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Impaired affinity for both cofactors and decreased catalytic efficiency; when associated with G-200.", "evidence": [ { "database": "UniProtKB", "id": "Q70DU8", "url": "https://www.uniprot.org/uniprotkb/Q70DU8" }, { "database": "PubMed", "id": "24463048", "url": "https://glygen.org/publication/PubMed/24463048" } ] }, { "sequence_org": "E", "sequence_mut": "Q", "comment": "Loss of specificity for NAD(+) and loss of 25% efficiency. 15% efficiency with NAD(+); when associated with V-200. Impaired affinity for both cofactors and decreased catalytic efficiency; when associated with G-200.", "evidence": [ { "database": "UniProtKB", "id": "Q70DU8", "url": "https://www.uniprot.org/uniprotkb/Q70DU8" }, { "database": "PubMed", "id": "24463048", "url": "https://glygen.org/publication/PubMed/24463048" } ] }, { "sequence_org": "E", "sequence_mut": "T", "comment": "Loss of specificity and increased NADP(+) binding. Decreased catalytic efficiency. Loss of cofactor specificity and same lower efficiency with both; when associated with V-200. Impaired affinity for both cofactors and decreased catalytic efficiency; when associated with G-200. Changed coenzyme preference from NAD(+) to NADP(+), but no effect on the catalytic efficiency; when associated with R-178 and V-200.", "evidence": [ { "database": "UniProtKB", "id": "Q70DU8", "url": "https://www.uniprot.org/uniprotkb/Q70DU8" }, { "database": "PubMed", "id": "24463048", "url": "https://glygen.org/publication/PubMed/24463048" } ] } ] }, { "uniprot_canonical_ac": "Q70DU8-1", "start_pos": "178", "end_pos": "178", "site_lbl": "Val178", "weight": 0.0, "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "R", "comment": "Changed coenzyme preference from NAD(+) to NADP(+), but no effect on the catalytic efficiency; when associated with T-149 and V-200.", "evidence": [ { "database": "UniProtKB", "id": "Q70DU8", "url": "https://www.uniprot.org/uniprotkb/Q70DU8" }, { "database": "PubMed", "id": "24463048", "url": "https://glygen.org/publication/PubMed/24463048" } ] } ] }, { "uniprot_canonical_ac": "Q70DU8-1", "start_pos": "200", "end_pos": "200", "site_lbl": "Ile200", "weight": 0.0, "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "G", "comment": "Changed coenzyme preference from NAD(+) to NADP(+), but impaired affinities for both cofactors. No effect on the interaction with the substrate. Impaired affinities for both cofactors and decreased catalytic efficiencies; when associated with D-149, Q-149, N-149 or T-149.", "evidence": [ { "database": "UniProtKB", "id": "Q70DU8", "url": "https://www.uniprot.org/uniprotkb/Q70DU8" }, { "database": "PubMed", "id": "24463048", "url": "https://glygen.org/publication/PubMed/24463048" }, { "database": "PubMed", "id": "21166653", "url": "https://glygen.org/publication/PubMed/21166653" } ] }, { "sequence_org": "I", "sequence_mut": "V", "comment": "Also able to use NADP(+) as coenzyme, but no effect on the interaction with the substrate. 15% efficiency with NAD(+); when associated with Q-149. 70% loss of efficiency with NAD(+); when associated with D-149 or N-149. Loss of cofactor specificity and same lower efficiency with both; when associated with T-149. Changed coenzyme preference from NAD(+) to NADP(+), but no effect on the catalytic efficiency; when associated with T-149 and R-178.", "evidence": [ { "database": "UniProtKB", "id": "Q70DU8", "url": "https://www.uniprot.org/uniprotkb/Q70DU8" }, { "database": "PubMed", "id": "24463048", "url": "https://glygen.org/publication/PubMed/24463048" }, { "database": "PubMed", "id": "21166653", "url": "https://glygen.org/publication/PubMed/21166653" } ] } ] }, { "uniprot_canonical_ac": "Q70DU8-1", "start_pos": "247", "end_pos": "247", "site_lbl": "Cys247", "weight": 0.0, "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "No effect on solubility, but 10% loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q70DU8", "url": "https://www.uniprot.org/uniprotkb/Q70DU8" }, { "database": "PubMed", "id": "21166653", "url": "https://glygen.org/publication/PubMed/21166653" } ] } ] }, { "uniprot_canonical_ac": "Q70DU8-1", "start_pos": "253", "end_pos": "253", "site_lbl": "Cys253", "weight": 0.0, "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "No effect on solubility, but loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q70DU8", "url": "https://www.uniprot.org/uniprotkb/Q70DU8" }, { "database": "PubMed", "id": "21166653", "url": "https://glygen.org/publication/PubMed/21166653" } ] } ] }, { "uniprot_canonical_ac": "Q70DU8-1", "start_pos": "45", "end_pos": "45", "site_lbl": "Cys45", "weight": 0.0, "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Decreased solubility, loss of dimerization and strongly decreased activity.", "evidence": [ { "database": "UniProtKB", "id": "Q70DU8", "url": "https://www.uniprot.org/uniprotkb/Q70DU8" }, { "database": "PubMed", "id": "21166653", "url": "https://glygen.org/publication/PubMed/21166653" } ] } ] } ], "record_id": "batch.arabidopsis.19" }, { "uniprot_canonical_ac": "Q71DJ5-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q71DJ5", "url": "https://www.uniprot.org/uniprotkb/Q71DJ5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "length": 393, "chemical_mass": 44231.0, "gene_names": "LIP1;ATLIP1;F15A23.3;F15A23_3;LIP1;lipase 1", "protein_name": "Triacylglycerol lipase 1", "disease": [], "cellular_component": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "Q71DJ5", "url": "https://www.uniprot.org/uniprotkb/Q71DJ5" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "Q71DJ5", "url": "https://www.uniprot.org/uniprotkb/Q71DJ5" } ], "pmid": "" } ], "biological_process": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "Q71DJ5", "url": "https://www.uniprot.org/uniprotkb/Q71DJ5" } ], "pmid": "" }, { "name": "lipid catabolic process", "id": "GO:0016042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016042", "evidence": [ { "database": "UniProtKB", "id": "Q71DJ5", "url": "https://www.uniprot.org/uniprotkb/Q71DJ5" } ], "pmid": "" }, { "name": "glycerolipid metabolic process", "id": "GO:0046486", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046486", "evidence": [ { "database": "UniProtKB", "id": "Q71DJ5", "url": "https://www.uniprot.org/uniprotkb/Q71DJ5" } ], "pmid": "" }, { "name": "gibberellic acid mediated signaling pathway", "id": "GO:0009740", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009740", "evidence": [ { "database": "UniProtKB", "id": "Q71DJ5", "url": "https://www.uniprot.org/uniprotkb/Q71DJ5" } ], "pmid": "" }, { "name": "response to gibberellin", "id": "GO:0009739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009739", "evidence": [ { "database": "UniProtKB", "id": "Q71DJ5", "url": "https://www.uniprot.org/uniprotkb/Q71DJ5" } ], "pmid": "" }, { "name": "regulation of seed germination", "id": "GO:0010029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010029", "evidence": [ { "database": "UniProtKB", "id": "Q71DJ5", "url": "https://www.uniprot.org/uniprotkb/Q71DJ5" } ], "pmid": "" }, { "name": "regulation of seed dormancy process", "id": "GO:2000033", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000033", "evidence": [ { "database": "UniProtKB", "id": "Q71DJ5", "url": "https://www.uniprot.org/uniprotkb/Q71DJ5" } ], "pmid": "" } ], "molecular_function": [ { "name": "lipase activity", "id": "GO:0016298", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016298", "evidence": [ { "database": "UniProtKB", "id": "Q71DJ5", "url": "https://www.uniprot.org/uniprotkb/Q71DJ5" } ], "pmid": "" }, { "name": "triacylglycerol lipase activity", "id": "GO:0004806", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004806", "evidence": [ { "database": "UniProtKB", "id": "Q71DJ5", "url": "https://www.uniprot.org/uniprotkb/Q71DJ5" } ], "pmid": "" } ], "binding_glycans": [], "biomarkers": [], "sites": [ { "uniprot_canonical_ac": "Q71DJ5-1", "start_pos": "261", "end_pos": "261", "site_lbl": "Asn261", "weight": 0.0, "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 261, "start_aa": "Asn", "end_pos": 261, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn261", "evidence": [ { "id": "Q71DJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q71DJ5#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ] }, { "uniprot_canonical_ac": "Q71DJ5-1", "start_pos": "41", "end_pos": "41", "site_lbl": "Asn41", "weight": 