{
    "bcoid": "GLY_001007",
    "title": "Chicken Protein Site Annotation",
    "description": "The Chicken Protein Site Annotation (UniProtKB) dataset contains Gallus gallus [taxid:9031] site annotations ...",
    "filename_list": "chicken_protein_site_annotation_uniprotkb.csv",
    "filename": "chicken_protein_site_annotation_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "site annotation"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "annotation"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A3Q2UNZ0-1...",
                "KCNJ6..."
            ],
            [
                "A0A3Q2UNZ0-1...",
                "KCNJ6..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "gene_symbol..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "gene_symbol"
                },
                {
                    "type": "string",
                    "label": "ann_type"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "annotation"
                },
                {
                    "type": "string",
                    "label": "ecoid"
                },
                {
                    "type": "string",
                    "label": "ref_aa"
                },
                {
                    "type": "string",
                    "label": "alt_aa"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                }
            ],
            [
                "A0A3Q2UNZ0-1",
                "KCNJ6",
                "Site_Annotation",
                "182",
                "182",
                "Role in the control of polyamine-mediated channel gating and in the blocking by intracellular magnesium",
                "ECO_0000256",
                "N",
                "",
                "protein_xref_uniprotkb",
                "A0A8V0YI82"
            ],
            [
                "A0A3Q2UNZ0-1",
                "KCNJ6",
                "Site_Annotation",
                "166",
                "166",
                "Role in the control of polyamine-mediated channel gating and in the blocking by intracellular magnesium",
                "ECO_0000256",
                "E",
                "",
                "protein_xref_uniprotkb",
                "A0A8V0YKZ6"
            ]
        ]
    },
    "readme": "Name\n   - Chicken Protein Site Annotation\n\nVersion\n   - v-2.12.1\n\nModified on\n   - 2024-05-17T11:24:21.685Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Protein Site Annotation (UniProtKB) dataset contains Gallus gallus [taxid:9031] site annotations for UniProtKB canonical accessions. The dataset contains information about UniProtKB annotations with their amino acid range. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - site annotation\n   - amino acid range\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script extracts the site annotation triples from the triplestore for the UniProtKB canonical sequnces asnd extracts as a dataset in a csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: chicken_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_masterlist.csv\n      Name: uniprot-proteome-gallus-gallus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-gallus-gallus.nt\n   Output Subdomain\n      Name: chicken_protein_site_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_site_annotation_uniprotkb.csv\n      Name: chicken_protein_site_annotation_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_site_annotation_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"2182\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/chicken_protein_site_annotation_uniprotkb.csv"
}