{
    "bcoid": "GLY_001711",
    "title": "Rat Domains and Regions Citations (UniProtKB)",
    "description": "The Rat domain and regions citations (UniProtKB) dataset contains Rattus norvegicus [taxid:10116] publication ...",
    "filename_list": "rat_protein_citations_domains_uniprotkb.csv",
    "filename": "rat_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "O54874-1...",
                "Myotonic dys..."
            ],
            [
                "F1LQ48-1...",
                "The Signatur..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "O54874-1",
                "Myotonic dystrophy kinase-related Cdc42-binding kinase acts as a Cdc42 effector in promoting cytoskeletal reorganization.",
                "Molecular and cellular biology",
                "1998 Jan",
                "Leung T, Chen XQ, Tan I, Manser E, Lim L",
                "protein_xref_pubmed",
                "9418861",
                "protein_xref_uniprotkb",
                "O54874"
            ],
            [
                "F1LQ48-1",
                "The Signature of the Five-Stranded vRRM Fold Defined by Functional, Structural and Computational Analysis of the hnRNP L Protein.",
                "Journal of molecular biology",
                "2015-09-25",
                "Blatter Markus, Dunin-Horkawicz Stanislaw, Grishina Inna, Maris Christophe, Thore Stephane, Maier Timm, Bindereif Albrecht, Bujnicki Janusz M, Allain Fr\u00e9d\u00e9ric H-T",
                "protein_xref_pubmed",
                "26051023",
                "protein_xref_uniprotkb",
                "F1LQ48"
            ]
        ]
    },
    "readme": "Name\n   - Rat Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Rat domain and regions citations (UniProtKB) dataset contains Rattus norvegicus [taxid:10116] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: rat_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_citations_domains_uniprotkb.csv\n      Name: rat_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"47\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/rat_protein_citations_domains_uniprotkb.csv"
}