{
    "object_id": "https://biocomputeobject.org/GLY_001636/v-2.12.1",
    "etag": "4bf152f4ebdeb1d4077a7eb28299ed24",
    "spec_version": "1.3.0",
    "provenance_domain": {
        "name": "Chicken Lectin UniLectin3D Citations",
        "version": "v-2.12.1",
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "modified": "2025-10-20T14:18:06.520Z",
        "contributors": [
            {
                "name": "Jeet Vora",
                "affiliation": "The George Washington University",
                "email": "jeetvora@gwu.edu",
                "contribution": [
                    "createdBy"
                ]
            },
            {
                "name": "Robel Kahsay",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "rykahsay@gwu.edu"
            },
            {
                "name": "Urnisha Bhuiyan",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "sbhuiyan28@email.gwu.edu"
            },
            {
                "name": "Kate Warner",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "k.warner1@gwu.edu"
            }
        ]
    },
    "usability_domain": [
        "The following dataset contains the citations provided as evidence for each lectin class associated with Gallus gallus [TaxID: 9031] provided by UniLectin3D. UniLectin3D (https://unilectin.unige.ch/unilectin3D/) is a manually curated database of three-dimensional structures of carbohydrate-binding proteins, known as lectins. It classifies lectins by organism origin, protein fold, and binding family, providing structural details on interactions with glycan ligands as part of the broader UniLectin portal."
    ],
    "extension_domain": [
        {
            "extension_schema": "https://www.w3id.org/biocompute/extension_domain/1.2.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Gallus gallus",
                        "category_name": "species"
                    },
                    {
                        "category_value": "Protein",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "UniLectin3D",
                        "category_name": "tag"
                    },
                    {
                        "category_value": "csv",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "internal",
                        "category_name": "scope"
                    },
                    {
                        "category_name": "file_category",
                        "category_value": "citations"
                    }
                ]
            }
        }
    ],
    "description_domain": {
        "pipeline_steps": [
            {
                "name": "make-protein-dataset.py",
                "step_number": 1,
                "input_list": [],
                "description": "The script extracts the PDB IDs from the input .tsv files and maps it to the corresponding UniProtKB accessions.",
                "prerequisite": [],
                "output_list": []
            }
        ],
        "keywords": [
            "UniLectin3D",
            "Lectins",
            "Citations"
        ]
    },
    "execution_domain": {
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py",
                    "filename": "make-protein-dataset.py"
                }
            }
        ],
        "script_driver": "manual",
        "software_prerequisites": [
            {
                "version": "2.7.5",
                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "external_data_endpoints": [],
        "environment_variables": {}
    },
    "parametric_domain": [
        {
            "value": ""
        }
    ],
    "io_domain": {
        "output_subdomain": [
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_citations_lectin_unilectin3d.csv",
                    "filename": "chicken_protein_citations_lectin_unilectin3d.csv"
                }
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_citations_lectin_unilectin3d.stat.csv",
                    "filename": "chicken_protein_citations_lectin_unilectin3d.stat.csv"
                }
            }
        ],
        "input_subdomain": [
            {
                "uri": {
                    "filename": "doi_citations.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/doi_citations.csv"
                }
            },
            {
                "uri": {
                    "filename": "chicken_protein_lectin_unilectin3d.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_lectin_unilectin3d.csv"
                }
            }
        ]
    },
    "error_domain": {}
}