{
    "bcoid": "GLY_001675",
    "title": "Pig Binding Sites Citations (UniProtKB)",
    "description": "The Pig binding sites citations (UniProtKB) dataset contains Sus scrofa [taxid:9823] publication information ...",
    "filename_list": "pig_protein_citations_binding_sites_uniprotkb.csv",
    "filename": "pig_protein_citations_binding_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Sus scrofa"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Binding sites citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "A5GZW8-1...",
                "Crystal stru..."
            ],
            [
                "D0VWV4-1...",
                "Crystal stru..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A5GZW8-1",
                "Crystal structure of mitochondrial respiratory membrane protein complex II.",
                "Cell",
                "2005-07-01",
                "Sun Fei, Huo Xia, Zhai Yujia, Wang Aojin, Xu Jianxing, Su Dan, Bartlam Mark, Rao Zihe",
                "protein_xref_pubmed",
                "15989954",
                "protein_xref_uniprotkb",
                "A5GZW8"
            ],
            [
                "D0VWV4-1",
                "Crystal structure of mitochondrial respiratory membrane protein complex II.",
                "Cell",
                "2005-07-01",
                "Sun Fei, Huo Xia, Zhai Yujia, Wang Aojin, Xu Jianxing, Su Dan, Bartlam Mark, Rao Zihe",
                "protein_xref_pubmed",
                "15989954",
                "protein_xref_uniprotkb",
                "D0VWV4"
            ]
        ]
    },
    "readme": "Name\n   - Pig Binding Sites Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Pig binding sites citations (UniProtKB) dataset contains Sus scrofa [taxid:9823] publication information for UniProtKB canonical protein binding sites provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB, ChEBI and GlyGen.\n\nDescription Domain\n   Keywords\n   - binding sites\n   - ligands\n   - metal binding sites\n   - calcium binding sites\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the Binding_Site_Annotation triple then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: pig_protein_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_binding_sites_uniprotkb.csv\n   Output Subdomain\n      Name: pig_protein_citations_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_citations_binding_sites_uniprotkb.csv\n      Name: pig_protein_citations_binding_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_citations_binding_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"38\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/pig_protein_citations_binding_sites_uniprotkb.csv"
}