{
    "bcoid": "GLY_001178",
    "title": "Bovine Phosphorylation Sites (iPTMNet)",
    "description": "The Bovine Phosphorylation Sites (iPTMNet) dataset contains Bos taurus [taxid:9913] phosphorylation sites ...",
    "filename_list": "bovine_proteoform_phosphorylation_sites_iptmnet.csv",
    "filename": "bovine_proteoform_phosphorylation_sites_iptmnet.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Sites (iPTMnet)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P08487-1...",
                "771..."
            ],
            [
                "P08487-1...",
                "771..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "phosphorylat..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "phosphorylation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "kinase_uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "kinase_gene_name"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "P08487-1",
                "771",
                "Tyr",
                "",
                "",
                "protein_xref_intact",
                "P08487",
                "protein_xref_iptmnet",
                "P08487",
                ""
            ],
            [
                "P08487-1",
                "771",
                "Tyr",
                "",
                "",
                "protein_xref_iptmnet",
                "P08487",
                "protein_xref_iptmnet",
                "P08487",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Bovine Phosphorylation Sites (iPTMNet)\n\nVersion\n   - v-2.10.1\n\nCreated on\n  - 2020-08-17T16:43:14.212000\n\nModified on\n   - 2024-12-01T23:37:18.421Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine Phosphorylation Sites (iPTMNet) dataset contains Bos taurus [taxid:9913] phosphorylation sites from iPTMNet database. The protein and sites are mapped to UniProtKB canonical accessions and fasta sequence. If you use this dataset please provide proper attribution to iPTMnet-GlyGen.\n\nDescription Domain\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/compiled/all_blacklisted_pmids.csv\n      Name: bovine_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/bovine_protein_masterlist.csv\n      Name: ptm.txt\n      URI: https:/data.glygen.org/ln2downloads/iptmnet/2025_10_14/ptm.txt\n   Output Subdomain\n      Name: bovine_proteoform_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/bovine_proteoform_phosphorylation_sites_iptmnet.csv\n      Name: bovine_proteoform_phosphorylation_sites_iptmnet.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/bovine_proteoform_phosphorylation_sites_iptmnet.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"88\"\n      Name: \"phosphorylation_site_uniprotkb\"\n     Description: \"Site on the protein sequence of the UniProtKB entry where phosphorylation is observed\"\n      Unique Values: \"226\"\n      Name: \"amino_acid\"\n     Description: \"Three letter abbreviation code of the amino acid\"\n      Unique Values: \"3\"\n      Name: \"kinase_uniprotkb_canonical_ac\"\n     Description: \"The UniProtKB canonical accession for the kinase enzyme that is phosphorylating the protein\"\n      Unique Values: \"6\"\n      Name: \"kinase_gene_name\"\n     Description: \"\"\n      Unique Values: \"6\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"7\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"236\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"89\"\n      Name: \"isoform_mapping_notes\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/bovine_proteoform_phosphorylation_sites_iptmnet.csv"
}