{
    "object_id": "https://biocomputeobject.org/GLY_001397/v-2.12.1",
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        "license": "https://creativecommons.org/licenses/by/4.0/",
        "created": "2023-03-14T20:13:36.255Z",
        "modified": "2025-04-11T18:08:01.662Z",
        "contributors": [
            {
                "name": "Jeet Vora",
                "affiliation": "The George Washington University",
                "email": "jeetvora@gwu.edu",
                "contribution": [
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                ]
            },
            {
                "name": "Karina Martinez",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy",
                    "curatedBy"
                ],
                "email": "karinamartinez@gwu.edu"
            },
            {
                "name": "Robel Kahsay",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "rykahsay@gwu.edu"
            },
            {
                "name": "Luke Johnson",
                "affiliation": "The George Washington University",
                "contribution": [
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                ],
                "email": "luke.johnson@email.gwu.edu"
            },
            {
                "name": "Urnisha Bhuiyan",
                "affiliation": "The George Washington University",
                "contribution": [
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                ],
                "email": "sbhuiyan28@email.gwu.edu"
            },
            {
                "name": "Cyrus Au-Yeung",
                "affiliation": "The George Washington University",
                "contribution": [
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                ],
                "email": "cyruschauyeung@gwu.edu"
            },
            {
                "name": "Kate Warner",
                "affiliation": "The George Washington University",
                "contribution": [
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                ],
                "email": "k.warner1@gwu.edu"
            }
        ]
    },
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                "name": "make-protein-dataset.py",
                "step_number": 1,
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                "output_list": []
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                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_citations_species.csv",
                    "filename": "glycan_citations_species.csv"
                },
                "mediatype": "csv"
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_citations_species.stat.csv",
                    "filename": "glycan_citations_species.stat.csv"
                }
            }
        ],
        "input_subdomain": [
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                "uri": {
                    "filename": "all_blacklisted_pmids.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv"
                }
            },
            {
                "uri": {
                    "filename": "glycan_masterlist.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_masterlist.csv"
                }
            },
            {
                "uri": {
                    "filename": "glycan_species.csv",
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                }
            }
        ]
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                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py",
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                }
            }
        ],
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                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
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        ],
        "external_data_endpoints": [],
        "environment_variables": {}
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            "extension_schema": "https://www.w3id.org/biocompute/extension_domain/1.2.0/dataset/dataset_extension.json",
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                        "category_name": "molecule"
                    },
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                        "category_name": "tag"
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                        "category_value": "Homo sapiens"
                    },
                    {
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                        "category_value": "Mus musculus"
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                    {
                        "category_name": "species",
                        "category_value": "Sus scrofa"
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                    {
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                        "category_value": "Rattus"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Rattus norvegicus"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Severe acute respiratory syndrome coronavirus 2"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Saccharomyces cerevisiae"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Dictyostelium discoideum"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Hepacivirus C"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Arabidopsis thaliana"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Bos taurus"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Cricetulus griseus"
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                        "category_value": "Danio rerio"
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                        "category_name": "species",
                        "category_value": "Gallus gallus"
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    "error_domain": {}
}