{
    "bcoid": "GLY_001114",
    "title": "Mouse Glycosylation Sites (CarbBank)",
    "description": "The Mouse CarbBank Glycosylation Sites dataset contains information on Mus musculus [taxid:10090] glycan ...",
    "filename_list": "mouse_proteoform_glycosylation_sites_carbbank.csv",
    "filename": "mouse_proteoform_glycosylation_sites_carbbank.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Glycosylation Sites"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q3UD01-1...",
                "..."
            ],
            [
                "Q3UD01-1...",
                "..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "glycosylatio..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "glycosylation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "saccharide"
                },
                {
                    "type": "string",
                    "label": "glycosylation_type"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "start_aa"
                },
                {
                    "type": "string",
                    "label": "end_aa"
                }
            ],
            [
                "Q3UD01-1",
                "",
                "",
                "G62223BD",
                "N-linked",
                "protein_xref_pubmed",
                "7496147",
                "protein_xref_glygen_ds",
                "GLY_001114",
                "",
                "",
                "",
                ""
            ],
            [
                "Q3UD01-1",
                "",
                "",
                "G99229VQ",
                "N-linked",
                "protein_xref_pubmed",
                "7496147",
                "protein_xref_glygen_ds",
                "GLY_001114",
                "",
                "",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Mouse Glycosylation Sites (CarbBank)\n\nVersion\n   - v-2.10.1\n\nCreated on\n  - 2024-12-10T21:01:50\n\nModified on\n   - 2024-12-10T21:44:26.970Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse CarbBank Glycosylation Sites dataset contains information on Mus musculus [taxid:10090] glycan and glycosylation sites mapped to the UniProtKB canonical accessions derived from the CarbBank resource. CarbBank was a pioneering database that cataloged carbohydrate structures and related biochemical information. Although no longer actively maintained, CarbBank laid the groundwork for modern glycoinformatics tools and databases, influencing subsequent efforts to document carbohydrate-related data systematically. Please cite GlyGen and CarbBank if you use this dataset.\n\nDescription Domain\n   Keywords\n   - glycosylation\n   - reported glycosylation\n   - Carbbank\n\n   Pipeline Steps\n   - Step-1: The script performs QC steps and creates a proteoform dataset according to the GlyGen data model.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: mouse_proteoform_glycosylation_sites_carbbank.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/compiled/mouse_proteoform_glycosylation_sites_carbbank.csv\n   Output Subdomain\n      Name: mouse_proteoform_glycosylation_sites_carbbank.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/mouse_proteoform_glycosylation_sites_carbbank.csv\n      Name: mouse_proteoform_glycosylation_sites_carbbank.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/mouse_proteoform_glycosylation_sites_carbbank.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"glycosylation_site_uniprotkb\"\n     Description: \"Site on the protein sequence of the UniProtKB entry where glycosylation is observed\"\n      Unique Values: \"1\"\n      Name: \"amino_acid\"\n     Description: \"Three letter abbreviation code of the amino acid\"\n      Unique Values: \"1\"\n      Name: \"saccharide\"\n     Description: \"Sugar\"\n      Unique Values: \"26\"\n      Name: \"glycosylation_type\"\n     Description: \"Type of glycosylation (N/O/C/S linked glycosylation)\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"\n      Name: \"start_pos\"\n     Description: \"Start position of the gene on the chromosome\"\n      Unique Values: \"1\"\n      Name: \"end_pos\"\n     Description: \"End position of the gene on the chromosome\"\n      Unique Values: \"1\"\n      Name: \"start_aa\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"end_aa\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/mouse_proteoform_glycosylation_sites_carbbank.csv"
}