[ { "uniprot_canonical_ac": "A0A1L1RL16-1", "uniprot_id": [ { "id": "A0A1L1RL16_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RL16", "type": "external" } ], "mass": 48981.0, "length": 426, "protein_name": "Probable G-protein coupled receptor 19", "gene_name": "GPR19", "organism": "Chicken", "refseq_name": "probable G-protein coupled receptor 19 isoform X1", "refseq_ac": [ { "id": "XP_003640478", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003640478", "type": "external" } ], "gene_names_uniprotkb": "GPR19", "gene_names_refseq": "GPR19", "protein_names_uniprotkb": "Probable G-protein coupled receptor 19", "protein_names_refseq": "probable G-protein coupled receptor 19 isoform X1", "tax_id": 9031, "disease": "", "pathway": " (gga:100857902)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 9% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052532.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Mar 1, 2022 this sequence version replaced XP_003640478.3. COMPLETENESS: full length., [RefSeq]; G-protein coupled receptor that plays a role in the regulation of circadian rhythms and energy metabolism. Participates in maintaining proper circadian gene expression in the suprachiasmatic nucleus (SCN), the locus of the master circadian clock in the brain. May function as a coordinator of aging-associated metabolic dysfunction, stress response, DNA integrity management, and eventual senescence. Upon binding to adropin, modulates mitochondrial energy metabolism via the p44/42-PDK4 signaling pathway, influencing pyruvate dehydrogenase activity., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0004930 G protein-coupled receptor activity", "go_cellular_component": "GO:0005886 plasma membrane;GO:0005929 cilium;GO:0043005 neuron projection", "go_biological_process": "GO:0007186 G protein-coupled receptor signaling pathway;GO:0032870 cellular response to hormone stimulus", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RL16-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RL63-1", "uniprot_id": [ { "id": "A0A1L1RL63_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RL63", "type": "external" } ], "mass": 24099.0, "length": 215, "protein_name": "Transmembrane protein 267", "gene_name": "TMEM267", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "TMEM267", "gene_names_refseq": "", "protein_names_uniprotkb": "Transmembrane protein 267", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "F1N9S9", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0016020 membrane", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RL63-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RLC7-1", "uniprot_id": [ { "id": "A0A1L1RLC7_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RLC7", "type": "external" } ], "mass": 24953.0, "length": 231, "protein_name": "Protein HTATIP2", "gene_name": "HTATIP2", "organism": "Chicken", "refseq_name": "oxidoreductase HTATIP2 isoform X2", "refseq_ac": [ { "id": "XP_422206", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_422206", "type": "external" } ], "gene_names_uniprotkb": "HTATIP2", "gene_names_refseq": "HTATIP2", "protein_names_uniprotkb": "Protein HTATIP2", "protein_names_refseq": "oxidoreductase HTATIP2 isoform X2", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052539.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0003824 catalytic activity", "go_cellular_component": "GO:0005737 cytoplasm", "go_biological_process": "GO:0001525 angiogenesis", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RLC7-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RLD5-1", "uniprot_id": [ { "id": "A0A1L1RLD5_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RLD5", "type": "external" } ], "mass": 33228.0, "length": 298, "protein_name": "Olfactory receptor", "gene_name": "", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "", "gene_names_refseq": "", "protein_names_uniprotkb": "Olfactory receptor", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "Odorant receptor., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0004930 G protein-coupled receptor activity;GO:0004984 olfactory receptor activity;GO:0005549 odorant binding", "go_cellular_component": "GO:0005886 plasma membrane", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RLD5-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RLE3-1", "uniprot_id": [ { "id": "A0A1L1RLE3_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RLE3", "type": "external" } ], "mass": 37318.0, "length": 324, "protein_name": "RNA ligase 1", "gene_name": "C12orf29", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "C12orf29", "gene_names_refseq": "", "protein_names_uniprotkb": "RNA ligase 1; 6.5.1.3; RNA ligase", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "Functions as an RNA ligase, in vitro. The ligation reaction entails three nucleotidyl transfer steps. In the first step, the RNA ligase reacts with ATP in the absence of nucleic acid to form a covalent ligase-AMP intermediate and release pyrophosphate. In step 2, the ligase-AMP binds to the nucleic acid and transfers the adenylate to the 5'-PO4 terminus to form an adenylylated intermediate. In step 3, the RNA ligase directs the attack of the 3'-OH on the 5'-phosphoanhydride linkage, resulting in a repaired 3'-5' phosphodiester and release of AMP. Exhibits selectivity for single-stranded RNA substrates and may not have nick-sealing activity on double-stranded DNA-RNA hybrids. May play a role in maintaining RNA integrity under stress conditions, for example in response to reactive oxygen species (ROS)., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0003972 RNA ligase (ATP) activity", "go_cellular_component": "", "go_biological_process": "GO:0000302 response to reactive oxygen species;GO:0042245 RNA repair;GO:0002244 hematopoietic progenitor cell differentiation", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RLE3-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RLK3-1", "uniprot_id": [ { "id": "A0A1L1RLK3_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RLK3", "type": "external" } ], "mass": 41909.0, "length": 382, "protein_name": "DNA repair protein", "gene_name": "XRCC3", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "XRCC3", "gene_names_refseq": "", "protein_names_uniprotkb": "DNA repair protein", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-5685942); (R-GGA-5693537); (R-GGA-5693568); (R-GGA-5693579)", "pathway_count": 4, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions., [UniProtKB, UniProtKB, UniProtKB, UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0003677 DNA binding;GO:0005524 ATP binding;GO:0140664 ATP-dependent DNA damage sensor activity;GO:0000400 four-way junction DNA binding;GO:0008821 crossover junction DNA endonuclease activity", "go_cellular_component": "GO:0005634 nucleus;GO:0005739 mitochondrion;GO:0048471 perinuclear region of cytoplasm;GO:0033065 Rad51C-XRCC3 complex;GO:0005654 nucleoplasm", "go_biological_process": "GO:0006281 DNA repair;GO:0006310 DNA recombination;GO:0010824 regulation of centrosome duplication;GO:0036297 interstrand cross-link repair;GO:0090656 t-circle formation", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RLK3-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RLN6-1", "uniprot_id": [ { "id": "A0A1L1RLN6_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RLN6", "type": "external" } ], "mass": 16838.0, "length": 150, "protein_name": "Myosin, light chain 6, alkali, smooth muscle and non-muscle", "gene_name": "MYL6", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "MYL6", "gene_names_refseq": "", "protein_names_uniprotkb": "Myosin, light chain 6, alkali, smooth muscle and non-muscle", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-445355); (R-GGA-5627123)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0005509 calcium ion binding;GO:0008307 structural constituent of muscle", "go_cellular_component": "GO:0016460 myosin II complex;GO:0016459 myosin complex", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RLN6-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RLR0-1", "uniprot_id": [ { "id": "A0A1L1RLR0_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RLR0", "type": "external" } ], "mass": 71445.0, "length": 647, "protein_name": "Transporter", "gene_name": "SLC6A8", "organism": "Chicken", "refseq_name": "sodium- and chloride-dependent creatine transporter 1", "refseq_ac": [ { "id": "XP_015148815", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_015148815", "type": "external" } ], "gene_names_uniprotkb": "SLC6A8", "gene_names_refseq": "SLC6A8", "protein_names_uniprotkb": "Transporter", "protein_names_refseq": "sodium- and chloride-dependent creatine transporter 1", "tax_id": 9031, "disease": "", "pathway": " (gga:100861584)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052543.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0046872 metal ion binding;GO:0015293 symporter activity;GO:0005332 gamma-aminobutyric acid:sodium:chloride symporter activity", "go_cellular_component": "GO:0016020 membrane;GO:0005886 plasma membrane", "go_biological_process": "GO:0006865 amino acid transport;GO:0035725 sodium ion transmembrane transport", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RLR0-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RLU3-1", "uniprot_id": [ { "id": "A0A1L1RLU3_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RLU3", "type": "external" } ], "mass": 18341.0, "length": 165, "protein_name": "Mitochondrial inner membrane protease subunit", "gene_name": "IMMP1L", "organism": "Chicken", "refseq_name": "mitochondrial inner membrane protease subunit 1 isoform X1", "refseq_ac": [ { "id": "XP_040557079", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_040557079", "type": "external" } ], "gene_names_uniprotkb": "IMMP1L", "gene_names_refseq": "IMMP1L", "protein_names_uniprotkb": "Mitochondrial inner membrane protease subunit; 3.4.21.-", "protein_names_refseq": "mitochondrial inner membrane protease subunit 1 isoform X1", "tax_id": 9031, "disease": "", "pathway": " (gga:771365)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052536.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0004252 serine-type endopeptidase activity", "go_cellular_component": "GO:0005743 mitochondrial inner membrane;GO:0042720 mitochondrial inner membrane peptidase complex", "go_biological_process": "GO:0006465 signal peptide processing;GO:0006627 protein processing involved in protein targeting to mitochondrion", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RLU3-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RLV0-1", "uniprot_id": [ { "id": "A0A1L1RLV0_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RLV0", "type": "external" } ], "mass": 15145.0, "length": 135, "protein_name": "Endosome-associated-trafficking regulator 1", "gene_name": "SDCCAG3", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "SDCCAG3", "gene_names_refseq": "", "protein_names_uniprotkb": "Endosome-associated-trafficking regulator 1", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RLV0-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RLV7-1", "uniprot_id": [ { "id": "A0A1L1RLV7_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RLV7", "type": "external" } ], "mass": 23711.0, "length": 206, "protein_name": "Mitotic spindle assembly checkpoint protein MAD2A", "gene_name": "MAD2L1", "organism": "Chicken", "refseq_name": "mitotic spindle assembly checkpoint protein MAD2A", "refseq_ac": [ { "id": "NP_001264678", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001264678", "type": "external" } ], "gene_names_uniprotkb": "MAD2L1", "gene_names_refseq": "MAD2L1", "protein_names_uniprotkb": "Mitotic spindle assembly checkpoint protein MAD2A; Mitotic arrest deficient 2-like protein 1", "protein_names_refseq": "MAD2 mitotic arrest deficient-like 1; MAD2-like 1; mitotic spindle assembly checkpoint protein MAD2A", "tax_id": 9031, "disease": "", "pathway": " (gga:422675); (R-GGA-141405); (R-GGA-141430); (R-GGA-141444); (R-GGA-174184); (R-GGA-176409); (R-GGA-179409); (R-GGA-2467813); (R-GGA-2500257); (R-GGA-5663220); (R-GGA-9648025)", "pathway_count": 11, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: HAEL01003956.1, BX935088.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JAENSK010000074.1. On or before Apr 18, 2013 this sequence version replaced XP_420629.1, XP_001233912.1., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "E1BUL1", "ec_number_list": [], "go_molecular_function": "GO:0042803 protein homodimerization activity", "go_cellular_component": "GO:0044615 nuclear pore nuclear basket;GO:0000922 spindle pole;GO:0005654 nucleoplasm;GO:0005829 cytosol;GO:0048471 perinuclear region of cytoplasm", "go_biological_process": "GO:0051301 cell division;GO:0007094 mitotic spindle assembly checkpoint signaling;GO:0042177 negative regulation of protein catabolic process;GO:0000132 establishment of mitotic spindle orientation;GO:0000070 mitotic sister chromatid segregation", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RLV7-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RM96-1", "uniprot_id": [ { "id": "A0A1L1RM96_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RM96", "type": "external" } ], "mass": 57122.0, "length": 516, "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "organism": "Chicken", "refseq_name": "pleiotropic regulator 1", "refseq_ac": [ { "id": "XP_420368", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_420368", "type": "external" } ], "gene_names_uniprotkb": "PLRG1", "gene_names_refseq": "PLRG1", "protein_names_uniprotkb": "Pleiotropic regulator 1", "protein_names_refseq": "pleiotropic regulator 1", "tax_id": 9031, "disease": "", "pathway": " (gga:422401); (R-GGA-72163)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052535.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Nov 16, 2006 this sequence version replaced XP_420368.1. COMPLETENESS: full length., [RefSeq]; Involved in pre-mRNA splicing as component of the spliceosome. Component of the PRP19-CDC5L complex that forms an integral part of the spliceosome and is required for activating pre-mRNA splicing. As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs., [UniProtKB, UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0016607 nuclear speck;GO:0031965 nuclear membrane;GO:0001650 fibrillar center;GO:0071013 catalytic step 2 spliceosome;GO:0005662 DNA replication factor A complex", "go_biological_process": "GO:0034504 protein localization to nucleus;GO:1900087 positive regulation of G1/S transition of mitotic cell cycle;GO:0000398 mRNA splicing, via spliceosome", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RM96-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RME9-1", "uniprot_id": [ { "id": "A0A1L1RME9_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RME9", "type": "external" } ], "mass": 68490.0, "length": 609, "protein_name": "Nuclear protein localization protein 4 homolog", "gene_name": "NPLOC4", "organism": "Chicken", "refseq_name": "nuclear protein localization protein 4 homolog", "refseq_ac": [ { "id": "XP_415704", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_415704", "type": "external" } ], "gene_names_uniprotkb": "NPLOC4", "gene_names_refseq": "NPLOC4", "protein_names_uniprotkb": "Nuclear protein localization protein 4 homolog", "protein_names_refseq": "nuclear protein localization protein 4 homolog", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-110320); (R-GGA-8951664); (R-GGA-9755511)", "pathway_count": 3, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052549.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 16, 2011 this sequence version replaced XP_415704.2. COMPLETENESS: full length., [RefSeq]; The ternary complex containing UFD1, VCP and NPLOC4 binds ubiquitinated proteins and is necessary for the export of misfolded proteins from the ER to the cytoplasm, where they are degraded by the proteasome. The NPLOC4-UFD1-VCP complex regulates spindle disassembly at the end of mitosis and is necessary for the formation of a closed nuclear envelope. Acts as a negative regulator of type I interferon production via the complex formed with VCP and UFD1, which binds to RIGI and recruits RNF125 to promote ubiquitination and degradation of RIGI., [UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0008270 zinc ion binding;GO:0031625 ubiquitin protein ligase binding;GO:0043130 ubiquitin binding", "go_cellular_component": "GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex;GO:0005634 nucleus;GO:0005829 cytosol;GO:0036501 UFD1-NPL4 complex", "go_biological_process": "GO:0006511 ubiquitin-dependent protein catabolic process;GO:0030970 retrograde protein transport, ER to cytosol;GO:0039536 negative regulation of RIG-I signaling pathway;GO:0032480 negative regulation of type I interferon production", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RME9-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RMG2-1", "uniprot_id": [ { "id": "A0A1L1RMG2_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RMG2", "type": "external" } ], "mass": 19173.0, "length": 168, "protein_name": "WW domain binding protein VOPP1", "gene_name": "VOPP1", "organism": "Chicken", "refseq_name": "vesicular, overexpressed in cancer, prosurvival protein 1 isoform X1", "refseq_ac": [ { "id": "XP_004939662", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_004939662", "type": "external" } ], "gene_names_uniprotkb": "VOPP1", "gene_names_refseq": "VOPP1", "protein_names_uniprotkb": "WW domain binding protein VOPP1; Vesicular, overexpressed in cancer, prosurvival protein 1", "protein_names_refseq": "vesicular, overexpressed in cancer, prosurvival protein 1 isoform X1", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052533.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0019899 enzyme binding", "go_cellular_component": "GO:0005765 lysosomal membrane;GO:0031902 late endosome membrane;GO:0031090 organelle membrane", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RMG2-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RMQ9-1", "uniprot_id": [ { "id": "A0A1L1RMQ9_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RMQ9", "type": "external" } ], "mass": 35049.0, "length": 312, "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC107053361", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "LOC107053361", "gene_names_refseq": "", "protein_names_uniprotkb": "G-protein coupled receptors family 1 profile domain-containing protein", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "Odorant receptor., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0004930 G protein-coupled receptor activity;GO:0004984 olfactory receptor activity;GO:0005549 odorant binding", "go_cellular_component": "GO:0005886 plasma membrane", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RMQ9-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RMS8-1", "uniprot_id": [ { "id": "A0A1L1RMS8_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RMS8", "type": "external" } ], "mass": 12056.0, "length": 110, "protein_name": "ER membrane protein complex subunit 6", "gene_name": "EMC6", "organism": "Chicken", "refseq_name": "ER membrane protein complex subunit 6", "refseq_ac": [ { "id": "XP_001234671", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001234671", "type": "external" } ], "gene_names_uniprotkb": "EMC6", "gene_names_refseq": "EMC6", "protein_names_uniprotkb": "ER membrane protein complex subunit 6; Transmembrane protein 93", "protein_names_refseq": "ER membrane protein complex subunit 6", "tax_id": 9031, "disease": "", "pathway": " (gga:417604)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052550.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "R4GKV5", "ec_number_list": [], "go_molecular_function": "GO:0032977 membrane insertase activity", "go_cellular_component": "GO:0072546 EMC complex;GO:1903349 omegasome membrane", "go_biological_process": "GO:0000045 autophagosome assembly;GO:0071816 tail-anchored membrane protein insertion into ER membrane;GO:0045050 protein insertion into ER membrane by stop-transfer membrane-anchor sequence", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RMS8-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RN40-1", "uniprot_id": [ { "id": "A0A1L1RN40_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RN40", "type": "external" } ], "mass": 45923.0, "length": 404, "protein_name": "Kelch domain-containing protein 1", "gene_name": "KLHDC1", "organism": "Chicken", "refseq_name": "kelch domain-containing protein 1 isoform X2", "refseq_ac": [ { "id": "XP_421458", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_421458", "type": "external" } ], "gene_names_uniprotkb": "KLHDC1", "gene_names_refseq": "KLHDC1", "protein_names_uniprotkb": "Kelch domain-containing protein 1", "protein_names_refseq": "kelch domain-containing protein 1 isoform X2", "tax_id": 9031, "disease": "", "pathway": " (gga:423568)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052536.