{ "uniprot_canonical_ac": "A0A1D5PL80-1", "uniprot_ac": "A0A1D5PL80", "uniprot_id": "A0A1D5PL80_CHICK", "mass": { "chemical_mass": 45729.0, "monoisotopic_mass": 45729.0 }, "refseq": { "ac": "XP_001232516", "name": "sphingomyelin phosphodiesterase 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001232516" }, "gene_names": [ { "name": "SMPD2", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80", "id": "A0A1D5PL80" }, { "name": "SMPD2", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001232516", "id": "XP_001232516" } ], "protein_names": [ { "name": "Sphingomyelin phosphodiesterase 2", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80/entry#names_and_taxonomy", "id": "A0A1D5PL80" }, { "name": "3.1.4.12", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80/entry#names_and_taxonomy", "id": "A0A1D5PL80" }, { "name": "Lyso-platelet-activating factor-phospholipase C", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80/entry#names_and_taxonomy", "id": "A0A1D5PL80" }, { "name": "Neutral sphingomyelinase", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80/entry#names_and_taxonomy", "id": "A0A1D5PL80" }, { "name": "sphingomyelin phosphodiesterase 2 isoform X2", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001232516", "id": "XP_001232516" } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052557.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_001232516", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001232516" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PL80", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "gene": [ { "name": "SMPD2", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80", "locus": { "chromosome": "26", "start_pos": 77419, "end_pos": 80776, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSGALG00010026854", "url": "https://www.ensembl.org/id/ENSGALG00010026854" } ] } } ], "crossref": [ { "id": "A0A1D5PL80", "url": "https://alphafold.ebi.ac.uk/entry/A0A1D5PL80", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSGALG00000033245", "url": "https://bgee.org/?page=gene&gene_id=ENSGALG00000033245", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "770663", "url": "https://www.ncbi.nlm.nih.gov/gene/770663", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "gga:770663", "url": "https://www.genome.jp/dbget-bin/www_bget?gga:770663", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A1D5PL80", "url": "https://www.orthodb.org/?gene=A0A1D5PL80", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16320", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16320", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16320:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16320:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "R-GGA-5626978", "url": "https://www.reactome.org/PathwayBrowser/#R-GGA-5626978", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-GGA-9840310", "url": "https://www.reactome.org/PathwayBrowser/#R-GGA-9840310", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "XP_001232516", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001232516", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "36087", "url": "https://www.rhea-db.org/rhea/36087", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "39923", "url": "https://www.rhea-db.org/rhea/39923", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "41119", "url": "https://www.rhea-db.org/rhea/41119", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "45296", "url": "https://www.rhea-db.org/rhea/45296", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "45300", "url": "https://www.rhea-db.org/rhea/45300", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A1D5PL80", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1D5PL80-1", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKDPALRLRVFDLNCWAIRYLSKQRQERIRLIGDRLCQEGFDLVLLQEIWSERDYSDLKAKLGGCCPFSHYFRSGVIGSGLCVFSKFPILDTLLYQYSLNGYPYMLQHGDWFCGKSVGLVVVRIAEITFNIYVTHLHAEYSREKDAYLPHRVVQAWELAQFICHTAKAADVVLLGGDLNMHPGDVGVRLLRGWTGLHDAFTEAKHFEGCEDGCTLIPNNCFTVKSELQPFPLGIRIDYILYKAVSSFTVKCEELRTTTGTVPGMDIPYSDHEAVMAMLCIQRRGRAAGATIGTAMPALVEVLSEARTEVCMGLLAARQQRYSSGRMAVLAMLLLLLQAVGVLGVLGGLVAGKPFPTLSFSLLAFLALAILLLAAGLHLFHSIEVKMLQGTKEQMEMAMRGLQEQPLHRH", "length": 