0.0, "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 41, "start_aa": "Asn", "end_pos": 41, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn41", "evidence": [ { "id": "Q71DJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q71DJ5#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ] } ], "record_id": "batch.arabidopsis.19" }, { "uniprot_canonical_ac": "Q76FS5-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q76FS5", "url": "https://www.uniprot.org/uniprotkb/Q76FS5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "length": 417, "chemical_mass": 46045.0, "gene_names": "SPS2;AtSPS2;F20D23.25;F20D23_25;SPPS;SPS2;solanesyl diphosphate synthase 2", "protein_name": "Solanesyl diphosphate synthase 2, chloroplastic", "disease": [], "molecular_function": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "Q76FS5", "url": "https://www.uniprot.org/uniprotkb/Q76FS5" } ], "pmid": "" }, { "name": "prenyltransferase activity", "id": "GO:0004659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004659", "evidence": [ { "database": "UniProtKB", "id": "Q76FS5", "url": "https://www.uniprot.org/uniprotkb/Q76FS5" } ], "pmid": "" }, { "name": "all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity", "id": "GO:0052924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052924", "evidence": [ { "database": "UniProtKB", "id": "Q76FS5", "url": "https://www.uniprot.org/uniprotkb/Q76FS5" } ], "pmid": "" } ], "biological_process": [ { "name": "isoprenoid biosynthetic process", "id": "GO:0008299", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008299", "evidence": [ { "database": "UniProtKB", "id": "Q76FS5", "url": "https://www.uniprot.org/uniprotkb/Q76FS5" } ], "pmid": "" }, { "name": "plastoquinone biosynthetic process", "id": "GO:0010236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010236", "evidence": [ { "database": "UniProtKB", "id": "Q76FS5", "url": "https://www.uniprot.org/uniprotkb/Q76FS5" } ], "pmid": "" } ], "cellular_component": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q76FS5", "url": "https://www.uniprot.org/uniprotkb/Q76FS5" } ], "pmid": "" }, { "name": "plastid", "id": "GO:0009536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009536", "evidence": [ { "database": "UniProtKB", "id": "Q76FS5", "url": "https://www.uniprot.org/uniprotkb/Q76FS5" } ], "pmid": "" }, { "name": "chloroplast stroma", "id": "GO:0009570", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009570", "evidence": [ { "database": "UniProtKB", "id": "Q76FS5", "url": "https://www.uniprot.org/uniprotkb/Q76FS5" } ], "pmid": "" } ], "binding_glycans": [], "biomarkers": [], "sites": [], "record_id": "batch.arabidopsis.19" }, { "uniprot_canonical_ac": "Q7DLR9-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7DLR9", "url": "https://www.uniprot.org/uniprotkb/Q7DLR9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "length": 246, "chemical_mass": 27651.0, "gene_names": "PBG1;20S proteasome beta subunit G1;F13N6.3;F13N6_3;PBG1;PRCH;PROTEASOME BETA SUBUNIT PBG1", "protein_name": "Proteasome subunit beta type-4", "disease": [], "cellular_component": [ { "name": "proteasome core complex, beta-subunit complex", "id": "GO:0019774", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019774", "evidence": [ { "database": "UniProtKB", "id": "Q7DLR9", "url": "https://www.uniprot.org/uniprotkb/Q7DLR9" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q7DLR9", "url": "https://www.uniprot.org/uniprotkb/Q7DLR9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q7DLR9", "url": "https://www.uniprot.org/uniprotkb/Q7DLR9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "Q7DLR9", "url": "https://www.uniprot.org/uniprotkb/Q7DLR9" } ], "pmid": "" }, { "name": "cytosolic ribosome", "id": "GO:0022626", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022626", "evidence": [ { "database": "UniProtKB", "id": "Q7DLR9", "url": "https://www.uniprot.org/uniprotkb/Q7DLR9" } ], "pmid": "" }, { "name": "proteasome complex", "id": "GO:0000502", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000502", "evidence": [ { "database": "UniProtKB", "id": "Q7DLR9", "url": "https://www.uniprot.org/uniprotkb/Q7DLR9" } ], "pmid": "" }, { "name": "proteasome core complex", "id": "GO:0005839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005839", "evidence": [ { "database": "UniProtKB", "id": "Q7DLR9", "url": "https://www.uniprot.org/uniprotkb/Q7DLR9" } ], "pmid": "" } ], "biological_process": [ { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "Q7DLR9", "url": "https://www.uniprot.org/uniprotkb/Q7DLR9" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "Q7DLR9", "url": "https://www.uniprot.org/uniprotkb/Q7DLR9" } ], "pmid": "" } ], "binding_glycans": [], "biomarkers": [], "sites": [ { "uniprot_canonical_ac": "Q7DLR9-1", "start_pos": "234", "end_pos": "234", "site_lbl": "Ser234", "weight": 0.0, "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "evidence": [ { "database": "iPTMnet", "id": "Q7DLR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7DLR9" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ] }, { "uniprot_canonical_ac": "Q7DLR9-1", "start_pos": "245", "end_pos": "245", "site_lbl": "Ser245", "weight": 0.0, "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "evidence": [ { "database": "iPTMnet", "id": "Q7DLR9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7DLR9" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ] } ], "record_id": "batch.arabidopsis.19" }, { "uniprot_canonical_ac": "Q7DM58-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7DM58", "url": "https://www.uniprot.org/uniprotkb/Q7DM58" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "length": 1516, "chemical_mass": 169080.0, "gene_names": "ABCC4;ABCC4;ATMRP4;ATP-binding cassette C4;EST3;F17A22.19;MRP4;multidrug resistance-associated protein 4", "protein_name": "ABC transporter C family member 4", "disease": [], "molecular_function": [ { "name": "ATP binding", "id": "GO:0005524", "url": 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Causes elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3.", "evidence": [ { "database": "UniProtKB", "id": "Q84W55", "url": "https://www.uniprot.org/uniprotkb/Q84W55" }, { "database": "PubMed", "id": "15539468", "url": "https://glygen.org/publication/PubMed/15539468" } ] } ] } ], "record_id": "batch.arabidopsis.19" }, { "uniprot_canonical_ac": "Q8L627-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L627", "url": "https://www.uniprot.org/uniprotkb/Q8L627" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "length": 375, "chemical_mass": 43527.0, "gene_names": "SRD2;F1K23.20;F3M18.1;SHOOT REDIFFERENTIATION DEFECTIVE 2;SRD2", "protein_name": "snRNA-activating protein complex subunit", "disease": [], "molecular_function": [ { "name": "bent DNA binding", "id": "GO:0003681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003681", "evidence": [ { 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"database": "UniProtKB", "id": "Q8L627", "url": "https://www.uniprot.org/uniprotkb/Q8L627" } ], "pmid": "" }, { "name": "longitudinal axis specification", "id": "GO:0009942", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009942", "evidence": [ { "database": "UniProtKB", "id": "Q8L627", "url": "https://www.uniprot.org/uniprotkb/Q8L627" } ], "pmid": "" }, { "name": "plant organ morphogenesis", "id": "GO:1905392", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905392", "evidence": [ { "database": "UniProtKB", "id": "Q8L627", "url": "https://www.uniprot.org/uniprotkb/Q8L627" } ], "pmid": "" }, { "name": "radial axis specification", "id": "GO:0009945", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009945", "evidence": [ { "database": "UniProtKB", "id": "Q8L627", "url": "https://www.uniprot.org/uniprotkb/Q8L627" } ], "pmid": "" }, { "name": "cell cycle switching", "id": "GO:0060184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060184", "evidence": [ { "database": "UniProtKB", "id": 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[ { "sequence_org": "G", "sequence_mut": "R", "comment": "In srd2-1; temperature sensitive plants with severe suppression of seedling growth and impaired shoot redifferentiation in root explants at 27 degrees Celsius but not at 22 degrees