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"PubMed", "id": "37268159", "url": "https://glygen.org/publication/PubMed/37268159" }, { "database": "TableMaker", "id": "TP6640575", "url": "https://glygen.ccrc.uga.edu/tablemaker/data/TP6640575" } ], "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "length": 3333, "chemical_mass": 366619.0 } ] }, { "start_pos": "416", "site_seq": "IDSTGnVTNELR", "site_lbl": "Asn416", "residue": "Asn", "glycoprotein": [ { "uniprot_canonical_ac": "O75882-1", "start_pos": 416, "end_pos": 416, "residue": "Asn", "evidence": [ { "database": "PubMed", "id": "37268159", "url": "https://glygen.org/publication/PubMed/37268159" }, { "database": "TableMaker", "id": "TP6640575", "url": "https://glygen.ccrc.uga.edu/tablemaker/data/TP6640575" } ], "protein_name": "Attractin", "gene_name": "ATRN", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "length": 1429, "chemical_mass": 158537.0 } ] }, { 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}, { "start_pos": "428", "site_seq": "", "site_lbl": "N428", "residue": "", "snv": [ { "weight": 100, "sequence_org": "N", "sequence_mut": "S", "comment": "Germline mutation passed 1 out of 1 filters: n-glyco-sequon-loss (NES->SES).", "chr_id": "20", "chr_pos": "3560741", "evidence": [ { "id": "rs756987532", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs756987532" }, { "id": "rs756987532", "database": "ExAC", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs756987532" }, { "id": "rs756987532", "database": "TOPMed", "url": "https://www.ncbi.nlm.nih.gov/snp/rs756987532#frequency_tab" }, { "id": "rs756987532", "database": "gnomAD", "url": "http://gnomad.broadinstitute.org/awesome?query=rs756987532" } ] } ], "glycoprotein": [ { "uniprot_canonical_ac": "O75882-1", "start_pos": 428, "end_pos": 428, "residue": "Asn", "evidence": [ { "database": "PubMed", "id": "32125861", "url": "https://glygen.org/publication/PubMed/32125861" }, { "database": "GlyConnect", "id": "679", "url": "https://glyconnect.expasy.org/browser/proteins/679" } ], "protein_name": "Attractin", "gene_name": "ATRN", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "length": 1429, "chemical_mass": 158537.0 } ] }, { "start_pos": "197", "site_seq": "N", "site_lbl": "Asn197", "residue": "Asn", "glycoprotein": [ { "uniprot_canonical_ac": "P50897-1", "start_pos": 197, "end_pos": 197, "residue": "Asn", "evidence": [ { "database": "PubMed", "id": "29741879", "url": "https://glygen.org/publication/PubMed/29741879" }, { "database": "GlyConnect", "id": "1592", "url": "https://glyconnect.expasy.org/browser/proteins/1592" } ], "protein_name": "Palmitoyl-protein thioesterase 1", "gene_name": "PPT1", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "length": 306, "chemical_mass": 34193.0 } ] }, { "start_pos": "197", "site_seq": "EDVYRnHSIFLADINQER", "site_lbl": "Asn197", "residue": "Asn", "glycoprotein": [ { "uniprot_canonical_ac": "P50897-1", "start_pos": 197, "end_pos": 197, "residue": "Asn", "evidence": [ { "database": "PubMed", "id": "29741879", "url": "https://glygen.org/publication/PubMed/29741879" }, { "database": "GlyConnect", "id": "1592", "url": "https://glyconnect.expasy.org/browser/proteins/1592" } ], "protein_name": "Palmitoyl-protein thioesterase 1", "gene_name": "PPT1", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "length": 306, "chemical_mass": 34193.0 } ] }, { "start_pos": "197", "site_seq": "nHSIFLADINQER", "site_lbl": "Asn197", "residue": "Asn", "glycoprotein": [ { "uniprot_canonical_ac": "P50897-1", "start_pos": 197, "end_pos": 197, "residue": "Asn", "evidence": [ { "database": "PubMed", "id": "29741879", "url": "https://glygen.org/publication/PubMed/29741879" }, { "database": "GlyConnect", "id": "1592", "url": "https://glyconnect.expasy.org/browser/proteins/1592" } ], "protein_name": "Palmitoyl-protein thioesterase 1", "gene_name": "PPT1", 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"https://glygen.org/publication/PubMed/37268159" }, { "database": "TableMaker", "id": "TP6640575", "url": "https://glygen.ccrc.uga.edu/tablemaker/data/TP6640575" }, { "database": "PubMed", "id": "29741879", "url": "https://glygen.org/publication/PubMed/29741879" }, { "database": "GlyConnect", "id": "1592", "url": "https://glyconnect.expasy.org/browser/proteins/1592" } ], "protein_name": "Palmitoyl-protein thioesterase 1", "gene_name": "PPT1", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "length": 306, "chemical_mass": 34193.0 } ] }, { "start_pos": "212", "site_seq": "GInESYKK", "site_lbl": "Asn212", "residue": "Asn", "glycoprotein": [ { "uniprot_canonical_ac": "P50897-1", "start_pos": 212, "end_pos": 212, "residue": "Asn", "evidence": [ { "database": "PubMed", "id": "37268159", "url": "https://glygen.org/publication/PubMed/37268159" }, { "database": "TableMaker", "id": "TP6640575", "url": "https://glygen.ccrc.uga.edu/tablemaker/data/TP6640575" }, { 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"tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "length": 456, "chemical_mass": 51848.0 } ] }, { "start_pos": "55", "site_seq": "N", "site_lbl": "Asn55", "residue": "Asn", "glycoprotein": [ { "uniprot_canonical_ac": "P20934-1", "start_pos": 55, "end_pos": 55, "residue": "Asn", "evidence": [ { "database": "PubMed", "id": "30899004", "url": "https://glygen.org/publication/PubMed/30899004" }, { "database": "GlyConnect", "id": "2626", "url": "https://glyconnect.expasy.org/browser/proteins/2626" } ], "protein_name": "Protein EVI2A", "gene_name": "Evi2a", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "length": 223, "chemical_mass": 24087.0 } ] }, { "start_pos": "55", "site_seq": "HPSDNNTNLVTPAVGHK", "site_lbl": "Asn55", "residue": "Asn", "glycoprotein": [ { "uniprot_canonical_ac": "P20934-1", "start_pos": 55, "end_pos": 55, "residue": "Asn", "evidence": [ { "database": "PubMed", "id": "30899004", "url": 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