, "monoisotopic_mass": 59202.0 }, "refseq": { "ac": "XP_005672850", "name": "serine/threonine-protein kinase 35", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672850" }, "gene_names": [ { "name": "STK35", "type": "recommended", "evidence": [ { "id": "F1S890", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S890" } ] }, { "name": "STK35", "type": "synonym", "evidence": [ { "id": "XP_005672850", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672850" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein kinase 35", "type": "recommended", "evidence": [ { "id": "F1S890", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S890/entry#names_and_taxonomy" } ] }, { "name": "2.7.11.1", "type": "synonym", "evidence": [ { "id": "F1S890", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S890/entry#names_and_taxonomy" } ] }, { "name": "Serine/threonine-protein kinase 35 L1", "type": "synonym", "evidence": [ { "id": "F1S890", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S890/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein kinase 35", "type": "synonym", "evidence": [ { "id": "XP_005672850", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672850" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S890", "url": "https://www.uniprot.org/uniprotkb/F1S890" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STK35", "url": "https://www.uniprot.org/uniprotkb/F1S890", "locus": { "chromosome": "17", "start_pos": 33367349, "end_pos": 33412281, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007179", "url": "https://www.ensembl.org/id/ENSSSCG00000007179" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007179", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007179", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13977", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13977", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524534", "url": "https://www.ncbi.nlm.nih.gov/gene/100524534", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050339", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050339", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524534", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524534", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HDMLAVN", "url": "https://omabrowser.org/oma/group/HDMLAVN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S890", "url": "https://www.orthodb.org/?gene=F1S890", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11042", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11042", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11042:SF59", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11042:SF59", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005672850", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672850", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": "https://www.rhea-db.org/rhea/46608", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1S890", "url": "https://www.uniprot.org/uniprotkb/F1S890", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S890-1", "url": "https://www.uniprot.org/uniprotkb/F1S890-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGHQEPPLARVRAGREAYIKGLRKGLSWREHVESRGSPYAQFSPESAAAITRAAASSIARSARANASRAAPYRRQPWPGADHPQPGALEGKRAARKWKGAGQVTIQGPDPPRPGAGRRDEAGGARAAPLLLPPPLAAMETGEEDGARRGTQSPERKRRSPVPRALSAKLRPAAAAQAMDPVAVEAPGEAYLARRRPEGGGGSARPRYSLLAEIGRGSYGVVYEAVAGRSGARVAVKKIRCDAPENVELALAEFWALTSLKRRHQNVVQFEECVLQRNGLAQRMSHGNKNSQLYLRLVETSLKGERILGYAEEPCYLWFVMEFCEGGDLNHYVLSRRPDPATNKSFMLQLTSAIAFLHKNHIVHRDLKPDNILITERSGTPILKVADFGLSKVCAGLAPRGKEGNQDNKNVNVNKYWLSSACGSDFYMAPEVWEGHYTAKADIFALGIIIWAMIERITFIDSETKKELLGTYIKQGTEIVPVGEALLENPKMELHIPQKRRTSMSEGIKQLLKDMLAANPQDRPDAFELETRMDQVTCAA", "length": 539, "header": "tr|F1S890-1|F1S890_PIG Isoform 1 of Serine/threonine-protein kinase 35 OS=Sus scrofa OX=9823 GN=STK35 PE=4 SV=2 CANONICAL=F1S890-1" }, "isoforms": [ { "isoform_ac": "F1S890-1", "url": "https://www.uniprot.org/uniprotkb/F1S890/entry#F1S890-1", "sequence": { "sequence": "MGHQEPPLARVRAGREAYIKGLRKGLSWREHVESRGSPYAQFSPESAAAITRAAASSIARSARANASRAAPYRRQPWPGADHPQPGALEGKRAARKWKGAGQVTIQGPDPPRPGAGRRDEAGGARAAPLLLPPPLAAMETGEEDGARRGTQSPERKRRSPVPRALSAKLRPAAAAQAMDPVAVEAPGEAYLARRRPEGGGGSARPRYSLLAEIGRGSYGVVYEAVAGRSGARVAVKKIRCDAPENVELALAEFWALTSLKRRHQNVVQFEECVLQRNGLAQRMSHGNKNSQLYLRLVETSLKGERILGYAEEPCYLWFVMEFCEGGDLNHYVLSRRPDPATNKSFMLQLTSAIAFLHKNHIVHRDLKPDNILITERSGTPILKVADFGLSKVCAGLAPRGKEGNQDNKNVNVNKYWLSSACGSDFYMAPEVWEGHYTAKADIFALGIIIWAMIERITFIDSETKKELLGTYIKQGTEIVPVGEALLENPKMELHIPQKRRTSMSEGIKQLLKDMLAANPQDRPDAFELETRMDQVTCAA", "length": 539, "header": "tr|F1S890-1|F1S890_PIG Isoform 1 of Serine/threonine-protein kinase 35 OS=Sus scrofa OX=9823 GN=STK35 PE=4 SV=2 CANONICAL=F1S890-1" }, "locus": { "chromosome": "17", "start_pos": 33412219, "end_pos": 33395851, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007853.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007853.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007642.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007642.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S890", "url": "https://www.uniprot.org/uniprotkb/F1S890" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524534", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524534", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZKU3-1", "protein_name": "Serine/threonine-protein kinase 35", "gene_name": "Stk35", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQVKSGKALAERTRLAKALCTNRGILARSFCWLGVLASDWFRAVAAAGSTSAVERRRSSSLASWGMGHQESPLTKVAAGGAAYIKRLRKVLSWRELEDSHGNLEAEASPGSAAVISGAAPRPATRPTRLPASRPTRLCRQPGLGTDHPPARAPRGNRSARKRNSAGQITIQGTAPPHLRARRRDEAGGARAAPLLLPPPPAAMETGKENGARRRTKSPERKRRSPVQRVLCEKLRPVAEAKDPAMAEVPGEAFLARRRPDGGGGDVPARPRYSLLAEIGRGSYGVVYEAVAGRSGAKVAVKKIRCDAPENVELALAEFWALTSLKRRHQNIVQFEECVLQRNGLAQRMSHGNKNSQLYLRLVETSLKGERILGYAEEPCYLWFVMEYCEGGDLNQYVLSRRPDPATNKSFMLQLTSAIAFLHKNHIVHRDLKPDNILITERSGTPILKVADFGLSKVCAGLAPRGKEGNQDNKDVNVNKYWLSSACGSDFYMAPEVWEGHYTAKADIFALGIIIWAMIERITFIDSETKKELLGTYIKQGTEIVPVGEALLENPKMELHIPQKRRTSMSEGVKQLLKDMLAANPQDRPDAFELETRMDQVTCAA", "length": 604 }, "evidence": [ { "id": "F1S890", "url": "https://omabrowser.org/oma/group/F1S890/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MUU2-1", "protein_name": "Serine/threonine-protein kinase 35", "gene_name": "STK35", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGHQEPPLARLRAGRAAYIKRLRKGLSWREHVESRGSPDAQLSPESTAAVTRAVAGAVARPTRAAASRAAPYPRQPCPGADHPQPGALGGKRAARKWKGAGQVTIQGPALPRPGAGRRDEAGGSRAAPLLLPPPPAAMETGEEDGARRGTQSPERKRRSPVPRALSAKLRPAAAAQAMDPVAAEAPGEAYLARRRPEGGGGSARPRYSLLAEIGRGSYGVVYEAVAGRSGARVAVKKIRCDAPENVELALAEFWALTSLKRRHQNVVQFEECVLQRNGLAQRMSHGNKSSQLYLRLVETSLKGERILGYAEEPCYLWFVMEFCEGGDLNQYVLSRRPDPATNKSFMLQLTSAIAFLHKNHIVHRDLKPDNILITERSGTPILKVADFGLSKVCAGLAPRGKEGNPDNKNVNVNKYWLSSACGSDFYMAPEVWEGHYTAKADIFALGIIIWAMIERITFIDSETKKELLGTYIKQGTEIVPVGEALLENPKMELHIPQKRRTSMSEGIKQLLKDMLAANPQDRPDAFELETRMDQVTCAA", "length": 539 }, "evidence": [ { "id": "F1S890", "url": "https://omabrowser.org/oma/group/F1S890/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q80ZW0-1", "protein_name": "Serine/threonine-protein kinase 35", "gene_name": "Stk35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGHQESPLTRAAAGGAAYIKRLRKVLSWRELGDGHGNLEAEASPGSVAVITRAAPRRATRSARLPASRPTRLCRQARLGTDHPPARAPRGNRFARKRNSAGQITIQGPAPPHLGARRRDEARGARAAPLLLPPPPAAMETGKENGARRGTKSPERKRRSPVQRVLCEKLRPAAQAMDPAGAEVPGEAFLARRRPDGGGGDVPARPRYSLLAEIGRGSYGVVYEAVAGRSGARVAVKKIRCDAPENVELALAEFWALTSLKRRHQNIVQFEECVLQRNGLAQRMSHGNKNSQLYLRLVETSLKGERILGYAEEPCYLWFVMEYCEGGDLNQYVLSRRPDPATNKSFMLQLTSAIAFLHKNHIVHRDLKPDNILITERSGTPILKVADFGLSKVCAGLAPRGKEGNQDNKNVNVNKYWLSSACGSDFYMAPEVWEGHYTAKADIFALGIIIWAMIERITFIDSETKKELLGTYIKQGTEIVPVGEALLENPKMELHIPQKRRTSMSEGVKQLLKDMLAANPQDRPDAFELETRMDQVTCAA", "length": 539 }, "evidence": [ { "id": "F1S890", "url": "https://omabrowser.org/oma/group/F1S890/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TDR2-1", "protein_name": "Serine/threonine-protein kinase 35", "gene_name": "STK35", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGHQESPLARAPAGGAAYVKRLCKGLSWREHVESHGSLGAQASPASAAAAEGSATRRARAATSRAARSRRQPGPGADHPQAGAPGGKRAARKWRCAGQVTIQGPAPPRPRAGRRDEAGGARAAPLLLPPPPAAMETGKDGARRGTQSPERKRRSPVPRAPSTKLRPAAAARAMDPVAAEAPGEAFLARRRPEGGGGSARPRYSLLAEIGRGSYGVVYEAVAGRSGARVAVKKIRCDAPENVELALAEFWALTSLKRRHQNVVQFEECVLQRNGLAQRMSHGNKSSQLYLRLVETSLKGERILGYAEEPCYLWFVMEFCEGGDLNQYVLSRRPDPATNKSFMLQLTSAIAFLHKNHIVHRDLKPDNILITERSGTPILKVADFGLSKVCAGLAPRGKEGNQDNKNVNVNKYWLSSACGSDFYMAPEVWEGHYTAKADIFALGIIIWAMIERITFIDSETKKELLGTYIKQGTEIVPVGEALLENPKMELHIPQKRRTSMSEGIKQLLKDMLAANPQDRPDAFELETRMDQVTCAA", "length": 534 }, "evidence": [ { "id": "F1S890", "url": "https://omabrowser.org/oma/group/F1S890/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein kinase activity", "id": "GO:0004672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004672", "evidence": [ { "database": "UniProtKB", "id": "F1S890", "url": "https://www.uniprot.org/uniprotkb/F1S890" } ], "pmid": "" }, { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "F1S890", "url": "https://www.uniprot.org/uniprotkb/F1S890" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1S890", "url": "https://www.uniprot.org/uniprotkb/F1S890" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S890", "url": "https://www.uniprot.org/uniprotkb/F1S890" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S890", "url": "https://www.uniprot.org/uniprotkb/F1S890" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1S890", "url": "https://www.uniprot.org/uniprotkb/F1S890" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S890", "url": "https://www.uniprot.org/uniprotkb/F1S890" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of G2/M transition of mitotic cell cycle", "id": "GO:0010972", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010972", "evidence": [ { "database": "UniProtKB", "id": "F1S890", "url": "https://www.uniprot.org/uniprotkb/F1S890" } ], "pmid": "" }, { "name": "negative regulation of G2/MI transition of meiotic cell cycle", "id": "GO:0110031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0110031", "evidence": [ { "database": "UniProtKB", "id": "F1S890", "url": "https://www.uniprot.org/uniprotkb/F1S890" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S890", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S890" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 207, "end_pos": 535, "start_aa": "Tyr", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 342, "end_pos": 344 }, { "start_pos": 65, "end_pos": 67 } ] }, 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S898-1", "uniprot_ac": "F1S898", "uniprot_id": "F1S898_PIG", "mass": { "chemical_mass": 102549.0, "monoisotopic_mass": 102549.0 }, "refseq": {}, "gene_names": [ { "name": "TMC2", "type": "recommended", "evidence": [ { "id": "F1S898", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S898" } ] } ], "protein_names": [ { "name": "Transmembrane channel-like protein", "type": "recommended", "evidence": [ { "id": "F1S898", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S898/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S898", "url": "https://www.uniprot.org/uniprotkb/F1S898" } ], "common_name": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23302", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23302:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23302:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S898", "url": "https://www.uniprot.org/uniprotkb/F1S898", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S898-1", "url": "https://www.uniprot.org/uniprotkb/F1S898-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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protein OS=Sus scrofa OX=9823 GN=TMC2 PE=3 SV=4 CANONICAL=F1S898-1" }, "isoforms": [ { "isoform_ac": "F1S898-1", "url": "https://www.uniprot.org/uniprotkb/F1S898/entry#F1S898-1", "sequence": { "sequence": 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"url": "https://www.uniprot.org/uniprotkb/F1S8F8" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1S8F8", "url": "https://www.uniprot.org/uniprotkb/F1S8F8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "reciprocal meiotic recombination", "id": "GO:0007131", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007131", "evidence": [ { "database": "UniProtKB", "id": "F1S8F8", "url": "https://www.uniprot.org/uniprotkb/F1S8F8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "synaptonemal complex", "id": "GO:0000795", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000795", "evidence": [ { "database": "UniProtKB", "id": "F1S8F8", "url": "https://www.uniprot.org/uniprotkb/F1S8F8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 108, "end_pos": 110, "annotation": "n_glycosylation_sequon" }, { "start_pos": 183, "end_pos": 185, "annotation": "n_glycosylation_sequon" }, { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S8F8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 275, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S8F8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S8F8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S8F8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8F8" }, { "id": "PF14634", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14634" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 50, "start_aa": "Cys", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 108, "end_pos": 110 }, { "start_pos": 183, "end_pos": 185 }, { "start_pos": 210, "end_pos": 212 }, { "start_pos": 50, "end_pos": 52 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, 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A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S8J1", "url": "https://www.uniprot.org/uniprotkb/F1S8J1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154303", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154303", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LX88-1", "protein_name": "Olfactory receptor", "gene_name": "Or6s1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"type": "recommended", "evidence": [ { "id": "F1S8K5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8K5" } ] }, { "name": "SUPT16H", "type": "synonym", "evidence": [ { "id": "XP_001929215", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929215" } ] } ], "protein_names": [ { "name": "FACT complex subunit", "type": "recommended", "evidence": [ { "id": "F1S8K5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8K5/entry#names_and_taxonomy" } ] }, { "name": "FACT complex subunit SPT16 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_001929215", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929215" } ] } ], "function": [ { "annotation": "Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. The FACT complex is probably also involved in phosphorylation of 'Ser-392' of p53/TP53 via its association with CK2 (casein kinase II).", "evidence": [ { "database": "UniProtKB", "id": "F1S8K5", "url": "https://www.uniprot.org/uniprotkb/F1S8K5#function" }, { "database": "UniProtKB", "id": "ARBA00053946", "url": "https://www.uniprot.org/uniprotkb/ARBA00053946#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S8K5", "url": "https://www.uniprot.org/uniprotkb/F1S8K5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SUPT16H", "url": "https://www.uniprot.org/uniprotkb/F1S8K5", "locus": { "chromosome": "7", "start_pos": 77814505, "end_pos": 