Celsius, however, reduced lateral root formation at any temperature. Loss of reinitiation of the progression of the cell cycle at the restrictive temperature (e.g. 27 degrees Celsius) accompanied with a global reduction in protein tyrosine phosphorylation and impaired small-nuclear RNA transcription. Reduced trichome branching, disordered vascular network and abnormal guard cell shapes are also observed. Altered organization of cells in root primordia, with abnormal apical/basal and radial axes, and persistance of primordial cell division resulting in the formation of abnormal hemispherical laterals.", "evidence": [ { "database": "UniProtKB", "id": "Q8L627", "url": "https://www.uniprot.org/uniprotkb/Q8L627" }, { "database": "PubMed", "id": "9389671", "url": "https://glygen.org/publication/PubMed/9389671" }, { "database": "PubMed", "id": "20965997", "url": "https://glygen.org/publication/PubMed/20965997" }, { "database": "PubMed", "id": "12232244", "url": "https://glygen.org/publication/PubMed/12232244" }, { "database": "PubMed", "id": "16098103", "url": "https://glygen.org/publication/PubMed/16098103" }, { "database": "PubMed", "id": "12881506", "url": "https://glygen.org/publication/PubMed/12881506" }, { "database": "PubMed", "id": "18064403", "url": "https://glygen.org/publication/PubMed/18064403" } ] } ] } ], "record_id": "batch.arabidopsis.19" }, { "uniprot_canonical_ac": 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"UniProtKB", "id": "Q84JK2", "url": "https://www.uniprot.org/uniprotkb/Q84JK2" } ], "pmid": "" } ], "cellular_component": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q84JK2", "url": "https://www.uniprot.org/uniprotkb/Q84JK2" } ], "pmid": "" } ], "biological_process": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "Q84JK2", "url": "https://www.uniprot.org/uniprotkb/Q84JK2" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "Q84JK2", "url": "https://www.uniprot.org/uniprotkb/Q84JK2" } ], "pmid": "" }, { "name": "photoperiodism", "id": "GO:0009648", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009648", "evidence": [ { "database": "UniProtKB", "id": "Q84JK2", "url": "https://www.uniprot.org/uniprotkb/Q84JK2" } ], "pmid": "" }, { "name": "regulation of photoperiodism, flowering", "id": "GO:2000028", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000028", "evidence": [ { "database": "UniProtKB", "id": "Q84JK2", "url": "https://www.uniprot.org/uniprotkb/Q84JK2" } ], "pmid": "" }, { "name": "regulation of flower development", "id": "GO:0009909", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009909", "evidence": [ { "database": "UniProtKB", "id": "Q84JK2", "url": "https://www.uniprot.org/uniprotkb/Q84JK2" } ], "pmid": "" }, { "name": "positive regulation of flower development", "id": "GO:0009911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009911", "evidence": [ { "database": "UniProtKB", "id": "Q84JK2", "url": "https://www.uniprot.org/uniprotkb/Q84JK2" } ], "pmid": "" } ], "binding_glycans": [], "biomarkers": [], "sites": [ { "uniprot_canonical_ac": "Q84JK2-1", "start_pos": "282", "end_pos": "282", "site_lbl": "Thr282", "weight": 0.0, "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "evidence": [ { "database": "UniProtKB", "id": "Q84JK2", "url": "https://www.uniprot.org/uniprotkb/Q84JK2" }, { "database": "PubMed", "id": "25661797", "url": "https://glygen.org/publication/PubMed/25661797" }, { "database": "iPTMnet", "id": "Q84JK2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JK2" } ] } ], "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of phosphorylation and loss of interaction with FT. Loss of phosphorylation; when associated with A-276.", "evidence": [ { "database": "UniProtKB", "id": "Q84JK2", "url": "https://www.uniprot.org/uniprotkb/Q84JK2" }, { "database": "PubMed", "id": "25661797", "url": "https://glygen.org/publication/PubMed/25661797" }, { "database": "PubMed", "id": "16099979", "url": "https://glygen.org/publication/PubMed/16099979" } ] }, { "sequence_org": "T", "sequence_mut": "E", "comment": "Normal interaction with FT. No effect on interaction with FD, GRF3 and GRF4; when associated with Q-277.", "evidence": [ { "database": "UniProtKB", "id": "Q84JK2", "url": "https://www.uniprot.org/uniprotkb/Q84JK2" }, { "database": "PubMed", "id": "25661797", "url": "https://glygen.org/publication/PubMed/25661797" } ] }, { "sequence_org": "T", "sequence_mut": "S", "comment": "Normal interaction with FT.", "evidence": [ { "database": "UniProtKB", "id": "Q84JK2", "url": "https://www.uniprot.org/uniprotkb/Q84JK2" }, { "database": "PubMed", "id": "16099979", "url": "https://glygen.org/publication/PubMed/16099979" } ] } ] }, { "uniprot_canonical_ac": "Q84JK2-1", "start_pos": "276", "end_pos": "276", "site_lbl": "Thr276", "weight": 0.0, "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on phosphorylation. Loss of phosphorylation; when associated with A-282.", "evidence": [ { "database": "UniProtKB", "id": "Q84JK2", "url": "https://www.uniprot.org/uniprotkb/Q84JK2" }, { "database": "PubMed", "id": "25661797", "url": "https://glygen.org/publication/PubMed/25661797" } ] } ] }, { "uniprot_canonical_ac": "Q84JK2-1", "start_pos": "277", "end_pos": "277", "site_lbl": "Leu277", "weight": 0.0, "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "Q", "comment": "Loss of phosphorylation and loss of interaction with FD, GRF3 and GRF4. No effect on interaction with FD, GRF3 and GRF4; when associated with E-282.", "evidence": [ { "database": "UniProtKB", "id": "Q84JK2", "url": "https://www.uniprot.org/uniprotkb/Q84JK2" }, { "database": "PubMed", "id": "25661797", "url": "https://glygen.org/publication/PubMed/25661797" } ] } ] } ], "record_id": "batch.arabidopsis.19" }, { "uniprot_canonical_ac": "Q8VY26-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "length": 570, "chemical_mass": 63957.0, "gene_names": "CCD8;ATCCD8;CCD8;MAX4;MORE AXILLARY BRANCHING 4;NCED8;T16I18.20;T16I18_20;carotenoid cleavage dioxygenase 8", "protein_name": "Carotenoid cleavage dioxygenase 8, chloroplastic", "disease": [], "molecular_function": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "pmid": "" }, { "name": "carotenoid dioxygenase activity", "id": "GO:0010436", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010436", "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen", "id": "GO:0016702", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016702", "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "pmid": "" }, { "name": "all-trans-beta-apo-10'-carotenal cleavage oxygenase activity", "id": "GO:0102251", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0102251", "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "pmid": "" }, { "name": "9-cis-10'-apo-beta-carotenal cleavage oxygenase activity", "id": "GO:0102396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0102396", "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "pmid": "" } ], "biological_process": [ { "name": "response to herbicide", "id": "GO:0009635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009635", "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "pmid": "" }, { "name": "carotene catabolic process", "id": "GO:0016121", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016121", "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "pmid": "" }, { "name": "xanthophyll catabolic process", "id": "GO:0016124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016124", "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "pmid": "" }, { "name": "response to auxin", "id": "GO:0009733", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009733", "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "pmid": "" }, { "name": "auxin polar transport", "id": "GO:0009926", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009926", "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "pmid": "" }, { "name": "leaf morphogenesis", "id": "GO:0009965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009965", "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "pmid": "" }, { "name": "secondary shoot formation", "id": "GO:0010223", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010223", "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "pmid": "" }, { "name": "strigolactone biosynthetic