{
    "bcoid": "GLY_001004",
    "title": "Chicken UniProtKB Xref InterPro",
    "description": "The Chicken UniProtKB Xref InterPro contains Gallus gallus [taxid:9301] UniProtKB canonical accessions ...",
    "filename_list": "chicken_protein_xref_interpro.csv",
    "filename": "chicken_protein_xref_interpro.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Interpro cross-references"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "xref_"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A3Q3AHL1-1...",
                "protein_xref..."
            ],
            [
                "A0A3Q3AHL1-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "A0A3Q3AHL1-1",
                "protein_xref_interpro",
                "IPR013087",
                ""
            ],
            [
                "A0A3Q3AHL1-1",
                "protein_xref_interpro",
                "IPR036236",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Chicken UniProtKB Xref InterPro\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2019-03-15T12:05:44.324142\n\nModified on\n   - 2024-05-21T14:54:23.305Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken UniProtKB Xref InterPro contains Gallus gallus [taxid:9301] UniProtKB canonical accessions cross-referenced to InterPro database accessions/identifiers.\n   - InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to new protein sequences in order to functionally characterise them.\n\nDescription Domain\n   Keywords\n   - protein family\n   - protein domain\n   - protein functional site\n   - InterPro\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB accessions that are cross-referenced to InterPro database accessions/identifiers from the triplestore containing triples from nt file and maps to the UniProtKB canonical accessions and extracts the data as a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-gallus-gallus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-gallus-gallus.nt\n   Output Subdomain\n      Name: chicken_protein_xref_interpro.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_xref_interpro.csv\n      Name: chicken_protein_xref_interpro.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_xref_interpro.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"17285\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/chicken_protein_xref_interpro.csv"
}