{
    "object_id": "https://biocomputeobject.org/GLY_000409/v-2.12.1",
    "spec_version": "1.3.0",
    "etag": "d75921a54c8c565dcdff5749525b3dac",
    "provenance_domain": {
        "name": "3D model of SARS-CoV-2 spike glycoprotein (Video)",
        "version": "v-2.12.1",
        "created": "2020-03-31T12:11:20.452848",
        "modified": "2024-05-17T11:23:59.545Z",
        "embargo": {
            "start_time": "",
            "end_time": ""
        },
        "contributors": [
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Xiying Ding",
                "email": "xzd@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jeet Vora",
                "email": "jeetvora@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Robel Kahsay",
                "email": "rkahsay@gwu.edu"
            },
            {
                "affiliation": "Complex Carbohydrate Research Center",
                "contribution": [
                    "contributedBy"
                ],
                "name": "Dr. Robert Woods",
                "email": "rwoods.glycam@gmail.com"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Karina Martinez",
                "email": "karinamartinez@gwu.edu"
            },
            {
                "name": "Luke Johnson",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "luke.johnson@email.gwu.edu"
            },
            {
                "name": "Urnisha Bhuiyan",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "sbhuiyan28@email.gwu.edu"
            },
            {
                "name": "Cyrus Au-Yeung",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "cyruschauyeung@gwu.edu"
            },
            {
                "name": "Kate Warner",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "k.warner1@gwu.edu"
            }
        ],
        "license": "https://creativecommons.org/licenses/by/4.0/"
    },
    "usability_domain": [
        "Based on the RCSB PDB struture 6VSB (https://www.rcsb.org/structure/6vsb), a 3-D model of SARS-CoV-2 (TaxID:2697049) spike glycoprotein is generated by Prof. Dr. Robert Woods's group at the Complex Carbohydrate Research Center, University of Georgia. The 3D model can be downloaded as a .mp4 video through this GlyGen data object. For more information visit GlyGen wiki (https://wiki.glygen.org/index.php/SARS-CoV-2_spike_glycoprotein)"
    ],
    "description_domain": {
        "keywords": [
            "Glycoprotein",
            "video"
        ],
        "platform": [],
        "pipeline_steps": [
            {
                "name": "",
                "step_number": 1,
                "version": "",
                "input_list": [],
                "output_list": [],
                "prerequisite": [],
                "description": "The input video file was downloaded from the GlyGen wiki (https://wiki.glygen.org/index.php/SARS-CoV-2_spike_glycoprotein)"
            }
        ]
    },
    "execution_domain": {
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/",
                    "filename": ""
                }
            }
        ],
        "script_driver": "",
        "software_prerequisites": [
            {
                "version": "2.7.5",
                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "external_data_endpoints": [],
        "environment_variables": {}
    },
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "filename": "sarscov2_protein_swiss_gn2g2m3_speed2x.mp4",
                    "uri": "https:/data.glygen.org/ln2downloads/covid_media/03_30_2020/sarscov2_protein_swiss_gn2g2m3_speed2x.mp4"
                }
            }
        ],
        "output_subdomain": [
            {
                "mediatype": "mp4",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov2_protein_swiss_gn2g2m3_speed2x.mp4",
                    "filename": "sarscov2_protein_swiss_gn2g2m3_speed2x.mp4"
                }
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov2_protein_swiss_gn2g2m3_speed2x.stat.csv",
                    "filename": "sarscov2_protein_swiss_gn2g2m3_speed2x.stat.csv"
                }
            }
        ]
    },
    "parametric_domain": [
        {
            "step": "",
            "param": "",
            "value": ""
        }
    ],
    "error_domain": {
        "empirical_error": {},
        "algorithmic_error": {}
    },
    "extension_domain": [
        {
            "extension_schema": "https://www.w3id.org/biocompute/extension_domain/1.2.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Glycoprotein",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "Videos",
                        "category_name": "tag"
                    },
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "mp4",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "internal",
                        "category_name": "scope"
                    },
                    {
                        "category_value": "Severe acute respiratory syndrome coronavirus 2",
                        "category_name": "species"
                    },
                    {
                        "category_name": "file_category",
                        "category_value": "others"
                    }
                ]
            }
        }
    ]
}