process", "id": "GO:1901601", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901601", "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "pmid": "" } ], "cellular_component": [ { "name": "chloroplast", "id": "GO:0009507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009507", "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "pmid": "" }, { "name": "chloroplast stroma", "id": "GO:0009570", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009570", "evidence": [ { "database": "UniProtKB", "id": "Q8VY26", "url": "https://www.uniprot.org/uniprotkb/Q8VY26" } ], "pmid": "" } ], "binding_glycans": [], "biomarkers": [], "sites": [], "record_id": "batch.arabidopsis.19" }, { "uniprot_canonical_ac": "Q8L540-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L540", "url": "https://www.uniprot.org/uniprotkb/Q8L540" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "length": 376, "chemical_mass": 40401.0, "gene_names": "LTO1;F4B14.2;F8D20.270;LTO1;Lumen Thiol Oxidoreductase 1;VKOR", "protein_name": "Thiol-disulfide oxidoreductase LTO1", "disease": [], "molecular_function": [ { "name": "quinone binding", "id": "GO:0048038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048038", "evidence": [ { "database": "UniProtKB", "id": "Q8L540", "url": "https://www.uniprot.org/uniprotkb/Q8L540" } ], "pmid": "" }, { "name": "NAD(P)H dehydrogenase (quinone) activity", "id": "GO:0003955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003955", "evidence": [ { "database": "UniProtKB", "id": "Q8L540", "url": "https://www.uniprot.org/uniprotkb/Q8L540" } ], "pmid": "" }, { "name": "oxidoreductase activity", "id": "GO:0016491", "url": 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"evidence": [ { "database": "UniProtKB", "id": "Q8L540", "url": "https://www.uniprot.org/uniprotkb/Q8L540" } ], "pmid": "" } ], "biological_process": [ { "name": "photosystem II assembly", "id": "GO:0010207", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010207", "evidence": [ { "database": "UniProtKB", "id": "Q8L540", "url": "https://www.uniprot.org/uniprotkb/Q8L540" } ], "pmid": "" } ], "binding_glycans": [], "biomarkers": [], "sites": [ { "uniprot_canonical_ac": "Q8L540-1", "start_pos": "109", "end_pos": "109", "site_lbl": "Cys109", "weight": 0.0, "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of function in catalyzing disulfide bond.", "evidence": [ { "database": "UniProtKB", "id": "Q8L540", "url": "https://www.uniprot.org/uniprotkb/Q8L540" }, { "database": "PubMed", "id": "21781282", "url": "https://glygen.org/publication/PubMed/21781282" } ] } ] }, { "uniprot_canonical_ac": "Q8L540-1", "start_pos": "116", "end_pos": "116", "site_lbl": "Cys116", 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of function in catalyzing disulfide bond.", "evidence": [ { "database": "UniProtKB", "id": "Q8L540", "url": "https://www.uniprot.org/uniprotkb/Q8L540" }, { "database": "PubMed", "id": "21781282", "url": "https://glygen.org/publication/PubMed/21781282" } ] } ] }, { "uniprot_canonical_ac": "Q8L540-1", "start_pos": "230", "end_pos": "230", "site_lbl": "Cys230", "weight": 0.0, "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on catalysis of disulfide bond.", "evidence": [ { "database": "UniProtKB", "id": "Q8L540", "url": "https://www.uniprot.org/uniprotkb/Q8L540" }, { "database": "PubMed", "id": "21781282", "url": "https://glygen.org/publication/PubMed/21781282" } ] } ] }, { "uniprot_canonical_ac": "Q8L540-1", "start_pos": "293", "end_pos": "293", "site_lbl": "Cys293", "weight": 0.0, "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of function in catalyzing disulfide bond.", "evidence": [ { "database": "UniProtKB", "id": 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"" }, { "name": "regulation of immune response", "id": "GO:0050776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050776", "evidence": [ { "database": "UniProtKB", "id": "Q8LGB6", "url": "https://www.uniprot.org/uniprotkb/Q8LGB6" } ], "pmid": "" }, { "name": "response to temperature stimulus", "id": "GO:0009266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009266", "evidence": [ { "database": "UniProtKB", "id": "Q8LGB6", "url": "https://www.uniprot.org/uniprotkb/Q8LGB6" } ], "pmid": "" } ], "binding_glycans": [], "biomarkers": [], "sites": [ { "uniprot_canonical_ac": "Q8LGB6-1", "start_pos": "128", "end_pos": "128", "site_lbl": "Gly128", "weight": 0.0, "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "In zed1-3; loss of function and reduced interaction with RPP13L4/ZAR1 and Pseudomonas syringae type III effector HopZ1a.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGB6", "url": "https://www.uniprot.org/uniprotkb/Q8LGB6" }, { "database": "PubMed", "id": "28652264", "url": "https://glygen.org/publication/PubMed/28652264" }, { "database": "PubMed", "id": "24170858", "url": "https://glygen.org/publication/PubMed/24170858" } ] } ] }, { "uniprot_canonical_ac": "Q8LGB6-1", "start_pos": "173", "end_pos": "173", "site_lbl": "Asn173", "weight": 0.0, "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "S", "comment": "In zed1-D; normal growth of plants grown below 22 degrees Celsius, but high temperature (above 22 degrees Celsius)-dependent RPP13L4/ZAR1-influenced autoimmunity and growth retardation. Plants cultivated above 23 degrees Celsius are dwarf with crinkled lamina, shortened petiole, reduced pedicel length and silique numbers, increased branches, severely shortened inflorescence stem and clustered siliques. These phenotypes are associated with inhibited cell elongation and/or expansion and disturbed differentiation of trichomes and stomata, disorganized interfascicular fibers and fewer pith tissues in inflorescence stems as well as increased lignin deposition in the vasculatures. Elevated reactive oxygen species (ROS) content and extensive cell death as well as reduced expression of pathogenesis related genes (e.g. PR1 and PR2) but accumulation of SNC1 when grown at 25 degrees Celsius. The high temperature-induced autoimmune phenotype is blocked in the double mutant zed1-D zar1-3. Stronger binding activity with RPP13L4/ZAR1. Confined to the cytosol. Fully rescued by the over-expression of RKS1/ZRK1 and ZRK12, and partially by the over-expression of ZRK4, ZRK10, ZRK13 and ZRK14. The double mutants zed1-D snc1-11 and zed1-D nahG have restored normal growth phenotypes and rescued autoimmunity defects. These pleiotropic phenotypes are suppressed in plants lacking SZE1 and SZE2.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGB6", "url": "https://www.uniprot.org/uniprotkb/Q8LGB6" }, { "database": "PubMed", "id": "28499073", "url": "https://glygen.org/publication/PubMed/28499073" }, { "database": "PubMed", "id": "30947022", "url": "https://glygen.org/publication/PubMed/30947022" } ] } ] }, { "uniprot_canonical_ac": "Q8LGB6-1", "start_pos": "231", "end_pos": "231", "site_lbl": "Asp231", "weight": 0.0, "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "In zed1-4; loss of function, impaired interaction with RPP13L4/ZAR1 and Pseudomonas syringae type III effector HopZ1a, and completely abrogated hypersensitive response (HR).", "evidence": [ { "database": "UniProtKB", "id": "Q8LGB6", "url": "https://www.uniprot.org/uniprotkb/Q8LGB6" }, { "database": "PubMed", "id": "28652264", "url": "https://glygen.org/publication/PubMed/28652264" }, { "database": "PubMed", 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"Actin-related protein 6", "disease": [], "molecular_function": [ { "name": "structural constituent of cytoskeleton", "id": "GO:0005200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005200", "evidence": [ { "database": "UniProtKB", "id": "Q8LGE3", "url": "https://www.uniprot.org/uniprotkb/Q8LGE3" } ], "pmid": "" }, { "name": "nucleosome binding", "id": "GO:0031491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031491", "evidence": [ { "database": "UniProtKB", "id": "Q8LGE3", "url": "https://www.uniprot.org/uniprotkb/Q8LGE3" } ], "pmid": "" } ], "cellular_component": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q8LGE3", "url": "https://www.uniprot.org/uniprotkb/Q8LGE3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q8LGE3", "url": 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"https://www.uniprot.org/uniprotkb/Q8LGE3" } ], "pmid": "" } ], "binding_glycans": [], "biomarkers": [], "sites": [ { "uniprot_canonical_ac": "Q8LGE3-1", "start_pos": "199", "end_pos": "199", "site_lbl": "Tyr199", "weight": 0.0, "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "evidence": [ { "database": "iPTMnet", "id": "Q8LGE3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGE3" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ] }, { "uniprot_canonical_ac": "Q8LGE3-1", "start_pos": "201", "end_pos": "201", "site_lbl": "Ser201", "weight": 0.0, "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "evidence": [ { "database": "iPTMnet", "id": "Q8LGE3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGE3" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ] } ], "record_id": 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"Q8LGF7", "url": "https://www.uniprot.org/uniprotkb/Q8LGF7" } ], "pmid": "" }, { "name": "ubiquitin conjugating enzyme activity", "id": "GO:0061631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061631", "evidence": [ { "database": "UniProtKB", "id": "Q8LGF7", "url": "https://www.uniprot.org/uniprotkb/Q8LGF7" } ], "pmid": "" } ], "cellular_component": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q8LGF7", "url": "https://www.uniprot.org/uniprotkb/Q8LGF7" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q8LGF7", "url": "https://www.uniprot.org/uniprotkb/Q8LGF7" } ], "pmid": "" }, { "name": "peroxisomal membrane", "id": "GO:0005778", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005778", "evidence": [ { "database": "UniProtKB", "id": "Q8LGF7", "url": 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"database": "iPTMnet", "id": "Q8LGN1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGN1" } ] } ] } ], "record_id": "batch.arabidopsis.19" }, { "uniprot_canonical_ac": "Q8LGU7-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "length": 280, "chemical_mass": 31333.0, "gene_names": "TRZ1;F1M20.38;F25A4.32;F25A4_32;NUZ;RNASE Z;TRZ1;tRNAse Z1", "protein_name": "tRNase Z TRZ1", "disease": [], "cellular_component": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" } ], "pmid": "" } ], "biological_process": [ { "name": "tRNA processing", "id": "GO:0008033", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008033", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" } ], "pmid": "" }, { "name": "tRNA 3'-end processing", "id": "GO:0042780", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042780", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" } ], "pmid": "" } ], "molecular_function": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" } ], "pmid": "" }, { "name": "3'-tRNA processing endoribonuclease activity", "id": "GO:0042781", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042781", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" } ], "pmid": "" } ], "binding_glycans": [], "biomarkers": [], "sites": [ { "uniprot_canonical_ac": "Q8LGU7-1", "start_pos": "133", "end_pos": "133", "site_lbl": "His133", "weight": 0.0, "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "L", "comment": "Loss of catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] } ] }, { "uniprot_canonical_ac": "Q8LGU7-1", "start_pos": "140", "end_pos": "140", "site_lbl": "Tyr140", "weight": 0.0, "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "L", "comment": "Reduced catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] } ] }, { "uniprot_canonical_ac": "Q8LGU7-1", "start_pos": "178", "end_pos": "178", "site_lbl": "Pro178", "weight": 0.0, "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "A", "comment": "Reduced catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] } ] }, { "uniprot_canonical_ac": "Q8LGU7-1", "start_pos": "184", "end_pos": "184", "site_lbl": "Gly184", "weight": 0.0, "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "V", "comment": "Loss of tRNA binding, but no effect on dimerization.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", 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"database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] } ] }, { "uniprot_canonical_ac": "Q8LGU7-1", "start_pos": "203", "end_pos": "203", "site_lbl": "Lys203", "weight": 0.0, "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "I", "comment": "Loss of dimerization and catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] } ] }, { "uniprot_canonical_ac": "Q8LGU7-1", "start_pos": "205", "end_pos": "205", "site_lbl": "Leu205", "weight": 0.0, "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "I", "comment": "Reduced catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": 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"weight": 0.0, "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "G", "comment": "Reduced pre-tRNA processing, but increased hydrolysis of bpNPP. No effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] }, { "sequence_org": "R", "sequence_mut": "", "comment": "Loss of catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] } ] }, { "uniprot_canonical_ac": "Q8LGU7-1", "start_pos": "253", "end_pos": "253", "site_lbl": "Tyr253", "weight": 0.0, "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "S", "comment": "Reduced catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] } ] }, { "uniprot_canonical_ac": "Q8LGU7-1", "start_pos": "25", "end_pos": "25", "site_lbl": "Cys25", "weight": 0.0, "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "G", "comment": "Reduced catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] } ] }, { "uniprot_canonical_ac": "Q8LGU7-1", "start_pos": "40", "end_pos": "40", "site_lbl": "Cys40", "weight": 0.0, "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "G", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] } ] }, { "uniprot_canonical_ac": "Q8LGU7-1", "start_pos": "51", "end_pos": "51", "site_lbl": "Phe51", "weight": 0.0, "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "L", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] } ] }, { "uniprot_canonical_ac": "Q8LGU7-1", "start_pos": "54", "end_pos": "54", "site_lbl": "His54", "weight": 0.0, "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "L", "comment": "Loss of catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] } ] }, { "uniprot_canonical_ac": "Q8LGU7-1", "start_pos": "56", "end_pos": "56", "site_lbl": "His56", "weight": 0.0, "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "L", "comment": "Loss of catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] } ] }, { "uniprot_canonical_ac": "Q8LGU7-1", "start_pos": "58", "end_pos": "58", "site_lbl": "Asp58", "weight": 0.0, "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of catalytic activity, but no effect on dimerization and tRNA binding.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] } ] }, { "uniprot_canonical_ac": "Q8LGU7-1", "start_pos": "59", "end_pos": "59", "site_lbl": "His59", "weight": 0.0, "mutagenesis": [ { "sequence_org": 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"database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] } ] }, { "uniprot_canonical_ac": "Q8LGU7-1", "start_pos": "83", "end_pos": "83", "site_lbl": "Pro83", "weight": 0.0, "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "L", "comment": "Loss of dimerization and catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8LGU7", "url": "https://www.uniprot.org/uniprotkb/Q8LGU7" }, { "database": "PubMed", "id": "16118225", "url": "https://glygen.org/publication/PubMed/16118225" } ] } ] } ], "record_id": "batch.arabidopsis.19" }, { "uniprot_canonical_ac": "Q8LK56-3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LK56", "url": "https://www.uniprot.org/uniprotkb/Q8LK56" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "length": 1987, "chemical_mass": 221147.0, "gene_names": "DME;AT5G04570;AT5G04580;DEMETER;DME;T32M21.160;T32M21.180;T32M21_160", "protein_name": "Transcriptional activator DEMETER", "disease": [], "molecular_function": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "Q8LK56", "url": "https://www.uniprot.org/uniprotkb/Q8LK56" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "Q8LK56", "url": "https://www.uniprot.org/uniprotkb/Q8LK56" } ], "pmid": "" }, { "name": "4 iron, 4 sulfur cluster binding", "id": "GO:0051539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051539", "evidence": [ { "database": "UniProtKB", "id": "Q8LK56", "url": "https://www.uniprot.org/uniprotkb/Q8LK56" } ], "pmid": "" }, { "name": "DNA