{
    "bcoid": "GLY_000484",
    "title": "Mouse Proteoform Citations (GlyConnect)",
    "description": "The Mouse Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ...",
    "filename_list": "mouse_proteoform_citations_glycosylation_sites_glyconnect.csv",
    "filename": "mouse_proteoform_citations_glycosylation_sites_glyconnect.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q6PFE7-1...",
                "Capturing si..."
            ],
            [
                "Q6PHS9-1...",
                "Capturing si..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "Q6PFE7-1",
                "Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis.",
                "Nature communications",
                "2019 Mar 21",
                "Riley NM, Hebert AS, Westphall MS, Coon JJ",
                "protein_xref_pubmed",
                "30899004",
                "protein_xref_glyconnect",
                "2434",
                "G74724QE",
                ""
            ],
            [
                "Q6PHS9-1",
                "Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis.",
                "Nature communications",
                "2019 Mar 21",
                "Riley NM, Hebert AS, Westphall MS, Coon JJ",
                "protein_xref_pubmed",
                "30899004",
                "protein_xref_glyconnect",
                "2436",
                "G39188ZX",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Mouse Proteoform Citations (GlyConnect)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2020-04-28T11:04:45.973121\n\nModified on\n   - 2024-05-17T11:24:02.295Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000329. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - GlyConnect\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n   Output Subdomain\n      Name: mouse_proteoform_citations_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_proteoform_citations_glycosylation_sites_glyconnect.csv\n      Name: mouse_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"727\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/mouse_proteoform_citations_glycosylation_sites_glyconnect.csv"
}