{
    "bcoid": "GLY_001700",
    "title": "Hamster Domains and Regions Citations (UniProtKB)",
    "description": "The Hamster domain and regions citations (UniProtKB) dataset contains Cricetulus griseus [taxid:10029] ...",
    "filename_list": "hamster_protein_citations_domains_uniprotkb.csv",
    "filename": "hamster_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Cricetulus griseus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P97260-1...",
                "Insig requir..."
            ],
            [
                "Q920N5-1...",
                "Peroxisomal ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P97260-1",
                "Insig required for sterol-mediated inhibition of Scap/SREBP binding to COPII proteins in vitro.",
                "The Journal of biological chemistry",
                "2005-07-15",
                "Sun Li-Ping, Li Lu, Goldstein Joseph L, Brown Michael S",
                "protein_xref_pubmed",
                "15899885",
                "protein_xref_uniprotkb",
                "P97260"
            ],
            [
                "Q920N5-1",
                "Peroxisomal targeting signal receptor Pex5p interacts with cargoes and import machinery components in a spatiotemporally differentiated manner: conserved Pex5p WXXXF/Y motifs are critical for matrix protein import.",
                "Molecular and cellular biology",
                "2002-03",
                "Otera Hidenori, Setoguchi Kiyoko, Hamasaki Maho, Kumashiro Toshitaka, Shimizu Nobuhiro, Fujiki Yukio",
                "protein_xref_pubmed",
                "11865044",
                "protein_xref_uniprotkb",
                "Q920N5"
            ]
        ]
    },
    "readme": "Name\n   - Hamster Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Hamster domain and regions citations (UniProtKB) dataset contains Cricetulus griseus [taxid:10029] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: hamster_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hamster_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: hamster_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hamster_protein_citations_domains_uniprotkb.csv\n      Name: hamster_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hamster_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"3\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/hamster_protein_citations_domains_uniprotkb.csv"
}