{
    "bcoid": "GLY_001715",
    "title": "SARS-CoV2 Domains and Regions Citations (UniProtKB)",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCov) domain and regions citations (UniProtKB) dataset contains ...",
    "filename_list": "sarscov2_protein_citations_domains_uniprotkb.csv",
    "filename": "sarscov2_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Severe acute respiratory syndrome coronavirus 2"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P0DTC2-1...",
                "Structural b..."
            ],
            [
                "P0DTC9-1...",
                "Crystal stru..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P0DTC2-1",
                "Structural basis for the recognition of SARS-CoV-2 by full-length human ACE2.",
                "Science (New York, N.Y.)",
                "2020 Mar 27",
                "Yan R, Zhang Y, Li Y, Xia L, Guo Y, Zhou Q",
                "protein_xref_pubmed",
                "32132184",
                "protein_xref_uniprotkb",
                "P0DTC2"
            ],
            [
                "P0DTC9-1",
                "Crystal structure of SARS-CoV-2 nucleocapsid protein RNA binding domain reveals potential unique drug targeting sites.",
                "Acta pharmaceutica Sinica. B",
                "2020 Jul",
                "Kang S, Yang M, Hong Z, Zhang L, Huang Z, Chen X, He S, Zhou Z, Zhou Z, Chen Q, Yan Y, Zhang C, Shan H, Chen S",
                "protein_xref_pubmed",
                "32363136",
                "protein_xref_uniprotkb",
                "P0DTC9"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCov) domain and regions citations (UniProtKB) dataset contains Severe acute respiratory syndrome coronavirus 2 [taxid:2697049] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: sarscov2_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov2_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: sarscov2_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov2_protein_citations_domains_uniprotkb.csv\n      Name: sarscov2_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov2_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"3\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/sarscov2_protein_citations_domains_uniprotkb.csv"
}