{ "bcoid": "GLY_000030", "title": "Mouse Glycosyltransferases", "description": "The Mouse Glycosyltransferases dataset contains a list of Mus musculus [taxid:10090] Glycosyltransferases ...", "filename_list": "mouse_protein_glycosyltransferase.csv", "filename": "mouse_protein_glycosyltransferase.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tag": [ "Glycosyltransferases" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q6ZQ11-1...", "Mus musculus..." ], [ "P70428-1...", "Mus musculus..." ] ], "headers": [ "uniprotkb_ca...", "species..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "species" }, { "type": "string", "label": "status" }, { "type": "string", "label": "gene_symbol" }, { "type": "string", "label": "uniprotkb_protein_name" }, { "type": "string", "label": "ec_number" }, { "type": "string", "label": "brenda_ec_number" }, { "type": "string", "label": "cazy_gt_family" }, { "type": "string", "label": "interpro_id" }, { "type": "string", "label": "pfam_ac" }, { "type": "string", "label": "go_molecular_function" } ], [ "Q6ZQ11-1", "Mus musculus (Mouse)", "reviewed", "Chsy1", "Chondroitin sulfate synthase 1 (EC 2.4.1.175) (EC 2.4.1.226) (Chondroitin glucuronyltransferase 1) (Chondroitin synthase 1) (ChSy-1) (Glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase 1) (N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase 1) (N-acetylgalactosaminyltransferase 1)", "2.4.1.175|2.4.1.226", "", "GT31|GT7|", "IPR008428|IPR029044", "PF05679", "glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity [GO:0047238]|metal ion binding [GO:0046872]|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity [GO:0050510]|transferase activity, transferring glycosyl groups [GO:0016757]" ], [ "P70428-1", "Mus musculus (Mouse)", "reviewed", "Ext2", "Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225) (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Multiple exostoses protein 2 homolog)", "2.4.1.224|2.4.1.225", "", "GT47|GT64|", "IPR004263|IPR027673|IPR040911|IPR015338|IPR029044", "PF03016|PF09258", "acetylglucosaminyltransferase activity [GO:0008375]|glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity [GO:0050508]|glucuronosyltransferase activity [GO:0015020]|heparan sulfate N-acetylglucosaminyltransferase activity [GO:0042328]|metal ion binding [GO:0046872]|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity [GO:0050509]|protein heterodimerization activity [GO:0046982]|protein homodimerization activity [GO:0042803]|transferase activity, transferring glycosyl groups [GO:0016757]" ] ] }, "readme": "Name\n - Mouse Glycosyltransferases\n\nVersion\n - v-2.10.1\n\nCreated on\n - 2019-01-23T17:21:05.897519\n\nModified on\n - 2024-12-10T17:37:44.783Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n - Jeet Vora [jeetvora@gwu.edu]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Glycosyltransferases dataset contains a list of Mus musculus [taxid:10090] Glycosyltransferases derived from UniProtKB database using advanced search and other databases including CAZy, InterPro and Pfam. If you use this dataset please provide proper attribution to UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - GT\n - gycosyltransferase\n - CAZy\n\n Pipeline Steps\n - Step-1: The script maps and replaces the UniProtKb accession to the UniProtKB canonical accession\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_protein_glycosyltransferase.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/compiled/mouse_protein_glycosyltransferase.csv\n Name: mouse_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_protein_glycosyltransferase.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/mouse_protein_glycosyltransferase.csv\n Name: mouse_protein_glycosyltransferase.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.10.1/reviewed/mouse_protein_glycosyltransferase.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"194\"\n Name: \"species\"\n Description: \"Species of the protein.\"\n Unique Values: \"1\"\n Name: \"status\"\n Description: \"Status of the protein record in UniProtKB database that can be reviewed for UniProtKB/Swiss-Prot entry or unreviewed for UniProtKB/TrEMBL entry\"\n Unique Values: \"1\"\n Name: \"gene_symbol\"\n Description: \"\"Official gene name/symbol assigned to the gene. Human gene names/symbols are approved by the HUGO Gene Nomenclature Committee (HGNC)\"\n Unique Values: \"194\"\n Name: \"uniprotkb_protein_name\"\n Description: \"Name of the protein in UniProtKB database\"\n Unique Values: \"194\"\n Name: \"ec_number\"\n Description: \"Enzyme Commision number assigned to an enzyme by Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"88\"\n Name: \"brenda_ec_number\"\n Description: \"Enzyme Commission (EC) number assigned to enzyme in BRENDA database\"\n Unique Values: \"27\"\n Name: \"cazy_gt_family\"\n Description: \"The Family assigned to glycosyltransferase in the CAZy (Carbohydrate-Active enZYmes) database\"\n Unique Values: \"46\"\n Name: \"interpro_id\"\n Description: \"InterPro Identifier\"\n Unique Values: \"91\"\n Name: \"pfam_ac\"\n Description: \"Accession assigned to the protein family in the Pfam database\"\n Unique Values: \"58\"\n Name: \"go_molecular_function\"\n Description: \"\"The elemental activities of a gene product at the molecular level\"\n Unique Values: \"131\"", "downloadurl": "/ln2data/releases/data/v-2.10.1/reviewed/mouse_protein_glycosyltransferase.csv" }