{
    "bcoid": "GLY_001393",
    "title": "Zebrafish Glycan TableMaker Citations",
    "description": "The Zebrafish Glycan Tissue Expression TableMaker Citations dataset provides citation information for ...",
    "filename_list": "zebrafish_proteoform_citations_glycosylation_sites_tablemaker.csv",
    "filename": "zebrafish_proteoform_citations_glycosylation_sites_tablemaker.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Glycan Tissue Expression TableMaker Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Danio rerio"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q568N9-1...",
                "Reduction in..."
            ],
            [
                "Q568N9-1...",
                "Reduction in..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "Q568N9-1",
                "Reduction in N-Acetylglucosaminyltransferase-I Activity Decreases Survivability and Delays Development of Zebrafish.",
                "Current issues in molecular biology",
                "2023-11-15",
                "Hall M Kristen, Hatchett Cody J, Shalygin Sergei, Azadi Parastoo, Schwalbe Ruth A",
                "glycan_xref_pubmed",
                "37998752",
                "glycan_xref_tablemaker",
                "G72404VA",
                "G72404VA"
            ],
            [
                "Q568N9-1",
                "Reduction in N-Acetylglucosaminyltransferase-I Activity Decreases Survivability and Delays Development of Zebrafish.",
                "Current issues in molecular biology",
                "2023-11-15",
                "Hall M Kristen, Hatchett Cody J, Shalygin Sergei, Azadi Parastoo, Schwalbe Ruth A",
                "glycan_xref_pubmed",
                "37998752",
                "glycan_xref_tablemaker",
                "G27944BD",
                "G27944BD"
            ]
        ]
    },
    "readme": "Name\n   - Zebrafish Glycan TableMaker Citations\n\nVersion\n   - v-2.10.1\n\nCreated on\n  - 2023-03-14T20:00:08.127Z\n\nModified on\n   - 2025-03-04T15:53:49.509Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Dan Lyman [danlyman@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Zebrafish Glycan Tissue Expression TableMaker Citations dataset provides citation information for glycan tissue expression annotations for Danio rerio [TaxID: 7955], based on a study using CRISPR/Cas9 to knock down GnT-Ib activity and assess the effects of reduced complex N-glycans on survival, development, and sensory-motor functions [PMID: 37998752]. Annotated by the TableMaker team, this dataset is available through GlyGen. More details: https://glygen.ccrc.uga.edu/tablemaker/data/dataset/TD1127346.\n\nDescription Domain\n   Keywords\n   - TableMaker\n   - glycan\n   - Citations\n\n   Pipeline Steps\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/compiled/all_blacklisted_pmids.csv\n      Name: zebrafish_proteoform_glycosylation_sites_tablemaker.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/zebrafish_proteoform_glycosylation_sites_tablemaker.csv\n   Output Subdomain\n      Name: zebrafish_proteoform_citations_glycosylation_sites_tablemaker.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/zebrafish_proteoform_citations_glycosylation_sites_tablemaker.csv\n      Name: zebrafish_proteoform_citations_glycosylation_sites_tablemaker.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/zebrafish_proteoform_citations_glycosylation_sites_tablemaker.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"1\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"1\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"51\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"51\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/zebrafish_proteoform_citations_glycosylation_sites_tablemaker.csv"
}