{ "bcoid": "GLY_000737", "title": "Glycan Biomarkers (Biomarker Database)", "description": "The Glycan Biomarkers dataset contains glycan biomarker information, including cross-mapped GlyTouCan ...", "filename": "glycan_biomarkers.csv", "filetype": "csv", "categories": { "molecule": [ "Glycan" ], "tags": [ "Glycan Biomarker (BiomarkerDB)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ], "species": [ "Homo sapiens", "Mus musculus", "Rattus norvegicus", "Rattus", "Severe acute respiratory syndrome coronavirus 2", "Drosophila melanogaster", "Hepacivirus C" ] }, "minitable": { "content": [ [ "G78959US...", "A0414..." ], [ "G78959US...", "A0414..." ] ], "headers": [ "glytoucan_ac...", "biomarker_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "biomarker_id" }, { "type": "string", "label": "assessed_biomarker_entity" }, { "type": "string", "label": "biomarker" }, { "type": "string", "label": "best_biomarker_type" }, { "type": "string", "label": "loinc_code" }, { "type": "string", "label": "notes" }, { "type": "string", "label": "anatomical_entity" }, { "type": "string", "label": "uberon_id" }, { "type": "string", "label": "do_id" }, { "type": "string", "label": "do_name" }, { "type": "string", "label": "assessed_entity_type" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "G78959US", "A0414", "Sialylated tumor-related antigen (sTRA)", "increased level", "predictive", "NA", "Glycomotif:GGM.000001|Glycomotif:GGM.000005", "DOID:1793 / Pancreatic Cancer", "0000178", "1793", "DOID:1793 / Pancreatic Cancer", "glycan", "glycan_xref_biomarkerdb", "A0414", "glycan_xref_biomarkerdb", "A0414" ], [ "G78959US", "A0414", "Sialylated tumor-related antigen (sTRA)", "increased level", "predictive", "NA", "Glycomotif:GGM.000001|Glycomotif:GGM.000005", "DOID:1793 / Pancreatic Cancer", "0000178", "1793", "DOID:1793 / Pancreatic Cancer", "glycan", "glycan_xref_pubmed", "33093149", "glycan_xref_biomarkerdb", "A0414" ], [ "G53972TI", "A0415", "Trisialylated triantennary core fucosylated N-glycan", "increased level", "prognostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_biomarkerdb", "A0415", "glycan_xref_biomarkerdb", "A0415" ], [ "G53972TI", "A0415", "Trisialylated triantennary core fucosylated N-glycan", "increased level", "prognostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_pubmed", "20491449", "glycan_xref_biomarkerdb", "A0415" ], [ "G73813HX", "A0416", "Monosialylated biantennary N-glycan", "decreased level", "prognostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_biomarkerdb", "A0416", "glycan_xref_biomarkerdb", "A0416" ], [ "G73813HX", "A0416", "Monosialylated biantennary N-glycan", "decreased level", "prognostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_pubmed", "20491449", "glycan_xref_biomarkerdb", "A0416" ], [ "G33187NK", "A0417", "Lewis fucosylated triantennary N-glycan on leucine-rich alpha-2-glycoprotein-1 (LRG-FTG)", "increased level", "diagnostic", "NA", "Multi-component biomarker consists of leucine-rich alpha-2-glycoprotein-1 (UPKB:P02750) and fucosylated triantennary N-glycan (GTC:G33187NK)", "DOID:9256 / Colorectal Cancer", "0000178", "9256", "DOID:9256 / Colorectal Cancer", "glycan|protein", "glycan_xref_biomarkerdb", "A0417", "glycan_xref_biomarkerdb", "A0417" ], [ "G33187NK", "A0417", "Lewis fucosylated triantennary N-glycan on leucine-rich alpha-2-glycoprotein-1 (LRG-FTG)", "increased level", "diagnostic", "NA", "Multi-component biomarker consists of leucine-rich alpha-2-glycoprotein-1 (UPKB:P02750) and fucosylated triantennary N-glycan (GTC:G33187NK)", "DOID:9256 / Colorectal Cancer", "0000178", "9256", "DOID:9256 / Colorectal