{
    "bcoid": "GLY_001187",
    "title": "Bovine Protein Isoform sequences (UniProtKB)",
    "description": "The Bovine Protein Isoform sequences (UniProtKB) dataset contains Bos taurus [taxid:9913] protein fasta ...",
    "filename_list": "bovine_protein_allsequences.fasta",
    "filename": "bovine_protein_allsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "All Protein Sequences"
        ],
        "file_type": [
            "fasta"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>tr|A0A3Q1LIA6-1|PLCB1_BOVIN Isoform 1 of 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 OS=Bos taurus OX=9913 GN=PLCB1 PE=1 SV=1 CANONICAL=P10894-1\nMITVVYGPDLVNISHLNLVAFQEEVAKEWTNEVFSLATNLLAQNMSRDAFLEKAYTKLKL\nQVTPEGRIPLKNIYRLFSADRKRVETALEACSLPSSRNDSIPQEDFTPEVYRVFLNNLCP\nRPEIDNIFSEFGAKSKPYLTVDQMMDFINLKQRDPRLNEILYPPLKQEQVQVLIEKYEPN\nNSLAKKGQISVDGFMRYLSGEENGVVSPEKLDLNEDMSQPLSHYFINSSHNTYLTAGQLA\nGNSSVEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHGFTMTTEISFKEVIEAIAECAFK\nTSPFPILLSFENHVDSPKQQAKMAEYCRLIFGDALLMEPLDKYPLESGVPLPSPMDLMYK\nILVKNKKKSHKSSEGSGKKKLSEQASNTYSDSSSVFEPSSPGAGEADTESDDDDDDDDCK\nKSSMDEGTAGSEAMATEEMSNLVNYIQPVKFESFEISKKRNRSFEMSSFVETKGLEQLTK\nSPVEFVEYNKMQLSRIYPKGTRVDSSNYMPQLFWNAGCQMVALNFQTVDLAMQINMGMYE\nYNGKSGYRLKPEFMRRPDKHFDPFTEGIVDGIVANTLSVKIISGQFLSDKKVGTYVEVDM\nFGLPVDTRRKAFKTKTSQGNAVNPIWEEEPIVFKKVVLPSLACLRIAVYEEGGKFIGHRI\nLPVQAIRPGYHYICLRNERNQPLMLPALFVYIEVKDYVPDTYADVIEALSNPIRYVNLME\nQRAKQLAALTLEDEEEVKKEADPGETPSEAPSEARPTPAENGVNHTTSLTPKPPSQALHS\nQPAPGSVKAPAKTEDLIQSVLTEVEAQTIEELKQQKSFVKLQKKHYKEMKDLVKRHHKKT\nTDLIKEHTTKYNEIQNDYLRRRAALEKTAKKDNKKKSEPSSPDHVSSTIEQDLAALDAEM\nTQKLVDLKDKQQQQLLNLRQEQYYSEKYQKREHIKLLIQKLTDVAEECQNNQLKKLKEIC\nEKEKKELKKKMDKKRQEKITEAKSKDKSQMEEEKTEMIRSYIQEVVQYIKRLEEAQSKRQ\nEKLVEKHKEIRQQILDEKPKGDGSSSFLSETCHEDPSVSPNFTPPNPQALK\n\n\n>tr|A0A3Q1NG00-1|PLCB1_BOVIN Isoform 1 of 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 OS=Bos taurus OX=9913 GN=PLCB1 PE=1 SV=2 