{ "glytoucan_ac": "G07248LS", "number_monosaccharides": 13, "number_monosaccharides_suffix": "", "mass": 2530.89, "mass_pme": 3147.58, "tool_support": { "sandbox": "yes", "pdb": "yes", "gnome": "yes", "gnome_glygen": "yes", "gnome_glygen_nglycans": "yes", "gnome_glygen_oglycans": "no", "gnome_glycotree_nglycans": "yes", "gnome_glycotree_oglycans": "no" }, "fully_determined": "yes", "missing_score": 0, "glycan_type": "Saccharide", "iupac": "alpha-D-Neup5Ac-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Neup5Ac-(2->3)[beta-D-Galp-(1->4)]-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc-(1->", "iupac_compact": "NeuAca2-3Galb1-4GlcNAcb1-2Mana1-3(Fuca1-3(NeuAca2-3(Galb1-4)Galb1-4)GlcNAcb1-2Mana1-6)Manb1-4GlcNAcb1-4GlcNAcb", "iupac_condensed": "Neu5Ac(a2-3)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[Neu5Ac(a2-3)[Gal(b1-4)]Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1-", "wurcs": "WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-6-4-5-4/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_i3-j1_i4-k1_k3-l2_k4-m1", "glycoct": "RES 1b:b-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:b-dglc-HEX-1:5 8s:n-acetyl 9b:b-dgal-HEX-1:5 10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 11s:n-acetyl 12b:a-dman-HEX-1:5 13b:b-dglc-HEX-1:5 14s:n-acetyl 15b:a-lgal-HEX-1:5|6:d 16b:b-dgal-HEX-1:5 17b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 18s:n-acetyl 19b:b-dgal-HEX-1:5 LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:6o(2+1)7d 7:7d(2+1)8n 8:7o(4+1)9d 9:9o(3+2)10d 10:10d(5+1)11n 11:5o(6+1)12d 12:12o(2+1)13d 13:13d(2+1)14n 14:13o(3+1)15d 15:13o(4+1)16d 16:16o(3+2)17d 17:17d(5+1)18n 18:16o(4+1)19d", "inchi": "InChI=1S/C96H158N6O71/c1-22-49(124)60(135)64(139)86(150-22)166-76-48(102-28(7)119)85(158-40(19-112)72(76)164-90-68(143)79(73(41(20-113)159-90)165-87-65(140)61(136)52(127)33(12-105)152-87)173-96(94(147)148)9-30(121)44(98-24(3)115)75(171-96)51(126)32(123)11-104)168-80-62(137)53(128)34(13-106)154-91(80)149-21-42-56(131)77(66(141)88(160-42)162-70-38(17-110)156-83(46(58(70)133)100-26(5)117)161-69-37(16-109)151-82(144)45(57(69)132)99-25(4)116)167-92-81(63(138)54(129)35(14-107)155-92)169-84-47(101-27(6)118)59(134)71(39(18-111)157-84)163-89-67(142)78(55(130)36(15-108)153-89)172-95(93(145)146)8-29(120)43(97-23(2)114)74(170-95)50(125)31(122)10-103/h22,29-92,103-113,120-144H,8-21H2,1-7H3,(H,97,114)(H,98,115)(H,99,116)(H,100,117)(H,101,118)(H,102,119)(H,145,146)(H,147,148)/t22-,29-,30-,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52-,53+,54+,55-,56+,57+,58+,59+,60+,61-,62-,63-,64-,65+,66-,67+,68+,69+,70+,71+,72+,73-,74+,75+,76+,77-,78-,79+,80-,81-,82+,83-,84-,85-,86-,87-,88-,89-,90-,91-,92+,95-,96-/m0/s1", "glycam": "DNeup5Aca2-3[DGalpb1-4]DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH", "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H]([C@@H](O[C@@H]([C@H]2O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O[C@H]4[C@@H]([C@H]([C@H]([C@H](O4)CO)O)O)O)O[C@@]5(C[C@@H]([C@H]([C@@H](O5)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)CO)O[C@H]6[C@H]([C@@H]([C@H](O[C@@H]6OC[C@@H]7[C@H]([C@@H]([C@@H]([C@@H](O7)O[C@@H]8[C@H](O[C@H]([C@@H]([C@H]8O)NC(=O)C)O[C@@H]9[C@H](O[C@H]([C@@H]([C@H]9O)NC(=O)C)O)CO)CO)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)CO)O)O)NC(=O)C)O)O)O", "inchi_key": { "key": "BOTUFMVBKOHNFH-SWZYCYPDSA-N", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/BOTUFMVBKOHNFH-SWZYCYPDSA-N" }, "byonic": "HexNAc(4)Hex(6)dHex(1)NeuAc(2) % 2530.89373826", "gwb": "freeEnd--1b1D-GlcNAc,p--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p)--6a1D-Man,p--2b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p(--3a2D-NeuAc,p)--4b1D-Gal,p$MONO,Und,0,0,freeEnd", "species": [], "classification": [ { "type": { "name": "N-linked", "url": "" }, "subtype": { "name": "Arm-fucosylated" } }, { "type": { "name": "N-linked", "url": "" }, "subtype": { "name": "Biantennary" } }, { "type": { "name": "N-linked", "url": "" }, "subtype": { "name": "Complex", "url": "" } } ], "enzyme": [ { "uniprot_canonical_ac": "P42867-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase", "gene": "Dpagt1", "gene_link": "https://www.uniprot.org/uniprotkb/P42867", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q9H3H5-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase", "gene": "DPAGT1", "gene_link": "https://www.uniprot.org/uniprotkb/Q9H3H5", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q8BML3-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG13", "gene": "Glt28d2", "gene_link": "https://www.uniprot.org/uniprotkb/Q8BML3", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q96F25-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14", "gene": "ALG14", "gene_link": "https://www.uniprot.org/uniprotkb/Q96F25", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q9D081-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14", "gene": "Alg14", "gene_link": "https://www.uniprot.org/uniprotkb/Q9D081", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q9D8C3-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG13", "gene": "Alg13", "gene_link": "https://www.uniprot.org/uniprotkb/Q9D8C3", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q9NP73-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG13", "gene": "ALG13", "gene_link": "https://www.uniprot.org/uniprotkb/Q9NP73", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q921Q3-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "gene": "Alg1", "gene_link": "https://www.uniprot.org/uniprotkb/Q921Q3", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q9BT22-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "gene": "ALG1", "gene_link": "https://www.uniprot.org/uniprotkb/Q9BT22", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q9DBE8-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2", "gene": "Alg2", "gene_link": "https://www.uniprot.org/uniprotkb/Q9DBE8", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q9H553-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2", "gene": "ALG2", "gene_link": "https://www.uniprot.org/uniprotkb/Q9H553", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "P26572-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase", "gene": "MGAT1", "gene_link": "https://www.uniprot.org/uniprotkb/P26572", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "P27808-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase", "gene": "Mgat1", "gene_link": "https://www.uniprot.org/uniprotkb/P27808", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "O60512-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Beta-1,4-galactosyltransferase 3", "gene": "B4GALT3", "gene_link": "https://www.uniprot.org/uniprotkb/O60512", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "O60909-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Beta-1,4-galactosyltransferase 2", "gene": "B4GALT2", "gene_link": "https://www.uniprot.org/uniprotkb/O60909", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "P15291-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Beta-1,4-galactosyltransferase 1", "gene": "B4GALT1", "gene_link": "https://www.uniprot.org/uniprotkb/P15291", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "P15535-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Beta-1,4-galactosyltransferase 1", "gene": "B4galt1", "gene_link": "https://www.uniprot.org/uniprotkb/P15535", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q91YY2-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Beta-1,4-galactosyltransferase 3", "gene": "B4galt3", "gene_link": "https://www.uniprot.org/uniprotkb/Q91YY2", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Beta-1,4-galactosyltransferase 