{
    "bcoid": "GLY_000727",
    "title": "Human Protein Biomarkers Citations (Biomarker Database)",
    "description": "Human Protein Biomarkers Citations dataset contains details of the publication present in the dataset ...",
    "filename_list": "human_protein_citations_biomarkers.csv",
    "filename": "human_protein_citations_biomarkers.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Biomarkers Citations (Biomarker Database)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P05231-1...",
                "Serum interl..."
            ],
            [
                "P05231-1...",
                "Clinical cha..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "biomarker_id"
                }
            ],
            [
                "P05231-1",
                "Serum interleukin 6 as a prognostic factor in patients with prostate cancer.",
                "Clinical cancer research : an official journal of the American Association for Cancer Research",
                "2000 Jul",
                "Nakashima J, Tachibana M, Horiguchi Y, Oya M, Ohigashi T, Asakura H, Murai M",
                "protein_xref_pubmed",
                "10914713",
                "protein_xref_biomarkerkb",
                "AN6278-1",
                "AN6278-1"
            ],
            [
                "P05231-1",
                "Clinical characteristics and risk factors associated with COVID-19 disease severity in patients with cancer in Wuhan, China: a multicentre, retrospective, cohort study.",
                "The Lancet. Oncology",
                "2020 Jul",
                "Tian J, Yuan X, Xiao J, Zhong Q, Yang C, Liu B, Cai Y, Lu Z, Wang J, Wang Y, Liu S, Cheng B, Wang J, Zhang M, Wang L, Niu S, Yao Z, Deng X, Zhou F, Wei W, Li Q, Chen X, Chen W, Yang Q, Wu S, Fan J, Shu B, Hu Z, Wang S, Yang XP, Liu W, Miao X, Wang Z",
                "protein_xref_pubmed",
                "32479790",
                "protein_xref_biomarkerkb",
                "AN6278-5",
                "AN6278-5"
            ]
        ]
    },
    "readme": "Name\n   - Human Protein Biomarkers Citations (Biomarker Database)\n\nVersion\n   - v-2.11.1\n\nCreated on\n  - 2023-03-03T02:24:59.574Z\n\nModified on\n   - 2024-05-17T11:24:10.870Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - Human Protein Biomarkers Citations dataset contains details of the publication present in the dataset Human Protein Cancer Biomarkers https://data.glygen.org/GLY_000625\n\nDescription Domain\n   Keywords\n   - Biomarkers\n   - BiomarkerDB\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_protein_biomarkers.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.11.1/reviewed/human_protein_biomarkers.csv\n   Output Subdomain\n      Name: human_protein_citations_biomarkers.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.11.1/reviewed/human_protein_citations_biomarkers.csv\n      Name: human_protein_citations_biomarkers.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.11.1/reviewed/human_protein_citations_biomarkers.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"218\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"290\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"194\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"209\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"290\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"290\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"317\"\n      Name: \"biomarker_id\"\n     Description: \"\"\n      Unique Values: \"317\"",
    "downloadurl": "/ln2data/releases/data/v-2.11.1/reviewed/human_protein_citations_biomarkers.csv"
}