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]; Substrate-recognition component of a Cul5-RING (CRL5) E3 ubiquitin-protein ligase complex of the DesCEND (destruction via C-end degrons) pathway, which recognizes a C-degron located at the extreme C terminus of target proteins, leading to their ubiquitination and degradation. The C-degron recognized by the DesCEND pathway is usually a motif of less than ten residues and can be present in full-length proteins, truncated proteins or proteolytically cleaved forms. The CRL5(KLHDC1) complex mediates ubiquitination and degradation of truncated SELENOS selenoprotein produced by failed UGA/Sec decoding, which ends with a glycine., [UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:1990756 ubiquitin-like ligase-substrate adaptor activity", "go_cellular_component": "GO:0005829 cytosol;GO:0031466 Cul5-RING ubiquitin ligase complex;GO:0000151 ubiquitin ligase complex", "go_biological_process": "GO:0140627 ubiquitin-dependent protein catabolic process via the C-end degron rule pathway", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RN40-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RNI5-1", "uniprot_id": [ { "id": "A0A1L1RNI5_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RNI5", "type": "external" } ], "mass": 63453.0, "length": 558, "protein_name": "Atlastin-1", "gene_name": "ATL1", "organism": "Chicken", "refseq_name": "atlastin-1 isoform X1", "refseq_ac": [ { "id": "XP_015132234", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_015132234", "type": "external" } ], "gene_names_uniprotkb": "ATL1", "gene_names_refseq": "ATL1", "protein_names_uniprotkb": "Atlastin-1", "protein_names_refseq": "atlastin-1 isoform X1", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052536.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]; Atlastin-1 (ATL1) is a membrane-anchored GTPase that mediates the GTP-dependent fusion of endoplasmic reticulum (ER) membranes, maintaining the continuous ER network. It facilitates the formation of three-way junctions where ER tubules intersect. Two atlastin-1 on neighboring ER tubules bind GTP and form loose homodimers through the GB1/RHD3-type G domains and 3HB regions. Upon GTP hydrolysis, the 3HB regions tighten, pulling the membranes together to drive their fusion. After fusion, the homodimer disassembles upon release of inorganic phosphate (Pi). Subsequently, GDP dissociates, resetting the monomers to a conformation ready for a new fusion cycle. May also regulate more or less directly Golgi biogenesis. Indirectly regulates axonal development., [UniProtKB, UniProtKB, UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [ { "id": "3.6.5.2", "url": "https://www.rhea-db.org/rhea/?query=ec:3.6.5.2", "type": "external" }, { "id": "3.6.5.5", "url": "https://www.rhea-db.org/rhea/?query=ec:3.6.5.5", "type": "external" }, { "id": "3.6.5.3", "url": "https://www.rhea-db.org/rhea/?query=ec:3.6.5.3", "type": "external" }, { "id": "3.6.5.-", "url": "https://www.rhea-db.org/rhea/?query=ec:3.6.5.-", "type": "external" }, { "id": "3.6.1.5", "url": "https://www.rhea-db.org/rhea/?query=ec:3.6.1.5", "type": "external" } ], "go_molecular_function": "GO:0003924 GTPase activity;GO:0005525 GTP binding;GO:0042802 identical protein binding;GO:0140523 GTPase-dependent fusogenic activity", "go_cellular_component": "GO:0000139 Golgi membrane;GO:0030424 axon;GO:0005789 endoplasmic reticulum membrane;GO:0098826 endoplasmic reticulum tubular network membrane", "go_biological_process": "GO:0051260 protein homooligomerization;GO:1990809 endoplasmic reticulum tubular network membrane organization;GO:0007029 endoplasmic reticulum organization;GO:0016320 endoplasmic reticulum membrane fusion", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RNI5-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RNL0-1", "uniprot_id": [ { "id": "A0A1L1RNL0_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RNL0", "type": "external" } ], "mass": 50582.0, "length": 450, "protein_name": "Coiled-coil domain containing 27", "gene_name": "CCDC27", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "CCDC27", "gene_names_refseq": "", "protein_names_uniprotkb": "Coiled-coil domain containing 27", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RNL0-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RNT7-1", "uniprot_id": [ { "id": "A0A1L1RNT7_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RNT7", "type": "external" } ], "mass": 7862.0, "length": 77, "protein_name": "Calcium/calmodulin dependent protein kinase II inhibitor 1", "gene_name": "CAMK2N1", "organism": "Chicken", "refseq_name": "calcium/calmodulin-dependent protein kinase II inhibitor 1", "refseq_ac": [ { "id": "XP_003642579", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003642579", "type": "external" } ], "gene_names_uniprotkb": "CAMK2N1", "gene_names_refseq": "CAMK2N1", "protein_names_uniprotkb": "Calcium/calmodulin dependent protein kinase II inhibitor 1", "protein_names_refseq": "calcium/calmodulin-dependent protein kinase II inhibitor 1", "tax_id": 9031, "disease": "", "pathway": " (gga:100858651)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052552.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 10, 2021 this sequence version replaced XP_003642579.3. COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0019901 protein kinase binding;GO:0008427 calcium-dependent protein kinase inhibitor activity", "go_cellular_component": "GO:0014069 postsynaptic density", "go_biological_process": "GO:0050729 positive regulation of inflammatory response;GO:0007616 long-term memory", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RNT7-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RNY8-1", "uniprot_id": [ { "id": "A0A1L1RNY8_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RNY8", "type": "external" } ], "mass": 15045.0, "length": 143, "protein_name": "Histone H2A", "gene_name": "H2AX", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "H2AX", "gene_names_refseq": "", "protein_names_uniprotkb": "Histone H2A", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-212300); (R-GGA-2299718); (R-GGA-2559580); (R-GGA-427413); (R-GGA-5250924); (R-GGA-5693565); (R-GGA-5693571); (R-GGA-5693607); (R-GGA-606279); (R-GGA-68616); (R-GGA-69473); (R-GGA-73728); (R-GGA-73772); (R-GGA-8936459); (R-GGA-9018519); (R-GGA-9764725); (R-GGA-9841922); (R-GGA-9843940); (R-GGA-9843970); (R-GGA-9909649)", "pathway_count": 20, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0019899 enzyme binding;GO:0046982 protein heterodimerization activity;GO:0003684 damaged DNA binding;GO:0042393 histone binding;GO:0030527 structural constituent of chromatin", "go_cellular_component": "GO:0000794 condensed nuclear chromosome;GO:0005634 nucleus;GO:0005813 centrosome;GO:0016607 nuclear speck;GO:0001673 male germ cell nucleus", "go_biological_process": "GO:1990166 protein localization to site of double-strand break;GO:0007283 spermatogenesis;GO:0000724 double-strand break repair via homologous recombination;GO:0000077 DNA damage checkpoint signaling;GO:0031507 heterochromatin formation", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RNY8-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RNZ2-1", "uniprot_id": [ { "id": "A0A1L1RNZ2_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RNZ2", "type": "external" } ], "mass": 8407.0, "length": 71, "protein_name": "60S ribosomal protein L29", "gene_name": "RPL29", "organism": "Chicken", "refseq_name": "large ribosomal subunit protein eL29", "refseq_ac": [ { "id": "NP_001165148", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001165148", "type": "external" } ], "gene_names_uniprotkb": "RPL29", "gene_names_refseq": "RPL29", "protein_names_uniprotkb": "60S ribosomal protein L29", "protein_names_refseq": "large ribosomal subunit protein eL29", "tax_id": 9031, "disease": "", "pathway": " (gga:770249); (R-GGA-1799339); (R-GGA-72706); (R-GGA-975956); (R-GGA-975957); (R-GGA-9954709); (R-GGA-9954714); (R-GGA-9954716)", "pathway_count": 8, "publication_count": 1, "publication_id_list": "38395592", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: CF250886.1, BU329143.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CF250307.1, BX930732.2, BU373879.1, BU311922.1 and AJ443903.1. On Jan 27, 2010 this sequence version replaced XP_001233581.1., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0003735 structural constituent of ribosome", "go_cellular_component": "GO:0022625 cytosolic large ribosomal subunit", "go_biological_process": "GO:0002181 cytoplasmic translation", "synthesized_glycan_count": 0, "hit_score": 0.2, "record_id": "A0A1L1RNZ2-1", "record_type": "protein", "filter_code": "0000000.0000101.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RP46-1", "uniprot_id": [ { "id": "A0A1L1RP46_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RP46", "type": "external" } ], "mass": 22708.0, "length": 205, "protein_name": "RAB1B, member RAS onco family", "gene_name": "RAB1B", "organism": "Chicken", "refseq_name": "ras-related protein Rab-1A", "refseq_ac": [ { "id": "NP_001257591", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001257591", "type": "external" } ], "gene_names_uniprotkb": "RAB1B", "gene_names_refseq": "RAB1A; RAB1B", "protein_names_uniprotkb": "RAB1B, member RAS onco family", "protein_names_refseq": "GTP binding protein Rab1a; RAB1A, member RAS oncogene family; ras-related protein Rab-1A", "tax_id": 9031, "disease": "", "pathway": " (gga:421273)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: HAEL01004128.1, HAEK01024030.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992432 [ECO:0000348] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000061.1. On Jul 26, 2012 this sequence version replaced XP_419342.2. Sequence Note: This RefSeq record was created from transcript and genomic sequence data from different strains because no single transcript from the same strain was available for the full length of the gene.The extent of this transcript is supported by transcript alignments and orthologous data., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0003924 GTPase activity;GO:0005525 GTP binding", "go_cellular_component": "GO:0005783 endoplasmic reticulum;GO:0005794 Golgi apparatus;GO:0042470 melanosome;GO:0005811 lipid droplet", "go_biological_process": "GO:0090110 COPII-coated vesicle cargo loading;GO:1903020 positive regulation of glycoprotein metabolic process;GO:0000045 autophagosome assembly;GO:0006897 endocytosis;GO:0015031 protein transport", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RP46-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RP66-1", "uniprot_id": [ { "id": "A0A1L1RP66_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RP66", "type": "external" } ], "mass": 45798.0, "length": 403, "protein_name": "26S proteasome regulatory subunit 10B", "gene_name": "PSMC6", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "PSMC6", "gene_names_refseq": "", "protein_names_uniprotkb": "26S proteasome regulatory subunit 10B; 26S proteasome AAA-ATPase subunit RPT4; Proteasome 26S subunit ATPase 6", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-1169091); (R-GGA-1234176); (R-GGA-1236978); (R-GGA-174084); (R-GGA-174154); (R-GGA-174178); (R-GGA-174184); (R-GGA-187577); (R-GGA-195253); (R-GGA-202424); (R-GGA-2467813); (R-GGA-2871837); (R-GGA-349425); (R-GGA-350562); (R-GGA-382556); (R-GGA-450408); (R-GGA-4608870); (R-GGA-4641257); (R-GGA-4641258); (R-GGA-5358346); (R-GGA-5607764); (R-GGA-5610780); (R-GGA-5610785); (R-GGA-5632684); (R-GGA-5658442); (R-GGA-5668541); (R-GGA-5687128); (R-GGA-5689603); (R-GGA-5689880); (R-GGA-68867); (R-GGA-68949); (R-GGA-69017); (R-GGA-69601); (R-GGA-75815); (R-GGA-8854050); (R-GGA-8939236); (R-GGA-8939902); (R-GGA-8941858); (R-GGA-8948751); (R-GGA-8951664); (R-GGA-9020702); (R-GGA-9755511); (R-GGA-9762114); (R-GGA-9766229); (R-GGA-983168); (R-GGA-9907900); (R-GGA-9929356); (R-GGA-9929491); (R-GGA-9931269); (R-GGA-9932298); (R-GGA-9954709)", "pathway_count": 51, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0005524 ATP binding;GO:0042802 identical protein binding;GO:0016887 ATP hydrolysis activity;GO:0036402 proteasome-activating activity", "go_cellular_component": "GO:0008540 proteasome regulatory particle, base subcomplex;GO:0005634 nucleus;GO:0005737 cytoplasm;GO:0000502 proteasome complex", "go_biological_process": "GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process;GO:0036503 ERAD pathway;GO:0045899 positive regulation of RNA polymerase II transcription preinitiation complex assembly", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RP66-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RP76-1", "uniprot_id": [ { "id": "A0A1L1RP76_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RP76", "type": "external" } ], "mass": 69248.0, "length": 644, "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "SH3RF2", "organism": "Chicken", "refseq_name": "E3 ubiquitin-protein ligase SH3RF2 isoform X1", "refseq_ac": [ { "id": "XP_004945098", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_004945098", "type": "external" } ], "gene_names_uniprotkb": "SH3RF2", "gene_names_refseq": "SH3RF2", "protein_names_uniprotkb": "RING-type E3 ubiquitin transferase; 2.3.2.27", "protein_names_refseq": "E3 ubiquitin-protein ligase SH3RF2 isoform X1", "tax_id": 9031, "disease": "", "pathway": " (gga:416346)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052544.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0008270 zinc ion binding;GO:0061630 ubiquitin protein ligase activity;GO:0008157 protein phosphatase 1 binding", "go_cellular_component": "GO:0005654 nucleoplasm", "go_biological_process": "GO:0030335 positive regulation of cell migration;GO:0043066 negative regulation of apoptotic process;GO:0046330 positive regulation of JNK cascade;GO:0016567 protein ubiquitination;GO:0031397 negative regulation of protein ubiquitination", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RP76-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RPC1-1", "uniprot_id": [ { "id": "A0A1L1RPC1_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RPC1", "type": "external" } ], "mass": 86863.0, "length": 760, "protein_name": "Nuclear GTPase, germinal center associated", "gene_name": "NUGGC", "organism": "Chicken", "refseq_name": "nuclear GTPase SLIP-GC", "refseq_ac": [ { "id": "XP_004935904", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_004935904", "type": "external" } ], "gene_names_uniprotkb": "NUGGC", "gene_names_refseq": "NUGGC", "protein_names_uniprotkb": "Nuclear GTPase, germinal center associated", "protein_names_refseq": "nuclear GTPase SLIP-GC", "tax_id": 9031, "disease": "", "pathway": " (gga:422002)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052534.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0003924 GTPase activity", "go_cellular_component": "", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RPC1-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RPT1-1", "uniprot_id": [ { "id": "A0A1L1RPT1_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RPT1", "type": "external" } ], "mass": 56410.0, "length": 491, "protein_name": "[histone H3]-lysine(4) N-trimethyltransferase", "gene_name": "SMYD1", "organism": "Chicken", "refseq_name": "histone-lysine N-methyltransferase SMYD1 isoform 1", "refseq_ac": [ { "id": "NP_989486", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_989486", "type": "external" } ], "gene_names_uniprotkb": "SMYD1", "gene_names_refseq": "BOP; SMYD1", "protein_names_uniprotkb": "[histone H3]-lysine(4) N-trimethyltransferase; 2.1.1.354; SET and MYND domain-containing protein 1", "protein_names_refseq": "CD8 beta opposite; SET and MYND domain-containing protein 1; histone-lysine N-methyltransferase SMYD1 isoform 1", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: HAEL01002244.1, HAEL01005269.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000077.1. On Nov 16, 2021 this sequence version replaced NP_989486.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [ { "id": "2.1.1.354", "url": "https://www.rhea-db.org/rhea/?query=ec:2.1.1.354", "type": "external" }, { "id": "2.1.1.-", "url": "https://www.rhea-db.org/rhea/?query=ec:2.1.1.-", "type": "external" } ], "go_molecular_function": "GO:0003677 DNA binding;GO:0008270 zinc ion binding;GO:0003714 transcription corepressor activity;GO:0042800 histone H3K4 methyltransferase activity", "go_cellular_component": "GO:0005634 nucleus;GO:0005737 cytoplasm", "go_biological_process": "GO:0010831 positive regulation of myotube differentiation;GO:0007507 heart development;GO:0035914 skeletal muscle cell differentiation;GO:0032259 methylation;GO:0045663 positive regulation of myoblast differentiation", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RPT1-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RPU6-1", "uniprot_id": [ { "id": "A0A1L1RPU6_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RPU6", "type": "external" } ], "mass": 33410.0, "length": 302, "protein_name": "Transmembrane protein 53", "gene_name": "TMEM53", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "TMEM53", "gene_names_refseq": "", "protein_names_uniprotkb": "Transmembrane protein 53", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0005640 nuclear outer membrane", "go_biological_process": "GO:0046822 regulation of nucleocytoplasmic transport;GO:0030514 negative regulation of BMP signaling pathway;GO:0045668 negative regulation of osteoblast differentiation;GO:0030279 negative regulation of ossification", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RPU6-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RPW4-1", "uniprot_id": [ { "id": "A0A1L1RPW4_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RPW4", "type": "external" } ], "mass": 340451.0, "length": 3122, "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "organism": "Chicken", "refseq_name": "collagen alpha-1(XII) chain precursor", "refseq_ac": [ { "id": "NP_990352", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_990352", "type": "external" } ], "gene_names_uniprotkb": "COL12A1", "gene_names_refseq": "COL12A1", "protein_names_uniprotkb": "Collagen alpha-1(XII) chain", "protein_names_refseq": "collagen XII; collagen alpha-1(XII) chain precursor; collagen alpha-1(XII) chain; collagen, type XII, alpha 1; fibrochimerin; type XII collagen", "tax_id": 9031, "disease": "", "pathway": " (gga:395875); (R-GGA-1442490); (R-GGA-1650814); (R-GGA-8948216)", "pathway_count": 4, "publication_count": 1, "publication_id_list": "16861231", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: X61024.1, D00824.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000065.1. On Mar 4, 2015 this sequence version replaced NP_990352.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments., [RefSeq]; Collagen XII interacts with avian tenascin-X through its NC3 domain, [RefSeq, PubMed]; Type XII collagen interacts with type I collagen-containing fibrils, the COL1 domain could be associated with the surface of the fibrils, and the COL2 and NC3 domains may be localized in the perifibrillar matrix., [UniProtKB, UniProtKB, UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 5, "predicted_n_glycosites": 0, "predicted_o_glycosites": 5, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 5, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0005576 extracellular region;GO:0005581 collagen trimer", "go_biological_process": "GO:0007155 cell adhesion;GO:0009888 tissue development;GO:0035987 endodermal cell differentiation", "synthesized_glycan_count": 0, "hit_score": 0.2, "record_id": "A0A1L1RPW4-1", "record_type": "protein", "filter_code": "0000000.0000101.001000.0001000000000000.0000000001000.001.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RPY6-1", "uniprot_id": [ { "id": "A0A1L1RPY6_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RPY6", "type": "external" } ], "mass": 52149.0, "length": 445, "protein_name": "Eukaryotic translation initiation factor 3 subunit E", "gene_name": "EIF3E", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "EIF3E; EIF3S6", "gene_names_refseq": "", "protein_names_uniprotkb": "Eukaryotic translation initiation factor 3 subunit E; Eukaryotic translation initiation factor 3 subunit 6; eIF3e", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-72649); (R-GGA-72695); (R-GGA-72702)", "pathway_count": 3, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation., [UniProtKB, HAMAP, UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0003743 translation initiation factor activity", "go_cellular_component": "GO:0005634 nucleus;GO:0005829 cytosol;GO:0014069 postsynaptic density;GO:0016605 PML body;GO:0016282 eukaryotic 43S preinitiation complex", "go_biological_process": "GO:0006413 translational initiation;GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay;GO:0045727 positive regulation of translation;GO:0001732 formation of cytoplasmic translation initiation complex", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RPY6-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RPZ3-1", "uniprot_id": [ { "id": "A0A1L1RPZ3_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RPZ3", "type": "external" } ], "mass": 22433.0, "length": 196, "protein_name": "5'-deoxynucleotidase HDDC2", "gene_name": "HDDC2", "organism": "Chicken", "refseq_name": "5'-deoxynucleotidase HDDC2", "refseq_ac": [ { "id": "NP_001264847", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001264847", "type": "external" } ], "gene_names_uniprotkb": "HDDC2", "gene_names_refseq": "HDDC2", "protein_names_uniprotkb": "5'-deoxynucleotidase HDDC2; 3.1.3.89; HD domain-containing protein 2", "protein_names_refseq": "5'-deoxynucleotidase HDDC2", "tax_id": 9031, "disease": "", "pathway": " (gga:421719)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: BU388637.1, BU348699.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000063.1. On Apr 28, 2013 this sequence version replaced XP_419755.