77781316, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022900", "url": "https://www.ensembl.org/id/ENSSSCG00000022900" } ] } } ], "crossref": [ { "id": "ENSSSCG00000022900", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022900", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01091", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01091", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155525", "url": "https://www.ncbi.nlm.nih.gov/gene/100155525", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000994", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000994", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013953", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013953", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029148", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029148", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033825", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033825", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040258", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040258", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056595", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056595", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155525", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155525", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YHINTIP", "url": "https://omabrowser.org/oma/group/YHINTIP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S8K5", "url": "https://www.orthodb.org/?gene=F1S8K5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13980", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13980", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13980:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13980:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00557", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00557", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08512", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08512", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08644", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08644", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14826", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14826", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21091", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21091", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24824", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24824", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-112382", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-112382", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-674695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-674695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6796648", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6796648", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6804756", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75955", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75955", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9943411", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943411", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001929215", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929215", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S8K5", "url": "https://www.uniprot.org/uniprotkb/F1S8K5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8K5-1", "url": "https://www.uniprot.org/uniprotkb/F1S8K5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPGHWESAGFRGRERVAEPGPRVILGTRGGAASVAMAVTLDKDAYYRRVKRLYSNWRKGEDEYANVDAIVVSVGVDEEIVYAKSTALQTWLFGYELTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNENANGAPAITLLIREKNESNKSSFDKMIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLNKEGFDKIDISAVVAYTIAVKEDGELNLMKKAASITSEVFNKFFKERVMEIVDADEKVRHSKLAESVEKAIEEKKYLAGADPSTVEMCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSNLVRTLMVDPSQEVQENYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKKQKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTSVKKKVKNVGIFLKNEDEEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKELAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNPSLMPKEPHIREMKIYIDKKYETVIMPVFGIATPFHIATIKNISMSVEGDYTYLRINFYCPGSALGRNEGNIFPNPEATFVKEITYRASNMKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAEEGDSESEIEDETFNPSEDDYEEEEEDSDEDYSSEAEESDYSKESLGSEEESGKDWDELEEEARKADRESRYEEEEEQSRSMSRKRKASVHSSGRGSNRGSRHSSAPPKKKRK", "length": 1083, "header": "tr|F1S8K5-1|F1S8K5_PIG Isoform 1 of FACT complex subunit OS=Sus scrofa OX=9823 GN=SUPT16H PE=1 SV=2 CANONICAL=F1S8K5-1" }, "isoforms": [ { "isoform_ac": "F1S8K5-1", "url": "https://www.uniprot.org/uniprotkb/F1S8K5/entry#F1S8K5-1", "sequence": { "sequence": "MLPGHWESAGFRGRERVAEPGPRVILGTRGGAASVAMAVTLDKDAYYRRVKRLYSNWRKGEDEYANVDAIVVSVGVDEEIVYAKSTALQTWLFGYELTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNENANGAPAITLLIREKNESNKSSFDKMIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLNKEGFDKIDISAVVAYTIAVKEDGELNLMKKAASITSEVFNKFFKERVMEIVDADEKVRHSKLAESVEKAIEEKKYLAGADPSTVEMCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSNLVRTLMVDPSQEVQENYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKKQKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTSVKKKVKNVGIFLKNEDEEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKELAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNPSLMPKEPHIREMKIYIDKKYETVIMPVFGIATPFHIATIKNISMSVEGDYTYLRINFYCPGSALGRNEGNIFPNPEATFVKEITYRASNMKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAEEGDSESEIEDETFNPSEDDYEEEEEDSDEDYSSEAEESDYSKESLGSEEESGKDWDELEEEARKADRESRYEEEEEQSRSMSRKRKASVHSSGRGSNRGSRHSSAPPKKKRK", "length": 1083, "header": "tr|F1S8K5-1|F1S8K5_PIG Isoform 1 of FACT complex subunit OS=Sus scrofa OX=9823 GN=SUPT16H PE=1 SV=2 CANONICAL=F1S8K5-1" }, "locus": { "chromosome": "7", "start_pos": 77813336, "end_pos": 77781322, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031400.3", "url": "https://www.ensembl.org/id/ENSSSCT00000031400.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022646.2", "url": "https://www.ensembl.org/id/ENSSSCP00000022646.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S8K5", "url": "https://www.uniprot.org/uniprotkb/F1S8K5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155525", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155525", "resource": "KEGG Pathway" }, { "id": "R-SSC-112382", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-112382", "resource": "Reactome", "description": "Formation of RNA Pol II elongation complex" }, { "id": "R-SSC-674695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-674695", "resource": "Reactome", "description": "RNA Polymerase II Pre-transcription Events" }, { "id": "R-SSC-6796648", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6796648", "resource": "Reactome", "description": "TP53 Regulates Transcription of DNA Repair Genes" }, { "id": "R-SSC-6804756", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "resource": "Reactome", "description": "Regulation of TP53 Activity through Phosphorylation" }, { "id": "R-SSC-75955", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75955", "resource": "Reactome", "description": "RNA Polymerase II Transcription Elongation" }, { "id": "R-SSC-9943411", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943411", "resource": "Reactome", "description": "CHD1 and CHD2 subfamily" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M120-1", "protein_name": "FACT complex subunit", "gene_name": "Supt16h", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAVTLDKDAYYRRVKRLYSNWRKGEDEYASIDAIVVSVGVDEEIVYAKSTALQTWLFGYELTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNENANGAPAITLLIREKNESNKSSFDKMIEAIKESKNGKKIGVFSKDKFPGEFMKSWSDCLNKEGFDKVDISAVVAYTIAVKEDGELNLMKKAASITSEVFNKFFKERVMEIVDADEKVRHSKLAESVEKAIEEKKYLAGADPSTVEMCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSNLVRTLMVDPTQEVQENYNFLLQLQEELLKELRHGVKICDVYNSVMDVVKKQKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTSVKKKVKNVGIFLKNEDEEEEEEDKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKELAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNPSLMPKEPHIREMKIYIDKKYETVIMPVFGIATPFHIATIKNISMSVEGDYTYLRINFYCPGSALGRNEGNIFPNPEATFVKEITYRASNMKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAEDGDSESEIEDETFNPSEDDYEEEEEDSDEDYSSEAEESDYSKESLGSEEESGKDWDELEEEARKADRESRYEEEEEQSRSMSRKRKASVHSSGRGSNRGSRHSSAPPKKKRK", "length": 1047 }, "evidence": [ { "id": "F1S8K5", "url": "https://omabrowser.org/oma/group/F1S8K5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BNP8-1", "protein_name": "FACT complex subunit", "gene_name": "SUPT16H", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAVTLDKDAYYRRVKRLYSNWRKGEDEYANVDAIVVSVGVDEEIVYAKSTALQTWLFGYELTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNENANGAPAITLLVREKNESNKSSFDKMIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLNKEGFDKIDISAVVAYTIAVKEDGELNLMKKAASITSEVFNKFFKERVMEIVDADEKVRHSKLAESVEKAIEEKKYLAGADPSTVEMCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSNLVRTLMVDPSQEVQENYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKKQKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTSVKKKVKNVGIFLKNEDEEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKELAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNPSLMPKEPHIREMKIYIDKKYETVIMPVFGIATPFHIATIKNISMSVEGDYTYLRINFYCPGSALGRNEGNIFPNPEATFVKEITYRASNMKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAEEGDSESEIEDETFNPSEEDYEEEEEDSDEDYSSEAEESDYSKESLGSEEESGKDWDELEEEARKADRESRYEEEEEQSRSMSRKRKASVHSSGRGSNRGSRHSSAPPKKKRK", "length": 1047 }, "evidence": [ { "id": "F1S8K5", "url": "https://omabrowser.org/oma/group/F1S8K5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P32558-1", "protein_name": "FACT complex subunit SPT16", "gene_name": "SPT16", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MEELNIDFDVFKKRIELLYSKYNEFEGSPNSLLFVLGSSNAENPYQKTTILHNWLLSYEFPATLIALVPGKVIIITSSAKAKHLQKAIDLFKDPESKITLELWQRNNKEPELNKKLFDDVIALINSAGKTVGIPEKDSYQGKFMTEWNPVWEAAVKENEFNVIDISLGLSKVWEVKDVNEQAFLSVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLKQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNGCILASCGIRYNNYCSNITRTFLIDPSEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYIEKTKPELVPNFTKNIGSLIGLEFRDSNFILNVKNDYRKIQRGDCFNISFGFNNLKDSQSANNYALQLADTVQIPLDETEPPRFLTNYTKAKSQISFYFNNEEEDNNKKKSSPATKVPSKPDRNSKILRTKLRGEARGGAEDAQKEQIRKENQKKLHEKLEKNGLLRFSAADANGPDSEPRQYFKKYESYVRDSQLPTNIRDLRIHVDWKSQTIILPIYGRPVPFHINSYKNGSKNEEGEYTYLRLNFNSPGSSGGISKKVEELPYEESADNQFVRSITLRSKDGDRMSETFKQIADLKKEATKREQERKALADVVQQDKLIENKTGRTKRLDQIFVRPNPDTKRVPSTVFIHENGIRFQSPLRTDSRIDILFSNIKNLIFQSCKGELIVVIHIHLKNPILMGKKKIQDVQFYREASDMSVDETGGGRRGQSRFRRYGDEDELEQEQEERRKRAALDKEFKYFADAIAEASNGLLTVENTFRDLGFQGVPNRSAVFCMPTTDCLVQLIEPPFLVINLEEVEICILERVQFGLKNFDMVFVYKDFNKPVTHINTVPIESLDFLKQWLTDMDIPYTVSTINLNWATIMKSLQDDPYQFFLDGGWNFLATGSDDEASDESEEEVSEYEASEDDVSDESAFSEDEEGSEVDDDISGDESEDYTGDESEEGEDWDELEKKAARADRGANFRD", "length": 1035 }, "evidence": [ { "id": "F1S8K5", "url": "https://omabrowser.org/oma/group/F1S8K5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54S43-1", "protein_name": "FACT complex subunit SPT16", "gene_name": "spt16", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQSTTTTTTTTAAPAVPTGPREATLDAGNFCKRVKILYDSWNSDSNLWKSANSLVLALGQPNESNPYQKVTSLQTWLFGYELKDTIIVFLEKEIYIVSTSKKINLFQKLSETEQVKTELSSIKFNFLTIDKSDKNKSNFEKLIGEATKAGSNIGVIIKETYIGDLALQWEAALNECPLTKVDITPALSSCLLVKDLQEQKNIITSAKITSKVLKSHILPKIETIIDKGERQTHNQLADYAADIFESPEKISSKLTVEHVDYSYVPIIQSGGIYDLRASASSDDNPLHFGTIIVSCGARYKNYCSNIARTYIIDPTSDQKKNYAILLNVQSNVIKAIKPDVTFSSLYEKAIQTIKESSKPELVDHFPKNVGYGIGIEFQESLAVLNATNSRTLKAGMTLNIACGFQKISNPEGKDEKSKTYSLLISDTVLLNDEGKVEVLTDVGKKASDVVYMLGGEDDDDDNDNDPSVKLELPDDVKGITGRTIETKEKSKSVEERRRDHQKMLEQKNLQEAENKIKAMTDPNGKKGTPEVDYTAITKLQPIYSSVGAYPQDIVKNKMYIDPKKETVLFPIFGYMVPFHISTIKNISKSEEYIRVNFNTPTSYTQEQIDAGFVPPQLMYIREVTYKVNDPKVLANNIRLIKELKKKFTTRETEDREKRNLITQEKLILLRGKFPRLPEVHARPTLSGARRTIGILEAHENGIRFNPTSTKDRTPIDVLYKNIKHAIYQQADQESMAVIHFHLHDALMIGKKKTKDVQFYIEISEMSQSLDVSSRFNDEEEEERRERALKEKINNDFKTFIKRVEEIAPEPGLEFDVPYRELGFYGVPNVSTVFIQPSVHCLLSILEPPFFVLTLDDVEIACFERAIRSLKNFDLSFVFKDYNRPPIRISVIPRNYFETVKEWLDSFNIKFYQSERNYNWKRIMDTIKSDVKKFHDDGGWSFLDLEEEEEEEDSGDDDYHSNSDESESSDYISSMSSGSDDDDEDSSEGENWEDLEQKAERDDKMKTFDETNKRKRDEKSVSSSNRPSSSKSGSSSSGGGGGGGGSSRSKSSSSSSKGSSSSSSKSSSSKRK", "length": 1072 }, "evidence": [ { "id": "F1S8K5", "url": "https://omabrowser.org/oma/group/F1S8K5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8IRG6-1", "protein_name": "FACT complex subunit spt16", "gene_name": "dre4", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSSFVLDKEAFVRRVKRLYTEWRAPSIGHDDALRNLDCIMSIVGVEEDVMYSKSMALQLWLLGYELTDTISVFCSDAVYFLTSKKKIEFLKQTQNITEEGFPEINLLVRDRTDKDQGNFEKLIKALQNSKKGKRLGVFAKDAYPGEFSEAWKKSLTASKFEHVDISTIIAYLMCPKDESEINNIRKASLVSMDIFNKYLKDEIMDIIDSDRKVKHNKLSDGCEAAIGEKKYTSGLDPRLLDMAYPPIIQSGGAYSLKFSAVADKNPLHFGVIVCSLGARYKSYCSNISRTFLVNPTEAMQENYTFLVSVQEEILKLLVPGTKLCDVYEKTLDFVKKEKPSMVDNLPKSFGFAMGLEFRENSIVIGPKCQALLKKNMVFNLHVGISNLTNPEATDKEGKNYALFIGDTVLVGEQSPASVMTPSKKKIKNVGIFIKDDSDEEDVDDKKTAKEDQGTEILGRSKRNAVLESKLRNEINTEEKRKEHQRELAQQLNERAKDRLARQGNSKEVEKVRKNTVSYKSISQMPREPEVKELKLYVDKKYETVIMPVFGIQVPFHISTIKNISQSVEGEYTYLRINFFHPGATMGRNEGGLYPQPEATFVKEVTYRSSNVKEHGEVGAPSANLNNAFRLIKEVQKRFKTREAEEREKEDLVKQDTLILSQNKGNPKLKDLYIRPNIVTKRMTGSLEAHSNGFRYISVRGDKVDILYNNIKSAFFQPCDGEMIILLHFHLKYAIMFGKKKHVDVQFYTEVGEITTDLGKHQHMHDRDDLAAEQAERELRHKLKTAFKSFCEKVETMTKSVVEFDTPFRELGFPGAPFRSTVTLQPTSGSLVNLTEWPPFVITLDDVELVHFERVQFHLRNFDMIFVFKEYNKKVAMVNAIPMNMLDHVKEWLNSCDIRYSEGVQSLNWQKIMKTITDDPEGFFEQGGWTFLDPESGSEGENETAESEEDEAYNPTDAESDEESDEDSEYSEASEDSEESDEDLGSDEESGKDWSDLEREAAEEDRNHDYAADDKPRNGKFDSKKHGKSSKHSPSKSSKDKYNSRDKHHSSSSSGNKSSSKDKDRKRSRDDSRDNGHKSKKSRH", "length": 1083 }, "evidence": [ { "id": "F1S8K5", "url": "https://omabrowser.org/oma/group/F1S8K5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q920B9-1", "protein_name": "FACT complex subunit SPT16", "gene_name": "Supt16h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVTLDKDAYYRRVKRLYSNWRKGEDEYASIDAIVVSVGVDEEIVYAKSTALQTWLFGYELTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNENANGAPAITLLVREKNESNKSSFDKMIDAIKESKSGKKIGVFSKDKFPGEFMKSWSDCLNKEGFDKVDISAVVAYTIAVKEDGELNLMKKAASITSEVFNKFFKERVMEIVDADEKVRHSKLAESVEKAIEEKKYLAGADPSTVEMCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSNLVRTLMVDPTQEVQENYNFLLQLQEELLKELRHGVKICDVYNSVMDVVKKQKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATILTSVKKKVKNVGIFLKNEDDEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKELAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNPSLMPKEPHIREMKIYIDKKYETVIMPVFGIATPFHIATIKNISMSVEGDYTYLRINFYCPGSALGRNEGNIFPNPEATFVKEITYRASNMKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDGEMIIVLHFHLKNAVMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAEDGDSESEIEDETFNPSEDDYEEEEEDSDEDYSSEAEESDYSKESLGSEEESGKDWDELEEEARKADRESRYEEEEEQSRSMSRKRKASVHSSGRGSNRGSRHSSAPPKKKRK", "length": 1047 }, "evidence": [ { "id": "F1S8K5", "url": "https://omabrowser.org/oma/group/F1S8K5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y5B9-1", "protein_name": "FACT complex subunit