{ "bcoid": "GLY_000728", "title": "Human UniProtKB xref GlyConnect", "description": "Human UniProtKB xref GlyConnect dataset contains human(taxid: 9606) UniProtKB canonical accessions mapped ...", "filename": "human_protein_xref_glyconnect.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tags": [ "GlyConnect Cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q99519-1...", "protein_xref..." ], [ "P45984-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q99519-1", "protein_xref_glyconnect", "1743", "" ], [ "P45984-1", "protein_xref_glyconnect", "1515", "" ], [ "Q96AQ6-1", "protein_xref_glyconnect", "1622", "" ], [ "P01042-1", "protein_xref_glyconnect", "810", "" ], [ "Q9Y646-1", "protein_xref_glyconnect", "1069", "" ], [ "Q92896-1", "protein_xref_glyconnect", "1280", "" ], [ "P0DN86-1", "protein_xref_glyconnect", "88", "" ], [ "P0DN86-1", "protein_xref_glyconnect", "91", "" ], [ "P05556-1", "protein_xref_glyconnect", "1414", "" ], [ "P05556-1", "protein_xref_glyconnect", "283", "" ], [ "P11912-1", "protein_xref_glyconnect", "1028", "" ], [ "Q8IWV2-1", "protein_xref_glyconnect", "1156", "" ], [ "P08962-1", "protein_xref_glyconnect", "1088", "" ], [ "O95445-1", "protein_xref_glyconnect", "1015", "" ], [ "Q6UVK1-1", "protein_xref_glyconnect", "2028", "" ], [ "A6NMZ7-1", "protein_xref_glyconnect", "1140", "" ], [ "Q9Y2X9-1", "protein_xref_glyconnect", "2864", "" ], [ "Q16853-1", "protein_xref_glyconnect", "1502", "" ], [ "Q08629-1", "protein_xref_glyconnect", "719", "" ], [ "Q9UEF7-1", "protein_xref_glyconnect", "1435", "" ], [ "O14594-1", "protein_xref_glyconnect", "1550", "" ], [ "Q17RP2-1", "protein_xref_glyconnect", "2085", "" ], [ "Q12791-1", "protein_xref_glyconnect", "1058", "" ], [ "Q6UX06-1", "protein_xref_glyconnect", "1585", "" ], [ "Q15223-1", "protein_xref_glyconnect", "1536", "" ], [ "P22310-1", "protein_xref_glyconnect", "1876", "" ], [ "P02489-1", "protein_xref_glyconnect", "33", "" ], [ "Q02083-1", "protein_xref_glyconnect", "1534", "" ], [ "P07942-1", "protein_xref_glyconnect", "1442", "" ], [ "Q99808-1", "protein_xref_glyconnect", "1219", "" ], [ "P27169-1", "protein_xref_glyconnect", "726", "" ], [ "Q9UBS9-1", "protein_xref_glyconnect", "1775", "" ], [ "Q9UBS4-1", "protein_xref_glyconnect", "1185", "" ], [ "Q16581-1", "protein_xref_glyconnect", "811", "" ], [ "Q96KA5-1", "protein_xref_glyconnect", "1117", "" ], [ "O60656-1", "protein_xref_glyconnect", "1881", "" ], [ "Q07954-1", "protein_xref_glyconnect", "1638", "" ], [ "O96005-1", "protein_xref_glyconnect", "1116", "" ], [ "O94905-1", "protein_xref_glyconnect", "1222", "" ], [ "O94901-8", "protein_xref_glyconnect", "1776", "" ], [ "O43524-1", "protein_xref_glyconnect", "1253", "" ], [ "Q5JPE7-1", "protein_xref_glyconnect", "1573", "" ], [ "P05026-1", "protein_xref_glyconnect", "1757", "" ], [ "P01266-1", "protein_xref_glyconnect", "600", "" ], [ "Q8WUM9-1", "protein_xref_glyconnect", "2080", "" ], [ "Q9Y5F2-1", "protein_xref_glyconnect", "1677", "" ], [ "P50454-1", "protein_xref_glyconnect", "658", "" ], [ "P20160-1", "protein_xref_glyconnect", "1023", "" ], [ "Q13433-1", "protein_xref_glyconnect", "1908", "" ], [ "Q13439-1", "protein_xref_glyconnect", "690", "" ], [ "P18428-1", "protein_xref_glyconnect", "1985", "" ], [ "P08575-3", "protein_xref_glyconnect", "339", "" ], [ "Q9UKU9-1", "protein_xref_glyconnect", "1009", "" ], [ "P02458-2", "protein_xref_glyconnect", "1126", "" ], [ "P02452-1", "protein_xref_glyconnect", "1125", "" ], [ "P20645-1", "protein_xref_glyconnect", "1083", "" ], [ "Q8IXL6-1", "protein_xref_glyconnect", "1230", "" ], [ "P06756-1", "protein_xref_glyconnect", "1412", "" ], [ "Q6P179-1", "protein_xref_glyconnect", "1204", "" ], [ "Q9NSI5-1", "protein_xref_glyconnect", "1393", "" ], [ "Q14390-1", "protein_xref_glyconnect", "1260", "" ], [ "P11678-1", "protein_xref_glyconnect", "1208", "" ], [ "Q02985-1", "protein_xref_glyconnect", "1154", "" ], [ "Q99650-1", "protein_xref_glyconnect", "1965", "" ], [ "P54760-1", "protein_xref_glyconnect", "1214", "" ], [ "Q7Z4H8-1", "protein_xref_glyconnect", "1431", "" ], [ "Q9H173-1", "protein_xref_glyconnect", "1581", "" ], [ "Q96D15-1", "protein_xref_glyconnect", "1713", "" ], [ "B0FP48-1", "protein_xref_glyconnect", "1888", "" ], [ "Q8NFI4-1", "protein_xref_glyconnect", "2066", "" ], [ "O95631-1", "protein_xref_glyconnect", "1542", "" ], [ "P47710-1", "protein_xref_glyconnect", "2932", "" ], [ "P05090-1", "protein_xref_glyconnect", "677", "" ], [ "Q96BZ4-1", "protein_xref_glyconnect", "1605", "" ], [ "Q6W4X9-1", "protein_xref_glyconnect", "1521", "" ], [ "P26842-1", "protein_xref_glyconnect", "800", "" ], [ "P10915-1", "protein_xref_glyconnect", "1380", "" ], [ "Q63HM9-1", "protein_xref_glyconnect", "1606", "" ], [ "Q6UW63-1", "protein_xref_glyconnect", "1430", "" ], [ "Q96BQ1-1", "protein_xref_glyconnect", "1659", "" ], [ "P35354-1", "protein_xref_glyconnect", "1649", "" ], [ "Q9BXN1-1", "protein_xref_glyconnect", "1019", "" ], [ "P04156-1", "protein_xref_glyconnect", "2056", "" ], [ "P43652-1", "protein_xref_glyconnect", "731", "" ] ] }, "readme": "Name\n - Human UniProtKB xref GlyConnect\n\nVersion\n - v-2.1.1\n\nCreated on\n - 2023-03-03T03:58:28.936Z\n\nModified on\n - 2023-03-03T03:58:29.019Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - Human UniProtKB xref GlyConnect dataset contains human(taxid: 9606) UniProtKB canonical accessions mapped to the GlyConnect IDs.\n\nDescription Domain\n Keywords\n - Xref\n - GlyConnect\n\n Pipeline Steps\n - Step-1: The script maps the UniProtKB accesions to the Glyconnect Database IDs\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: /data/shared/glyds/downloads/ebi/2023_02/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_xref_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_xref_glyconnect.csv\n Name: human_protein_xref_glyconnect.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/human_protein_xref_glyconnect.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1273\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1368\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/human_protein_xref_glyconnect.csv" }