2", "gene": "B4galt2", "gene_link": "https://www.uniprot.org/uniprotkb/Q9Z2Y2", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q10469-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase", "gene": "MGAT2", "gene_link": "https://www.uniprot.org/uniprotkb/Q10469", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q921V5-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase", "gene": "Mgat2", "gene_link": "https://www.uniprot.org/uniprotkb/Q921V5", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "P97325-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase", "gene": "St3gal3", "gene_link": "https://www.uniprot.org/uniprotkb/P97325", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q11203-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase", "gene": "ST3GAL3", "gene_link": "https://www.uniprot.org/uniprotkb/Q11203", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q11206-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4", "gene": "ST3GAL4", "gene_link": "https://www.uniprot.org/uniprotkb/Q11206", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q8VIB3-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase", "gene": "St3gal6", "gene_link": "https://www.uniprot.org/uniprotkb/Q8VIB3", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q91Y74-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4", "gene": "St3gal4", "gene_link": "https://www.uniprot.org/uniprotkb/Q91Y74", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q9Y274-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase", "gene": "ST3GAL6", "gene_link": "https://www.uniprot.org/uniprotkb/Q9Y274", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "O88819-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9", "gene": "Fut9", "gene_link": "https://www.uniprot.org/uniprotkb/O88819", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "P21217-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase FUT3", "gene": "FUT3", "gene_link": "https://www.uniprot.org/uniprotkb/P21217", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "P22083-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Alpha-(1,3)-fucosyltransferase 4", "gene": "FUT4", "gene_link": "https://www.uniprot.org/uniprotkb/P22083", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "P51993-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase FUT6", "gene": "FUT6", "gene_link": "https://www.uniprot.org/uniprotkb/P51993", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q11127-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "Alpha-(1,3)-fucosyltransferase 4", "gene": "Fut4", "gene_link": "https://www.uniprot.org/uniprotkb/Q11127", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q11128-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase FUT5", "gene": "FUT5", "gene_link": "https://www.uniprot.org/uniprotkb/Q11128", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] }, { "uniprot_canonical_ac": "Q9Y231-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G07248LS", "protein_name": "4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9", "gene": "FUT9", "gene_link": "https://www.uniprot.org/uniprotkb/Q9Y231", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G07248LS", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G07248LS" } ] } ], "crossref": [ { "id": "156617374", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/156617374", "database": "PubChem Compound", "categories": [ "Chemical" ] }, { "id": "445514681", "url": "https://pubchem.ncbi.nlm.nih.gov/substance/445514681", "database": "PubChem Substance", "categories": [ "Chemical" ] }, { "id": "G07248LS", "url": "https://glytoucan.org/Structures/Glycans/G07248LS", "database": "GlyTouCan", "categories": [ "Glycomics" ] }, { "id": "G07248LS", "url": "https://sandbox.glyomics.org/explore.html?G07248LS", "database": "SandBox", "categories": [ "Enzyme and