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data from different strains because no single transcript from the same strain was available for the full length of the gene. The extent of this transcript is supported by transcript alignments and orthologous data., [RefSeq]; Catalyzes the dephosphorylation of the nucleoside 5'-monophosphates deoxyadenosine monophosphate (dAMP), deoxycytidine monophosphate (dCMP), deoxyguanosine monophosphate (dGMP) and deoxythymidine monophosphate (dTMP)., [UniProtKB, UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [ { "id": "3.1.3.89", "url": "https://www.rhea-db.org/rhea/?query=ec:3.1.3.89", "type": "external" } ], "go_molecular_function": "GO:0046872 metal ion binding;GO:0002953 5'-deoxynucleotidase activity", "go_cellular_component": "", "go_biological_process": "GO:0009159 deoxyribonucleoside monophosphate catabolic process", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RPZ3-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RQ52-1", "uniprot_id": [ { "id": "A0A1L1RQ52_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RQ52", "type": "external" } ], "mass": 44956.0, "length": 394, "protein_name": "Lipase", "gene_name": "LOC770890", "organism": "Chicken", "refseq_name": "lipase member M-like", "refseq_ac": [ { "id": "XP_001234209", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001234209", "type": "external" } ], "gene_names_uniprotkb": "LOC770890", "gene_names_refseq": "LOC770890", "protein_names_uniprotkb": "Lipase", "protein_names_refseq": "lipase member M-like", "tax_id": 9031, "disease": "", "pathway": " (gga:770890); (R-GGA-192456); (R-GGA-6809371)", "pathway_count": 3, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052537.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0016298 lipase activity", "go_cellular_component": "", "go_biological_process": "GO:0006629 lipid metabolic process;GO:0016042 lipid catabolic process", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RQ52-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RQ85-1", "uniprot_id": [ { "id": "A0A1L1RQ85_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RQ85", "type": "external" } ], "mass": 37838.0, "length": 344, "protein_name": "Lysosome-associated membrane glycoprotein 5", "gene_name": "LAMP5", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "LAMP5", "gene_names_refseq": "", "protein_names_uniprotkb": "Lysosome-associated membrane glycoprotein 5; Lysosome-associated membrane protein 5", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (gga:416732)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "Plays a role in short-term synaptic plasticity in a subset of GABAergic neurons in the brain., [UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0032584 growth cone membrane;GO:0030425 dendrite;GO:0055037 recycling endosome;GO:0031901 early endosome membrane;GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane", "go_biological_process": "GO:0072594 establishment of protein localization to organelle;GO:0099171 presynaptic modulation of chemical synaptic transmission", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RQ85-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RQ93-1", "uniprot_id": [ { "id": "A0A1L1RQ93_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RQ93", "type": "external" } ], "mass": 68154.0, "length": 605, "protein_name": "Leucine rich repeat and Ig domain containing 3", "gene_name": "LINGO3", "organism": "Chicken", "refseq_name": "leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3", "refseq_ac": [ { "id": "XP_015155348", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_015155348", "type": "external" } ], "gene_names_uniprotkb": "LINGO3", "gene_names_refseq": "LINGO3", "protein_names_uniprotkb": "Leucine rich repeat and Ig domain containing 3", "protein_names_refseq": "leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3", "tax_id": 9031, "disease": "", "pathway": " (gga:420075)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052559.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0038023 signaling receptor activity", "go_cellular_component": "GO:0005886 plasma membrane", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RQ93-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RQ94-1", "uniprot_id": [ { "id": "A0A1L1RQ94_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RQ94", "type": "external" } ], "mass": 7587.0, "length": 69, "protein_name": "Uncharacterized protein", "gene_name": "", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "", "gene_names_refseq": "", "protein_names_uniprotkb": "Uncharacterized protein", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-5628897); (R-GGA-611105); (R-GGA-9707564)", "pathway_count": 3, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0005739 mitochondrion;GO:0005743 mitochondrial inner membrane;GO:0045277 respiratory chain complex IV", "go_biological_process": "GO:0006123 mitochondrial electron transport, cytochrome c to oxygen", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RQ94-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RQA3-1", "uniprot_id": [ { "id": "A0A1L1RQA3_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RQA3", "type": "external" } ], "mass": 72723.0, "length": 651, "protein_name": "Solute carrier family 24 member 2", "gene_name": "SLC24A2", "organism": "Chicken", "refseq_name": "sodium/potassium/calcium exchanger 2 isoform 2", "refseq_ac": [ { "id": "NP_001384040", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001384040", "type": "external" } ], "gene_names_uniprotkb": "SLC24A2", "gene_names_refseq": "NCKX; SLC24A2", "protein_names_uniprotkb": "Solute carrier family 24 member 2", "protein_names_refseq": "Na(+)/K(+)/Ca(2+)-exchange protein 2; cone potassium-dependent, sodium-calcium exchanger; retinal cone Na-Ca+K exchanger; sodium/potassium/calcium exchanger 2 isoform 2; sodium/potassium/calcium exchanger 2; solute carrier family 24 (sodium/potassium/calcium exchanger), member 2", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-425561)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: SRR12888497.287783.1, SRR12888496.196462.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992533 [ECO:0000348] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000093.1. On Nov 3, 2021 this sequence version replaced XP_015135569.1., [RefSeq]", "predicted_glycosites": 1, "predicted_n_glycosites": 0, "predicted_o_glycosites": 1, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 1, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0005262 calcium channel activity;GO:0015293 symporter activity;GO:0008273 calcium, potassium:sodium antiporter activity", "go_cellular_component": "GO:0005886 plasma membrane;GO:0098794 postsynapse;GO:0098793 presynapse", "go_biological_process": "GO:0007612 learning;GO:0007613 memory;GO:0070050 neuron cellular homeostasis;GO:0006874 intracellular calcium ion homeostasis;GO:0060292 long-term synaptic depression", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RQA3-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000001000.001.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RQE4-1", "uniprot_id": [ { "id": "A0A1L1RQE4_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RQE4", "type": "external" } ], "mass": 21184.0, "length": 181, "protein_name": "Regulator of G protein signaling 10", "gene_name": "RGS10", "organism": "Chicken", "refseq_name": "regulator of G-protein signaling 10 isoform X1", "refseq_ac": [ { "id": "XP_015144396", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_015144396", "type": "external" } ], "gene_names_uniprotkb": "RGS10", "gene_names_refseq": "RGS10", "protein_names_uniprotkb": "Regulator of G protein signaling 10", "protein_names_refseq": "regulator of G-protein signaling 10 isoform X1", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052537.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0005096 GTPase activator activity;GO:0001965 G-protein alpha-subunit binding", "go_cellular_component": "GO:0005829 cytosol;GO:0045202 synapse;GO:0016604 nuclear body", "go_biological_process": "GO:0008277 regulation of G protein-coupled receptor signaling pathway;GO:0007213 G protein-coupled acetylcholine receptor signaling pathway", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RQE4-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RQM2-1", "uniprot_id": [ { "id": "A0A1L1RQM2_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RQM2", "type": "external" } ], "mass": 33897.0, "length": 308, "protein_name": "Enolase-phosphatase E1", "gene_name": "ENOPH1", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "ENOPH1; MASA", "gene_names_refseq": "", "protein_names_uniprotkb": "Enolase-phosphatase E1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; 3.1.3.77; MASA homolog", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-1237112)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene)., [UniProtKB, HAMAP, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [ { "id": "3.1.3.77", "url": "https://www.rhea-db.org/rhea/?query=ec:3.1.3.77", "type": "external" } ], "go_molecular_function": "GO:0000287 magnesium ion binding;GO:0043874 acireductone synthase activity", "go_cellular_component": "GO:0005634 nucleus;GO:0005737 cytoplasm", "go_biological_process": "GO:0019509 L-methionine salvage from methylthioadenosine", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RQM2-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RQR8-1", "uniprot_id": [ { "id": "A0A1L1RQR8_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RQR8", "type": "external" } ], "mass": 12467.0, "length": 105, "protein_name": "Synaptic plasticity regulator PANTS", "gene_name": "C22orf39", "organism": "Chicken", "refseq_name": "UPF0545 protein C22orf39 homolog", "refseq_ac": [ { "id": "XP_015131179", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_015131179", "type": "external" } ], "gene_names_uniprotkb": "C22orf39", "gene_names_refseq": "C22orf39", "protein_names_uniprotkb": "Synaptic plasticity regulator PANTS; Plasticity-associated neural transcript short", "protein_names_refseq": "UPF0545 protein C22orf39 homolog", "tax_id": 9031, "disease": "", "pathway": " (gga:101751757)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052546.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0045202 synapse;GO:0043083 synaptic cleft", "go_biological_process": "GO:1900272 negative regulation of long-term synaptic potentiation", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RQR8-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RQU5-1", "uniprot_id": [ { "id": "A0A1L1RQU5_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RQU5", "type": "external" } ], "mass": 34512.0, "length": 308, "protein_name": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1", "gene_name": "CD38", "organism": "Chicken", "refseq_name": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1", "refseq_ac": [ { "id": "NP_001188317", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001188317", "type": "external" } ], "gene_names_uniprotkb": "CD38", "gene_names_refseq": "CD38", "protein_names_uniprotkb": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1; 2'-phospho-ADP-ribosyl cyclase/2'-phospho-cyclic-ADP-ribose transferase; 2'-phospho-ADP-ribosyl cyclase; 2'-phospho-cyclic-ADP-ribose transferase; 2.4.99.20; 3.2.2.6; ADP-ribosyl cyclase 1; Cyclic ADP-ribose hydrolase 1", "protein_names_refseq": "ADP-ribosyl cyclase 1; ADP-ribosyl cyclase CD38; ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-196807)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: SRR13267660.19851.1, SRR12888496.233623.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JAENSK010000074.1. On Sep 23, 2021 this sequence version replaced NP_001188317.1., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [ { "id": "2.4.99.20", "url": "https://www.rhea-db.org/rhea/?query=ec:2.4.99.20", "type": "external" }, { "id": "3.2.2.6", "url": "https://www.rhea-db.org/rhea/?query=ec:3.2.2.6", "type": "external" } ], "go_molecular_function": "GO:0042802 identical protein binding;GO:0016740 transferase activity;GO:0016849 phosphorus-oxygen lyase activity;GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating", "go_cellular_component": "GO:0005886 plasma membrane;GO:0009986 cell surface", "go_biological_process": "GO:0043066 negative regulation of apoptotic process;GO:0045892 negative regulation of DNA-templated transcription;GO:0030890 positive regulation of B cell proliferation;GO:0045893 positive regulation of DNA-templated transcription;GO:0050853 B cell receptor signaling pathway", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RQU5-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RQX0-1", "uniprot_id": [ { "id": "A0A1L1RQX0_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RQX0", "type": "external" } ], "mass": 42279.0, "length": 366, "protein_name": "Coiled-coil domain containing 89", "gene_name": "CCDC89", "organism": "Chicken", "refseq_name": "coiled-coil domain-containing protein 89", "refseq_ac": [ { "id": "XP_424044", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_424044", "type": "external" } ], "gene_names_uniprotkb": "CCDC89", "gene_names_refseq": "CCDC89", "protein_names_uniprotkb": "Coiled-coil domain containing 89", "protein_names_refseq": "coiled-coil domain-containing protein 89", "tax_id": 9031, "disease": "", "pathway": " (gga:426393)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052532.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 4, 2016 this sequence version replaced XP_424044.3. COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RQX0-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RR59-1", "uniprot_id": [ { "id": "A0A1L1RR59_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RR59", "type": "external" } ], "mass": 52643.0, "length": 473, "protein_name": "Coiled-coil domain containing 85A", "gene_name": "CCDC85A", "organism": "Chicken", "refseq_name": "coiled-coil domain-containing protein 85A isoform X1", "refseq_ac": [ { "id": "XP_015138801", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_015138801", "type": "external" } ], "gene_names_uniprotkb": "CCDC85A", "gene_names_refseq": "CCDC85A", "protein_names_uniprotkb": "Coiled-coil domain containing 85A", "protein_names_refseq": "coiled-coil domain-containing protein 85A isoform X1", "tax_id": 9031, "disease": "", "pathway": " (gga:421205)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052534.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0005912 adherens junction", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RR59-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RR91-1", "uniprot_id": [ { "id": "A0A1L1RR91_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RR91", "type": "external" } ], "mass": 40382.0, "length": 358, "protein_name": "DnaJ homolog subfamily B member 11", "gene_name": "DNAJB11", "organism": "Chicken", "refseq_name": "dnaJ homolog subfamily B member 11", "refseq_ac": [ { "id": "XP_422682", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_422682", "type": "external" } ], "gene_names_uniprotkb": "DNAJB11", "gene_names_refseq": "DNAJB11", "protein_names_uniprotkb": "DnaJ homolog subfamily B member 11; ER-associated DNAJ; ER-associated Hsp40 co-chaperone; Endoplasmic reticulum DNA J domain-containing protein 3", "protein_names_refseq": "dnaJ homolog subfamily B member 11", "tax_id": 9031, "disease": "", "pathway": " (gga:424868)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052540.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]; As a co-chaperone for HSPA5 it is required for proper folding, trafficking or degradation of proteins. Binds directly to both unfolded proteins that are substrates for ERAD and nascent unfolded peptide chains, but dissociates from the HSPA5-unfolded protein complex before folding is completed. May help recruiting HSPA5 and other chaperones to the substrate. Stimulates HSPA5 ATPase activity. It is necessary for maturation and correct trafficking of PKD1., [UniProtKB, UniProtKB, UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0005102 signaling receptor binding;GO:0051082 unfolded protein binding;GO:0051787 misfolded protein binding", "go_cellular_component": "GO:0005615 extracellular space;GO:0005634 nucleus;GO:0005783 endoplasmic reticulum;GO:0101031 protein folding chaperone complex", "go_biological_process": "GO:0016556 mRNA modification;GO:0006457 protein folding;GO:0050768 negative regulation of neurogenesis;GO:0051604 protein maturation", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RR91-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RRD7-1", "uniprot_id": [ { "id": "A0A1L1RRD7_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RRD7", "type": "external" } ], "mass": 31473.0, "length": 275, "protein_name": "Myeloid leukemia factor 1", "gene_name": "MLF1", "organism": "Chicken", "refseq_name": "myeloid leukemia factor 1 isoform X4", "refseq_ac": [ { "id": "XP_004943599", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_004943599", "type": "external" } ], "gene_names_uniprotkb": "MLF1", "gene_names_refseq": "MLF1", "protein_names_uniprotkb": "Myeloid leukemia factor 1", "protein_names_refseq": "myeloid leukemia factor 1 isoform X4", "tax_id": 9031, "disease": "", "pathway": " (gga:425019)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052540.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0005634 nucleus;GO:0005737 cytoplasm", "go_biological_process": "GO:0006355 regulation of DNA-templated transcription", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RRD7-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RRE8-1", "uniprot_id": [ { "id": "A0A1L1RRE8_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RRE8", "type": "external" } ], "mass": 18599.0, "length": 167, "protein_name": "Adenosine 5'-monophosphoramidase HINT3", "gene_name": "HINT3", "organism": "Chicken", "refseq_name": "adenosine 5'-monophosphoramidase HINT3", "refseq_ac": [ { "id": "XP_001232866", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001232866", "type": "external" } ], "gene_names_uniprotkb": "HINT3", "gene_names_refseq": "HINT3", "protein_names_uniprotkb": "Adenosine 5'-monophosphoramidase HINT3; Histidine triad nucleotide-binding protein 3", "protein_names_refseq": "adenosine 5'-monophosphoramidase HINT3", "tax_id": 9031, "disease": "", "pathway": " (gga:769579)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052534.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 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{ "uniprot_canonical_ac": "A0A1L1RRQ3-1", "uniprot_id": [ { "id": "A0A1L1RRQ3_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RRQ3", "type": "external" } ], "mass": 91037.0, "length": 793, "protein_name": "Kinesin associated protein 3", "gene_name": "KIFAP3", "organism": "Chicken", "refseq_name": "kinesin-associated protein 3 isoform X2", "refseq_ac": [ { "id": "XP_015145925", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_015145925", "type": "external" } ], "gene_names_uniprotkb": "KIFAP3", "gene_names_refseq": "KIFAP3", "protein_names_uniprotkb": "Kinesin associated protein 3", "protein_names_refseq": "kinesin-associated protein 3 isoform X2", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-5620924); (R-GGA-6811434); (R-GGA-983189)", "pathway_count": 3, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation 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This record is derived from a genomic sequence (NC_052539.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0019894 kinesin binding;GO:0019903 protein phosphatase binding;GO:0120170 intraciliary transport particle B binding", "go_cellular_component": "GO:0005871 kinesin complex;GO:0098978 glutamatergic synapse;GO:0000794 condensed nuclear chromosome;GO:0005783 endoplasmic reticulum;GO:0005794 Golgi apparatus", "go_biological_process": "GO:0046587 positive regulation of calcium-dependent cell-cell adhesion;GO:0070244 negative regulation of thymocyte apoptotic process;GO:0007018 microtubule-based movement;GO:0008104 protein localization;GO:0010667 negative regulation of cardiac muscle cell apoptotic process", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RRQ3-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RRW4-1", "uniprot_id": [ { "id": "A0A1L1RRW4_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RRW4", "type": "external" } ], "mass": 54859.0, "length": 513, "protein_name": "Transcription factor like 5", "gene_name": "TCFL5", "organism": "Chicken", "refseq_name": "transcription factor-like 5 protein isoform X1", "refseq_ac": [ { "id": "XP_001234727", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001234727", "type": "external" } ], "gene_names_uniprotkb": "TCFL5", "gene_names_refseq": "TCFL5", "protein_names_uniprotkb": "Transcription factor like 5", "protein_names_refseq": "transcription factor-like 5 protein isoform X1", "tax_id": 9031, "disease": "", "pathway": " (gga:771446)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052551.