SPT16", "gene_name": "SUPT16H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVTLDKDAYYRRVKRLYSNWRKGEDEYANVDAIVVSVGVDEEIVYAKSTALQTWLFGYELTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNENANGAPAITLLIREKNESNKSSFDKMIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLNKEGFDKIDISAVVAYTIAVKEDGELNLMKKAASITSEVFNKFFKERVMEIVDADEKVRHSKLAESVEKAIEEKKYLAGADPSTVEMCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSNLVRTLMVDPSQEVQENYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKKQKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTSVKKKVKNVGIFLKNEDEEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKELAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNPSLMPKEPHIREMKIYIDKKYETVIMPVFGIATPFHIATIKNISMSVEGDYTYLRINFYCPGSALGRNEGNIFPNPEATFVKEITYRASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAEEGDSESEIEDETFNPSEDDYEEEEEDSDEDYSSEAEESDYSKESLGSEEESGKDWDELEEEARKADRESRYEEEEEQSRSMSRKRKASVHSSGRGSNRGSRHSSAPPKKKRK", "length": 1047 }, "evidence": [ { "id": "F1S8K5", "url": "https://omabrowser.org/oma/group/F1S8K5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "F1S8K5", "url": "https://www.uniprot.org/uniprotkb/F1S8K5" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1S8K5", "url": "https://www.uniprot.org/uniprotkb/F1S8K5" } ], "pmid": "" }, { "name": "DNA replication", "id": "GO:0006260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006260", "evidence": [ { "database": "UniProtKB", "id": "F1S8K5", "url": "https://www.uniprot.org/uniprotkb/F1S8K5" } ], "pmid": "" }, { "name": "nucleosome disassembly", "id": "GO:0006337", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006337", "evidence": [ { "database": "UniProtKB", "id": "F1S8K5", "url": "https://www.uniprot.org/uniprotkb/F1S8K5" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription elongation", "id": "GO:0032784", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032784", "evidence": [ { "database": "UniProtKB", "id": "F1S8K5", "url": "https://www.uniprot.org/uniprotkb/F1S8K5" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription, elongation", "id": "GO:0032786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032786", "evidence": [ { "database": "UniProtKB", "id": "F1S8K5", "url": "https://www.uniprot.org/uniprotkb/F1S8K5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "nucleosome binding", "id": "GO:0031491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031491", "evidence": [ { "database": "UniProtKB", "id": "F1S8K5", "url": "https://www.uniprot.org/uniprotkb/F1S8K5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "FACT complex", "id": "GO:0035101", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035101", "evidence": [ { "database": "UniProtKB", "id": "F1S8K5", "url": "https://www.uniprot.org/uniprotkb/F1S8K5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 147, "end_pos": 149, "annotation": "n_glycosylation_sequon" }, { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 545, "end_pos": 547, "annotation": "n_glycosylation_sequon" }, { "start_pos": 592, "end_pos": 594, "annotation": "n_glycosylation_sequon" }, { "start_pos": 692, "end_pos": 694, "annotation": "n_glycosylation_sequon" }, { "start_pos": 862, "end_pos": 864, "annotation": "n_glycosylation_sequon" }, { "start_pos": 937, "end_pos": 939, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S8K5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8K5" }, { "id": "SM01285", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01285" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FACT complex subunit SPT16 N-terminal lobe", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 204, "start_aa": "Leu", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1S8K5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8K5" }, { "id": "SM01286", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01286" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FACT complex subunit SPT16 middle", "eco_id": "ECO_0000259", "start_pos": 565, "end_pos": 725, "start_aa": "Ile", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1S8K5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8K5" }, { "id": "SM01287", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01287" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Histone chaperone RTT106/FACT complex subunit SPT16-like middle", "eco_id": "ECO_0000259", "start_pos": 842, "end_pos": 932, "start_aa": "Phe", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 147, "end_pos": 149 }, { "start_pos": 150, "end_pos": 152 }, { "start_pos": 545, "end_pos": 547 }, { "start_pos": 592, "end_pos": 594 }, { "start_pos": 692, "end_pos": 694 }, { "start_pos": 862, "end_pos": 864 }, { "start_pos": 937, "end_pos": 939 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S8K9-1", "uniprot_ac": "F1S8K9", "uniprot_id": "F1S8K9_PIG", "mass": { "chemical_mass": 51531.0, "monoisotopic_mass": 51531.0 }, "refseq": { "ac": "XP_020956628", "name": "protein phosphatase 2, regulatory subunit B, gamma isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956628" }, "gene_names": [ { "name": "PPP2R2C", "type": "recommended", "evidence": [ { "id": "F1S8K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8K9" } ] }, { "name": "PPP2R2C", "type": "synonym", "evidence": [ { "id": "XP_020956628", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956628" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B", "type": "recommended", "evidence": [ { "id": "F1S8K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8K9/entry#names_and_taxonomy" } ] }, { "name": "protein phosphatase 2, regulatory subunit B, gamma isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020956628", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956628" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S8K9", "url": "https://www.uniprot.org/uniprotkb/F1S8K9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPP2R2C", "url": "https://www.uniprot.org/uniprotkb/F1S8K9", "locus": { "chromosome": "8", "start_pos": 4352039, "end_pos": 4218823, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008712", "url": "https://www.ensembl.org/id/ENSSSCG00000008712" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008712", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008712", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100737053", "url": "https://www.ncbi.nlm.nih.gov/gene/100737053", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018067", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018067", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737053", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737053", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LVPMELI", "url": "https://omabrowser.org/oma/group/LVPMELI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S8K9", "url": "https://www.orthodb.org/?gene=F1S8K9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11871", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11871", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_020956628", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956628", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S8K9", "url": "https://www.uniprot.org/uniprotkb/F1S8K9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8K9-1", "url": "https://www.uniprot.org/uniprotkb/F1S8K9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEDTDTRKINHSFLRDHSYVTEADIISTVEFNHTGELLATGDKGGRVVIFQREPESKNTPHSQGEYDVYSTFQSHEPEFDYLKSLEIEEKINKIKWLPQQNAAHSLLSTNDKTIKLWKITERDKRPEGYNLKDEEGKLKDLSTVTSLQVPVLKPMDLMVEVSPRRVFANGHTYHINSISVNSDCETYMSADDLRINLWHLAITDRSFNIVDIKPANMEDLTEVITASEFHPHHCNLFVYSSSKGSLRLCDMRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYENDCIFDKFECAWNGSDSVIMTGAYNNFFRMFDRNTKRDVTLEASRESSKPRAVLKPRRVCVGGKRRRDDISVDSLDFTKKILHTAWHPAENIIAIAATNNLYIFQDKVNSDMH", "length": 447, "header": "tr|F1S8K9-1|F1S8K9_PIG Isoform 1 of Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Sus scrofa OX=9823 GN=PPP2R2C PE=3 SV=3 CANONICAL=F1S8K9-1" }, "isoforms": [ { "isoform_ac": "F1S8K9-1", "url": "https://www.uniprot.org/uniprotkb/F1S8K9/entry#F1S8K9-1", "sequence": { "sequence": "MGEDTDTRKINHSFLRDHSYVTEADIISTVEFNHTGELLATGDKGGRVVIFQREPESKNTPHSQGEYDVYSTFQSHEPEFDYLKSLEIEEKINKIKWLPQQNAAHSLLSTNDKTIKLWKITERDKRPEGYNLKDEEGKLKDLSTVTSLQVPVLKPMDLMVEVSPRRVFANGHTYHINSISVNSDCETYMSADDLRINLWHLAITDRSFNIVDIKPANMEDLTEVITASEFHPHHCNLFVYSSSKGSLRLCDMRAAALCDKHSKLFEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYENDCIFDKFECAWNGSDSVIMTGAYNNFFRMFDRNTKRDVTLEASRESSKPRAVLKPRRVCVGGKRRRDDISVDSLDFTKKILHTAWHPAENIIAIAATNNLYIFQDKVNSDMH", "length": 447, "header": "tr|F1S8K9-1|F1S8K9_PIG Isoform 1 of Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Sus scrofa OX=9823 GN=PPP2R2C PE=3 SV=3 CANONICAL=F1S8K9-1" }, "locus": { "chromosome": "8", "start_pos": 4349589, "end_pos": 4218946, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009531.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009531.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009286.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009286.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S8K9", "url": "https://www.uniprot.org/uniprotkb/F1S8K9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100737053", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737053", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C2X1-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B", "gene_name": "PPP2R2C", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MIDQADIISTVEFNHTGELLATGDKGGRVVIFQREPESKNEPYSQGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIKWLPQQNAAHSLLSTNDKTIKLWKITERDKRPEGYNLKDEEGKLKDLSTVTSLQVPVLKPMDLMVEVTPRRIFANGHTYHVNSISVNSDCETYMSADDLRINLWHLAITDRSFNIVDIKPANMEDLTEVITASEFHPHHCNLFVYSSSKGSLRLCDMRASALCDKHSKLYEEPEDPSNRSFFSEIISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMETKPVETYQVHDYLRSKLCSLYENDCIFDKFECAWNGSDSVIMTGAYNNFFRMFDRNTKRDVTLEASRESSKPRAILKPRRVCVGGKRRKDDISVDSLDFTKKILHTAWHPTENIIAIAATNNLYIFQDKVNSEMH", "length": 428 }, "evidence": [ { "id": "F1S8K9", "url": "https://omabrowser.org/oma/group/F1S8K9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": 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"pmid": "" }, { "name": "protein phosphatase type 2A complex", "id": "GO:0000159", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000159", "evidence": [ { "database": "UniProtKB", "id": "F1S8K9", "url": "https://www.uniprot.org/uniprotkb/F1S8K9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein phosphatase regulator activity", "id": "GO:0019888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019888", "evidence": [ { "database": "UniProtKB", "id": "F1S8K9", "url": "https://www.uniprot.org/uniprotkb/F1S8K9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" }, { "start_pos": 273, "end_pos": 275, "annotation": "n_glycosylation_sequon" }, { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" }, { "start_pos": 347, "end_pos": 349, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S8N9-1", "uniprot_ac": "F1S8N9", "uniprot_id": "F1S8N9_PIG", "mass": { "chemical_mass": 50388.0, "monoisotopic_mass": 50388.0 }, "refseq": {}, "gene_names": [ { "name": "BECN2", "type": "recommended", "evidence": [ { "id": "F1S8N9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8N9" } ] } ], "protein_names": [ { "name": "Beclin 2", "type": "synonym", "evidence": [ { "id": "F1S8N9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8N9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Beclin-1-C 35 kDa localized to mitochondria can promote apoptosis; it induces the mitochondrial translocation of BAX and the release of proapoptotic factors.", "evidence": [ { "database": "UniProtKB", "id": "F1S8N9", "url": "https://www.uniprot.org/uniprotkb/F1S8N9#function" }, { "database": "UniProtKB", "id": "ARBA00025121", "url": "https://www.uniprot.org/uniprotkb/ARBA00025121#function" } ] }, { "annotation": "Plays a central role in autophagy. Acts as a core subunit of the PI3K complex that mediates formation of phosphatidylinositol 3-phosphate; different complex forms are believed to play a role in multiple membrane trafficking pathways: PI3KC3-C1 is involved in initiation of autophagosomes and PI3KC3-C2 in maturation of autophagosomes and endocytosis. Involved in regulation of degradative endocytic trafficking and required for the abscission step in cytokinesis, probably in the context of PI3KC3-C2. Essential for the formation of PI3KC3-C2 but not PI3KC3-C1 PI3K complex forms. Involved in endocytosis. May play a role in antiviral host defense.", "evidence": [ { "database": "UniProtKB", "id": "F1S8N9", "url": "https://www.uniprot.org/uniprotkb/F1S8N9#function" }, { "database": "UniProtKB", "id": "ARBA00056025", "url": "https://www.uniprot.org/uniprotkb/ARBA00056025#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S8N9", "url": "https://www.uniprot.org/uniprotkb/F1S8N9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BECN2", "url": "https://www.uniprot.org/uniprotkb/F1S8N9", "locus": { "chromosome": "10", "start_pos": 15390226, "end_pos": 15388605, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010868", "url": "https://www.ensembl.org/id/ENSSSCG00000010868" } ] } } ], "crossref": [ { "id": "F1S8N9", "url": "https://alphafold.ebi.ac.uk/entry/F1S8N9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010868", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010868", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007243", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007243", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038274", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038274", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12768", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12768", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12768:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12768:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04111", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04111", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17675", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17675", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S8N9", "url": "https://www.uniprot.org/uniprotkb/F1S8N9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8N9-1", "url": "https://www.uniprot.org/uniprotkb/F1S8N9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEHFKGEATAAMSSFRFICQRCSQPLKLTESTETSQERAASLLHSARGEPGEPQGASSGEGASVINLQDGASCLPFPGGGMFWASSEFTLLGRLGSLRSLNSIQKAIRDIFGILSGETVVDHPLCQHCTDCLLEQLDAQLTTTDSEVQNYRRCLETRGWGSEAERETLRKQLKGLELEELRLVQELEQVQKNRERTTADLEAAQAETEMLDQKEWQYQKDYSKLKWQQLELHDELDSVARRLEHAQTRWDQLEKTNVFRATFEIRHAGPIAIINNFRLGSLPTVPVGWNEINAAWGQTALLLHALSNAIGLEFQRYRLVPCGNYSYLKSLTGDHVELPLFANGQQSVFLNNKFDQAMVAFLDCMQQFKEAAEKSEPPLFWPYKIDVKKGLMEDPGSHGGFCPIRTHLNTEEEWTRALKLMLINFKSSLLWVSLRYRQKRLSFSP", "length": 444, "header": "tr|F1S8N9-1|F1S8N9_PIG Isoform 1 of Beclin 2 OS=Sus scrofa OX=9823 GN=BECN2 PE=3 SV=3 CANONICAL=F1S8N9-1" }, "isoforms": [ { "isoform_ac": "F1S8N9-1", "url": "https://www.uniprot.org/uniprotkb/F1S8N9/entry#F1S8N9-1", "sequence": { "sequence": 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OS=Sus scrofa OX=9823 GN=NOP14 PE=3 SV=3 CANONICAL=F1S8P8-1" }, "isoforms": [ { "isoform_ac": "F1S8P8-1", "url": "https://www.uniprot.org/uniprotkb/F1S8P8/entry#F1S8P8-1", "sequence": { "sequence": 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CANONICAL=F1S8P8-1" }, "locus": { "chromosome": "8", "start_pos": 1737827, "end_pos": 1717308, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009511.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009511.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009267.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009267.