{
    "bcoid": "GLY_001381",
    "title": "Hamster Protein Citations (RefSeq)",
    "description": "The Hamster Protein Citations (RefSeq) datasets contains Cricetulus griseus [taxid:10029] UniProtKB accessions ...",
    "filename_list": "hamster_protein_citations_refseq.csv",
    "filename": "hamster_protein_citations_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Cricetulus griseus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q9R152-1...",
                "The absence ..."
            ],
            [
                "G3I8R9-1...",
                "AMPylation t..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q9R152-1",
                "The absence of Ku but not defects in classical non-homologous end-joining is required to trigger PARP1-dependent end-joining.",
                "DNA repair",
                "2013-12",
                "Mansour Wael Y, Borgmann K, Petersen C, Dikomey Ekkehard, Dahm-Daphi Jochen",
                "protein_xref_pubmed",
                "24210699",
                "protein_xref_refseq",
                "NP_001233650"
            ],
            [
                "G3I8R9-1",
                "AMPylation targets the rate-limiting step of BiP's ATPase cycle for its functional inactivation.",
                "eLife",
                "2017-10-24",
                "Preissler Steffen, Rohland Lukas, Yan Yahui, Chen Ruming, Read Randy J, Ron David",
                "protein_xref_pubmed",
                "29064368",
                "protein_xref_refseq",
                "NP_001233668"
            ]
        ]
    },
    "readme": "Name\n   - Hamster Protein Citations (RefSeq)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The Hamster Protein Citations (RefSeq) datasets contains Cricetulus griseus [taxid:10029] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors of corresponding RefSeq accessions). If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - RefSeq\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accessions to the UniProtKB Canonical accessions. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: hamster_protein_function_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hamster_protein_function_refseq.csv\n   Output Subdomain\n      Name: hamster_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hamster_protein_citations_refseq.csv\n      Name: hamster_protein_citations_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hamster_protein_citations_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"11\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/hamster_protein_citations_refseq.csv"
}