{
    "bcoid": "GLY_000732",
    "title": "Human Proteoform Glycomics Study Citations (UniCarbKB)",
    "description": "The dataset contains publication information of the PMIDs present in the Human Glycosylation Sites UniCarbKB ...",
    "filename_list": "human_proteoform_citations_glycosylation_sites_unicarbkb_glycomics_study.csv",
    "filename": "human_proteoform_citations_glycosylation_sites_unicarbkb_glycomics_study.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "UniCarbKB glycosylation sites glycomics study citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "...",
                "The O-Glycom..."
            ],
            [
                "...",
                "The O-Glycom..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "",
                "The O-Glycome of Human Nigrostriatal Tissue and Its Alteration in Parkinson's Disease.",
                "Journal of proteome research",
                "2021 Aug 6",
                "Wilkinson H, Thomsson KA, Rebelo AL, Hilliard M, Pandit A, Rudd PM, Karlsson NG, Saldova R",
                "protein_xref_pubmed",
                "34191522",
                "protein_xref_unicarbkb_ds",
                "GLY_000611",
                "G32977PZ"
            ],
            [
                "",
                "The O-Glycome of Human Nigrostriatal Tissue and Its Alteration in Parkinson's Disease.",
                "Journal of proteome research",
                "2021 Aug 6",
                "Wilkinson H, Thomsson KA, Rebelo AL, Hilliard M, Pandit A, Rudd PM, Karlsson NG, Saldova R",
                "protein_xref_pubmed",
                "34191522",
                "protein_xref_unicarbkb_ds",
                "GLY_000611",
                "G41866GK"
            ]
        ]
    },
    "readme": "Name\n   - Human Proteoform Glycomics Study Citations (UniCarbKB)\n\nVersion\n   - v-2.10.1\n\nCreated on\n  - 2023-03-10T03:38:12.646Z\n\nModified on\n   - 2024-05-17T11:24:11.068Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Matthew Campbell [m.campbell2@griffith.edu.au]\n\nChecksum\n   - \n\nUsability Domain\n   - The dataset contains publication information of the PMIDs present in the Human Glycosylation Sites UniCarbKB Glycomics Study dataset (https://data.glygen.org/GLY_000611).\n\nDescription Domain\n   Keywords\n   - Publications\n   - Citations\n   - PubMed\n   - glycomics\n   - UniCarbKB\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMIDs from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/compiled/all_blacklisted_pmids.csv\n      Name: human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n   Output Subdomain\n      Name: human_proteoform_citations_glycosylation_sites_unicarbkb_glycomics_study.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/human_proteoform_citations_glycosylation_sites_unicarbkb_glycomics_study.csv\n      Name: human_proteoform_citations_glycosylation_sites_unicarbkb_glycomics_study.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/human_proteoform_citations_glycosylation_sites_unicarbkb_glycomics_study.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"2\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"2\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"2\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"2\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"2\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"72\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/human_proteoform_citations_glycosylation_sites_unicarbkb_glycomics_study.csv"
}