{
    "bcoid": "GLY_000608",
    "title": "Mouse Proteoform Phosphorylation Citations (UniProtKB)",
    "description": "The Mouse Proteoform Phosphorylation Citations (UniProtKB) dataset contains Mus musculus [taxid:10090] ...",
    "filename_list": "mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filename": "mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q9JLC8-1...",
                "A tissue-spe..."
            ],
            [
                "Q8C8R3-1...",
                "A tissue-spe..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q9JLC8-1",
                "A tissue-specific atlas of mouse protein phosphorylation and expression.",
                "Cell",
                "2010 Dec 23",
                "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP",
                "protein_xref_pubmed",
                "21183079",
                "protein_xref_uniprotkb",
                "Q9JLC8"
            ],
            [
                "Q8C8R3-1",
                "A tissue-specific atlas of mouse protein phosphorylation and expression.",
                "Cell",
                "2010 Dec 23",
                "Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP",
                "protein_xref_pubmed",
                "21183079",
                "protein_xref_uniprotkb",
                "Q8C8R3"
            ]
        ]
    },
    "readme": "Name\n   - Mouse Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n   - v-2.10.1\n\nCreated on\n  - 2021-10-15T08:01:56.010001\n\nModified on\n   - 2025-10-09T14:25:10.690Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Proteoform Phosphorylation Citations (UniProtKB) dataset contains Mus musculus [taxid:10090] publication information of phosphorylated glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Phosphorylation\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/compiled/all_blacklisted_pmids.csv\n      Name: mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      Name: mouse_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/mouse_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"4374\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"328\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"96\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"308\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"328\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"328\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"4374\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv"
}