{
    "bcoid": "GLY_000028",
    "title": "Gene Expression (Normal)",
    "description": "The Gene Expression (Normal) dataset contains the normal expression information of Homo sapiens [taxid:9606] ...",
    "filename_list": "human_protein_expression_normal.csv",
    "filename": "human_protein_expression_normal.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Normal Gene Expression"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "others"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A075B6H5-1...",
                "UBERON:00009..."
            ],
            [
                "A0A075B6H5-1...",
                "UBERON:00020..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "uberon_anato..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "uberon_anatomical_id"
                },
                {
                    "type": "string",
                    "label": "uberon_anatomical_name"
                },
                {
                    "type": "string",
                    "label": "uberon_developmental_id"
                },
                {
                    "type": "string",
                    "label": "uberon_developmental_name"
                },
                {
                    "type": "string",
                    "label": "expression_level_gene_relative"
                },
                {
                    "type": "string",
                    "label": "expression_level_anatomical_relative"
                },
                {
                    "type": "string",
                    "label": "call_quality"
                },
                {
                    "type": "string",
                    "label": "expression_rank_score"
                },
                {
                    "type": "string",
                    "label": "expression_score"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                }
            ],
            [
                "A0A075B6H5-1",
                "UBERON:0000945",
                "stomach",
                "HsapDv:0000087",
                "human adult stage (human)",
                "LOW",
                "LOW",
                "SILVER",
                "4.60E+04",
                "16.41",
                "protein_xref_bgee",
                "ENSG00000205274"
            ],
            [
                "A0A075B6H5-1",
                "UBERON:0002046",
                "thyroid gland",
                "HsapDv:0000087",
                "human adult stage (human)",
                "ABSENT",
                "ABSENT",
                "SILVER",
                "4.54E+04",
                "17.5",
                "protein_xref_bgee",
                "ENSG00000205274"
            ]
        ]
    },
    "readme": "Name\n   - Gene Expression (Normal)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2019-01-23T17:21:05.895453\n\nModified on\n   - 2024-12-10T16:54:49.405Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The Gene Expression (Normal) dataset contains the normal expression information of Homo sapiens [taxid:9606] genes from BioXpress database. The GlyGen Interface shows the normal gene expression information for select UBERON ids only which are mapped to corresponding DOIDs and have gene expression in cancer information for those DOID. For more gene expression information of other UBERON IDs (tissues) for a given gene, please refer to BioXpress - https://hive.biochemistry.gwu.edu/bioxpress. BioXpress is a gene/miRNA expression and disease association database with expression levels mapped to genes or miRNAs. The current version of BioXpress contains only genes associated with cancer. If you are using this dataset please give proper attribution to GlyGen and BioXpress\n\nDescription Domain\n   Keywords\n   - normal gene expression\n   - BioXpress\n   - UBERON\n   - tissue\n   - Bgee\n\n   Pipeline Steps\n   - Step-1: The script extracts the expression information and maps the UniProtKB accession/gene symbol to UniProtKB canonical expression\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_masterlist.csv\n      Name: human_normal_expression_custom_filtered.csv\n      URI: https:/data.glygen.org/ln2downloads/bioxpress/2021_08/human_normal_expression_custom_filtered.csv\n   Output Subdomain\n      Name: human_protein_expression_normal.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_expression_normal.csv\n      Name: human_protein_expression_normal.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_expression_normal.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"18713\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/human_protein_expression_normal.csv"
}