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 562, "start_aa": "Thr", "end_pos": 562, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr562", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S8P8", "url": "https://www.uniprot.org/uniprotkb/F1S8P8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106504051", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504051", "resource": "KEGG Pathway" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K0Z9-1", "protein_name": "NOP14 nucleolar protein", "gene_name": "Nop14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKAKRTGARRQVHKAPAGAFGGPGKTNPNPFEVKVNRQKFQILGRKTRHDVGLPGVSRARAIKKRTQTLLKEYKERNKSNVFTDKRFGEYNSNISPEEKMMKRFALEQQRYHEKKNIYNLNEDEELTHYGQSLADIEKHNDIVDSDSDTEDRGALSAELTASHFGGGVHKNSSQKEGEDGDKPKTRKELIEELIAKSKQEKRERQAQREDALELTEKLDQDWKEIQILLSRKSKKSENKEKKEKPQPDAYDMMVRELGFEMKAQPSNRMKTEEELAKEEQEKLRKLEAERLRRMLGKDEHENKKKPKHTSADDLNDGFILDKDDRRLLSYKDGKMNIEDAQEEQSKGADGQENDQKEEEDESEEEGEDGESCEDPDESDGPDSHSDLESSAETEEEDETPKKEQRQTPGGKSPKEAQKAQKAAAAELPYVFAAPESFEELKFLLSGRSMEEQLLVVERIQKCNHPSLAVGNKAKLEKLFGFLLQYIGDLATDSTPDLKTIDKLVVHLYNLCQMFPESASDAIRFVLRDAMHEMEEMIETKGRAAFPGLDVLIYLKITGLLFPTSDFWHPVVTPALICMSQMLTKCPVTSLRDVVKGLFVCCLFLEYVSLSRRFVPELLNFLLGILYIATPNKKSQGSTLVHPFRALGKNSELLVVSDKADVTTWQRGSLPLHWANRQSTLTATEANHTRLSCVASCLSLLKHCVLMYSALPSFHAIVTPHQALLAEHLARSLPQELQELSRSILSEVESQKQHCPPLICEKSKPVPLKQFTPRLVKVLEFGRKQGSSKEEQERKRLIHKHKREFKGAVREIRKDNQFLARMQLSEIMERDAERKRKVKQLFNSLATQEVD", "length": 851 }, "evidence": [ { "id": "F1S8P8", "url": "https://omabrowser.org/oma/group/F1S8P8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A178W3G2-1", "protein_name": "Nucleolar-like protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGKDNKMKKKPNKKGERRMGPDAVAMKAKTQKVDNPFESIRSRRKFDILGKKRKGEERFVSVSRTRAVDKRKNTLEKEYEQSLKSSVFLDKRIGEQNDELGEFDKGIIRSQRQRQLKLAKKSMYNLSDGEEDVYEDGALGGSSVKDDFDSGLLSDEDLQDDDLEASASKRLKHLNRNREVDASGEEERRKSKKEVMEEIIMKSKLGRMEKAKQKEEKGKLMDELDKNFKSLVNSEAMESLTKPFVAEENTRDPYLLSLNDMSMEIRARPSERTKTPEEIAQKEREKLEALEEERKKRMQETEELSDGDEEIGGEESTKRLTVISGDDLGDSFSVEEDKPKRGWIDDVLEREDNVDNSESDEDEDSESEEEEDDDGESDGGDEKQRKGHHLEDWEQSDDELGAELEDEEEDDDEEDDDEEDAELRVHKKLKNDYAAPYKGEGLSGTVKEKTNMKKMSSTQRDIPFMIDPPKNFEELLALVEDCSNEDVILIVNRIRIAHSIKIKAENRKKMQVFYGVLLQYFAVLASKKPLNFDLLNMLVKPLIEMSMEIPYFAAICARQRLLKTRSQFCEAIKNPEDGCWPSLKTLFLLRLWSLIFPCSDFRHAVMTPSILLMCEYLMRCPISSGRDIAIGSFLCSIVLLVAKQSKKFCPEAILFIRTLLMAASDKKSPASAESEFYHFMELKSLTPLLCIQDNVKEVMPLNFLKIMNEPADSPYFSSDDFRASILSSVVETLEGFVEINGGLSSFPEIFMPISTLLHQIGNQEKIPQTLKEKLEDVAKLIEKKTDDHHKERKPLSMRKHKPVAIRMVNPKFEENFVPGMDNDPDKYRSDLKKLKRKLKREARGAVRELRKDSYFMSTVKAKEKAAHEQERAEKHGKAWAFLQEQEHAFKSGQLGKGKGKKRRR", "length": 904 }, "evidence": [ { "id": "F1S8P8", "url": "https://omabrowser.org/oma/group/F1S8P8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A9J7EZJ4-1", "protein_name": "Nucleolar protein 14", "gene_name": "Nop14", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGKAKRAGARRQVHKAPAGAFGGLAKANPNPFEVKVNRQKFHILGRKTRHDVGLPGVSRARAIRKRTQTLLKEYKERNKSNVFTDKRFGEYNSNISPEEKMMKRFALEQQRHHEKKNIYNLNEDEELTHYGQSLADIEKHNDIVDSDNDTEERGTLSAELTASHFGGGVHKNTSQKEGEEGDTPKSRKELIEELIAKSKQEKRERQAQREDNLELTEKLDQDWKEIQTLLSRKSQKSENKEKKEKPQPDAYDIMVRELGFEMKAQPSNRMKTEEELAKEEQERLKKLEAERLRRMLGKDEDENKRKPKHMSADDLNDGFILDKDDRRLLSYKDGKMNIENVQEEQSKEAGGQESDQKEDEDESDEEEGEDESREDTEESDGSDSHSDLESNTESEEENEKPKKEQHQTPWGKLPSDDQKVQKAAGAELPYVFAAPESYEELRSLLSGRSMEEQLLVVERIQKCNHPSLAVGNKAKLEKLFGFLLQYVGDLATDSTPDLETIDKLIVQLYNLCQKFPESASDSIKFVLRDAMHEMEEMIETKGRALFPGLDVLIYLKITGLLFPTSDFWHPVVTPALMCMSQMLTKCPVLSLQDVIKGLFVCCLFLDYVALSRRFIPELLNFLLGILYIATPNTKSQGSALVHPFRALGKNSELLVVSDKADMATWQKGSLSLHWASRLSTVTATEANHTRLSCLASCLTLLKHCVLMYSVLPSFHAIIKPHQALLTEHLVNCSLPQDLQELSRSILSEMESQKQHCQPLICEKSKPVPLKLFTPQLVKVLEFGRKQGSTKEEQERKRLIHKHKREFKGAVREIRKDNQFLARMQLSEIMERDAERKRKVKQLFNSLATQEGEWKALKRKKFKK", "length": 863 }, "evidence": [ { "id": "F1S8P8", "url": "https://omabrowser.org/oma/group/F1S8P8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKAKKVGARRKASGAPAGARGGPAKANSNPFEVKVNRQKFQILGRKTRHDVGLPGVSRARALRKRTQTLLKEYKERDKSNVFRDKRFGEYNSNMSPEEKMMKRFALEQQRHHEKKSIYNLNEDEELTHYGQSLADIEKHNDIVDSDSDAEDRGTLSAELTAAHFGGGGGLLHKKTQQEGEEREKPKSRKELIEELIAKSKQEKRERQAQREDALELTEKLDQDWKEIQTLLSHKTPKSENRDKKEKPKPDAYDMMVRELGFEMKAQPSNRMKTEAELAKEEQEHLRKLEAERLRRMLGKDEDENVKKPKHMSADDLNDGFVLDKDDRRLLSYKDGKMNVEEDVQEEQSKEASDPESNEEEGDSSGGEDTEESDSPDSHLDLESNVESEEENEKPAKEQRQTPGKGLISGKERAGKATRDELPYTFAAPESYEELRSLLLGRSMEEQLLVVERIQKCNHPSLAEGNKAKLEKLFGFLLEYVGDLATDDPPDLTVIDKLVVHLYHLCQMFPESASDAIKFVLRDAMHEMEEMIETKGRAALPGLDVLIYLKITGLLFPTSDFWHPVVTPALVCLSQLLTKCPILSLQDVVKGLFVCCLFLEYVALSQRFIPELINFLLGILYIATPNKASQGSTLVHPFRALGKNSELLVVSAREDVATWQQSSLSLRWASRLRAPTSTEANHIRLSCLAVGLALLKRCVLMYGSLPSFHAIMGPLQALLTDHLADCSHPQELQELCQSTLTEMESQKQLCRPLTCEKSKPVPLKLFTPRLVKVLEFGRKQGSSKEEQERKRLIHKHKREFKGAVREIRKDNQFLARMQLSEIMERDAERKRKVKQLFNSLATQEGEWKALKRKKFKK", "length": 857 }, "evidence": [ { "id": "F1S8P8", "url": "https://omabrowser.org/oma/group/F1S8P8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54K79-1", "protein_name": "U3 snoRNP protein", "gene_name": "nop14", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVKSKSESVNSKKGGISNGFNKIEKSTPVVKIVNPFDRKVNKTKHVVLNRQVKGASGDLGQSRYNAIEKRKKTILVEMNQMNKSNKFIDARIGENDASMSEEDKMLARFQREKLRNKNLYNLNDNDQEELTHMGQSLGNSLGSNSMSLSEGNDDYVASDDELDEVGKEFLSERQRFGGGDDDSNGNGERQDRHKSKKEIYQEIIEKSKIGKAERAKEKLKKEALTRDLDEEFNLIRGELILTNGNNSNSSNNNNLQDDAFLKFQAEQRSNEQKFASSSSSNSTNDSTKKPKEAHDDFDELLYELQGESRAHATDRTKTKEEQMKEEMERLQQKEKERLERASGDYVELEADDNVKDSDKNLPRKVLDRLKAKDNKPKMLTADSLDDENEVLNINGVDTVFYNPQIDSDDDNNNKDNSDSEDDQTNEQSSELETDDEDKSDEDEEGEEGDEEDSDLDLKDDEILSGQEDDEEEEEEKSTKKLKTNKKSKEEVNETIPFTFDTPKSIEELDEWLLNRTSEEKETILTRIGVCNHVSIKPQNKDKMKDYLPILYQRFINIAKPIKEDDQDESSNPIDWIELDVLSKYIFEISQDVPIVSGITSKDLINSCYKRICKKLEIQSKLNYWPNQQELLVIKLIGNVFPTSDFQHPVVTPTIEALNFFLSHCPIRNANDIISSLFTMNLLFFYLSPSKRYSPEISSLLISLLSTFINHNPPTIQTTTTTTTKPKNSKNSKTTTATTTTTPSNINSQWASISTNILIPTILLPLNYLKLSNQINVIKKIEPTQLEFSNLSKSNLEINDELRINILNYLISFLEKYIRFYSESQFNESLPSLFTNILNLLNKLDTNTMNLKLIEKINSLKQLIDSINKEIINKRKPLILLTSKPQTLRQFNPRFNQVFSFFNKDPDAERNHTAKMKALIKKETKGALREIVKDNQFIQAEKFKKATEERKENEKKRKQIMSELQSEQQEHKSYKKMKDRLDGRI", "length": 984 }, "evidence": [ { "id": "F1S8P8", "url": "https://omabrowser.org/oma/group/F1S8P8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8R3N1-1", "protein_name": "Nucleolar protein 14", "gene_name": "Nop14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGKAKRTGARRQVHKAPAGASGGPAKTNPNPFEVKVNRQKFQILGRKTRHDVGLPGVSRARAIRKRTQTLLKEYKERNKSNVFADKRFGEYNSNISPEEKMMKRFALEQQRYHEKKNIYNLNEDEELTHYGQSLADIEKHNDIVDSDSDTEDRGALSAELTASHFGGGVHKNSSQKEGEDGDKPKTRKELIEELIAKSKQEKRERQAQREDALELTEKLDQDWKEIQILMSRKPKKSEDKEKKEKPQPDEYDMMVRELGFEMKAQPSNRMKTEEELAKEEQERLKKLEAERLRRMLGKDEHENKKKPKHTSADDLNDGFILDKDDRRLLSYKDGKMNIEDVQEEQSKEADGQENDQKEGEDDSEEEDESHEDSEESEDPDSHSDLESNIESEEENETPKKEQRQTPGGKLPKDDQKAQKAVAAELPYVFAAPESFEELKFLLSGRSMEEQLLVVERIQKCNHPSLAVGNKAKLEKLFGFLLQYIGDLATDSTPDLKTIDKLVVHLYSLCQMFPESASDSIRFVLRDAMHEMEEMIETKGRAAFPGLDVLIYLKITGLLFPTSDFWHPVVTPALLCMSQMLTKCPVMSLQDVIKGLFVCCLFLEYVSLSRRFIPELFNFLLGILYIATPNTKSQGSTLVHPFRALGKNSELLVVSDKADVTTWQRGSLPLHWANRLSTLTATEANHTRLSCVASCLSLMKHCVLMYQALPSFHAIFRPHQALLSKHLADCSLPQELQELAQSILSAMEGQKQHCRPLVCEKSKPVPLKQFTPRLVKVLEFGRKQGSSKEEQERKRLIHKHKREFKGAVREIRKDNQFLARMQLSEIMERDAERKRKVKQLFNSLATQEGEWKALKRKKFKK", "length": 860 }, "evidence": [ { "id": "F1S8P8", "url": "https://omabrowser.org/oma/group/F1S8P8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q99207-1", "protein_name": "Nucleolar complex protein 14", "gene_name": "NOP14", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAGSQLKNLKAALKARGLTGQTNVKSKNKKNSKRQAKEYDREEKKKAIAEIREEFNPFEIKAARNKRRDGLPSKTADRIAVGKPGISKQIGEEQRKRAFEARKMMKNKRGGVIDKRFGERDKLLTEEEKMLERFTRERQSQSKRNANLFNLEDDEDDGDMFGDGLTHLGQSLSLEDELANDEEDFLASKRFNEDDAELQQPQRKKTKAEVMKEVIAKSKFYKQERQKAQGIMEDQIDNLDDNFEDVMSELMMTQPKKNPMEPKTDLDKEYDIKVKELQLDKRAAPSDRTKTEEEKNAEAEEKKRELEQQRLDRMNGMIELEEGEERGVEDLDDGFWENEEDYEDDNDGIADSDDDIKFEDQGRDEGFSQILKKKNISISCPRTHDALLDQVKKLDLDDHPKIVKNIIKAYQPKLAEGNKEKLGKFTAVLLRHIIFLSNQNYLKNVQSFKRTQNALISILKSLSEKYNRELSEECRDYINEMQARYKKNHFDALSNGDLVFFSIIGILFSTSDQYHLVITPALILMSQFLEQIKFNSLKRIAFGAVLVRIVSQYQRISKRYIPEVVYFFQKILLTFIVEKENQEKPLDFENIRLDSYELGLPLDVDFTKKRSTIIPLHTLSTMDTEAHPVDQCVSVLLNVMESLDATISTVWKSLPAFNEIILPIQQLLSAYTSKYSDFEKPRNILNKVEKLTKFTEHIPLALQNHKPVSIPTHAPKYEENFNPDKKSYDPDRTRSEINKMKAQLKKERKFTMKEIRKDAKFEARQRIEEKNKESSDYHAKMAHIVNTINTEEGAEKNKYERERKLRGGKK", "length": 810 }, "evidence": [ { "id": "F1S8P8", "url": "https://omabrowser.org/oma/group/F1S8P8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q9VEJ2-1", "protein_name": "Nucleolar protein 14 homolog", "gene_name": "l(3)07882", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MVAKGKKASADAVYAKKTTRSANPFDNSTAQSSKRGNPFDVHVNKEKFKILGRICKHDRGMPGVSRAKALQKRAQTLGQQFAVKHKTNRFKDNRIGKHLSGDQLTESVMNARYLAEKMSQVRSNQKAEKFNLNDDELLTHRGQTLEEIEQYRDERSDDEELDDEALDADFTAAAHFGGEGDSAQDRQAAIDEMIVEQKRRKNEIAKEKDEVYDLTEKLDANYKLLLPLVAKVTKDEQDAKPPPDAYDKLLKEMIFEPRGSVADKLINPDELAKQEAARLEKLENERLRRMRADGEEDEEASVAKPKHRSADDLDDGYFLAGEDDEGDDTLAYDLDGNLGTHLNGKKEAVLKGDENEDDDDKEGEEEEEEDSDEESDSEVDNLSDLKESESESEPEEAPKASKKKAKKSADTIPASLDTSIPFTIKMPKTYEDFTELLSKHATAQKAIIIERIIKCNHPKLEGVNRENVVKLYSFLLQYLKDLFEDASEQDIREHFQLLSKLMPYLYELTQLNPERMSNTLLEVIKEKYEEFRKNHKMYPSLDTLVYFKLVANLYSTSDFRHPVVTPCFIFIQHVLSRSRVRTRQEISMGLFLVTVVLEFVSQSKRLVPAVFNFLQGIVHMSIPKRDVEQLEITPPFERDGPLSKLLALPANTESTKLEPQQLQPTDLVTQTITPDFKVRALDTSLLLIKEALQLVEEHVGACYLAQPFLALLSRLPLESYPEHVHQHHKDATELAEKLAAQKMKPLAPAEKKPKALRLLEPRFEAVYDDKRRPKMSKAKEERAKLLHKIKREKKGAIREIRRDTSFVQMLRLKQTLQSDKERHEKVKRIYQEASVQQGELNELSRAKKKKKF", "length": 852 }, "evidence": [ { "id": "F1S8P8", "url": "https://omabrowser.org/oma/group/F1S8P8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S8P8", "url": "https://www.uniprot.org/uniprotkb/F1S8P8" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1S8P8", "url": "https://www.uniprot.org/uniprotkb/F1S8P8" } ], "pmid": "" }, { "name": "Noc4p-Nop14p complex", "id": "GO:0030692", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030692", "evidence": [ { "database": "UniProtKB", "id": "F1S8P8", "url": "https://www.uniprot.org/uniprotkb/F1S8P8" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "F1S8P8", "url": "https://www.uniprot.org/uniprotkb/F1S8P8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "enzyme binding", "id": "GO:0019899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019899", "evidence": [ { "database": "UniProtKB", "id": "F1S8P8", "url": "https://www.uniprot.org/uniprotkb/F1S8P8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "maturation of SSU-rRNA", "id": "GO:0030490", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030490", "evidence": [ { "database": "UniProtKB", "id": "F1S8P8", "url": "https://www.uniprot.org/uniprotkb/F1S8P8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 676, "end_pos": 678, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S8P8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 852, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S8P8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S8P8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 562 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 676, "end_pos": 678 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], 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"protein_name": "Nucleoplasmin-3", "gene_name": "Npm3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAGAAAALAFLNQESRARAGGVGGLRVPAPVTMDSFFFGCELSGHTRSFTFKVEEEDDTEHVLALNMLCLTEGATDECNVVEVVARDHDNQEIAVPVANLRLSCQPMLSVDDFQLQPPVTFRLKSGSGPVRITGRHQIVCINNDLSEEESDDESEEDEIKLCGILPAKKHRGRP", "length": 175 }, "evidence": [ { "id": "F1S8T7", "url": "https://omabrowser.org/oma/group/F1S8T7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1S8T7", "url": "https://www.uniprot.org/uniprotkb/F1S8T7" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1S8T7", "url": "https://www.uniprot.org/uniprotkb/F1S8T7" } ], "pmid": "" }, { "name": "histone binding", "id": "GO:0042393", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042393", "evidence": [ { "database": "UniProtKB", "id": "F1S8T7", "url": "https://www.uniprot.org/uniprotkb/F1S8T7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S8T7", "url": "https://www.uniprot.org/uniprotkb/F1S8T7" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1S8T7", "url": "https://www.uniprot.org/uniprotkb/F1S8T7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S8T7", "url": "https://www.uniprot.org/uniprotkb/F1S8T7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "F1S8T7", "url": "https://www.uniprot.org/uniprotkb/F1S8T7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S8T7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8T7" }, { "id": "PF03066", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03066" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nucleoplasmin core", "eco_id": "ECO_0000259", "start_pos": 37, "end_pos": 139, "start_aa": "Phe", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S8U0-1", "uniprot_ac": "F1S8U0", "uniprot_id": "F1S8U0_PIG", "mass": { "chemical_mass": 23170.0, "monoisotopic_mass": 23170.0 }, "refseq": { "ac": "XP_001926760", "name": "protein DPCD isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926760" }, "gene_names": [ { "name": "DPCD", "type": "recommended", "evidence": [ { "id": "F1S8U0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8U0" } ] }, { "name": "DPCD", "type": "synonym", "evidence": [ { "id": "XP_001926760", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926760" } ] } ], "protein_names": [ { "name": "Protein DPCD", "type": "recommended", "evidence": [ { "id": "F1S8U0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8U0/entry#names_and_taxonomy" } ] }, { "name": "protein DPCD isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001926760", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926760" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S8U0", "url": "https://www.uniprot.org/uniprotkb/F1S8U0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DPCD", "url": "https://www.uniprot.org/uniprotkb/F1S8U0", "locus": { "chromosome": "14", "start_pos": 112637913, "end_pos": 112617398, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010565", "url": "https://www.ensembl.org/id/ENSSSCG00000010565" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010565", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010565", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152587", "url": "https://www.ncbi.nlm.nih.gov/gene/100152587", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026224", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026224", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152587", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152587", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PILCEME", "url": "https://omabrowser.org/oma/group/PILCEME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S8U0", "url": "https://www.orthodb.org/?gene=F1S8U0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31921", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31921", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31921:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31921:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14913", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14913", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001926760", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926760", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S8U0", "url": "https://www.uniprot.org/uniprotkb/F1S8U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8U0-1", "url": "https://www.uniprot.org/uniprotkb/F1S8U0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVTGWLESLRAAEKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGALGQWQIEVGEPAVPGAGSLGPELITESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSVDQKERCVVVRTTNKKYYKKFPIPDLDRYQLPLDDSLLSFAHANSTLIISYHKPKEVLVAESELQKELKKVKTAHNSDGDCKTQ", "length": 203, "header": "tr|F1S8U0-1|F1S8U0_PIG Isoform 1 of Protein DPCD OS=Sus scrofa OX=9823 GN=DPCD PE=3 SV=1 CANONICAL=F1S8U0-1" }, "isoforms": [ { "isoform_ac": "F1S8U0-1", "url": "https://www.uniprot.org/uniprotkb/F1S8U0/entry#F1S8U0-1", "sequence": { "sequence": "MAVTGWLESLRAAEKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGALGQWQIEVGEPAVPGAGSLGPELITESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSVDQKERCVVVRTTNKKYYKKFPIPDLDRYQLPLDDSLLSFAHANSTLIISYHKPKEVLVAESELQKELKKVKTAHNSDGDCKTQ", "length": 203, "header": "tr|F1S8U0-1|F1S8U0_PIG Isoform 1 of Protein DPCD OS=Sus scrofa OX=9823 GN=DPCD PE=3 SV=1 CANONICAL=F1S8U0-1" }, "locus": { "chromosome": "14", "start_pos": 112637197, "end_pos": 112617423, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011557.