{
    "bcoid": "GLY_001549",
    "title": "Ebola (EBOV) Protein Citations (UniProtKB)",
    "description": "The Ebola (EBOV) Protein Citations dataset contains publication information for Zaire ebolavirus (strain ...",
    "filename_list": "ebov_protein_citations_uniprotkb.csv",
    "filename": "ebov_protein_citations_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Zaire ebolavirus (strain Mayinga-76)"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P18272-1...",
                "Structure an..."
            ],
            [
                "P18272-1...",
                "Assembly of ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P18272-1",
                "Structure and assembly of the Ebola virus nucleocapsid.",
                "Nature",
                "2017-11-16",
                "Wan William, Kolesnikova Larissa, Clarke Mairi, Koehler Alexander, Noda Takeshi, Becker Stephan, Briggs John A G",
                "protein_xref_pubmed",
                "29144446",
                "protein_xref_uniprotkb",
                "P18272"
            ],
            [
                "P18272-1",
                "Assembly of the Ebola Virus Nucleoprotein from a Chaperoned VP35 Complex.",
                "Cell reports",
                "2015-07-07",
                "Kirchdoerfer Robert N, Abelson Dafna M, Li Sheng, Wood Malcolm R, Saphire Erica Ollmann",
                "protein_xref_pubmed",
                "26119732",
                "protein_xref_uniprotkb",
                "P18272"
            ]
        ]
    },
    "readme": "Name\n   - Ebola (EBOV) Protein Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Ebola (EBOV) Protein Citations dataset contains publication information for Zaire ebolavirus (strain Mayinga-76) [taxid:128952] UniProtKB accessions that includes PMID, journal name, date and author and title. Publications of large scale studies, and high frequency publications pertaining to genome sequencing, cDNA, chromosomes have been filtered out. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB publication data from the triplestore containing triples from nt file to retrieve the publication information associated with the UniProtKB accession and maps it to the UniProtKB canonical accessions. The script also filters out publications of large scale studies, and high frequency publications pertaining to DNA sequencing, cDNA, chromosomes using blacklisted PMIDs file.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: ebov_protein_function_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_function_uniprotkb.csv\n      Name: ebov_protein_ptm_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_ptm_annotation_uniprotkb.csv\n      Name: ebov_protein_site_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_site_annotation_uniprotkb.csv\n      Name: uniprot-proteome-zaire-ebolavirus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-zaire-ebolavirus.nt\n   Output Subdomain\n      Name: ebov_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_citations_uniprotkb.csv\n      Name: ebov_protein_citations_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_citations_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"9\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/ebov_protein_citations_uniprotkb.csv"
}