{
    "bcoid": "GLY_001446",
    "title": "HCV1a Protein Citations (IEDB)",
    "description": "The HCV1a Protein Citations (IEDB) dataset contains Hepatitis C virus (isolate H77) [taxid:63746] UniProtKB ...",
    "filename_list": "hcv1a_protein_citations_iedb.csv",
    "filename": "hcv1a_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Hepatitis C virus (isolate H77)"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P27958-1...",
                "The core dom..."
            ],
            [
                "P27958-1...",
                "High resolut..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P27958-1",
                "The core domain of hepatitis C virus glycoprotein E2 generates potent cross-neutralizing antibodies in guinea pigs.",
                "Hepatology (Baltimore, Md.)",
                "2017-04",
                "Vietheer Patricia T, Boo Irene, Gu Jun, McCaffrey Kathleen, Edwards Stirling, Owczarek Catherine, Hardy Matthew P, Fabri Louis, Center Rob J, Poumbourios Pantelis, Drummer Heidi E",
                "protein_xref_pubmed",
                "27997681",
                "protein_xref_iedb",
                "593598"
            ],
            [
                "P27958-1",
                "High resolution analysis of cellular immune responses in resolved and persistent hepatitis C virus infection.",
                "Gastroenterology",
                "2004-09",
                "Lauer Georg M, Barnes Eleanor, Lucas Michaela, Timm Joerg, Ouchi Kei, Kim Arthur Y, Day Cheryl L, Robbins Gregory K, Casson Deborah R, Reiser Markus, Dusheiko Geoffrey, Allen Todd M, Chung Raymond T, Walker Bruce D, Klenerman Paul",
                "protein_xref_pubmed",
                "15362047",
                "protein_xref_iedb",
                "60059"
            ]
        ]
    },
    "readme": "Name\n   - HCV1a Protein Citations (IEDB)\n\nVersion\n   - v-2.10.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The HCV1a Protein Citations (IEDB) dataset contains Hepatitis C virus (isolate H77) [taxid:63746] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: hcv1a_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/hcv1a_protein_iedb.csv\n   Output Subdomain\n      Name: hcv1a_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/hcv1a_protein_citations_iedb.csv\n      Name: hcv1a_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/hcv1a_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"15\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"12\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"15\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"15\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"15\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"42\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/hcv1a_protein_citations_iedb.csv"
}