{
    "bcoid": "GLY_001452",
    "title": "SARS-CoV-2 Protein Citations (IEDB)",
    "description": "The SARS-CoV-2 Protein Citations (IEDB) dataset contains Severe acute respiratory syndrome coronavirus ...",
    "filename_list": "sarscov2_protein_citations_iedb.csv",
    "filename": "sarscov2_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Severe acute respiratory syndrome coronavirus 2"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P0DTC2-1...",
                "Identificati..."
            ],
            [
                "P0DTC2-1...",
                "Immunodomina..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P0DTC2-1",
                "Identification of TCR repertoires in functionally competent cytotoxic T cells cross-reactive to SARS-CoV-2.",
                "Communications biology",
                "2021-12-02",
                "Shimizu Kanako, Iyoda Tomonori, Sanpei An, Nakazato Hiroshi, Okada Masahiro, Ueda Shogo, Kato-Murayama Miyuki, Murayama Kazutaka, Shirouzu Mikako, Harada Naoko, Hidaka Michihiro, Fujii Shin-Ichiro",
                "protein_xref_pubmed",
                "34857854",
                "protein_xref_iedb",
                "1858678"
            ],
            [
                "P0DTC2-1",
                "Immunodominant antibody responses directed to SARS-CoV-2 hotspot mutation sites and risk of immune escape.",
                "Frontiers in immunology",
                "2022",
                "Oliveira Jamille Ramos, Ruiz Cesar Manuel Remuzgo, Machado Rafael Rahal Guaragna, Magawa Jhosiene Yukari, Daher Isabela Pazotti, Urbanski Alysson Henrique, Schmitz Gabriela Justamante H\u00e4ndel, Arcuri Helen Andrade, Ferreira Marcelo Alves, Sasahara Greyce Luri, de Medeiros Giuliana Xavier, J\u00fanior Roberto Carlos Vieira Silva, Durigon Edison Luiz, Boscardin Silvia Beatriz, Rosa Daniela Santoro, Schechtman Deborah, Nakaya Helder I, Cunha-Neto Edecio, Gadermaier Gabriele, Kalil Jorge, Coelho Ver\u00f4nica, Santos Keity Souza",
                "protein_xref_pubmed",
                "36685521",
                "protein_xref_iedb",
                "2187551"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV-2 Protein Citations (IEDB)\n\nVersion\n   - v-2.10.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS-CoV-2 Protein Citations (IEDB) dataset contains Severe acute respiratory syndrome coronavirus 2 [taxid:2697049] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: sarscov2_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/sarscov2_protein_iedb.csv\n   Output Subdomain\n      Name: sarscov2_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/sarscov2_protein_citations_iedb.csv\n      Name: sarscov2_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/sarscov2_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"15\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"191\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"80\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"146\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"191\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"191\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"2688\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/sarscov2_protein_citations_iedb.csv"
}