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 4, 2016 this sequence version replaced XP_001234727.1. COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0046983 protein dimerization activity;GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific;GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding;GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific", "go_cellular_component": "GO:0005634 nucleus;GO:0001673 male germ cell nucleus", "go_biological_process": "GO:0007283 spermatogenesis;GO:0030154 cell differentiation;GO:0042127 regulation of cell population proliferation;GO:0006355 regulation of DNA-templated transcription;GO:0045595 regulation of cell differentiation", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RRW4-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RRY6-1", "uniprot_id": [ { "id": "A0A1L1RRY6_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RRY6", "type": "external" } ], "mass": 54879.0, "length": 496, "protein_name": "THUMP domain containing 3", "gene_name": "THUMPD3", "organism": "Chicken", "refseq_name": "THUMP domain-containing protein 3 isoform X1", "refseq_ac": [ { "id": "XP_414446", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_414446", "type": "external" } ], "gene_names_uniprotkb": "THUMPD3", "gene_names_refseq": "THUMPD3", "protein_names_uniprotkb": "THUMP domain containing 3", "protein_names_refseq": "THUMP domain-containing protein 3 isoform X1", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052543.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Nov 16, 2006 this sequence version replaced XP_414446.1. COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0016423 tRNA (guanine) methyltransferase activity;GO:0003723 RNA binding;GO:0160117 tRNA (guanine(6)-N2)-methyltransferase activity;GO:0160118 tRNA (guanine(7)-N2)-methyltransferase activity;GO:0008168 methyltransferase activity", "go_cellular_component": "GO:0005730 nucleolus;GO:0005829 cytosol;GO:0043527 tRNA methyltransferase complex;GO:0005737 cytoplasm", "go_biological_process": "GO:0030488 tRNA methylation;GO:0008033 tRNA processing;GO:0032259 methylation", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RRY6-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RS25-1", "uniprot_id": [ { "id": "A0A1L1RS25_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RS25", "type": "external" } ], "mass": 32234.0, "length": 289, "protein_name": "TLR adaptor interacting with endolysosomal SLC15A4", "gene_name": "CXorf21", "organism": "Chicken", "refseq_name": "TLR adapter interacting with SLC15A4 on the lysosome", "refseq_ac": [ { "id": "XP_003640560", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003640560", "type": "external" } ], "gene_names_uniprotkb": "CXorf21", "gene_names_refseq": "CXorf21", "protein_names_uniprotkb": "TLR adaptor interacting with endolysosomal SLC15A4", "protein_names_refseq": "TLR adapter interacting with SLC15A4 on the lysosome", "tax_id": 9031, "disease": "", "pathway": " (gga:100857674); (R-GGA-9860276)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052532.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0005654 nucleoplasm;GO:0005829 cytosol;GO:0036020 endolysosome membrane", "go_biological_process": "GO:0034121 regulation of toll-like receptor signaling pathway;GO:0034157 positive regulation of toll-like receptor 7 signaling pathway;GO:0035751 regulation of lysosomal lumen pH;GO:0034161 positive regulation of toll-like receptor 8 signaling pathway", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RS25-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RSA7-1", "uniprot_id": [ { "id": "A0A1L1RSA7_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RSA7", "type": "external" } ], "mass": 56596.0, "length": 515, "protein_name": "Ankyrin repeat domain 34B", "gene_name": "ANKRD34B", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "ANKRD34B", "gene_names_refseq": "", "protein_names_uniprotkb": "Ankyrin repeat domain 34B", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (gga:431626)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RSA7-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RSB5-1", "uniprot_id": [ { "id": "A0A1L1RSB5_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RSB5", "type": "external" } ], "mass": 9725.0, "length": 86, "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "organism": "Chicken", "refseq_name": "small nuclear ribonucleoprotein F", "refseq_ac": [ { "id": "NP_001264291", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001264291", "type": "external" } ], "gene_names_uniprotkb": "SNRPF", "gene_names_refseq": "SNRPF", "protein_names_uniprotkb": "Small nuclear ribonucleoprotein F; Sm protein F", "protein_names_refseq": "small nuclear ribonucleoprotein F", "tax_id": 9031, "disease": "", "pathway": " (gga:417916); (R-GGA-111367); (R-GGA-191859); (R-GGA-72163); (R-GGA-72165); (R-GGA-73856); (R-GGA-77588); (R-GGA-9770562)", "pathway_count": 8, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: HAEL01013670.1, HAEK01110529.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000012.1. On Apr 5, 2013 this sequence version replaced XP_416157.2., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0003723 RNA binding", "go_cellular_component": "GO:0005685 U1 snRNP;GO:0005829 cytosol;GO:0034709 methylosome;GO:0071013 catalytic step 2 spliceosome;GO:0034715 pICln-Sm protein complex", "go_biological_process": "GO:0000387 spliceosomal snRNP assembly;GO:0000398 mRNA splicing, via spliceosome", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RSB5-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RSD2-1", "uniprot_id": [ { "id": "A0A1L1RSD2_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RSD2", "type": "external" } ], "mass": 75906.0, "length": 670, "protein_name": "Beta-glucuronidase", "gene_name": "GUSB", "organism": "Chicken", "refseq_name": "beta-glucuronidase isoform X1", "refseq_ac": [ { "id": "XP_015151296", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_015151296", "type": "external" } ], "gene_names_uniprotkb": "GUSB", "gene_names_refseq": "GUSB; beta-glucuronidase", "protein_names_uniprotkb": "Beta-glucuronidase; 3.2.1.31", "protein_names_refseq": "beta-glucuronidase isoform X1", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-2024101); (R-GGA-2160916); (R-GGA-6798695)", "pathway_count": 3, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052550.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]; Plays an important role in the degradation of dermatan and keratan sulfates., [UniProtKB, UniProtKB, UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [ { "id": "2.7.11.24", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.11.24", "type": "external" }, { "id": "3.1.3.16", "url": "https://www.rhea-db.org/rhea/?query=ec:3.1.3.16", "type": "external" }, { "id": "1.11.1.24", "url": "https://www.rhea-db.org/rhea/?query=ec:1.11.1.24", "type": "external" }, { "id": "3.1.6.4", "url": "https://www.rhea-db.org/rhea/?query=ec:3.1.6.4", "type": "external" }, { "id": "3.4.21.4", "url": "https://www.rhea-db.org/rhea/?query=ec:3.4.21.4", "type": "external" }, { "id": "2.3.3.8", "url": "https://www.rhea-db.org/rhea/?query=ec:2.3.3.8", "type": "external" }, { "id": "2.7.11.13", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.11.13", "type": "external" }, { "id": "3.2.1.31", "url": "https://www.rhea-db.org/rhea/?query=ec:3.2.1.31", "type": "external" }, { "id": "2.4.1.186", "url": "https://www.rhea-db.org/rhea/?query=ec:2.4.1.186", "type": "external" }, { "id": "4.1.2.13", "url": "https://www.rhea-db.org/rhea/?query=ec:4.1.2.13", "type": "external" }, { "id": "3.4.19.9", "url": "https://www.rhea-db.org/rhea/?query=ec:3.4.19.9", "type": "external" }, { "id": "3.4.22.52", "url": "https://www.rhea-db.org/rhea/?query=ec:3.4.22.52", "type": "external" }, { "id": "3.6.4.13", "url": "https://www.rhea-db.org/rhea/?query=ec:3.6.4.13", "type": "external" }, { "id": "3.4.14.1", "url": "https://www.rhea-db.org/rhea/?query=ec:3.4.14.1", "type": "external" }, { "id": "2.3.2.5", "url": "https://www.rhea-db.org/rhea/?query=ec:2.3.2.5", "type": "external" }, { "id": "5.3.1.9", "url": "https://www.rhea-db.org/rhea/?query=ec:5.3.1.9", "type": "external" }, { "id": "3.1.6.8", "url": "https://www.rhea-db.org/rhea/?query=ec:3.1.6.8", "type": "external" }, { "id": "3.4.22.1", "url": "https://www.rhea-db.org/rhea/?query=ec:3.4.22.1", "type": "external" }, { "id": "2.7.1.1", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.1.1", "type": "external" }, { "id": "6.3.4.21", "url": "https://www.rhea-db.org/rhea/?query=ec:6.3.4.21", "type": "external" }, { "id": "3.3.2.6", "url": "https://www.rhea-db.org/rhea/?query=ec:3.3.2.6", "type": "external" }, { "id": "5.3.4.1", "url": "https://www.rhea-db.org/rhea/?query=ec:5.3.4.1", "type": "external" }, { "id": "2.3.2.27", "url": "https://www.rhea-db.org/rhea/?query=ec:2.3.2.27", "type": "external" }, { "id": "3.6.4.6", "url": "https://www.rhea-db.org/rhea/?query=ec:3.6.4.6", "type": "external" }, { "id": "4.1.2.4", "url": "https://www.rhea-db.org/rhea/?query=ec:4.1.2.4", "type": "external" }, { "id": "1.11.1.27", "url": "https://www.rhea-db.org/rhea/?query=ec:1.11.1.27", "type": "external" }, { "id": "3.2.1.51", "url": "https://www.rhea-db.org/rhea/?query=ec:3.2.1.51", "type": "external" }, { "id": "3.2.1.-", "url": "https://www.rhea-db.org/rhea/?query=ec:3.2.1.-", "type": "external" }, { "id": "2.7.10.2", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.10.2", "type": "external" }, { "id": "3.4.24.35", "url": "https://www.rhea-db.org/rhea/?query=ec:3.4.24.35", "type": "external" }, { "id": "5.2.1.8", "url": "https://www.rhea-db.org/rhea/?query=ec:5.2.1.8", "type": "external" }, { "id": "3.2.1.23", "url": "https://www.rhea-db.org/rhea/?query=ec:3.2.1.23", "type": "external" }, { "id": "2.4.1.1", "url": "https://www.rhea-db.org/rhea/?query=ec:2.4.1.1", "type": "external" }, { "id": "5.4.2.11", "url": "https://www.rhea-db.org/rhea/?query=ec:5.4.2.11", "type": "external" }, { "id": "5.4.2.4", "url": "https://www.rhea-db.org/rhea/?query=ec:5.4.2.4", "type": "external" }, { "id": "3.5.4.5", "url": "https://www.rhea-db.org/rhea/?query=ec:3.5.4.5", "type": "external" }, { "id": "2.7.1.40", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.1.40", "type": "external" }, { "id": "1.1.1.42", "url": "https://www.rhea-db.org/rhea/?query=ec:1.1.1.42", "type": "external" }, { "id": "2.4.1.25", "url": "https://www.rhea-db.org/rhea/?query=ec:2.4.1.25", "type": "external" }, { "id": "3.2.1.33", "url": "https://www.rhea-db.org/rhea/?query=ec:3.2.1.33", "type": "external" }, { "id": "3.1.1.47", "url": "https://www.rhea-db.org/rhea/?query=ec:3.1.1.47", "type": "external" }, { "id": "2.7.1.11", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.1.11", "type": "external" }, { "id": "1.11.1.6", "url": "https://www.rhea-db.org/rhea/?query=ec:1.11.1.6", "type": "external" }, { "id": "1.13.11.34", "url": "https://www.rhea-db.org/rhea/?query=ec:1.13.11.34", "type": "external" }, { "id": "3.4.19.1", "url": "https://www.rhea-db.org/rhea/?query=ec:3.4.19.1", "type": "external" }, { "id": "5.3.2.1", "url": "https://www.rhea-db.org/rhea/?query=ec:5.3.2.1", "type": "external" }, { "id": "5.3.3.12", "url": "https://www.rhea-db.org/rhea/?query=ec:5.3.3.12", "type": "external" }, { "id": "4.2.1.24", "url": "https://www.rhea-db.org/rhea/?query=ec:4.2.1.24", "type": "external" }, { "id": "3.4.14.2", "url": "https://www.rhea-db.org/rhea/?query=ec:3.4.14.2", "type": "external" }, { "id": "5.3.99.3", "url": "https://www.rhea-db.org/rhea/?query=ec:5.3.99.3", "type": "external" }, { "id": "3.6.1.6", "url": "https://www.rhea-db.org/rhea/?query=ec:3.6.1.6", "type": "external" }, { "id": "3.5.4.6", "url": "https://www.rhea-db.org/rhea/?query=ec:3.5.4.6", "type": "external" }, { "id": "3.1.6.14", "url": "https://www.rhea-db.org/rhea/?query=ec:3.1.6.14", "type": "external" }, { "id": "3.5.4.4", "url": "https://www.rhea-db.org/rhea/?query=ec:3.5.4.4", "type": "external" }, { "id": "5.4.2.2", "url": "https://www.rhea-db.org/rhea/?query=ec:5.4.2.2", "type": "external" }, { "id": "3.5.1.26", "url": "https://www.rhea-db.org/rhea/?query=ec:3.5.1.26", "type": "external" }, { "id": "3.2.1.52", "url": "https://www.rhea-db.org/rhea/?query=ec:3.2.1.52", "type": "external" }, { "id": "2.7.4.6", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.4.6", "type": "external" }, { "id": "3.2.1.17", "url": "https://www.rhea-db.org/rhea/?query=ec:3.2.1.17", "type": "external" }, { "id": "1.16.3.1", "url": "https://www.rhea-db.org/rhea/?query=ec:1.16.3.1", "type": "external" }, { "id": "3.1.27.-", "url": "https://www.rhea-db.org/rhea/?query=ec:3.1.27.-", "type": "external" }, { "id": "3.4.23.5", "url": "https://www.rhea-db.org/rhea/?query=ec:3.4.23.5", "type": "external" }, { "id": "1.1.1.205", "url": "https://www.rhea-db.org/rhea/?query=ec:1.1.1.205", "type": "external" }, { "id": "3.6.5.-", "url": "https://www.rhea-db.org/rhea/?query=ec:3.6.5.-", "type": "external" }, { "id": "3.5.1.23", "url": "https://www.rhea-db.org/rhea/?query=ec:3.5.1.23", "type": "external" }, { "id": "3.5.3.15", "url": "https://www.rhea-db.org/rhea/?query=ec:3.5.3.15", "type": "external" } ], "go_molecular_function": "GO:0005102 signaling receptor binding;GO:0019904 protein domain specific binding;GO:0030246 carbohydrate binding;GO:0004566 beta-glucuronidase activity;GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds", "go_cellular_component": "GO:0005615 extracellular space;GO:0043202 lysosomal lumen;GO:0005764 lysosome", "go_biological_process": "GO:0005975 carbohydrate metabolic process;GO:0030207 chondroitin sulfate proteoglycan catabolic process;GO:0030200 heparan sulfate proteoglycan catabolic process;GO:0030214 hyaluronan catabolic process", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RSD2-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RSD4-1", "uniprot_id": [ { "id": "A0A1L1RSD4_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RSD4", "type": "external" } ], "mass": 45385.0, "length": 412, "protein_name": "Protein farnesyltransferase subunit beta", "gene_name": "FNTB", "organism": "Chicken", "refseq_name": "farnesyltransferase, CAAX box, beta", "refseq_ac": [ { "id": "NP_001383594", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001383594", "type": "external" } ], "gene_names_uniprotkb": "FNTB", "gene_names_refseq": "FNTB", "protein_names_uniprotkb": "Protein farnesyltransferase subunit beta; 2.5.1.58; FTase-beta", "protein_names_refseq": "farnesyltransferase, CAAX box, beta", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-9648002); (R-GGA-9953170)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: HAEL01005791.1, HAEK01187358.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA103992290, SAMEA103992323 [ECO:0006172] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from HAEL01005791.1, JAENSK010000212.1, CR387309.1 and HAEK01027120.1. On or before Oct 25, 2021 this sequence version replaced XP_025006977.1, XP_040528483.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments., [RefSeq]; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding., [UniProtKB, UniProtKB]; Essential subunit of the farnesyltransferase complex. Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [ { "id": "2.5.1.58", "url": "https://www.rhea-db.org/rhea/?query=ec:2.5.1.58", "type": "external" }, { "id": "2.5.1.59", "url": "https://www.rhea-db.org/rhea/?query=ec:2.5.1.59", "type": "external" }, { "id": "3.6.5.2", "url": "https://www.rhea-db.org/rhea/?query=ec:3.6.5.2", "type": "external" } ], "go_molecular_function": "GO:0004660 protein farnesyltransferase activity;GO:0008270 zinc ion binding;GO:0019899 enzyme binding;GO:0010698 acetyltransferase activator activity", "go_cellular_component": "GO:0005965 protein farnesyltransferase complex;GO:0005875 microtubule associated complex", "go_biological_process": "GO:0006629 lipid metabolic process;GO:0060632 regulation of microtubule-based movement;GO:0097354 prenylation", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RSD4-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RSL3-1", "uniprot_id": [ { "id": "A0A1L1RSL3_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RSL3", "type": "external" } ], "mass": 39537.0, "length": 344, "protein_name": "G protein-coupled receptor 82", "gene_name": "GPR82", "organism": "Chicken", "refseq_name": "probable G-protein coupled receptor 82", "refseq_ac": [ { "id": "XP_004934660", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_004934660", "type": "external" } ], "gene_names_uniprotkb": "GPR82", "gene_names_refseq": "GPR82", "protein_names_uniprotkb": "G protein-coupled receptor 82", "protein_names_refseq": "probable G-protein coupled receptor 82", "tax_id": 9031, "disease": "", "pathway": " (gga:101750076)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052532.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0004930 G protein-coupled receptor activity", "go_cellular_component": "GO:0016020 membrane", "go_biological_process": "GO:0006641 triglyceride metabolic process;GO:0060612 adipose tissue development;GO:0032094 response to food;GO:0097009 energy homeostasis;GO:0032868 response to insulin", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RSL3-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RSX7-1", "uniprot_id": [ { "id": "A0A1L1RSX7_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RSX7", "type": "external" } ], "mass": 18264.0, "length": 157, "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "LOC107055485", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "LOC107055485", "gene_names_refseq": "", "protein_names_uniprotkb": "Large ribosomal subunit protein uL22; 60S ribosomal protein L17", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-1799339); (R-GGA-72706); (R-GGA-975956); (R-GGA-975957); (R-GGA-9954709); (R-GGA-9954714); (R-GGA-9954716)", "pathway_count": 7, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0003735 structural constituent of ribosome", "go_cellular_component": "GO:0022625 cytosolic large ribosomal subunit", "go_biological_process": "GO:0002181 cytoplasmic translation", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RSX7-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RT00-1", "uniprot_id": [ { "id": "A0A1L1RT00_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RT00", "type": "external" } ], "mass": 35736.0, "length": 319, "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "organism": "Chicken", "refseq_name": "retinol dehydrogenase 5 precursor", "refseq_ac": [ { "id": "NP_990044", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_990044", "type": "external" } ], "gene_names_uniprotkb": "RDH5", "gene_names_refseq": "RDH5", "protein_names_uniprotkb": "Retinol dehydrogenase 5", "protein_names_refseq": "11-cis retinol dehydrogenase; retinol dehydrogenase 5 (11-cis/9-cis); retinol dehydrogenase 5 precursor", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-2453902); (R-GGA-5365859)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: AF285079.1, SRR13267659.311606.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN02738229 [ECO:0000348] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000491.1. On Oct 29, 2021 this sequence version replaced NP_990044.1., [RefSeq]", "predicted_glycosites": 1, "predicted_n_glycosites": 0, "predicted_o_glycosites": 1, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 1, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0016491 oxidoreductase activity;GO:0004745 all-trans-retinol dehydrogenase (NAD+) activity", "go_cellular_component": "", "go_biological_process": "GO:0001523 retinoid metabolic process;GO:0008202 steroid metabolic process", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RT00-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000001000.001.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RT22-1", "uniprot_id": [ { "id": "A0A1L1RT22_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RT22", "type": "external" } ], "mass": 151157.0, "length": 1323, "protein_name": "DENN domain containing 5A", "gene_name": "DENND5A", "organism": "Chicken", "refseq_name": "DENN domain-containing protein 5A isoform X1", "refseq_ac": [ { "id": "XP_015141954", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_015141954", "type": "external" } ], "gene_names_uniprotkb": "DENND5A", "gene_names_refseq": "DENND5A", "protein_names_uniprotkb": "DENN domain containing 5A", "protein_names_refseq": "DENN domain-containing protein 5A isoform X1", "tax_id": 9031, "disease": "", "pathway": " (gga:423048); (R-GGA-8876198)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052536.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0005085 guanyl-nucleotide exchange factor activity;GO:0031267 small GTPase binding", "go_cellular_component": "GO:0005829 cytosol;GO:0005802 trans-Golgi network;GO:0030904 retromer complex;GO:0016020 membrane", "go_biological_process": "GO:0042147 retrograde transport, endosome to Golgi", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RT22-1", "record_type": "protein", "filter_code": "0000000.0000001.010000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RT72-1", "uniprot_id": [ { "id": "A0A1L1RT72_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RT72", "type": "external" } ], "mass": 26717.0, "length": 246, "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG13", "gene_name": "", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "", "gene_names_refseq": "", "protein_names_uniprotkb": "UDP-N-acetylglucosamine transferase subunit ALG13; 2.4.1.141", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-446193)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 1, "predicted_n_glycosites": 0, "predicted_o_glycosites": 1, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 1, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [ { "id": "2.4.1.141", "url": "https://www.rhea-db.org/rhea/?query=ec:2.4.1.141", "type": "external" } ], "go_molecular_function": "GO:0004577 N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity;GO:0016758 hexosyltransferase activity", "go_cellular_component": "GO:0005783 endoplasmic reticulum", "go_biological_process": "GO:0006488 dolichol-linked oligosaccharide biosynthetic process", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RT72-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000001000.001.