N-glycosylase 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"database": "UniProtKB", "id": "Q8VZS9", "url": "https://www.uniprot.org/uniprotkb/Q8VZS9" } ], "pmid": "" }, { "name": "regulation of cell size", "id": "GO:0008361", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008361", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS9", "url": "https://www.uniprot.org/uniprotkb/Q8VZS9" } ], "pmid": "" }, { "name": "positive regulation of anaphase-promoting complex-dependent catabolic process", "id": "GO:1905786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905786", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS9", "url": "https://www.uniprot.org/uniprotkb/Q8VZS9" } ], "pmid": "" }, { "name": "maintenance of shoot apical meristem identity", "id": "GO:0010492", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010492", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS9", "url": "https://www.uniprot.org/uniprotkb/Q8VZS9" } ], "pmid": "" } ], "cellular_component": [ { "name": "nucleus", "id": "GO:0005634", "url": 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"" }, { "name": "maintenance of root meristem identity", "id": "GO:0010078", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010078", "evidence": [ { "database": "UniProtKB", "id": "Q9S736", "url": "https://www.uniprot.org/uniprotkb/Q9S736" } ], "pmid": "" }, { "name": "maintenance of shoot apical meristem identity", "id": "GO:0010492", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010492", "evidence": [ { "database": "UniProtKB", "id": "Q9S736", "url": "https://www.uniprot.org/uniprotkb/Q9S736" } ], "pmid": "" }, { "name": "transport of virus in host, cell to cell", "id": "GO:0046740", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046740", "evidence": [ { "database": "UniProtKB", "id": "Q9S736", "url": "https://www.uniprot.org/uniprotkb/Q9S736" } ], "pmid": "" }, { "name": "primary root development", "id": "GO:0080022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0080022", "evidence": [ { "database": "UniProtKB", "id": "Q9S736", "url": "https://www.uniprot.org/uniprotkb/Q9S736" } 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"pmid": "" }, { "name": "response to heat", "id": "GO:0009408", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009408", "evidence": [ { "database": "UniProtKB", "id": "Q941L2", "url": "https://www.uniprot.org/uniprotkb/Q941L2" } ], "pmid": "" }, { "name": "response to salicylic acid", "id": "GO:0009751", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009751", "evidence": [ { "database": "UniProtKB", "id": "Q941L2", "url": "https://www.uniprot.org/uniprotkb/Q941L2" } ], "pmid": "" }, { "name": "negative regulation of defense response", "id": "GO:0031348", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031348", "evidence": [ { "database": "UniProtKB", "id": "Q941L2", "url": "https://www.uniprot.org/uniprotkb/Q941L2" } ], "pmid": "" } ], "binding_glycans": [], "biomarkers": [], "sites": [], "record_id": "batch.arabidopsis.19" }, { "uniprot_canonical_ac": "Q941L3-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q941L3", 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"https://www.uniprot.org/uniprotkb/Q941L3" } ], "pmid": "" }, { "name": "plastid", "id": "GO:0009536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009536", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" } ], "pmid": "" } ], "biological_process": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" } ], "pmid": "" }, { "name": "cellular homeostasis", "id": "GO:0019725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019725", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" } ], "pmid": "" }, { "name": "cellular response to calcium ion", "id": "GO:0071277", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071277", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" } ], "pmid": "" }, { "name": "response to temperature stimulus", "id": "GO:0009266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009266", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" } ], "pmid": "" }, { "name": "negative regulation of programmed cell death", "id": "GO:0043069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043069", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" } ], "pmid": "" }, { "name": "positive regulation of cell size", "id": "GO:0045793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045793", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" } ], "pmid": "" }, { "name": "response to humidity", "id": "GO:0009270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009270", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" } ], "pmid": "" } ], "molecular_function": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" } ], "pmid": "" }, { "name": "calcium-dependent phospholipid binding", "id": "GO:0005544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005544", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" } ], "pmid": "" } ], "binding_glycans": [], "biomarkers": [], "sites": [ { "uniprot_canonical_ac": "Q941L3-1", "start_pos": "122", "end_pos": "122", "site_lbl": "Asp122", "weight": 0.0, "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "No effect; when associated with A-124. No effect; when associated with A-269. Loss of function; when associated with A-63; A-69 and A-124. Loss of function, but no effect on targeting; when associated with A-63; A-69; A-124; A-209; A-215 and A-269.", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" }, { "database": "PubMed", "id": "20634289", "url": "https://glygen.org/publication/PubMed/20634289" } ] } ] }, { "uniprot_canonical_ac": "Q941L3-1", "start_pos": "124", "end_pos": "124", "site_lbl": "Asp124", "weight": 0.0, "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "No effect; when associated with A-122. Loss of function; when associated with A-63; A-69 and A-122. Loss of function, but no effect on targeting; when associated with A-63; A-69; A-122; A-209; A-215 and A-269.", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" }, { "database": "PubMed", "id": "20634289", "url": "https://glygen.org/publication/PubMed/20634289" } ] } ] }, { "uniprot_canonical_ac": "Q941L3-1", "start_pos": "209", "end_pos": "209", "site_lbl": "Asp209", "weight": 0.0, "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "No effect; when associated with A-215. Loss of function; when associated with A-215 and A-269. Loss of function, but no effect on targeting; when associated with A-63; A-69; A-122; A-124; A-215 and A-269.", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" }, { "database": "PubMed", "id": "20634289", "url": "https://glygen.org/publication/PubMed/20634289" } ] } ] }, { "uniprot_canonical_ac": "Q941L3-1", "start_pos": "215", "end_pos": "215", "site_lbl": "Asp215", "weight": 0.0, "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "No effect; when associated with A-209. Loss of function; when associated with A-209 and A-269. Loss of function, but no effect on targeting; when associated with A-63; A-69; A-122; A-124; A-209 and A-269.", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" }, { "database": "PubMed", "id": "20634289", "url": "https://glygen.org/publication/PubMed/20634289" } ] } ] }, { "uniprot_canonical_ac": "Q941L3-1", "start_pos": "269", "end_pos": "269", "site_lbl": "Asp269", "weight": 0.0, "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "No effect. No effect; when associated with A-122. Loss of function; when associated with A-209 and A-215. Loss of function, but no effect on targeting; when associated with A-63; A-69; A-122; A-124; A-209 and A-215.", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" }, { "database": "PubMed", "id": "20634289", "url": "https://glygen.org/publication/PubMed/20634289" } ] } ] }, { "uniprot_canonical_ac": "Q941L3-1", "start_pos": "2", "end_pos": "2", "site_lbl": "Gly2", "weight": 0.0, "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "Loss of function and altered targeting.", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" }, { "database": "PubMed", "id": "20634289", "url": "https://glygen.org/publication/PubMed/20634289" } ] } ] }, { "uniprot_canonical_ac": "Q941L3-1", "start_pos": "350", "end_pos": "350", "site_lbl": "Ala350", "weight": 