Cancer", "glycan|protein", "glycan_xref_pubmed", "29642865", "glycan_xref_biomarkerdb", "A0417" ], [ "G36521AS", "A0418", "Lewis x fucosylated monogalactosylated triantennary N-glycan (A3FG1)", "increased level", "prognostic", "NA", "Glycomotif:GGM.000001|Glycomotif:GGM.000018", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_biomarkerdb", "A0418", "glycan_xref_biomarkerdb", "A0418" ], [ "G36521AS", "A0418", "Lewis x fucosylated monogalactosylated triantennary N-glycan (A3FG1)", "increased level", "prognostic", "NA", "Glycomotif:GGM.000001|Glycomotif:GGM.000018", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_pubmed", "18818422", "glycan_xref_biomarkerdb", "A0418" ], [ "G57321FI", "A0419", "Alpha-N-acetylgalactosamine (GalNAc)", "increased level", "diagnostic", "NA", "Glycomotif:GGM.000008", "DOID:1319 / Brain Cancer", "0000955", "1319", "DOID:1319 / Brain Cancer", "glycan", "glycan_xref_biomarkerdb", "A0419", "glycan_xref_biomarkerdb", "A0419" ], [ "G57321FI", "A0419", "Alpha-N-acetylgalactosamine (GalNAc)", "increased level", "diagnostic", "NA", "Glycomotif:GGM.000008", "DOID:1319 / Brain Cancer", "0000955", "1319", "DOID:1319 / Brain Cancer", "glycan", "glycan_xref_pubmed", "22435486", "glycan_xref_biomarkerdb", "A0419" ], [ "G68544GH", "A0420", "Alpha-N-acetylglucosamine (GlcNAc)", "increased level", "diagnostic", "NA", "NA", "DOID:1319 / Brain Cancer", "0000955", "1319", "DOID:1319 / Brain Cancer", "glycan", "glycan_xref_biomarkerdb", "A0420", "glycan_xref_biomarkerdb", "A0420" ], [ "G68544GH", "A0420", "Alpha-N-acetylglucosamine (GlcNAc)", "increased level", "diagnostic", "NA", "NA", "DOID:1319 / Brain Cancer", "0000955", "1319", "DOID:1319 / Brain Cancer", "glycan", "glycan_xref_pubmed", "22435486", "glycan_xref_biomarkerdb", "A0420" ], [ "G00054MO", "A0422", "Agalactosylated biantennary core fucosylated N-glycan (FA2) and Sialyl Lewis x (SLex)", "increased level", "diagnostic", "NA", "Multi-component biomarker consists of core fucosylated agalactosylated biantennary glycan (GTC:G64669AQ) and Sialyl Lewis x (GTC:G00054MO)|Glycomotif:GGM.000001|Glycomotif:GGM.000018|Glycomotif:GGM.000022|Glycomotif:GGM.000034", "DOID:2394 / Ovarian Cancer", "0000178", "2394", "DOID:2394 / Ovarian Cancer", "glycan", "glycan_xref_biomarkerdb", "A0422", "glycan_xref_biomarkerdb", "A0422" ], [ "G00054MO", "A0422", "Agalactosylated biantennary core fucosylated N-glycan (FA2) and Sialyl Lewis x (SLex)", "increased level", "diagnostic", "NA", "Multi-component biomarker consists of core fucosylated agalactosylated biantennary glycan (GTC:G64669AQ) and Sialyl Lewis x (GTC:G00054MO)|Glycomotif:GGM.000001|Glycomotif:GGM.000018|Glycomotif:GGM.000022|Glycomotif:GGM.000034", "DOID:2394 / Ovarian Cancer", "0000178", "2394", "DOID:2394 / Ovarian Cancer", "glycan", "glycan_xref_pubmed", "17884841", "glycan_xref_biomarkerdb", "A0422" ], [ "G64669AQ", "A0422", "Agalactosylated biantennary core fucosylated N-glycan (FA2) and Sialyl Lewis x (SLex)", "increased level", "diagnostic", "NA", "Multi-component biomarker consists of core fucosylated agalactosylated biantennary glycan (GTC:G64669AQ) and Sialyl Lewis x (GTC:G00054MO)", "DOID:2394 / Ovarian Cancer", "0000178", "2394", "DOID:2394 / Ovarian Cancer", "glycan", "glycan_xref_biomarkerdb", "A0422", "glycan_xref_biomarkerdb", "A0422" ], [ "G64669AQ", "A0422", "Agalactosylated biantennary core fucosylated N-glycan (FA2) and Sialyl Lewis x (SLex)", "increased level", "diagnostic", "NA", "Multi-component biomarker consists of core fucosylated agalactosylated biantennary glycan (GTC:G64669AQ) and Sialyl Lewis x (GTC:G00054MO)", "DOID:2394 / Ovarian Cancer", "0000178", "2394", "DOID:2394 / Ovarian