{
    "bcoid": "GLY_001719",
    "title": "Zebrafish Domains and Regions Citations (UniProtKB)",
    "description": "The Zebrafish domain and regions citations (UniProtKB) dataset contains Danio rerio [taxid:7955] publication ...",
    "filename_list": "zebrafish_protein_citations_domains_uniprotkb.csv",
    "filename": "zebrafish_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Danio rerio"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A0R4IMY7-1...",
                "Architecture..."
            ],
            [
                "B7ZC96-1...",
                "Open structu..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A0A0R4IMY7-1",
                "Architecture of the TRPM2 channel and its activation mechanism by ADP-ribose and calcium.",
                "Nature",
                "2018-10",
                "Huang Yihe, Winkler Paige A, Sun Weinan, L\u00fc Wei, Du Juan",
                "protein_xref_pubmed",
                "30250252",
                "protein_xref_uniprotkb",
                "A0A0R4IMY7"
            ],
            [
                "B7ZC96-1",
                "Open structure of the Ca2+ gating ring in the high-conductance Ca2+-activated K+ channel.",
                "Nature",
                "2011-12-04",
                "Yuan Peng, Leonetti Manuel D, Hsiung Yichun, MacKinnon Roderick",
                "protein_xref_pubmed",
                "22139424",
                "protein_xref_uniprotkb",
                "B7ZC96"
            ]
        ]
    },
    "readme": "Name\n   - Zebrafish Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Zebrafish domain and regions citations (UniProtKB) dataset contains Danio rerio [taxid:7955] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: zebrafish_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: zebrafish_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_protein_citations_domains_uniprotkb.csv\n      Name: zebrafish_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"12\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/zebrafish_protein_citations_domains_uniprotkb.csv"
}