{
    "bcoid": "GLY_000457",
    "title": "Mouse Protein Signal Peptide",
    "description": "The Mouse Protein Signal Peptide dataset contains Mus musculus [taxid:10090] signal peptide information ...",
    "filename_list": "mouse_protein_signalp_annotation.csv, mouse_protein_signalp_peptidesequences.fasta, mouse_protein_signalp_cleavedsequences.fasta, mouse_protein_signalp_fullsequences.fasta",
    "filename": "mouse_protein_signalp_annotation.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Signal Peptide"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "annotation",
            "sequence"
        ]
    },
    "minitable": {
        "content": [
            [
                "P01634-1...",
                "..."
            ],
            [
                "Q60750-1...",
                "Epha1..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "gene_symbol..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "gene_symbol"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_recommended_name"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_length"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_signalp_length"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_signalp_cleaved_length"
                },
                {
                    "type": "string",
                    "label": "signalp_start_pos"
                },
                {
                    "type": "string",
                    "label": "signalp_end_pos"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_sequence"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_signalp_sequence"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_signalp_cleaved_sequence"
                },
                {
                    "type": "string",
                    "label": "eco_id"
                },
                {
                    "type": "string",
                    "label": "evidence"
                }
            ],
            [
                "P01634-1",
                "",
                "Ig kappa chain V-V region MOPC 21",
                "136",
                "29",
                "107",
                "1",
                "29",
                "MHQTSMGIKMESHTLVFISILLCLYGADGNIVMTQSPKSMSMSVGERVTLTCKASENVVTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQAEDLADYHCGQGYSYPYTFGGGTKLEIK",
                "MHQTSMGIKMESHTLVFISILLCLYGADG",
                "NIVMTQSPKSMSMSVGERVTLTCKASENVVTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQAEDLADYHCGQGYSYPYTFGGGTKLEIK",
                "ECO_0000269",
                "4638343"
            ],
            [
                "Q60750-1",
                "Epha1",
                "receptor protein-tyrosine kinase",
                "977",
                "26",
                "951",
                "1",
                "26",
                "MERRWPLGLALLLLLLCAPLPPGARAEEVTLMDTSTAQGELGWLLDPPETGWSEVQQMLNGTPLYMYQDCPIQEGGDTDHWLRSNWIYRGEEASRIYVELQFTVRDCKSFPGGAGPLGCKETFNLFYMESDQDVGIQLRRPLFQKVTTVAADQSFTIRDLASGSVKLNVERCSLGHLTRRGLYLAFHNPGSCVALVSVRVFYQRCAETVHGLAHFPDTLPGPGGLVEVAGTCLSHAQISLGSSGTPRMHCSPDGEWLVPVGQCQCEPGYEESSGNVGCTACPTGFYRVDMNTLRCLKCPQHSIAESEGSTICTCENGHYRAPGEGPQVACTRPPSAPQNLSFSTSGTQLSLRWEPPRDTGGRHDIRYSVECLQCRGIAQDGGPCQPCGKGVHFSPAASGLTTSTVQVQGLEPYANYTFTVKSQNRVSGLDSSSPSSASLSINMGHAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPVSRSLTGGEIVAVIFGLLLGIALLIGIYVFRSRRGQRQRQQRQRERTTNVDREDKLWLKPYVDLQAYEDPAQGALDFAQELDPAWLIVDTVIGEGEFGEVYRGALRLPSQDCKTVAIKTLKDTSPDGYWWNFLREATIMGQFNHPHILRLEGVITKRKPIMIITEFMENGALDAFLKEREDQLAPGQLVAMLLGIASGMNCLSGHNYVHRDLAARNILVNQNLCCKVSDFGLTRLLDDFDGTYETQGGKIPIRWTAPEAIAHRIFTTASDVWSFGIVMWEVLSFGDKPYGEMSNQEVMKSIEDGYRLPPPVDCPAPLYELMKNCWAYDRARRPHFLQLQAHLEQLLTDPHSLRTIANFDPRVTLRLPSLSGSDGIPYRSVSEWLESIRMKRYILHFRSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQGFKD",
                "MERRWPLGLALLLLLLCAPLPPGARA",
