{
    "bcoid": "GLY_001671",
    "title": "Human Binding Sites Citations (UniProtKB)",
    "description": "The Human binding sites citations (UniProtKB) dataset contains Homo sapiens [taxid:9606] publication ...",
    "filename_list": "human_protein_citations_binding_sites_uniprotkb.csv",
    "filename": "human_protein_citations_binding_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Binding sites citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0AVT1-1...",
                "Structures o..."
            ],
            [
                "A0AVT1-1...",
                "Crystal stru..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A0AVT1-1",
                "Structures of UBA6 explain its dual specificity for ubiquitin and FAT10.",
                "Nature communications",
                "2022-08-15",
                "Truongvan Ngoc, Li Shurong, Misra Mohit, Kuhn Monika, Schindelin Hermann",
                "protein_xref_pubmed",
                "35970836",
                "protein_xref_uniprotkb",
                "A0AVT1"
            ],
            [
                "A0AVT1-1",
                "Crystal structures reveal catalytic and regulatory mechanisms of the dual-specificity ubiquitin/FAT10 E1 enzyme Uba6.",
                "Nature communications",
                "2022-08-19",
                "Yuan Lingmin, Gao Fei, Lv Zongyang, Nayak Digant, Nayak Anindita, Santos Bury Priscila Dos, Cano Kristin E, Jia Lijia, Oleinik Natalia, Atilgan Firdevs Cansu, Ogretmen Besim, Williams Katelyn M, Davies Christopher, El Oualid Farid, Wasmuth Elizabeth V, Olsen Shaun K",
                "protein_xref_pubmed",
                "35986001",
                "protein_xref_uniprotkb",
                "A0AVT1"
            ]
        ]
    },
    "readme": "Name\n   - Human Binding Sites Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Human binding sites citations (UniProtKB) dataset contains Homo sapiens [taxid:9606] publication information for UniProtKB canonical protein binding sites provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB, ChEBI and GlyGen.\n\nDescription Domain\n   Keywords\n   - binding sites\n   - ligands\n   - metal binding sites\n   - calcium binding sites\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the Binding_Site_Annotation triple then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_protein_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_binding_sites_uniprotkb.csv\n   Output Subdomain\n      Name: human_protein_citations_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_citations_binding_sites_uniprotkb.csv\n      Name: human_protein_citations_binding_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_citations_binding_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1543\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/human_protein_citations_binding_sites_uniprotkb.csv"
}