Cancer", "glycan", "glycan_xref_pubmed", "17884841", "glycan_xref_biomarkerdb", "A0422" ], [ "G23384FD", "A0435", "Ratio of disialylated to monosialylated O-glycoforms of hemopexin (S-HPX)", "increased level", "monitoring", "NA", "Multi-component biomarker consists of disialylated O-glycan (GTC:G90233EO), monosialylated O-glycan (GTC:G23384FD) and hemopexin (UPKB:P02790)", "DOID:3571 / Liver Cancer", "0000178", "3571", "DOID:3571 / Liver Cancer", "glycan|protein", "glycan_xref_biomarkerdb", "A0435", "glycan_xref_biomarkerdb", "A0435" ], [ "G23384FD", "A0435", "Ratio of disialylated to monosialylated O-glycoforms of hemopexin (S-HPX)", "increased level", "monitoring", "NA", "Multi-component biomarker consists of disialylated O-glycan (GTC:G90233EO), monosialylated O-glycan (GTC:G23384FD) and hemopexin (UPKB:P02790)", "DOID:3571 / Liver Cancer", "0000178", "3571", "DOID:3571 / Liver Cancer", "glycan|protein", "glycan_xref_pubmed", "27688741", "glycan_xref_biomarkerdb", "A0435" ], [ "G90233EO", "A0435", "Ratio of disialylated to monosialylated O-glycoforms of hemopexin (S-HPX)", "increased level", "monitoring", "NA", "Multi-component biomarker consists of disialylated O-glycan (GTC:G90233EO), monosialylated O-glycan (GTC:G23384FD) and hemopexin (UPKB:P02790)", "DOID:3571 / Liver Cancer", "0000178", "3571", "DOID:3571 / Liver Cancer", "glycan|protein", "glycan_xref_biomarkerdb", "A0435", "glycan_xref_biomarkerdb", "A0435" ], [ "G90233EO", "A0435", "Ratio of disialylated to monosialylated O-glycoforms of hemopexin (S-HPX)", "increased level", "monitoring", "NA", "Multi-component biomarker consists of disialylated O-glycan (GTC:G90233EO), monosialylated O-glycan (GTC:G23384FD) and hemopexin (UPKB:P02790)", "DOID:3571 / Liver Cancer", "0000178", "3571", "DOID:3571 / Liver Cancer", "glycan|protein", "glycan_xref_pubmed", "27688741", "glycan_xref_biomarkerdb", "A0435" ], [ "G35622MN", "A0483", "Monosialylated core fucosylated N-glycan", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_biomarkerdb", "A0483", "glycan_xref_biomarkerdb", "A0483" ], [ "G35622MN", "A0483", "Monosialylated core fucosylated N-glycan", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_pubmed", "18487288", "glycan_xref_biomarkerdb", "A0483" ], [ "G28790AT", "A0485", "Disialylated tetraantennary core fucosylated N-glycan", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_biomarkerdb", "A0485", "glycan_xref_biomarkerdb", "A0485" ], [ "G28790AT", "A0485", "Disialylated tetraantennary core fucosylated N-glycan", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_pubmed", "18487288", "glycan_xref_biomarkerdb", "A0485" ], [ "G20102QS", "A0486", "Trisialylated Lewis fucosylated triantennary core fucosylated N-glycan", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_biomarkerdb", "A0486", "glycan_xref_biomarkerdb", "A0486" ], [ "G20102QS", "A0486", "Trisialylated Lewis fucosylated triantennary core fucosylated N-glycan", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_pubmed", "18487288", "glycan_xref_biomarkerdb", "A0486" ], [ "G72750GQ", "A0487", "Trisialylated core fucosylated tetraantennary N-glycan", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_biomarkerdb", "A0487", "glycan_xref_biomarkerdb", "A0487" ], [ "G72750GQ", "A0487", "Trisialylated core fucosylated tetraantennary N-glycan", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_pubmed", "18487288", "glycan_xref_biomarkerdb", "A0487" ], [ "G66374JF", "A0488", "Tetrasialylated tetraantennary N-glycan", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_biomarkerdb", "A0488", "glycan_xref_biomarkerdb", "A0488" ], [ "G66374JF", "A0488", "Tetrasialylated tetraantennary