{ "bcoid": "GLY_001461", "title": "Human Glycan Tissue Expression TwinsUK", "description": "The Human Glycan Tissue Expression TwinsUK dataset provides glycan tissue expression annotations for ...", "filename_list": "human_proteoform_glycosylation_sites_twinsuk.csv", "filename": "human_proteoform_glycosylation_sites_twinsuk.csv", "filetype": "csv", "categories": { "molecule": [ "Proteoform" ], "tag": [ "Glycan Tissue Expression TwinsUK" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ], "species": [ "Homo sapiens" ] }, "minitable": { "content": [ [ "...", "..." ], [ "...", "..." ] ], "headers": [ "uniprotkb_ca...", "glycosylatio..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glycosylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "glycosylation_type" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "source_tissue_id" }, { "type": "string", "label": "source_tissue_name" }, { "type": "string", "label": "tax_id" }, { "type": "string", "label": "tax_name" }, { "type": "string", "label": "start_pos" }, { "type": "string", "label": "end_pos" }, { "type": "string", "label": "start_aa" }, { "type": "string", "label": "end_aa" }, { "type": "string", "label": "site_seq" }, { "type": "string", "label": "isoform_mapping_notes" } ], [ "", "", "Asn", "G80858MF", "N-linked", "glycan_xref_pubmed", "31747749", "glycan_xref_glygen_ds", "GLY_001461", "UBERON:0001969", "blood plasma", "9606", "Homo sapiens", "", "", "Asn", "Asn", "N", "" ], [ "", "", "Asn", "G30159WR", "N-linked", "glycan_xref_pubmed", "31747749", "glycan_xref_glygen_ds", "GLY_001461", "UBERON:0001969", "blood plasma", "9606", "Homo sapiens", "", "", "Asn", "Asn", "N", "" ] ] }, "readme": "Name\n - Human Glycan Tissue Expression TwinsUK\n\nVersion\n - v-2.10.1\n\nCreated on\n - 2023-03-14T20:00:08.127Z\n\nModified on\n - 2025-09-30T19:14:32.989Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Olga Gornik [olga.gornik@gmail.com], Najda Rudman [najda.rudman@pharma.unizg.hr], Cristina Menni [cristina.menni@kcl.ac.uk], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Human Glycan Tissue Expression TwinsUK dataset provides glycan tissue expression annotations for Homo sapiens [TaxID: 9606]. The data is provided to GlyGen by Dr. Olga Gornik's team from the University of Zagreb through their collaboration with TwinsUK. Further information can be found here: https://twinsuk.ac.uk/.\n\nDescription Domain\n Keywords\n - TwinsUK\n - glycan\n\n Pipeline Steps\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: sample_mapping.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/misc/sample_mapping.csv\n Name: twinsuk_plasma_nglycan_mapping.tsv\n URI: https:/data.glygen.org/ln2downloads/twinsuk/09_24_2025/twinsuk_plasma_nglycan_mapping.tsv\n Output Subdomain\n Name: human_proteoform_glycosylation_sites_twinsuk.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/human_proteoform_glycosylation_sites_twinsuk.csv\n Name: human_proteoform_glycosylation_sites_twinsuk.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/human_proteoform_glycosylation_sites_twinsuk.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"glycosylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where glycosylation is observed\"\n Unique Values: \"1\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"1\"\n Name: \"saccharide\"\n Description: \"Sugar\"\n Unique Values: \"10\"\n Name: \"glycosylation_type\"\n Description: \"Type of glycosylation (N/O/C/S linked glycosylation)\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"1\"\n Name: \"source_tissue_id\"\n Description: \"Tissue ID from GlyConnect\"\n Unique Values: \"1\"\n Name: \"source_tissue_name\"\n Description: \"Tissue NAME from GlyConnect\"\n Unique Values: \"1\"\n Name: \"tax_id\"\n Description: \"NCBI Taxonomy database Identifier\"\n Unique Values: \"1\"\n Name: \"tax_name\"\n Description: \"NCBI Taxonomy name\"\n Unique Values: \"1\"\n Name: \"start_pos\"\n Description: \"Start position of the gene on the chromosome\"\n Unique Values: \"1\"\n Name: \"end_pos\"\n Description: \"End position of the gene on the chromosome\"\n Unique Values: \"1\"\n Name: \"start_aa\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"end_aa\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"site_seq\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"isoform_mapping_notes\"\n Description: \"\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/human_proteoform_glycosylation_sites_twinsuk.csv" }