{
    "bcoid": "GLY_000721",
    "title": "Human Somatic Mutation Citations",
    "description": "The Human Somatic Mutation Citations contains details of the publication present in the dataset Human ...",
    "filename_list": "human_protein_citations_mutation_somatic.csv",
    "filename": "human_protein_citations_mutation_somatic.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Somatic Mutation Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P82279-1...",
                "Mutations in..."
            ],
            [
                "P04637-1...",
                "Clonal p53 m..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P82279-1",
                "Mutations in a human homologue of Drosophila crumbs cause retinitis pigmentosa (RP12).",
                "Nature genetics",
                "1999 Oct",
                "den Hollander AI, ten Brink JB, de Kok YJ, van Soest S, van den Born LI, van Driel MA, van de Pol DJ, Payne AM, Bhattacharya SS, Kellner U, Hoyng CB, Westerveld A, Brunner HG, Bleeker-Wagemakers EM, Deutman AF, Heckenlively JR, Cremers FP, Bergen AA",
                "protein_xref_pubmed",
                "10508521",
                "protein_xref_dbsnp",
                "rs28939720"
            ],
            [
                "P04637-1",
                "Clonal p53 mutation in primary cervical cancer: association with human-papillomavirus-negative tumours.",
                "Lancet (London, England)",
                "1992 May 2",
                "Crook T, Wrede D, Tidy JA, Mason WP, Evans DJ, Vousden KH",
                "protein_xref_pubmed",
                "1349102",
                "protein_xref_dbsnp",
                "rs28934571"
            ]
        ]
    },
    "readme": "Name\n   - Human Somatic Mutation Citations\n\nVersion\n   - v-2.10.1\n\nCreated on\n  - \n\nModified on\n   - 2024-05-17T11:24:10.644Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Human Somatic Mutation Citations contains details of the publication present in the dataset Human Somatic Mutation https://data.glygen.org/GLY_000462.\n\nDescription Domain\n   Keywords\n   - Somatic\n   - Mutation\n   - Publications\n   - Citations\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_protein_mutation_somatic.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/human_protein_mutation_somatic.csv\n   Output Subdomain\n      Name: human_protein_citations_mutation_somatic.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/human_protein_citations_mutation_somatic.csv\n      Name: human_protein_citations_mutation_somatic.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/human_protein_citations_mutation_somatic.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"49\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"112\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"55\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"105\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"112\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"112\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"53\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/human_protein_citations_mutation_somatic.csv"
}