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RT94-1", "uniprot_id": [ { "id": "A0A1L1RT94_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RT94", "type": "external" } ], "mass": 19797.0, "length": 176, "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "RPL31", "gene_names_refseq": "", "protein_names_uniprotkb": "Large ribosomal subunit protein eL31; 60S ribosomal protein L31", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-1799339); (R-GGA-72706); (R-GGA-975956); (R-GGA-975957); (R-GGA-9954709); (R-GGA-9954714); (R-GGA-9954716)", "pathway_count": 7, "publication_count": 1, "publication_id_list": "38395592", "class_list": "", "function": "Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0003735 structural constituent of ribosome", "go_cellular_component": "GO:0045202 synapse;GO:0022625 cytosolic large ribosomal subunit", "go_biological_process": "GO:0002181 cytoplasmic translation", "synthesized_glycan_count": 0, "hit_score": 0.2, "record_id": "A0A1L1RT94-1", "record_type": "protein", "filter_code": "0000000.0000101.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RTH3-1", "uniprot_id": [ { "id": "A0A1L1RTH3_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RTH3", "type": "external" } ], "mass": 30462.0, "length": 276, "protein_name": "Hydroxysteroid 17-beta dehydrogenase 3", "gene_name": "HSD17B3", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "HSD17B3", "gene_names_refseq": "", "protein_names_uniprotkb": "Hydroxysteroid 17-beta dehydrogenase 3", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-193048); 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(R-GGA-2142770)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052577.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0005506 iron ion binding;GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen", "go_cellular_component": "GO:0005737 cytoplasm", "go_biological_process": "GO:0034440 lipid oxidation;GO:0019372 lipoxygenase pathway;GO:0019369 arachidonate metabolic process", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RTQ1-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RTV6-1", "uniprot_id": [ { "id": "A0A1L1RTV6_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RTV6", "type": "external" } ], "mass": 35064.0, "length": 315, "protein_name": "Olfactory receptor", "gene_name": "LOC769317", "organism": "Chicken", "refseq_name": "olfactory receptor 52R1-like", "refseq_ac": [ { "id": "XP_004949864", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_004949864", "type": "external" } ], "gene_names_uniprotkb": "LOC769317", "gene_names_refseq": "LOC769317", "protein_names_uniprotkb": "Olfactory receptor", "protein_names_refseq": "olfactory receptor 52R1-like", "tax_id": 9031, "disease": "", "pathway": " (gga:769317)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052532.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]; Odorant receptor., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0004930 G protein-coupled receptor activity;GO:0004984 olfactory receptor activity", "go_cellular_component": "GO:0005886 plasma membrane", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RTV6-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RUB9-1", "uniprot_id": [ { "id": "A0A1L1RUB9_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RUB9", "type": "external" } ], "mass": 39723.0, "length": 362, "protein_name": "Replication factor C subunit 4", "gene_name": "RFC4", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "RFC4", "gene_names_refseq": "", "protein_names_uniprotkb": "Replication factor C subunit 4; Activator 1 subunit 4", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-110312); (R-GGA-110314); (R-GGA-110320); (R-GGA-174411); (R-GGA-176187); (R-GGA-5651801); (R-GGA-5655862); (R-GGA-5656121); (R-GGA-5656169); (R-GGA-5685938); (R-GGA-5685942); (R-GGA-5693537); (R-GGA-5693607); (R-GGA-5696397); (R-GGA-5696400); (R-GGA-6782135); (R-GGA-6782210); (R-GGA-69091)", "pathway_count": 18, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "Subunit of the replication factor C (RFC) complex which acts during elongation of primed DNA templates by DNA polymerases delta and epsilon, and is necessary for ATP-dependent loading of proliferating cell nuclear antigen (PCNA) onto primed DNA. The RFC4 subunit probably functions as a scaffold on which the other complex components can assemble., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0003677 DNA binding;GO:0005524 ATP binding;GO:0016887 ATP hydrolysis activity;GO:0003689 DNA clamp loader activity;GO:0017116 single-stranded DNA helicase activity", "go_cellular_component": "GO:0005634 nucleus;GO:0005654 nucleoplasm;GO:0031390 Ctf18 RFC-like complex;GO:0031391 Elg1 RFC-like complex;GO:0005663 DNA replication factor C complex", "go_biological_process": "GO:0006281 DNA repair;GO:0006261 DNA-templated DNA replication;GO:0006260 DNA replication", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RUB9-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RUD0-1", "uniprot_id": [ { "id": "A0A1L1RUD0_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RUD0", "type": "external" } ], "mass": 31196.0, "length": 280, "protein_name": "Uncharacterized protein", "gene_name": "LOC100859850", "organism": "Chicken", "refseq_name": "uncharacterized protein LOC100859850", "refseq_ac": [ { "id": "XP_003642901", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003642901", "type": "external" } ], "gene_names_uniprotkb": "LOC100859850", "gene_names_refseq": "LOC100859850", "protein_names_uniprotkb": "Uncharacterized protein", "protein_names_refseq": "uncharacterized protein LOC100859850", "tax_id": 9031, "disease": "", "pathway": " (gga:100859850)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052559.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RUD0-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RUD3-1", "uniprot_id": [ { "id": "A0A1L1RUD3_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RUD3", "type": "external" } ], "mass": 23262.0, "length": 198, "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "organism": "Chicken", "refseq_name": "rRNA-processing protein FCF1 homolog", "refseq_ac": [ { "id": "XP_421270", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_421270", "type": "external" } ], "gene_names_uniprotkb": "FCF1", "gene_names_refseq": "FCF1", "protein_names_uniprotkb": "rRNA-processing protein FCF1 homolog", "protein_names_refseq": "rRNA-processing protein FCF1 homolog", "tax_id": 9031, "disease": "", "pathway": " (gga:423355); (R-GGA-6791226)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052536.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]; Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "F1N963", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0005730 nucleolus;GO:0032040 small-subunit processome", "go_biological_process": "GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA);GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RUD3-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RUN2-1", "uniprot_id": [ { "id": "A0A1L1RUN2_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RUN2", "type": "external" } ], "mass": 21340.0, "length": 205, "protein_name": "V-type proton ATPase 21 kDa proteolipid subunit c''", "gene_name": "ATP6V0B", "organism": "Chicken", "refseq_name": "V-type proton ATPase 21 kDa proteolipid subunit c''", "refseq_ac": [ { "id": "NP_001264501", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001264501", "type": "external" } ], "gene_names_uniprotkb": "ATP6V0B", "gene_names_refseq": "ATP6V0B", "protein_names_uniprotkb": "V-type proton ATPase 21 kDa proteolipid subunit c''; Vacuolar proton pump 21 kDa proteolipid subunit c''", "protein_names_refseq": "ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b; V-type proton ATPase 21 kDa proteolipid subunit c''", "tax_id": 9031, "disease": "", "pathway": " (gga:424575); (R-GGA-1222556); (R-GGA-77387); (R-GGA-917977); (R-GGA-9639288)", "pathway_count": 5, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: CR407484.1, HAEK01188254.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000239.1. On Apr 12, 2013 this sequence version replaced XP_003641751.1., [RefSeq]; Proton-conducting pore forming of the V0 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons. V-ATPase is responsible for acidifying and maintaining the pH of intracellular compartments and in some cell types, is targeted to the plasma membrane, where it is responsible for acidifying the extracellular environment., [UniProtKB, UniProtKB]; Proton-conducting pore forming subunit of the V0 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons. V-ATPase is responsible for acidifying and maintaining the pH of intracellular compartments and in some cell types, is targeted to the plasma membrane, where it is responsible for acidifying the extracellular environment., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0046961 proton-transporting ATPase activity, rotational mechanism", "go_cellular_component": "GO:0005768 endosome;GO:0016020 membrane;GO:0030665 clathrin-coated vesicle membrane;GO:0033179 proton-transporting V-type ATPase, V0 domain", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RUN2-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RUU1-1", "uniprot_id": [ { "id": "A0A1L1RUU1_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RUU1", "type": "external" } ], "mass": 9394.0, "length": 84, "protein_name": "Uncharacterized protein", "gene_name": "", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "", "gene_names_refseq": "", "protein_names_uniprotkb": "Uncharacterized protein", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RUU1-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RUU9-1", "uniprot_id": [ { "id": "A0A1L1RUU9_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RUU9", "type": "external" } ], "mass": 19883.0, "length": 172, "protein_name": "Myosin light chain 12B", "gene_name": "MYL12B", "organism": "Chicken", "refseq_name": "myosin regulatory light chain 2, smooth muscle minor isoform", "refseq_ac": [ { "id": "XP_001233329", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001233329", "type": "external" } ], "gene_names_uniprotkb": "MYL12B", "gene_names_refseq": "MYL12B", "protein_names_uniprotkb": "Myosin light chain 12B", "protein_names_refseq": "myosin regulatory light chain 2, smooth muscle minor isoform", "tax_id": 9031, "disease": "", "pathway": " (gga:770011); (R-GGA-445355); (R-GGA-5627123)", "pathway_count": 3, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052533.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 16, 2011 this sequence version replaced XP_001233329.1. COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "A0A1D5PNS5", "ec_number_list": [], "go_molecular_function": "GO:0005509 calcium ion binding;GO:0032036 myosin heavy chain binding", "go_cellular_component": "GO:0005737 cytoplasm;GO:0001725 stress fiber;GO:0030016 myofibril;GO:0016460 myosin II complex", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RUU9-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RUW4-1", "uniprot_id": [ { "id": "A0A1L1RUW4_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RUW4", "type": "external" } ], "mass": 16666.0, "length": 161, "protein_name": "Hematological and neurological expressed 1", "gene_name": "HN1", "organism": "Chicken", "refseq_name": "jupiter microtubule associated homolog 1 isoform 1", "refseq_ac": [ { "id": "NP_001376350", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001376350", "type": "external" } ], "gene_names_uniprotkb": "HN1", "gene_names_refseq": "ARM2; HN1A; HN1; JPT1", "protein_names_uniprotkb": "Hematological and neurological expressed 1", "protein_names_refseq": "Jupiter microtubule associated homolog 1; hematological and neurological expressed 1 protein; jupiter microtubule associated homolog 1 isoform 1", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 1, "publication_id_list": "15094197", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: HAEL01003233.1, AJ395536.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992484 [ECO:0000348] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000317.1. On Dec 21, 2020 this sequence version replaced XP_015150886.1., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0005634 nucleus;GO:0005737 cytoplasm;GO:0005654 nucleoplasm;GO:0005829 cytosol;GO:0015630 microtubule cytoskeleton", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.2, "record_id": "A0A1L1RUW4-1", "record_type": "protein", "filter_code": "0000000.0000100.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RUW7-1", "uniprot_id": [ { "id": "A0A1L1RUW7_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RUW7", "type": "external" } ], "mass": 20210.0, "length": 187, "protein_name": "Deoxyuridine 5'-triphosphate nucleotidohydrolase", "gene_name": "DUT", "organism": "Chicken", "refseq_name": "deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial isoform 2", "refseq_ac": [ { "id": "NP_001383138", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001383138", "type": "external" } ], "gene_names_uniprotkb": "DUT", "gene_names_refseq": "DUT", "protein_names_uniprotkb": "Deoxyuridine 5'-triphosphate nucleotidohydrolase; 3.6.1.23; dUTP pyrophosphatase; dUTPase", "protein_names_refseq": "dUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial isoform 2; deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-499943)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: HAEK01002461.1, ERR2368565.328967.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: inferred from homology ##RefSeq-Attributes-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000245.1. On Oct 4, 2021 this sequence version replaced XP_025009642.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments., [RefSeq]; Catalyzes the cleavage of 2'-deoxyuridine 5'-triphosphate (dUTP) into 2'-deoxyuridine 5'-monophosphate (dUMP) and inorganic pyrophosphate and through its action efficiently prevents uracil misincorporation into DNA and at the same time provides dUMP, the substrate for de novo thymidylate biosynthesis. Inhibits peroxisome proliferator-activated receptor (PPAR) activity by binding of its N-terminal to PPAR, preventing the latter's dimerization with retinoid X receptor. Essential for embryonic development., [UniProtKB, UniProtKB, UniProtKB, UniProtKB]; Involved in nucleotide metabolism via production of dUMP, the immediate precursor of thymidine nucleotides, and decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA., [UniProtKB, UniProtKB, UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [ { "id": "3.6.1.23", "url": "https://www.rhea-db.org/rhea/?query=ec:3.6.1.23", "type": "external" } ], "go_molecular_function": "GO:0000287 magnesium ion binding;GO:0004170 dUTP diphosphatase activity", "go_cellular_component": "GO:0005654 nucleoplasm", "go_biological_process": "GO:0006226 dUMP biosynthetic process;GO:0006231 dTMP biosynthetic process;GO:0046081 dUTP catabolic process", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RUW7-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RUZ3-1", "uniprot_id": [ { "id": "A0A1L1RUZ3_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RUZ3", "type": "external" } ], "mass": 46549.0, "length": 421, "protein_name": "Proteasome activator complex subunit 3", "gene_name": "PSME3", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "PSME3", "gene_names_refseq": "", "protein_names_uniprotkb": "Proteasome activator complex subunit 3; Activator of multicatalytic protease subunit 3; Proteasome activator 28 subunit gamma", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-9907900)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "Implicated in immunoproteasome assembly and required for efficient antigen processing. The PA28 activator complex enhances the generation of class I binding peptides by altering the cleavage pattern of the proteasome., [UniProtKB, UniProtKB]", "predicted_glycosites": 1, "predicted_n_glycosites": 0, "predicted_o_glycosites": 1, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 1, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0061133 endopeptidase activator activity", "go_cellular_component": "GO:0008537 proteasome activator complex;GO:0005654 nucleoplasm;GO:0005737 cytoplasm", "go_biological_process": "GO:2000045 regulation of G1/S transition of mitotic cell cycle;GO:0061136 regulation of proteasomal protein catabolic process", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RUZ3-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000001000.001.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RVA3-1", "uniprot_id": [ { "id": "A0A1L1RVA3_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RVA3", "type": "external" } ], "mass": 43724.0, "length": 393, "protein_name": "Fasciculation and elongation protein zeta 1", "gene_name": "FEZ1", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "FEZ1", "gene_names_refseq": "", "protein_names_uniprotkb": "Fasciculation and elongation protein zeta 1", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0043015 gamma-tubulin binding", "go_cellular_component": "GO:0005737 cytoplasm;GO:0005794 Golgi apparatus;GO:0005813 centrosome;GO:0030424 axon", "go_biological_process": "GO:1902902 negative regulation of autophagosome assembly", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RVA3-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RVF4-1", "uniprot_id": [ { "id": "A0A1L1RVF4_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RVF4", "type": "external" } ], "mass": 106564.0, "length": 929, "protein_name": "Aminopeptidase", "gene_name": "ERAP1", "organism": "Chicken", "refseq_name": "endoplasmic reticulum aminopeptidase 1", "refseq_ac": [ { "id": "XP_001232418", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001232418", "type": "external" } ], "gene_names_uniprotkb": "ERAP1", "gene_names_refseq": "ERAP1", "protein_names_uniprotkb": "Aminopeptidase; 3.4.11.-", "protein_names_refseq": "endoplasmic reticulum aminopeptidase 1", "tax_id": 9031, "disease": "", "pathway": " (gga:427122); (R-GGA-983170)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052572.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 16, 2011 this sequence version replaced XP_001232418.1. COMPLETENESS: full length., [RefSeq]; Aminopeptidase that plays a central role in peptide trimming, a step required for the generation of most HLA class I-binding peptides. Peptide trimming is essential to customize longer precursor peptides to fit them to the correct length required for presentation on MHC class I molecules. Strongly prefers substrates 9-16 residues long. Rapidly degrades 13-mer to a 9-mer and then stops. Preferentially hydrolyzes the residue Leu and peptides with a hydrophobic C-terminus, while it has weak activity toward peptides with charged C-terminus. May play a role in the inactivation of peptide hormones. May be involved in the regulation of blood pressure through the inactivation of angiotensin II and/or the generation of bradykinin in the kidney., [UniProtKB, UniProtKB]", "predicted_glycosites": 1, "predicted_n_glycosites": 0, "predicted_o_glycosites": 1, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 1, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [ { "id": "3.4.11.-", "url": "https://www.rhea-db.org/rhea/?query=ec:3.4.11.-", "type": "external" } ], "go_molecular_function": "GO:0008270 zinc ion binding;GO:0070006 metalloaminopeptidase activity;GO:0005138 interleukin-6 receptor binding;GO:0008237 metallopeptidase activity;GO:0004177 aminopeptidase activity", "go_cellular_component": "GO:0005576 extracellular region;GO:0005789 endoplasmic reticulum membrane;GO:0005737 cytoplasm;GO:0016020 membrane;GO:0012505 endomembrane system", "go_biological_process": "GO:0006508 proteolysis;GO:0006509 membrane protein ectodomain proteolysis;GO:0043171 peptide catabolic process;GO:0045766 positive regulation of angiogenesis;GO:0002250 adaptive immune response", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RVF4-1", "record_type": "protein", "filter_code": "0000000.0000001.010000.0001000000000000.0000000001000.001.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RVM4-1", "uniprot_id": [ { "id": "A0A1L1RVM4_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RVM4", "type": "external" } ], "mass": 9285.0, "length": 83, "protein_name": "Protein AF1q", "gene_name": "MLLT11", "organism": "Chicken", "refseq_name": "protein AF1q", "refseq_ac": [ { "id": "XP_003642733", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003642733", "type": "external" } ], "gene_names_uniprotkb": "MLLT11", "gene_names_refseq": "MLLT11", "protein_names_uniprotkb": "Protein AF1q", "protein_names_refseq": "protein AF1q", "tax_id": 9031, "disease": "", "pathway": " (gga:395847)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052556.