Pathway" ] }, { "id": "G07248LS", "url": "https://gnome.glyomics.org/restrictions/GlyGen.StructureBrowser.html?focus=G07248LS", "database": "GNOme", "categories": [ "Glycomics", "Ontology and Dictionary" ] }, { "id": "G07248LS", "url": "https://glycosmos.org/glycans/show/G07248LS", "database": "GlyCosmos", "categories": [ "Glycoproteomics", "Glycomics" ] } ], "glycoprotein": [], "publication": [], "residues": [ { "id": "NA", "name": "N-glycan_core_D-GlcNAc_A", "attachedby": "rxn.P42867-1", "detachedby": "", "parentid": "0" }, { "id": "NA", "name": "N-glycan_core_D-GlcNAc_A", "attachedby": "rxn.Q9H3H5-1", "detachedby": "", "parentid": "0" }, { "id": "NB", "name": "N-glycan_core_b-D-GlcpNAc_B", "attachedby": "rxn.Q8BML3-1", "detachedby": "", "parentid": "NA" }, { "id": "NB", "name": "N-glycan_core_b-D-GlcpNAc_B", "attachedby": "rxn.Q96F25-1", "detachedby": "", "parentid": "NA" }, { "id": "NB", "name": "N-glycan_core_b-D-GlcpNAc_B", "attachedby": "rxn.Q9D081-1", "detachedby": "", "parentid": "NA" }, { "id": "NB", "name": "N-glycan_core_b-D-GlcpNAc_B", "attachedby": "rxn.Q9D8C3-1", "detachedby": "", "parentid": "NA" }, { "id": "NB", "name": "N-glycan_core_b-D-GlcpNAc_B", "attachedby": "rxn.Q9NP73-1", "detachedby": "", "parentid": "NA" }, { "id": "NC", "name": "N-glycan_core_b-D-Manp_C", "attachedby": "rxn.Q921Q3-1", "detachedby": "", "parentid": "NB" }, { "id": "NC", "name": "N-glycan_core_b-D-Manp_C", "attachedby": "rxn.Q9BT22-1", "detachedby": "", "parentid": "NB" }, { "id": "N1", "name": "N-glycan_a-D-Manp_1", "attachedby": "rxn.Q9DBE8-1", "detachedby": "", "parentid": "NC" }, { "id": "N1", "name": "N-glycan_a-D-Manp_1", "attachedby": "rxn.Q9H553-1", "detachedby": "", "parentid": "NC" }, { "id": "N2", "name": "N-glycan_b-D-GlcpNAc_2", "attachedby": "rxn.P26572-1", "detachedby": "", "parentid": "N1" }, { "id": "N2", "name": "N-glycan_b-D-GlcpNAc_2", "attachedby": "rxn.P27808-1", "detachedby": "", "parentid": "N1" }, { "id": "N3", "name": "N-glycan_b-D-Galp_3", "attachedby": "rxn.O60512-1", "detachedby": "", "parentid": "N2" }, { "id": "N3", "name": "N-glycan_b-D-Galp_3", "attachedby": "rxn.O60909-1", "detachedby": "", "parentid": "N2" }, { "id": "N3", "name": "N-glycan_b-D-Galp_3", "attachedby": "rxn.P15291-1", "detachedby": "", "parentid": "N2" }, { "id": "N3", "name": "N-glycan_b-D-Galp_3", "attachedby": "rxn.P15535-1", "detachedby": "", "parentid": "N2" }, { "id": "N3", "name": "N-glycan_b-D-Galp_3", "attachedby": "rxn.Q91YY2-1", "detachedby": "", "parentid": "N2" }, { "id": "N3", "name": "N-glycan_b-D-Galp_3", "attachedby": "rxn.Q9Z2Y2-1", "detachedby": "", "parentid": "N2" }, { "id": "N4", "name": "N-glycan_a-D-Manp_4", "attachedby": "rxn.Q9DBE8-1", "detachedby": "", "parentid": "NC" }, { "id": "N4", "name": "N-glycan_a-D-Manp_4", "attachedby": "rxn.Q9H553-1", "detachedby": "", "parentid": "NC" }, { "id": "N5", "name": "N-glycan_b-D-GlcpNAc_5", "attachedby": "rxn.Q10469-1", "detachedby": "", "parentid": "N4" }, { "id": "N5", "name": "N-glycan_b-D-GlcpNAc_5", "attachedby": "rxn.Q921V5-1", "detachedby": "", "parentid": "N4" }, { "id": "N6", "name": "N-glycan_b-D-Galp_6", "attachedby": "rxn.O60512-1", "detachedby": "", "parentid": "N5" }, { "id": "N6", "name": "N-glycan_b-D-Galp_6", "attachedby": "rxn.O60909-1", "detachedby": "", "parentid": "N5" }, { "id": "N6", "name": "N-glycan_b-D-Galp_6", "attachedby": "rxn.P15291-1", "detachedby": "", "parentid": "N5" }, { "id": "N6", "name": "N-glycan_b-D-Galp_6", "attachedby": "rxn.P15535-1", "detachedby": "", "parentid": "N5" }, { "id": "N6", "name": "N-glycan_b-D-Galp_6", "attachedby": "rxn.Q91YY2-1", "detachedby": "", "parentid": "N5" }, { "id": "N6", "name": "N-glycan_b-D-Galp_6", "attachedby": "rxn.Q9Z2Y2-1", "detachedby": "", "parentid": "N5" }, { "id": "N16", "name": "N-glycan_a-D-NeupNAc_16", "attachedby": "rxn.P97325-1", "detachedby": "", "parentid": "N6" }, { "id": "N16", "name": "N-glycan_a-D-NeupNAc_16", "attachedby": "rxn.Q11203-1", "detachedby": "", "parentid": "N6" }, { "id": "N16", "name": "N-glycan_a-D-NeupNAc_16", "attachedby": "rxn.Q11206-1", "detachedby": "", "parentid": "N6" }, { "id": "N16", "name": "N-glycan_a-D-NeupNAc_16", "attachedby": "rxn.Q8VIB3-1", "detachedby": "", "parentid": "N6" }, { "id": "N16", "name": "N-glycan_a-D-NeupNAc_16", "attachedby": "rxn.Q91Y74-1", "detachedby": "", "parentid": "N6" }, { "id": "N16", "name": "N-glycan_a-D-NeupNAc_16", "attachedby": "rxn.Q9Y274-1", "detachedby": "", "parentid": "N6" }, { "id": "N17", "name": "N-glycan_a-D-NeupNAc_17", "attachedby": "rxn.P97325-1", "detachedby": "", "parentid": "N3" }, { "id": "N17", "name": "N-glycan_a-D-NeupNAc_17", "attachedby": "rxn.Q11203-1", "detachedby": "", "parentid": "N3" }, { "id": "N17", "name": "N-glycan_a-D-NeupNAc_17", "attachedby": "rxn.Q11206-1", "detachedby": "", "parentid": "N3" }, { "id": "N17", "name": "N-glycan_a-D-NeupNAc_17", "attachedby": "rxn.Q8VIB3-1", "detachedby": "", "parentid": "N3" }, { "id": "N17", "name": "N-glycan_a-D-NeupNAc_17", "attachedby": "rxn.Q91Y74-1", "detachedby": "", "parentid": "N3" }, { "id": "N17", "name": "N-glycan_a-D-NeupNAc_17", "attachedby": "rxn.Q9Y274-1", "detachedby": "", "parentid": "N3" }, { "id": "N42", "name": "N-glycan_a-L-Fucp_42", "attachedby": "rxn.O88819-1", "detachedby": "", "parentid": "N5" }, { "id": "N42", "name": "N-glycan_a-L-Fucp_42", "attachedby": "rxn.P21217-1", "detachedby": "", "parentid": "N5" }, { "id": "N42", "name": "N-glycan_a-L-Fucp_42", "attachedby": "rxn.P22083-1", "detachedby": "", "parentid": "N5" }, { "id": "N42", "name": "N-glycan_a-L-Fucp_42", "attachedby": "rxn.P51993-1", "detachedby": "", "parentid": "N5" }, { "id": "N42", "name": "N-glycan_a-L-Fucp_42", "attachedby": "rxn.Q11127-1", "detachedby": "", "parentid": "N5" }, { "id": "N42", "name": "N-glycan_a-L-Fucp_42", "attachedby": "rxn.Q11128-1", "detachedby": "", "parentid": "N5" }, { "id": "N42", "name": "N-glycan_a-L-Fucp_42", "attachedby": "rxn.Q9Y231-1", "detachedby": "", "parentid": "N5" } ], "composition": [ { "name": "6-Deoxy-Hexose", "residue": "dhex", "count": 1, "cid": "840", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/840" }, { "name": "Hexose", "residue": "hex", "count": 6, "cid": "206", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/206" }, { "name": "N-Acetylhexosamine", "residue": "hexnac", "count": 4, "cid": "899", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/899" }, { "name": "Hexuronic Acid", "residue": "hexa", "count": 0, "cid": "610", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/610" }, { "name": "2-Amino-2-Deoxy-Hexose", "residue": "hexn", "count": 0, "cid": "739", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/739" }, { "name": "N-Acetyl-Neuraminic Acid", "residue": "neuac", "count": 2, "cid": "439197", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/439197" }, { "name": "N-Glycolyl-Neuraminic Acid", "residue": "neugc", "count": 0, "cid": "440001", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/440001" }, { "name": "Phosphate", "residue": "p", "count": 0, "cid": "1061", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/1061" }, { "name": "Pentose", "residue": "pent", "count": 0, "cid": "229", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/229" }, { "name": "Sulfate", "residue": "s", "count": 0, "cid": "1117", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/1117" }, { "name": "Other", "residue": "other", "count": 0 } ], "composition_expanded": [ { "name": "Alditol", "residue": "aldi", "count": 0 }, { "name": "6-Deoxy-Hexose", "residue": "dhex", "count": 1, "cid": "840", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/840" }, { "name": "6-Deoxy-Hexitol", "residue": "dhex+aldi", "count": 0 }, { "name": "L-Fucose", "residue": "fuc", "count": 1, "cid": "17106", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/17106" }, { "name": "L-Fucitol", "residue": "fuc+aldi", "count": 