{ "bcoid": "GLY_000482", "title": "SARS CoV 2 Proteoform Citations (UniCarbKB)", "description": "Citation details (such as title, journal_name, publication_date, authors) corresponding to the Digital ...", "filename_list": "sarscov2_proteoform_citations_glycosylation_sites_unicarbkb.csv", "filename": "sarscov2_proteoform_citations_glycosylation_sites_unicarbkb.csv", "filetype": "csv", "categories": { "status": [ "Reviewed" ], "molecule": [ "Proteoform" ], "species": [ "Severe acute respiratory syndrome coronavirus 2" ], "tag": [ "Protein Citations" ], "file_type": [ "csv" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P0DTC2-1...", "Mapping the ..." ], [ "P0DTC2-1...", "Mapping the ..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "P0DTC2-1", "Mapping the SARS-CoV-2 spike glycoprotein-derived peptidome presented by HLA class II on dendritic cells.", "Cell reports", "2021 May 25", "Parker R, Partridge T, Wormald C, Kawahara R, Stalls V, Aggelakopoulou M, Parker J, Powell Doherty R, Ariosa Morejon Y, Lee E, Saunders K, Haynes BF, Acharya P, Thaysen-Andersen M, Borrow P, Ternette N", "protein_xref_pubmed", "34004174", "protein_xref_unicarbkb_ds", "GLY_000479", "G02815KT" ], [ "P0DTC2-1", "Mapping the SARS-CoV-2 spike glycoprotein-derived peptidome presented by HLA class II on dendritic cells", "Cell Rep", "2021", "Parker R., Partridge T., Wormald C., Kawahara R., Stalls V., Aggelakopoulou M., Parker J., Powell Doherty R., Ariosa Morejon Y., Lee E., Saunders K., Haynes B.F., Acharya P., Thaysen-Andersen M., Borrow P., Ternette N.", "protein_xref_doi", "10.1016/j.celrep.2021.109179", "protein_xref_unicarbkb_ds", "GLY_000479", "G02815KT" ] ] }, "readme": "Name\n - SARS CoV 2 Proteoform Citations (UniCarbKB)\n\nVersion\n - v-2.10.1\n\nCreated on\n - 2020-04-20T17:08:49.084209\n\nModified on\n - 2024-12-05T19:17:51.633Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n - Matthew Campbell [m.campbell2@griffith.edu.au]\n\nChecksum\n - \n\nUsability Domain\n - Citation details (such as title, journal_name, publication_date, authors) corresponding to the Digital Object Identifiers (DOI)/PMID present in dataset https://data.glygen.org/GLYDS000479\n\nDescription Domain\n Keywords\n - Proteins\n - DOI (Digital Object Identifier)\n\n Pipeline Steps\n - Step-1: The DOI(s) were extracted from dataset https://data.glygen.org/GLYDS000479. The corresponding details were manually compiled by the provider. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: all_blacklisted_pmids.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/compiled/all_blacklisted_pmids.csv\n Name: doi_citations.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/compiled/doi_citations.csv\n Name: sarscov2_proteoform_citations_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/compiled/sarscov2_proteoform_citations_unicarbkb.csv\n Name: sarscov2_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/sarscov2_proteoform_glycosylation_sites_unicarbkb.csv\n Output Subdomain\n Name: sarscov2_proteoform_citations_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/sarscov2_proteoform_citations_glycosylation_sites_unicarbkb.csv\n Name: sarscov2_proteoform_citations_glycosylation_sites_unicarbkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/sarscov2_proteoform_citations_glycosylation_sites_unicarbkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"14\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"11\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"7\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"14\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"15\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"2\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"2\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"177\"", "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/sarscov2_proteoform_citations_glycosylation_sites_unicarbkb.csv" }