{
    "bcoid": "GLY_000950",
    "title": "Pig Proteome Masterlist (UniProtKB)",
    "description": "The Pig Proteome Masterlist dataset contains Sus scrofa [taxid:9823] UniProtKB canonical accessions mapped ...",
    "filename_list": "pig_protein_masterlist.csv",
    "filename": "pig_protein_masterlist.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Sus scrofa"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Canonical Accessions"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A8W4F999-1...",
                "unreviewed..."
            ],
            [
                "A0A8W4F992-1...",
                "unreviewed..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "status..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "status"
                },
                {
                    "type": "string",
                    "label": "gene_name"
                },
                {
                    "type": "string",
                    "label": "reviewed_isoforms"
                },
                {
                    "type": "string",
                    "label": "unreviewed_isoforms"
                }
            ],
            [
                "A0A8W4F999-1",
                "unreviewed",
                "",
                "",
                "A0A8W4F999-1"
            ],
            [
                "A0A8W4F992-1",
                "unreviewed",
                "ZNF446",
                "",
                "A0A8W4F992-1"
            ]
        ]
    },
    "readme": "Name\n   - Pig Proteome Masterlist (UniProtKB)\n\nVersion\n   - v-2.10.1\n\nModified on\n   - 2024-06-03T20:31:26.641Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Pig Proteome Masterlist dataset contains Sus scrofa [taxid:9823] UniProtKB canonical accessions mapped to the reviewed (SwissProt) and unreviewed (TrEMBL) UniProtKB isoforms via gene grouping. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - canonical accessions\n   - gene name\n   - protein isoforms\n   - complete proteome\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB proteome data from the triplestore containing triples from nt file to map UniProtKB canonical accessions to reviewed and unreviewed isoforms via gene grouping\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sus-scrofa.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_10_01/uniprot-proteome-sus-scrofa.nt\n   Output Subdomain\n      Name: pig_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/pig_protein_masterlist.csv\n      Name: pig_protein_masterlist.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/pig_protein_masterlist.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"22804\"\n      Name: \"status\"\n     Description: \"Status of the protein record in UniProtKB database that can be reviewed for UniProtKB/Swiss-Prot entry or unreviewed for UniProtKB/TrEMBL entry\"\n      Unique Values: \"2\"\n      Name: \"gene_name\"\n     Description: \"\"Official gene name/symbol assigned to the gene. Human gene name/symbol are approved by the HUGO Gene Nomenclature Committee (HGNC) and mouse gene name are approved by the Mouse Genome Informatics (MGI)\"\n      Unique Values: \"18643\"\n      Name: \"reviewed_isoforms\"\n     Description: \"\"Protein records from UniProtKB/SwissProt database that have been manually curated and annotated based on experimental results\"\n      Unique Values: \"1535\"\n      Name: \"unreviewed_isoforms\"\n     Description: \"Protein records from UniProtKB/TrEMBL database that have been computationally annotated\"\n      Unique Values: \"44553\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/pig_protein_masterlist.csv"
}