0, "cid": "445724", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/445724" }, { "name": "D-Galactose", "residue": "gal", "count": 3, "cid": "6036", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/6036" }, { "name": "D-Galactitol", "residue": "gal+aldi", "count": 0, "cid": "11850", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/11850" }, { "name": "N-Acetyl-D-galactosamine", "residue": "galnac", "count": 0, "cid": "35717", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/35717" }, { "name": "N-Acetylgalactosaminitol", "residue": "galnac+aldi", "count": 0, "cid": "165880", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/165880" }, { "name": "D-Galacturonic Acid", "residue": "gala", "count": 0, "cid": "439215", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/439215" }, { "name": "D-Glucose", "residue": "glc", "count": 0, "cid": "5793", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/5793" }, { "name": "D-Glucitol", "residue": "glc+aldi", "count": 0, "cid": "5780", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/5780" }, { "name": "D-Glucuronic acid", "residue": "glca", "count": 0, "cid": "94715", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/94715" }, { "name": "D-Glucosamine", "residue": "glcn", "count": 0, "cid": "439213", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/439213" }, { "name": "N-Acetyl-D-Glucosamine", "residue": "glcnac", "count": 4, "cid": "439174", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/439174" }, { "name": "N-Acetyl-D-glucosaminitol", "residue": "glcnac+aldi", "count": 0, "cid": "165206", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/165206" }, { "name": "Hexose", "residue": "hex", "count": 6, "cid": "206", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/206" }, { "name": "N-Acetylhexosamine", "residue": "hexnac", "count": 4, "cid": "899", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/899" }, { "name": "Hexuronic Acid", "residue": "hexa", "count": 0, "cid": "610", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/610" }, { "name": "2-Amino-2-Deoxy-Hexose", "residue": "hexn", "count": 0, "cid": "739", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/739" }, { "name": "Hexitol", "residue": "hex+aldi", "count": 0, "cid": "453", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/453" }, { "name": "N-Acetylhexosaminitol", "residue": "hexnac+aldi", "count": 0 }, { "name": "L-Iduronic acid", "residue": "idoa", "count": 0, "cid": "441039", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/441039" }, { "name": "D-Mannose", "residue": "man", "count": 3, "cid": "18950", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/18950" }, { "name": "D-Mannitol", "residue": "man+aldi", "count": 0, "cid": "6251", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/6251" }, { "name": "N-Acetyl-D-mannosamine", "residue": "mannac", "count": 0, "cid": "439281", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/439281" }, { "name": "Methyl", "residue": "me", "count": 0 }, { "name": "N-Acetyl-Neuraminic Acid", "residue": "neuac", "count": 2, "cid": "439197", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/439197" }, { "name": "N-Glycolyl-Neuraminic Acid", "residue": "neugc", "count": 0, "cid": "440001", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/440001" }, { "name": "Phosphate", "residue": "p", "count": 0, "cid": "1061", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/1061" }, { "name": "Pentose", "residue": "pent", "count": 0, "cid": "229", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/229" }, { "name": "Sulfate", "residue": "s", "count": 0, "cid": "1117", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/1117" }, { "name": "Sialic acid", "residue": "sia", "count": 2 }, { "name": "Other", "residue": "other", "count": 0 }, { "name": "Floating