{
    "bcoid": "GLY_001010",
    "title": "Chicken Protein Citations (RefSeq)",
    "description": "The Chicken Protein Citations (RefSeq) datasets contains Gallus gallus [taxid:9031] UniProtKB accessions ...",
    "filename_list": "chicken_protein_citations_refseq.csv",
    "filename": "chicken_protein_citations_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "O93277-1...",
                "WDR1 express..."
            ],
            [
                "Q6XBN6-1...",
                "The early is..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "O93277-1",
                "WDR1 expression in the normal and noise-damaged chick vestibule.",
                "Journal of vestibular research : equilibrium & orientation",
                "2007",
                "Suh Myung Whan, Shin Dong Hoon, Lee Ho Sun, Park Ji Yeong, Kim Chong Sun, Oh Seung Ha",
                "protein_xref_pubmed",
                "18525142",
                "protein_xref_refseq",
                "NP_001004402"
            ],
            [
                "Q6XBN6-1",
                "The early isoform of disabled-1 functions independently of Reelin-mediated tyrosine phosphorylation in chick retina.",
                "Molecular and cellular biology",
                "2010-09",
                "Gao Zhihua, Monckton Elizabeth A, Glubrecht Darryl D, Logan Cairine, Godbout Roseline",
                "protein_xref_pubmed",
                "20606009",
                "protein_xref_refseq",
                "NP_989569"
            ]
        ]
    },
    "readme": "Name\n   - Chicken Protein Citations (RefSeq)\n\nVersion\n   - v-2.10.1\n\nCreated on\n  - 2019-09-06T14:06:38.983152\n\nModified on\n   - 2024-05-21T14:12:55.301Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Protein Citations (RefSeq) datasets contains Gallus gallus [taxid:9031] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors of corresponding RefSeq accessions). If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - RefSeq\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accessions to the UniProtKB Canonical accessions. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/compiled/all_blacklisted_pmids.csv\n      Name: chicken_protein_function_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/chicken_protein_function_refseq.csv\n   Output Subdomain\n      Name: chicken_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/chicken_protein_citations_refseq.csv\n      Name: chicken_protein_citations_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/chicken_protein_citations_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1148\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"2103\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"432\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1057\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"2083\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"2103\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1148\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/chicken_protein_citations_refseq.csv"
}