{
    "bcoid": "GLY_001028",
    "title": "Chicken Protein Citations (Reactome)",
    "description": "The Chicken Protein Reactions (Reactome) dataset contains reactions information for pathways for Gallus ...",
    "filename_list": "chicken_protein_citations_reactome.csv",
    "filename": "chicken_protein_citations_reactome.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Reactions Reactome"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A8V1A8R6-1...",
                "Factor I-dep..."
            ],
            [
                "A0A8V0YEL1-1...",
                "Factor I-dep..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A0A8V1A8R6-1",
                "Factor I-dependent inactivation of human complement C4b of the classical pathway by C3b/C4b receptor (CR1, CD35) and membrane cofactor protein (MCP, CD46).",
                "Journal of biochemistry",
                "1992 May",
                "Masaki T, Matsumoto M, Nakanishi I, Yasuda R, Seya T",
                "protein_xref_pubmed",
                "1386357",
                "protein_xref_reactome",
                "R-GGA-2132281"
            ],
            [
                "A0A8V0YEL1-1",
                "Factor I-dependent inactivation of human complement C4b of the classical pathway by C3b/C4b receptor (CR1, CD35) and membrane cofactor protein (MCP, CD46).",
                "Journal of biochemistry",
                "1992 May",
                "Masaki T, Matsumoto M, Nakanishi I, Yasuda R, Seya T",
                "protein_xref_pubmed",
                "1386357",
                "protein_xref_reactome",
                "R-GGA-2132281"
            ]
        ]
    },
    "readme": "Name\n   - Chicken Protein Citations (Reactome)\n\nVersion\n   - v-2.10.1\n\nModified on\n   - 2024-05-21T14:50:00.047Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Protein Reactions (Reactome) dataset contains reactions information for pathways for Gallus gallus [taxid:9031] UniProtKB accessions that includes reaction participants, pathway ID, reaction ID, PMID etc from Reactome database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - Reactome\n   - Pathway\n   - Reactions\n   - PMID\n\n   Pipeline Steps\n   - Step-1: The script loads the Reactome reaction data from the triplestore containing triples from nt file to retrieve the information associated with the Reactome IDs and maps it to the UniProtKB canonical accessions and extracts the dataset in the csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/compiled/all_blacklisted_pmids.csv\n      Name: chicken_protein_reactions_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/chicken_protein_reactions_reactome.csv\n      Name: chicken_protein_xref_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/chicken_protein_xref_reactome.csv\n   Output Subdomain\n      Name: chicken_protein_citations_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/chicken_protein_citations_reactome.csv\n      Name: chicken_protein_citations_reactome.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/chicken_protein_citations_reactome.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"110\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"180\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"55\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"174\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"179\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"180\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"54\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/chicken_protein_citations_reactome.csv"
}