                "EEVTLMDTSTAQGELGWLLDPPETGWSEVQQMLNGTPLYMYQDCPIQEGGDTDHWLRSNWIYRGEEASRIYVELQFTVRDCKSFPGGAGPLGCKETFNLFYMESDQDVGIQLRRPLFQKVTTVAADQSFTIRDLASGSVKLNVERCSLGHLTRRGLYLAFHNPGSCVALVSVRVFYQRCAETVHGLAHFPDTLPGPGGLVEVAGTCLSHAQISLGSSGTPRMHCSPDGEWLVPVGQCQCEPGYEESSGNVGCTACPTGFYRVDMNTLRCLKCPQHSIAESEGSTICTCENGHYRAPGEGPQVACTRPPSAPQNLSFSTSGTQLSLRWEPPRDTGGRHDIRYSVECLQCRGIAQDGGPCQPCGKGVHFSPAASGLTTSTVQVQGLEPYANYTFTVKSQNRVSGLDSSSPSSASLSINMGHAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPVSRSLTGGEIVAVIFGLLLGIALLIGIYVFRSRRGQRQRQQRQRERTTNVDREDKLWLKPYVDLQAYEDPAQGALDFAQELDPAWLIVDTVIGEGEFGEVYRGALRLPSQDCKTVAIKTLKDTSPDGYWWNFLREATIMGQFNHPHILRLEGVITKRKPIMIITEFMENGALDAFLKEREDQLAPGQLVAMLLGIASGMNCLSGHNYVHRDLAARNILVNQNLCCKVSDFGLTRLLDDFDGTYETQGGKIPIRWTAPEAIAHRIFTTASDVWSFGIVMWEVLSFGDKPYGEMSNQEVMKSIEDGYRLPPPVDCPAPLYELMKNCWAYDRARRPHFLQLQAHLEQLLTDPHSLRTIANFDPRVTLRLPSLSGSDGIPYRSVSEWLESIRMKRYILHFRSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQGFKD",
                "ECO_0000256",
                "SignalP"
            ]
        ]
    },
    "readme": "Name\n   - Mouse Protein Signal Peptide\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2020-04-03T15:52:11.121013\n\nModified on\n   - 2024-05-17T11:24:01.238Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Protein Signal Peptide dataset contains Mus musculus [taxid:10090] signal peptide information for the UniProtKB canonical accessions. The dataset contains protein information, signal peptide sequence, signal peptide length, signal peptide  start and end position, cleaved protein sequence, eco ids and pmids. The dataset contains related files in the output subdomain that includes log file containing accessions that do not have signal peptide information and processed protein sequence\u2019s files in fasta format. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - signal peptide\n   - ptm processing\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script extracts the signal peptide information from the triplestore and maps to the UniProtKB canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-mus-musculus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-mus-musculus.nt\n      Name: uniprot-proteome-mus-musculus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-mus-musculus.nt\n      Name: uniprot-proteome-mus-musculus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-mus-musculus.nt\n      Name: uniprot-proteome-mus-musculus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-mus-musculus.nt\n   Output Subdomain\n      Name: mouse_protein_signalp_annotation.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_signalp_annotation.csv\n      Name: mouse_protein_signalp_peptidesequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_signalp_peptidesequences.fasta\n      Name: mouse_protein_signalp_cleavedsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_signalp_cleavedsequences.fasta\n      Name: mouse_protein_signalp_fullsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_signalp_fullsequences.fasta\n      Name: mouse_protein_signalp_annotation.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_signalp_annotation.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"4079\"\n      Name: mouse_protein_signalp_peptidesequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_signalp_peptidesequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"6391\"\n      Name: mouse_protein_signalp_cleavedsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_signalp_cleavedsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"6391\"\n      Name: mouse_protein_signalp_fullsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_signalp_fullsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"6391\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/mouse_protein_signalp_annotation.csv"
}