{
    "bcoid": "GLY_001173",
    "title": "Bovine Glycation Sites (UniProtKB)",
    "description": "The Bovine Glycation Sites (UniProtKB) dataset contains Bos taurus [taxid:9913] UniProtKB canonical accessions ...",
    "filename_list": "bovine_proteoform_glycation_sites_uniprotkb.csv",
    "filename": "bovine_proteoform_glycation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Glycation Sites (UniProtKB)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P02522-1...",
                "140..."
            ],
            [
                "P02522-1...",
                "140..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "glycation_si..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "glycation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "saccharide"
                },
                {
                    "type": "string",
                    "label": "glycation_type"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_glycation_annotation_comment"
                },
                {
                    "type": "string",
                    "label": "data_source"
                },
                {
                    "type": "string",
                    "label": "eco_id"
                },
                {
                    "type": "string",
                    "label": "carb_name"
                }
            ],
            [
                "P02522-1",
                "140",
                "Lys",
                "",
                "n-linked",
                "protein_xref_uniprotkb_gly",
                "P02522",
                "protein_xref_uniprotkb_gly",
                "P02522",
                "N-linked (Glc) (glycation) lysine",
                "PubMed",
                "ECO_0000269",
                "Glc"
            ],
            [
                "P02522-1",
                "140",
                "Lys",
                "",
                "n-linked",
                "protein_xref_pubmed",
                "8954094",
                "protein_xref_uniprotkb_gly",
                "P02522",
                "N-linked (Glc) (glycation) lysine",
                "PubMed",
                "ECO_0000269",
                "Glc"
            ]
        ]
    },
    "readme": "Name\n   - Bovine Glycation Sites (UniProtKB)\n\nVersion\n   - v-2.10.1\n\nCreated on\n  - 2020-08-17T17:02:18.395740\n\nModified on\n   - 2024-12-10T20:13:04.456Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine Glycation Sites (UniProtKB) dataset contains Bos taurus [taxid:9913] UniProtKB canonical accessions with information on reported and predicted glycation sites from the UniProtKB database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - UniProtKB\n   - PubMed\n   - Evidence and conclusion Ontology\n   - glycation\n   - reported glycation \n   - predicted glycation \n   - glycosylation\n\n   Pipeline Steps\n   - Step-1: The script loads the glycation information from the triplestore containing triples from the nt file and extracts as a csv dataset. \n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-bos-taurus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_10_01/uniprot-proteome-bos-taurus.nt\n   Output Subdomain\n      Name: bovine_proteoform_glycation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/bovine_proteoform_glycation_sites_uniprotkb.csv\n      Name: bovine_proteoform_glycation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/bovine_proteoform_glycation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"8\"\n      Name: \"glycation_site_uniprotkb\"\n     Description: \"\"\n      Unique Values: \"25\"\n      Name: \"amino_acid\"\n     Description: \"Three letter abbreviation code of the amino acid\"\n      Unique Values: \"1\"\n      Name: \"saccharide\"\n     Description: \"Sugar\"\n      Unique Values: \"1\"\n      Name: \"glycation_type\"\n     Description: \"Site on the protein sequence of the UniProtKB entry where glycation is observed\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"2\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"14\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"8\"\n      Name: \"uniprotkb_glycation_annotation_comment\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"data_source\"\n     Description: \"The source database for the data\"\n      Unique Values: \"2\"\n      Name: \"eco_id\"\n     Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n      Unique Values: \"2\"\n      Name: \"carb_name\"\n     Description: \"carbohydrate name\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/bovine_proteoform_glycation_sites_uniprotkb.csv"
}