{
    "bcoid": "GLY_000509",
    "title": "Human Somatic Mutations LOG and GOG effect",
    "description": "",
    "filename_list": "human_protein_mutation_somatic_glycoeffect.csv",
    "filename": "human_protein_mutation_somatic_glycoeffect.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Somatic Mutations LOG-GOG"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "mutation_"
        ]
    },
    "minitable": {
        "content": [
            [
                "P06731-1...",
                "46..."
            ],
            [
                "P06731-1...",
                "46..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "aa_pos..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "aa_pos"
                },
                {
                    "type": "string",
                    "label": "dbsnp_id"
                },
                {
                    "type": "string",
                    "label": "cosmic_id"
                },
                {
                    "type": "string",
                    "label": "description"
                },
                {
                    "type": "string",
                    "label": "cytogenic_band"
                },
                {
                    "type": "string",
                    "label": "chr_id"
                },
                {
                    "type": "string",
                    "label": "chr_pos"
                },
                {
                    "type": "string",
                    "label": "ref_nt"
                },
                {
                    "type": "string",
                    "label": "alt_nt"
                },
                {
                    "type": "string",
                    "label": "ref_aa"
                },
                {
                    "type": "string",
                    "label": "alt_aa"
                },
                {
                    "type": "string",
                    "label": "begin_aa_pos"
                },
                {
                    "type": "string",
                    "label": "end_aa_pos"
                },
                {
                    "type": "string",
                    "label": "minor_allelic_frequency"
                },
                {
                    "type": "string",
                    "label": "mutation_type"
                },
                {
                    "type": "string",
                    "label": "polyphen_score"
                },
                {
                    "type": "string",
                    "label": "polyphen_prediction"
                },
                {
                    "type": "string",
                    "label": "sift_score"
                },
                {
                    "type": "string",
                    "label": "sift_prediction"
                },
                {
                    "type": "string",
                    "label": "somatic_status"
                },
                {
                    "type": "string",
                    "label": "disease"
                },
                {
                    "type": "string",
                    "label": "disease_description"
                },
                {
                    "type": "string",
                    "label": "disease_xrefs"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "mim_id"
                },
                {
                    "type": "string",
                    "label": "do_id"
                },
                {
                    "type": "string",
                    "label": "filter_flags"
                },
                {
                    "type": "string",
                    "label": "protein_class"
                },
                {
                    "type": "string",
                    "label": "is_known_glycoprotein"
                },
                {
                    "type": "string",
                    "label": "motif_start"
                },
                {
                    "type": "string",
                    "label": "ref_motif"
                },
                {
                    "type": "string",
                    "label": "alt_motif"
                },
                {
                    "type": "string",
                    "label": "effect"
                }
            ],
            [
                "P06731-1",
                "46",
                "rs140477498",
                "",
                "",
                "19q13.2",
                "19",
                "41709751",
                "A",
                "null",
                "A",
                "T",
                "46",
                "46",
                "",
                "missense",
                "",
                "",
                "",
                "",
                "1",
                "",
                "",
                "",
                "protein_xref_dbsnp",
                "rs140477498",
                "",
                "",
                "Somatic mutation passed 1 filters: n-glyco-sequon-gain (NVA->NVT).",
                "none",
                "yes",
                "44",
                "NVA",
                "NVT",
                "n-glyco-sequon-gain"
            ],
            [
                "P06731-1",
                "46",
                "rs140477498",
                "",
                "",
                "19q13.2",
                "19",
                "41709751",
                "A",
                "null",
                "A",
                "T",
                "46",
                "46",
                "",
                "missense",
                "",
                "",
                "",
                "",
                "1",
                "",
                "",
                "",
                "protein_xref_1000genomes",
                "rs140477498",
                "",
                "",
                "Somatic mutation passed 1 filters: n-glyco-sequon-gain (NVA->NVT).",
                "none",
                "yes",
                "44",
                "NVA",
                "NVT",
                "n-glyco-sequon-gain"
            ]
        ]
    },
    "readme": "Name\n   - Human Somatic Mutations LOG and GOG effect\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2020-06-25T13:37:33.727471\n\nModified on\n   - 2024-05-17T11:24:02.934Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nExecution Domain\n   Scripts\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_masterlist.csv\n      Name: aadict.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/aadict.csv\n   Output Subdomain\n      Name: human_protein_mutation_somatic_glycoeffect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_mutation_somatic_glycoeffect.csv\n      Name: human_protein_mutation_somatic_glycoeffect.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_mutation_somatic_glycoeffect.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"5780\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/human_protein_mutation_somatic_glycoeffect.csv"
}