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0005654 nucleoplasm;GO:0005813 centrosome;GO:0005829 cytosol", "go_biological_process": "GO:0043065 positive regulation of apoptotic process;GO:0045893 positive regulation of DNA-templated transcription;GO:0097191 extrinsic apoptotic signaling pathway;GO:0090200 positive regulation of release of cytochrome c from mitochondria;GO:0097193 intrinsic apoptotic signaling pathway", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RVM4-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RVT9-1", "uniprot_id": [ { "id": "A0A1L1RVT9_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RVT9", "type": "external" } ], "mass": 35307.0, "length": 314, "protein_name": "Transmembrane protein 248", "gene_name": "TMEM248", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "TMEM248", "gene_names_refseq": "", "protein_names_uniprotkb": "Transmembrane protein 248", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0016020 membrane", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RVT9-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RW10-1", "uniprot_id": [ { "id": "A0A1L1RW10_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RW10", "type": "external" } ], "mass": 79289.0, "length": 696, "protein_name": "SEC14 and spectrin domain containing 1", "gene_name": "SESTD1", "organism": "Chicken", "refseq_name": "SEC14 domain and spectrin repeat-containing protein 1 isoform X1", "refseq_ac": [ { "id": "XP_015145048", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_015145048", "type": "external" } ], "gene_names_uniprotkb": "SESTD1", "gene_names_refseq": "SESTD1", "protein_names_uniprotkb": "SEC14 and spectrin domain containing 1", "protein_names_refseq": "SEC14 domain and spectrin repeat-containing protein 1 isoform X1", "tax_id": 9031, "disease": "", "pathway": " (gga:424125)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052538.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "A0A1L1RXE1", "ec_number_list": [], "go_molecular_function": "GO:0010314 phosphatidylinositol-5-phosphate binding;GO:0005546 phosphatidylinositol-4,5-bisphosphate binding;GO:0043325 phosphatidylinositol-3,4-bisphosphate binding;GO:0080025 phosphatidylinositol-3,5-bisphosphate binding;GO:0070273 phosphatidylinositol-4-phosphate binding", "go_cellular_component": "GO:0045111 intermediate filament cytoskeleton;GO:0034704 calcium channel complex", "go_biological_process": "GO:1904878 negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RW10-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RW56-1", "uniprot_id": [ { "id": "A0A1L1RW56_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RW56", "type": "external" } ], "mass": 86901.0, "length": 760, "protein_name": "Hexosyltransferase", "gene_name": "CHPF2", "organism": "Chicken", "refseq_name": "chondroitin sulfate glucuronyltransferase", "refseq_ac": [ { "id": "XP_423717", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_423717", "type": "external" } ], "gene_names_uniprotkb": "CHPF2", "gene_names_refseq": "CHPF2", "protein_names_uniprotkb": "Hexosyltransferase; 2.4.1.-", "protein_names_refseq": "chondroitin sulfate glucuronyltransferase", "tax_id": 9031, "disease": "", "pathway": " (gga:426039); (R-GGA-2022870)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052533.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 16, 2011 this sequence version replaced XP_423717.2. COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [ { "id": "2.4.1.-", "url": "https://www.rhea-db.org/rhea/?query=ec:2.4.1.-", "type": "external" } ], "go_molecular_function": "GO:0050510 N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity;GO:0047238 glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity", "go_cellular_component": "GO:0032580 Golgi cisterna membrane", "go_biological_process": "GO:0050650 chondroitin sulfate proteoglycan biosynthetic process", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RW56-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RWA6-1", "uniprot_id": [ { "id": "A0A1L1RWA6_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RWA6", "type": "external" } ], "mass": 38226.0, "length": 359, "protein_name": "Shisa family member 8", "gene_name": "SHISA8", "organism": "Chicken", "refseq_name": "protein shisa-8", "refseq_ac": [ { "id": "XP_003640428", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003640428", "type": "external" } ], "gene_names_uniprotkb": "SHISA8", "gene_names_refseq": "SHISA8", "protein_names_uniprotkb": "Shisa family member 8", "protein_names_refseq": "protein shisa-8", "tax_id": 9031, "disease": "", "pathway": " (gga:100857803)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052532.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 4, "predicted_n_glycosites": 0, "predicted_o_glycosites": 4, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 4, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0014069 postsynaptic density;GO:0045211 postsynaptic membrane;GO:0032281 AMPA glutamate receptor complex;GO:0032591 dendritic spine membrane", "go_biological_process": "GO:0048172 regulation of short-term neuronal synaptic plasticity", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RWA6-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000001000.001.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RWB5-1", "uniprot_id": [ { "id": "A0A1L1RWB5_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RWB5", "type": "external" } ], "mass": 55126.0, "length": 477, "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "organism": "Chicken", "refseq_name": "spliceosome-associated protein CWC27 homolog", "refseq_ac": [ { "id": "XP_424748", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_424748", "type": "external" } ], "gene_names_uniprotkb": "CWC27", "gene_names_refseq": "CWC27", "protein_names_uniprotkb": "Spliceosome-associated protein CWC27 homolog; Probable inactive peptidyl-prolyl cis-trans isomerase CWC27 homolog", "protein_names_refseq": "spliceosome-associated protein CWC27 homolog", "tax_id": 9031, "disease": "", "pathway": " (gga:427159)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052572.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Nov 16, 2006 this sequence version replaced XP_424748.1. COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0003755 peptidyl-prolyl cis-trans isomerase activity", "go_cellular_component": "GO:0005634 nucleus;GO:0005654 nucleoplasm;GO:0071013 catalytic step 2 spliceosome;GO:0071005 U2-type precatalytic spliceosome", "go_biological_process": "GO:0006457 protein folding", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RWB5-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RWF6-1", "uniprot_id": [ { "id": "A0A1L1RWF6_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RWF6", "type": "external" } ], "mass": 36610.0, "length": 331, "protein_name": "Calponin", "gene_name": "CNN3", "organism": "Chicken", "refseq_name": "calponin-3", "refseq_ac": [ { "id": "NP_001341600", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001341600", "type": "external" } ], "gene_names_uniprotkb": "CNN3", "gene_names_refseq": "CNN3; calponin-3", "protein_names_uniprotkb": "Calponin", "protein_names_refseq": "calponin 3, acidic; calponin-3", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: HAEK01000413.1, HAEL01000056.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000239.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments., [RefSeq]; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity., [UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0005516 calmodulin binding;GO:0051015 actin filament binding", "go_cellular_component": "GO:0005829 cytosol;GO:0015629 actin cytoskeleton", "go_biological_process": "GO:0007015 actin filament organization;GO:0030855 epithelial cell differentiation;GO:0031032 actomyosin structure organization", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RWF6-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RWI9-1", "uniprot_id": [ { "id": "A0A1L1RWI9_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RWI9", "type": "external" } ], "mass": 40665.0, "length": 366, "protein_name": "Calcium/calmodulin-dependent protein kinase type IV", "gene_name": "CAMK4", "organism": "Chicken", "refseq_name": "calcium/calmodulin-dependent protein kinase type IV", "refseq_ac": [ { "id": "NP_001384162", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001384162", "type": "external" } ], "gene_names_uniprotkb": "CAMK4", "gene_names_refseq": "CAMK4", "protein_names_uniprotkb": "Calcium/calmodulin-dependent protein kinase type IV; 2.7.11.17; CaM kinase-GR", "protein_names_refseq": "calcium/calmodulin-dependent protein kinase type IV", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: HAEK01009982.1, HAEK01057692.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992533 [ECO:0000348] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000095.1., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [ { "id": "2.7.11.1", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.11.1", "type": "external" }, { "id": "2.7.11.25", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.11.25", "type": "external" }, { "id": "2.7.11.21", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.11.21", "type": "external" }, { "id": "2.7.12.2", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.12.2", "type": "external" }, { "id": "2.7.11.13", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.11.13", "type": "external" }, { "id": "2.7.11.17", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.11.17", "type": "external" }, { "id": "2.7.11.24", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.11.24", "type": "external" }, { "id": "2.7.11.22", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.11.22", "type": "external" }, { "id": "2.7.10.2", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.10.2", "type": "external" }, { "id": "2.7.11.12", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.11.12", "type": "external" }, { "id": "2.7.12.1", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.12.1", "type": "external" }, { "id": "2.7.11.23", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.11.23", "type": "external" }, { "id": "2.7.11.26", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.11.26", "type": "external" }, { "id": "2.7.1.150", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.1.150", "type": "external" }, { "id": "2.1.1.-", "url": "https://www.rhea-db.org/rhea/?query=ec:2.1.1.-", "type": "external" }, { "id": "2.7.11.31", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.11.31", "type": "external" }, { "id": "2.7.1.153", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.1.153", "type": "external" }, { "id": "2.7.1.137", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.1.137", "type": "external" }, { "id": "2.7.1.154", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.1.154", "type": "external" }, { "id": "2.7.11.11", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.11.11", "type": "external" } ], "go_molecular_function": "GO:0009931 calcium-dependent protein serine/threonine kinase activity;GO:0005516 calmodulin binding;GO:0005524 ATP binding;GO:0004683 calcium/calmodulin-dependent protein kinase activity", "go_cellular_component": "GO:0005634 nucleus;GO:0005654 nucleoplasm;GO:0005737 cytoplasm;GO:0005783 endoplasmic reticulum;GO:0001650 fibrillar center", "go_biological_process": "GO:0006954 inflammatory response;GO:0035556 intracellular signal transduction;GO:0045893 positive regulation of DNA-templated transcription;GO:0002250 adaptive immune response;GO:0007616 long-term memory", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RWI9-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RWJ7-1", "uniprot_id": [ { "id": "A0A1L1RWJ7_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RWJ7", "type": "external" } ], "mass": 87251.0, "length": 794, "protein_name": "Phospholipase A-2-activating protein", "gene_name": "PLAA", "organism": "Chicken", "refseq_name": "phospholipase A-2-activating protein isoform X1", "refseq_ac": [ { "id": "XP_424941", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_424941", "type": "external" } ], "gene_names_uniprotkb": "PLAA", "gene_names_refseq": "PLAA", "protein_names_uniprotkb": "Phospholipase A-2-activating protein", "protein_names_refseq": "phospholipase A-2-activating protein isoform X1", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052572.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Nov 16, 2006 this sequence version replaced XP_424941.1. COMPLETENESS: full length., [RefSeq]; Plays a role in protein ubiquitination, sorting and degradation through its association with VCP. Involved in ubiquitin-mediated membrane proteins trafficking to late endosomes in an ESCRT-dependent manner, and hence plays a role in synaptic vesicle recycling. May play a role in macroautophagy, regulating for instance the clearance of damaged lysosomes. Plays a role in cerebellar Purkinje cell development. Positively regulates cytosolic and calcium-independent phospholipase A2 activities in a tumor necrosis factor alpha (TNF-alpha)- or lipopolysaccharide (LPS)-dependent manner, and hence prostaglandin E2 biosynthesis., [UniProtKB, UniProtKB, UniProtKB, UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0016005 phospholipase A2 activator activity;GO:0043130 ubiquitin binding", "go_cellular_component": "GO:0005634 nucleus;GO:0005737 cytoplasm;GO:0045202 synapse;GO:0070062 extracellular exosome", "go_biological_process": "GO:0006629 lipid metabolic process;GO:0007399 nervous system development;GO:1903861 positive regulation of dendrite extension;GO:0010992 ubiquitin recycling;GO:0006954 inflammatory response", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RWJ7-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RWR0-1", "uniprot_id": [ { "id": "A0A1L1RWR0_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RWR0", "type": "external" } ], "mass": 16083.0, "length": 147, "protein_name": "Transthyretin", "gene_name": "LOC112531842", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "LOC112531842", "gene_names_refseq": "", "protein_names_uniprotkb": "Transthyretin", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-2453902); (R-GGA-6798695); (R-GGA-975634)", "pathway_count": 3, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "Thyroid hormone-binding protein. Probably transports thyroxine from the bloodstream to the brain., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0042802 identical protein binding;GO:0070324 thyroid hormone binding;GO:0005179 hormone activity;GO:0140313 molecular sequestering activity", "go_cellular_component": "GO:0005615 extracellular space", "go_biological_process": "GO:0001523 retinoid metabolic process;GO:0007603 phototransduction, visible light;GO:0006144 purine nucleobase metabolic process;GO:0003105 negative regulation of glomerular filtration", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RWR0-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RWS8-1", "uniprot_id": [ { "id": "A0A1L1RWS8_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RWS8", "type": "external" } ], "mass": 53711.0, "length": 478, "protein_name": "Coronin", "gene_name": "CORO1C", "organism": "Chicken", "refseq_name": "coronin-1C isoform X1", "refseq_ac": [ { "id": "XP_025011235", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_025011235", "type": "external" } ], "gene_names_uniprotkb": "CORO1C", "gene_names_refseq": "CORO1C; coronin-1C", "protein_names_uniprotkb": "Coronin", "protein_names_refseq": "coronin-1C isoform X1", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052546.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0051015 actin filament binding", "go_cellular_component": "", "go_biological_process": "GO:0007015 actin filament organization;GO:0001755 neural crest cell migration", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RWS8-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RWV1-1", "uniprot_id": [ { "id": "A0A1L1RWV1_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RWV1", "type": "external" } ], "mass": 19915.0, "length": 182, "protein_name": "SUN domain-containing protein", "gene_name": "LOC107055873", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "LOC107055873; LOC107052660", "gene_names_refseq": "", "protein_names_uniprotkb": "SUN domain-containing protein", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0043495 membrane-membrane adaptor activity", "go_cellular_component": "GO:0005635 nuclear envelope;GO:0005637 nuclear inner membrane;GO:0034993 meiotic nuclear membrane microtubule tethering complex", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RWV1-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RX26-1", "uniprot_id": [ { "id": "A0A1L1RX26_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RX26", "type": "external" } ], "mass": 49031.0, "length": 437, "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "organism": "Chicken", "refseq_name": "eukaryotic peptide chain release factor subunit 1", "refseq_ac": [ { "id": "XP_414511", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_414511", "type": "external" } ], "gene_names_uniprotkb": "ETF1", "gene_names_refseq": "ETF1", "protein_names_uniprotkb": "Eukaryotic peptide chain release factor subunit 1", "protein_names_refseq": "eukaryotic peptide chain release factor subunit 1", "tax_id": 9031, "disease": "", "pathway": " (gga:416182); (R-GGA-9629569); (R-GGA-975956); (R-GGA-975957)", "pathway_count": 4, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052544.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Nov 16, 2006 this sequence version replaced XP_414511.1. COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0003747 translation release factor activity;GO:0004045 peptidyl-tRNA hydrolase activity;GO:1990825 sequence-specific mRNA binding;GO:0016149 translation release factor activity, codon specific", "go_cellular_component": "GO:0005829 cytosol;GO:0005737 cytoplasm;GO:0018444 translation release factor complex;GO:0022626 cytosolic ribosome", "go_biological_process": "GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay;GO:0006449 regulation of translational termination;GO:0002184 cytoplasmic translational termination", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RX26-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RX69-1", "uniprot_id": [ { "id": "A0A1L1RX69_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RX69", "type": "external" } ], "mass": 17909.0, "length": 158, "protein_name": "Transmembrane protein 50B", "gene_name": "TMEM50B", "organism": "Chicken", "refseq_name": "transmembrane protein 50B", "refseq_ac": [ { "id": "XP_004934563", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_004934563", "type": "external" } ], "gene_names_uniprotkb": "TMEM50B", "gene_names_refseq": "TMEM50B", "protein_names_uniprotkb": "Transmembrane protein 50B", "protein_names_refseq": "transmembrane protein 50B", "tax_id": 9031, "disease": "", "pathway": " (gga:418503)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052532.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0005783 endoplasmic reticulum;GO:0016020 membrane", "go_biological_process": "GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RX69-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RX89-1", "uniprot_id": [ { "id": "A0A1L1RX89_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RX89", "type": "external" } ], "mass": 58017.0, "length": 528, "protein_name": "Importin subunit alpha", "gene_name": "KPNA2", "organism": "Chicken", "refseq_name": "importin subunit alpha-1", "refseq_ac": [ { "id": "NP_001006209", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001006209", "type": "external" } ], "gene_names_uniprotkb": "KPNA2", "gene_names_refseq": "KPNA2", "protein_names_uniprotkb": "Importin subunit alpha", "protein_names_refseq": "importin subunit alpha-1; importin subunit alpha-2; karyopherin alpha 2 (RAG cohort 1, importin alpha 1)", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-5693548)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: AJ719475.1, HAEL01000451.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992692, SAMN08016665 [ECO:0000348] ##Evidence-Data-END## PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JAENSK010000317.1. On Sep 23, 2021 this sequence version replaced NP_001006209.1., [RefSeq]; Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Mediator of PR-DUB complex component BAP1 nuclear import; acts redundantly with KPNA1 and Transportin-1/TNPO1., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0042826 histone deacetylase binding;GO:0008139 nuclear localization sequence binding;GO:0061608 nuclear import signal receptor activity", "go_cellular_component": "GO:0005634 nucleus;GO:0005654 nucleoplasm;GO:0005829 cytosol;GO:0031965 nuclear membrane;GO:0043657 host cell", "go_biological_process": "GO:0032481 positive regulation of type I interferon production;GO:1903902 positive regulation of viral life cycle;GO:0006607 NLS-bearing protein import into nucleus;GO:0075506 entry of viral genome into host nucleus through nuclear pore complex via importin", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RX89-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RXE7-1", "uniprot_id": [ { "id": "A0A1L1RXE7_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RXE7", "type": "external" } ], "mass": 51751.0, "length": 470, "protein_name": "28S rRNA (uridine-N(3))-methyltransferase", "gene_name": "SPOUT1", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "SPOUT1", "gene_names_refseq": "", "protein_names_uniprotkb": "28S rRNA (uridine-N(3))-methyltransferase; Centromere protein 32; Kinetochore-associated protein; SPOUT domain-containing methyltransferase 1", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N3 position of a uridine in 28S rRNA. Required for association of the centrosomes with the poles of the bipolar mitotic spindle during metaphase. Also involved in chromosome alignment. May promote centrosome maturation probably by recruiting A-kinase anchor protein AKAP9 to centrosomes in early mitosis. Binds specifically to miRNA MIR145 hairpin, regulates MIR145 expression at a postranscriptional level., [UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 2, "predicted_n_glycosites": 0, "predicted_o_glycosites": 2, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 2, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0035198 miRNA binding;GO:0070042 rRNA (uridine-N3-)-methyltransferase activity;GO:1904047 S-adenosyl-L-methionine binding;GO:0008168 methyltransferase activity", "go_cellular_component": "GO:0005737 cytoplasm;GO:0000776 kinetochore;GO:0031616 spindle pole centrosome;GO:0072686 mitotic spindle", "go_biological_process": "GO:0010608 post-transcriptional regulation of gene expression;GO:0051661 maintenance of centrosome location;GO:0035196 miRNA processing;GO:0070475 rRNA base methylation;GO:0032259 methylation", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RXE7-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000001000.001.