{
    "bcoid": "GLY_001435",
    "title": "Zebrafish IEDB epitopes",
    "description": "The Zebrafish epitope IEDB dataset contains Danio rerio [taxid:7955] IEDB epitopes data from the UniProt ...",
    "filename_list": "zebrafish_protein_iedb.csv",
    "filename": "zebrafish_protein_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Danio rerio"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "IEDB epitopes"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "F1QDF8-1...",
                "1863112..."
            ],
            [
                "O73784-1...",
                "1863749..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "iedb_id..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "iedb_id"
                },
                {
                    "type": "string",
                    "label": "epitope_peptide"
                },
                {
                    "type": "string",
                    "label": "epitope_description"
                },
                {
                    "type": "string",
                    "label": "evidence_code"
                },
                {
                    "type": "string",
                    "label": "epitope_start_pos"
                },
                {
                    "type": "string",
                    "label": "epitope_end_pos"
                },
                {
                    "type": "string",
                    "label": "epitope_start_aa"
                },
                {
                    "type": "string",
                    "label": "epitope_end_aa"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "F1QDF8-1",
                "1863112",
                "EEATSADQNW",
                "EEATSADQNW is a linear peptidic epitope (epitope ID 1863112) tested in 24 B cell assays.",
                "ECO:0000213",
                "277",
                "286",
                "E",
                "W",
                "protein_xref_pubmed",
                "33109704",
                "protein_xref_iedb",
                "1863112"
            ],
            [
                "O73784-1",
                "1863749",
                "SSTVAPKQSS",
                "SSTVAPKQSS is a linear peptidic epitope (epitope ID 1863749) tested in 21 B cell assays.",
                "ECO:0000213",
                "61",
                "70",
                "S",
                "S",
                "protein_xref_pubmed",
                "33109704",
                "protein_xref_iedb",
                "1863749"
            ]
        ]
    },
    "readme": "Name\n   - Zebrafish IEDB epitopes\n\nVersion\n   - v-2.10.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Zebrafish epitope IEDB dataset contains Danio rerio [taxid:7955] IEDB epitopes data from the UniProt Proteins Epitope REST API (www.ebi.ac.uk/proteins/api). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - Epitope\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script extracts the epitope data from the input file and maps the UniProtKB accession to the UniProtKB canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/compiled/all_blacklisted_pmids.csv\n      Name: IEDB-danio-rerio.tsv\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_10_01/IEDB-danio-rerio.tsv\n   Output Subdomain\n      Name: zebrafish_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/zebrafish_protein_iedb.csv\n      Name: zebrafish_protein_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/zebrafish_protein_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"3\"\n      Name: \"iedb_id\"\n     Description: \"\"\n      Unique Values: \"3\"\n      Name: \"epitope_peptide\"\n     Description: \"\"\n      Unique Values: \"3\"\n      Name: \"epitope_description\"\n     Description: \"\"\n      Unique Values: \"3\"\n      Name: \"evidence_code\"\n     Description: \"eco_id\"\n      Unique Values: \"1\"\n      Name: \"epitope_start_pos\"\n     Description: \"\"\n      Unique Values: \"3\"\n      Name: \"epitope_end_pos\"\n     Description: \"\"\n      Unique Values: \"3\"\n      Name: \"epitope_start_aa\"\n     Description: \"\"\n      Unique Values: \"3\"\n      Name: \"epitope_end_aa\"\n     Description: \"\"\n      Unique Values: \"3\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"2\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"3\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/zebrafish_protein_iedb.csv"
}