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011557.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011255.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011255.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S8U0", "url": "https://www.uniprot.org/uniprotkb/F1S8U0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152587", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152587", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7FKZ3-1", "protein_name": "Protein DPCD", "gene_name": "Dpcd", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAVTSWLESLRAAEKTALLQDGKRMVHYLFPDGKEMAEEYDEKTSELLVRKWRVKNALGALGQWQLEVGEPVLSGAGSLGSELIKESNANPIFMRKDTKTSFQWRIRNLPYPKDVYSVSVAQKERCVIVRTTNKKYYKKFSIPDLDRHQLPLDDSALSFAHANCTLIISVRFAQTWHQEELPLPHLLPWLQASQALVSEAKGGPGG", "length": 206 }, "evidence": [ { "id": "F1S8U0", "url": "https://omabrowser.org/oma/group/F1S8U0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q0P448-1", "protein_name": "Protein DPCD", "gene_name": "dpcd", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAVQQWADALKKAKKTALISDGKRKVHYQFEDGNEMAEEYDLKTDELVMRKWRHKTTFGGQGQWTLEVGETNPTGATSDLIKENSSNPLFMRRDTKTSFQWRIRNISYPLEVYSVTAEPMERCCVIRTSNKKYYKKFSIPDLERCQLPLESTALSFTHANNTLIISYKKPKEILTLEQELLGELKKLKGTSEGDIDCKTQ", "length": 200 }, "evidence": [ { "id": "F1S8U0", "url": "https://omabrowser.org/oma/group/F1S8U0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q24K21-1", "protein_name": "Protein DPCD", "gene_name": "DPCD", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAVTGWLESLRAAEKTALLQDGRRKVHYLFPNGKEMAEEYDEKTNELLVRKWRVKSALGALGQWQIEVGEPALPGAGSLGPELITESNANPIFVRKDTKMSFQWRIRNLPYPKDVYNVFVDQKERCVVVRTTNKKYYKKFSIPDLERYQLPLDESLLSFAHANSTLIISYQKPKEVLVAESELQKELKKVKTAHSSDGDCKTQ", "length": 203 }, "evidence": [ { "id": "F1S8U0", "url": "https://omabrowser.org/oma/group/F1S8U0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AYM4-1", "protein_name": "Protein DPCD", "gene_name": "Dpcd", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAVTSWLEILRSAEKTALLQDGKRMVHYLFPDGKEMAEEYDEKTSELLVRKWRVKNALGALGQWQLEVGEPMPSGAGSLGSELIKESNANPIFMRKDTKTSFQWRIRNLPYPKDVYSVSVAQKERCVIVRTTNKKYYKKFSIPDLDRHQLPLEDSALSFAHANCTLIISYQKPKEVMAAESELQKELKKVKTAHSSDGDCKTQ", "length": 203 }, "evidence": [ { "id": "F1S8U0", "url": "https://omabrowser.org/oma/group/F1S8U0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BPA8-1", "protein_name": "Protein DPCD", "gene_name": "Dpcd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVTSWLEVLRSAEKTALLQDGKRMVHYLFPDGKEMAEEYDEKTSELLVRKWRVKNALGALGQWQLEVGEPVPSGAGSLGSELIKESNANPIFMRKDTKTSFQWRIRNLPYPKDVYSVSVAQKERCVIVRTTNKKYYKKFSIPDLDRHQLPLEDSALSFAHANCTLIISYQKPKEVMAAESELQKELKKVKTAHGSAGDCKTQ", "length": 203 }, "evidence": [ { "id": "F1S8U0", "url": "https://omabrowser.org/oma/group/F1S8U0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BVM2-1", "protein_name": "Protein DPCD", "gene_name": "DPCD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVTGWLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGAMGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSVDQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLSFAHANCTLIISYQKPKEVVVAESELQKELKKVKTAHSNDGDCKTQ", "length": 203 }, "evidence": [ { "id": "F1S8U0", "url": "https://omabrowser.org/oma/group/F1S8U0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W0M5-1", "protein_name": "Protein DPCD", "gene_name": "Dmel\\CG13901", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSYQNWLNYLQAAEKNSMISGRARKVLYKFPDGRQMAEEYNMDTGIVQRRAWKSKSNKIMGESEWEIELGDEPRQLNWSGNKPPGSGEETDSLAGGDFTLRESNTAPLLTKRITKKNIEWRIRNMPYSLDTYSVTADPEKRAIVVRTSNKKYYKVIPVPELDRCGVKPAQESLSVHHQFNTLIITYQKPDILCEMEAQVLLLLKNVDTETDMDDLLKGLMAK", "length": 222 }, "evidence": [ { "id": "F1S8U0", "url": "https://omabrowser.org/oma/group/F1S8U0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], 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"https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156375", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156375", "resource": "KEGG Pathway" }, { "id": "R-SSC-189451", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-189451", "resource": "Reactome", "description": "Heme biosynthesis" }, { "id": "R-SSC-9864848", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9864848", "resource": "Reactome", "description": "Complex IV assembly" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A414-1", "protein_name": "Cytochrome c oxidase assembly homolog COX15", "gene_name": "Cox15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRLFLPPLKALMGSRNVGLLVPKAASRAQCGGGSYGGRRPLRPGQYGTITEVALQSGKGTVSLPSRAAERAVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAEFQKYQQFPEFKILNHDMTLAEFKFIWYMEYSHRMWGRAVGLAYILPAAYFWRKGWLNRGMKGRVLALCGLVCFQGLLGWYMVKSGLEEKPESYDIPRVSQYRLAAHLGSALILYCGSLWTSLSLLLPQHKIPETRQLLWLRRFAGGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESWIPEDLLTFSPILKNVFENPTMVQFDHRLLGVTSVTAITMLYFLSRRIPLPRRTKMAAVTLLALAYAQVALGISTLLMYVPTPLAATHQSGSLALLSGALWLMNELRRVPK", "length": 414 }, "evidence": [ { "id": "F1S8W1", "url": "https://omabrowser.org/oma/group/F1S8W1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NMU0-1", "protein_name": "COX15, cytochrome c oxidase assembly homolog", "gene_name": "COX15", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLRTLCCGGGRFFRLGPSLVPLRQPPRRGLPQQPAPAVPPAVGRWLLACSGAVAGAVVLGGVTRLTESGLSMVDWHLVKEMKPPRTQQEWEAEFQKYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRVVGLAYILPAAYFWRKGWLSRPMKGRVLALCGLVCFQGLLGWYMVKSGLEEKPDSHDIPRVSQYRLAAHLGSALVLYAASLWTGLSLLLPRHQLHETRQLLQLRHFAHGTTALIFLTALSGAFVAGLDAGLVYNSFPKMGERWIPDDLLAFSPTLRNIFENPTTVQFDHRILGTASVTAVTALYLFSRKISLPHRTRIAVTSLLAVAWVQVGLGISTLLLYVPTPLAATHQSGSLALLSVALWLMSELRRMPK", "length": 383 }, "evidence": [ { "id": "F1S8W1", "url": "https://omabrowser.org/oma/group/F1S8W1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1R355-1", "protein_name": "1.17.99.9", "gene_name": "cox15", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMLLRLAMCRCQAARNLQQIQRTPLRQWLLQRGQNTVSSGAASVGSVSIRSAASDRLIGRWLLGCSGLVLGAVVLGGVTRLTESGLSMVDWHLVKEMKPPQTQAEWEQEFAKYQQFPEFKIMNHDMTLTEFKFIFYMEWGHRMWGRLVGLAYILPAAYFWRRGYFSRSMKTRVLGLCGFVVFQGLLGWYMVKSGLEEKPESYDVPRVSQYRLAAHLGSALLLYAASLWTGLTLLLPANRMPDSRQLLNLRRFAKMTGGLVFLTALSGAFVAGLDAGLVYNSFPKMGERWIPDDLLAFSPALKNVFENPTTVQFDHRILGIGSLTAITGLYLFSRRMILPRRAKMAISLLTAMAYTQVVLGISTLLLYVPTPLAATHQSGSVALLTFAIWVLAELRKVPK", "length": 399 }, "evidence": [ { "id": "F1S8W1", "url": "https://omabrowser.org/oma/group/F1S8W1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3IBW2-1", "protein_name": "Cytochrome c oxidase assembly protein COX15 homolog isoform X2", "gene_name": "LOC100751499", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MQRLLLPPLKAFVGSRSVGLLVPGPASRAQWGCSFGSRRPLRPGQYGTITEVALQSGKGTVPLPSKAAEQAVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAEFQKYQQFPEFKILNHDMTLAEFKFIWYMEYSHRMWGRAVGLAYILPAAYFWRKGWLSRGMKGRVLALCGLVCFQGLLGWYMVKSGLEEKPESYDIPRVSQYRLAAHLGSALVLYCASLWTSLSLLLPQHKLPETQQLLWLRRFAGGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGDSWIPEDLLTFSPILKNVFENPTMVQFDHRLLGITSVTAITALYFLSRRVPLPRRTKMAAVTLLALAYTQVALGISTLLMYVPTPLAATHQSGSLALLSGALWLMNELRRVPK", "length": 413 }, "evidence": [ { "id": "F1S8W1", "url": "https://omabrowser.org/oma/group/F1S8W1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O76740-1", "protein_name": "Cytochrome c oxidase assembly protein", "gene_name": "coxA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNRAGLRCLKPSIFKQTKSNLIINNSNILSVSSRLSKNNNINQSFNNGFLQSNSKLNSIISLNNNNNNYYKRFYSNENKTNSNEQVKEEEKTNDNSSNNNEEDYKEPEQSKGNKKVGNWLLFSCGLVGAMIVIGGITRLTESGLSIVDWKPVVGAIPPITQEEWEAEFEKYKQFPEYKRLNMGMTLSEFKEIFFWEYSHRLLGRVIGVAFFFPFVWYLKKGYINRSLAKKLSVVFLMGGAQGALGWYMVKSGLDEKLIQDRGSDIPRVSQYRLAAHLGSAFVIYMALLWFGLGLVRPSALSPAMMQKLKSAMSTLAQQKSSFTIEKMKKYSHQVSGLIFLTAMSGAFVAGLDAGLVYNTFPKMGHQWIPDDIINPKIKPAYKNMFEHDVTVQFQHRVLATITYGSILALSAFAYRGRLALSPKARLATNCLLAVGTAQVALGITTLLTFVPVSLGAAHQTGSLTLLSVAIWLLHELKKLPK", "length": 482 }, "evidence": [ { "id": "F1S8W1", "url": "https://omabrowser.org/oma/group/F1S8W1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P40086-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLFRNIEVGRQAAKLLTRTSSRLAWQSIGASRNISTIRQQIRKTQLYNFKKTVSIRPFSLSSPVFKPHVASESNPIESRLKTSKNVAYWLIGTSGLVFGIVVLGGLTRLTESGLSITEWKPVTGTLPPMNQKEWEEEFIKYKESPEFKLLNSHIDLDEFKFIFFMEWIHRLWGRAIGAVFILPAVYFAVSKKTSGHVNKRLFGLAGLLGLQGFVGWWMVKSGLDQEQLDARKSKPTVSQYRLTTHLGTAFFLYMGMLWTGLEILRECKWIKNPVQAISLFKKLDNPAIGPMRKISLALLAVSFLTAMSGGMVAGLDAGWVYNTWPKMGERWFPSSRELMDENFCRREDKKDLWWRNLLENPVTVQLVHRTCAYVAFTSVLAAHMYAIKKKAVIPRNAMTSLHVMMGVVTLQATLGILTILYLVPISLASIHQAGALALLTSSLVFASQLRKPRAPMRNVIITLPHSSKVTSGKILSEASKLASKPL", "length": 486 }, "evidence": [ { "id": "F1S8W1", "url": "https://omabrowser.org/oma/group/F1S8W1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08DG6-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQRLLFTPLTAFLGSPCLRLLVPRVAPRTQCGCSCGIRRPLRPGQYSTISDVALQPGRSTVSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSKEEWEAEFQKYQQFPEFKILNHDMTLAEFKFIWYMEYSHRMWGRLVGLAYILPAAYFWKKGWLTRGLKGRVLALCGLVCFQGLLGWYMVKSGLEEKPDSHDIPRVSQYRLAAHLGSALVLYCASLWTSLSLLLPQHKLTETRQLLRLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESWIPEDLFTFSPLLRNVFENPTMVQFDHRVLGIASVTAVTVLYFLSRRIPLPRRTKIAATTLLALAYTQVGLGISTLLMYVPTPLAATHQSGSLALLSVALWLMNELRRVPK", "length": 413 }, "evidence": [ { "id": "F1S8W1", "url": "https://omabrowser.org/oma/group/F1S8W1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q7KZN9-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQRLLFPPLRALKGRQYLPLLAPRAAPRAQCDCIRRPLRPGQYSTISEVALQSGRGTVSLPSKAAERVVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAEFQRYQQFPEFKILNHDMTLTEFKFIWYMEYSHRMWGRLVGLVYILPAAYFWRKGWLSRGMKGRVLALCGLVCFQGLLGWYMVKSGLEEKSDSHDIPRVSQYRLAAHLGSALVLYCASLWTSLSLLLPPHKLPETHQLLQLRRFAHGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESWIPEDLFTFSPILRNVFENPTMVQFDHRILGITSVTAITVLYFLSRRIPLPRRTKMAAVTLLALAYTQVGLGISTLLMYVPTPLAATHQSGSLALLTGALWLMNELRRVPK", "length": 410 }, "evidence": [ { "id": "F1S8W1", "url": "https://omabrowser.org/oma/group/F1S8W1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BJ03-1", "protein_name": "Heme A synthase COX15", "gene_name": "Cox15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQRLLLPSLRALTGSRNVGLLVPRVASRTQCGSSCGSQRPLRPGQYSTITEVALQSGKGTVSLPSRAAERAVGRWLLVCSGTVAGAVILGGVTRLTESGLSMVDWHLIKEMKPPTSQEEWEAEFQKYQQFPEFKILNHDMTLAEFKFIWYMEYSHRMWGRAVGLAYILPAAYFWRKGWLNRGMKGRVLALCGLVCFQGLLGWYMVKSGLEEKPESYDIPRVSQYRLAAHLGSALVLYCASLWTSLSLLLPQHKLPETRQLLWLRRFAGGTAGLVFLTALSGAFVAGLDAGLVYNSFPKMGESWIPEDLLTFSPVLKNVFENPTMVQFDHRLLGVTSVTAITVLYFLSRRIPLPRRTKMAAVTLLALAYAQVALGISTLLMYVPTPLAATHQSGSLALLSGALWLMNELRRVPK", "length": 413 }, "evidence": [ { "id": "F1S8W1", "url": "https://omabrowser.org/oma/group/F1S8W1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FKT8-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFRAVGSALKRNKEAFNGIARGFTTSSHRVFTSNITAASVTSASSSPLAGNSFYGLRSLLKGQNASMFRRMSTVASISSESKEGLKLLVTGGPQAQKWVGIWLFGSAAWVFSMVVLGGVTRLTRSGLSMTDWKFTGEFPPLSDEAWAKEFEKYKQSPEYKRVNKGMNLEDFKFIYWMEYAHRMWGRGLGIMFALPFSYFLRKGYITLRLGVQLSGLFALGAGQGFIGWWMVKSGLEEPPSEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESLAWVRGAAKVKKLALPVSLIVGITAISGAFVAGNDAGRAFNTFPKMGDTWIPDNIFEMKPLLRNFFENTATVQLDHRLLATTTLIAIGTMWWFTRKLDIHPAVKALIGSTVGMTAVQVTLGVSTLLSYVPVSLGSAHQAGALTLLTLMLLLNHTLRRPSPSLLKSLPQVAKSNFS", "length": 457 }, "evidence": [ { "id": "F1S8W1", "url": "https://omabrowser.org/oma/group/F1S8W1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9W1F5-1", "protein_name": "Cytochrome c oxidase assembly protein COX15 homolog", "gene_name": "Dmel\\CG3803", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLRLLQKRTNLIKLVVPGPRLHQTIAQTAIKEIPVIKPISTPKSDKTVGRWFLGVSGMVFVAVGLGGVTRLTESGLSMVTWKLTGERMPRTQEEWVQEFNLYQQYPEYKLKNVNMTVEEFKFIFMMEYMHRMWGRAIGGFFLLPAVYFWRKGYFCAKTKKSVLLLGTLIGLQGLMGWYMVKSGLEDRFQDPNDVPRVSQYRLASHLAAAFVLYSLSLSKAMSLLIPTNTFVIQAKKAFNIKGLTHLTKAMVLLTAISGAFVAGLDAGLVYNSFPKMGDKWIPDDMWTFAPIQKNITENPTTVQFNHRILGISTVTLTTALWLVTRRMQLPKRANWAINAVVAMAWTQATLGVTTLLNYVPVPLATAHQSGSLILLSFALWLSHEVRLLKYLPK", "length": 393 }, "evidence": [ { "id": "F1S8W1", "url": "https://omabrowser.org/oma/group/F1S8W1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1S8W1", "url": "https://www.uniprot.org/uniprotkb/F1S8W1" } ], "pmid": "" }, { "name": "cytochrome complex", "id": "GO:0070069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070069", "evidence": [ { "database": "UniProtKB", "id": "F1S8W1", "url": "https://www.uniprot.org/uniprotkb/F1S8W1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1S8W1", "url": "https://www.uniprot.org/uniprotkb/F1S8W1" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on the CH-CH group of donors", "id": "GO:0016627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016627", "evidence": [ { "database": "UniProtKB", "id": "F1S8W1", "url": "https://www.uniprot.org/uniprotkb/F1S8W1" } ], "pmid": "" }, { "name": "heme A synthase activity", "id": "GO:0120547", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120547", "evidence": [ { "database": "UniProtKB", "id": "F1S8W1", "url": "https://www.uniprot.org/uniprotkb/F1S8W1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cytochrome complex assembly", "id": "GO:0017004", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017004", "evidence": [ { "database": "UniProtKB", "id": "F1S8W1", "url": "https://www.uniprot.org/uniprotkb/F1S8W1" } ], "pmid": "" }, { "name": "heme A biosynthetic process", "id": "GO:0006784", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006784", "evidence": [ { "database": "UniProtKB", "id": "F1S8W1", "url": "https://www.uniprot.org/uniprotkb/F1S8W1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "63388", "name": "", "equation": "Fe(II)-heme o + 2 A + H2O = Fe(II)-heme a + 2 AH2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "63388", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/63388" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S8W9-1", "uniprot_ac": "F1S8W9", "uniprot_id": "F1S8W9_PIG", "mass": { "chemical_mass": 63249.0, "monoisotopic_mass": 63249.0 }, "refseq": { "ac": "XP_020927977", "name": "pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 isoform X7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927977" }, "gene_names": [ { "name": "PYROXD2", "type": "recommended", "evidence": [ { "id": "F1S8W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8W9" } ] }, { "name": "PYROXD2", "type": "synonym", "evidence": [ { "id": "XP_020927977", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927977" } ] } ], "protein_names": [ { "name": "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2", "type": "recommended", "evidence": [ { "id": "F1S8W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8W9/entry#names_and_taxonomy" } ] }, { "name": "pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 isoform X7", "type": "synonym", "evidence": [ { "id": "XP_020927977", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927977" } ] } ], "function": [ { "annotation": "Probable oxidoreductase that may play a role as regulator of mitochondrial function.", "evidence": [ { "database": "UniProtKB", "id": "F1S8W9", "url": "https://www.uniprot.org/uniprotkb/F1S8W9#function" }, { "database": "UniProtKB", "id": "ARBA00037217", "url": "https://www.uniprot.org/uniprotkb/ARBA00037217#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S8W9", "url": "https://www.uniprot.org/uniprotkb/F1S8W9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PYROXD2", "url": "https://www.uniprot.org/uniprotkb/F1S8W9", "locus": { "chromosome": "14", "start_pos": 109704136, "end_pos": 109728874, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010533", "url": "https://www.ensembl.org/id/ENSSSCG00000010533" } ] } } ], "crossref": [ { "id": "F1S8W9", "url": "https://alphafold.ebi.ac.uk/entry/F1S8W9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010533", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010533", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155159", "url": "https://www.ncbi.nlm.nih.gov/gene/100155159", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GLYHCGS", "url": "https://omabrowser.org/oma/group/GLYHCGS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10668", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10668", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10668:SF103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10668:SF103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01593", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01593", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020927977", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927977", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S8W9", "url": "https://www.uniprot.org/uniprotkb/F1S8W9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8W9-1", "url": "https://www.uniprot.org/uniprotkb/F1S8W9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAACGQGFSRAVRASPHPAWRQAHSDTTRGRLKSEYDAVVIGAGHNGLVAVAYLQRLGVNTVVFERRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYTDLELKKHGLRLHLRNPYSFTPMLEEGTGGKVPRSLLLGTDMAENQKQIAQFSRKDAQAFPKYEAFMNRLALAIEPLLDAAPVDMEAFQRGSLLQRLKSLSTFKPLLQAGRTLGAQLPQYYQVLTAPSVKVLDQWFESEPLKATLATDAVIGAMTSPHIPGSGYVLLHHVMGGLEGMRGAWAYVEGGMGALSEAIASSATAHGASIFTEKTVASVQVSSGGRVQGVVLQDGSEVRSRVVLSNASPQSTFLKLTPQEWLPEEFVQRISQLDTQSPVTKINVAVNRLPNFLAAPNTPRGQPLPHHQCSTHLNCEDTLRIHQAFEDAVDGLPSHRPIIELCIPSSLDPTLAPPGCHVISLFTQYTPYTLAGGKAWDELERNTYADRVFDCIEAYAPGFKGSVVGRDILTPPDLERIFDLPGGNIFHCAMTLDQLYFARPVPLHSSYRCPLPGLYLCGSGAHPGGGVMGAAGRNAARVVFRDLRSM", "length": 582, "header": "tr|F1S8W9-1|F1S8W9_PIG Isoform 1 of Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Sus scrofa OX=9823 GN=PYROXD2 PE=1 SV=3 CANONICAL=F1S8W9-1" }, "isoforms": [ { "isoform_ac": "F1S8W9-1", "url": "https://www.uniprot.org/uniprotkb/F1S8W9/entry#F1S8W9-1", "sequence": { "sequence": "MAACGQGFSRAVRASPHPAWRQAHSDTTRGRLKSEYDAVVIGAGHNGLVAVAYLQRLGVNTVVFERRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYTDLELKKHGLRLHLRNPYSFTPMLEEGTGGKVPRSLLLGTDMAENQKQIAQFSRKDAQAFPKYEAFMNRLALAIEPLLDAAPVDMEAFQRGSLLQRLKSLSTFKPLLQAGRTLGAQLPQYYQVLTAPSVKVLDQWFESEPLKATLATDAVIGAMTSPHIPGSGYVLLHHVMGGLEGMRGAWAYVEGGMGALSEAIASSATAHGASIFTEKTVASVQVSSGGRVQGVVLQDGSEVRSRVVLSNASPQSTFLKLTPQEWLPEEFVQRISQLDTQSPVTKINVAVNRLPNFLAAPNTPRGQPLPHHQCSTHLNCEDTLRIHQAFEDAVDGLPSHRPIIELCIPSSLDPTLAPPGCHVISLFTQYTPYTLAGGKAWDELERNTYADRVFDCIEAYAPGFKGSVVGRDILTPPDLERIFDLPGGNIFHCAMTLDQLYFARPVPLHSSYRCPLPGLYLCGSGAHPGGGVMGAAGRNAARVVFRDLRSM", "length": 582, "header": "tr|F1S8W9-1|F1S8W9_PIG Isoform 1 of Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Sus scrofa OX=9823 GN=PYROXD2 PE=1 SV=3 CANONICAL=F1S8W9-1" }, "locus": { "chromosome": "14", "start_pos": 109728811, "end_pos": 109705111, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011523.3", "url": "https://www.ensembl.org/id/ENSSSCT00000011523.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011222.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011222.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S8W9", "url": "https://www.uniprot.org/uniprotkb/F1S8W9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "F1Q815-1", "protein_name": "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2", "gene_name": "pyroxd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAVSVRAGRAHRAFISVTQRCSHSSTALKPQYDAVIIGAGHNGLIASAYLQKGGLRTAVLERRHVLGGAAVSEEIIPGFHFSRASYLLSLLRPHIYQDLELKKHGLKVYMRDPYSFTPMLEDGVGGRPPRSLLLGSDLTNTRQEIGKFSEKDAKVYPDFLRYLETLACAIHPLLDAPPVDIPGLTQGSLTKRLSALRSLKPLVKSGLKLGKNIPDFYELVTAPAMKVLNRWFESEPLIATLATDSVIGANTSPNNPGSGYVLLHHVMGELEKEKGSWGYVEGGMGGVPQSIARSARSLGADIFTNTDVEQVLIGPDGSAKGVVLTDGTEVHSKVVLSNATPHVTFKRLTPQDALPEAFITAVDQIDYTSPVTKINVAVDKLPDFLAAPNGADGKAGPHHQCSIHLNCESVEVLEDAYWEGQHGRPSSRPMIEMTIPSVLDPTLAPPGCHVVSLFIQFTPYLLEGRRAWTDEDKERFGDTVFDWVERYAPGFKASIVGKDILTPADLERVFGLTGGNIFHGSMSLDQLYLARPLPSIADYRSPVKGLYLCGSGSHPGGGVMGAAGWSSALRVLADFKRL", "length": 578 }, "evidence": [ { "id": "F1S8W9", "url": "https://omabrowser.org/oma/group/F1S8W9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F4K658-1", "protein_name": "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MWRRSFSTLPKKKWDAVVIGGGHNGLTAAAYLARGGLSVAVLERRHVIGGAAVTEEIVPGFKFSRCSYLQGLLRPCIIRELELGRHGLKLLKRSPSSFTPCLDGRYLLLGPDQDLNHSEISKFSKHDADAYPRYEKQLERFCGFMDPLLDSTPPESLQSASSFNDKLSNKMYKSAFWARCLRQAVSLGHKDMVAFMDLLLAPASKVLNNWFESDVLKASLATDAVIGSTASVHTPGSGYVLLHHVMGETDGEKGIWSYVEGGMGSVSMAIANAAKEAGAEIFTNAEVSEILTEDSSIVKGVLLADGTRVESSAILSNATPYRTYVELVPTNVLPENFVSAIKNSDYSSATTKINLAVDKLPQFQCCNTNHSGPGPEHFGTIHIGAESMDEVHSACHDSENGLPSRRPVIEMTIPSTLDNTISPPGKHVINLFIQYTPYKPSDGSWEDPTYREAFAQRCFKLIDEYAPGFSSSIISYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRSPLKGLYLCGSGAHPGGGVMGAPGRNAAHVVLQDLKRI", "length": 556 }, "evidence": [ { "id": "F1S8W9", "url": "https://omabrowser.org/oma/group/F1S8W9/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q3MHH6-1", "protein_name": "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2", "gene_name": "PYROXD2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTICGRGLRRAVGASPRPTWRRALSDTRGRLKPEYDAVVVGAGHNGLVAAAYLQRFGVNTAVFERRHVIGGAAVTEEIVPGFKFSRASYLLSLLRPQIYSELELKKHGLRLHLRNPYSFTPMLEEGTGGKVPRSLLLGTDMVENQKQIAQFSKKDAQAFPKYEAFMDRLALAIDPLLDSAPVDLEAFQRGSLLQRLKSLSTLKPLWQAGCILGAQLPQYYQVLTAPAAKVLDQWFESEPLKATLATDAVIGAMTNPYIPGSGYVLLHHVMGSLEGVRGAWGYVQGGMGALSDAIASSATAHGVSIFTEKTVAKVQVSSGGRVQGVVLQDGSEVRSKVVLSNASPQITFLKLTPQEWLPEEFVARIAQLDTKSPVTKINVAVNRLPDFLAAPNTPGDQPLPHHQCSIHLNCEDTLLVHQAFEDTLDGLPSKRPLIELCIPSSLDPTLAPPGCHVVSLFTQYTPYTLAGGKAWDEQQRNTYADRVFDCIEAYAPGFKGSVVGRDILTPPDLERVFGLPGGNIFHCAMSLDQLYFARPVPLHSSYCSPLRGLYLCGSGAHPGGGVMGAAGRNAAHVVFRDLRSM", "length": 581 }, "evidence": [ { "id": "F1S8W9", "url": "https://omabrowser.org/oma/group/F1S8W9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3U4I7-1", "protein_name": "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2", "gene_name": "Pyroxd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAGGRGLIRALHSSPCPTWKRAQSGANGRLKPEYDAVVIGAGHNGLVAAAYLQRLGVNTAVFERRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQICTDLELKKHGLKLHLRDPYSFTPMLEEGTLNRLPRSLLLGTDMAANQKEISQFSRKDAQAFPRYEEFMKRLVLAIDPLLDAAPVDTTAFQHGSLLQRLRALSTLKPLLKAGRTLGAQLPQYYEVLTAPISKVLDQRFESEPLKATLATDAVIGAMTSPHTPGSGYVLLHHVMGSLEGTQGAWSYVQGGMGALSDAIASSAATRGASIFTEKTVAKVQVNSEGRAQGVTLQDGEEVRSRVVLSCASPQVTFLELTPQEWLPGAFVKRISQLDTQSPVTKINVAVDRLPNFQAAPNAPGDQPQGHHQCSIHLNCEDTLLLHQAFEDAKGGLPSQKPMIELCIPSSLDPTLAPPGCHVVSLFTQYTPYTLAGGKVWNEQEKNTYADKVFDCIEAYAPGFKRSVLARDILTPPDLERIFRLPGGNIFHGAMSLDQLYFARPVPQHSDYRCPVQGLYLCGSGAHPGGGVMGAAGRNAAHVVFRDLKNM", "length": 581 }, "evidence": [ { "id": "F1S8W9", "url": "https://omabrowser.org/oma/group/F1S8W9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q68FT3-1", "protein_name": "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2", "gene_name": "Pyroxd2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAASGRGLSRALHSTPCPAWKRVQSGANGCLKPEYDAVVIGAGHNGLVAAAYLQRLGVNTAVFERRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYTDLELKKHGLKLHLRNPYSFTPMLEEGTLSKPPRSLLLGTDVAENQKQISQFSRKDAQAFPRYEEFMKRLVLAIDPLLDAAPVDIAALQHGSLLQRLRALSTLRPLLKAGRTLGAQLPQYYEVLTAPISKVLDQWFESEPLKATLATDAVIGAMTSPHTPGSGYVLLHHVMGSLEGMQGAWSYVQGGMGALSDAIASSATAHGASIFTEKTVAKVQVNSEGRVQGVVLQGGEEVRSRVVLSCASPQVTFLELTPQEWLPGAFVKRISQLDTQSPVTKINVAVDRLPNFQAAPNAPGDQPQAHHQCSIHLNCEDTLLLHQAFEDAKGGLPSQRPMIELCIPSSLDPTLAPTGCHVVSLFTQYTPYTLAGGKVWDEQKKNTYADKVFDCIEAYAPGFKRSVLGRDILTPQDLERIFGLPGGNIFHGAMSLDQLYFARPVPQHSDYRCPVQGLYLCGSGAHPGGGVMGAAGRNAAHIVFRDLKNM", "length": 581 }, "evidence": [ { "id": "F1S8W9", "url": "https://omabrowser.org/oma/group/F1S8W9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8N2H3-1", "protein_name": "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2", "gene_name": "PYROXD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAASGRGLCKAVAASPFPAWRRDNTEARGGLKPEYDAVVIGAGHNGLVAAAYLQRLGVNTAVFERRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYTDLELKKHGLRLHLRNPYSFTPMLEEGAGSKVPRCLLLGTDMAENQKQIAQFSQKDAQVFPKYEEFMHRLALAIDPLLDAAPVDMAAFQHGSLLQRMRSLSTLKPLLKAGRILGAQLPRYYEVLTAPITKVLDQWFESEPLKATLATDAVIGAMTSPHTPGSGYVLLHHVMGGLEGMQGAWGYVQGGMGALSDAIASSATTHGASIFTEKTVAKVQVNSEGCVQGVVLEDGTEVRSKMVLSNTSPQITFLKLTPQEWLPEEFLERISQLDTRSPVTKINVAVDRLPSFLAAPNAPRGQPLPHHQCSIHLNCEDTLLLHQAFEDAMDGLPSHRPVIELCIPSSLDPTLAPPGCHVVSLFTQYMPYTLAGGKAWDEQERDAYADRVFDCIEVYAPGFKDSVVGRDILTPPDLERIFGLPGGNIFHCAMSLDQLYFARPVPLHSGYRCPLQGLYLCGSGAHPGGGVMGAAGRNAAHVAFRDLKSM", "length": 581 }, "evidence": [ { "id": "F1S8W9", "url": 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"https://www.uniprot.org/uniprotkb/F1S8W9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S8W9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 582, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S8W9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S8W9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S8W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S8W9" }, { "id": "PF01593", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01593" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Amine oxidase", "eco_id": "ECO_0000259", 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The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. 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"categories": [ "Protein Classification", "Other" ] }, { "id": "F1S8X3", "url": "https://www.uniprot.org/uniprotkb/F1S8X3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8X3-1", "url": "https://www.uniprot.org/uniprotkb/F1S8X3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRAAARGARAAALALLLGALHGAPAHGEEYDYYGWQTEPLHGRSYSKPPQCLDIPADLPLCHTVGYKRMRLPNLLEHESLAEVKQQASSWLPLLAKRCHSDTQVFLCSLFAPVCLDRPIYPCRSLCEAVRAGCAPLMEAYGFPWPEMLHCHKFPLDNDLCIAVQFGHLPATAPPVTKICAQCEMEHSADGLMEQMCSSDFVVKMRLKEIKIENGDRKLIGAQKKKKLLKPGPLKRKDTKRLVLHMKNGAGCPCPQLDSLAGSFLVMGRKVDGQLLLMAVYRWDKKNKEMKFAVKFMFSYPCSLYYPFFYGAAEPH", "length": 315, "header": "tr|F1S8X3-1|F1S8X3_PIG Isoform 1 of Secreted frizzled-related protein 5 OS=Sus scrofa OX=9823 GN=SFRP5 PE=3 SV=2 CANONICAL=F1S8X3-1" }, "isoforms": [ { "isoform_ac": "F1S8X3-1", "url": "https://www.uniprot.org/uniprotkb/F1S8X3/entry#F1S8X3-1", "sequence": { "sequence": 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norvegicus", "sequence": { "sequence": "MRVAGGARTAALALLLGALHGAPARGQEYDYYGWQTEPLHGRSYSKPPQCLDIPADLPLCHTVGYKRMRLPNLLEHESLAEVKQQASSWLPLLAKRCHSDTQVFLCSLFAPVCLDRPIYPCRSLCEAVRAGCAPLMEAYGFPWPEMLHCHKFPLDNDLCIAVQFGHLPATAPPVTKICAQCEIEHSADGLMEQMCSSDFVVKMRIKEIKIDNGDRKLIGAQKKKKLLKAGPLKRKDTKKLVLHMKNGASCPCPQLDNLTGSFLVMGRKVEGQLLLTAVYRWDKKNKEMKFAVKFMFSYPCSLYYPFFYGAAEPH", "length": 314 }, "evidence": [ { "id": "F1S8X3", "url": "https://omabrowser.org/oma/group/F1S8X3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NM64-1", "protein_name": "Secreted frizzled-related protein 5", "gene_name": "SFRP5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": 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During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.", "evidence": [ { "database": "UniProtKB", "id": "F1S8Z0", "url": "https://www.uniprot.org/uniprotkb/F1S8Z0#function" }, { "database": "UniProtKB", "id": "ARBA00059139", "url": "https://www.uniprot.org/uniprotkb/ARBA00059139#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S8Z0", "url": "https://www.uniprot.org/uniprotkb/F1S8Z0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLIT1", "url": "https://www.uniprot.org/uniprotkb/F1S8Z0", "locus": { "chromosome": "14", "start_pos": 108446004, "end_pos": 108624302, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010512", "url": "https://www.ensembl.org/id/ENSSSCG00000010512" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010512", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010512", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00110", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00110", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100627880", "url": "https://www.ncbi.nlm.nih.gov/gene/100627880", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001791", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001791", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003645", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003645", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006207", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006207", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013032", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013032", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018097", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018097", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051355", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051355", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627880", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627880", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1S8Z0", "url": "https://www.orthodb.org/?gene=F1S8Z0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45836", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45836", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45836:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45836:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00008", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00008", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01463", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01463", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12661", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12661", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020928473", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928473", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S8Z0", "url": "https://www.uniprot.org/uniprotkb/F1S8Z0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S8Z0-1", "url": "https://www.uniprot.org/uniprotkb/F1S8Z0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALTPRRGPSAGLVRPELWLLLWAAAWRLGATACPALCTCTGTTVDCHGTGLQAIPKNIPRNTERLELNGNNITRIHKNDFAGLKQLRVLQLMENQIGVVERGAFDDMKELERLRLNRNQLHTLPELLFQNNQALSRLDLSENTIQAIPRKAFRGATDLKNLQLDKNQISCIEEGAFRALRGLEVLTLNNNNISTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPASLRGLNVAEVQKSEFSCSGQGEAGRVPSCTLSSGSCPAMCACSNGIVDCRGKGLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQISEIAPDAFQGLRSLNSLVLYGNKITDLPRGVFGGLFTLQLLLLNANKINCVRPDAFQDLQNLSLLSLYDNKIQGLAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRTNPIETSGARCASPRRLANKRIGQIKSKKFRCSAKEQYFIPGTEDYQLNSECNSDVVCPHKCRCEASVVECSSLKLSKIPERIPQATAELRLNNNEISILEATGMFKKLTHLKKINLSNNKVSEIEDGAFEGAASVSELHLTANQLESIRSGMFRGLDGLRTLMLRNNRISCIHNDSFTGLRNVRLLSLYDNQIATISPGAFDTLQALSTLNLLANPFNCNCQLAWLGDWLRKRKIVTGNPRCQNPDFLRQIPLQDVAFPDFRCEEGQEEGGCLPRPQCPQECACLDTVVRCSNKHLQALPKGIPKNVTELYLDGNQFMLVPGQLSTFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNALQCIPPLAFQGLRSLRLLSLHGNDISTLQEGIFADVTSLSHLAIGANPLYCDCHLRWLSGWVKTGYKEPGIARCAGPPDMEGKLLLTTPAKKFECQGPPTLAVQAKCDPCLSSPCQNQGTCRNDPLEVYRCACPSGYKGRDCEVSLDSCSSSPCGNGGTCHSQQGEDAGFTCSCPTGFEGPICGENTDDCVEHSCANGGICVDGVGNYTCQCPPQYSGRACEQLVDFCSPDLNPCQNEAQCVGTPDGPRCECAPGYTGDNCSENQDDCRDHRCQNGAQCVDEVNGYTCVCAEGFSGQLCETPPHRPTPRSPCEGTECQNGANCVDQGNRPVCQCLPGFGGPECEKLLSVNFVDRDTYLQFTDLQNWPRANITLQVSTAEDNGILLYNGDNDHIAVELYQGHVRVSYDPGSYPSSAIYSAETINDGQFHTVELVTFDQMVNLSIDGGSPMTMDNFGKHYTLNSEAPLYVGGMPVDVNSAAFRLWQILNGSSFHGCIRNLYINNELQDFTKTRMKPGVVPGCEPCRKLYCLHGICQPNATPGPVCHCEAGWRGLNCDQPADGPCHGHKCVHGKCVPLDALSYSCQCQDGYSGALCNQAGTPADPCGGLRCLHGHCQASATKGAHCVCDPGFSGELCEQESECRGDPVRDFHQVQRGYAICQTTRPLSWVECRGSCPGQGCCQGLRLKRRKFTFECSDGTSFAEEVEKPTKCGCALCA", "length": 