0.0, "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "V", "comment": "Loss of function and reduced interaction with BAP1; when associated with A-353.", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" }, { "database": "PubMed", "id": "20634289", "url": "https://glygen.org/publication/PubMed/20634289" } ] } ] }, { "uniprot_canonical_ac": "Q941L3-1", "start_pos": "353", "end_pos": "353", "site_lbl": "Gly353", "weight": 0.0, "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "Loss of function and reduced interaction with BAP1; when associated with V-350.", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" }, { "database": "PubMed", "id": "20634289", "url": "https://glygen.org/publication/PubMed/20634289" } ] } ] }, { "uniprot_canonical_ac": "Q941L3-1", "start_pos": "391", "end_pos": "391", "site_lbl": "Lys391", "weight": 0.0, "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" }, { "database": "PubMed", "id": "20634289", "url": "https://glygen.org/publication/PubMed/20634289" } ] }, { "sequence_org": "K", "sequence_mut": "NAAIRS", "comment": "Loss of function and loss of interaction with BAP1.", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" }, { "database": "PubMed", "id": "20634289", "url": "https://glygen.org/publication/PubMed/20634289" } ] } ] }, { "uniprot_canonical_ac": "Q941L3-1", "start_pos": "63", "end_pos": "63", "site_lbl": "Asp63", "weight": 0.0, "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "No effect. No effect; when associated with A-69. Loss of function; when associated with A-69; A-122 and A-124. Loss of function, but no effect on targeting; when associated with A-69; A-122; A-124; A-209; A-215 and A-269.", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" }, { "database": "PubMed", "id": "20634289", "url": "https://glygen.org/publication/PubMed/20634289" } ] } ] }, { "uniprot_canonical_ac": "Q941L3-1", "start_pos": "69", "end_pos": "69", "site_lbl": "Asp69", "weight": 0.0, "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "No effect; when associated with A-63. Loss of function; when associated with A-63; A-122 and A-124. Loss of function, but no effect on targeting; when associated with A-63; A-122; A-124; A-209; A-215 and A-269.", "evidence": [ { "database": "UniProtKB", "id": "Q941L3", "url": "https://www.uniprot.org/uniprotkb/Q941L3" }, { "database": "PubMed", "id": "20634289", "url": "https://glygen.org/publication/PubMed/20634289" } ] } ] } ], "record_id": "batch.arabidopsis.19" }, { "uniprot_canonical_ac": "Q944A9-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A9", "url": "https://www.uniprot.org/uniprotkb/Q944A9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "length": 265, "chemical_mass": 29872.0, "gene_names": "NPSN11;ATNPSN11;NPSN11;NSPN11;T4C15.14;T4C15_14;novel plant snare 11", "protein_name": "Novel plant SNARE 11", "disease": [], "cellular_component": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "Q944A9", "url": "https://www.uniprot.org/uniprotkb/Q944A9" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "Q944A9", "url": "https://www.uniprot.org/uniprotkb/Q944A9" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "Q944A9", "url": "https://www.uniprot.org/uniprotkb/Q944A9" } ], "pmid": "" }, { "name": "late endosome membrane", "id": "GO:0031902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031902", "evidence": [ { "database": "UniProtKB", "id": "Q944A9", "url": "https://www.uniprot.org/uniprotkb/Q944A9" } ], "pmid": "" }, { "name": "ER to Golgi transport vesicle membrane", "id": "GO:0012507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012507", "evidence": [ { "database": "UniProtKB", "id": "Q944A9", "url": "https://www.uniprot.org/uniprotkb/Q944A9" } ], "pmid": "" }, { "name": "SNARE complex", "id": "GO:0031201", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031201", "evidence": [ { "database": "UniProtKB", "id": "Q944A9", "url": "https://www.uniprot.org/uniprotkb/Q944A9" } ], "pmid": "" }, { "name": "cell plate", "id": "GO:0009504", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009504", "evidence": [ { "database": "UniProtKB", "id": "Q944A9", "url": "https://www.uniprot.org/uniprotkb/Q944A9" } ], "pmid": "" } ], "biological_process": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "Q944A9", "url": "https://www.uniprot.org/uniprotkb/Q944A9" } ], "pmid": "" }, { "name": "vesicle fusion", "id": "GO:0006906", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006906", "evidence": [ { "database": "UniProtKB", "id": "Q944A9", "url": "https://www.uniprot.org/uniprotkb/Q944A9" } ], "pmid": "" }, { "name": "cytokinesis by cell plate formation", "id": "GO:0000911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000911", "evidence": [ { "database": "UniProtKB", "id": "Q944A9", "url": "https://www.uniprot.org/uniprotkb/Q944A9" } ], "pmid": "" } ], "molecular_function": [ { "name": "SNARE binding", "id": "GO:0000149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000149", "evidence": [ { "database": "UniProtKB", "id": "Q944A9", "url": "https://www.uniprot.org/uniprotkb/Q944A9" } ], "pmid": "" }, { "name": "SNAP receptor activity", "id": "GO:0005484", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005484", "evidence": [ { "database": "UniProtKB", "id": "Q944A9", "url": "https://www.uniprot.org/uniprotkb/Q944A9" } ], "pmid": "" } ], "binding_glycans": [], "biomarkers": [], "sites": [], "record_id": "batch.arabidopsis.19" }, { "uniprot_canonical_ac": "Q944G5-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944G5", "url": "https://www.uniprot.org/uniprotkb/Q944G5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "length": 636, "chemical_mass": 71040.0, "gene_names": "NPF2.10;AtNPF2.10;GLUCOSINOLATE TRANSPORTER-1;GTR1;NPF2.10;NRT1/ PTR family 2.10;T17F15.170", "protein_name": "Protein NRT1/ PTR FAMILY 2.10", "disease": [], "cellular_component": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q944G5", "url": "https://www.uniprot.org/uniprotkb/Q944G5" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "Q944G5", "url": "https://www.uniprot.org/uniprotkb/Q944G5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "Q944G5", "url": "https://www.uniprot.org/uniprotkb/Q944G5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "Q944G5", "url": "https://www.uniprot.org/uniprotkb/Q944G5" } ], "pmid": "" }, { "name": "Golgi trans cisterna", "id": "GO:0000138", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000138", "evidence": [ { "database": "UniProtKB", "id": "Q944G5", "url": "https://www.uniprot.org/uniprotkb/Q944G5" } ], "pmid": "" }, { "name": "plasmodesma", "id": "GO:0009506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009506", "evidence": [ { "database": "UniProtKB", "id": "Q944G5", "url": "https://www.uniprot.org/uniprotkb/Q944G5" } ], "pmid": "" } ], "molecular_function": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "Q944G5", "url": "https://www.uniprot.org/uniprotkb/Q944G5" } ], "pmid": "" }, { "name": "glucosinolate:proton symporter activity", "id": "GO:0090448", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090448", "evidence": [ { "database": "UniProtKB", "id": "Q944G5", "url": "https://www.uniprot.org/uniprotkb/Q944G5" } ], "pmid": "" } ], "biological_process": [ { "name": "transmembrane transport", "id": "GO:0055085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055085", "evidence": [ { "database": "UniProtKB", "id": "Q944G5", "url": "https://www.uniprot.org/uniprotkb/Q944G5" } ], "pmid": "" }, { "name": "phloem glucosinolate loading", "id": "GO:0090449", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090449", "evidence": [ { "database": "UniProtKB", "id": "Q944G5", "url": "https://www.uniprot.org/uniprotkb/Q944G5" } ], "pmid": "" }, { "name": "glucosinolate transport", 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"UniProtKB", "id": "Q9FWR4", "url": "https://www.uniprot.org/uniprotkb/Q9FWR4" } ], "pmid": "" }, { "name": "cellular response to hydrogen peroxide", "id": "GO:0070301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070301", "evidence": [ { "database": "UniProtKB", "id": "Q9FWR4", "url": "https://www.uniprot.org/uniprotkb/Q9FWR4" } ], "pmid": "" }, { "name": "response to ozone", "id": "GO:0010193", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010193", "evidence": [ { "database": "UniProtKB", "id": "Q9FWR4", "url": "https://www.uniprot.org/uniprotkb/Q9FWR4" } ], "pmid": "" }, { "name": "L-ascorbic acid metabolic process", "id": "GO:0019852", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019852", "evidence": [ { "database": "UniProtKB", "id": "Q9FWR4", "url": "https://www.uniprot.org/uniprotkb/Q9FWR4" } ], "pmid": "" }, { "name": "protein glutathionylation", "id": "GO:0010731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010731", "evidence": [ { "database": "UniProtKB", "id": "Q9FWR4", "url": "https://www.uniprot.org/uniprotkb/Q9FWR4" } ], "pmid": "" }, { "name": "response to symbiotic fungus", "id": "GO:0009610", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009610", "evidence": [ { "database": "UniProtKB", "id": "Q9FWR4", "url": "https://www.uniprot.org/uniprotkb/Q9FWR4" } ], "pmid": "" }, { "name": "response to jasmonic acid", "id": "GO:0009753", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009753", "evidence": [ { "database": "UniProtKB", "id": "Q9FWR4", "url": "https://www.uniprot.org/uniprotkb/Q9FWR4" } ], "pmid": "" }, { "name": "acquisition of seed longevity", "id": "GO:0140547", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140547", "evidence": [ { "database": "UniProtKB", "id": "Q9FWR4", "url": "https://www.uniprot.org/uniprotkb/Q9FWR4" } ], "pmid": "" }, { "name": "regulation of biological process involved in symbiotic interaction", "id": "GO:0043903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043903", "evidence": [ { "database": "UniProtKB", "id": "Q9FWR4", "url": "https://www.uniprot.org/uniprotkb/Q9FWR4" } ], "pmid": "" }, { "name": "ascorbate glutathione cycle", "id": "GO:0033355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033355", "evidence": [ { "database": "UniProtKB", "id": "Q9FWR4", "url": "https://www.uniprot.org/uniprotkb/Q9FWR4" } ], "pmid": "" }, { "name": "positive regulation of salicylic acid mediated signaling pathway", "id": "GO:0080151", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0080151", "evidence": [ { "database": "UniProtKB", "id": "Q9FWR4", "url": "https://www.uniprot.org/uniprotkb/Q9FWR4" } ], "pmid": "" } ], "binding_glycans": [], "biomarkers": [], "sites": [ { "uniprot_canonical_ac": "Q9FWR4-1", "start_pos": "20", "end_pos": "20", "site_lbl": "Cys20", "weight": 0.0, "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "No activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9FWR4", "url": "https://www.uniprot.org/uniprotkb/Q9FWR4" }, { "database": "PubMed", "id": "12077129", "url": "https://glygen.org/publication/PubMed/12077129" } ] } ] }, { "uniprot_canonical_ac": "Q9FWR4-1", "start_pos": "6", "end_pos": "6", "site_lbl": "Cys6", "weight": 0.0, "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Reduced activity by 50 percent.", "evidence": [ { "database": "UniProtKB", "id": "Q9FWR4", "url": "https://www.uniprot.org/uniprotkb/Q9FWR4" }, { "database": "PubMed", "id": "12077129", "url": "https://glygen.org/publication/PubMed/12077129" } ] } ] } ], "record_id": "batch.arabidopsis.19" }, { "uniprot_canonical_ac": "Q9FX43-1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "length": 310, "chemical_mass": 34347.0, "gene_names": "MKK9;ATMKK9;MAP kinase kinase 9;MAP2K9;MKK9;T9L24.32;T9L24_32", "protein_name": "Mitogen-activated protein kinase kinase 9", "disease": [], "biological_process": [ { "name": "defense response to other organism", "id": "GO:0098542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098542", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "cellular response to hypoxia", "id": "GO:0071456", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071456", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "response to wounding", "id": "GO:0009611", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009611", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "protein autophosphorylation", "id": "GO:0046777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046777", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "response to salt stress", "id": "GO:0009651", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009651", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "response to fungus", "id": "GO:0009620", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009620", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "ethylene biosynthetic process", "id": "GO:0009693", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009693", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "ethylene-activated signaling pathway", "id": "GO:0009873", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009873", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "pollen-pistil interaction", "id": "GO:0009875", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009875", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "leaf senescence", "id": "GO:0010150", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010150", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "camalexin biosynthetic process", "id": "GO:0010120", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010120", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" } ], "molecular_function": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "protein tyrosine kinase activity", "id": "GO:0004713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004713", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "protein kinase activator activity", "id": "GO:0030295", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030295", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "MAP kinase kinase activity", "id": "GO:0004708", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004708", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "protein serine kinase activity", "id": "GO:0106310", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106310", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" } ], "cellular_component": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" } ], "pmid": "" } ], "binding_glycans": [], "biomarkers": [], "sites": [ { "uniprot_canonical_ac": "Q9FX43-1", "start_pos": "195", "end_pos": "195", "site_lbl": "Ser195", "weight": 0.0, "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" }, { "database": "PubMed", "id": "19251906", "url": "https://glygen.org/publication/PubMed/19251906" }, { "database": "iPTMnet", "id": "Q9FX43", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FX43" } ] } ], "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "E", "comment": "Constitutively active; when associated with E-201.", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" }, { "database": "PubMed", "id": "19251906", "url": "https://glygen.org/publication/PubMed/19251906" } ] } ] }, { "uniprot_canonical_ac": "Q9FX43-1", "start_pos": "201", "end_pos": "201", "site_lbl": "Ser201", "weight": 0.0, "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" }, { "database": "PubMed", "id": "18693252", "url": "https://glygen.org/publication/PubMed/18693252" }, { "database": "PubMed", "id": "19251906", "url": "https://glygen.org/publication/PubMed/19251906" }, { "database": "iPTMnet", "id": "Q9FX43", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9FX43" } ] } ], "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "D", "comment": "Constitutively active; when associated with D-205.", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" }, { "database": "PubMed", "id": "19251906", "url": "https://glygen.org/publication/PubMed/19251906" }, { "database": "PubMed", "id": "18693252", "url": "https://glygen.org/publication/PubMed/18693252" } ] }, { "sequence_org": "S", "sequence_mut": "E", "comment": "Constitutively active; when associated with E-195.", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": "https://www.uniprot.org/uniprotkb/Q9FX43" }, { "database": "PubMed", "id": "19251906", "url": "https://glygen.org/publication/PubMed/19251906" }, { "database": "PubMed", "id": "18693252", "url": "https://glygen.org/publication/PubMed/18693252" } ] } ] }, { "uniprot_canonical_ac": "Q9FX43-1", "start_pos": "205", "end_pos": "205", "site_lbl": "Thr205", "weight": 0.0, "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "evidence": [ { "database": "UniProtKB", "id": "Q9FX43", "url": 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