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RXH4-1", "uniprot_id": [ { "id": "A0A1L1RXH4_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RXH4", "type": "external" } ], "mass": 39209.0, "length": 342, "protein_name": "Beta-1,4-galactosyltransferase", "gene_name": "B4GALTL", "organism": "Chicken", "refseq_name": "beta-1,4-galactosyltransferase 3", "refseq_ac": [ { "id": "XP_416564", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_416564", "type": "external" } ], "gene_names_uniprotkb": "B4GALTL", "gene_names_refseq": "B4GALTL", "protein_names_uniprotkb": "Beta-1,4-galactosyltransferase; 2.4.1.-; Beta-1,4-GalTase", "protein_names_refseq": "beta-1,4-galactosyltransferase 3", "tax_id": 9031, "disease": "", "pathway": " (gga:418342)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052532.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]; Responsible for the synthesis of complex-type N-linked oligosaccharides in many glycoproteins as well as the carbohydrate moieties of glycolipids., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0008378 galactosyltransferase activity;GO:0046872 metal ion binding", "go_cellular_component": "GO:0000139 Golgi membrane;GO:0005794 Golgi apparatus;GO:0032580 Golgi cisterna membrane", "go_biological_process": "GO:0006486 protein glycosylation;GO:0005975 carbohydrate metabolic process;GO:0070085 glycosylation", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RXH4-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RXQ1-1", "uniprot_id": [ { "id": "A0A1L1RXQ1_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RXQ1", "type": "external" } ], "mass": 67701.0, "length": 586, "protein_name": "Cyclosome subunit 8", "gene_name": "CDC23", "organism": "Chicken", "refseq_name": "cell division cycle protein 23 homolog", "refseq_ac": [ { "id": "XP_003642151", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003642151", "type": "external" } ], "gene_names_uniprotkb": "CDC23", "gene_names_refseq": "CDC23", "protein_names_uniprotkb": "Cyclosome subunit 8", "protein_names_refseq": "cell division cycle protein 23 homolog", "tax_id": 9031, "disease": "", "pathway": " (gga:771857); (R-GGA-141430); (R-GGA-174048); (R-GGA-174084); (R-GGA-174154); (R-GGA-174178); (R-GGA-174184); (R-GGA-176407); (R-GGA-176408); (R-GGA-176409); (R-GGA-176412); (R-GGA-179409); (R-GGA-2467813); (R-GGA-2559582); (R-GGA-68867); (R-GGA-69017); (R-GGA-983168)", "pathway_count": 17, "publication_count": 1, "publication_id_list": "18612635", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052544.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0005680 anaphase-promoting complex", "go_biological_process": "GO:0051301 cell division;GO:0016567 protein ubiquitination;GO:0031145 anaphase-promoting complex-dependent catabolic process;GO:0070979 protein K11-linked ubiquitination;GO:0045842 positive regulation of mitotic metaphase/anaphase transition", "synthesized_glycan_count": 0, "hit_score": 0.2, "record_id": "A0A1L1RXQ1-1", "record_type": "protein", "filter_code": "0000000.0000101.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RXX7-1", "uniprot_id": [ { "id": "A0A1L1RXX7_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RXX7", "type": "external" } ], "mass": 39513.0, "length": 342, "protein_name": "Mitochondrial genome maintenance exonuclease 1", "gene_name": "MGME1", "organism": "Chicken", "refseq_name": "mitochondrial genome maintenance exonuclease 1", "refseq_ac": [ { "id": "NP_001264447", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001264447", "type": "external" } ], "gene_names_uniprotkb": "MGME1", "gene_names_refseq": "C20orf72; C3H20ORF72; DDK1; MGME1; MTDPS11; bA504H3.4", "protein_names_uniprotkb": "Mitochondrial genome maintenance exonuclease 1; 3.1.-.-", "protein_names_refseq": "mitochondrial genome maintenance exonuclease 1", "tax_id": 9031, "disease": "", "pathway": " (gga:416719)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: HAEK01083553.1, SRR13267649.55170.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA103992290, SAMEA103992323 [ECO:0006172] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: inferred from homology ##RefSeq-Attributes-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000062.1. On Apr 11, 2013 this sequence version replaced XP_415017.2. Sequence Note: This RefSeq record was created from transcript and genomic sequence data from different strains because no single transcript from the same strain was available for the full length of the gene. The extent of this transcript is supported by transcript alignments and orthologous data., [RefSeq]; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance. Has preference for 5'-3' exonuclease activity. Necessary for maintenance of proper 7S DNA levels. Probably involved in mitochondrial DNA (mtDNA) repair., [UniProtKB, HAMAP, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "E1BWL8", "ec_number_list": [], "go_molecular_function": "GO:0045145 single-stranded DNA 5'-3' DNA exonuclease activity;GO:0008297 single-stranded DNA exodeoxyribonuclease activity", "go_cellular_component": "GO:0005739 mitochondrion", "go_biological_process": "GO:0006264 mitochondrial DNA replication;GO:0043504 mitochondrial DNA repair", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RXX7-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RY66-1", "uniprot_id": [ { "id": "A0A1L1RY66_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RY66", "type": "external" } ], "mass": 64402.0, "length": 562, "protein_name": "MKS transition zone complex subunit 1", "gene_name": "MKS1", "organism": "Chicken", "refseq_name": "Meckel syndrome type 1 protein isoform X1", "refseq_ac": [ { "id": "XP_040543453", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_040543453", "type": "external" } ], "gene_names_uniprotkb": "MKS1", "gene_names_refseq": "MKS1", "protein_names_uniprotkb": "MKS transition zone complex subunit 1", "protein_names_refseq": "Meckel syndrome type 1 protein isoform X1", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-5610787); (R-GGA-5620912)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052591.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0005654 nucleoplasm;GO:0005730 nucleolus;GO:0005737 cytoplasm;GO:0005813 centrosome;GO:0036038 MKS complex", "go_biological_process": "GO:0060271 cilium assembly;GO:0030030 cell projection organization", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RY66-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RYD1-1", "uniprot_id": [ { "id": "A0A1L1RYD1_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RYD1", "type": "external" } ], "mass": 12301.0, "length": 121, "protein_name": "Keratin", "gene_name": "LOC121107561", "organism": "Chicken", "refseq_name": "scale keratin-like", "refseq_ac": [ { "id": "NP_001264904", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001264904", "type": "external" } ], "gene_names_uniprotkb": "LOC121107561; LOC121112087", "gene_names_refseq": "LOC100859722", "protein_names_uniprotkb": "Keratin", "protein_names_refseq": "scale keratin-like", "tax_id": 9031, "disease": "", "pathway": " (gga:100859722)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000349.1. On Nov 16, 2021 this sequence version replaced NP_001264904.1. Sequence Note:., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0005200 structural constituent of cytoskeleton", "go_cellular_component": "GO:0005882 intermediate filament", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RYD1-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RYE4-1", "uniprot_id": [ { "id": "A0A1L1RYE4_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RYE4", "type": "external" } ], "mass": 17282.0, "length": 152, "protein_name": "Tandem PRG2/PRG3 pair", "gene_name": "3", "organism": "Chicken", "refseq_name": "P2X purinoceptor 3 precursor", "refseq_ac": [ { "id": "NP_001316146", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001316146", "type": "external" } ], "gene_names_uniprotkb": "3", "gene_names_refseq": "P2RX3; PGR2/3", "protein_names_uniprotkb": "Tandem PRG2/PRG3 pair", "protein_names_refseq": "P2X purinoceptor 3 precursor; proteoglycan 2, bone marrow-like; purinergic receptor P2X 3", "tax_id": 9031, "disease": "", "pathway": " (gga:423134)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: BU472863.1, CR390223.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA103992290, SAMEA103992323 [ECO:0006172] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000214.1., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0030246 carbohydrate binding", "go_cellular_component": "", "go_biological_process": "GO:0006955 immune response", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RYE4-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RYG0-1", "uniprot_id": [ { "id": "A0A1L1RYG0_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RYG0", "type": "external" } ], "mass": 32665.0, "length": 294, "protein_name": "BTB domain-containing protein", "gene_name": "KCTD12B", "organism": "Chicken", "refseq_name": "BTB/POZ domain-containing protein KCTD12", "refseq_ac": [ { "id": "XP_004940827", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_004940827", "type": "external" } ], "gene_names_uniprotkb": "KCTD12B", "gene_names_refseq": "KCTD12B", "protein_names_uniprotkb": "BTB domain-containing protein", "protein_names_refseq": "BTB/POZ domain-containing protein KCTD12", "tax_id": 9031, "disease": "", "pathway": " (gga:425504)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052535.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]; Auxiliary subunit of GABA-B receptors that determine the pharmacology and kinetics of the receptor response. Increases agonist potency and markedly alter the G-protein signaling of the receptors by accelerating onset and promoting desensitization., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0150047 G protein-coupled neurotransmitter receptor activity involved in regulation of presynaptic membrane potential", "go_cellular_component": "GO:0098982 GABA-ergic synapse;GO:0048787 presynaptic active zone membrane;GO:0043235 receptor complex;GO:0045211 postsynaptic membrane;GO:0042995 cell projection", "go_biological_process": "GO:0051260 protein homooligomerization;GO:0008277 regulation of G protein-coupled receptor signaling pathway", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RYG0-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RYN1-1", "uniprot_id": [ { "id": "A0A1L1RYN1_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RYN1", "type": "external" } ], "mass": 6318.0, "length": 55, "protein_name": "Mitochondrial import receptor subunit TOM7 homolog", "gene_name": "TOMM7", "organism": "Chicken", "refseq_name": "mitochondrial import receptor subunit TOM7 homolog", "refseq_ac": [ { "id": "NP_001186546", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001186546", "type": "external" } ], "gene_names_uniprotkb": "TOMM7", "gene_names_refseq": "TOMM7", "protein_names_uniprotkb": "Mitochondrial import receptor subunit TOM7 homolog; Translocase of outer membrane 7 kDa subunit homolog", "protein_names_refseq": "mitochondrial import receptor subunit TOM7 homolog; translocase of outer mitochondrial membrane 7 homolog", "tax_id": 9031, "disease": "", "pathway": " (gga:420610); (R-GGA-5205685)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: HAEK01137797.1, HAEK01110276.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992393, SAMEA103992432 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: inferred from homology ##RefSeq-Attributes-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000036.1. On Dec 11, 2010 this sequence version replaced XP_429775.2., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0005742 mitochondrial outer membrane translocase complex", "go_biological_process": "GO:0030150 protein import into mitochondrial matrix;GO:1903955 positive regulation of protein targeting to mitochondrion", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RYN1-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RYS1-1", "uniprot_id": [ { "id": "A0A1L1RYS1_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RYS1", "type": "external" } ], "mass": 33795.0, "length": 304, "protein_name": "Programmed cell death 1", "gene_name": "PDCD1", "organism": "Chicken", "refseq_name": "programmed cell death protein 1", "refseq_ac": [ { "id": "XP_422723", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_422723", "type": "external" } ], "gene_names_uniprotkb": "PDCD1", "gene_names_refseq": "PDCD1", "protein_names_uniprotkb": "Programmed cell death 1", "protein_names_refseq": "programmed cell death protein 1", "tax_id": 9031, "disease": "", "pathway": " (gga:424913); (R-GGA-389948); (R-GGA-9931295)", "pathway_count": 3, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052540.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 1, 2022 this sequence version replaced XP_422723.3. COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0009897 external side of plasma membrane", "go_biological_process": "GO:0050776 regulation of immune response;GO:0050777 negative regulation of immune response;GO:0070234 positive regulation of T cell apoptotic process", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RYS1-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RZ25-1", "uniprot_id": [ { "id": "A0A1L1RZ25_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RZ25", "type": "external" } ], "mass": 26691.0, "length": 238, "protein_name": "Leucine-rich repeat-containing protein 57", "gene_name": "LRRC57", "organism": "Chicken", "refseq_name": "leucine-rich repeat-containing protein 57", "refseq_ac": [ { "id": "NP_001186597", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001186597", "type": "external" } ], "gene_names_uniprotkb": "LRRC57", "gene_names_refseq": "LRRC57", "protein_names_uniprotkb": "Leucine-rich repeat-containing protein 57", "protein_names_refseq": "leucine-rich repeat-containing protein 57", "tax_id": 9031, "disease": "", "pathway": " (gga:423236)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: HAEL01006093.1, HAEL01013431.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA103992290, SAMEA103992323 [ECO:0006172] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000214.1. On Dec 11, 2010 this sequence version replaced XP_421160.1., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0005737 cytoplasm", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RZ25-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RZ57-1", "uniprot_id": [ { "id": "A0A1L1RZ57_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RZ57", "type": "external" } ], "mass": 77153.0, "length": 684, "protein_name": "Kyphoscoliosis peptidase", "gene_name": "KY", "organism": "Chicken", "refseq_name": "kyphoscoliosis peptidase isoform X1", "refseq_ac": [ { "id": "XP_025009183", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_025009183", "type": "external" } ], "gene_names_uniprotkb": "KY", "gene_names_refseq": "KY", "protein_names_uniprotkb": "Kyphoscoliosis peptidase", "protein_names_refseq": "kyphoscoliosis peptidase isoform X1", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052540.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0005737 cytoplasm", "go_biological_process": "GO:0007528 neuromuscular junction development;GO:0007517 muscle organ development", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RZ57-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RZK1-1", "uniprot_id": [ { "id": "A0A1L1RZK1_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RZK1", "type": "external" } ], "mass": 20553.0, "length": 180, "protein_name": "Lactoylglutathione lyase", "gene_name": "GLO1", "organism": "Chicken", "refseq_name": "lactoylglutathione lyase isoform X1", "refseq_ac": [ { "id": "XP_419481", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_419481", "type": "external" } ], "gene_names_uniprotkb": "GLO1", "gene_names_refseq": "GLO1", "protein_names_uniprotkb": "Lactoylglutathione lyase; 4.4.1.5; Glyoxalase I", "protein_names_refseq": "lactoylglutathione lyase isoform X1", "tax_id": 9031, "disease": "", "pathway": " (gga:421428); (R-GGA-70268)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052534.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione. Involved in the regulation of TNF-induced transcriptional activity of NF-kappa-B. Required for normal osteoclastogenesis., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [ { "id": "4.4.1.5", "url": "https://www.rhea-db.org/rhea/?query=ec:4.4.1.5", "type": "external" } ], "go_molecular_function": "GO:0008270 zinc ion binding;GO:0004462 lactoylglutathione lyase activity", "go_cellular_component": "GO:0005654 nucleoplasm;GO:0005829 cytosol;GO:0005886 plasma membrane", "go_biological_process": "GO:0030316 osteoclast differentiation;GO:0006357 regulation of transcription by RNA polymerase II;GO:0043066 negative regulation of apoptotic process", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RZK1-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RZM2-1", "uniprot_id": [ { "id": "A0A1L1RZM2_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RZM2", "type": "external" } ], "mass": 123392.0, "length": 1080, "protein_name": "Dishevelled associated activator of morphosis 1", "gene_name": "DAAM1", "organism": "Chicken", "refseq_name": "disheveled-associated activator of morphogenesis 1", "refseq_ac": [ { "id": "NP_001309297", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001309297", "type": "external" } ], "gene_names_uniprotkb": "DAAM1", "gene_names_refseq": "DAAM1", "protein_names_uniprotkb": "Dishevelled associated activator of morphosis 1", "protein_names_refseq": "disheveled-associated activator of morphogenesis 1", "tax_id": 9031, "disease": "", "pathway": " (gga:423532); (R-GGA-8980692); (R-GGA-9013026); (R-GGA-9013106)", "pathway_count": 4, "publication_count": 1, "publication_id_list": "15464228", "class_list": "", "function": "##Evidence-Data-START## CDS exon combination :: SRR13267649.186281.1 [ECO:0000331] RNAseq introns :: mixed sample support SAMEA103992290, SAMEA103992323 [ECO:0006172] ##Evidence-Data-END## ##RefSeq-Attributes-START## inferred exon combination :: based on alignments, homology ##RefSeq-Attributes-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000215.1. On Apr 12, 2016 this sequence version replaced XP_015142988.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments., [RefSeq]; Involved in pivotal steps in neuronal cell differentiation and movement [Daam1], [RefSeq, PubMed]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0003779 actin binding;GO:0042802 identical protein binding;GO:0031267 small GTPase binding", "go_cellular_component": "GO:0005829 cytosol;GO:0005886 plasma membrane;GO:0031514 motile cilium;GO:0048471 perinuclear region of cytoplasm;GO:0001725 stress fiber", "go_biological_process": "GO:0030036 actin cytoskeleton organization;GO:0016055 Wnt signaling pathway", "synthesized_glycan_count": 0, "hit_score": 0.2, "record_id": "A0A1L1RZM2-1", "record_type": "protein", "filter_code": "0000000.0000101.010000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RZN8-1", "uniprot_id": [ { "id": "A0A1L1RZN8_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RZN8", "type": "external" } ], "mass": 12834.0, "length": 119, "protein_name": "C-X-C motif chemokine ligand 13", "gene_name": "CXCL13", "organism": "Chicken", "refseq_name": "C-X-C motif chemokine 13 precursor", "refseq_ac": [ { "id": "NP_001335586", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335586", "type": "external" } ], "gene_names_uniprotkb": "CXCL13", "gene_names_refseq": "CXCL13", "protein_names_uniprotkb": "C-X-C motif chemokine ligand 13", "protein_names_refseq": "C-X-C motif chemokine 13 precursor", "tax_id": 9031, "disease": "", "pathway": " (gga:109648311); (R-GGA-114608); (R-GGA-375276); (R-GGA-380108); (R-GGA-418594)", "pathway_count": 5, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: BX278662.2, AM071831.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000073.