CANONICAL=P10894-1\nMYEGKKSGKEYIHMKSESVSHSVMSDCLQPMDCSPSGSSVHGILQDPKLRELLDVGNIGR\nLEHRMITVVYGPDLVNISHLNLVAFQEEVAKEWTNEVFSLATNLLAQNMSRDAFLEKAYT\nKLKLQVTPEGRIPLKNIYRLFSADRKRVETALEACSLPSSRNDSIPQEDFTPEVYRVFLN\nNLCPRPEIDNIFSEFGAKSKPYLTVDQMMDFINLKQRDPRLNEILYPPLKQEQVQVLIEK\nYEPNNSLAKKGQISVDGFMRYLSGEENGVVSPEKLDLNEDMSQPLSHYFINSSHNTYLTA\nGQLAGNSSVEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHGFTMTTEISFKEVIEAIAE\nCAFKTSPFPILLSFENHVDSPKQQAKMAEYCRLIFGDALLMEPLDKYPLESGVPLPSPMD\nLMYKILVKNKKKSHKSSEGSGKKKLSEQASNTYSDSSSVFEPSSPGAGEADTESDDDDDD\nDDCKKSSMDEGTAGSEAMATEEMSNLVNYIQPVKFESFEISKKRNRSFEMSSFVETKGLE\nQLTKSPVEFVEYNKMQLSRIYPKGTRVDSSNYMPQLFWNAGCQMVALNFQTVDLAMQINM\nGMYEYNGKSGYRLKPEFMRRPDKHFDPFTEGIVDGIVANTLSVKIISGQFLSDKKVGTYV\nEVDMFGLPVDTRRKAFKTKTSQGNAVNPIWEEEPIVFKKVVLPSLACLRIAVYEEGGKFI\nGHRILPVQAIRPGYHYICLRNERNQPLMLPALFVYIEVKDYVPDTYADVIEALSNPIRYV\nNLMEQRAKQLAALTLEDEEEVKKEADPGETPSEAPSEARPTPAENGVNHTTSLTPKPPSQ\nALHSQPAPGSVKAPAKTEDLIQSVLTEVEAQTIEELKQQKSFVKLQKKHYKEMKDLVKRH\nHKKTTDLIKEHTTKYNEIQNDYLRRRAALEKTAKKDNKKKSEPSSPDHVSSTIEQDLAAL\nDAEMTQKLVDLKDKQQQQLLNLRQEQYYSEKYQKREHIKLLIQKLTDVAEECQNNQLKKL\nKEICEKEKKELKKKMDKKRQEKITEMKMTFSVTVLQLEEAQSKRQEKLVEKHKEIRQQIL\nDEKPKLQVELEQEYQDKFKRLPLEILEFVQEAMKGKISEDSNHSSAPPLMTSDSGKLNQK\nPPSSEELEGENPGKEFDTPL\n\n\n>tr|A0AAF6ZHX3-1|PLCB1_BOVIN Isoform 1 of 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 OS=Bos taurus OX=9913 GN=PLCB1 PE=1 SV=1 CANONICAL=P10894-1\nMAGAQPGVHALQLKPVCVSDSLKKGTKFVKWEDDSTVVTPIILRTDPQGFFFYWTDQNKE\nTELLDLSLVKDARCGKHAKAPKDPKLRELLDVGNIGRLEHRMITVVYGPDLVNISHLNLV\nAFQEEVAKEWTNEVFSLATNLLAQNMSRDAFLEKAYTKLKLQVTPEGRIPLKNIYRLFSA\nDRKRVETALEACSLPSSRNDSIPQEDFTPEVYRVFLNNLCPRPEIDNIFSEFGAKSKPYL\nTVDQMMDFINLKQRDPRLNEILYPPLKQEQVQVLIEKYEPNNSLAKKGQISVDGFMRYLS\nGEENGVVSPEKLDLNEDMSQPLSHYFINSSHNTYLTAGQLAGNSSVEMYRQVLLSGCRCV\nELDCWKGRTAEEEPVITHGFTMTTEISFKEVIEAIAECAFKTSPFPILLSFENHVDSPKQ\nQAKMAEYCRLIFGDALLMEPLDKYPLESGVPLPSPMDLMYKILVKNKKKSHKSSEGSGKK\nKLSEQASNTYSDSSSVFEPSSPGAGEADTESDDDDDDDDCKKSSMDEGTAGSEAMATEEM\nSNLVNYIQPVKFESFEISKKRNRSFEMSSFVETKGLEQLTKSPVEFVEYNKMQLSRIYPK\nGTRVDSSNYMPQLFWNAGCQMVALNFQTVDLAMQINMGMYEYNGKSGYRLKPEFMRRPDK\nHFDPFTEGIVDGIVANTLSVKIISGQFLSDKKVGTYVEVDMFGLPVDTRRKAFKTKTSQG\nNAVNPIWEEEPIVFKKVVLPSLACLRIAVYEEGGKFIGHRILPVQAIRPGYHYICLRNER\nNQPLMLPALFVYIEVKDYVPDTYADVIEALSNPIRYVNLMEQRAKQLAALTLEDEEEVKK\nEADPGETPSEAPSEARPTPAENGVNHTTSLTPKPPSQALHSQPAPGSVKAPAKTEDLIQS\nVLTEVEAQTIEELKQQKSFVKLQKKHYKEMKDLVKRHHKKTTDLIKEHTTKYNEIQNDYL\nRRRAALEKTAKKDNKKKSEPSSPDHVSSTIEQDLAALDAEMTQKLVDLKDKQQQQLLNLR\nQEQYYSEKYQKREHIKLLIQKLTDVAEECQNNQLKKLKEICEKEKKELKKKMDKKRQEKI\nTEAKSKDKSQMEEEKTEMIRSYIQEVVQYIKRLEEAQSKRQEKLVEKHKEIRQQILDEKP\nKGDGSSSFLSETCHEDPSVSPNFTPPNPQALK\n\n\n>sp|P10894-1|PLCB1_BOVIN Isoform 1 of 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 OS=Bos taurus OX=9913 GN=PLCB1 PE=1 SV=1 CANONICAL=P10894-1\nMAGAQPGVHALQLKPVCVSDSLKKGTKFVKWEDDSTVVTPIILRTDPQGFFFYWTDQNKE\nTELLDLSLVKDARCGKHAKAPKDPKLRELLDVGNIGRLEHRMITVVYGPDLVNISHLNLV\nAFQEEVAKEWTNEVFSLATNLLAQNMSRDAFLEKAYTKLKLQVTPEGRIPLKNIYRLFSA\nDRKRVETALEACSLPSSRNDSIPQEDFTPEVYRVFLNNLCPRPEIDNIFSEFGAKSKPYL\nTVDQMMDFINLKQRDPRLNEILYPPLKQEQVQVLIEKYEPNNSLAKKGQISVDGFMRYLS\nGEENGVVSPEKLDLNEDMSQPLSHYFINSSHNTYLTAGQLAGNSSVEMYRQVLLSGCRCV\nELDCWKGRTAEEEPVITHGFTMTTEISFKEVIEAIAECAFKTSPFPILLSFENHVDSPKQ\nQAKMAEYCRLIFGDALLMEPLDKYPLESGVPLPSPMDLMYKILVKNKKKSHKSSEGSGKK\nKLSEQASNTYSDSSSVFEPSSPGAGEADTESDDDDDDDDCKKSSMDEGTAGSEAMATEEM\nSNLVNYIQPVKFESFEISKKRNRSFEMSSFVETKGLEQLTKSPVEFVEYNKMQLSRIYPK\nGTRVDSSNYMPQLFWNAGCQMVALNFQTVDLAMQINMGMYEYNGKSGYRLKPEFMRRPDK\nHFDPFTEGIVDGIVANTLSVKIISGQFLSDKKVGTYVEVDMFGLPVDTRRKAFKTKTSQG\nNAVNPIWEEEPIVFKKVVLPSLACLRIAVYEEGGKFIGHRILPVQAIRPGYHYICLRNER\nNQPLMLPALFVYIEVKDYVPDTYADVIEALSNPIRYVNLMEQRAKQLAALTLEDEEEVKK\nEADPGETPSEAPSEARPTPAENGVNHTTSLTPKPPSQALHSQPAPGSVKAPAKTEDLIQS\nVLTEVEAQTIEELKQQKSFVKLQKKHYKEMKDLVKRHHKKTTDLIKEHTTKYNEIQNDYL\nRRRAALEKTAKKDNKKKSEPSSPDHVSSTIEQDLAALDAEMTQKLVDLKDKQQQQLLNLR\nQEQYYSEKYQKREHIKLLIQKLTDVAEECQNNQLKKLKEICEKEKKELKKKMDKKRQEKI\nTEAKSKDKSQMEEEKTEMIRSYIQEVVQYIKRLEEAQSKRQEKLVEKHKEIRQQILDEKP\nKLQVELEQEYQDKFKRLPLEILEFVQEAMKGKISEDSNHSSAPPLMTSDSGKLNQKPPSS\nEELEGENPGKEFDTPL\n\n\n>tr|A0A3Q1LK65-1|THTPA_BOVIN Isoform 1 of Thiamine-triphosphatase OS=Bos taurus OX=9913 GN=THTPA PE=1 SV=2 CANONICAL=Q8MKF1-1\nMAQGLIEVERKFVPGPSTEERLQELGGTLEHRVTFRDSYYDTPELSLMRADYWLRQREGS\nGWELKCPGAAGVSGPHTEYTELTAEPSIVAQLCEVLGAEVPGAGGVAAVLGPLGLQLVAS\nFVTKRSAWKLVLSGADGEERLLRVDLDTADFGYAVGEVEALVHKEAEVPAALEKIHHLSS\nLLGVLEQGRAPAKLIVYLQRFRPQDYQRLLEVYGSKEKPGTGDLD\n\n\n>sp|Q8MKF1-1|THTPA_BOVIN