{
    "bcoid": "GLY_000967",
    "title": "Chicken Gene Locus (Ensembl)",
    "description": "The Chicken Gene Locus (Ensembl) contains Gallus gallus [taxid:9031] UniProtKB canonical accessions mapped ...",
    "filename_list": "chicken_protein_genelocus.csv",
    "filename": "chicken_protein_genelocus.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Gene Coordinates"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "locus"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A3Q3AHL1-1...",
                "PRDM16..."
            ],
            [
                "A0A8V0X519-1...",
                "AP1B1..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "gene_symbol..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "gene_symbol"
                },
                {
                    "type": "string",
                    "label": "ensembl_gene_id"
                },
                {
                    "type": "string",
                    "label": "chromosome_id"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "strand"
                }
            ],
            [
                "A0A3Q3AHL1-1",
                "PRDM16",
                "ENSGALG00010019648",
                "21",
                "1030521",
                "1318643",
                "1"
            ],
            [
                "A0A8V0X519-1",
                "AP1B1",
                "ENSGALG00010000323",
                "15",
                "11132267",
                "11146088",
                "0"
            ]
        ]
    },
    "readme": "Name\n   - Chicken Gene Locus (Ensembl)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2019-01-23T17:21:05.950210\n\nModified on\n   - 2024-05-21T15:48:56.218Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Gene Locus (Ensembl) contains Gallus gallus [taxid:9031] UniProtKB canonical accessions mapped to the corresponding ensembl Gene ID, chromosome ID along with the gene's start and end position on the chromosome. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - gene coordinates\n   - chromosome\n   - start position\n   - end position\n   - Ensembl\n   - strand\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are mapped to ENSEMBL Gene identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: chicken_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_masterlist.csv\n      Name: uniprot-proteome-gallus-gallus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-gallus-gallus.nt\n   Output Subdomain\n      Name: chicken_protein_genelocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_genelocus.csv\n      Name: chicken_protein_genelocus.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_genelocus.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"12997\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/chicken_protein_genelocus.csv"
}