substituent", "residue": "x", "count": 0 }, { "name": "D-Xylose", "residue": "xyl", "count": 0, "cid": "135191", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/135191" }, { "name": "Ketodeoxynononic acid", "residue": "kdn", "count": 0, "cid": "13991616", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/13991616" } ], "motifs": [ { "id": "GGM.000001", "name": "Type 2 LN", "synonym": "N-acetyllactosamine", "keywords": "LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2" }, { "id": "GGM.000018", "name": "Lewis x", "synonym": "Le^x; Lex; SSEA-1", "keywords": "Lewis x" }, { "id": "GGM.000022", "name": "Sialyl Lewis x", "synonym": "SLe^x; SLex; Slex", "keywords": "Lewis x" }, { "id": "GGM.000034", "name": "3-Sialyl-LN (type 2)", "synonym": "", "keywords": "LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2" } ], "interactions": [], "expression": [], "tissue": [], "subsumption": [ { "related_accession": "G14796IU", "relationship": "ancestor" }, { "related_accession": "G17659SI", "relationship": "ancestor" }, { "related_accession": "G18307ZZ", "relationship": "ancestor" }, { "related_accession": "G23566QY", "relationship": "ancestor" }, { "related_accession": "G24251YG", "relationship": "ancestor" }, { "related_accession": "G24865DD", "relationship": "ancestor" }, { "related_accession": "G26287OA", "relationship": "ancestor" }, { "related_accession": "G38643YG", "relationship": "ancestor" }, { "related_accession": "G56244YU", "relationship": "ancestor" }, { "related_accession": "G58691PQ", "relationship": "ancestor" }, { "related_accession": "G82851XG", "relationship": "ancestor" }, { "related_accession": "G86886TH", "relationship": "ancestor" }, { "related_accession": "G86886TH", "relationship": "basecomposition" }, { "related_accession": "G38643YG", "relationship": "composition" }, { "related_accession": "G26287OA", "relationship": "subsumedby" }, { "related_accession": "G17659SI", "relationship": "topology" } ], "names": [], "keywords": [ "fully_determined" ], "glycotree_pathways": [ { "source": "G22018CH", "target": "G07248LS", "residue_affected": { "id": "N239", "full_name": "β-D-Galp" }, "enzymes": [ { "uniprotkb_ac": "abiotic", "tax_name": "no known organism" } ] }, { "source": "G55414RN", "target": "G22018CH", "residue_affected": { "id": "N17", "full_name": "α-D-NeupNAc" }, "enzymes": [ { "uniprotkb_ac": "Q91Y74", "tax_name": "Mus musculus" } ] }, { "source": "G39302PS", "target": "G55414RN", "residue_affected": { "id": "N3", "full_name": "β-D-Galp" }, "enzymes": [ { "uniprotkb_ac": "Q9Z2Y2", "tax_name": "Mus musculus" } ] }, { "source": "G05368PM", "target": "G39302PS", "residue_affected": { "id": "N16", "full_name": "α-D-NeupNAc" }, "enzymes": [ { "uniprotkb_ac": "Q91Y74", "tax_name": "Mus musculus" } ] }, { "source": "G64830WP", "target": "G05368PM", "residue_affected": { "id": "N6", "full_name": "β-D-Galp" }, "enzymes": [ { "uniprotkb_ac": "Q9Z2Y2", "tax_name": "Mus musculus" } ] }, { "source": "G39213VZ", "target": "G64830WP", "residue_affected": { "id": "N42", "full_name": "α-L-Fucp" }, "enzymes": [ { "uniprotkb_ac": "Q11127", "tax_name": "Mus musculus" } ] }, { "source": "G61751GZ", "target": "G39213VZ", "residue_affected": { "id": "N5", "full_name": "β-D-GlcpNAc" }, "enzymes": [ { "uniprotkb_ac": "Q921V5", "tax_name": "Mus musculus" } ] }, { "source": "G22768VO", "target": "G61751GZ", "residue_affected": { "id": "N2", "full_name": "β-D-GlcpNAc" }, "enzymes": [ { "uniprotkb_ac": "P27808", "tax_name": "Mus musculus" } ] } ], "dictionary": {}, "biomarkers": [], "section_stats": [ { "table_id": "glycoprotein", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "expression", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "expression_tissue", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "expression_cell_line", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }