{ "bcoid": "GLY_000725", "title": "Rat Xref O-GlcNAcAtlas", "description": "Rat Xref O-GlcNAcAtlas dataset contains rat (taxid: 10116) UniProtKB canonical accessions mapped to the ...", "filename": "rat_protein_xref_oglcnac_atlas.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tags": [ "O-GlcNAcAtlas Cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q9Z1Z9-1...", "protein_xref..." ], [ "D3ZN95-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q9Z1Z9-1", "protein_xref_oglcnac_atlas", "Q9Z1Z9", "O-GlcNAc Atlas" ], [ "D3ZN95-1", "protein_xref_oglcnac_atlas", "D3ZN95", "O-GlcNAc Atlas" ], [ "B5DEL8-1", "protein_xref_oglcnac_atlas", "B5DEL8", "O-GlcNAc Atlas" ], [ "P09951-1", "protein_xref_oglcnac_atlas", "P09951", "O-GlcNAc Atlas" ], [ "P00185-1", "protein_xref_oglcnac_atlas", "P00185", "O-GlcNAc Atlas" ], [ "Q63544-1", "protein_xref_oglcnac_atlas", "Q63544", "O-GlcNAc Atlas" ], [ "P68136-1", "protein_xref_oglcnac_atlas", "P68136", "O-GlcNAc Atlas" ], [ "Q9Z0V6-1", "protein_xref_oglcnac_atlas", "Q9Z0V6", "O-GlcNAc Atlas" ], [ "Q6PDU7-1", "protein_xref_oglcnac_atlas", "Q6PDU7", "O-GlcNAc Atlas" ], [ "Q60587-1", "protein_xref_oglcnac_atlas", "Q60587", "O-GlcNAc Atlas" ], [ "D3ZUK4-1", "protein_xref_oglcnac_atlas", "D3ZUK4", "O-GlcNAc Atlas" ], [ "Q5BK63-1", "protein_xref_oglcnac_atlas", "Q5BK63", "O-GlcNAc Atlas" ], [ "Q62784-1", "protein_xref_oglcnac_atlas", "Q62784", "O-GlcNAc Atlas" ], [ "D4A0T0-1", "protein_xref_oglcnac_atlas", "D4A0T0", "O-GlcNAc Atlas" ], [ "P15999-1", "protein_xref_oglcnac_atlas", "P15999", "O-GlcNAc Atlas" ], [ "P10860-1", "protein_xref_oglcnac_atlas", "P10860", "O-GlcNAc Atlas" ], [ "P21533-1", "protein_xref_oglcnac_atlas", "P21533", "O-GlcNAc Atlas" ], [ "Q63704-1", "protein_xref_oglcnac_atlas", "Q63704", "O-GlcNAc Atlas" ], [ "P37377-1", "protein_xref_oglcnac_atlas", "P37377", "O-GlcNAc Atlas" ], [ "P12839-1", "protein_xref_oglcnac_atlas", "P12839", "O-GlcNAc Atlas" ], [ "P12939-1", "protein_xref_oglcnac_atlas", "P12939", "O-GlcNAc Atlas" ], [ "Q641Y2-1", "protein_xref_oglcnac_atlas", "Q641Y2", "O-GlcNAc Atlas" ], [ "Q4KLH5-1", "protein_xref_oglcnac_atlas", "Q4KLH5", "O-GlcNAc Atlas" ], [ "Q5BJQ0-1", "protein_xref_oglcnac_atlas", "Q5BJQ0", "O-GlcNAc Atlas" ], [ "P00507-1", "protein_xref_oglcnac_atlas", "P00507", "O-GlcNAc Atlas" ], [ "Q8R490-1", "protein_xref_oglcnac_atlas", "Q8R490", "O-GlcNAc Atlas" ], [ "B2RYS2-1", "protein_xref_oglcnac_atlas", "B2RYS2", "O-GlcNAc Atlas" ], [ "P14882-1", "protein_xref_oglcnac_atlas", "P14882", "O-GlcNAc Atlas" ], [ "O08769-1", "protein_xref_oglcnac_atlas", "O08769", "O-GlcNAc Atlas" ], [ "P25886-1", "protein_xref_oglcnac_atlas", "P25886", "O-GlcNAc Atlas" ], [ "Q5XIC0-1", "protein_xref_oglcnac_atlas", "Q5XIC0", "O-GlcNAc Atlas" ], [ "P07895-1", "protein_xref_oglcnac_atlas", "P07895", "O-GlcNAc Atlas" ], [ "Q62651-1", "protein_xref_oglcnac_atlas", "Q62651", "O-GlcNAc Atlas" ], [ "P11884-1", "protein_xref_oglcnac_atlas", "P11884", "O-GlcNAc Atlas" ], [ "Q6P6R2-1", "protein_xref_oglcnac_atlas", "Q6P6R2", "O-GlcNAc Atlas" ], [ "F1LM47-1", "protein_xref_oglcnac_atlas", "F1LM47", "O-GlcNAc Atlas" ], [ "P35570-1", "protein_xref_oglcnac_atlas", "P35570", "O-GlcNAc Atlas" ], [ "Q5BJZ3-1", "protein_xref_oglcnac_atlas", "Q5BJZ3", "O-GlcNAc Atlas" ], [ "P97700-1", "protein_xref_oglcnac_atlas", "P97700", "O-GlcNAc Atlas" ], [ "P07756-1", "protein_xref_oglcnac_atlas", "P07756", "O-GlcNAc Atlas" ], [ "Q499N5-1", "protein_xref_oglcnac_atlas", "Q499N5", "O-GlcNAc Atlas" ], [ "P11960-1", "protein_xref_oglcnac_atlas", "P11960", "O-GlcNAc Atlas" ], [ "P29147-1", "protein_xref_oglcnac_atlas", "P29147", "O-GlcNAc Atlas" ], [ "P15337-2", "protein_xref_oglcnac_atlas", "P15337", "O-GlcNAc Atlas" ], [ "P35171-1", "protein_xref_oglcnac_atlas", "P35171", "O-GlcNAc Atlas" ], [ "Q05962-1", "protein_xref_oglcnac_atlas", "Q05962", "O-GlcNAc Atlas" ], [ "D4A8H8-1", "protein_xref_oglcnac_atlas", "D4A8H8", "O-GlcNAc Atlas" ], [ "P15146-1", "protein_xref_oglcnac_atlas", "P15146", "O-GlcNAc Atlas" ], [ "P19511-1", "protein_xref_oglcnac_atlas", "P19511", "O-GlcNAc Atlas" ], [ "Q5XIF3-1", "protein_xref_oglcnac_atlas", "Q5XIF3", "O-GlcNAc Atlas" ], [ "Q5M7W5-1", "protein_xref_oglcnac_atlas", "Q5M7W5", "O-GlcNAc Atlas" ], [ "Q4QR99-1", "protein_xref_oglcnac_atlas", "Q4QR99", "O-GlcNAc Atlas" ], [ "P37199-1", "protein_xref_oglcnac_atlas", "P37199", "O-GlcNAc Atlas" ], [ "Q9ER34-1", "protein_xref_oglcnac_atlas", "Q9ER34", "O-GlcNAc Atlas" ], [ "P09605-1", "protein_xref_oglcnac_atlas", "P09605", "O-GlcNAc Atlas" ], [ "P29418-1", "protein_xref_oglcnac_atlas", "P29418", "O-GlcNAc Atlas" ], [ "P29419-1", "protein_xref_oglcnac_atlas", "P29419", "O-GlcNAc Atlas" ], [ "P39032-1", "protein_xref_oglcnac_atlas", "P39032", "O-GlcNAc Atlas" ], [ "P49432-1", "protein_xref_oglcnac_atlas", "P49432", "O-GlcNAc Atlas" ], [ "Q9WVK7-1", "protein_xref_oglcnac_atlas", "Q9WVK7", "O-GlcNAc Atlas" ], [ "P16884-1", "protein_xref_oglcnac_atlas", "P16884", "O-GlcNAc Atlas" ], [ "Q8VIJ5-1", "protein_xref_oglcnac_atlas", "Q8VIJ5", "O-GlcNAc Atlas" ], [ "Q3V5X8-1", "protein_xref_oglcnac_atlas", "Q3V5X8", "O-GlcNAc Atlas" ], [ "Q99NA5-1", "protein_xref_oglcnac_atlas", "Q99NA5", "O-GlcNAc Atlas" ], [ "Q03114-1", "protein_xref_oglcnac_atlas", "Q03114", "O-GlcNAc Atlas" ], [ "P50753-1", "protein_xref_oglcnac_atlas", "P50753", "O-GlcNAc Atlas" ], [ "P29266-1", "protein_xref_oglcnac_atlas", "P29266", "O-GlcNAc Atlas" ], [ "P21571-1", "protein_xref_oglcnac_atlas", "P21571", "O-GlcNAc Atlas" ], [ "B2GV06-1", "protein_xref_oglcnac_atlas", "B2GV06", "O-GlcNAc Atlas" ], [ "Q9R064-1", "protein_xref_oglcnac_atlas", "Q9R064", "O-GlcNAc Atlas" ], [ "M0R7S5-1", "protein_xref_oglcnac_atlas", "M0R7S5", "O-GlcNAc Atlas" ], [ "P08503-1", "protein_xref_oglcnac_atlas", "P08503", "O-GlcNAc Atlas" ], [ "P63039-1", "protein_xref_oglcnac_atlas", "P63039", "O-GlcNAc Atlas" ], [ "O88778-1", "protein_xref_oglcnac_atlas", "O88778", "O-GlcNAc Atlas" ], [ "P68035-1", "protein_xref_oglcnac_atlas", "P68035", "O-GlcNAc Atlas" ], [ "A0A8I5Y9U2-1", "protein_xref_oglcnac_atlas", "A0A8I5Y9U2", "O-GlcNAc Atlas" ], [ "A0A8I6AGG9-1", "protein_xref_oglcnac_atlas", "A0A8I6AGG9", "O-GlcNAc Atlas" ], [ "O70351-1", "protein_xref_oglcnac_atlas", "O70351", "O-GlcNAc Atlas" ], [ "P18886-1", "protein_xref_oglcnac_atlas", "P18886", "O-GlcNAc Atlas" ], [ "A0A8I6ARC1-1", "protein_xref_oglcnac_atlas", "A0A8I6ARC1", "O-GlcNAc Atlas" ], [ "P10719-1", "protein_xref_oglcnac_atlas", "P10719", "O-GlcNAc Atlas" ], [ "O54960-1", "protein_xref_oglcnac_atlas", "O54960", "O-GlcNAc Atlas" ], [ "G3V6S0-1", "protein_xref_oglcnac_atlas", "G3V6S0", "O-GlcNAc Atlas" ], [ "P16036-1", "protein_xref_oglcnac_atlas", "P16036", "O-GlcNAc Atlas" ] ] }, "readme": "Name\n - Rat Xref O-GlcNAcAtlas\n\nVersion\n - v-2.1.1\n\nCreated on\n - \n\nModified on\n - \n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - Rat Xref O-GlcNAcAtlas dataset contains rat (taxid: 10116) UniProtKB canonical accessions mapped to the O-GlcNAcAtlas accessions.\n\nDescription Domain\n Keywords\n - Xref\n - O-GlcNAc\n - O-GlcNAc Atlas\n\n Pipeline Steps\n - Step-1: The script maps the UniProtKB accesions to the O-GlcNAcAtlas Database accessions\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_proteoform_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_proteoform_glycosylation_sites_oglcnac_atlas.csv\n Output Subdomain\n Name: rat_protein_xref_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_xref_oglcnac_atlas.csv\n Name: rat_protein_xref_oglcnac_atlas.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.1.1/reviewed/rat_protein_xref_oglcnac_atlas.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"176\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"176\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.1.1/reviewed/rat_protein_xref_oglcnac_atlas.csv" }