{
    "bcoid": "GLY_000538",
    "title": "Glycan Citations (NCFG)",
    "description": "The Glycan Citations (NCFG) dataset contains publication information for a library of complex multiantennary ...",
    "filename_list": "glycan_citations_ncfg.csv",
    "filename": "glycan_citations_ncfg.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "Citations"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Drosophila melanogaster",
            "Homo sapiens",
            "Mus musculus",
            "Rattus norvegicus",
            "Rattus",
            "Sus scrofa",
            "Severe acute respiratory syndrome coronavirus 2"
        ]
    },
    "minitable": {
        "content": [
            [
                "G39213VZ...",
                "Unique Bindi..."
            ],
            [
                "G29011JC...",
                "Unique Bindi..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "G39213VZ",
                "Unique Binding Specificities of Proteins toward Isomeric Asparagine-Linked Glycans.",
                "Cell chemical biology",
                "2019 Apr 18",
                "Gao C, Hanes MS, Byrd-Leotis LA, Wei M, Jia N, Kardish RJ, McKitrick TR, Steinhauer DA, Cummings RD",
                "glycan_xref_pubmed",
                "30745240",
                "glycan_xref_data_submission",
                "GLY_000538"
            ],
            [
                "G29011JC",
                "Unique Binding Specificities of Proteins toward Isomeric Asparagine-Linked Glycans.",
                "Cell chemical biology",
                "2019 Apr 18",
                "Gao C, Hanes MS, Byrd-Leotis LA, Wei M, Jia N, Kardish RJ, McKitrick TR, Steinhauer DA, Cummings RD",
                "glycan_xref_pubmed",
                "30745240",
                "glycan_xref_data_submission",
                "GLY_000538"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Citations (NCFG)\n\nVersion\n   - v-2.10.1\n\nCreated on\n  - 2021-01-04T15:07:01.965445\n\nModified on\n   - 2024-05-17T11:24:03.825Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Richard Cummings [rcummin1@bidmc.harvard.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The Glycan Citations (NCFG) dataset contains publication information for a library of complex multiantennary Asn-linked N-glycans generated by chemo-enzymatic synthesis, including PMID, journal name, date, author and title. The dataset is derived from the dataset contributed by the Richard Cummings Laboratory (NCFG BIDMC Harvard Medical School) http://data.glygen.org/GLY_000600.\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - Citations\n   - NCFG\n\n   Pipeline Steps\n   - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-glycan-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/compiled/all_blacklisted_pmids.csv\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/glycan_masterlist.csv\n      Name: glycan_evidence_ncfg.csv\n      URI: https:/data.glygen.org/ln2downloads/ncfg/09_01_2020/glycan_evidence_ncfg.csv\n   Output Subdomain\n      Name: glycan_citations_ncfg.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/glycan_citations_ncfg.csv\n      Name: glycan_citations_ncfg.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/glycan_citations_ncfg.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"38\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"1\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"1\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/glycan_citations_ncfg.csv"
}