{
    "bcoid": "GLY_001029",
    "title": "Chicken Protein Enzyme Annotation (UniProtKB)",
    "description": "The Chicken Protein Enzyme Annotation (UniProtKB) dataset contains Gallus gallus [taxid:9031] enzyme ...",
    "filename_list": "chicken_protein_enzyme_annotation_uniprotkb.csv",
    "filename": "chicken_protein_enzyme_annotation_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "enzyme annotation"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "F1NQJ6-1...",
                "3.4.19.12..."
            ],
            [
                "F1NQJ6-1...",
                "3.4.19.12..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "enzyme_ec..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "enzyme_ec"
                },
                {
                    "type": "string",
                    "label": "enzyme_activity"
                }
            ],
            [
                "F1NQJ6-1",
                "3.4.19.12",
                "Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal)."
            ],
            [
                "F1NQJ6-1",
                "3.4.19.12",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Chicken Protein Enzyme Annotation (UniProtKB)\n\nVersion\n   - v-2.10.1\n\nModified on\n   - 2024-05-21T14:49:34.499Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Protein Enzyme Annotation (UniProtKB) dataset contains Gallus gallus [taxid:9031] enzyme annotations for UniProtKB canonical accessions. The dataset contains ec numbers and enzyme activity that describes the enzymatic reactions. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - enzyme annotation\n   - enzyme \n   - UniProtKB\n   - enzyme activity\n   - EC number\n\n   Pipeline Steps\n   - Step-1: The script extracts the enzyme annotation triples from the triplestore for the UniProtKB canonical sequnces asnd extracts as a dataset in a csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-gallus-gallus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_10_01/uniprot-proteome-gallus-gallus.nt\n   Output Subdomain\n      Name: chicken_protein_enzyme_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/chicken_protein_enzyme_annotation_uniprotkb.csv\n      Name: chicken_protein_enzyme_annotation_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/chicken_protein_enzyme_annotation_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"3400\"\n      Name: \"enzyme_ec\"\n     Description: \"Enzyme Commision number assigned to an enzyme by Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n      Unique Values: \"1213\"\n      Name: \"enzyme_activity\"\n     Description: \"The catalytic reaction activity of an enzyme in UniProtKB\"\n      Unique Values: \"1111\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/chicken_protein_enzyme_annotation_uniprotkb.csv"
}