1534, "header": "tr|F1S8Z0-1|F1S8Z0_PIG Isoform 1 of Slit homolog 1 protein OS=Sus scrofa OX=9823 GN=SLIT1 PE=4 SV=3 CANONICAL=F1S8Z0-1" }, "isoforms": [ { "isoform_ac": "F1S8Z0-1", "url": "https://www.uniprot.org/uniprotkb/F1S8Z0/entry#F1S8Z0-1", "sequence": { "sequence": 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"length": 1534, "header": "tr|F1S8Z0-1|F1S8Z0_PIG Isoform 1 of Slit homolog 1 protein OS=Sus scrofa OX=9823 GN=SLIT1 PE=4 SV=3 CANONICAL=F1S8Z0-1" }, "locus": { "chromosome": "14", "start_pos": 108624057, "end_pos": 108449035, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011502.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011502.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011201.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011201.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1357, "start_aa": "Thr", "end_pos": 1357, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1357", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S8Z0", "url": "https://www.uniprot.org/uniprotkb/F1S8Z0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627880", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627880", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1S8Z0", "url": "https://www.uniprot.org/uniprotkb/F1S8Z0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "heparin binding", "id": "GO:0008201", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008201", "evidence": [ { "database": "UniProtKB", "id": "F1S8Z0", "url": "https://www.uniprot.org/uniprotkb/F1S8Z0" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1S8Z0", "url": "https://www.uniprot.org/uniprotkb/F1S8Z0" } ], "pmid": "" }, { "name": "Roundabout binding", "id": "GO:0048495", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048495", "evidence": [ { "database": "UniProtKB", "id": "F1S8Z0", "url": "https://www.uniprot.org/uniprotkb/F1S8Z0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "negative chemotaxis", "id": "GO:0050919", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050919", "evidence": [ { "database": "UniProtKB", "id": "F1S8Z0", "url": "https://www.uniprot.org/uniprotkb/F1S8Z0" } ], "pmid": "" }, { "name": "axon guidance", "id": "GO:0007411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007411", "evidence": [ { "database": "UniProtKB", "id": "F1S8Z0", "url": "https://www.uniprot.org/uniprotkb/F1S8Z0" } ], "pmid": "" }, { "name": "motor neuron axon guidance", "id": "GO:0008045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008045", "evidence": [ { "database": "UniProtKB", "id": "F1S8Z0", "url": "https://www.uniprot.org/uniprotkb/F1S8Z0" } ], "pmid": "" }, { "name": "axon extension involved in axon guidance", "id": "GO:0048846", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048846", "evidence": [ { "database": "UniProtKB", "id": "F1S8Z0", "url": "https://www.uniprot.org/uniprotkb/F1S8Z0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1026, "end_pos": 1028, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1079, "end_pos": 1081, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1189, "end_pos": 1191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1259, "end_pos": 1261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1306, "end_pos": 1308, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1355, "end_pos": 1357, "annotation": "n_glycosylation_sequon" }, { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" }, { "start_pos": 406, "end_pos": 408, "annotation": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11266", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11266:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11266:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04117", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04117", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003123553", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123553", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S919", "url": "https://www.uniprot.org/uniprotkb/F1S919", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S919-1", "url": "https://www.uniprot.org/uniprotkb/F1S919-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGWAAGAPVPGSQRTMASGGWRWLRSLLAAGQPLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQKFDPRRSASMFAVGCSMGPFLHYWYLWLDRLLPASGFRGLPNVLRKVLVDQVVASPMLGVWYFLGLGCLEGQTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDTYLSYLKYRVPSPLTPPGCVVLGTVQTELPPTPTRCQTGQD", "length": 235, "header": "tr|F1S919-1|F1S919_PIG Isoform 1 of MPV17 mitochondrial inner membrane protein like 2 OS=Sus scrofa OX=9823 GN=MPV17L2 PE=3 SV=2 CANONICAL=F1S919-1" }, "isoforms": [ { "isoform_ac": "F1S919-1", "url": "https://www.uniprot.org/uniprotkb/F1S919/entry#F1S919-1", "sequence": { "sequence": "MGWAAGAPVPGSQRTMASGGWRWLRSLLAAGQPLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQKFDPRRSASMFAVGCSMGPFLHYWYLWLDRLLPASGFRGLPNVLRKVLVDQVVASPMLGVWYFLGLGCLEGQTLDESCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDTYLSYLKYRVPSPLTPPGCVVLGTVQTELPPTPTRCQTGQD", "length": 235, "header": "tr|F1S919-1|F1S919_PIG Isoform 1 of MPV17 mitochondrial inner membrane protein like 2 OS=Sus scrofa OX=9823 GN=MPV17L2 PE=3 SV=2 CANONICAL=F1S919-1" }, "locus": { "chromosome": "2", "start_pos": 59612912, "end_pos": 59610246, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015182.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015182.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014776.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014776.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 209, "start_aa": "Thr", "end_pos": 209, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr209", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S919", "url": "https://www.uniprot.org/uniprotkb/F1S919" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519592", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519592", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A5D787-1", "protein_name": "Mpv17-like protein 2", "gene_name": "MPV17L2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPPGGWRWLRGLWAAGQPLFQGRALLVTNTLGCGVLMAAGDGARQTWEIRARPGQKFDPRRSVSMFAVGCSMGPFLHYWYLWLDRLFPASGFPGLPNVLKKVLIDQLVASPMLGVWYFLGLGCLEGQTLDKSCQELRDKFWEFYKADWCVWPAAQLVNFLFVPPQFRVTYINGLTLGWDTYLSYLKYRIPGPLTPPGCVALGTIQTEPPDARQQGKTD", "length": 218 }, "evidence": [ { "id": "F1S919", "url": "https://omabrowser.org/oma/group/F1S919/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A9N8-1", "protein_name": "MPV17 mitochondrial inner membrane protein like 2", "gene_name": "Mpv17l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAGGWRWARKALAAGRPLFQGRALLVTNTLGCGVLMATGDGARQAWEVRARPEQRFSARRSASMFAVGCSMGPFLHFWYLWLDRLLPASGLRSLPSVMKKVLVDQTVASPILGVWYFLGLGSLEGQTLEESCQELRAKFWDFYKADWCVWPAAQLVNFLFIPSHFRVTYINGLTLGWDTYLSYLKYWAPEPLQTPGCAD", "length": 200 }, "evidence": [ { "id": "F1S919", "url": "https://omabrowser.org/oma/group/F1S919/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q06563-1", "protein_name": "Protein SYM1", "gene_name": "SYM1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MKLLHLYEASLKRRPKTTNAIMTGALFGIGDVSAQLLFPTSKVNKGYDYKRTARAVIYGSLIFSFIGDKWYKILNNKIYMRNRPQYHWSNMVLRVAVDQLAFAPLGLPFYFTCMSIMEGRSFDVAKLKIKEQWWPTLLTNWAVWPLFQAINFSVVPLQHRLLAVNVVAIFWNTYLSYKNSKVMEKDKVPVHYPPVVE", "length": 197 }, "evidence": [ { "id": "F1S919", "url": "https://omabrowser.org/oma/group/F1S919/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q567V2-1", "protein_name": "Mpv17-like protein 2", "gene_name": "MPV17L2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARGGWRRLRRLLSAGQLLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQVFDPRRSASMFAVGCSMGPFLHYWYLSLDRLFPASGLRGFPNVLKKVLVDQLVASPLLGVWYFLGLGCLEGQTVGESCQELREKFWEFYKADWCVWPAAQFVNFLFVPPQFRVTYINGLTLGWDTYLSYLKYRSPVPLTPPGCVALDTRAD", "length": 206 }, "evidence": [ { "id": "F1S919", "url": "https://omabrowser.org/oma/group/F1S919/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6DGV7-1", "protein_name": "Mpv17-like protein 2", "gene_name": "mpv17l2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MISRQGKEFLVRIAGYWKPLFRGRFLIVTNTVSCGGMLAAGDLIQQTREIRRTPGRTRDWSRTGCMFAVGCSMGPFMHYWYQWLDKYFIGNGINNVCKKVLVDQLVASPTLGAWYFLGMGMMEGHTFIEAQQEFRDKFWEFYKADWCVWPAAQMINFYFLPPKFRVLYVNIVTLGWDTYLSYLKHRDTVEVTKEADGTA", "length": 199 }, "evidence": [ { "id": "F1S919", "url": "https://omabrowser.org/oma/group/F1S919/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8VIK2-1", "protein_name": 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"Protein" ] } ], "sequence": { "sequence": "MDLKNGSVVTEFILVGFSVGWELQFVFLVTFSLIYGATVLGNVLIMVTVTFSSTLHSPMYFLLGNLSFLDMCLSTVTTPKMIRDLLTEHKVISMWGCMAQMFFMHCFGGAEMTLLIVMAFDRYVAICKPLHYRTIMSHKLLKGFVILSWTIGFIHTMSQMVLTVNLPFCGPHIIDNIFCDLPLVIKLACMDTYTLELFIIADSGLLSFICFLLLLVSYTVILVTVQQRSSGGLSKALSTLSAHITVVTLFFGPCIFIYAWPFSSFAGNKILAVFYTVITPLLNPIIYTLRNEKMQEAMRKLWFQNASSTQNF", "length": 312, "header": "tr|F1S930-1|F1S930_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=F1S930-1" }, "isoforms": [ { "isoform_ac": "F1S930-1", "url": "https://www.uniprot.org/uniprotkb/F1S930/entry#F1S930-1", "sequence": { "sequence": "MDLKNGSVVTEFILVGFSVGWELQFVFLVTFSLIYGATVLGNVLIMVTVTFSSTLHSPMYFLLGNLSFLDMCLSTVTTPKMIRDLLTEHKVISMWGCMAQMFFMHCFGGAEMTLLIVMAFDRYVAICKPLHYRTIMSHKLLKGFVILSWTIGFIHTMSQMVLTVNLPFCGPHIIDNIFCDLPLVIKLACMDTYTLELFIIADSGLLSFICFLLLLVSYTVILVTVQQRSSGGLSKALSTLSAHITVVTLFFGPCIFIYAWPFSSFAGNKILAVFYTVITPLLNPIIYTLRNEKMQEAMRKLWFQNASSTQNF", "length": 312, "header": "tr|F1S930-1|F1S930_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=F1S930-1" }, "locus": { "chromosome": "7", "start_pos": 79424951, "end_pos": 79424016, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002871.3", "url": "https://www.ensembl.org/id/ENSSSCT00000002871.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002794.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002794.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S930", "url": "https://www.uniprot.org/uniprotkb/F1S930" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513411", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513411", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZSI0-1", "protein_name": "Olfactory receptor", "gene_name": "Or4l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDYKNGSAVTEFILVGFSGDWQLQTFFFVTFTLIYGTTVVGNILIIVTVAATSTLHSPMYFLLGNLSFLDMCLSTVTTPKMITDLLAARKSISFQGCMAQMFFMHFFGGAEMTLLIVMAFDRYVAICKPLHYRIIMSHRLLNRCIILSWTIGFIHTMSQMALTVNLPFCGHNIINNIFCDLPLVIKLACIETYTLELFVIADSGLLSFICFILLLVSYTVILVIVKHKSPGSLSKALSTLSAHIIVVTLFFGPCIFIYAWPFGSFASNTTLAVFYTVITPLLNPIIYTLRNREMKKAMRKLWIQHVSCT", "length": 309 }, "evidence": [ { "id": "F1S930", "url": "https://omabrowser.org/oma/group/F1S930/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9PZU2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDYENGSAVTEFILVGFSGNWQLQIFFFVTFTLIYGATVVGNILIIVTVAANSALHSPMYFLLGNLSFLDMCLSTVTTPKMISDLLAAHKSISFQGCMAQMFFMHFFGGAEMTLLIVMAFDRYVAICKPLHYRIIMSHKLLNRFIILSWTIGFIHTMSQMALTVNLPFCGHNIINNIFCDLPLVIKLACIETYTLELFVIADSGLLSFISFFLLLVSYTVILLIVKHKSPGSLSKALSTLSAHIIVVTLFFGPCIFIYAWPFGSFASNTTLAVFYTVITPLLNPIIYTLRNQEMKKAMRKLWIQQVSCT", "length": 309 }, "evidence": [ { "id": "F1S930", "url": "https://omabrowser.org/oma/group/F1S930/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3MWY1-1", "protein_name": "Olfactory receptor", "gene_name": "OR4L1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDLKNGSVVTEFILQGFSAAWELQIVFFVTFSLIYGATVLGNALIMVTVTCSSTLHSPMYFLLGNLSFLDMCLSTVTTPKMIRDLLTEHKTISIWGCMAQMFFMHLFGGVEMTLLIAMAFDRYVAVCKPLHYRKIMNHRLLNRFVILSWTIGFTHTMSQMVLTVNLPFCGPHIIDNIFCDLPLVIKLACVETYTLELFVIADSGLLSLICFLLLLVSYTVILATVQRRSSGGLSKALSTLSAHITVVSLFFGPCIFIYAWPFKSFASNKVLAVFYTVITPLLNPIIYTLRNQKMQEAMKKLRFQNVSST", "length": 309 }, "evidence": [ { "id": "F1S930", "url": "https://omabrowser.org/oma/group/F1S930/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8NH43-1", "protein_name": "Olfactory receptor 4L1", "gene_name": "OR4L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDLKNGSLVTEFILLGFFGRWELQIFFFVTFSLIYGATVMGNILIMVTVTCRSTLHSPLYFLLGNLSFLDMCLSTATTPKMIIDLLTDHKTISVWGCVTQMFFMHFFGGAEMTLLIIMAFDRYVAICKPLHYRTIMSHKLLKGFAILSWIIGFLHSISQIVLTMNLPFCGHNVINNIFCDLPLVIKLACIETYTLELFVIADSGLLSFTCFILLLVSYIVILVSVPKKSSHGLSKALSTLSAHIIVVTLFFGPCIFIYVWPFSSLASNKTLAVFYTVITPLLNPSIYTLRNKKMQEAIRKLRFQYVSSAQNF", "length": 312 }, "evidence": [ { "id": "F1S930", "url": "https://omabrowser.org/oma/group/F1S930/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1S930", "url": "https://www.uniprot.org/uniprotkb/F1S930" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1S930", "url": "https://www.uniprot.org/uniprotkb/F1S930" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S930", "url": "https://www.uniprot.org/uniprotkb/F1S930" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 305, "end_pos": 307, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S930-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 312, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S930-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S930" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S930", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S930" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 287, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 305, "end_pos": 307 }, { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "F1S931-1", "uniprot_ac": "F1S931", "uniprot_id": "F1S931_PIG", "mass": { "chemical_mass": 33994.0, "monoisotopic_mass": 33994.0 }, "refseq": { "ac": "XP_020937469", "name": "olfactory receptor 4K3-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937469" }, "gene_names": [ { "name": "LOC110258557", "type": "recommended", "evidence": [ { "id": "F1S931", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S931" } ] }, { "name": "LOC110258557", "type": "synonym", "evidence": [ { "id": "XP_020937469", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937469" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1S931", "database": "UniProtKB", "url": 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"https://www.ebi.ac.uk/interpro/entry/IPR050427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110258557", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110258557", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HIMVIVI", "url": "https://omabrowser.org/oma/group/HIMVIVI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S931", "url": "https://www.orthodb.org/?gene=F1S931", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020937469", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937469", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S931", "url": "https://www.uniprot.org/uniprotkb/F1S931", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S931-1", "url": "https://www.uniprot.org/uniprotkb/F1S931-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEVNQTVVSEFILLGLCDTWELQAFLLLVFPLLYLITILGNNFTVLLIISDLHLHSPMYFLLANLSFIDFCLSTVITPKMITDFLKEHKTISFGGCMCQIFFGHFLGGSEMVLLVLMAYDRYVAICKPLHYSSIMNKQMCIWLVMTSWITGFVHSISQLAIIIKLPFCGPRELDSFFCDIPLVIKLACMDTYILEKLINADSGVLATTCFTLLLISYTYILLTVCHQSKDGASKALSTCTAHITVVVLFFGPCIFIYLCPLGITWVDKFLAVFYAVITPLLNPAIYTLRNKEIKIAIKRL", "length": 301, "header": "tr|F1S931-1|F1S931_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110258557 PE=3 SV=2 CANONICAL=F1S931-1" }, "isoforms": [ { "isoform_ac": "F1S931-1", "url": "https://www.uniprot.org/uniprotkb/F1S931/entry#F1S931-1", "sequence": { "sequence": 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T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S982", "url": "https://www.uniprot.org/uniprotkb/F1S982" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-6807878", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "resource": "Reactome", "description": "COPI-mediated anterograde transport" }, { "id": "R-SSC-6811434", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811434", "resource": "Reactome", "description": "COPI-dependent Golgi-to-ER retrograde traffic" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MCC1-1", "protein_name": "Coatomer subunit beta", "gene_name": "Copb1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDFLVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPSERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLIVLDRLVELKEHPAHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVLKKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDSNEAAAADVLEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVESEIKKEAGELKPEEEITVGPVQKLVTEMGTYATQSALSSSRPTKKEEDRPPLRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSQMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAKNEMNCKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMIDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKKTSL", "length": 953 }, "evidence": [ { "id": "F1S982", "url": "https://omabrowser.org/oma/group/F1S982/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0JN39-1", "protein_name": "Coatomer subunit beta", "gene_name": "COPB1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDFLVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPSERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLIVLDRLIELKEHPAHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVLKKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDSNEAAAADVLEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKDDIQSVMTEVRRSLGEIPIVESEIKKEAGELKPEEEITVGPVQKLVTEMGTYATQSALSSSRPTKKEEERPPLRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAKNEMNCKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNIVDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPIQQGPEAPVTGHIRIRAKSQGMALSLGDKINLSQKKNSI", "length": 953 }, "evidence": [ { "id": "F1S982", "url": "https://omabrowser.org/oma/group/F1S982/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P23514-1", "protein_name": "Coatomer subunit beta", "gene_name": "Copb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFENLIPDAPELIHDFLVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPSERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLIVLDRLVELKEHPAHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVLKKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDSNEAAAADVLEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVESEIKKEAGELKPEEEITVGPVQKLVTEMGTYATQSALSSSRPTKKEEDRPPLRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSQMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAKNEMNCKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNVTDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKKTSL", "length": 953 }, "evidence": [ { "id": "F1S982", "url": "https://omabrowser.org/oma/group/F1S982/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P41810-1", "protein_name": "Coatomer subunit beta", "gene_name": "SEC26", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTSLSSQPAYTLVFDPSPSMETYSSTDFQKALEKGSDEQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVPKLAEDGKLRHEMILVCNAIQHDLQHPNEYIRGNTLRFLTKLREAELLEQMVPSVLACLEYRHAYVRKYAILAVFSIFKVSEHLLPDAKEIINSFIVAETDPICKRNAFIGLAELDRENALHYLENNIADIENLDPLLQAVFVQFIRQDANRTPALKAQYIELLMELLSTTTSDEVIFETALALTVLSANPNVLVPAVNKLIDLAVKVSDNNIKLIVLDRIQDINANNVGALEELTLDILRVLNAEDLDVRSKALDISMDLATSRNAEDVVQLLKKELQTTVNNPDQDKAMQYRQLLIKTIRTVAVNFVEMAASVVSLLLDFIGDLNSVAASGIIAFIKEVIEKYPQLRANILENMVQTLDKVRSAKAYRGALWIMGEYAEGESEIQHCWKHIRNSVGEVPILQSEIKKLTQNQEHTEENEVDATAKPTGPVILPDGTYATESAFDVKTSQKSVTDEERDSRPPIRRFVLSGDFYTAAILANTIIKLVLKFENVSKNKTVINALKAEALLILVSIVRVGQSSLVEKKIDEDSLERVMTSISILLDEVNPEEKKEEVKLLEVAFLDTTKSSFKRQIEIAKKNKHKRALKDSCKNIEPIDTPISFRQFAGVDSTNVQKDSIEEDLQLAMKGDAIHATSSSSISKLKKIVPLCGFSDPVYAEACITNNQFDVVLDVLLVNQTKETLKNLHVQFATLGDLKIIDTPQKTNVIPHGFHKFTVTVKVSSADTGVIFGNIIYDGAHGEDARYVILNDVHVDIMDYIKPATADDEHFRTMWNAFEWENKISVKSQLPTLHAYLRELVKGTNMGILTPSESLGEDDCRFLSCNLYAKSSFGEDALANLCIEKDSKTNDVIGYVRIRSKGQGLALSLGDRVALIAKKTNKLALTHV", "length": 973 }, "evidence": [ { "id": "F1S982", "url": "https://omabrowser.org/oma/group/F1S982/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P45437-1", "protein_name": "Coatomer subunit beta", "gene_name": "betaCOP", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTSQVPCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVLPVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVCDAYRKDLQHPNEFLRGSTLRFLCKLKEPELLEPLMPAIRACLDHRHSYVRRNAVLAIFTIYKNFDWLVPDGPELIASFLDTQQDMSCKRNAFLMLLHADQERALNYLASCIDQVHTFGDILQLVIVELIYKVCHANPAERSRFIRCIYNLLNSSSNAVRYESAGTLITLSLAPTAIKAAASCYIELVVKESDNNVKLIVLDRLVAMKEHEGMEKVMQDLVMDVLRVLAAPDIEVRRKTLALALDLVYSRNIGEMVLVLKKEVAKTHNVEHEDTGKYRQLLVRTLHTCSIKFPDVAANVIPVLVEFLSDTNELAAADVLIFIREAIQKFPALRALIIEHLIEAFPQIKSSKIHRAAVWILGEYVEGSQILEVIAVIQQTLGEVPMVEAEQRRLAGDQTEEQKQQQGSAGGNAAGSAAEGSGSGNASNKVTSDGTYATQSAYSLAPVAKAEKRPPLRQYLMDGDFFIGAALSATLTKLALRYAELETEARAQNRLTTQVMLIMSSILHLGKSGFPSKPITNDDTDRIFVCLRTLSERTPEAISVFTLYCREALGKMLDAQHDEDQRMLKEKQKATAKVQPDDPVLFAQLSNGRDNQLGENVFESSLNQALAGSKNAQLSDVASPNSKLNKVTQLTGFSDPVYAEAYVNVNQYDIVLDVLIVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNIVYETALNTNVVVLNTIHIDIMDYIIPASCTDTEFRQMWQDFEWENKVTVNTSFTDLHEYLKHLLKSTNMKCLTPEKALSGQCGFMAANMYAKSIFGENALANLSIEKPVDDPDSKVTGHIRIRAKSQGMALSLGDKISSSQKQSVQAA", "length": 964 }, "evidence": [ { "id": "F1S982", "url": "https://omabrowser.org/oma/group/F1S982/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "P53618-1", "protein_name": "Coatomer subunit beta", "gene_name": "COPB1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDFLVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPSERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLIVLDRLIELKEHPAHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVLKKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDNNEAAAADVLEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEIRRSLGEIPIVESEIKKEAGELKPEEEITVGPVQKLVTEMGTYATQSALSSSRPTKKEEDRPPLRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAKNEMNCKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMVDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPIHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKKTSI", "length": 953 }, "evidence": [ { "id": "F1S982", "url": "https://omabrowser.org/oma/group/F1S982/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q23924-1", "protein_name": "Coatomer subunit beta", "gene_name": "copb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSALTQSGSIEKPCTILINYDKGDPPQVNEFKQNFEHGTTEQKIETLKKVILYTINGEPIPQLLMPIILYVMPSNDHTIKKLLLIYWEVIEKTHLGKLKSEMILVCNSLLNDLNHPNEFVRGSTLRFLCKLREAEVLEPLVPSVRSNLENRHAYCRRNAVLAIYNIYSHFDYLIPDAPELIYNFLLQEKDASCKRNAFIMLFNCAPEKAVEYLSSVLDEVPSFGDMLQFIVVELIRKVCKTSPSERSKYIKCIFTLLNSSSPAVKYESAGTLLSLSSAPTAVRGAASAYIDLLCNESDNNVKMIVLDKLIEIKKNHSKIMEELVMDILRALSSPNIDICKKVLNIVLDSVTPKNIDEIILFLKKEINKTQSKEFDKGLEYRHILIRTIHVSSLKYPEVLGNVVPLLMEYLGDSYLPSAVDVVIFLREVVETYPSLRELIIKKLIENLSSIKVSKVYRVAVWVIAEYVTCLEDLQYAMTSITNDLEELLKPKQTEEVILETKAKVKIEKVSIQKLIADGDWYLASCISSSLTKLFFRAEQLNIDNADSNKLKAQVMMIISVLINLSKASQVSTSKSAYERMLSCIQVLIDSNATIKKIWLQDCRDSFANYLKYLLIKQSENKKKTEKEVLVKPNNIINIRQLKSKKAFGPVDTEDDLIKAVGNTGEANKDQNEYSKISQLSGFSDPIYVEAYVRVHQYDIVLDISVFNQTNDTLQNVTLELVTLGDLKICERVPPFTMAPREKTSAKASIKVSSTDNGVIMGTIAFDIAGSVSSMSDKNCVILNELHIDVIDYILPANHQYTDVLFRNHWLEFEWENKIPVNTNITDLVKYVHHISKVTNMGILTPEVHLSNDTGILSANLCAKSVFGEDALANICIEKQADGKISGYIRIRAKVQSIAVTLGEKIGNMGMKA", "length": 912 }, "evidence": [ { "id": "F1S982", "url": "https://omabrowser.org/oma/group/F1S982/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5ZIA5-1", "protein_name": "Coatomer subunit beta", "gene_name": "COPB1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKLKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLQEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDFLVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPSERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLIVLDRLVELKEHPSHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVLKKEVIKTNNVTEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDNNEAAAADVLEFVREAIQRFDNLRPLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVESEIKKEAGELKPEEEVTVGPVQKLVTEMGTYATQSALSSSRPTKKEEDRPPLRGFLLDGDFFVAASLATTLTKIALRYVSLVQEKKKQNSFIAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAKNEMSSKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDAEFRQMWAEFEWENKVTVNTNIIDLNEYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPIHLGPEAPVTGHIRIRAKSQGMALSLGDKINLSQKKTSL", "length": 953 }, "evidence": [ { "id": "F1S982", "url": "https://omabrowser.org/oma/group/F1S982/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q66HV4-1", "protein_name": "Coatomer subunit beta", "gene_name": "copb1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTAAENVCYTLINVTNDSEPPSEVSLKTDLEKGEIKAKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGKLLQEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKESELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDFLVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVHTFGDILQLVIVELIYKVCHANPSERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLIVLDRLIELKEHPTHERVLQDLVMDILRVLTTPDLEVRKKTLQLALDLVSSRNVEELVIVLKKEVIKTNNVTEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDTNEAAAADVLEFVREAIQRFDNLRPLIIEKMLEVFHAIKTVKIYRGALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVENELKKEAGEVKPEEEVTAAPAPKLVTEMGTYVTQSALSTSRPSKKEEDRPPLRGFLMDGDFYVAASLATTLTKVALRYVALAEDKRRQNSFVAEAMLIMATVLHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRRSLSHMLAVRLEEEKLSQKKESEKRNVTVQADDPISFMQLTAKNEMASKEDQFQLSLLAAMGNTQRKEATDPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDAEFRQMWAEFEWENKVTVNTNITDLNDYLLHILKSTNMKCLTPEKALSGICGFMAANLYARSIFGEDALANVSIEKPIHLGVDAPVNGHIRIRAKSQGMALSLGDKINLSQKRTAS", "length": 953 }, "evidence": [ { "id": "F1S982", "url": "https://omabrowser.org/oma/group/F1S982/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9JIF7-1", "protein_name": "Coatomer subunit beta", "gene_name": "Copb1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDFLVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPSERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLIVLDRLVELKEHPAHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVLKKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDSNEAAAADVLEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVESEIKKEAGELKPEEEITVGPVQKLVTEMGTYATQSALSSSRPTKKEEDRPPLRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSQMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAKNEMNCKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMTDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKKTSL", "length": 953 }, "evidence": [ { "id": "F1S982", "url": "https://omabrowser.org/oma/group/F1S982/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SV21-1", "protein_name": "Coatomer subunit beta-1", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDKSSTMLVHYDKGTPAVANEIKEALEGNDVEAKVDAMKKAIMLLLNGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRMKETEIVEPLTPSVLQNLEHRHPFVRRNAILAIMSIYKLPQGDQLFVDAPEMIEKVLSTEQDPSAKRNAFLMLFTCAEERAVNYLLSNVDKVSDWNESLQMVVLELIRSVCKTKPAEKGKYIKIIISLLSATSSAVIYECAGTLVSLSSAPTAIRAAANTYCQLLLSQSDNNVKLILLDRLYELKTLHRDIMVELIIDVLRALSSPNLDIRRKTLDISLDLITHHNINEVVQMLKKEVVKTQSGELEKNGEYRQMLIQAIHACAVKFPEVASTVVHLLMDFLGDSNVASALDVVVFVREIIETNPKLRVSIITRLLDTFYQIRAGKVCPCALWIIGEYCLSLSEVESGISTITQCLGELPFYSVSEESEPTETSKKIQPTSSAMVSSRKPVILADGTYATQSAASETTFSSPTVVQGSLTSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKTEVNKTVTQALLIMVSMLQLGQSPVSPHPIDNDSYERIVLCIKLLCHRNDEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTHAQPDDLIDFFHLKSRKGMSQLELEDQVQDDLKRATGEFTKDENDANKLNRILQLTGFSDPVYAEAYVTVHHYDIALEVTVINRTKETLQNLCLELATMGDLKLVERPQNYSLAPERSMQIKANIKVSSTETGVIFGNIVYETSNVMERNVVVLNDIHIDIMDYISPAVCSEVAFRTMWAEFEWENKVAVNTTIQNEREFLDHIIKSTNMKCLTAPSAIEGECGFLAANLYAKSVFGEDALVNVSIEKQTDGALSGYIRIRSKTQGIALSLGDKITLKQKGSS", "length": 948 }, "evidence": [ { "id": "F1S982", 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"intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "F1S982", "url": "https://www.uniprot.org/uniprotkb/F1S982" } ], "pmid": "" }, { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "F1S982", "url": "https://www.uniprot.org/uniprotkb/F1S982" } ], "pmid": "" }, { "name": "intra-Golgi vesicle-mediated transport", "id": "GO:0006891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006891", "evidence": [ { "database": "UniProtKB", "id": "F1S982", "url": "https://www.uniprot.org/uniprotkb/F1S982" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural molecule activity", "id": "GO:0005198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005198", "evidence": [ { "database": "UniProtKB", "id": "F1S982", "url": "https://www.uniprot.org/uniprotkb/F1S982" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 369, "end_pos": 371, "annotation": "n_glycosylation_sequon" }, { "start_pos": 662, "end_pos": 664, "annotation": "n_glycosylation_sequon" }, { "start_pos": 747, "end_pos": 749, "annotation": "n_glycosylation_sequon" }, { "start_pos": 755, "end_pos": 757, "annotation": "n_glycosylation_sequon" }, { "start_pos": 908, "end_pos": 910, "annotation": "n_glycosylation_sequon" }, { "start_pos": 945, "end_pos": 947, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S982", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S982" }, { "id": "PF01602", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01602" } ], "ann_type": 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