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0008009 chemokine activity;GO:0045236 CXCR chemokine receptor binding", "go_cellular_component": "GO:0005615 extracellular space", "go_biological_process": "GO:0006954 inflammatory response;GO:0061844 antimicrobial humoral immune response mediated by antimicrobial peptide;GO:0071222 cellular response to lipopolysaccharide;GO:0030593 neutrophil chemotaxis", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RZN8-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RZP2-1", "uniprot_id": [ { "id": "A0A1L1RZP2_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RZP2", "type": "external" } ], "mass": 42505.0, "length": 377, "protein_name": "OTU domain-containing protein 3", "gene_name": "OTUD3", "organism": "Chicken", "refseq_name": "OTU domain-containing protein 3", "refseq_ac": [ { "id": "XP_040545150", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_040545150", "type": "external" } ], "gene_names_uniprotkb": "OTUD3", "gene_names_refseq": "OTUD3", "protein_names_uniprotkb": "OTU domain-containing protein 3; 3.4.19.12", "protein_names_refseq": "OTU domain-containing protein 3", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-5689896); (R-GGA-8948751)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052593.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]; Deubiquitinating enzyme that hydrolyzes 'Lys-6'- and 'Lys-11'-linked polyubiquitin. Also hydrolyzes heterotypic (mixed and branched) and homotypic chains. Important regulator of energy metabolism. Glucose and fatty acids trigger its nuclear translocation by CBP-dependent acetylation. In the nucleus, deubiquitinates and stabilizes the nuclear receptor PPARD regulating the expression of various genes involved in glucose and lipid metabolism and oxidative phosphorylation. Also acts as a negative regulator of the ribosome quality control (RQC) by mediating deubiquitination of 40S ribosomal proteins RPS10/eS10 and RPS20/uS10, thereby antagonizing ZNF598-mediated 40S ubiquitination., [UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [ { "id": "3.4.19.12", "url": "https://www.rhea-db.org/rhea/?query=ec:3.4.19.12", "type": "external" }, { "id": "3.1.3.67", "url": "https://www.rhea-db.org/rhea/?query=ec:3.1.3.67", "type": "external" }, { "id": "3.1.3.16", "url": "https://www.rhea-db.org/rhea/?query=ec:3.1.3.16", "type": "external" }, { "id": "3.1.3.48", "url": "https://www.rhea-db.org/rhea/?query=ec:3.1.3.48", "type": "external" } ], "go_molecular_function": "GO:0004843 cysteine-type deubiquitinase activity", "go_cellular_component": "GO:0005634 nucleus;GO:0005737 cytoplasm", "go_biological_process": "GO:0006508 proteolysis;GO:0050821 protein stabilization;GO:0031669 cellular response to nutrient levels;GO:0051898 negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction;GO:0071108 protein K48-linked deubiquitination", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RZP2-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RZQ0-1", "uniprot_id": [ { "id": "A0A1L1RZQ0_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RZQ0", "type": "external" } ], "mass": 9907.0, "length": 98, "protein_name": "Keratin", "gene_name": "LOC121110033", "organism": "Chicken", "refseq_name": "feather keratin 1-like", "refseq_ac": [ { "id": "XP_040521197", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_040521197", "type": "external" } ], "gene_names_uniprotkb": "LOC121110033", "gene_names_refseq": "LOC121110033", "protein_names_uniprotkb": "Keratin", "protein_names_refseq": "feather keratin 1-like", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052574.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 1, "predicted_n_glycosites": 0, "predicted_o_glycosites": 1, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 1, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0005200 structural constituent of cytoskeleton", "go_cellular_component": "GO:0005882 intermediate filament", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RZQ0-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000001000.001.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RZR2-1", "uniprot_id": [ { "id": "A0A1L1RZR2_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RZR2", "type": "external" } ], "mass": 48470.0, "length": 433, "protein_name": "DnaJ homolog subfamily A member 1", "gene_name": "DNAJA1", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "DNAJA1", "gene_names_refseq": "", "protein_names_uniprotkb": "DnaJ homolog subfamily A member 1", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-3371497); (R-GGA-9841251)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0055131 C3HC4-type RING finger domain binding;GO:0005524 ATP binding;GO:0008270 zinc ion binding;GO:0050750 low-density lipoprotein particle receptor binding;GO:0051082 unfolded protein binding", "go_cellular_component": "GO:0005634 nucleus;GO:0005737 cytoplasm;GO:0005739 mitochondrion;GO:0005783 endoplasmic reticulum;GO:0005829 cytosol", "go_biological_process": "GO:0051223 regulation of protein transport;GO:0070585 protein localization to mitochondrion;GO:1903748 negative regulation of establishment of protein localization to mitochondrion;GO:1905259 negative regulation of nitrosative stress-induced intrinsic apoptotic signaling pathway;GO:0007283 spermatogenesis", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RZR2-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RZT1-1", "uniprot_id": [ { "id": "A0A1L1RZT1_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RZT1", "type": "external" } ], "mass": 47012.0, "length": 415, "protein_name": "Plasmalemma vesicle associated protein", "gene_name": "PLVAP", "organism": "Chicken", "refseq_name": "plasmalemma vesicle-associated protein", "refseq_ac": [ { "id": "XP_003643535", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003643535", "type": "external" } ], "gene_names_uniprotkb": "PLVAP", "gene_names_refseq": "PLVAP", "protein_names_uniprotkb": "Plasmalemma vesicle associated protein", "protein_names_refseq": "plasmalemma vesicle-associated protein", "tax_id": 9031, "disease": "", "pathway": " (gga:100857417)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052559.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0016020 membrane", "go_biological_process": "GO:0043114 regulation of vascular permeability;GO:0002693 positive regulation of cellular extravasation", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RZT1-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RZU1-1", "uniprot_id": [ { "id": "A0A1L1RZU1_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RZU1", "type": "external" } ], "mass": 11700.0, "length": 102, "protein_name": "RNA polymerase I and III subunit D", "gene_name": "POLR1D", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "POLR1D", "gene_names_refseq": "", "protein_names_uniprotkb": "RNA polymerase I and III subunit D", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0046983 protein dimerization activity", "go_cellular_component": "GO:0005736 RNA polymerase I complex;GO:0005666 RNA polymerase III complex", "go_biological_process": "GO:0006362 transcription elongation by RNA polymerase I;GO:0006383 transcription by RNA polymerase III", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RZU1-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1RZU7-1", "uniprot_id": [ { "id": "A0A1L1RZU7_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1RZU7", "type": "external" } ], "mass": 32437.0, "length": 294, "protein_name": "Exosome complex component RRP4", "gene_name": "EXOSC2", "organism": "Chicken", "refseq_name": "exosome complex component RRP4", "refseq_ac": [ { "id": "NP_001012816", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001012816", "type": "external" } ], "gene_names_uniprotkb": "EXOSC2", "gene_names_refseq": "EXOSC2", "protein_names_uniprotkb": "Exosome complex component RRP4; Exosome component 2; Ribosomal RNA-processing protein 4", "protein_names_refseq": "exosome complex component RRP4; homolog of Yeast RRP4 (ribosomal RNA processing 4), 3'-5'-exorib", "tax_id": 9031, "disease": "", "pathway": " (gga:417182); (R-GGA-429958); (R-GGA-450385); (R-GGA-6791226); (R-GGA-9930044)", "pathway_count": 5, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: CR352497.1, HAEL01000209.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000308.1. On Jul 25, 2007 this sequence version replaced NP_001012816.1. Sequence Note: This RefSeq record was created from transcript data from multiple strains because no single transcript from the same strain was available from the full length of the gene., [RefSeq]", "predicted_glycosites": 1, "predicted_n_glycosites": 0, "predicted_o_glycosites": 1, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 1, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0003723 RNA binding", "go_cellular_component": "GO:0005654 nucleoplasm;GO:0005730 nucleolus;GO:0005829 cytosol;GO:0000176 nuclear exosome (RNase complex);GO:0000177 cytoplasmic exosome (RNase complex)", "go_biological_process": "GO:0030307 positive regulation of cell growth;GO:0000956 nuclear-transcribed mRNA catabolic process;GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA);GO:0034475 U4 snRNA 3'-end processing;GO:0071034 CUT catabolic process", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1RZU7-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000001000.001.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1S083-1", "uniprot_id": [ { "id": "A0A1L1S083_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1S083", "type": "external" } ], "mass": 13197.0, "length": 117, "protein_name": "Uncharacterized protein", "gene_name": "", "organism": "Chicken", "refseq_name": "", "refseq_ac": [], "gene_names_uniprotkb": "", "gene_names_refseq": "", "protein_names_uniprotkb": "Uncharacterized protein", "protein_names_refseq": "", "tax_id": 9031, "disease": "", "pathway": "", "pathway_count": 0, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1S083-1", "record_type": "protein", "filter_code": "0000000.0000000.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1S0C5-1", "uniprot_id": [ { "id": "A0A1L1S0C5_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1S0C5", "type": "external" } ], "mass": 58092.0, "length": 514, "protein_name": "Sorting nexin-1", "gene_name": "SNX1", "organism": "Chicken", "refseq_name": "sorting nexin-1 isoform X2", "refseq_ac": [ { "id": "XP_425052", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_425052", "type": "external" } ], "gene_names_uniprotkb": "SNX1", "gene_names_refseq": "SNX1", "protein_names_uniprotkb": "Sorting nexin-1", "protein_names_refseq": "sorting nexin-1 isoform X2", "tax_id": 9031, "disease": "", "pathway": " (gga:427480)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052541.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Nov 16, 2006 this sequence version replaced XP_425052.1. COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0005158 insulin receptor binding;GO:0042803 protein homodimerization activity;GO:0046982 protein heterodimerization activity;GO:0005154 epidermal growth factor receptor binding;GO:0035091 phosphatidylinositol binding", "go_cellular_component": "GO:0005768 endosome;GO:0005794 Golgi apparatus;GO:0005829 cytosol;GO:0030027 lamellipodium;GO:0005764 lysosome", "go_biological_process": "GO:0006886 intracellular protein transport;GO:0031623 receptor internalization;GO:0072673 lamellipodium morphogenesis;GO:0034498 early endosome to Golgi transport", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1S0C5-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1S0C9-1", "uniprot_id": [ { "id": "A0A1L1S0C9_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1S0C9", "type": "external" } ], "mass": 30193.0, "length": 276, "protein_name": "Tubulin polyglutamylase complex subunit 1", "gene_name": "TPGS1", "organism": "Chicken", "refseq_name": "tubulin polyglutamylase complex subunit 1", "refseq_ac": [ { "id": "XP_003642907", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003642907", "type": "external" } ], "gene_names_uniprotkb": "TPGS1", "gene_names_refseq": "TPGS1", "protein_names_uniprotkb": "Tubulin polyglutamylase complex subunit 1", "protein_names_refseq": "tubulin polyglutamylase complex subunit 1", "tax_id": 9031, "disease": "", "pathway": " (gga:100857535)", "pathway_count": 1, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052559.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 2, "predicted_n_glycosites": 0, "predicted_o_glycosites": 2, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 2, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0070740 tubulin-glutamic acid ligase activity;GO:0008017 microtubule binding", "go_cellular_component": "GO:0005813 centrosome;GO:0045202 synapse;GO:0005815 microtubule organizing center", "go_biological_process": "GO:0030534 adult behavior;GO:0007268 chemical synaptic transmission;GO:0007288 sperm axoneme assembly;GO:0051648 vesicle localization", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1S0C9-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000001000.001.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1S0V0-1", "uniprot_id": [ { "id": "A0A1L1S0V0_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1S0V0", "type": "external" } ], "mass": 21128.0, "length": 195, "protein_name": "Ovomucoid", "gene_name": "LOC101749502", "organism": "Chicken", "refseq_name": "double-headed protease inhibitor, submandibular gland", "refseq_ac": [ { "id": "XP_004944966", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_004944966", "type": "external" } ], "gene_names_uniprotkb": "LOC101749502", "gene_names_refseq": "LOC101749502", "protein_names_uniprotkb": "Ovomucoid", "protein_names_refseq": "double-headed protease inhibitor, submandibular gland", "tax_id": 9031, "disease": "", "pathway": " (gga:101749502); (R-GGA-6809371)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052544.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0004867 serine-type endopeptidase inhibitor activity", "go_cellular_component": "GO:0005615 extracellular space", "go_biological_process": "", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1S0V0-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1S0X5-1", "uniprot_id": [ { "id": "A0A1L1S0X5_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1S0X5", "type": "external" } ], "mass": 13306.0, "length": 117, "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "organism": "Chicken", "refseq_name": "large ribosomal subunit protein eL34", "refseq_ac": [ { "id": "NP_001268429", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001268429", "type": "external" } ], "gene_names_uniprotkb": "RPL34", "gene_names_refseq": "RPL34", "protein_names_uniprotkb": "Large ribosomal subunit protein eL34; 60S ribosomal protein L34", "protein_names_refseq": "large ribosomal subunit protein eL34", "tax_id": 9031, "disease": "", "pathway": " (gga:422526); (R-GGA-1799339); (R-GGA-72706); (R-GGA-975956); (R-GGA-975957); (R-GGA-9954709); (R-GGA-9954714); (R-GGA-9954716)", "pathway_count": 8, "publication_count": 1, "publication_id_list": "38395592", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: CF251027.1, DR430813.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992415, SAMEA103992432 [ECO:0000348] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000073.1. On or before Jul 31, 2013 this sequence version replaced XP_003643704.1, XP_004941101.1, XP_420489.3., [RefSeq]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "A0A1D5NTR6", "ec_number_list": [], "go_molecular_function": "GO:0003735 structural constituent of ribosome", "go_cellular_component": "GO:0022625 cytosolic large ribosomal subunit;GO:0005840 ribosome;GO:1990904 ribonucleoprotein complex", "go_biological_process": "GO:0006412 translation", "synthesized_glycan_count": 0, "hit_score": 0.2, "record_id": "A0A1L1S0X5-1", "record_type": "protein", "filter_code": "0000000.0000101.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1S0X6-1", "uniprot_id": [ { "id": "A0A1L1S0X6_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1S0X6", "type": "external" } ], "mass": 28877.0, "length": 266, "protein_name": "NECAP endocytosis associated 2", "gene_name": "NECAP2", "organism": "Chicken", "refseq_name": "adaptin ear-binding coat-associated protein 2", "refseq_ac": [ { "id": "NP_001012855", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001012855", "type": "external" } ], "gene_names_uniprotkb": "NECAP2", "gene_names_refseq": "NECAP2", "protein_names_uniprotkb": "NECAP endocytosis associated 2", "protein_names_refseq": "adaptin ear-binding coat-associated protein 2", "tax_id": 9031, "disease": "", "pathway": " (R-GGA-8856825); (R-GGA-8856828)", "pathway_count": 2, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: HAEL01001263.1, HAEK01010753.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JAENSK010000329.1. On Sep 23, 2021 this sequence version replaced NP_001012855.1., [RefSeq]; Involved in endocytosis., [UniProtKB, UniProtKB, UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 1, "predicted_n_glycosites": 0, "predicted_o_glycosites": 1, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 1, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "", "go_cellular_component": "GO:0030665 clathrin-coated vesicle membrane;GO:0030125 clathrin vesicle coat", "go_biological_process": "GO:0006897 endocytosis;GO:0015031 protein transport;GO:0016192 vesicle-mediated transport", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1S0X6-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000001000.001.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1S0Y9-1", "uniprot_id": [ { "id": "A0A1L1S0Y9_CHICK", "url": "https://www.uniprot.org/uniprot/A0A1L1S0Y9", "type": "external" } ], "mass": 9645.0, "length": 79, "protein_name": "Cyclin-dependent kinases regulatory subunit", "gene_name": "CKS1B", "organism": "Chicken", "refseq_name": "cyclin-dependent kinases regulatory subunit 1", "refseq_ac": [ { "id": "NP_001106277", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001106277", "type": "external" } ], "gene_names_uniprotkb": "CKS1B", "gene_names_refseq": "CKS1B", "protein_names_uniprotkb": "Cyclin-dependent kinases regulatory subunit", "protein_names_refseq": "cyclin-dependent kinases regulatory subunit 1", "tax_id": 9031, "disease": "", "pathway": " (gga:100134845); (R-GGA-187577); (R-GGA-69231)", "pathway_count": 3, "publication_count": 0, "publication_id_list": "", "class_list": "", "function": "##Evidence-Data-START## Transcript exon combination :: CO635692.1, CN227768.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JAENSK010000351.1., [RefSeq]; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function., [UniProtKB, UniProtKB, UniProtKB]", "predicted_glycosites": 0, "predicted_n_glycosites": 0, "predicted_o_glycosites": 0, "predicted_c_glycosites": 0, "predicted_s_glycosites": 0, "mined_glycosites": 0, "mined_n_glycosites": 0, "mined_o_glycosites": 0, "mined_c_glycosites": 0, "mined_s_glycosites": 0, "reported_n_glycosites": 0, "reported_o_glycosites": 0, "reported_c_glycosites": 0, "reported_s_glycosites": 0, "reported_n_glycosites_with_glycan": 0, "reported_o_glycosites_with_glycan": 0, "reported_c_glycosites_with_glycan": 0, "reported_s_glycosites_with_glycan": 0, "total_reported_n_glycosites": 0, "total_reported_o_glycosites": 0, "total_reported_c_glycosites": 0, "total_reported_s_glycosites": 0, "total_n_glycosites": 0, "total_o_glycosites": 0, "total_c_glycosites": 0, "total_s_glycosites": 0, "reported_fully_resolved_glycans": 0, "reported_phosphosites": 0, "reported_mutagensis": 0, "reported_glycation": 0, "reported_snv": 0, "reported_interactions": 0, "missing_score": 10000, "biomarker_type": "", "glycan_count": 0, "disease_count": 0, "glyco_site_count": 0, "binding_glycan_count": 0, "secondary_ac_list": "", "ec_number_list": [], "go_molecular_function": "GO:0019901 protein kinase binding;GO:0042393 histone binding;GO:0043130 ubiquitin binding;GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity", "go_cellular_component": "GO:0019005 SCF ubiquitin ligase complex;GO:0000307 cyclin-dependent protein kinase holoenzyme complex", "go_biological_process": "GO:0051301 cell division;GO:0007346 regulation of mitotic cell cycle", "synthesized_glycan_count": 0, "hit_score": 0.1, "record_id": "A0A1L1S0Y9-1", "record_type": "protein", "filter_code": "0000000.0000001.100000.0001000000000000.0000000000000.000.000", "kg_view_protein": true }, { "uniprot_canonical_ac": "A0A1L1SQ02-1", "uniprot_id": [ { "id": "A0A1L1SQ02_MOUSE", "url": "https://www.uniprot.org/uniprot/A0A1L1SQ02", "type": "external" } ], "mass": 34749.0, "length": 309, "protein_name": "Olfactory receptor", "gene_name": "Or4x13", "organism": "Mouse", "refseq_name": "olfactory receptor 1274", "refseq_ac": [ { "id": "NP_666375", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_666375", "type": "external" } ], "gene_names_uniprotkb": "Or4x13; Olfr1274-ps; Olfr1274", "gene_names_refseq": "GA_x5J8B7W2BV0-3116-4045; MOR228-4; MOR228-5; Olfr1274-ps; Olfr1274; Or4x13", "protein_names_uniprotkb": "Olfactory receptor", "protein_names_refseq": "GA_x6K02T2Q125-51676372-51677301; olfactory receptor 1274, pseudogene; olfactory receptor 1274; olfactory receptor GA_x5J8B7W2BV0-3116-4045; olfactory receptor MOR228-4", "tax_id": 10090, "disease": "", "pathway": " (mmu:258330)", "pathway_count": 1, "publication_count": 1, "publication_id_list": "21750661", "class_list": "", "function": "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. 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The enzyme is specific for guanine, and N7 methylation must precede N2 methylation. Hypermethylation of the m7G cap of U snRNAs leads to their concentration in nuclear foci, their colocalization with coilin and the formation of canonical Cajal bodies (CBs). 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