N-glycan", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_pubmed", "18487288", "glycan_xref_biomarkerdb", "A0488" ], [ "G46440UD", "A0489", "Disialylated triantennary N-glycan", "decreased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_biomarkerdb", "A0489", "glycan_xref_biomarkerdb", "A0489" ], [ "G46440UD", "A0489", "Disialylated triantennary N-glycan", "decreased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_pubmed", "18487288", "glycan_xref_biomarkerdb", "A0489" ], [ "G41793DV", "A0490", "Monosialylated hybrid N-glycan", "decreased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_biomarkerdb", "A0490", "glycan_xref_biomarkerdb", "A0490" ], [ "G41793DV", "A0490", "Monosialylated hybrid N-glycan", "decreased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000178", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_pubmed", "18487288", "glycan_xref_biomarkerdb", "A0490" ], [ "G85767HW", "A0491", "Biantennary bisected core fucosylated N-glycan (A2G1(6)FB)", "increased level", "diagnostic", "NA", "Glycomotif:GGM.000001", "DOID:3571 / Liver Cancer", "0000178", "3571", "DOID:3571 / Liver Cancer", "glycan", "glycan_xref_biomarkerdb", "A0491", "glycan_xref_biomarkerdb", "A0491" ], [ "G85767HW", "A0491", "Biantennary bisected core fucosylated N-glycan (A2G1(6)FB)", "increased level", "diagnostic", "NA", "Glycomotif:GGM.000001", "DOID:3571 / Liver Cancer", "0000178", "3571", "DOID:3571 / Liver Cancer", "glycan", "glycan_xref_pubmed", "33255418", "glycan_xref_biomarkerdb", "A0491" ], [ "G36123IU", "A0492", "STn glycoform of CD44v6", "presence of", "diagnostic", "NA", "Multi-component biomarker consists of STn (GTC:G36123IU) and CD44 (UPKB:P16070)|Glycomotif:GGM.000012", "DOID:10534 / Stomach Cancer", "0000178", "10534", "DOID:10534 / Stomach Cancer", "glycan|protein", "glycan_xref_biomarkerdb", "A0492", "glycan_xref_biomarkerdb", "A0492" ], [ "G36123IU", "A0492", "STn glycoform of CD44v6", "presence of", "diagnostic", "NA", "Multi-component biomarker consists of STn (GTC:G36123IU) and CD44 (UPKB:P16070)|Glycomotif:GGM.000012", "DOID:10534 / Stomach Cancer", "0000178", "10534", "DOID:10534 / Stomach Cancer", "glycan|protein", "glycan_xref_pubmed", "25813380", "glycan_xref_biomarkerdb", "A0492" ], [ "G36123IU", "A0493", "STn glycoform of GalNAc-T5", "presence of", "diagnostic", "NA", "Multi-component biomarker consists of STn (GTC:G36123IU) and GalNAc-T5 (UPKB:Q7Z7M9)|Glycomotif:GGM.000012", "DOID:10534 / Stomach Cancer", "0000178", "10534", "DOID:10534 / Stomach Cancer", "glycan|protein", "glycan_xref_biomarkerdb", "A0493", "glycan_xref_biomarkerdb", "A0493" ], [ "G36123IU", "A0493", "STn glycoform of GalNAc-T5", "presence of", "diagnostic", "NA", "Multi-component biomarker consists of STn (GTC:G36123IU) and GalNAc-T5 (UPKB:Q7Z7M9)|Glycomotif:GGM.000012", "DOID:10534 / Stomach Cancer", "0000178", "10534", "DOID:10534 / Stomach Cancer", "glycan|protein", "glycan_xref_pubmed", "25813380", "glycan_xref_biomarkerdb", "A0493" ], [ "G52069SB", "A0494", "Biantennary core fucosylated N-glycan", "decreased level", "diagnostic", "NA", "NA", "DOID:5041 / Esophageal Cancer", "0000178", "5041", "DOID:5041 / Esophageal Cancer", "glycan", "glycan_xref_biomarkerdb", "A0494", "glycan_xref_biomarkerdb", "A0494" ], [ "G52069SB", "A0494", "Biantennary core fucosylated N-glycan", "decreased level", "diagnostic", "NA", "NA", "DOID:5041 / Esophageal Cancer", "0000178", "5041", "DOID:5041 / Esophageal Cancer", "glycan", "glycan_xref_pubmed", "19441788", "glycan_xref_biomarkerdb", "A0494" ], [ "G86265JV", "A0495", "Monogalactosylated biantennary core fucosylated N-glycan", "decreased level", "diagnostic", "NA", "NA", "DOID:5041 / Esophageal Cancer", "0000178", "5041", "DOID:5041 / Esophageal Cancer", "glycan", "glycan_xref_biomarkerdb", "A0495", "glycan_xref_biomarkerdb", "A0495" ], [ "G86265JV", "A0495", "Monogalactosylated biantennary core fucosylated N-glycan", "decreased level", "diagnostic", "NA", "NA", "DOID:5041 / Esophageal Cancer", "0000178", "5041", "DOID:5041 / Esophageal Cancer", "glycan", "glycan_xref_pubmed", "19441788", "glycan_xref_biomarkerdb", "A0495" ], [ "G06014UR", "A0496", "Monosialylated monogalactosylated biantennary N-glycan", "decreased level", "diagnostic", "NA", "NA", "DOID:5041 / Esophageal Cancer", "0000178", "5041", "DOID:5041 / Esophageal Cancer", "glycan", "glycan_xref_biomarkerdb", "A0496", "glycan_xref_biomarkerdb", "A0496" ], [ "G06014UR", "A0496", "Monosialylated monogalactosylated biantennary N-glycan", "decreased level", "diagnostic", "NA", "NA", "DOID:5041 / Esophageal Cancer", "0000178", "5041", "DOID:5041 / Esophageal Cancer", "glycan", "glycan_xref_pubmed", "19441788", "glycan_xref_biomarkerdb", "A0496" ], [ "G80966KZ", "A0497", "Man6 high mannose N-glycan (F0H6N2S0)", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000479", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_biomarkerdb", "A0497", "glycan_xref_biomarkerdb", "A0497" ], [ "G80966KZ", "A0497", "Man6 high mannose N-glycan (F0H6N2S0)", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000479", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_pubmed", "30889355", "glycan_xref_biomarkerdb", "A0497" ], [ "G36059IK", "A0498", "Man7 high mannose N-glycan (F0H7N2S0)", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000479", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_biomarkerdb", "A0498", "glycan_xref_biomarkerdb", "A0498" ], [ "G36059IK", "A0498", "Man7 high mannose N-glycan (F0H7N2S0)", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000479", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_pubmed", "30889355", "glycan_xref_biomarkerdb", "A0498" ], [ "G66676MI", "A0499", "Man8 high mannose N-glycan (F0H8N2S0)", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000479", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_biomarkerdb", "A0499", "glycan_xref_biomarkerdb", "A0499" ], [ "G66676MI", "A0499", "Man8 high mannose N-glycan (F0H8N2S0)", "increased level", "diagnostic", "NA", "NA", "DOID:1612 / Breast Cancer", "0000479", "1612", "DOID:1612 / Breast Cancer", "glycan", "glycan_xref_pubmed", "30889355", "glycan_xref_biomarkerdb", "A0499" ], [ "G09503CT", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_biomarkerdb", "A0500", "glycan_xref_biomarkerdb", "A0500" ], [ "G09503CT", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_pubmed", "31727974", "glycan_xref_biomarkerdb", "A0500" ], [ "G12638YK", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_biomarkerdb", "A0500", "glycan_xref_biomarkerdb", "A0500" ], [ "G12638YK", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_pubmed", "31727974", "glycan_xref_biomarkerdb", "A0500" ], [ "G42079FQ", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_biomarkerdb", "A0500", "glycan_xref_biomarkerdb", "A0500" ], [ "G42079FQ", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_pubmed", "31727974", "glycan_xref_biomarkerdb", "A0500" ], [ "G67579EM", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_biomarkerdb", "A0500", "glycan_xref_biomarkerdb", "A0500" ], [ "G67579EM", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_pubmed", "31727974", "glycan_xref_biomarkerdb", "A0500" ], [ "G53972TI", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_biomarkerdb", "A0500", "glycan_xref_biomarkerdb", "A0500" ], [ "G53972TI", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_pubmed", "31727974", "glycan_xref_biomarkerdb", "A0500" ], [ "G46440UD", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_biomarkerdb", "A0500", "glycan_xref_biomarkerdb", "A0500" ], [ "G46440UD", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_pubmed", "31727974", "glycan_xref_biomarkerdb", "A0500" ], [ "G41793DV", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_biomarkerdb", "A0500", "glycan_xref_biomarkerdb", "A0500" ], [ "G41793DV", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_pubmed", "31727974", "glycan_xref_biomarkerdb", "A0500" ], [ "G44246UD", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_biomarkerdb", "A0500", "glycan_xref_biomarkerdb", "A0500" ], [ "G44246UD", "A0500", "CRPC N-glycan score", "increased level", "predictive", "NA", "Multi-component biomarker consists of monosialylated monogalactosylated hybrid N-glycan (GTC:G41793DV), triantennary N-glycan, disialylated triantennary N-glycan (GTC:G46440UD), disialylated triantennary core fucosylated N-glycan (GTC:G44246UD), trisialylated triantennary N-glycan (GTC:G67579EM), disialylated tetraantennary N-glycan (GTC:G42079FQ), trisialylated triantennary core fucosylated N-glycan (GTC:G53972TI), trisialylated tetraantennary N-glycan (GTC:G12638YK) and tetrasialylated tetraantennary core fucosylated N-glycan (GTC:G09503CT)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan", "glycan_xref_pubmed", "31727974", "glycan_xref_biomarkerdb", "A0500" ], [ "G36949LL", "A0501", "Ratio of monosialylated monoantennary N-glycan to digalactosylated biantennary core fucosylated N-glycan", "increased level", "diagnostic", "NA", "Multi-component biomarker consists of 1708m/z monosialylated monoantennary N-glycan (GTC:G36949LL) and 1914m/z biantennary core fucosylated N-glycan (GTC:G52069SB)", "DOID:9256 / Colorectal Cancer", "0000178", "9256", "DOID:9256 / Colorectal Cancer", "glycan", "glycan_xref_biomarkerdb", "A0501", "glycan_xref_biomarkerdb", "A0501" ], [ "G36949LL", "A0501", "Ratio of monosialylated monoantennary N-glycan to digalactosylated biantennary core fucosylated N-glycan", "increased level", "diagnostic", "NA", "Multi-component biomarker consists of 1708m/z monosialylated monoantennary N-glycan (GTC:G36949LL) and 1914m/z biantennary core fucosylated N-glycan (GTC:G52069SB)", "DOID:9256 / Colorectal Cancer", "0000178", "9256", "DOID:9256 / Colorectal Cancer", "glycan", "glycan_xref_pubmed", "35064597", "glycan_xref_biomarkerdb", "A0501" ], [ "G52069SB", "A0501", "Ratio of monosialylated monoantennary N-glycan to digalactosylated biantennary core fucosylated N-glycan", "increased level", "diagnostic", "NA", "Multi-component biomarker consists of 1708m/z monosialylated monoantennary N-glycan (GTC:G36949LL) and 1914m/z biantennary core fucosylated N-glycan (GTC:G52069SB)", "DOID:9256 / Colorectal Cancer", "0000178", "9256", "DOID:9256 / Colorectal Cancer", "glycan", "glycan_xref_biomarkerdb", "A0501", "glycan_xref_biomarkerdb", "A0501" ], [ "G52069SB", "A0501", "Ratio of monosialylated monoantennary N-glycan to digalactosylated biantennary core fucosylated N-glycan", "increased level", "diagnostic", "NA", "Multi-component biomarker consists of 1708m/z monosialylated monoantennary N-glycan (GTC:G36949LL) and 1914m/z biantennary core fucosylated N-glycan (GTC:G52069SB)", "DOID:9256 / Colorectal Cancer", "0000178", "9256", "DOID:9256 / Colorectal Cancer", "glycan", "glycan_xref_pubmed", "35064597", "glycan_xref_biomarkerdb", "A0501" ], [ "G57321FI", "A0503", "Tn glycoform of CA125", "increased level", "predictive", "NA", "Multi-component biomarker consists of Tn (GTC:G57321FI) and CA125 (UPKB:Q8WXI7)|Glycomotif:GGM.000008", "DOID:2394 / Ovarian Cancer", "0000178", "2394", "DOID:2394 / Ovarian Cancer", "glycan|protein", "glycan_xref_biomarkerdb", "A0503", "glycan_xref_biomarkerdb", "A0503" ], [ "G57321FI", "A0503", "Tn glycoform of CA125", "increased level", "predictive", "NA", "Multi-component biomarker consists of Tn (GTC:G57321FI) and CA125 (UPKB:Q8WXI7)|Glycomotif:GGM.000008", "DOID:2394 / Ovarian Cancer", "0000178", "2394", "DOID:2394 / Ovarian Cancer", "glycan|protein", "glycan_xref_pubmed", "36564848", "glycan_xref_biomarkerdb", "A0503" ], [ "G09737HO", "A0504", "Fucosylated PSA", "increased level", "diagnostic", "NA", "Multi-component biomarker consists of fucose (GTC:G09737HO) and PSA (UPKB:P07288)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan|protein", "glycan_xref_biomarkerdb", "A0504", "glycan_xref_biomarkerdb", "A0504" ], [ "G09737HO", "A0504", "Fucosylated PSA", "increased level", "diagnostic", "NA", "Multi-component biomarker consists of fucose (GTC:G09737HO) and PSA (UPKB:P07288)", "DOID:10283 / Prostate Cancer", "0000178", "10283", "DOID:10283 / Prostate Cancer", "glycan|protein", "glycan_xref_pubmed", "25553114", "glycan_xref_biomarkerdb", "A0504" ] ] }, "readme": "Name\n - Glycan Biomarkers (Biomarker Database)\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2023-03-14T20:00:08.127Z\n\nModified on\n - 2023-03-14T20:07:25.567Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Dan Lyman [danlyman@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Glycan Biomarkers dataset contains glycan biomarker information, including cross-mapped GlyTouCan accessions, assessed biomarker entity, biomarker type, specimen type, LOINC code, disease name, and source evidence from the biomarker portal (https://data.oncomx.org/allbiomarkers). If you use this dataset, please provide proper attribution to OncoMX and GlyGen. Cite: PMID:32142370, PMID:34015823, and PMID:31616925.\n\nDescription Domain\n Keywords\n - biomarker\n - cancer\n\n Pipeline Steps\n - Step-1: \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/glycan_masterlist.csv\n Name: doid2uberonid_mapping_v5.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/misc/doid2uberonid_mapping_v5.csv\n Name: allbiomarkers-all.csv\n URI: /data/shared/glyds/downloads/biomarkerdb/2023_04_13/allbiomarkers-all.csv\n Output Subdomain\n Name: glycan_biomarkers.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/glycan_biomarkers.csv\n Name: glycan_biomarkers.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/glycan_biomarkers.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"33\"\n Name: \"biomarker_id\"\n Description: \"\"\n Unique Values: \"29\"\n Name: \"assessed_biomarker_entity\"\n Description: \"\"\n Unique Values: \"29\"\n Name: \"biomarker\"\n Description: \"\"\n Unique Values: \"3\"\n Name: \"best_biomarker_type\"\n Description: \"\"\n Unique Values: \"4\"\n Name: \"loinc_code\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"notes\"\n Description: \"Notes\"\n Unique Values: \"15\"\n Name: \"anatomical_entity\"\n Description: \"\"\n Unique Values: \"9\"\n Name: \"uberon_id\"\n Description: \"\"\n Unique Values: \"3\"\n Name: \"do_id\"\n Description: \"Disease Ontology identifier\"\n Unique Values: \"9\"\n Name: \"do_name\"\n Description: \"Disease Ontology term or name for the disease assigned to the Disease Ontology identifier\"\n Unique Values: \"9\"\n Name: \"assessed_entity_type\"\n Description: \"\"\n Unique Values: \"2\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"45\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"29\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/glycan_biomarkers.csv" }