410, "header": "tr|A0A1D5PL80-1|A0A1D5PL80_CHICK Isoform 1 of Sphingomyelin phosphodiesterase 2 OS=Gallus gallus OX=9031 GN=SMPD2 PE=3 SV=1 CANONICAL=A0A1D5PL80-1" }, "isoforms": [ { "isoform_ac": "A0A1D5PL80-1", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80/entry#A0A1D5PL80-1", "sequence": { "sequence": "MEKDPALRLRVFDLNCWAIRYLSKQRQERIRLIGDRLCQEGFDLVLLQEIWSERDYSDLKAKLGGCCPFSHYFRSGVIGSGLCVFSKFPILDTLLYQYSLNGYPYMLQHGDWFCGKSVGLVVVRIAEITFNIYVTHLHAEYSREKDAYLPHRVVQAWELAQFICHTAKAADVVLLGGDLNMHPGDVGVRLLRGWTGLHDAFTEAKHFEGCEDGCTLIPNNCFTVKSELQPFPLGIRIDYILYKAVSSFTVKCEELRTTTGTVPGMDIPYSDHEAVMAMLCIQRRGRAAGATIGTAMPALVEVLSEARTEVCMGLLAARQQRYSSGRMAVLAMLLLLLQAVGVLGVLGGLVAGKPFPTLSFSLLAFLALAILLLAAGLHLFHSIEVKMLQGTKEQMEMAMRGLQEQPLHRH", "length": 410, "header": "tr|A0A1D5PL80-1|A0A1D5PL80_CHICK Isoform 1 of Sphingomyelin phosphodiesterase 2 OS=Gallus gallus OX=9031 GN=SMPD2 PE=3 SV=1 CANONICAL=A0A1D5PL80-1" }, "locus": { "chromosome": "26", "start_pos": 80125, "end_pos": 77451, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSGALT00010065144.1", "url": "https://www.ensembl.org/id/ENSGALT00010065144.1" }, { "database": "Ensembl Peptide", "id": "ENSGALP00010039713.1", "url": "https://www.ensembl.org/id/ENSGALP00010039713.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [], "pathway": [ { "id": "gga:770663", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?gga:770663", "resource": "KEGG Pathway" }, { "id": "R-GGA-5626978", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-GGA-5626978", "resource": "Reactome", "description": "TNFR1-mediated ceramide production" }, { "id": "R-GGA-9840310", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-GGA-9840310", "resource": "Reactome", "description": "Glycosphingolipid catabolism" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "sphingolipid catabolic process", "id": "GO:0030149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030149", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PL80", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80" } ], "pmid": "" }, { "name": "ceramide biosynthetic process", "id": "GO:0046513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046513", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PL80", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80" } ], "pmid": "" }, { "name": "sphingomyelin catabolic process", "id": "GO:0006685", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006685", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PL80", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80" } ], "pmid": "" }, { "name": "sphingomyelin metabolic process", "id": "GO:0006684", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006684", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PL80", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PL80", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80" } ], "pmid": "" }, { "name": "cell periphery", "id": "GO:0071944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071944", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PL80", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80" } ], "pmid": "" }, { "name": "caveola", "id": "GO:0005901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005901", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PL80", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "sphingomyelin phosphodiesterase activity", "id": "GO:0004767", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004767", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PL80", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "36087", "name": "", "equation": "1-O-hexadecyl-sn-glycero-3-phosphocholine + H2O = 1-O-hexadecyl-sn-glycerol + phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A1D5PL80-1" ], "evidence": [ { "id": "36087", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/36087" } ] }, { "id": "39923", "name": "", "equation": "1-O-octadecyl-sn-glycero-3-phosphocholine + H2O = 1-O-octadecyl-sn-glycerol + phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A8V0ZSF5-1", "A0A1D5PL80-1" ], "evidence": [ { "id": "39923", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/39923" } ] }, { "id": "41119", "name": "", "equation": "1-hexadecanoyl-sn-glycero-3-phosphocholine + H2O = 1-hexadecanoyl-sn-glycerol + phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A8V0XU85-1", "A0A8V0ZSF5-1", "A0A1D5PL80-1" ], "evidence": [ { "id": "41119", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/41119" } ] }, { "id": "45296", "name": "", "equation": "a sphingosylphosphocholine + H2O = a sphingoid base + phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A8V0ZSF5-1", "A0A1D5PL80-1" ], "evidence": [ { "id": "45296", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/45296" } ] }, { "id": "45300", "name": "", "equation": "an N-(acyl)-sphingosylphosphocholine + H2O = an N-acyl-sphingoid base + phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A8V0ZSF5-1", "A0A1D5PL80-1" ], "evidence": [ { "id": "45300", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/45300" } ] }, { "id": "R-GGA-1606273", "name": "SMPD2 and 3 hydrolyze sphingomyelin (plasma membrane)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [ "R-ALL-429776" ], "output_participant_list": [ "R-ALL-1610735" ], "enzyme_list": [ "A0A1D5PL80-1" ], "evidence": [ { "id": "R-GGA-1606273", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-GGA-1606273" } ] }, { "id": "R-GGA-5626981", "name": "TNF-:TNFR1:NSMAF:GNB2L1 associates with SMPD2,3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A1D5PL80-1" ], "evidence": [ { "id": "R-GGA-5626981", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-GGA-5626981" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-1610735", "participant_name": "ChoP [plasma membrane]", "crossref": [ { "id": "ZINC000001532692", "database": "ZINC", "url": "" }, { "id": "295975", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-429776", "participant_name": "SPHM d18:1 [plasma membrane]", "crossref": [ { "id": "17636", "database": "ChEBI", "url": "" }, { "id": "HMDB0012092", "database": "HMDB Metabolite", "url": "" }, { "id": "HMDB0012089", "database": "HMDB Metabolite", "url": "" }, { "id": "HMDB0012096", "database": "HMDB Metabolite", "url": "" } ] } ], "reaction_enzymes": [ { "uniprot_ac": "A0A1D5PL80", "gene_name": "SMPD2", "activity": [ { "ec_number": "3.1.4.12", "activity": "a sphingomyelin + H2O = phosphocholine + an N-acylsphing-4-enine + H(+).", "evidence": [ { "id": "A0A1D5PL80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80" } ] }, { "ec_number": "3.1.4.12", "activity": "", "evidence": [ { "id": "A0A1D5PL80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PL80" } ] } ] }, { "uniprot_ac": "A0A8V0XU85", "gene_name": "ENPP6", "activity": [ { "ec_number": "3.1.4.38", "activity": "sn-glycerol 3-phosphocholine + H2O = phosphocholine + glycerol + H(+).", "evidence": [ { "id": "A0A8V0XU85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8V0XU85" } ] }, { "ec_number": "3.1.4.38", "activity": "", "evidence": [ { "id": "A0A8V0XU85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8V0XU85" } ] } ] }, { "uniprot_ac": "A0A8V0ZSF5", "gene_name": "SMPD3", "activity": [ { "ec_number": "3.1.4.12", "activity": "a sphingomyelin + H2O = phosphocholine + an N-acylsphing-4-enine + H(+).", "evidence": [ { "id": "A0A8V0ZSF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8V0ZSF5" } ] }, { "ec_number": "3.1.4.12", "activity": "", "evidence": [ { "id": "A0A8V0ZSF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8V0ZSF5" } ] } ] } ], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A1D5PL80-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 410, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A1D5PL80-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/A0A1D5PL80" } ], "synthesized_glycans": [], "enzyme_annotation": [ { "ec_number": "3.1.4.12", "ec_name": "a sphingomyelin + H2O = phosphocholine + an N-acylsphing-4-enine + H(+).", "evidence": [ { "id": "3.1.4.12", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/?query=ec:3.1.4.12" }, { "id": "3.1.4.12", "database": "BRENDA Enzymes", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=3.1.4.12" } ] } ], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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