{
    "bcoid": "GLY_001218",
    "title": "Bovine Reaction Participants (Reactome)",
    "description": "The Bovine Protein Reaction Participants (Reactome) dataset contains reactions participants information ...",
    "filename_list": "bovine_protein_participants_reactome.csv",
    "filename": "bovine_protein_participants_reactome.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Reaction Participants (Reactome)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "R-BTA-77327...",
                "R-ALL-77326..."
            ],
            [
                "R-BTA-77327...",
                "R-ALL-77326..."
            ]
        ],
        "headers": [
            "reaction_id...",
            "participant_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "reaction_id"
                },
                {
                    "type": "string",
                    "label": "participant_id"
                },
                {
                    "type": "string",
                    "label": "participant_name"
                },
                {
                    "type": "string",
                    "label": "role"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_type"
                }
            ],
            [
                "R-BTA-77327",
                "R-ALL-77326",
                "HX-CoA [mitochondrial matrix]",
                "input",
                "62620",
                "ChEBI"
            ],
            [
                "R-BTA-77327",
                "R-ALL-77326",
                "HX-CoA [mitochondrial matrix]",
                "input",
                "ZINC000008551760",
                "ZINC"
            ]
        ]
    },
    "readme": "Name\n   - Bovine Reaction Participants (Reactome)\n\nVersion\n   - v-2.10.1\n\nCreated on\n  - 2024-11-04T16:13:01\n\nModified on\n   - 2024-11-04T16:15:22.305Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine Protein Reaction Participants (Reactome) dataset contains reactions participants information for pathways for Bos taurus [taxid:9913] UniProtKB accessions that includes reaction IDs, participant ID, participant name, role, xref ID etc from Reactome database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB, Reactome and GlyGen.\n\nDescription Domain\n   Keywords\n   - Reactome\n   - Participant\n\n   Pipeline Steps\n   - Step-1: The script loads the Reactome participant data from the triplestore containing triples from nt file to retrieve the information extracts the dataset in the csv format.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: database_accession.tsv\n      URI: https:/data.glygen.org/ln2downloads/chebi/2025_09_18/database_accession.tsv\n      Name: uniprot-proteome-bos-taurus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_10_01/uniprot-proteome-bos-taurus.nt\n   Output Subdomain\n      Name: bovine_protein_participants_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/bovine_protein_participants_reactome.csv\n      Name: bovine_protein_participants_reactome.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/bovine_protein_participants_reactome.stat.csv\n\nFields\n      Name: \"reaction_id\"\n     Description: \"The identifier assigned to a reaction in Reactome database\"\n      Unique Values: \"6221\"\n      Name: \"participant_id\"\n     Description: \"\"\n      Unique Values: \"5851\"\n      Name: \"participant_name\"\n     Description: \"\"\n      Unique Values: \"3118\"\n      Name: \"role\"\n     Description: \"\"\n      Unique Values: \"3\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"10121\"\n      Name: \"xref_type\"\n     Description: \"\"\n      Unique Values: \"34\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/bovine_protein_participants_reactome.csv"
}