{
    "bcoid": "GLY_001465",
    "title": "Chicken Xref iCn3D",
    "description": "The Chicken Xref iCn3D dataset contains Gallus gallus [taxid:9301] UniProtKB canonical accessions cross-referenced ...",
    "filename_list": "chicken_protein_xref_icn3d.csv",
    "filename": "chicken_protein_xref_icn3d.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "iCn3D cross-references"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P23913-1...",
                "protein_xref..."
            ],
            [
                "P20136-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "P23913-1",
                "protein_xref_icn3d",
                "2L8D",
                ""
            ],
            [
                "P20136-1",
                "protein_xref_icn3d",
                "1C72",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Chicken Xref iCn3D\n\nVersion\n   - v-2.10.1\n\nModified on\n   - 2025-10-20T13:44:50.093Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Xref iCn3D dataset contains Gallus gallus [taxid:9301] UniProtKB canonical accessions cross-referenced to PDB database accessions/identifiers in iCn3D. If you use this dataset please provide proper attribution to iCn3D and GlyGen.\n   - The I see in 3D (iCn3D) Structure Viewer is an interactive web-based structure analysis tool which synchronizes the display of 3D structures, 2D interactions, and 1D sequences and annotations.\n\nDescription Domain\n   Keywords\n   - 3D structure\n   - iCn3D\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script extracts the PDB IDs from the input .tsv files and maps it to the corresponding UniProtKB accessions.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-gallus-gallus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_10_01/uniprot-proteome-gallus-gallus.nt\n   Output Subdomain\n      Name: chicken_protein_xref_icn3d.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/chicken_protein_xref_icn3d.csv\n      Name: chicken_protein_xref_icn3d.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/chicken_protein_xref_icn3d.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"258\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"2285\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/chicken_protein_xref_icn3d.csv"
}