Isoform 1 of Thiamine-triphosphatase OS=Bos taurus OX=9913 GN=THTPA PE=1 SV=3 CANONICAL=Q8MKF1-1\nMAQGLIEVERKFVPGPSTEERLQELGGTLEHRVTFRDSYYDTPELSLMRADYWLRQREGS\nGWELKCPGAAGVSGPHTEYTELTAEPSIVAQLCEVLGAEVPGAGGVAAVLGPLGLQLVAS\nFVTKRSAWKLVLSGADGEERLLRVDLDTADFGYAVGEVEALVHKEAEVPAALEKIHHLSS\nLLGVLEQGRAPAKLIVYLQRFRPQDYQRLLEVYGSKEKP\n\n\n>tr|A0A3Q1LR39-1|ODAD3_BOVIN Isoform 1 of Outer dynein arm-docking complex subunit 3 OS=Bos taurus OX=9913 GN=ODAD3 PE=1 SV=1 CANONICAL=A7MBH5-1\nMERTAAGKELALAPLQDWGEETEDGAVYSVSLRRQRSQRSSPGAGPRVTQALNPAPDTFL\nHYRTSKVRALRAARLERLVRELVSGDPEQDPGFVPAFLATHRAFVPTGRVLGLLLPPPAP\nPLPPGVEIKKTEGRDLTFNKNLRAVVSVLGLWLRDHPQDFWDPPAHSDLGSVCNFLGWAA\nPSGAEAQEAEKLLGDFLKEAKTEQEEEEQCQTRAGPPGTAQILCPDSPMGCLEDEEGLVW\nEGPELLDFSVDDVAEQLTLMDVELFSRLRPFECLGSVWSQRDRPGATSIAPTVRATVTQF\nNTVTGCVLGSVLGEPGLAAPQRAQRLEKWIRIAQRCRELRNFSSLRAILSALQSNPIYRL\nKRSWGAVSREPLSTFRKLAQIFSDENNHLSSREILSQEATQGPQEGDAPTGSPSSGDLIN\nFEKRRKEWEILARIQQLQRRCQSYCLSPHPPILAALRAQHKLSEEQSYRISRVIEPPASS\nCPSSPCIRRQISLTKRLSAKLSRERVSSPGGSPGDPSSSTSSLSPASPPSSPRTKDPPTG\nSPPASPGPQSPSTKLPLSPDLPGPWSLALPLSGPRISLPGQQGSEARVIRVSIDNDHGNL\nYRSILLTSQDKAPTVVQRALEKHNVAEPWVQDYQLFQVLPGDRELLIPDNANVFYAMSPA\nAPGDFVLRRKEGAQHTTSVSLSTPPGYGPHGQQGVWLL\n\n\n>tr|A0AAA9SGV7-1|ODAD3_BOVIN Isoform 1 of Outer dynein arm-docking complex subunit 3 OS=Bos taurus OX=9913 GN=ODAD3 PE=1 SV=1 CANONICAL=A7MBH5-1\nMTSPLCWAAASNAMPSQDQISTPSKVKATQVQLKPYRSRGKGLVPVWHSLHSKAGPLHAS\nEGKSAVNMQVAELQRKIQLLEGDRKAFYESTQWNIKKNQETINQLREETRVLQLQLTALL\nQGDEKVVQAVIREWKSEKPYLKNRTGQQALEHLDYRLNEKVKQLNALRHQLGLRQKWLEE\nLQLQHSLRELEIAEAQDSNTEVAKTMRNLENRLEKARMKAEEAEHITSVYLQLKAYLQEE\nSLHLGNRLDFMEAEVVRTKHELEELHLVNQEALNARDIAKNQLQYLEETVFRERKKRERY\nLTECKKRAEEKKLQNERMERKTQREHVLLQSDDTLQDSMYSKEEELKRRWSMYQMEVLFG\nKVKDATGVAETHAVVRRFLAQGDTFTQLEMLKSENEQTLLRLKQEKQRLQQELEDLKYSG\nEALLVSEQKRQAELQGRLKMEEQRRADAQNQLDRTMRALQITKEGLEHLAGKLNHIVVAG\nPTYEEGSPGASLDTKGSATPQPQETGRSVGKMDPKVDDYLPNLLGLVEEKLLKLHSQLEN\nHNVPEMLRHIVDLEFYATLEGKLPSYNTRIALPVAGHKDKFFGAAAGLGRGDRGRRGVQC\nLPAAAAQSAFESGGRAPGHPGPQPRARHLPSLPHQQGAGAEGGAAGAASEGVGVRRSRAG\nPRLRARLSGHPPGLRAYWPRAGPPPATTCAATPARGGNQENRRKRSDFQQELEGCGVSAG\nLMAAGPPSGFLGPPCPLGPRQCLQLSGLGSSIRG\n\n\n>tr|A0AAA9T3M8-1|ODAD3_BOVIN Isoform 1 of Outer dynein arm-docking complex subunit 3 OS=Bos taurus OX=9913 GN=ODAD3 PE=1 SV=1 CANONICAL=A7MBH5-1\nMGSARRRLLGDALRPHAAARKRQQVSRRGLLPAEGRRLSLRSTGFLHRSVQREGDRKAFY\nESTQWNIKKNQETINQLREETRVLQLQLTALLQGDEKVVQAVIREWKSEKPYLKNRTGQQ\nALEHLDYRLNEKVKQLNALRHQLGLRQKWLEELQLQHSLRELEIAEAQDSNTEVAKTMRN\nLENRLEKARMKAEEAEHITSVYLQLKAYLQEESLHLGNRLDFMEAEVVRTKHELEELHLV\nNQEALNARDIAKNQLQYLEETVFRERKKRERYLTECKKRAEEKKLQNERMERKTQREHVL\nLQSDDTLQDSMYSKEEELKRRWSMYQMEVLFGKVKDATGVAETHAVVRRFLAQGDTFTQL\nEMLKSENEQTLLRLKQEKQRLQQELEDLKYSGEALLVSEQKRQAELQGRLKMEEQRRADA\nQNQLDRTMRALQITKEGLEHLAGKLNHIVVAGPTYEEGSPGASLDTKGSATPQPQETGRS\nVGKMDPKVDDYLPNLLGLVEEKLLKLHSQLENHNVPEMLRHIVDLEFYATLEGKLPSYNT\nRIALPVAGHKDKFFDEEESEEDDSDVVTRAALKMRSQKLIESRSKRRGRSRRS\n\n\n</pre>"
    },
    "readme": "Name\n   - Bovine Protein Isoform sequences (UniProtKB)\n\nVersion\n   - v-2.11.1\n\nModified on\n   - 2024-10-30T16:52:09.241Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine Protein Isoform sequences (UniProtKB) dataset contains Bos taurus [taxid:9913] protein fasta sequences for the bovine isoform accessions from the UniProtKB database.\n\nDescription Domain\n   Keywords\n   - protein isoform sequences\n   - fasta\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all bovine isoform accessions data from the triplestore containing triples from nt file and extracts it into a dataset in a fasta format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-bos-taurus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_01_31/uniprot-proteome-bos-taurus.nt\n   Output Subdomain\n      Name: bovine_protein_allsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.11.1/reviewed/bovine_protein_allsequences.fasta\n      Name: bovine_protein_allsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.11.1/reviewed/bovine_protein_allsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"51889\"",
    "downloadurl": "/ln2data/releases/data/v-2.11.1/reviewed/bovine_protein_allsequences.fasta"
}