{ "uniprot_canonical_ac": "A0A0G2JF02-1", "uniprot_ac": "A0A0G2JF02", "uniprot_id": "A0A0G2JF02_MOUSE", "mass": { "chemical_mass": 2151.0, "monoisotopic_mass": 2151.0 }, "refseq": {}, "gene_names": [ { "name": "Traj4", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprotkb/A0A0G2JF02", "id": "A0A0G2JF02" } ], "protein_names": [ { "name": "T cell receptor alpha joining 4", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprotkb/A0A0G2JF02/entry#names_and_taxonomy", "id": "A0A0G2JF02" } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A0A0G2JF02", "url": "https://www.uniprot.org/uniprotkb/A0A0G2JF02" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "gene": [ { "name": "Traj4", "url": "https://www.uniprot.org/uniprotkb/A0A0G2JF02", "locus": { "chromosome": "14", "start_pos": 54453810, "end_pos": 54453748, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSMUSG00000076924", "url": "https://www.ensembl.org/id/ENSMUSG00000076924" } ] } } ], "crossref": [ { "id": "MGI:4439839", "url": "https://alliancegenome.org/gene/MGI:4439839", "database": "AGR", "categories": [ "Protein Classification" ] }, { "id": "ENSMUSG00000076924", "url": "https://bgee.org/?page=gene&gene_id=ENSMUSG00000076924", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "4439839", "url": "http://www.informatics.jax.org/marker/MGI:4439839", "database": "MGI", "categories": [ "Organism-specific" ] }, { "id": "A0A0G2JF02", "url": "https://www.uniprot.org/uniprotkb/A0A0G2JF02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A0G2JF02-1", "url": "https://www.uniprot.org/uniprotkb/A0A0G2JF02-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "XLSGSFNKLTFGAGTRLAVCP", "length": 21, "header": "tr|A0A0G2JF02-1|A0A0G2JF02_MOUSE Isoform 1 of T cell receptor alpha joining 4 OS=Mus musculus OX=10090 GN=Traj4 PE=4 SV=1 CANONICAL=A0A0G2JF02-1" }, "isoforms": [ { "isoform_ac": "A0A0G2JF02-1", "url": "https://www.uniprot.org/uniprotkb/A0A0G2JF02/entry#A0A0G2JF02-1", "sequence": { "sequence": "XLSGSFNKLTFGAGTRLAVCP", "length": 21, "header": "tr|A0A0G2JF02-1|A0A0G2JF02_MOUSE Isoform 1 of T cell receptor alpha joining 4 OS=Mus musculus OX=10090 GN=Traj4 PE=4 SV=1 CANONICAL=A0A0G2JF02-1" }, "locus": { "chromosome": "14", "start_pos": 54453810, "end_pos": 54453748, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSMUST00000103736.2", "url": "https://www.ensembl.org/id/ENSMUST00000103736.2" }, { "database": "Ensembl Peptide", "id": "ENSMUSP00000142969.2", "url": "https://www.ensembl.org/id/ENSMUSP00000142969.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Modernizing reference genome assemblies.", "journal": "PLoS Biol.", "date": "2011", "authors": "Church Deanna M, Schneider Valerie A, Graves Tina, Auger Katherine, Cunningham Fiona, Bouk Nathan, Chen Hsiu-Chuan, Agarwala Richa, McLaren William M, Ritchie Graham R S, Albracht Derek, Kremitzki Milinn, Rock Susan, Kotkiewicz Holland, Kremitzki Colin, Wollam Aye, Trani Lee, Fulton Lucinda, Fulton Robert, Matthews Lucy, Whitehead Siobhan, Chow Will, Torrance James, Dunn Matthew, Harden Glenn, Threadgold Glen, Wood Jonathan, Collins Joanna, Heath Paul, Griffiths Guy, Pelan Sarah, Grafham Darren, Eichler Evan E, Weinstock George, Mardis Elaine R, Wilson Richard K, Howe Kerstin, Flicek Paul, Hubbard Tim", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2JF02", "url": "https://www.uniprot.org/uniprotkb/A0A0G2JF02" } ], "reference": [ { "type": "PubMed", "id": "21750661", "url": "https://glygen.org/publication/PubMed/21750661" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }